Citrus Sinensis ID: 048778
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 902 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SFV9 | 880 | Pentatricopeptide repeat- | yes | no | 0.927 | 0.951 | 0.548 | 0.0 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.893 | 0.880 | 0.340 | 1e-130 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.579 | 0.661 | 0.311 | 2e-70 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.557 | 0.812 | 0.306 | 4e-67 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.574 | 0.860 | 0.316 | 1e-66 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.544 | 0.821 | 0.286 | 2e-66 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.865 | 0.702 | 0.257 | 4e-66 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.545 | 0.772 | 0.304 | 8e-66 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.560 | 0.798 | 0.308 | 9e-66 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.512 | 0.733 | 0.303 | 4e-65 |
| >sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290, mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 956 bits (2472), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/858 (54%), Positives = 613/858 (71%), Gaps = 21/858 (2%)
Query: 44 TACQVSALLHKPNWQQNDILKSLVSHMPPHAASQVILLHGENTELGVRFFKWVCKQSTYC 103
A V++LL PNW++N LKSLVSHM P+ ASQVI L + ++ VRFF WVCK S+YC
Sbjct: 41 AAHDVASLLKTPNWEKNSSLKSLVSHMNPNVASQVISLQRSDNDICVRFFMWVCKHSSYC 100
Query: 104 YDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDDILKLIVALDGLSKD-GFKLNY 162
+D + LL L+VS LY VAH I+ LIKECS + ++LKL+ D L + GF+LNY
Sbjct: 101 FDPTQKNQLLKLIVSSGLYRVAHAVIVALIKECSRCEKEMLKLMYCFDELREVFGFRLNY 160
Query: 163 PCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCR 222
PCYS LLMSLAKLDLGF+AY + ++ ADGFV+ IDYR+++NALCK+G A EMF +
Sbjct: 161 PCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSK 220
Query: 223 VLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVG 282
+LK GF LD+HI TSL+LG CRG +L++A KVFDVMSKE + PNSV+++ LIHGLCEVG
Sbjct: 221 ILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVG 280
Query: 283 RLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYT 342
RL+EAF LKD+M EKG QPSTRTYTVLIKALCD L DKA +LFDEM+ + CKPN HTYT
Sbjct: 281 RLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYT 340
Query: 343 VLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKR 402
VLID LCR+GKI+EANG+C KM++D FP V+TYN LINGYCK GR++ AFELL +MEKR
Sbjct: 341 VLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKR 400
Query: 403 TCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIA 462
CKPN+RT+NELMEGLCR+ K YKAVHLLKR++D GL PD ++YN+L+DG CREG ++ A
Sbjct: 401 ACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTA 460
Query: 463 LKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADG 522
K+ +SM+ F + PD TFT+II+ CK GK ++A+ F GLM++KGIS DE T T L DG
Sbjct: 461 YKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDG 520
Query: 523 HCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPS 582
CK GKT +AL I E +V+ L TPH LN LD+L K K+KEE AM GKI K GLVPS
Sbjct: 521 VCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPS 580
Query: 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLF 642
VVTYT LVDGL R+G+I + ++E+MKL+GC PNV+ YT+IINGLCQ GR +EAE LL
Sbjct: 581 VVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLS 640
Query: 643 KMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSN 702
M D GVSPNH+TY+++V+ + + G+LD A + V MV G +LN +YS+LL G V S
Sbjct: 641 AMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQ 700
Query: 703 KASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTD 762
K D+ + S LRE D E L +E GG +
Sbjct: 701 KGI--------------------DNSEESTVSDIALRETDPECINELISVVEQLGGCISG 740
Query: 763 FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLIL 822
FLV LC+ GR E++ +++++++ GVF KA+ I+ YC ++K+ C+E + L+L
Sbjct: 741 LCIFLVTRLCKEGRTDESNDLVQNVLERGVFLEKAMDIIMESYCSKKKHTKCMELITLVL 800
Query: 823 ESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELG 882
+SGFVPSF+S C VIQGL+ EG ++A+ LV +L NG+ EK+ VL Y+E L+ GDE G
Sbjct: 801 KSGFVPSFKSFCLVIQGLKKEGDAERARELVMELLTSNGVVEKSGVLTYVECLMEGDETG 860
Query: 883 KSIDLLNLIDQVHYRQRP 900
++++L+DQ+H R+RP
Sbjct: 861 DCSEVIDLVDQLHCRERP 878
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust.
Identities = 286/840 (34%), Positives = 459/840 (54%), Gaps = 34/840 (4%)
Query: 38 PETINDTAC---QVSALLHKPNWQQNDILKSLVSHMPPHAASQVILLHGENTELGVRFFK 94
PE +D+ ++ ++L KPNW ++ LKS+VS + P S + L + + + F
Sbjct: 53 PEEESDSMSVPHRLLSILSKPNWHKSPSLKSMVSAISPSHVSSLFSL-DLDPKTALNFSH 111
Query: 95 WVCKQSTYCYDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDDILKLIVALDGLS 154
W+ + Y + V S LL L+++ GV K + +IK C DS D L ++ ++
Sbjct: 112 WISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSC-DSVGDALYVLDLCRKMN 170
Query: 155 KDG-FKLNYP----CYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCK 209
KD F+L Y CY+ LL SLA+ L V+++++ D + Y ++N CK
Sbjct: 171 KDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCK 230
Query: 210 SGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSV 269
G V + ++++ G D TSL++G+C+ DL AFKVF+ M + R N V
Sbjct: 231 LGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRR-NEV 289
Query: 270 TFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEM 329
+T LIHGLC R+DEA L +M + P+ RTYTVLIK+LC +AL+L EM
Sbjct: 290 AYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEM 349
Query: 330 VVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRI 389
KPN HTYTVLID LC + K ++A + G+ML+ G P V+TYN LINGYCK+G I
Sbjct: 350 EETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMI 409
Query: 390 IAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNIL 449
A +++ LME R PN RTYNEL++G C+ N +KA+ +L ++++ + PD +TYN L
Sbjct: 410 EDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSL 468
Query: 450 VDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGI 509
+DG CR G D A ++ + M+ GLVPD +T+TS+ID LCK + E A F + +KG+
Sbjct: 469 IDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGV 528
Query: 510 SPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYA 569
+P+ TAL DG+CK GK EA ++ E+M+ L N+ + LC + KLKE
Sbjct: 529 NPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATL 588
Query: 570 MFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLC 629
+ K++K GL P+V T TIL+ L + G+ A S + M +G P+ HTYT I C
Sbjct: 589 LEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYC 648
Query: 630 QRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSN 689
+ GR +AE ++ KM + GVSP+ TYS L++ + G+ + AF ++ M GC+ + +
Sbjct: 649 REGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQH 708
Query: 690 VYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRL 749
+ +L+ L+ S C A S+ +E D + L +M VEH+
Sbjct: 709 TFLSLIKHLLEMKYGKQKGSEPELC---AMSNMMEFD------TVVELLEKM-VEHSVT- 757
Query: 750 RDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS-GVFPAKAI-TSIIGCYCK 807
Y L++ +C G + A+++ + ++ G+ P++ + +++ C CK
Sbjct: 758 ---------PNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCK 808
Query: 808 ERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAA 867
+K+++ + ++ ++ G +P ES +I GL +G ++ ++ +L + E++ A
Sbjct: 809 LKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELA 868
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 165/529 (31%), Positives = 270/529 (51%), Gaps = 6/529 (1%)
Query: 173 AKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDT 232
+LDLGF A +K GF + AI + ++ LC R + C+
Sbjct: 101 GRLDLGFAALGNVIK---KGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPN 157
Query: 233 HICTSLVL-GHCRGNDLKEAFKVFDVMSKE--ASYRPNSVTFTTLIHGLCEVGRLDEAFS 289
+++L G C N +EA ++ +M+ + P+ V++TT+I+G + G D+A+S
Sbjct: 158 VFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYS 217
Query: 290 LKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLC 349
EM ++G P TY +I ALC DKA+ + + MV P+ TY ++ C
Sbjct: 218 TYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYC 277
Query: 350 REGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIR 409
G+ EA G KM DG P VVTY++L++ CK GR + A ++ M KR KP I
Sbjct: 278 SSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEIT 337
Query: 410 TYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSM 469
TY L++G + LL +V G+ PD ++IL+ + ++G++D A+ +F+ M
Sbjct: 338 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKM 397
Query: 470 SIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKT 529
GL P+ T+ ++I LCK G+ E A +F M+ +G+SP +L G C K
Sbjct: 398 RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKW 457
Query: 530 GEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTIL 589
A + M+ NS +D CKE ++ E +F +++ G+ P+V+TY L
Sbjct: 458 ERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTL 517
Query: 590 VDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGV 649
++G AG + AM ++ M G PN TY+ +ING C+ R ++A +L +M GV
Sbjct: 518 INGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGV 577
Query: 650 SPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGL 698
SP+ ITY+I+++ T R A ++ + +G Q+ + Y+ +L GL
Sbjct: 578 SPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 626
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Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (655), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 168/549 (30%), Positives = 268/549 (48%), Gaps = 46/549 (8%)
Query: 181 AYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGE----MFFCRVLK-HGFCLDTHIC 235
A +F +I + + ID+ N LC S + R + + FC+ ++ +G D +
Sbjct: 54 AIDLFESMIQSRPLPTPIDF----NRLC-SAVARTKQYDLVLGFCKGMELNGIEHDMYTM 108
Query: 236 TSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMC 295
T ++ +CR L AF V K Y P+++TF+TL++G C GR+ EA +L D M
Sbjct: 109 TIMINCYCRKKKLLFAFSVLGRAWK-LGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMV 167
Query: 296 EKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKID 355
E +P T + LI LC +AL L D MV +P+ TY +++RLC+ G
Sbjct: 168 EMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSA 227
Query: 356 EANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELM 415
A + KM + VV Y+++I+ CK G A L ME + K ++ TY+ L+
Sbjct: 228 LALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLI 287
Query: 416 EGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLV 475
GLC K +L+ ++ + PD +T++ L+D F +EG+L A +++N M G+
Sbjct: 288 GGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIA 347
Query: 476 PDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMI 535
PD T+ S+IDG CK AN F LMV KG PD T + L + +CK + + + +
Sbjct: 348 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 407
Query: 536 FERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFR 595
F + + N+ + C+ KL +F +++ G+ PSVVTY IL+DGL
Sbjct: 408 FREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCD 467
Query: 596 AGNIALAMSMIEVMKLA-----------------------------------GCPPNVHT 620
G + A+ + E M+ + G P+V T
Sbjct: 468 NGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVT 527
Query: 621 YTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMV 680
Y V+I GLC++G EA+ML KM + G +P+ TY+IL+RAH L + +++ M
Sbjct: 528 YNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMK 587
Query: 681 ANGCQLNSN 689
G +S+
Sbjct: 588 VCGFSADSS 596
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 255 bits (652), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 165/521 (31%), Positives = 266/521 (51%), Gaps = 3/521 (0%)
Query: 181 AYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLK-HGFCLDTHICTSLV 239
A A+F ++I + S +D+ +A+ ++ + FC+ L+ +G + + ++
Sbjct: 72 AIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNL-VLDFCKQLELNGIAHNIYTLNIMI 130
Query: 240 LGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGW 299
CR A+ V + K Y P++ TF TLI GL G++ EA L D M E G
Sbjct: 131 NCFCRCCKTCFAYSVLGKVMK-LGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189
Query: 300 QPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANG 359
QP TY ++ +C T AL L +M + K + TY+ +ID LCR+G ID A
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249
Query: 360 MCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLC 419
+ +M G VVTYN L+ G CK G+ LL M R PN+ T+N L++
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309
Query: 420 RMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGF 479
+ K +A L K ++ G+ P+ ITYN L+DG+C + +L A + + M PD
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIV 369
Query: 480 TFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERM 539
TFTS+I G C + + + F + K+G+ + T + L G C++GK A +F+ M
Sbjct: 370 TFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEM 429
Query: 540 VQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNI 599
V + L LD LC KL++ +F + K + +V YT +++G+ + G +
Sbjct: 430 VSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKV 489
Query: 600 ALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSIL 659
A ++ + G PNV TYTV+I+GLC++G EA +LL KM + G +PN TY+ L
Sbjct: 490 EDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTL 549
Query: 660 VRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVS 700
+RAH G L + K++ M + G +++ ++ L+S
Sbjct: 550 IRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLS 590
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (649), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 142/495 (28%), Positives = 243/495 (49%), Gaps = 4/495 (0%)
Query: 189 IADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDL 248
+ F L ++ + + + ++G + G F ++ HG D CT+L+ G CR
Sbjct: 94 VNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKT 153
Query: 249 KEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTV 308
++A K+ +++ + P+ +T+ +I G C+ G ++ A S+ D M P TY
Sbjct: 154 RKAAKILEILEGSGAV-PDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNT 209
Query: 309 LIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDG 368
++++LCD +A+ + D M+ + C P+ TYT+LI+ CR+ + A + +M G
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRG 269
Query: 369 HFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAV 428
P VVTYNVL+NG CK+GR+ A + L M C+PN+ T+N ++ +C + A
Sbjct: 270 CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAE 329
Query: 429 HLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGL 488
LL ++ G P +T+NIL++ CR+G L A+ I M G P+ ++ ++ G
Sbjct: 330 KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGF 389
Query: 489 CKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTP 548
CK K + A + MV +G PD T + CK+GK +A+ I ++
Sbjct: 390 CKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVL 449
Query: 549 HVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEV 608
N+ +D L K K + + ++ L P +TY+ LV GL R G + A+
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509
Query: 609 MKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGR 668
+ G PN T+ I+ GLC+ + A L M + G PN +Y+IL+ A G
Sbjct: 510 FERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGM 569
Query: 669 LDHAFKIVSFMVANG 683
A ++++ + G
Sbjct: 570 AKEALELLNELCNKG 584
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 221/857 (25%), Positives = 368/857 (42%), Gaps = 76/857 (8%)
Query: 53 HKPNWQQNDILKSLVSHMPPHAASQVI-------LLHGENTELGVRFFKWVCKQSTYCYD 105
K +W++ + S+VS + +I L E G++ F +Y
Sbjct: 48 RKKHWRRKSMRCSVVSMKSSDFSGSMIRKSSKPDLSSSEEVTRGLKSFPDTDSSFSYFKS 107
Query: 106 VNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDDILKLIVALDGLSKDGFKLNYPCY 165
V ++L++ +CN ++E ++ D K + ++ D + K K + Y
Sbjct: 108 VAGNLNLVHTTETCNY-------MLEALR--VDGK--LEEMAYVFDLMQKRIIKRDTNTY 156
Query: 166 SCLLMSLA-KLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVL 224
+ SL+ K L YA+ K+ GFVL+A Y +I+ L KS + R++
Sbjct: 157 LTIFKSLSVKGGLKQAPYAL-RKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMI 215
Query: 225 KHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRL 284
GF +SL++G + D+ + M + +PN TFT I L G++
Sbjct: 216 LEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEM-ETLGLKPNVYTFTICIRVLGRAGKI 274
Query: 285 DEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVL 344
+EA+ + M ++G P TYTVLI ALC D A +F++M R KP+ TY L
Sbjct: 275 NEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITL 334
Query: 345 IDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTC 404
+DR +D +M +DGH P VVT+ +L++ CK G AF+ L +M +
Sbjct: 335 LDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGI 394
Query: 405 KPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALK 464
PN+ TYN L+ GL R+++ A+ L + G+ P TY + +D + + G AL+
Sbjct: 395 LPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALE 454
Query: 465 IFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHC 524
F M G+ P+ + + L K G+ A F + G+ PD T + +
Sbjct: 455 TFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYS 514
Query: 525 KNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVV 584
K G+ EA+ + M++N V+NS ++ L K +++ E + MF ++ + L P+VV
Sbjct: 515 KVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVV 574
Query: 585 TYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKM 644
TY L+ GL + G I A+ + E M GCPPN T+ + + LC+ A +LFKM
Sbjct: 575 TYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM 634
Query: 645 FDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYS------ALLAGL 698
D+G P+ TY+ ++ G++ A Q+ VY LL G+
Sbjct: 635 MDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFH-------QMKKLVYPDFVTLCTLLPGV 687
Query: 699 VSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG- 757
V ++ I T+ + + + +E + L E +++A +R+ + G
Sbjct: 688 VKASLIEDAYKIITNFLYNCAD---QPANLFWEDLIGSILAEAGIDNAVSFSERLVANGI 744
Query: 758 ----------------------GSTTDF---------------YNFLVVELCRAGRIVEA 780
G+ T F YN L+ L A I A
Sbjct: 745 CRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIA 804
Query: 781 DRIMKDIMKSGVFPAKAITS-IIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQG 839
+ + +G P A + ++ Y K K D+ E + + +H VI G
Sbjct: 805 QDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISG 864
Query: 840 LQSEGRNKQAKNLVSDL 856
L G A +L DL
Sbjct: 865 LVKAGNVDDALDLYYDL 881
|
Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (644), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 163/536 (30%), Positives = 262/536 (48%), Gaps = 44/536 (8%)
Query: 181 AYAVFVKLIADGFVLSAIDYRSVINALCKS---GLVRAGEMFFCRVLK-HGFCLDTHICT 236
A +F +I + + ID+ + +A+ K+ LV A C+ ++ G + + +
Sbjct: 72 AIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLA----LCKQMELKGIAHNLYTLS 127
Query: 237 SLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCE 296
++ CR L AF + K Y PN++TF+TLI+GLC GR+ EA L D M E
Sbjct: 128 IMINCFCRCRKLCLAFSAMGKIIK-LGYEPNTITFSTLINGLCLEGRVSEALELVDRMVE 186
Query: 297 KGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDE 356
G +P T L+ LC +A+ L D+MV C+PNA TY +++ +C+ G+
Sbjct: 187 MGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTAL 246
Query: 357 ANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELME 416
A + KM + V Y+++I+G CK G + AF L ME + NI TYN L+
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIG 306
Query: 417 GLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVP 476
G C + LL+ ++ + P+ +T+++L+D F +EG+L A ++ M G+ P
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAP 366
Query: 477 DGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIF 536
D T+TS+IDG CK + AN LMV KG P+ T L +G+CK + + L +F
Sbjct: 367 DTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELF 426
Query: 537 ERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRA 596
+M + N+ + C+ KL +F +++ + P++VTY IL+DGL
Sbjct: 427 RKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDN 486
Query: 597 GNIALAMSMIEVMK-----------------------------------LAGCPPNVHTY 621
G A+ + E ++ L G P V TY
Sbjct: 487 GESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTY 546
Query: 622 TVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVS 677
++I GLC++G EAE+L KM + G +P+ TY+IL+RAH G + K++
Sbjct: 547 NIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIE 602
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 252 bits (644), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 168/545 (30%), Positives = 273/545 (50%), Gaps = 39/545 (7%)
Query: 165 YSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVL 224
++ LL ++AK+ V ++ K+ V Y +IN C+ + +++
Sbjct: 88 FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMM 147
Query: 225 KHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRL 284
K G+ +SL+ G+C G + +A + D M E YRP+++TFTTLIHGL +
Sbjct: 148 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV-EMGYRPDTITFTTLIHGLFLHNKA 206
Query: 285 DEAFSLKDEMCEKGWQPSTRTYTVLIKALC-----DISLT-------------------- 319
EA +L D M ++G QP+ TY V++ LC D++L
Sbjct: 207 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTI 266
Query: 320 ----------DKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGH 369
D AL+LF EM K +PN TY+ LI LC G+ +A+ + M++
Sbjct: 267 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 326
Query: 370 FPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVH 429
P +VT+N LI+ + K+G+ + A +L M KR+ P+I TYN L+ G C ++ KA
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQ 386
Query: 430 LLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLC 489
+ + +V FPD +TYN L+ GFC+ +++ ++F MS GLV D T+T++I GL
Sbjct: 387 MFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 446
Query: 490 KLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTP- 548
G + A F MV G+ PD T + L DG C NGK +AL +F+ M Q +++K
Sbjct: 447 HDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYM-QKSEIKLDI 505
Query: 549 HVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEV 608
++ + ++ +CK K+ + + +F + G+ P+VVTY ++ GL + A ++++
Sbjct: 506 YIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 565
Query: 609 MKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGR 668
MK G PN TY +I + G + L+ +M + T LV GR
Sbjct: 566 MKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG-LVANMLHDGR 624
Query: 669 LDHAF 673
LD +F
Sbjct: 625 LDKSF 629
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (638), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 141/464 (30%), Positives = 242/464 (52%), Gaps = 2/464 (0%)
Query: 243 CRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPS 302
CR + L A V M K Y P+ VT +L++G C R+ +A SL +M E G+QP
Sbjct: 127 CRRSQLSLALAVLAKMMK-LGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPD 185
Query: 303 TRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCG 362
+ T+ LI L + +A++L D MVVK C+P+ TY ++++ LC+ G ID A +
Sbjct: 186 SFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLK 245
Query: 363 KMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMN 422
KM Q PGVV YN +I+ C + A L M+ + +PN+ TYN L+ LC
Sbjct: 246 KMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 305
Query: 423 KSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFT 482
+ A LL +++ + P+ +T++ L+D F +EG+L A K+++ M + PD FT++
Sbjct: 306 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 365
Query: 483 SIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQN 542
S+I+G C + + A F LM+ K P+ T L G CK + E + +F M Q
Sbjct: 366 SLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQR 425
Query: 543 TDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALA 602
+ + + + + +F +++ G++P ++TY+IL+DGL G + A
Sbjct: 426 GLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETA 485
Query: 603 MSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRA 662
+ + E ++ + P+++TY ++I G+C+ G+ ++ L + GV PN +TY+ ++
Sbjct: 486 LVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSG 545
Query: 663 HASTGRLDHAFKIVSFMVANGCQLNSNVYSALL-AGLVSSNKAS 705
G + A + M G +S Y+ L+ A L +KA+
Sbjct: 546 FCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAA 589
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 902 | ||||||
| 359494794 | 876 | PREDICTED: pentatricopeptide repeat-cont | 0.955 | 0.984 | 0.607 | 0.0 | |
| 296088147 | 883 | unnamed protein product [Vitis vinifera] | 0.937 | 0.958 | 0.598 | 0.0 | |
| 147866209 | 833 | hypothetical protein VITISV_017537 [Viti | 0.921 | 0.997 | 0.613 | 0.0 | |
| 297833514 | 864 | predicted protein [Arabidopsis lyrata su | 0.953 | 0.995 | 0.539 | 0.0 | |
| 15231438 | 880 | pentatricopeptide repeat-containing prot | 0.927 | 0.951 | 0.548 | 0.0 | |
| 225434273 | 890 | PREDICTED: pentatricopeptide repeat-cont | 0.922 | 0.934 | 0.351 | 1e-140 | |
| 147857775 | 1099 | hypothetical protein VITISV_019809 [Viti | 0.925 | 0.759 | 0.345 | 1e-140 | |
| 449453087 | 915 | PREDICTED: pentatricopeptide repeat-cont | 0.930 | 0.916 | 0.331 | 1e-130 | |
| 147858101 | 962 | hypothetical protein VITISV_041982 [Viti | 0.931 | 0.873 | 0.335 | 1e-129 | |
| 15238505 | 915 | pentatricopeptide repeat-containing prot | 0.893 | 0.880 | 0.340 | 1e-128 |
| >gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1100 bits (2846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/866 (60%), Positives = 671/866 (77%), Gaps = 4/866 (0%)
Query: 39 ETINDTACQVSALLHKPNWQQNDILKSLVSHMPPHAASQVILLHGENTELGVRFFKWVCK 98
+T TA +S L++KPNW+ + LKSL SHM PH A ++I L N ELGVRFFKWVC+
Sbjct: 13 QTTEGTAFHISNLINKPNWEHDKTLKSLASHMTPHLAGKIIGLQSNNVELGVRFFKWVCR 72
Query: 99 QSTYCYDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDDILKLIVALDGLSKDGF 158
QS+YCYD++ RI LL ++VS +L+GVA KA++ LI+EC DS++ ++KL+ ALDG+++ GF
Sbjct: 73 QSSYCYDLDGRIQLLGVLVSRDLFGVAQKAVVLLIQECEDSENGVVKLMGALDGMTELGF 132
Query: 159 KLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEM 218
+L+YPCYS LLM LAKL++GFVA+ V+ +++ +GFVL IDYR+V+NALCK+G V+A EM
Sbjct: 133 RLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEM 192
Query: 219 FFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGL 278
F C+VL+ GF LDTH+CTSLVL +CR +DL EAF+VF+ MSKE + RPNSVT++ LIHGL
Sbjct: 193 FCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGL 252
Query: 279 CEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNA 338
CE GRL+EAF LK EM EKG QPSTRTYTVLIKA CDI +TDKA+ + DEM K C PN
Sbjct: 253 CEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNV 312
Query: 339 HTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLAL 398
HTYT+LIDRLCREGKI+EANG+ KML+ G PG++T+N LINGYCK+G +++AF+LL++
Sbjct: 313 HTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSV 372
Query: 399 MEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQ 458
MEK CKPNIRTYNELMEGLCR++KSYKA LL+RVVD GL PD +TYNILVDGFC+EGQ
Sbjct: 373 MEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQ 432
Query: 459 LDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITA 518
L++A IFNSM+ GL PDGFTFT++IDGLCKLG+ E ANG G MVKKGIS DE T TA
Sbjct: 433 LNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTA 492
Query: 519 LADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFG 578
L DGHCK GK + +FE MV+N L T H N FLD L K+ KL E AM GK++K+G
Sbjct: 493 LIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYG 552
Query: 579 LVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAE 638
LVPSVVT+TIL++G RAG AL++ M+E MK AGC PNV+TYT+IINGLC GR +EAE
Sbjct: 553 LVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAE 612
Query: 639 MLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGL 698
+LF M GVSPNH TY++LV+AH GRLD AF+IVS MV NGCQ NS++YSALL+G
Sbjct: 613 TILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGF 672
Query: 699 VSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGG 758
V SN A G ++S++ DA S L +++D S + R MDV+HA ++RD I+ CG
Sbjct: 673 VLSNTAIGARALSSTGDLDARS--LSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGV 730
Query: 759 STTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFM 818
T D YNFLVV LC+ GRI+EAD++ +D++K G+FP KAI+SII YCK KYD+CLEFM
Sbjct: 731 PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSIIEHYCKTCKYDNCLEFM 790
Query: 819 NLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLT- 877
L+L++ FVPSF S+C VI GL++EGR ++A+ LVSDL R+ GIEE+ V P IEFL+
Sbjct: 791 KLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEEVEVTPSIEFLMKE 850
Query: 878 -GDELGKSIDLLNLIDQVHYRQRPVI 902
D+ K + L+ I+QVHY++RP+I
Sbjct: 851 EEDDPDKCLKLIKAIEQVHYKERPII 876
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1076 bits (2782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/866 (59%), Positives = 660/866 (76%), Gaps = 20/866 (2%)
Query: 39 ETINDTACQVSALLHKPNWQQNDILKSLVSHMPPHAASQVILLHGENTELGVRFFKWVCK 98
+T TA +S L++KPNW+ + LKSL SHM PH A ++I L N ELGVRFFKWVC+
Sbjct: 36 QTTEGTAFHISNLINKPNWEHDKTLKSLASHMTPHLAGKIIGLQSNNVELGVRFFKWVCR 95
Query: 99 QSTYCYDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDDILKLIVALDGLSKDGF 158
QS+YCYD++ RI LL ++VS +L+GVA KA++ LI+EC DS++ ++KL+ ALDG+++ GF
Sbjct: 96 QSSYCYDLDGRIQLLGVLVSRDLFGVAQKAVVLLIQECEDSENGVVKLMGALDGMTELGF 155
Query: 159 KLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEM 218
+L+YPCYS LLM LAKL++GFVA+ V+ +++ +GFVL IDYR+V+NALCK+G V+A EM
Sbjct: 156 RLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEM 215
Query: 219 FFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGL 278
F C+VL+ GF LDTH+CTSLVL +CR +DL EAF+VF+ MSKE + RPNSVT++ LIHGL
Sbjct: 216 FCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGL 275
Query: 279 CEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNA 338
CE GRL+EAF LK EM EKG QPSTRTYTVLIKA CDI +TDKA+ + DEM K C PN
Sbjct: 276 CEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNV 335
Query: 339 HTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLAL 398
HTYT+LIDRLCREGKI+EANG+ KML+ G PG++T+N LINGYCK+G +++AF+LL++
Sbjct: 336 HTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSV 395
Query: 399 MEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQ 458
MEK CKPNIRTYNELMEGLCR++KSYKA LL+RVVD GL PD +TYNILVDGFC+EGQ
Sbjct: 396 MEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQ 455
Query: 459 LDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITA 518
L++A IFNSM+ GL PDGFTFT++IDGLCKLG+ E ANG G MVKKGIS DE T TA
Sbjct: 456 LNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTA 515
Query: 519 LADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFG 578
L DGHCK GK + +FE MV+N L T H N FLD L K+ KL E AM GK++K+G
Sbjct: 516 LIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYG 575
Query: 579 LVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAE 638
LVPSVVT+TIL++G RAG AL++ M+E MK AGC PNV+TYT+IINGLC GR +EAE
Sbjct: 576 LVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAE 635
Query: 639 MLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGL 698
+LF M GVSPNH TY++LV+AH GRLD AF+IVS MV NGCQ NS++YSALL+G
Sbjct: 636 TILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGF 695
Query: 699 VSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGG 758
V SN A G ++S++ DA S E +D++ L + I+ CG
Sbjct: 696 VLSNTAIGARALSSTGDLDARSLSSEENDNNC------------------LSNEIKKCGV 737
Query: 759 STTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFM 818
T D YNFLVV LC+ GRI+EAD++ +D++K G+FP KAI+SII YCK KYD+CLEFM
Sbjct: 738 PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSIIEHYCKTCKYDNCLEFM 797
Query: 819 NLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLT- 877
L+L++ FVPSF S+C VI GL++EGR ++A+ LVSDL R+ GIEE+ V P IEFL+
Sbjct: 798 KLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVRHTGIEEEVEVTPSIEFLMKE 857
Query: 878 -GDELGKSIDLLNLIDQVHYRQRPVI 902
D+ K + L+ I+QVHY++RP+I
Sbjct: 858 EEDDPDKCLKLIKAIEQVHYKERPII 883
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1068 bits (2762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/835 (61%), Positives = 650/835 (77%), Gaps = 4/835 (0%)
Query: 70 MPPHAASQVILLHGENTELGVRFFKWVCKQSTYCYDVNSRIHLLNLVVSCNLYGVAHKAI 129
M PH A ++I L N ELGVRFFKWVC+QS+YCYD++ RI LL ++VS +L+GVA KA+
Sbjct: 1 MTPHLAGKIIGLQSNNVELGVRFFKWVCRQSSYCYDLDGRIQLLGVLVSRDLFGVAQKAV 60
Query: 130 IELIKECSDSKDDILKLIVALDGLSKDGFKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLI 189
+ LI+EC DS++ ++KL+ ALDG+++ GF+L+YPCYS LLM LAKL++GFVA+ V+ +++
Sbjct: 61 VLLIQECEDSENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMV 120
Query: 190 ADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLK 249
+GFVL IDYR+V+NALCK+G V+A EMF C+VL+ GF LDTH+CTSLVL +CR +DL
Sbjct: 121 NEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLG 180
Query: 250 EAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVL 309
EAF+VF+ MSKE S RPNSVT++ LIHGLCE GRL+EAF LK EM EKG QPSTRTYTVL
Sbjct: 181 EAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 240
Query: 310 IKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGH 369
IKA CDI +TDKA+ + DEM K C PN HTYT+LIDRLCREGKI+EANG+ KML+ G
Sbjct: 241 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 300
Query: 370 FPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVH 429
PG++T+N LINGYCK+G +++AF+LL++MEK CKPNIRTYNELMEGLCR++KSYKA
Sbjct: 301 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL 360
Query: 430 LLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLC 489
LL+RVVD GL PD +TYNILVDGFC+EGQL++A IFNSM+ GL PDGFTFT++IDGLC
Sbjct: 361 LLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC 420
Query: 490 KLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPH 549
KLG+ E ANG G MVKKGIS DE T TAL DGHCK GK + +FE MV+N L T H
Sbjct: 421 KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAH 480
Query: 550 VLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVM 609
N FLD L K+ KL E AM GK++K+GLVPSVVT+TIL++G RAG AL++ M+E M
Sbjct: 481 TFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERM 540
Query: 610 KLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRL 669
K AGC PNV+TYT+IINGLC GR +EAE +LF M GVSPNH TY++LV+AH GRL
Sbjct: 541 KQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRL 600
Query: 670 DHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDD 729
D AF+IVS MV NGCQ NS++YSALL+G V SN A G ++S++ DA S L +++D
Sbjct: 601 DRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARS--LSSEEND 658
Query: 730 YERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789
S + R MDV+HA ++RD I+ CG T D YNFLVV LC+ GRI+EAD++ +D++K
Sbjct: 659 NNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVK 718
Query: 790 SGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQA 849
G+FP KAI+SII YCK KYD+CLEFM L+L++ FVPSF S+C VI GL++EGR ++A
Sbjct: 719 HGLFPDKAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEA 778
Query: 850 KNLVSDLFRYNGIEEKAAVLPYIEFLLT--GDELGKSIDLLNLIDQVHYRQRPVI 902
+ LVSDL R+ GIEE+ V P IEFL+ D+ K + L+ I+QVHY++RP+I
Sbjct: 779 QKLVSDLVRHTGIEEEVEVTPSIEFLMKEEEDDPDKCLKLIKAIEQVHYKERPII 833
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/902 (53%), Positives = 627/902 (69%), Gaps = 42/902 (4%)
Query: 1 MLIHLTKLTK-HGLRPHGLHSLYNLVSVSLLSSYNLKSPETINDTACQVSALLHKPNWQQ 59
MLIH+ K LR H SVS S S + A V++LL PNW++
Sbjct: 1 MLIHIRIPRKILALRRHVFPPYNAFFSVSSRPS-QFSSDQV---AAHNVASLLKSPNWEK 56
Query: 60 NDILKSLVSHMPPHAASQVILLHGENTELGVRFFKWVCKQSTYCYDVNSRIHLLNLVVSC 119
N LKSLVSHM P+ ASQVI L + ++ VRFF WVCK S+YC+D + LL L+VS
Sbjct: 57 NSSLKSLVSHMSPNVASQVISLQRSDNDICVRFFMWVCKHSSYCFDPTQKNQLLKLIVSS 116
Query: 120 NLYGVAHKAIIELIKECSDSKDDILKLIVALDGLSK-DGFKLNYPCYSCLLMSLAKLDLG 178
L+ VAH I+ LI+ECS + ++LKLI D L + GF+LNYPCYS LLMSLAKLDLG
Sbjct: 117 GLFRVAHDVIVALIRECSRCEKEMLKLISCFDELREVSGFRLNYPCYSSLLMSLAKLDLG 176
Query: 179 FVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSL 238
F+AY + ++ ADGFV+ IDYR+++NALCK+G A EMF C++LK GF LD+HI TSL
Sbjct: 177 FLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSL 236
Query: 239 VLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKG 298
+LG CRG +L++A KVFD+MS+E + PNSV+++ LIHGLCEVGRL+EAF LKD+M EKG
Sbjct: 237 LLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKG 296
Query: 299 WQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEAN 358
QPSTRTYTVLIKALCD L DKA +LFDEM+ + CKPN HTYTVLID LCR+GKI+EAN
Sbjct: 297 CQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEAN 356
Query: 359 GMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGL 418
G+C KM++DG FP V+TYN LINGYCK GR++ AFELL +MEKR CKPN+RT+NELMEGL
Sbjct: 357 GVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGL 416
Query: 419 CRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDG 478
CR+ K YKAVHLLKR++D GL PD ++YN+L+DG CREG +++A K+ SM+ F L PD
Sbjct: 417 CRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDC 476
Query: 479 FTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFER 538
TFT+II+ CK GK ++A+ F GLM++KGIS DE T T L DG C GKT +AL I E
Sbjct: 477 LTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILET 536
Query: 539 MVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGN 598
+V+ L TPH LN LD+L K KLKEE AM GKI K GLVPSVVTYT LVDGL R+G+
Sbjct: 537 LVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGD 596
Query: 599 IALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSI 658
I+ + M+E+MKL+GC PNV+ YT+IINGLCQ GR +EAE LL M D GVSPNH+TY++
Sbjct: 597 ISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTV 656
Query: 659 LVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDA 718
+V+ + + G+LD A + V MV G +LN +YS+LL G V S K
Sbjct: 657 MVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQKG-------------- 702
Query: 719 GSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIV 778
+RE D E L +E GGST+ FLV LC+ GR
Sbjct: 703 -------------------IRETDPECIKELISVVEQLGGSTSGLCIFLVTRLCKEGRTD 743
Query: 779 EADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQ 838
E++ +++ I+KSGVF KAI I+ YC ++K+ C+E + L+L+SGFVPSF+S C VIQ
Sbjct: 744 ESNGLVQTILKSGVFLEKAIDIIMESYCSKKKHTKCVELITLVLKSGFVPSFKSFCLVIQ 803
Query: 839 GLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVHYRQ 898
GL+ EG ++A+ LV +L NG+ EK+ VLPY+E L+ E G ++++L+DQ+H R+
Sbjct: 804 GLKKEGDTERARELVMELLTSNGVVEKSGVLPYVECLM---ETGDCSEVIDLVDQLHSRE 860
Query: 899 RP 900
RP
Sbjct: 861 RP 862
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g07290, mitochondrial; Flags: Precursor gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana] gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 956 bits (2472), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/858 (54%), Positives = 613/858 (71%), Gaps = 21/858 (2%)
Query: 44 TACQVSALLHKPNWQQNDILKSLVSHMPPHAASQVILLHGENTELGVRFFKWVCKQSTYC 103
A V++LL PNW++N LKSLVSHM P+ ASQVI L + ++ VRFF WVCK S+YC
Sbjct: 41 AAHDVASLLKTPNWEKNSSLKSLVSHMNPNVASQVISLQRSDNDICVRFFMWVCKHSSYC 100
Query: 104 YDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDDILKLIVALDGLSKD-GFKLNY 162
+D + LL L+VS LY VAH I+ LIKECS + ++LKL+ D L + GF+LNY
Sbjct: 101 FDPTQKNQLLKLIVSSGLYRVAHAVIVALIKECSRCEKEMLKLMYCFDELREVFGFRLNY 160
Query: 163 PCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCR 222
PCYS LLMSLAKLDLGF+AY + ++ ADGFV+ IDYR+++NALCK+G A EMF +
Sbjct: 161 PCYSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSK 220
Query: 223 VLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVG 282
+LK GF LD+HI TSL+LG CRG +L++A KVFDVMSKE + PNSV+++ LIHGLCEVG
Sbjct: 221 ILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVG 280
Query: 283 RLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYT 342
RL+EAF LKD+M EKG QPSTRTYTVLIKALCD L DKA +LFDEM+ + CKPN HTYT
Sbjct: 281 RLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYT 340
Query: 343 VLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKR 402
VLID LCR+GKI+EANG+C KM++D FP V+TYN LINGYCK GR++ AFELL +MEKR
Sbjct: 341 VLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKR 400
Query: 403 TCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIA 462
CKPN+RT+NELMEGLCR+ K YKAVHLLKR++D GL PD ++YN+L+DG CREG ++ A
Sbjct: 401 ACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTA 460
Query: 463 LKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADG 522
K+ +SM+ F + PD TFT+II+ CK GK ++A+ F GLM++KGIS DE T T L DG
Sbjct: 461 YKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDG 520
Query: 523 HCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPS 582
CK GKT +AL I E +V+ L TPH LN LD+L K K+KEE AM GKI K GLVPS
Sbjct: 521 VCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPS 580
Query: 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLF 642
VVTYT LVDGL R+G+I + ++E+MKL+GC PNV+ YT+IINGLCQ GR +EAE LL
Sbjct: 581 VVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLS 640
Query: 643 KMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSN 702
M D GVSPNH+TY+++V+ + + G+LD A + V MV G +LN +YS+LL G V S
Sbjct: 641 AMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQ 700
Query: 703 KASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTD 762
K D+ + S LRE D E L +E GG +
Sbjct: 701 KGI--------------------DNSEESTVSDIALRETDPECINELISVVEQLGGCISG 740
Query: 763 FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLIL 822
FLV LC+ GR E++ +++++++ GVF KA+ I+ YC ++K+ C+E + L+L
Sbjct: 741 LCIFLVTRLCKEGRTDESNDLVQNVLERGVFLEKAMDIIMESYCSKKKHTKCMELITLVL 800
Query: 823 ESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELG 882
+SGFVPSF+S C VIQGL+ EG ++A+ LV +L NG+ EK+ VL Y+E L+ GDE G
Sbjct: 801 KSGFVPSFKSFCLVIQGLKKEGDAERARELVMELLTSNGVVEKSGVLTYVECLMEGDETG 860
Query: 883 KSIDLLNLIDQVHYRQRP 900
++++L+DQ+H R+RP
Sbjct: 861 DCSEVIDLVDQLHCRERP 878
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Vitis vinifera] gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 305/867 (35%), Positives = 485/867 (55%), Gaps = 35/867 (4%)
Query: 43 DTACQVSALLHKPNWQQNDILKSLVSHMPPHAASQVILLHGENTELGVRFFKWVCKQSTY 102
D + Q+ ++L +PNWQ++ L+ L+ + P S + + + + + FF W+ + +
Sbjct: 39 DLSAQLLSILSRPNWQKHPSLRKLLPSLTPSHVSSLFAFN-LDPQTALSFFNWIALRPGF 97
Query: 103 CYDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDDILKLIVALDGLSKDG---FK 159
++V+S +LN+++ L GVA K I +IK C S +D+L ++ ++ DG FK
Sbjct: 98 KHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCC-SIEDVLFVLEVFRKMNADGEFKFK 156
Query: 160 LNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMF 219
CY+ +LMSL+K L V+++L+ + + + +++N CK G V E++
Sbjct: 157 PTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELY 216
Query: 220 FCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLC 279
++++ G DT TSL+LGHCR + A++VF +M ++ R N V++T LIHGLC
Sbjct: 217 ASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQR-NEVSYTNLIHGLC 275
Query: 280 EVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAH 339
E GR++EA L +M E P+ RTYTVLI AL +AL+LF+EM K C+PN H
Sbjct: 276 EAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVH 335
Query: 340 TYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALM 399
TYTVLID LC+E K+DEA M +M + G P VVTYN LI+GYCK+G I AFE+L LM
Sbjct: 336 TYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLM 395
Query: 400 EKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQL 459
E +C PN RTYNEL+ GLC+ K +KA+ LL ++++ L P ITYN L+ G C+ L
Sbjct: 396 ESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDL 455
Query: 460 DIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITAL 519
+ A ++ + M+ GLVPD +T++ ID LCK G+ E A F + KG+ +E TAL
Sbjct: 456 ESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTAL 515
Query: 520 ADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGL 579
DG+CK GK A + ERM+ + L + N ++ LCKE K+KE ++ K+L G+
Sbjct: 516 IDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGV 575
Query: 580 VPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEM 639
P+VVTYTIL+ + + G A+ + M G P+V TYT ++ +G +E +
Sbjct: 576 KPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDD 635
Query: 640 LLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLV 699
++ KM + G+ P+ +TY++L+ +A G AF + MV GC+ + + S L+ L
Sbjct: 636 VIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLS 695
Query: 700 SSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGS 759
N+ + D+ S+ LE YE + K F E VEH G
Sbjct: 696 HENRMK---ETRSEIGIDSVSNTLE-----YEIALKLF--EKMVEH------------GC 733
Query: 760 TTD--FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLE 816
T D Y L+ C+ R+ EA ++ + + G+ P++ I S++ C CK Y + +
Sbjct: 734 TIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVR 793
Query: 817 FMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFR--YNGIEEKAAVLPYIEF 874
++ ++E+G +P ES+ ++ GL EG N++AK + L YN E VL I+
Sbjct: 794 LVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVL--IDG 851
Query: 875 LLTGDELGKSIDLLNLIDQVHYRQRPV 901
LL D + + +L++++++ + P+
Sbjct: 852 LLKRDLVDECSELIDIMEEKGCQPNPL 878
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 297/859 (34%), Positives = 482/859 (56%), Gaps = 24/859 (2%)
Query: 43 DTACQVSALLHKPNWQQNDILKSLVSHMPPHAASQVILLHGENTELGVRFFKWVCKQSTY 102
D + Q+ ++L +PNWQ++ L+ L+ + P S + + + + + FF W+ + +
Sbjct: 39 DLSAQLLSILSRPNWQKHPSLRKLLPSLTPSHVSSLFAFN-LDPQTALSFFNWIALRPGF 97
Query: 103 CYDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDDILKLIVALDGLSKDG---FK 159
++V+S +LN+++ L GVA K I +IK C S +D+L ++ ++ DG FK
Sbjct: 98 KHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCC-SIEDVLFVLEVFRKMNADGEFKFK 156
Query: 160 LNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMF 219
CY+ +LMSL+K L V+++L+ + + + +++N CK G V E++
Sbjct: 157 PTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELY 216
Query: 220 FCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLC 279
++++ G DT TSL+LGHCR + A++VF +M ++ R N V++T LIHGLC
Sbjct: 217 ASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQR-NEVSYTNLIHGLC 275
Query: 280 EVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAH 339
E GR++EA L +M E P+ RTYTVLI AL +AL+LF+EM K C+PN H
Sbjct: 276 EAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVH 335
Query: 340 TYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALM 399
TYTVLID LC+E K+DEA M +M + G P VVTYN LI+GYCK+G I AFE+L LM
Sbjct: 336 TYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLM 395
Query: 400 EKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQL 459
E +C PN RTYNEL+ GLC+ K +KA+ LL ++++ L P ITYN L+ G C+ L
Sbjct: 396 ESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDL 455
Query: 460 DIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITAL 519
+ A ++ + M+ GLVPD +T++ ID LCK G+ E A F + KG+ +E TAL
Sbjct: 456 ESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTAL 515
Query: 520 ADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGL 579
DG+CK GK A + ERM+ + L + N ++ LCKE K+KE ++ K+L G+
Sbjct: 516 IDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGV 575
Query: 580 VPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEM 639
P+VVTYTIL+ + + G A+ + M G P+V TYT ++ +G +E +
Sbjct: 576 KPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDD 635
Query: 640 LLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLV 699
++ KM + G+ P+ +TY++L+ +A G AF + MV GC+ + + S L+ L
Sbjct: 636 VIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLS 695
Query: 700 SSNKASGVLS-ISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGG 758
N+ S I S+ S + + + ++ E A +L +++ G
Sbjct: 696 HENRMKETRSEIGIDSVSNVNSVDI-----------ADVWKTLEYEIALKLFEKMVEHGC 744
Query: 759 ST-TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLE 816
+ Y L+ C+ R+ EA ++ + + G+ P++ I S++ C CK Y + +
Sbjct: 745 TIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVR 804
Query: 817 FMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFR--YNGIEEKAAVLPYIEF 874
++ ++E+G +P ES+ ++ GL EG N++AK + L YN E VL I+
Sbjct: 805 LVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVL--IDG 862
Query: 875 LLTGDELGKSIDLLNLIDQ 893
LL D + + +L++++++
Sbjct: 863 LLKRDLVDECSELIDIMEE 881
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Cucumis sativus] gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 287/866 (33%), Positives = 464/866 (53%), Gaps = 27/866 (3%)
Query: 42 NDTACQVSALLHKPNWQQNDILKSLVSHMPPHAASQVILLHGENTELGVRFFKWVCKQST 101
+D Q+ ++L +PNWQ++ LK+L+ + P S + L+ + + + FF W+ ++
Sbjct: 47 HDIPAQLFSILSRPNWQKHPSLKNLIPSIAPSHISALFALN-LDPQTALAFFNWIGQKHG 105
Query: 102 YCYDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDDILKLIVALDGLSKD----G 157
+ ++V S + +LN++V +A I +IK +DS ++ L ++ L +++
Sbjct: 106 FKHNVQSHVSMLNILVPNGYLRIAENMRILMIKS-TDSSENALFVLEMLRSMNRRVDAFK 164
Query: 158 FKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGE 217
FKL CY+ LLM L++ + +V+++++ D + +++N CK G V E
Sbjct: 165 FKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAE 224
Query: 218 MFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHG 277
++ ++++ G LDT TSL+LG+CR ++ A +F M + R N V++T LIHG
Sbjct: 225 LYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLR-NEVSYTNLIHG 283
Query: 278 LCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPN 337
CE R+DEA L +M E P+ RTYTV+I ALC + +AL++F EM K C+PN
Sbjct: 284 FCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPN 343
Query: 338 AHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLA 397
HTYTVLI LC + D+A + ML+ G P VVTYN LI+GYCK+G +A E+L+
Sbjct: 344 VHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILS 403
Query: 398 LMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREG 457
LME C PN RTYNEL+ G CR +KA+ LL ++++ L P+ +TYNIL+ G C+EG
Sbjct: 404 LMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEG 463
Query: 458 QLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATIT 517
L A K+ + M+ GLVPD +T++ ID LCK G E A F + +KGI +E +
Sbjct: 464 DLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYS 523
Query: 518 ALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKF 577
L DG+CK GK + + ++M+ + NS +D CKE KE + ++K
Sbjct: 524 TLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKR 583
Query: 578 GLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEA 637
+ P+ TYTIL+D L + A M + M G P+V YT I+ C GR K+A
Sbjct: 584 DIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDA 643
Query: 638 EMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAG 697
E+L+ KM G+ P+ + Y++ + A+ G +D AF I+ M GC+ + YS L+
Sbjct: 644 EVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKH 703
Query: 698 LVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG 757
L S+ K V S S +G + +D+ N R +D E L ++ G
Sbjct: 704 L-SNAKPKEVSSSSELSDLSSGVA-----SNDFS----NCWRRVDYEFTLDLFGKMAEHG 753
Query: 758 -GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCL 815
+ Y + LC+ G + A R+ + + G P + I S++GC C+ Y + +
Sbjct: 754 CAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAI 813
Query: 816 EFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFR--YNGIEEKAAVLPYIE 873
++++++E+ +P +S ++ GL EG +++AK + + YN E VL I+
Sbjct: 814 RWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVL--ID 871
Query: 874 FLLTGDELGKSIDLLNLID----QVH 895
LL K DL +++ Q+H
Sbjct: 872 GLLKKGLSDKCSDLFGIMETQGCQIH 897
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 290/864 (33%), Positives = 468/864 (54%), Gaps = 24/864 (2%)
Query: 37 SPETINDTACQVSALLHKPNWQQNDILKSLVSHMPPHAASQVILLHGENTELGVRFFKWV 96
S E +V A+L + W+ + LK L + H ++++ +H ++TE ++FF W+
Sbjct: 82 SREPFQAIVSRVCAILSRVQWKGSSELKQLSPQLKAHHVAEIVAVH-KDTESVIQFFYWI 140
Query: 97 CKQSTYCYDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDDILKLIVALDGLSKD 156
K+ Y +++N I +LN +V ++ A I +IK C + +++I ++ L+ +S
Sbjct: 141 SKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRN-EEEIRRVADFLNEISGM 199
Query: 157 GFKLNYPCYSC--LLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVR 214
GF + YSC LL+ LAK ++ A ++ +++ G S + + ++IN L K G VR
Sbjct: 200 GF--GFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVR 257
Query: 215 AGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTL 274
E+ ++ ++ D TSL+LGHCR +L AF VFD M KE PNSVT++TL
Sbjct: 258 EAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGC-DPNSVTYSTL 316
Query: 275 IHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRC 334
I+GLC GR+DEA + +EM EKG +P+ TYT+ I ALC I ++A+ L M + C
Sbjct: 317 INGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGC 376
Query: 335 KPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFE 394
+PN TYT LI L R GK++ A G+ KML++G P VTYN LIN C GR A +
Sbjct: 377 RPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALK 436
Query: 395 LLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFC 454
+ ME N +TYNE+++GLC KA+ L ++++ G P +TYN L++G+
Sbjct: 437 IFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYL 496
Query: 455 REGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEA 514
+G ++ A ++ + M G PD +T+ ++ G K GK E A+ +F MV+ G++P+
Sbjct: 497 TKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPV 556
Query: 515 TITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKI 574
+ T L DGH K+GK AL + ERM + N+ ++ L KEN+ E + K+
Sbjct: 557 SYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 616
Query: 575 LKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRF 634
+ GL+P+V+TYT L+DGL R G A + M+ C PN++TY+ +I GLCQ G+
Sbjct: 617 AEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKA 676
Query: 635 KEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSAL 694
EAE+LL +M G++P+ +T++ L+ GR+DHAF ++ MV GC+ N YS L
Sbjct: 677 DEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVL 736
Query: 695 LAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIE 754
L GL K +L + +A S H+ D ++ E L R+
Sbjct: 737 LKGL---QKECLLLEEKVAVQHEAVYSFSPHEKD------------VNFEIVSNLLARMS 781
Query: 755 SCG-GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYD 812
G T D Y+ LV LCR GR EA++++KD+ + G P + I S++ +CK + D
Sbjct: 782 EIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVD 841
Query: 813 DCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYI 872
L+ + I GF + +I L G+ ++A+ L ++ ++ +
Sbjct: 842 HALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLV 901
Query: 873 EFLLTGDELGKSIDLLNLIDQVHY 896
+ LL EL + LL++++ ++
Sbjct: 902 DGLLKEGELDLCMKLLHIMESKNF 925
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana] gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana] gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 286/840 (34%), Positives = 459/840 (54%), Gaps = 34/840 (4%)
Query: 38 PETINDTAC---QVSALLHKPNWQQNDILKSLVSHMPPHAASQVILLHGENTELGVRFFK 94
PE +D+ ++ ++L KPNW ++ LKS+VS + P S + L + + + F
Sbjct: 53 PEEESDSMSVPHRLLSILSKPNWHKSPSLKSMVSAISPSHVSSLFSL-DLDPKTALNFSH 111
Query: 95 WVCKQSTYCYDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDDILKLIVALDGLS 154
W+ + Y + V S LL L+++ GV K + +IK C DS D L ++ ++
Sbjct: 112 WISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSC-DSVGDALYVLDLCRKMN 170
Query: 155 KDG-FKLNYP----CYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCK 209
KD F+L Y CY+ LL SLA+ L V+++++ D + Y ++N CK
Sbjct: 171 KDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCK 230
Query: 210 SGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSV 269
G V + ++++ G D TSL++G+C+ DL AFKVF+ M + R N V
Sbjct: 231 LGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRR-NEV 289
Query: 270 TFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEM 329
+T LIHGLC R+DEA L +M + P+ RTYTVLIK+LC +AL+L EM
Sbjct: 290 AYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEM 349
Query: 330 VVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRI 389
KPN HTYTVLID LC + K ++A + G+ML+ G P V+TYN LINGYCK+G I
Sbjct: 350 EETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMI 409
Query: 390 IAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNIL 449
A +++ LME R PN RTYNEL++G C+ N +KA+ +L ++++ + PD +TYN L
Sbjct: 410 EDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSL 468
Query: 450 VDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGI 509
+DG CR G D A ++ + M+ GLVPD +T+TS+ID LCK + E A F + +KG+
Sbjct: 469 IDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGV 528
Query: 510 SPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYA 569
+P+ TAL DG+CK GK EA ++ E+M+ L N+ + LC + KLKE
Sbjct: 529 NPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATL 588
Query: 570 MFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLC 629
+ K++K GL P+V T TIL+ L + G+ A S + M +G P+ HTYT I C
Sbjct: 589 LEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYC 648
Query: 630 QRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSN 689
+ GR +AE ++ KM + GVSP+ TYS L++ + G+ + AF ++ M GC+ + +
Sbjct: 649 REGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQH 708
Query: 690 VYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRL 749
+ +L+ L+ S C A S+ +E D + L +M VEH+
Sbjct: 709 TFLSLIKHLLEMKYGKQKGSEPELC---AMSNMMEFD------TVVELLEKM-VEHSVT- 757
Query: 750 RDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS-GVFPAKAI-TSIIGCYCK 807
Y L++ +C G + A+++ + ++ G+ P++ + +++ C CK
Sbjct: 758 ---------PNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCK 808
Query: 808 ERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAA 867
+K+++ + ++ ++ G +P ES +I GL +G ++ ++ +L + E++ A
Sbjct: 809 LKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELA 868
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 902 | ||||||
| TAIR|locus:2098495 | 880 | AT3G07290 "AT3G07290" [Arabido | 0.788 | 0.807 | 0.571 | 6.4e-218 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.845 | 0.833 | 0.347 | 1.9e-127 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.554 | 0.814 | 0.318 | 9.4e-66 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.596 | 0.848 | 0.312 | 1.5e-65 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.616 | 0.898 | 0.301 | 1.5e-65 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.585 | 0.828 | 0.298 | 4.1e-65 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.572 | 0.801 | 0.297 | 6.7e-65 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.711 | 0.851 | 0.259 | 2.3e-62 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.584 | 0.722 | 0.277 | 3.7e-64 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.549 | 0.829 | 0.286 | 4.7e-64 |
| TAIR|locus:2098495 AT3G07290 "AT3G07290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2105 (746.1 bits), Expect = 6.4e-218, P = 6.4e-218
Identities = 410/718 (57%), Positives = 519/718 (72%)
Query: 1 MLIHLTKLTKHGLRPHGLHXXXXXXXXXXXXXXXXKSPETINDTACQVSALLHKPNWQQN 60
+LIH+ K + G H S + + A V++LL PNW++N
Sbjct: 2 LLIHIRSTRK--ILALGRHVFPSNAFFSVSSRPSLSSSDEV--AAHDVASLLKTPNWEKN 57
Query: 61 DILKSLVSHMPPHAASQVILLHGENTELGVRFFKWVCKQSTYCYDVNSRIHLLNLVVSCN 120
LKSLVSHM P+ ASQVI L + ++ VRFF WVCK S+YC+D + LL L+VS
Sbjct: 58 SSLKSLVSHMNPNVASQVISLQRSDNDICVRFFMWVCKHSSYCFDPTQKNQLLKLIVSSG 117
Query: 121 LYGVAHKAIIELIKECSDSKDDILKLIVALDGLSKD-GFKLNYPCYSCLLMSLAKLDLGF 179
LY VAH I+ LIKECS + ++LKL+ D L + GF+LNYPCYS LLMSLAKLDLGF
Sbjct: 118 LYRVAHAVIVALIKECSRCEKEMLKLMYCFDELREVFGFRLNYPCYSSLLMSLAKLDLGF 177
Query: 180 VAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLV 239
+AY + ++ ADGFV+ IDYR+++NALCK+G A EMF ++LK GF LD+HI TSL+
Sbjct: 178 LAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLL 237
Query: 240 LGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGW 299
LG CRG +L++A KVFDVMSKE + PNSV+++ LIHGLCEVGRL+EAF LKD+M EKG
Sbjct: 238 LGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGC 297
Query: 300 QPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANG 359
QPSTRTYTVLIKALCD L DKA +LFDEM+ + CKPN HTYTVLID LCR+GKI+EANG
Sbjct: 298 QPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANG 357
Query: 360 MCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLC 419
+C KM++D FP V+TYN LINGYCK GR++ AFELL +MEKR CKPN+RT+NELMEGLC
Sbjct: 358 VCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLC 417
Query: 420 RMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGF 479
R+ K YKAVHLLKR++D GL PD ++YN+L+DG CREG ++ A K+ +SM+ F + PD
Sbjct: 418 RVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCL 477
Query: 480 TFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERM 539
TFT+II+ CK GK ++A+ F GLM++KGIS DE T T L DG CK GKT +AL I E +
Sbjct: 478 TFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETL 537
Query: 540 VQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNI 599
V+ L TPH LN LD+L K K+KEE AM GKI K GLVPSVVTYT LVDGL R+G+I
Sbjct: 538 VKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDI 597
Query: 600 ALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSIL 659
+ ++E+MKL+GC PNV+ YT+IINGLCQ GR +EAE LL M D GVSPNH+TY+++
Sbjct: 598 TGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVM 657
Query: 660 VRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSD 717
V+ + + G+LD A + V MV G +LN +YS+LL G V S K G+ + S SD
Sbjct: 658 VKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQK--GIDNSEESTVSD 713
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1159 (413.0 bits), Expect = 1.9e-127, Sum P(2) = 1.9e-127
Identities = 275/791 (34%), Positives = 430/791 (54%)
Query: 38 PETINDTAC---QVSALLHKPNWQQNDILKSLVSHMPPHAASQVILLHGENTELGVRFFK 94
PE +D+ ++ ++L KPNW ++ LKS+VS + P S + L + + + F
Sbjct: 53 PEEESDSMSVPHRLLSILSKPNWHKSPSLKSMVSAISPSHVSSLFSLDLD-PKTALNFSH 111
Query: 95 WVCKQSTYCYDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDDILKLIVALDGLS 154
W+ + Y + V S LL L+++ GV K + +IK C DS D L ++ ++
Sbjct: 112 WISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSC-DSVGDALYVLDLCRKMN 170
Query: 155 KDG-FKLNYP----CYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCK 209
KD F+L Y CY+ LL SLA+ L V+++++ D + Y ++N CK
Sbjct: 171 KDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCK 230
Query: 210 SGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSV 269
G V + ++++ G D TSL++G+C+ DL AFKVF+ M + R N V
Sbjct: 231 LGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRR-NEV 289
Query: 270 TFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEM 329
+T LIHGLC R+DEA L +M + P+ RTYTVLIK+LC +AL+L EM
Sbjct: 290 AYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEM 349
Query: 330 VVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRI 389
KPN HTYTVLID LC + K ++A + G+ML+ G P V+TYN LINGYCK+G I
Sbjct: 350 EETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMI 409
Query: 390 IAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNIL 449
A +++ LME R PN RTYNEL++G C+ N +KA+ +L ++++ + PD +TYN L
Sbjct: 410 EDAVDVVELMESRKLSPNTRTYNELIKGYCKSNV-HKAMGVLNKMLERKVLPDVVTYNSL 468
Query: 450 VDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGI 509
+DG CR G D A ++ + M+ GLVPD +T+TS+ID LCK + E A F + +KG+
Sbjct: 469 IDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGV 528
Query: 510 SPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYA 569
+P+ TAL DG+CK GK EA ++ E+M+ L N+ + LC + KLKE
Sbjct: 529 NPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATL 588
Query: 570 MFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLC 629
+ K++K GL P+V T TIL+ L + G+ A S + M +G P+ HTYT I C
Sbjct: 589 LEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYC 648
Query: 630 QRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSN 689
+ GR +AE ++ KM + GVSP+ TYS L++ + G+ + AF ++ M GC+ + +
Sbjct: 649 REGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQH 708
Query: 690 VYSALLAGLVSSN--KASG----VLSISTSCHSDAGSSRLE----H----DDDDYERSSK 735
+ +L+ L+ K G + ++S D LE H + YE+
Sbjct: 709 TFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLIL 768
Query: 736 NFLREMDVEHAFRLRDRIESCGG-STTDF-YNFLVVELCRAGRIVEADRIMKDIMKSGVF 793
++ A ++ D ++ G S ++ +N L+ C+ + EA +++ D++ G
Sbjct: 769 GICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHL 828
Query: 794 PAKAITSIIGC 804
P ++ C
Sbjct: 829 PQLESCKVLIC 839
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 161/505 (31%), Positives = 261/505 (51%)
Query: 165 YSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVL 224
+S LL ++AK+ + + K+ G + Y +IN LC+ + +++
Sbjct: 68 FSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMM 127
Query: 225 KHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRL 284
K G+ SL+ G C GN + EA + D M E Y+P++VTFTTL+HGL + +
Sbjct: 128 KLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV-EMGYQPDTVTFTTLVHGLFQHNKA 186
Query: 285 DEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVL 344
EA +L + M KG QP TY +I LC D AL+L ++M + + + Y+ +
Sbjct: 187 SEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTV 246
Query: 345 IDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTC 404
ID LC+ +D+A + +M G P V TY+ LI+ C GR A LL+ M +R
Sbjct: 247 IDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKI 306
Query: 405 KPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALK 464
PN+ T+N L++ + K +A L ++ + P+ +TYN L++GFC +LD A +
Sbjct: 307 NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQ 366
Query: 465 IFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHC 524
IF M +PD T+ ++I+G CK K F M ++G+ + T T L G
Sbjct: 367 IFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFF 426
Query: 525 KNGKTGEALMIFERMVQNTDLKTPHVL--NSFLDVLCKENKLKEEYAMFGKILKFGLVPS 582
+ A M+F++MV +D P+++ N+ LD LCK KL++ +F + K + P
Sbjct: 427 QASDCDNAQMVFKQMV--SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPD 484
Query: 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLF 642
+ TY I+ +G+ +AG + + + L G P+V Y +I+G C++G +EA L
Sbjct: 485 IYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFI 544
Query: 643 KMFDLGVSPNHITYSILVRAHASTG 667
KM + G P+ TY+ L+RAH G
Sbjct: 545 KMKEDGPLPDSGTYNTLIRAHLRDG 569
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 172/550 (31%), Positives = 276/550 (50%)
Query: 165 YSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVL 224
++ LL ++AK+ V ++ K+ V Y +IN C+ + +++
Sbjct: 88 FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMM 147
Query: 225 KHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRL 284
K G+ +SL+ G+C G + +A + D M E YRP+++TFTTLIHGL +
Sbjct: 148 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV-EMGYRPDTITFTTLIHGLFLHNKA 206
Query: 285 DEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVL 344
EA +L D M ++G QP+ TY V++ LC TD AL+L ++M + + + + +
Sbjct: 207 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTI 266
Query: 345 IDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTC 404
ID LC+ +D+A + +M G P VVTY+ LI+ C GR A +LL+ M ++
Sbjct: 267 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 326
Query: 405 KPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALK 464
PN+ T+N L++ + K +A L ++ + PD TYN LV+GFC +LD A +
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQ 386
Query: 465 IFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHC 524
+F M PD T+ ++I G CK + E F M +G+ D T T L G
Sbjct: 387 MFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 446
Query: 525 KNGKTGEALMIFERMVQN---TDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVP 581
+G A +F++MV + D+ T +L LD LC KL++ +F + K +
Sbjct: 447 HDGDCDNAQKVFKQMVSDGVPPDIMTYSIL---LDGLCNNGKLEKALEVFDYMQKSEIKL 503
Query: 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLL 641
+ YT +++G+ +AG + + + L G PNV TY +I+GLC + +EA LL
Sbjct: 504 DIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALL 563
Query: 642 FKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSS 701
KM + G PN TY+ L+RAH G + +++ M C+ V A GLV++
Sbjct: 564 KKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM--RSCRF---VGDASTIGLVAN 618
Query: 702 NKASGVLSIS 711
G L S
Sbjct: 619 MLHDGRLDKS 628
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 170/564 (30%), Positives = 278/564 (49%)
Query: 181 AYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLK-HGFCLDTHICTSLV 239
A +F +I + + ID+ + +A+ ++ + FC+ ++ +G D + T ++
Sbjct: 54 AIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDL-VLGFCKGMELNGIEHDMYTMTIMI 112
Query: 240 LGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGW 299
+CR L AF V K Y P+++TF+TL++G C GR+ EA +L D M E
Sbjct: 113 NCYCRKKKLLFAFSVLGRAWK-LGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ 171
Query: 300 QPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANG 359
+P T + LI LC +AL L D MV +P+ TY +++RLC+ G A
Sbjct: 172 RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALD 231
Query: 360 MCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLC 419
+ KM + VV Y+++I+ CK G A L ME + K ++ TY+ L+ GLC
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 291
Query: 420 RMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGF 479
K +L+ ++ + PD +T++ L+D F +EG+L A +++N M G+ PD
Sbjct: 292 NDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTI 351
Query: 480 TFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERM 539
T+ S+IDG CK AN F LMV KG PD T + L + +CK + + + +F +
Sbjct: 352 TYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREI 411
Query: 540 VQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNI 599
+ N+ + C+ KL +F +++ G+ PSVVTY IL+DGL G +
Sbjct: 412 SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 471
Query: 600 ALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSIL 659
A+ + E M+ + + Y +II+G+C + +A L + D GV P+ +TY+++
Sbjct: 472 NKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVM 531
Query: 660 VRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALL-AGLVSSNKASGVLSISTS--CHS 716
+ G L A + M +GC + Y+ L+ A L S S V I C
Sbjct: 532 IGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGF 591
Query: 717 DAGSSRLEHDDD--DYERSSKNFL 738
A SS ++ D R K+FL
Sbjct: 592 SADSSTIKMVIDMLSDRRLDKSFL 615
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 159/533 (29%), Positives = 269/533 (50%)
Query: 165 YSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVL 224
+S L ++AK + A+ ++ G + +IN C+ + +++
Sbjct: 91 FSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKII 150
Query: 225 KHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRL 284
K G+ +T ++L+ G C + EA ++ D M E ++P+ +T TL++GLC G+
Sbjct: 151 KLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV-EMGHKPDLITINTLVNGLCLSGKE 209
Query: 285 DEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVL 344
EA L D+M E G QP+ TY ++ +C T A+ L +M + K +A Y+++
Sbjct: 210 AEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 269
Query: 345 IDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTC 404
ID LC+ G +D A + +M G ++TYN+LI G+C GR +LL M KR
Sbjct: 270 IDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKI 329
Query: 405 KPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALK 464
PN+ T++ L++ + K +A L K ++ G+ PD ITY L+DGFC+E LD A +
Sbjct: 330 NPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQ 389
Query: 465 IFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHC 524
+ + M G P+ TF +I+G CK + + F M +G+ D T L G C
Sbjct: 390 MVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 449
Query: 525 KNGKTGEALMIFERMVQNTDLKTPHVLNS--FLDVLCKENKLKEEYAMFGKILKFGLVPS 582
+ GK A +F+ MV P+++ LD LC + ++ +F KI K +
Sbjct: 450 ELGKLNVAKELFQEMVSRK--VPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELD 507
Query: 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLF 642
+ Y I++ G+ A + A + + L G P V TY ++I GLC++G EAE+L
Sbjct: 508 IGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFR 567
Query: 643 KMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALL 695
KM + G +P+ TY+IL+RAH G + K++ + G ++++ ++
Sbjct: 568 KMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVI 620
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 155/521 (29%), Positives = 270/521 (51%)
Query: 165 YSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVL 224
++ L ++AK + A+ ++ + G S +IN C+ + +++
Sbjct: 91 FNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIM 150
Query: 225 KHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRL 284
K G+ DT I +L+ G C + EA ++ D M E ++P +T TL++GLC G++
Sbjct: 151 KLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMV-EMGHKPTLITLNTLVNGLCLNGKV 209
Query: 285 DEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVL 344
+A L D M E G+QP+ TY ++ +C T A+ L +M + K +A Y+++
Sbjct: 210 SDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 269
Query: 345 IDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTC 404
ID LC++G +D A + +M G ++TYN LI G+C GR +LL M KR
Sbjct: 270 IDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKI 329
Query: 405 KPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALK 464
PN+ T++ L++ + K +A LLK ++ G+ P+ ITYN L+DGFC+E +L+ A++
Sbjct: 330 SPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQ 389
Query: 465 IFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHC 524
+ + M G PD TF +I+G CK + + F M +G+ + T L G C
Sbjct: 390 MVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFC 449
Query: 525 KNGKTGEALMIFERMVQNTDLKTPHVLNS--FLDVLCKENKLKEEYAMFGKILKFGLVPS 582
++GK A +F+ MV P +++ LD LC +L++ +FGKI K +
Sbjct: 450 QSGKLEVAKKLFQEMVSRR--VRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELD 507
Query: 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLF 642
+ Y I++ G+ A + A + + L G + Y ++I+ LC++ +A++L
Sbjct: 508 IGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFR 567
Query: 643 KMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANG 683
KM + G +P+ +TY+IL+RAH A +++ M ++G
Sbjct: 568 KMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSG 608
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 170/654 (25%), Positives = 309/654 (47%)
Query: 247 DLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTY 306
D A ++F++ SK+ ++ P + ++ L G D+ + ++M + T T+
Sbjct: 62 DDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTF 121
Query: 307 TVLIKALCDISLTDKALSLFDEMVVK-RCKPNAHTYTVLIDRLCREGKIDEANGMCGKML 365
+LI++ L D+ LS+ D M+ + KP+ H Y +++ L + KM
Sbjct: 122 LILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMS 181
Query: 366 QDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSY 425
G P V T+NVLI C+ ++ A +L M P+ +T+ +M+G
Sbjct: 182 VWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLD 241
Query: 426 KAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIF-GLVPDGFTFTSI 484
A+ + +++V+ G ++ N++V GFC+EG+++ AL MS G PD +TF ++
Sbjct: 242 GALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTL 301
Query: 485 IDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTD 544
++GLCK G + A +M+++G PD T ++ G CK G+ EA+ + ++M+
Sbjct: 302 VNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDC 361
Query: 545 LKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMS 604
N+ + LCKEN+++E + + G++P V T+ L+ GL N +AM
Sbjct: 362 SPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAME 421
Query: 605 MIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHA 664
+ E M+ GC P+ TY ++I+ LC +G+ EA +L +M G + + ITY+ L+
Sbjct: 422 LFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC 481
Query: 665 STGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLE 724
+ A +I M +G NS Y+ L+ GL S + + + G +
Sbjct: 482 KANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME-GQ---K 537
Query: 725 HDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDF--YNFLVVELCRAGRIVEADR 782
D Y +F R D++ A + + S G D Y L+ LC+AGR+ A +
Sbjct: 538 PDKYTYNSLLTHFCRGGDIKKAADIVQAMTS-NGCEPDIVTYGTLISGLCKAGRVEVASK 596
Query: 783 IMKDIMKSGV-FPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGL 840
+++ I G+ A +I ++RK + + +LE P S+ V +GL
Sbjct: 597 LLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGL 656
Query: 841 -QSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893
G ++A + + +L + E +++ E LLT + L+N++ Q
Sbjct: 657 CNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQ 710
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 149/536 (27%), Positives = 265/536 (49%)
Query: 153 LSKDGFKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGL 212
L GF ++ + L+ SL ++ +A+ V+ ++ G ++ ++NALCK G
Sbjct: 191 LRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGK 250
Query: 213 VRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFT 272
+ F +V + G D +L+ + ++EAF++ + M + + P T+
Sbjct: 251 MEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKG-FSPGVYTYN 309
Query: 273 TLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALC---DISLTDKALSLFDEM 329
T+I+GLC+ G+ + A + EM G P + TY L+ C D+ T+K +F +M
Sbjct: 310 TVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEK---VFSDM 366
Query: 330 VVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRI 389
+ P+ ++ ++ R G +D+A + + G P V Y +LI GYC++G I
Sbjct: 367 RSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMI 426
Query: 390 IAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNIL 449
A L M ++ C ++ TYN ++ GLC+ +A L + + LFPD T IL
Sbjct: 427 SVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTIL 486
Query: 450 VDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGI 509
+DG C+ G L A+++F M + D T+ +++DG K+G + A + MV K I
Sbjct: 487 IDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEI 546
Query: 510 SPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYA 569
P + + L + C G EA +++ M+ T + NS + C+ + +
Sbjct: 547 LPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGES 606
Query: 570 MFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMK--LAGCPPNVHTYTVIING 627
K++ G VP ++Y L+ G R N++ A +++ M+ G P+V TY I++G
Sbjct: 607 FLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHG 666
Query: 628 LCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANG 683
C++ + KEAE++L KM + GV+P+ TY+ ++ S L AF+I M+ G
Sbjct: 667 FCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRG 722
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 144/502 (28%), Positives = 248/502 (49%)
Query: 189 IADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDL 248
+ F L ++ + + + ++G + G F ++ HG D CT+L+ G CR
Sbjct: 94 VNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKT 153
Query: 249 KEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTV 308
++A K+ +++ + P+ +T+ +I G C+ G ++ A S+ D M P TY
Sbjct: 154 RKAAKILEILEGSGAV-PDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNT 209
Query: 309 LIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDG 368
++++LCD +A+ + D M+ + C P+ TYT+LI+ CR+ + A + +M G
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRG 269
Query: 369 HFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAV 428
P VVTYNVL+NG CK+GR+ A + L M C+PN+ T+N ++ +C + A
Sbjct: 270 CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAE 329
Query: 429 HLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGL 488
LL ++ G P +T+NIL++ CR+G L A+ I M G P+ ++ ++ G
Sbjct: 330 KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGF 389
Query: 489 CKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTP 548
CK K + A + MV +G PD T + CK+GK +A+ I ++
Sbjct: 390 CKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVL 449
Query: 549 HVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEV 608
N+ +D L K K + + ++ L P +TY+ LV GL R G + A+
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509
Query: 609 MKLAGCPPNVHTYTVIINGLCQRGRFKEA-EMLLFKMFDLGVSPNHITYSILVRAHASTG 667
+ G PN T+ I+ GLC+ + A + L+F M + G PN +Y+IL+ A G
Sbjct: 510 FERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVF-MINRGCKPNETSYTILIEGLAYEG 568
Query: 668 RLDHAFKIVSFMVANGCQLNSN 689
A ++++ + G S+
Sbjct: 569 MAKEALELLNELCNKGLMKKSS 590
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SFV9 | PP218_ARATH | No assigned EC number | 0.5489 | 0.9279 | 0.9511 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 902 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-30 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-20 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-19 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-19 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 9e-30
Identities = 107/398 (26%), Positives = 177/398 (44%), Gaps = 23/398 (5%)
Query: 249 KEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTV 308
KEAF+ ++ P TF L+ +D A + + E G + + YT
Sbjct: 423 KEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTT 477
Query: 309 LIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDG 368
LI D +F EMV + N HT+ LID R G++ +A G G M
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 369 HFPGVVTYNVLINGYCKQGRIIAAFELLALM--EKRTCKPNIRTYNELMEGLC------R 420
P V +N LI+ + G + AF++LA M E P+ T LM+ R
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 421 MNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFT 480
+ Y+ +H + + G P+ Y I V+ ++G D AL I++ M G+ PD
Sbjct: 598 AKEVYQMIH--EYNIKG--TPE--VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 481 FTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGE-ALMIFERM 539
F++++D G + A K+GI + ++L G C N K + AL ++E +
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM-GACSNAKNWKKALELYEDI 710
Query: 540 VQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNI 599
T +N+ + LC+ N+L + + ++ + GL P+ +TY+IL+ R +
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770
Query: 600 ALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEA 637
+ + ++ K G PN+ I GLC R RF++A
Sbjct: 771 DVGLDLLSQAKEDGIKPNLVMCRCIT-GLCLR-RFEKA 806
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 94.6 bits (235), Expect = 8e-20
Identities = 106/448 (23%), Positives = 192/448 (42%), Gaps = 22/448 (4%)
Query: 193 FVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAF 252
F L A Y +++ A +R + + V GF D ++ ++L H + L +A
Sbjct: 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178
Query: 253 KVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKA 312
++FD M + N ++ T+I GL + G EAF+L EM E G RT+ V+++A
Sbjct: 179 RLFDEMPER-----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233
Query: 313 LCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPG 372
+ L ++ + LID + G I++A + M +
Sbjct: 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----T 289
Query: 373 VVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLK 432
V +N ++ GY G A L M + T++ ++ R+ A
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349
Query: 433 RVVDGGLFPDEITYNI-LVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKL 491
++ G FP +I N LVD + + G+++ A +F+ M L+ ++ ++I G
Sbjct: 350 GLIRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNH 404
Query: 492 GKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVL 551
G+ A F M+ +G++P+ T A+ +G + + IF+ M +N +K P +
Sbjct: 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK-PRAM 463
Query: 552 N--SFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVM 609
+ +++L +E L E YAM I + P+V + L+ N+ L E +
Sbjct: 464 HYACMIELLGREGLLDEAYAM---IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520
Query: 610 KLAGCPPNVHTYTVIINGLCQRGRFKEA 637
P ++ Y V++N GR EA
Sbjct: 521 -YGMGPEKLNNYVVLLNLYNSSGRQAEA 547
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 1e-19
Identities = 108/497 (21%), Positives = 186/497 (37%), Gaps = 80/497 (16%)
Query: 347 RLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCK-QGRIIAAFELLALMEKRTCK 405
RL R+G+I + + M + G Y+ CK Q + AF L+
Sbjct: 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---- 434
Query: 406 PNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKI 465
P + T+N LM A+ +L+ V + GL D Y L+ + G++D ++
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 466 FNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCK 525
F+ M G+ + TF ++IDG + G+ A G +G+M K + PD AL +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 526 NGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVT 585
+G A + M T P + P +T
Sbjct: 555 SGAVDRAFDVLAEMKAET---HP------------------------------IDPDHIT 581
Query: 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMF 645
L+ AG + A + +++ YT+ +N Q+G + A + M
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641
Query: 646 DLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKAS 705
GV P+ + +S LV G LD AF+I+ G +L + YS+L+
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG--------- 692
Query: 706 GVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG-GSTTDFY 764
+C S+A + + A L + I+S T
Sbjct: 693 -------AC-SNAK----------------------NWKKALELYEDIKSIKLRPTVSTM 722
Query: 765 NFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYC-KERKYDDCLEFMNLILE 823
N L+ LC ++ +A ++ ++ + G+ P SI+ ++ D L+ ++ E
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782
Query: 824 SGFVPSFESHCTVIQGL 840
G P+ C I GL
Sbjct: 783 DGIKPNL-VMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 1e-19
Identities = 117/489 (23%), Positives = 189/489 (38%), Gaps = 67/489 (13%)
Query: 202 SVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKE 261
SVI+A G R G V+K GF +D +C SL+ + EA KVF M
Sbjct: 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-- 350
Query: 262 ASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDK 321
++V++T +I G + G D+A M + P T ++ A + D
Sbjct: 351 ---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407
Query: 322 ALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHF---PGVVTYNV 378
+ L + K LI+ + ID+A L+ H V+++
Sbjct: 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA-------LEVFHNIPEKDVISWTS 460
Query: 379 LINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMN--KSYKAVHLLKRVVD 436
+I G R A M T KPN T + R+ K +H V+
Sbjct: 461 IIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIH--AHVLR 517
Query: 437 GGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPEL 496
G+ D N L+D + R G+++ A FNS D ++ ++ G GK +
Sbjct: 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-----KDVVSWNILLTGYVAHGKGSM 572
Query: 497 ANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLD 556
A F MV+ G++PDE T +L ++G + L F M +
Sbjct: 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE--------------- 617
Query: 557 VLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPP 616
K+ + P++ Y +VD L RAG + A + I M + P
Sbjct: 618 -------------------KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT---P 655
Query: 617 NVHTYTVIINGLCQRGRFKE-AEMLLFKMFDLGVSPNHITYSILV-RAHASTGRLDHAFK 674
+ + ++N C+ R E E+ +F+L PN + Y IL+ +A G+ D +
Sbjct: 656 DPAVWGALLNA-CRIHRHVELGELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVAR 712
Query: 675 IVSFMVANG 683
+ M NG
Sbjct: 713 VRKTMRENG 721
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 88.8 bits (220), Expect = 6e-18
Identities = 117/495 (23%), Positives = 201/495 (40%), Gaps = 61/495 (12%)
Query: 223 VLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVG 282
V++ GF LD + +L+ + + D+ A VFD M R + +++ +I G E G
Sbjct: 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENG 267
Query: 283 RLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEM---VVKRC-KPNA 338
E L M E P T T +I A C++ L D+ L EM VVK +
Sbjct: 268 ECLEGLELFFTMRELSVDPDLMTITSVISA-CEL-LGDERLG--REMHGYVVKTGFAVDV 323
Query: 339 HTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLAL 398
LI G EA + +M V++ +I+GY K G A E AL
Sbjct: 324 SVCNSLIQMYLSLGSWGEAEKVFSRM----ETKDAVSWTAMISGYEKNGLPDKALETYAL 379
Query: 399 MEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQ 458
ME+ P+ T ++ + V L + GL + N L++ + +
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
Query: 459 LDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITA 518
+D AL++F+++ D ++TSII GL + A FF M+ + P+ T+ A
Sbjct: 440 IDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIA 494
Query: 519 LADGHCKNGKTGEALMIFERMVQNTDLKTPHVL-----------NSFLDVLCKENKLKEE 567
A C + G ALM + + HVL N+ LD+ + ++
Sbjct: 495 -ALSAC--ARIG-ALMCGKEI-------HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543
Query: 568 YAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIING 627
+ F K VV++ IL+ G G ++A+ + M +G P+ T+ ++
Sbjct: 544 WNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598
Query: 628 LCQRGRFKEAEMLLFKM-FDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFM------- 679
+ G + M ++PN Y+ +V G+L A+ ++ M
Sbjct: 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPA 658
Query: 680 ----VANGCQLNSNV 690
+ N C+++ +V
Sbjct: 659 VWGALLNACRIHRHV 673
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 77.8 bits (193), Expect = 6e-18
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 266 PNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCD 315
P+ VT+ TLI G C+ G+++EA L +EM ++G +P+ TY++LI LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 1e-16
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 371 PGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCR 420
P VVTYN LI+GYCK+G++ A +L M+KR KPN+ TY+ L++GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.4 bits (179), Expect = 5e-16
Identities = 25/50 (50%), Positives = 40/50 (80%)
Query: 441 PDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCK 490
PD +TYN L+DG+C++G+++ ALK+FN M G+ P+ +T++ +IDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.7 bits (172), Expect = 4e-15
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 581 PSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ 630
P VVTY L+DG + G + A+ + MK G PNV+TY+++I+GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 8e-15
Identities = 112/514 (21%), Positives = 186/514 (36%), Gaps = 83/514 (16%)
Query: 275 IHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCD----ISLTDKALSLFDEMV 330
+ LC G+L++A L + M E Y L + LC+ + + S
Sbjct: 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSH 116
Query: 331 VKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRII 390
++ R G++ A + GKM + F ++NVL+ GY K G
Sbjct: 117 PSL---GVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLF----SWNVLVGGYAKAGYFD 169
Query: 391 AAFELLALMEKRTCKPNIRTYN-------------------------------ELMEGLC 419
A L M +P++ T+ +++ L
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229
Query: 420 RMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGF 479
M V + V D D I++N ++ G+ G+ L++F +M + PD
Sbjct: 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289
Query: 480 TFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERM 539
T TS+I LG L G +VK G + D + +L + G GEA +F RM
Sbjct: 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
Query: 540 -----VQNTDLKTPHVLNSFLDVLCKENKLKEEY----------------AMFGKI---- 574
V T + + + N D + L E+ A G +
Sbjct: 350 ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409
Query: 575 ------LKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPP--NVHTYTVIIN 626
+ GL+ VV L++ + I A +EV P +V ++T II
Sbjct: 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKA---LEVFH---NIPEKDVISWTSIIA 463
Query: 627 GLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL 686
GL R EA ++ F+ L + PN +T + A A G L +I + ++ G
Sbjct: 464 GLRLNNRCFEA-LIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522
Query: 687 NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGS 720
+ + +ALL V + + + S D S
Sbjct: 523 DGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVS 556
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 1e-14
Identities = 55/233 (23%), Positives = 110/233 (47%), Gaps = 7/233 (3%)
Query: 198 IDYRSVINALCKSGLV-RAGEMFFCRVLKHGFCLDTHICTSLVLGHC-RGNDLKEAFKVF 255
I +++ A +G V RA E++ +++ T ++ + C + D A ++
Sbjct: 580 ITVGALMKACANAGQVDRAKEVY--QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637
Query: 256 DVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCD 315
D M K+ +P+ V F+ L+ G LD+AF + + ++G + T +Y+ L+ A +
Sbjct: 638 DDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696
Query: 316 ISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVT 375
KAL L++++ + +P T LI LC ++ +A + +M + G P +T
Sbjct: 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756
Query: 376 YNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLC-RMNKSYKA 427
Y++L+ ++ +LL+ ++ KPN+ + GLC R + A
Sbjct: 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCLRRFEKACA 808
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 1e-14
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 301 PSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCR 350
P TY LI C ++AL LF+EM + KPN +TY++LID LC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 3e-14
Identities = 75/319 (23%), Positives = 135/319 (42%), Gaps = 53/319 (16%)
Query: 179 FVAYAVFVKLIADGFVLSAIDYRSVINALCKS---GLVRAGEMFFCRVLKHGFCLDTHIC 235
A+A+F ++ DG S + R+ + L S G RAG+ C VLK G DT +
Sbjct: 206 REAFALFREMWEDG---SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262
Query: 236 TSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMC 295
+L+ + + D+++A VFD M ++ + NS+ +HG E EA L EM
Sbjct: 263 CALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSE-----EALCLYYEMR 317
Query: 296 EKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKID 355
+ G + T++++I R ++
Sbjct: 318 DSG-----------------------------------VSIDQFTFSIMIRIFSRLALLE 342
Query: 356 EANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELM 415
A +++ G +V L++ Y K GR+ A + M ++ N+ ++N L+
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALI 398
Query: 416 EGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCR-EGQLDIALKIFNSMS-IFG 473
G + KAV + +R++ G+ P+ +T+ + V CR G + +IF SMS
Sbjct: 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTF-LAVLSACRYSGLSEQGWEIFQSMSENHR 457
Query: 474 LVPDGFTFTSIIDGLCKLG 492
+ P + +I+ L + G
Sbjct: 458 IKPRAMHYACMIELLGREG 476
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 1e-13
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 616 PNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHA 664
P+V TY +I+G C++G+ +EA L +M G+ PN TYSIL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 2e-13
Identities = 87/455 (19%), Positives = 171/455 (37%), Gaps = 59/455 (12%)
Query: 246 NDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRT 305
+EA ++F+++ + + T+ L+ + + ++ + G++P
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 306 YTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKML 365
++ + A LFDEM + N ++ +I L G EA + +M
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 366 QDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSY 425
+DG T+ V++ G A +L + K + T+ + L M
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD--TF--VSCALIDMYSKC 272
Query: 426 KAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSII 485
+ + V DG + +N ++ G+ G + AL ++ M G+ D FTF+ +I
Sbjct: 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332
Query: 486 DGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDL 545
+L E A +++ G D TAL D + K G+ +A +F+RM
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM------ 386
Query: 546 KTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSM 605
P +++++ L+ G G A+ M
Sbjct: 387 --PR-------------------------------KNLISWNALIAGYGNHGRGTKAVEM 413
Query: 606 IEVMKLAGCPPNVHTYTVIIN-----GLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILV 660
E M G PN T+ +++ GL ++G E+ + + P + Y+ ++
Sbjct: 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW----EIFQSMSENHRIKPRAMHYACMI 469
Query: 661 RAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALL 695
G LD A+ + + + N+++ALL
Sbjct: 470 ELLGREGLLDEAY---AMIRRAPFKPTVNMWAALL 501
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 4e-13
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 336 PNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCK 385
P+ TY LID C++GK++EA + +M + G P V TY++LI+G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 1e-11
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 476 PDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCK 525
PD T+ ++IDG CK GK E A F M K+GI P+ T + L DG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 7e-11
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 231 DTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLC 279
D +L+ G+C+ ++EA K+F+ M K+ +PN T++ LI GLC
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEM-KKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.4 bits (135), Expect = 3e-10
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 438 GLFPDEITYNILVDGFCREGQLDIALKIFNSMS 470
GL PD +TYN L+DG CR G++D A+++ + M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 6e-10
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 264 YRPNSVTFTTLIHGLCEVGRLDEAFSLKDEM 294
+P+ VT+ TLI GLC GR+DEA L DEM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 6e-09
Identities = 69/300 (23%), Positives = 117/300 (39%), Gaps = 32/300 (10%)
Query: 105 DVNSRIHLLNLVVSCNLYGVAHKAIIELIKECS--DSKDDILKLIVALDGLSKD----GF 158
DV ++H L Y V A+IE+ +C D ++ I D +S G
Sbjct: 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465
Query: 159 KLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEM 218
+LN C+ L+ F +++ +++ + ++A + G + G+
Sbjct: 466 RLNNRCFEALIF--------------FRQMLLT-LKPNSVTLIAALSACARIGALMCGKE 510
Query: 219 FFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGL 278
VL+ G D + +L+ + R + A+ F+ K+ V++ L+ G
Sbjct: 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDV------VSWNILLTGY 564
Query: 279 CEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVK-RCKPN 337
G+ A L + M E G P T+ L+ A + + L F M K PN
Sbjct: 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624
Query: 338 AHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLA 397
Y ++D L R GK+ EA KM P + L+N C+ R + EL A
Sbjct: 625 LKHYACVVDLLGRAGKLTEAYNFINKMPIT---PDPAVWGALLNA-CRIHRHVELGELAA 680
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.8 bits (123), Expect = 1e-08
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 367 DGHFPGVVTYNVLINGYCKQGRIIAAFELLALME 400
G P VVTYN LI+G C+ GR+ A ELL ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 3e-08
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 613 GCPPNVHTYTVIINGLCQRGRFKEAEMLLFKM 644
G P+V TY +I+GLC+ GR EA LL +M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 651 PNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGL 698
P+ +TY+ L+ + G+++ A K+ + M G + N YS L+ GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 5e-07
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 552 NSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGL 593
N+ +D CK+ K++E +F ++ K G+ P+V TY+IL+DGL
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 6e-07
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 269 VTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPST 303
VT+ TLI GLC+ GR++EA L EM E+G +P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 9e-07
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 332 KRCKPNAHTYTVLIDRLCREGKIDEANGMCGKM 364
K KP+ TY LID LCR G++DEA + +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 374 VTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNI 408
VTYN LI+G CK GR+ A EL M++R +P++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 2e-06
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 577 FGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMK 610
GL P VVTY L+DGL RAG + A+ +++ M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 5e-06
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 444 ITYNILVDGFCREGQLDIALKIFNSMSIFGLVPD 477
+TYN L+DG C+ G+++ AL++F M G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 9e-06
Identities = 87/424 (20%), Positives = 159/424 (37%), Gaps = 77/424 (18%)
Query: 416 EGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIA----LKIFNSMSI 471
G+ KS + + R++ G D I L++ + G LD+ K F +
Sbjct: 362 GGVSGKRKSPEYIDAYNRLLRDGRIKDCID---LLEDMEKRGLLDMDKIYHAKFFKACKK 418
Query: 472 FGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGE 531
V + F F +I +P +T L C + + +
Sbjct: 419 QRAVKEAFRFAKLIR-----------------------NPTLSTFNMLMS-VCASSQDID 454
Query: 532 ALMIFERMVQNTDLKTPHVLNSFLDVLC-KENKLKEEYAMFGKILKFGLVPSVVTYTILV 590
+ R+VQ LK L + L C K K+ + +F +++ G+ +V T+ L+
Sbjct: 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514
Query: 591 DGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLG-- 648
DG RAG +A A +M+ P+ + +I+ Q G A +L +M
Sbjct: 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574
Query: 649 VSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVL 708
+ P+HIT L++A A+ G++D A ++ + + VY
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY----------------- 617
Query: 709 SISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTD--FYNF 766
+I+ + S G D D+ S + +++ V D F++
Sbjct: 618 TIAVNSCSQKG-------DWDFALSIYDDMKKKGV----------------KPDEVFFSA 654
Query: 767 LVVELCRAGRIVEADRIMKDIMKSGVFP-AKAITSIIGCYCKERKYDDCLEFMNLILESG 825
LV AG + +A I++D K G+ + +S++G + + LE I
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714
Query: 826 FVPS 829
P+
Sbjct: 715 LRPT 718
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 9e-06
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 297 KGWQPSTRTYTVLIKALCDISLTDKALSLFDEMV 330
KG +P TY LI LC D+A+ L DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 479 FTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDE 513
T+ ++IDGLCK G+ E A F M ++GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 619 HTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPN 652
TY +I+GLC+ GR +EA L +M + G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 269 VTFTTLIHGLCEVGRLDEAFSLKDEMCEKG 298
VT+ +LI G C+ G+L+EA L EM EKG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-05
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 374 VTYNVLINGYCKQGRIIAAFELLALMEKR 402
VTYN LI+GYCK G++ A EL M+++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 304 RTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNA 338
TY LI LC ++AL LF EM + +P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 584 VTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNV 618
VTY L+DGL +AG + A+ + + MK G P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 9e-05
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 444 ITYNILVDGFCREGQLDIALKIFNSMSIFGL 474
+TYN L+ G+C+ G+L+ AL++F M G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 1e-04
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 507 KGISPDEATITALADGHCKNGKTGEALMIFERMV 540
KG+ PD T L DG C+ G+ EA+ + + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 1e-04
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 472 FGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMV 505
GL PD T+ ++IDGLC+ G+ + A M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 479 FTFTSIIDGLCKLGKPELANGFFGLMVKKGI 509
T+ S+I G CK GK E A F M +KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 648 GVSPNHITYSILVRAHASTGRLDHAFKIVSFMV 680
G+ P+ +TY+ L+ GR+D A +++ M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 620 TYTVIINGLCQRGRFKEAEMLLFKMFDLGV 649
TY +I+G C+ G+ +EA L +M + GV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 339 HTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGV 373
TY LID LC+ G+++EA + +M + G P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 305 TYTVLIKALCDISLTDKALSLFDEMVVKRC 334
TY LI C ++AL LF EM K
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 227 GFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMS 259
G D +L+ G CR + EA ++ D M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 373 VVTYNVLINGYCKQGRIIAAFELLALMEKRTCKP 406
+ TYN L+ K G A +L M+ KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.6 bits (93), Expect = 0.002
Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 4/220 (1%)
Query: 391 AAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEI-TYNIL 449
A L +E L L ++ + +A+ LL++ ++ L P+ L
Sbjct: 42 ALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNL 101
Query: 450 VDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGI 509
G+ + AL++ PD + L +LG E A + ++
Sbjct: 102 GLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDP 161
Query: 510 SPDE--ATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEE 567
+E + AL G+ EAL + E+ ++ L + + K K +E
Sbjct: 162 ELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEA 221
Query: 568 YAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIE 607
+ K L+ + L L G A+ +E
Sbjct: 222 LEYYEKALEL-DPDNAEALYNLALLLLELGRYEEALEALE 260
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 654 ITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNS 688
+TY+ L+ GR++ A ++ M G + +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 340 TYTVLIDRLCREGKIDEANGMCGKMLQDG 368
TY LI C+ GK++EA + +M + G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 902 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.86 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.85 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.72 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.71 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.67 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.67 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.64 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.61 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.58 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.55 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.53 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.5 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.48 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.47 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.46 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.45 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.44 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.43 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.43 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.41 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.38 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.35 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.35 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.33 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.32 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.32 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.29 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.29 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.26 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.25 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.25 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.23 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.22 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.21 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.2 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.2 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.19 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.15 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.11 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.05 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.04 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.01 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.98 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.98 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.9 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.9 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.83 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.8 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.79 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.79 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.78 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.78 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.77 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.77 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.75 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.75 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.73 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.73 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.7 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.68 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.64 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.64 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.63 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.59 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.58 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.57 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.55 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.53 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.48 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.46 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.44 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.43 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.43 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.37 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.33 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.32 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.29 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.27 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.26 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.18 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.18 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.16 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.12 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.07 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.03 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.0 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.0 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.97 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.95 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.95 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.93 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.88 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.85 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.84 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.82 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.8 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.8 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.79 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.79 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.76 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.75 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.75 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.75 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.72 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.71 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.7 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.68 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.67 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.67 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.66 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.63 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.62 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.62 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.61 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.59 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.58 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.57 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.55 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.54 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.52 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.51 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.48 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.45 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.44 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.41 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.4 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.39 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.38 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.36 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.32 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.31 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.29 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.27 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.21 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.15 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.13 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.12 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.12 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.08 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.06 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.05 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.97 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.93 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.91 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.88 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.88 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.85 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.84 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.83 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.76 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.75 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.73 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.67 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.65 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.61 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.61 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.6 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.6 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.5 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.48 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.42 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.41 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.4 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.38 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.37 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.37 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.34 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.34 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.31 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.3 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.3 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.29 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.27 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.23 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.21 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.17 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.17 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.13 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.03 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.0 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.95 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.89 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.83 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.77 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.76 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.72 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.66 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.41 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.31 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.28 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.25 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.23 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.21 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.18 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.17 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.15 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.05 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.04 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 95.04 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.99 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.95 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.93 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.81 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.64 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 94.55 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.49 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.26 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.2 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.15 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.13 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.13 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.13 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.05 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.99 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.98 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.63 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.62 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.62 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.39 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.33 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.13 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.84 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.75 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.72 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.63 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.56 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.43 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.42 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.28 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.18 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.51 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.5 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 90.94 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 90.84 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.59 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.53 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.23 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.95 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.65 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.59 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.4 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.3 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.26 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 89.24 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.2 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.82 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.64 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.56 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.73 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 87.68 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.53 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.17 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.89 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.44 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 86.15 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.96 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 85.85 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.73 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 85.71 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 85.43 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 84.65 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 84.43 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 84.32 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.0 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.86 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.53 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.52 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.07 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 82.07 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 81.83 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 81.56 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.42 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.1 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.04 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.84 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 80.61 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 80.01 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-85 Score=779.31 Aligned_cols=676 Identities=17% Similarity=0.231 Sum_probs=651.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 048778 160 LNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLV 239 (902)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 239 (902)
|+..++|.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++.+|.+.+.+..|.+++..+.+.|..++..++|+|+
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCh
Q 048778 240 LGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLT 319 (902)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 319 (902)
.+|++.|+++.|+++|++|.+ ||+.+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.+++
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 999999999999999999985 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 048778 320 DKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALM 399 (902)
Q Consensus 320 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (902)
+.+.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.. ||.++||++|.+|++.|++++|+++|++|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999975 69999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048778 400 EKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGF 479 (902)
Q Consensus 400 ~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 479 (902)
.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++|. .||..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 47899
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 048778 480 TFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLC 559 (902)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 559 (902)
+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|..++..+|++|+++|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 560 KENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEM 639 (902)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 639 (902)
+.|++++|.++|++|.+ +|..+|+++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 99999999999999964 7889999999999999999999999999986 589999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCC
Q 048778 640 LLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAG 719 (902)
Q Consensus 640 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (902)
++..+.+.|+.+|..++++|+++|++.|++++|.++|+.+ .||..+|++++.+|++.|
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G----------------- 568 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHG----------------- 568 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcC-----------------
Confidence 9999999999999999999999999999999999999887 689999999999999999
Q ss_pred CCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCchHh
Q 048778 720 SSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG-GSTTDFYNFLVVELCRAGRIVEADRIMKDIM-KSGVFPAKA 797 (902)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~ 797 (902)
+.++|.++|++|.+.+ .||..+|+.++.+|.+.|++++|.++|+.|. +.|+.|+..
T Consensus 569 ----------------------~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~ 626 (857)
T PLN03077 569 ----------------------KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626 (857)
T ss_pred ----------------------CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence 9999999999999998 9999999999999999999999999999999 678999988
Q ss_pred H-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHh
Q 048778 798 I-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLL 876 (902)
Q Consensus 798 ~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (902)
+ ..++++|++.|++++|.+++++|. +.||..+|..++.++...|+.+.+....+++++..+. +...|..+...|.
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya 702 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYA 702 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHH
Confidence 8 999999999999999999999983 6899999999999999999999999999998776533 3445666677899
Q ss_pred cCCcHhHHHHHHHHHHhcCcccCCC
Q 048778 877 TGDELGKSIDLLNLIDQVHYRQRPV 901 (902)
Q Consensus 877 ~~g~~~~a~~~l~~~~~~~~~~~~~ 901 (902)
..|+|++|.++++.|.++|++|+|+
T Consensus 703 ~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 703 DAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred HCCChHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999999999999996
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-85 Score=778.81 Aligned_cols=744 Identities=18% Similarity=0.221 Sum_probs=660.5
Q ss_pred HHHHHhcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHH---------------HhccCCh
Q 048778 76 SQVILLHGENTELGVRFFKWVCKQSTYCYDVNSRIHLLNLVVSCNLYGVAHKAIIELI---------------KECSDSK 140 (902)
Q Consensus 76 ~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~---------------~~~~~~~ 140 (902)
...+...+. +..|+.+|..+.. .++.|+..+|..++..+.+.+.+..+..++..++ ..+++.+
T Consensus 58 i~~l~~~g~-~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g 135 (857)
T PLN03077 58 LRALCSHGQ-LEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG 135 (857)
T ss_pred HHHHHhCCC-HHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCC
Confidence 333434555 9999999999855 5778999999999999999988888887776544 3334455
Q ss_pred hhHHHHHHHHHhhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 048778 141 DDILKLIVALDGLSKDGFKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFF 220 (902)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 220 (902)
+ +..|.++|++|++ ||+.+||++|.+|++.|++++|+.+|++|...|+.||.+||++++++|++.+++..+.+++
T Consensus 136 ~-~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~ 210 (857)
T PLN03077 136 E-LVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210 (857)
T ss_pred C-hHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence 5 7789999999986 5889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048778 221 CRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQ 300 (902)
Q Consensus 221 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 300 (902)
..|.+.|+.||++++|+||.+|+++|++++|.++|++|.. ||.++||++|.+|++.|++++|+++|++|.+.|+.
T Consensus 211 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999985 89999999999999999999999999999999999
Q ss_pred cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 301 PSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLI 380 (902)
Q Consensus 301 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 380 (902)
||..||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.. ||.++||++|
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li 361 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMI 361 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999974 7999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 048778 381 NGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLD 460 (902)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 460 (902)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+++|++.|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 461 IALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMV 540 (902)
Q Consensus 461 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 540 (902)
+|.++|++|.+ +|..+|+++|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|..+.+.+++..+.
T Consensus 442 ~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 442 KALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred HHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 99999999974 6889999999999999999999999999986 589999999999999999999999999999999
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 048778 541 QNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHT 620 (902)
Q Consensus 541 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 620 (902)
+.|..++..++|+++++|++.|++++|..+|+.+ .||..+||++|.+|++.|+.++|+++|++|.+.|+.||..|
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 9999999999999999999999999999999987 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 621 YTVIINGLCQRGRFKEAEMLLFKMF-DLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLV 699 (902)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 699 (902)
|+.++.+|++.|++++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++| ++.||..+|++|+.+|.
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACR 668 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999 7899999999999999999999999999999998 48999999999999999
Q ss_pred hcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 700 SSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVE 779 (902)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 779 (902)
..+ +.+.|....+++.+..|.+...|..|++.|...|+|++
T Consensus 669 ~~~---------------------------------------~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 669 IHR---------------------------------------HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HcC---------------------------------------ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCchHhH-H----HHHHHHHccC--------ChHHHHHHHHHHHHcCCCCCHHHHHHHH------HHH
Q 048778 780 ADRIMKDIMKSGVFPAKAI-T----SIIGCYCKER--------KYDDCLEFMNLILESGFVPSFESHCTVI------QGL 840 (902)
Q Consensus 780 A~~~~~~~~~~~~~p~~~~-~----~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~l~------~~l 840 (902)
|.++.+.|.+.|++++... . ..+..+.... -++.-..+..+|.+.|+.||........ ...
T Consensus 710 a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~ 789 (857)
T PLN03077 710 VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFC 789 (857)
T ss_pred HHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHH
Confidence 9999999999999887754 1 1111111100 1233445677888899999853211000 000
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 841 QSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 841 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
....++.-|..++. .+|.... .....+.-.|+-..+.++..++..+.
T Consensus 790 ~hse~la~a~~l~~------~~~~~~i--~i~knlr~c~dch~~~k~~s~~~~r~ 836 (857)
T PLN03077 790 GHSERLAIAFGLIN------TVPGMPI--WVTKNLYMCENCHNTVKFISKIVRRE 836 (857)
T ss_pred hccHHHHHHHhhhc------CCCCCeE--EEeCCCEeCccHHHHHHHHHHHhCeE
Confidence 01111111111111 1222211 12334555788889999888877664
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-71 Score=640.55 Aligned_cols=523 Identities=17% Similarity=0.200 Sum_probs=411.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 048778 160 LNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGF-VLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSL 238 (902)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 238 (902)
++...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++.+|++.|.+++|..+|..|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4556677777777777777777777777777774 45666677777777777777777777777753 777777777
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC
Q 048778 239 VLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISL 318 (902)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 318 (902)
+.+|++.|+++.|.++|+.|.+. |+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 77777777777777777777776 77777777777777777777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 048778 319 TDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQ--DGHFPGVVTYNVLINGYCKQGRIIAAFELL 396 (902)
Q Consensus 319 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 396 (902)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777777777777777777777777777777777777777777765 566777777777777777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048778 397 ALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVP 476 (902)
Q Consensus 397 ~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~ 476 (902)
++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048778 477 DGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLD 556 (902)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 556 (902)
|..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHHHCC
Q 048778 557 VLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFR-----------------------AGNIALAMSMIEVMKLAG 613 (902)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-----------------------~g~~~~A~~~~~~m~~~~ 613 (902)
+|++.|++++|.++|.+|.+.|+.||..+|++++..|.+ .+..+.|..+|++|.+.|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 777777777777777777777777777777777754321 123467999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048778 614 CPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSN 689 (902)
Q Consensus 614 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 689 (902)
+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++++++++. .++|..++++|.+.|+.|+..
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999998889999999999999999888899999999999998542 468999999999999999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-70 Score=634.82 Aligned_cols=549 Identities=21% Similarity=0.305 Sum_probs=501.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhh
Q 048778 192 GFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGF-CLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVT 270 (902)
Q Consensus 192 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 270 (902)
...++...|..++..|++.|++++|.++|++|.+.|+ .++..+++.++..|++.|.+++|..+|+.|.. ||..+
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~T 439 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLST 439 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHH
Confidence 3456777899999999999999999999999999986 56788888999999999999999999999974 99999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048778 271 FTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCR 350 (902)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 350 (902)
|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 351 EGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEK--RTCKPNIRTYNELMEGLCRMNKSYKAV 428 (902)
Q Consensus 351 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~t~~~li~~~~~~g~~~~A~ 428 (902)
.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999976 678999999999999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048778 429 HLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKG 508 (902)
Q Consensus 429 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 508 (902)
++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 509 ISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTI 588 (902)
Q Consensus 509 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 588 (902)
+.||..+|+++|.+|++.|++++|.++|++|.+.|..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 589 LVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGR 668 (902)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 668 (902)
++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|. +++++|..+.+.+.... + .......+.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w 827 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKW 827 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccch
Confidence 99999999999999999999999999999999999986554 25667766655544321 0 111112234
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHH
Q 048778 669 LDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFR 748 (902)
Q Consensus 669 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 748 (902)
.++|..+|++|++.|+.||..+|+.++.++++.+ ..+.+..
T Consensus 828 ~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~---------------------------------------~~~~~~~ 868 (1060)
T PLN03218 828 TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPH---------------------------------------DATLRNR 868 (1060)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccc---------------------------------------cHHHHHH
Confidence 5679999999999999999999999998887777 8889999
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH
Q 048778 749 LRDRIESCG-GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 749 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
+++.+...+ +++..+|+.|+.++++. .++|..++++|.+.|+.|+...
T Consensus 869 m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~ 917 (1060)
T PLN03218 869 LIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSF 917 (1060)
T ss_pred HHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCccc
Confidence 999888776 88999999999998543 4789999999999999998864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-65 Score=593.16 Aligned_cols=513 Identities=22% Similarity=0.297 Sum_probs=475.3
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 048778 160 LNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADG-FVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSL 238 (902)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 238 (902)
.+..+|+.+|.+|++.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||+.+||.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 466799999999999999999999999999864 7899999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC
Q 048778 239 VLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISL 318 (902)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 318 (902)
+.+|++.|++++|.++|++|.+ ||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999985 89999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 048778 319 TDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLAL 398 (902)
Q Consensus 319 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 398 (902)
.+.+.+++..+.+.|+.||..+|++||++|+++|++++|.++|++|.. +|+++||++|.+|++.|++++|+++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999975 6999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048778 399 MEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDG 478 (902)
Q Consensus 399 m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 478 (902)
|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|. .||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 4799
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCChhhHHHHHHH
Q 048778 479 FTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQ-NTDLKTPHVLNSFLDV 557 (902)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~ 557 (902)
.+|++||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 5899999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 558 LCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEA 637 (902)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 637 (902)
|++.|++++|.+++++| +..|+..+|++++.+|...|+++.|..+++++.+.+ +.+..+|..|+++|++.|++++|
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHH
Confidence 99999999999998876 578999999999999999999999999999997653 33567999999999999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHH-------HH---HH-hcCCHHHHHHHHHHHHHCCCCCCHH
Q 048778 638 EMLLFKMFDLGVSPNH-ITYSILV-------RA---HA-STGRLDHAFKIVSFMVANGCQLNSN 689 (902)
Q Consensus 638 ~~~~~~m~~~g~~p~~-~~~~~l~-------~~---~~-~~g~~~~A~~~~~~m~~~g~~~~~~ 689 (902)
.++++.|.+.|+.... .+|..+. .. +- ...-++...++..+|.+.|+.||..
T Consensus 548 ~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 548 AKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999976432 2221110 00 00 0112345567788888889988753
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-64 Score=584.50 Aligned_cols=513 Identities=18% Similarity=0.262 Sum_probs=468.8
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 265 RPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKG-WQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTV 343 (902)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 343 (902)
.++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3566788888888888888888888888888764 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048778 344 LIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNK 423 (902)
Q Consensus 344 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~ 423 (902)
++.+|++.|++++|.++|++|.+ ||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999964 79999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 048778 424 SYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGL 503 (902)
Q Consensus 424 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (902)
.+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++|. .+|..+|+++|.+|++.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 46899999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048778 504 MVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSV 583 (902)
Q Consensus 504 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 583 (902)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|..|+..+|++++++|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999964 799
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 048778 584 VTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFD-LGVSPNHITYSILVRA 662 (902)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~ 662 (902)
.+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999985 6999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhcc
Q 048778 663 HASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMD 742 (902)
Q Consensus 663 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (902)
|++.|++++|.+++++| ++.|+..+|++|+.+|+..| +
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g---------------------------------------~ 509 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHK---------------------------------------N 509 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcC---------------------------------------C
Confidence 99999999999999876 68999999999999999999 9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHH---HHHH--------HccC
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSI---IGCY--------CKER 809 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l---~~~~--------~~~g 809 (902)
++.|..+++++.+.+|.+..+|..|++.|++.|++++|.++++.|.+.|+.+.+.. ..+ ...+ ....
T Consensus 510 ~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~ 589 (697)
T PLN03081 510 LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589 (697)
T ss_pred cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHH
Confidence 99999999999999899999999999999999999999999999999998654432 000 0000 0112
Q ss_pred ChHHHHHHHHHHHHcCCCCCHH
Q 048778 810 KYDDCLEFMNLILESGFVPSFE 831 (902)
Q Consensus 810 ~~~~A~~~~~~~~~~~~~p~~~ 831 (902)
-++...++..+|.+.|+.|+..
T Consensus 590 i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 590 IYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHHHHHHcCCCCCcc
Confidence 2456677888888999999864
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=421.71 Aligned_cols=783 Identities=13% Similarity=0.038 Sum_probs=547.3
Q ss_pred HHhcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHHHhccC--------------ChhhHH
Q 048778 79 ILLHGENTELGVRFFKWVCKQSTYCYDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSD--------------SKDDIL 144 (902)
Q Consensus 79 ~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~ 144 (902)
+...++ ++.|+..|.-... .........+..+...+...|.+.+|...+..++...+. .++ +.
T Consensus 100 ~~~~g~-~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~ 176 (899)
T TIGR02917 100 YLLQGK-FQQVLDELPGKTL-LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENR-FD 176 (899)
T ss_pred HHHCCC-HHHHHHhhccccc-CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCC-HH
Confidence 333444 6666666653321 122334455555556666667777776666665543322 112 45
Q ss_pred HHHHHHHhhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048778 145 KLIVALDGLSKDGFKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVL 224 (902)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 224 (902)
+|...++.+.+.+ +.+...|..+...+...|++++|...|++..+.. +.+..++..++..+...|++++|...++.+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 254 (899)
T TIGR02917 177 EARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALL 254 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666665543 3355677777777777788888888887777654 3455667777777777778888877777777
Q ss_pred hCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHh
Q 048778 225 KHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTR 304 (902)
Q Consensus 225 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 304 (902)
+... .+...+......+.+.|++++|...|+.+.+. .+.+...+..+...+...|++++|...++.+.+.. +.+..
T Consensus 255 ~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 330 (899)
T TIGR02917 255 KKAP-NSPLAHYLKALVDFQKKNYEDARETLQDALKS--APEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQ 330 (899)
T ss_pred HhCC-CCchHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 6542 23333334444556677777777777777653 12223344455556667777777777777776653 22455
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 305 TYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYC 384 (902)
Q Consensus 305 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 384 (902)
.+..+...+.+.|++++|...++.+.... +.+...+..+...+.+.|++++|.++|+++.+... .+...+..+...+.
T Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 408 (899)
T TIGR02917 331 ARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKL 408 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 56666677777777777777777776653 23566777777777777777777777777766532 25556666777777
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048778 385 KQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALK 464 (902)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 464 (902)
..|++++|.+.++.+.+.... +......++..+.+.|++++|..+++.+.... +.+..++..+...+...|++++|.+
T Consensus 409 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred hCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777777777665322 23344556667777777777777777776642 3456667777777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 465 IFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTD 544 (902)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 544 (902)
.|+++.+.. +.+...+..+...+...|++++|...++.+...+ +.+..++..+...+.+.|+.++|..+++++.+.+
T Consensus 487 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 563 (899)
T TIGR02917 487 AFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN- 563 (899)
T ss_pred HHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 777776653 3455666667777777777777777777777654 3356677777777777777777777777776653
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 545 LKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVI 624 (902)
Q Consensus 545 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 624 (902)
+.+...+..++..+...|++++|..+++.+.+. .+.+...|..+..+|...|++++|...|+++.+.. +.+...+..+
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 641 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLL 641 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 244556666777777777777777777777653 24456677777777777777777777777777653 4455667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 048778 625 INGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKA 704 (902)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 704 (902)
..++...|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.+.. +++...+..+...+...|+.
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCH
Confidence 777777777777777777777653 4456777777777777777777777777777642 44556666677777777766
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIM 784 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 784 (902)
+++...+..... ..++...+...+..+.+.|+.++|.+.++++++..|.+..++..++..|...|++++|++.|
T Consensus 720 ~~A~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 720 PAAIQAYRKALK------RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred HHHHHHHHHHHh------hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 665555543322 11223455566667777779999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 785 KDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 785 ~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
+++.+.. |+... ..+++.+...|+ .+|+.+++++.+. .| +...+..++.++...|++++|..+++++++.++
T Consensus 794 ~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 794 RTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999854 54444 899999999999 8899999999875 44 457778899999999999999999999998876
Q ss_pred CCcchhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 862 IEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 862 ~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
. +..++..++..+.+.|++++|++++++|.+
T Consensus 869 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 869 E-AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 5 777888999999999999999999999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=416.35 Aligned_cols=822 Identities=12% Similarity=0.059 Sum_probs=663.0
Q ss_pred HHHHHHHHHhcCCCCCccc-hhhhhcCCCChH------HHHHHHHhcCCChHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 048778 43 DTACQVSALLHKPNWQQND-ILKSLVSHMPPH------AASQVILLHGENTELGVRFFKWVCKQSTYCYDVNSRIHLLNL 115 (902)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~ 115 (902)
.+...-...+.++++.... .+.... ...|. .+..+....++ .+.|+..|+-+.... +++......+..+
T Consensus 24 ~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~--~~~~~~~~~~a~~ 99 (899)
T TIGR02917 24 SLIEAAKSYLQKNKYKAAIIQLKNAL-QKDPNDAEARFLLGKIYLALGD-YAAAEKELRKALSLG--YPKNQVLPLLARA 99 (899)
T ss_pred HHHHHHHHHHHcCChHhHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC--CChhhhHHHHHHH
Confidence 3455555556666665432 222221 12222 13334444555 999999998886542 2344556667778
Q ss_pred HHhCCCchhHHHHHHHHH---------------HhccCChhhHHHHHHHHHhhhhCCCCCCHhhHHHHHHHHHhcCChhH
Q 048778 116 VVSCNLYGVAHKAIIELI---------------KECSDSKDDILKLIVALDGLSKDGFKLNYPCYSCLLMSLAKLDLGFV 180 (902)
Q Consensus 116 l~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 180 (902)
+...|.+..|..++.... ......++ ..+|...|+.+.+.+.. +..++..+...+...|++++
T Consensus 100 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~ 177 (899)
T TIGR02917 100 YLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQ-LELAQKSYEQALAIDPR-SLYAKLGLAQLALAENRFDE 177 (899)
T ss_pred HHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHCCCHHH
Confidence 888888887776654322 11112233 67899999988775543 56788889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 048778 181 AYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSK 260 (902)
Q Consensus 181 a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (902)
|..+++++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+..++..++..+...|++++|...++.+.+
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 255 (899)
T TIGR02917 178 ARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLK 255 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 5677788888899999999999999999998875 45677888899999999999999999999987
Q ss_pred cCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 048778 261 EASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHT 340 (902)
Q Consensus 261 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 340 (902)
. .+.+...+......+...|++++|...|+++.+.+.. +...+..+...+...|++++|...++.+.+... .+...
T Consensus 256 ~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~ 331 (899)
T TIGR02917 256 K--APNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQA 331 (899)
T ss_pred h--CCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence 4 3334444445555667889999999999999886432 233444556677889999999999999987643 36677
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048778 341 YTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCR 420 (902)
Q Consensus 341 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 420 (902)
+..+...+.+.|++++|...++.+..... .+...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+..
T Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 332 RRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLS 409 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 88889999999999999999999987643 467889999999999999999999999998764 3356778888889999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 048778 421 MNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGF 500 (902)
Q Consensus 421 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 500 (902)
.|+.++|...++.+.+... ........++..+.+.|++++|.++++++.... +.+..++..+...+...|++++|...
T Consensus 410 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 487 (899)
T TIGR02917 410 QGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREA 487 (899)
T ss_pred CCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999987653 234455667888999999999999999998753 56788999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048778 501 FGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLV 580 (902)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 580 (902)
|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+.+.|+.++|...++++.+.+ +
T Consensus 488 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 564 (899)
T TIGR02917 488 FEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-P 564 (899)
T ss_pred HHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 99998864 3466778888999999999999999999998864 3567788999999999999999999999998754 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 581 PSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILV 660 (902)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 660 (902)
.+...+..++..|.+.|++++|..+++.+.+.. +.+..+|..+..++...|++++|+..++++.+.. +.+...+..++
T Consensus 565 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 642 (899)
T TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLA 642 (899)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 467788889999999999999999999998764 6678899999999999999999999999999764 55778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 661 RAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 661 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
.++.+.|++++|...++++.+. .+.+...+..+...+...|+.+++...+...... .+.+...+...+..+...
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 716 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ-----HPKAALGFELEGDLYLRQ 716 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcCChHHHHHHHHHHHHC
Confidence 9999999999999999999874 2446788899999999999777776665544321 233456677788889999
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHH
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~ 818 (902)
|++++|.+.|+++.+..|.+ ..+..++..+.+.|++++|.+.++++++.. |+... ..++..|...|++++|...+
T Consensus 717 g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 717 KDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999999999999988666 677889999999999999999999999854 54444 88999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcCcc
Q 048778 819 NLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVHYR 897 (902)
Q Consensus 819 ~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~~ 897 (902)
+++.+.. .++...+..++..+...|+ ++|+.+++++++.... +...+..++..+...|++++|++.++++.+.+..
T Consensus 794 ~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 794 RTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999863 4467889999999999999 8899999999877543 4556778889999999999999999999998754
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-28 Score=294.17 Aligned_cols=661 Identities=11% Similarity=0.032 Sum_probs=429.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHH----------
Q 048778 166 SCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHIC---------- 235 (902)
Q Consensus 166 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---------- 235 (902)
-..++.....++.+.|.+.+.++.... +.|+..+..++..+.+.|+.++|.+.++++.+.. +.+....
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcC
Confidence 345556677888888888888887654 3466777778888888888888888888888775 2222221
Q ss_pred ------HHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHH
Q 048778 236 ------TSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTL-IHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTV 308 (902)
Q Consensus 236 ------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 308 (902)
..+...+.+.|++++|.+.|+...+ +.+|+...-... .......|+.++|++.++++.+.... +...+..
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~--~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~ 186 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFN--GAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNT 186 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHcc--CCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 2223356666777777777777665 333433211111 11112346677777777776665321 3444555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 048778 309 LIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPG-VVTYNVLINGYCKQG 387 (902)
Q Consensus 309 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g 387 (902)
+...+...|+.++|++.++++..... . +...+...++.+...+..++ ...+...+..+-...
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~--~---------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~ 249 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPA--G---------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGD 249 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCC--c---------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCch
Confidence 66666666777777777776654311 0 00111111111111111111 111222222222223
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 048778 388 RIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFN 467 (902)
Q Consensus 388 ~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 467 (902)
..+.|...+..+......|+... ......+...|++++|...|++.++... .+...+..+...+.+.|++++|...|+
T Consensus 250 ~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 250 SVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455566655544322333222 2334556677888888888888877532 366777778888888888888888888
Q ss_pred HHHhCCCCC-CHHHH------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 468 SMSIFGLVP-DGFTF------------TSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALM 534 (902)
Q Consensus 468 ~m~~~g~~~-~~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 534 (902)
+..+..... ....| ......+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~ 406 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAER 406 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 877653211 11111 122345678888999999998888874 3356677778888888899999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048778 535 IFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGL--------VPSVVTYTILVDGLFRAGNIALAMSMI 606 (902)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~p~~~~~~~li~~~~~~g~~~~A~~~~ 606 (902)
.|+++.+... .+...+..+...+. .++.++|..+++.+..... ......+..+...+...|++++|++.|
T Consensus 407 ~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 407 YYQQALRMDP-GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 9988887532 34455666666664 4577888888766432110 001224556677888999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048778 607 EVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL 686 (902)
Q Consensus 607 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 686 (902)
++.++.. +-+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|+.++|...++.+......+
T Consensus 485 ~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~ 562 (1157)
T PRK11447 485 RQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNS 562 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcCh
Confidence 9998864 4456677888899999999999999999998753 4456666666666778899999999988765332222
Q ss_pred CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHH
Q 048778 687 NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNF 766 (902)
Q Consensus 687 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 766 (902)
+......-+. ...+...+..+...|+.++|.++++ ..|.++..+..
T Consensus 563 ~~~~l~~~l~------------------------------~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~ 608 (1157)
T PRK11447 563 NIQELAQRLQ------------------------------SDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLT 608 (1157)
T ss_pred hHHHHHHHHh------------------------------hhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHH
Confidence 2211100000 0001112223334459999998877 45888888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc
Q 048778 767 LVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSE 843 (902)
Q Consensus 767 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~ 843 (902)
++..+.+.|++++|++.|+++++ ..|+... ..++.+|...|++++|.+.++.+.+. .| +...+..++.++...
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~ 684 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAAL 684 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhC
Confidence 99999999999999999999998 4566555 88999999999999999999988764 44 346677788899999
Q ss_pred CCHHHHHHHHHHHHhCCCCC-----cchhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 844 GRNKQAKNLVSDLFRYNGIE-----EKAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 844 g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
|++++|.++++++++..... +...+..+...+...|++++|++.++....
T Consensus 685 g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 685 GDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999987654322 123555667888899999999999998864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-27 Score=291.45 Aligned_cols=641 Identities=12% Similarity=0.023 Sum_probs=446.7
Q ss_pred HHHHHHHHHhhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----------------HHHHHH
Q 048778 143 ILKLIVALDGLSKDGFKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDY----------------RSVINA 206 (902)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~----------------~~ll~~ 206 (902)
.+.|.+.+.++...... +...+..++..+.+.|+.++|...+++..+.. +.+.... ......
T Consensus 44 ~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~l 121 (1157)
T PRK11447 44 EDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARL 121 (1157)
T ss_pred hHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 45688888888776543 67788889999999999999999999999876 2232221 223346
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHH-HHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChh
Q 048778 207 LCKSGLVRAGEMFFCRVLKHGFCLDTHI-CTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLD 285 (902)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 285 (902)
+.+.|++++|.+.|+.+.+.+ +++... ...+.......|+.++|++.|+++.+ ..+.+...+..+...+...|+.+
T Consensus 122 l~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~--~~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNA--DYPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHccCCHH
Confidence 788999999999999999764 333321 11122223346999999999999998 44556778889999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 048778 286 EAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPN-AHTYTVLIDRLCREGKIDEANGMCGKM 364 (902)
Q Consensus 286 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 364 (902)
+|++.++++..... . +...+...++.+...+..+. ...+...+..+-.....+.|...+.+.
T Consensus 199 eAl~~l~~~~~~~~--~---------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~ 261 (1157)
T PRK11447 199 EGFAVLEQMAKSPA--G---------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQ 261 (1157)
T ss_pred HHHHHHHHHhhCCC--c---------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 99999999876421 1 01111112222222221111 122222222222223344555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-h
Q 048778 365 LQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPD-E 443 (902)
Q Consensus 365 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~ 443 (902)
......|+... ......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|++..+...... .
T Consensus 262 ~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 262 QKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 44322233221 223455566777777777777776653 22566677777777777777777777777766432211 1
Q ss_pred hhH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 048778 444 ITY------------NILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISP 511 (902)
Q Consensus 444 ~~~------------~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 511 (902)
..+ ......+.+.|++++|...|+++.... +.+...+..+...+...|++++|.+.|+++.+.. +.
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~ 417 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PG 417 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 111 122345667888888888888887764 3456677778888888888888888888888763 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048778 512 DEATITALADGHCKNGKTGEALMIFERMVQNTD--------LKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSV 583 (902)
Q Consensus 512 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 583 (902)
+...+..+...|. .++.++|..+++.+..... ......+..+...+...|++++|...|++.++.. +-+.
T Consensus 418 ~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~ 495 (1157)
T PRK11447 418 NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSV 495 (1157)
T ss_pred CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 4556666666664 4567888877765433210 0112235556777888999999999999988753 2256
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------H
Q 048778 584 VTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNH---------I 654 (902)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------~ 654 (902)
..+..+...|.+.|++++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++. .
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~ 574 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSD 574 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhh
Confidence 677788889999999999999999988753 445555555566677889999999988876533222222 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhh
Q 048778 655 TYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSS 734 (902)
Q Consensus 655 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (902)
.+..+...+...|++++|..+++. .+.+...+..+...+.+.|
T Consensus 575 ~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g-------------------------------- 617 (1157)
T PRK11447 575 QVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRG-------------------------------- 617 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcC--------------------------------
Confidence 233556778899999999999872 3456667777888888888
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
+.++|+..|+++++..|.++.++..++..|...|++++|++.++++.+ ..|+... ..++.++...|+++
T Consensus 618 -------~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 618 -------DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred -------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999999999987 4455544 77899999999999
Q ss_pred HHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 813 DCLEFMNLILESGF--VP---SFESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 813 ~A~~~~~~~~~~~~--~p---~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
+|.++++++.+... .| +...+..++.++...|+.++|+..|++++.
T Consensus 689 eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 689 AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999986421 12 124566778899999999999999999864
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-24 Score=250.80 Aligned_cols=607 Identities=11% Similarity=0.014 Sum_probs=346.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHH
Q 048778 174 KLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFK 253 (902)
Q Consensus 174 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 253 (902)
..|++++|+..|+...+.. +-+..++..+...|.+.|+.++|+...++.++.. +-|...+..+ ..+ ++.++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHH
Confidence 3477778888888777665 2335667777777778888888888877777663 2233333333 222 77777778
Q ss_pred HHHHhhhcCCCCCCHhhHHHHHHH--------HHhcCChhHHHHHHHHHHHCCCCcCHhhHHHH-HHHHHhcCChHHHHH
Q 048778 254 VFDVMSKEASYRPNSVTFTTLIHG--------LCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVL-IKALCDISLTDKALS 324 (902)
Q Consensus 254 ~~~~m~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~ 324 (902)
+++++... .+-+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|++
T Consensus 130 ~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 130 TVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 88777763 33334444444443 4444 44444444 3333334445444444 677777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 048778 325 LFDEMVVKRCKPNAHTYTVLIDRLCR-EGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRT 403 (902)
Q Consensus 325 ~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 403 (902)
.++++.+.+.. +..-...|...|.. .++ +++..++... +.-+...+..+...|.+.|+.++|.++++++...-
T Consensus 204 lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 88887777533 44445566666666 355 6666665432 22467777777777788888888877777765432
Q ss_pred CC-CCHHHHHH------------------------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 048778 404 CK-PNIRTYNE------------------------------LMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDG 452 (902)
Q Consensus 404 ~~-p~~~t~~~------------------------------li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 452 (902)
.. |...++.- ++..+.+.+.++.+.++.. +.|.... ..++.
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~r~ 349 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM--LEERY 349 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--HHHHH
Confidence 21 33333322 2334444455554433311 2222221 12221
Q ss_pred H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCC
Q 048778 453 F--CREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKK-G-ISPDEATITALADGHCKNGK 528 (902)
Q Consensus 453 ~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~ 528 (902)
. ...+...++.+.+..|-+.. +-+......+.-...+.|+.++|..++...... + -.++......++..|.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 1 12355555555565555432 224444444444556677777777777766552 1 12233344466666666554
Q ss_pred ---HHHHHHH----------------------HHHHHhC-C-CCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048778 529 ---TGEALMI----------------------FERMVQN-T-DLK--TPHVLNSFLDVLCKENKLKEEYAMFGKILKFGL 579 (902)
Q Consensus 529 ---~~~A~~~----------------------~~~~~~~-~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (902)
..++..+ ++..... + .++ +...+..+..++.. ++.++|...+.+....
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-- 505 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-- 505 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--
Confidence 2222222 1111110 0 112 44455555555554 5666677666665543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 580 VPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSIL 659 (902)
Q Consensus 580 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 659 (902)
.|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~L 582 (987)
T PRK09782 506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWL 582 (987)
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHH
Confidence 244433333344445667777777777766543 3444445555666666777777777777766543 2233333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhh
Q 048778 660 VRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLR 739 (902)
Q Consensus 660 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (902)
.....+.|++++|...+++.++ ..|+...+..+...+.+.|
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG------------------------------------- 623 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRH------------------------------------- 623 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCC-------------------------------------
Confidence 3344455777777777777765 3455666666666666666
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHH
Q 048778 740 EMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEF 817 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~ 817 (902)
+.++|...++++++.+|.++..++.++..+...|++++|++.++++++ ..|+... ..++.++...|++++|...
T Consensus 624 --~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 624 --NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777777777777777777777777777777777777777777766 3454444 6777777777777777777
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 818 MNLILESGFVPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 818 ~~~~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
++++++. .|+. .+....+..+.+..+++.|.+-+++...
T Consensus 700 l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 700 ARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 7777653 4544 4445555666666666666666666533
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-22 Score=235.13 Aligned_cols=608 Identities=10% Similarity=-0.013 Sum_probs=431.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 048778 209 KSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAF 288 (902)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 288 (902)
..|++++|...|++.++.. +-+..++..|...|.+.|+.++|+..+++..+ ..+-|...+..+ ..+ +++++|.
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~--ldP~n~~~~~~L-a~i---~~~~kA~ 128 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLK--RHPGDARLERSL-AAI---PVEVKSV 128 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHH-HHh---ccChhHH
Confidence 4499999999999999886 33478889999999999999999999999997 333344444444 333 9999999
Q ss_pred HHHHHHHHCCCCcCHhhHHHHHHH--------HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHhHHHH
Q 048778 289 SLKDEMCEKGWQPSTRTYTVLIKA--------LCDISLTDKALSLFDEMVVKRCKPNAHTYTVL-IDRLCREGKIDEANG 359 (902)
Q Consensus 289 ~~~~~m~~~g~~p~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~ 359 (902)
..++++...... +..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|.+
T Consensus 129 ~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 129 TTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 999999987432 23444444443 5555 55555555 4433344445545554 899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 360 MCGKMLQDGHFPGVVTYNVLINGYCK-QGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGG 438 (902)
Q Consensus 360 ~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g 438 (902)
++.++.+.+.. +..-...|...|.. .++ +++..+++. .++-+...+..+...+.+.|+.++|..+++++...-
T Consensus 204 lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 99999998654 45557777778887 466 777777553 233588889999999999999999999999875421
Q ss_pred CC-CChhhHHH------------------------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048778 439 LF-PDEITYNI------------------------------LVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDG 487 (902)
Q Consensus 439 ~~-~~~~~~~~------------------------------ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (902)
.. |...++-- ++..+.+.++++.+.++.. +.|..... .+..
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~r~ 349 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEML--EERY 349 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHH--HHHH
Confidence 11 22222111 2444555566665554421 22332221 2222
Q ss_pred --HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCChhhHHHHHHHHHhcCC
Q 048778 488 --LCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQN-T-DLKTPHVLNSFLDVLCKENK 563 (902)
Q Consensus 488 --~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~ 563 (902)
....+...++...+..|.+.. +-+.....-+.-...+.|+.++|..+|+..... + ...+......++..|.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 223356666777777776652 224444444445566889999999999988763 1 22344455577787777765
Q ss_pred ---hhHHHHH----------------------HHHHHH-CCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 048778 564 ---LKEEYAM----------------------FGKILK-FGL-VP--SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGC 614 (902)
Q Consensus 564 ---~~~A~~~----------------------~~~~~~-~~~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 614 (902)
..++..+ +..... .+. ++ +...|..+..++.. ++.++|+..+.+....
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-- 505 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-- 505 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--
Confidence 3333222 111111 111 33 56777778877776 7888899988888775
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 048778 615 PPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN-SNVYSA 693 (902)
Q Consensus 615 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ 693 (902)
.|+......+...+...|++++|+..++++... +|+...+..+..++.+.|++++|..++++.++. .|+ ...+..
T Consensus 506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~ 581 (987)
T PRK09782 506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWW 581 (987)
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHH
Confidence 466555445556667899999999999988654 455566777788889999999999999999874 343 333333
Q ss_pred HHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048778 694 LLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCR 773 (902)
Q Consensus 694 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 773 (902)
+...+...| ++++|...++++++.+|. ...|..++..+.+
T Consensus 582 La~~l~~~G---------------------------------------r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~ 621 (987)
T PRK09782 582 LHAQRYIPG---------------------------------------QPELALNDLTRSLNIAPS-ANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHhCC---------------------------------------CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 333344446 999999999999999885 8899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 048778 774 AGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAK 850 (902)
Q Consensus 774 ~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~ 850 (902)
.|++++|+..++++++ ..|+... ..++.++...|++++|+..++++++. .| +...+..++.++...|++++|+
T Consensus 622 lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 622 RHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999 5577666 88999999999999999999999985 56 4588899999999999999999
Q ss_pred HHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 851 NLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
..++++++..+. ...+....+....+..+++.+.+.+++...-.
T Consensus 698 ~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 698 HYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999777643 23455566777777788888888777655443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-22 Score=213.79 Aligned_cols=694 Identities=13% Similarity=0.070 Sum_probs=486.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHH-hc-----------CChHHHHHHHHHH
Q 048778 162 YPCYSCLLMSLAKLDLGFVAYAVFVKLIAD------GFVLSAIDYRSVINALC-KS-----------GLVRAGEMFFCRV 223 (902)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------g~~~~~~~~~~ll~~~~-~~-----------~~~~~a~~~~~~~ 223 (902)
..+|..+...|.+.|+.++.+.+++.-.-. ++..+...-...+.+|. .. .-+..|..+|..+
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 458999999999999999999999886622 11112221112222222 11 1123444555544
Q ss_pred HhCCCCcCHH-HHHHHHHHHhccC--CHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC--C
Q 048778 224 LKHGFCLDTH-ICTSLVLGHCRGN--DLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEK--G 298 (902)
Q Consensus 224 ~~~g~~~~~~-~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g 298 (902)
-+.....++. ++... .|...| +++.|.+.|....+ .-++|+-..-.-.......|++..|+.+|...... .
T Consensus 121 ~ki~m~~~~~l~~~~~--~~l~~~~~~~~~A~a~F~~Vl~--~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~ 196 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQRG--FLLLEGDKSMDDADAQFHFVLK--QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPA 196 (1018)
T ss_pred HHhhccCcchhhhhhh--hhhhcCCccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcc
Confidence 4332222221 11111 122233 36999999999987 44567666655555566789999999999996654 4
Q ss_pred CCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHHHCCCCCCHHH
Q 048778 299 WQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCRE---GKIDEANGMCGKMLQDGHFPGVVT 375 (902)
Q Consensus 299 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~ 375 (902)
..||+. -.+..++.+.|+.+.|+..|....+.++ .++.++..|...-... ..+..+..++...-.... -+++.
T Consensus 197 ~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~ 272 (1018)
T KOG2002|consen 197 CKADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVA 272 (1018)
T ss_pred cCCCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHH
Confidence 455543 2233566799999999999999998743 2333333333222222 335566666666655432 37788
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048778 376 YNVLINGYCKQGRIIAAFELLALMEKRTCK--PNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGF 453 (902)
Q Consensus 376 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 453 (902)
.+.|.+.|.-.|++..++.+...+...... .-...|--+.+++...|++++|...+.+........-+..+.-+...+
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~ 352 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMY 352 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHH
Confidence 889999999999999999999988876321 123457788999999999999999999887753322234455678899
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048778 454 CREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLG----KPELANGFFGLMVKKGISPDEATITALADGHCKNGKT 529 (902)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 529 (902)
.+.|+++.+...|+...+.. +.+..+...|...|...+ ..+.|..++....+.- +.|...|..+...+....-+
T Consensus 353 i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~ 430 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW 430 (1018)
T ss_pred HHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH
Confidence 99999999999999998863 445667777777777664 5677777777777653 44777888877777655444
Q ss_pred HHHHHHHHHHH----hCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHHc
Q 048778 530 GEALMIFERMV----QNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKF---GLVPSV------VTYTILVDGLFRA 596 (902)
Q Consensus 530 ~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~------~~~~~li~~~~~~ 596 (902)
.. +.+|.... ..+..+.+...|.+...+...|++++|...|...... ...+|. .+--.+...+-..
T Consensus 431 ~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l 509 (1018)
T KOG2002|consen 431 AS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL 509 (1018)
T ss_pred HH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence 43 76666543 4455688899999999999999999999999988754 122222 2223345566677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048778 597 GNIALAMSMIEVMKLAGCPPNVH-TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKI 675 (902)
Q Consensus 597 g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 675 (902)
++.+.|.+.|...... .|+-+ .|..+.......+...+|..++....... ..++..++.+++.|.+...+..|.+-
T Consensus 510 ~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred hhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccH
Confidence 8999999999999986 45544 45555534445578899999999998764 66777888888899999999999887
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHH
Q 048778 676 VSFMVANG-CQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIE 754 (902)
Q Consensus 676 ~~~m~~~g-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 754 (902)
|....+.. ..+|....-+|.+.|...-.. ...+..-..+..+.|+++|.+++
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~---------------------------~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQALHN---------------------------PSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHHhcc---------------------------cccChHHHHHHHHHHHHHHHHHH
Confidence 77766542 236777777888766554310 00111222348899999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCHHHH
Q 048778 755 SCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILES-GFVPSFESH 833 (902)
Q Consensus 755 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~ 833 (902)
..+|.|..+-+.++-.++..|++.+|..+|.+..+....-.++..+++++|..+|+|..|+++|+...+. ....+.+..
T Consensus 640 ~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl 719 (1018)
T KOG2002|consen 640 RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL 719 (1018)
T ss_pred hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 9999999999999999999999999999999999865322223388999999999999999999999854 333467888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHH-------------------hcCCcHhHHHHHHHHHHhc
Q 048778 834 CTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFL-------------------LTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 834 ~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-------------------~~~g~~~~a~~~l~~~~~~ 894 (902)
..|++++.+.|.+.+|.+.+..+....+. ++...+.++..+ ...+..++|.++|..|...
T Consensus 720 ~~Lara~y~~~~~~eak~~ll~a~~~~p~-~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~ 798 (1018)
T KOG2002|consen 720 HYLARAWYEAGKLQEAKEALLKARHLAPS-NTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKN 798 (1018)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCc-cchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998665443 222333333222 1245667788888888877
Q ss_pred Ccc
Q 048778 895 HYR 897 (902)
Q Consensus 895 ~~~ 897 (902)
+-+
T Consensus 799 ~d~ 801 (1018)
T KOG2002|consen 799 GDK 801 (1018)
T ss_pred CCC
Confidence 755
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-20 Score=203.63 Aligned_cols=640 Identities=13% Similarity=0.044 Sum_probs=446.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCcC-HHHHHHHHHHHhccC-----------CHHHHHHHHHHh
Q 048778 197 AIDYRSVINALCKSGLVRAGEMFFCRVLKHG------FCLD-THICTSLVLGHCRGN-----------DLKEAFKVFDVM 258 (902)
Q Consensus 197 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~-~~~~~~li~~~~~~g-----------~~~~A~~~~~~m 258 (902)
..+|..+...|++.|+.++...+++...... ...+ ...++.+..-|...+ .+..|..+|+..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 3578888899999999999999998776211 1111 112233333332221 223455555544
Q ss_pred hhcCCCCCCHhhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCcCHhhHHHHHHHH--HhcCChHHHHHHHHHHHHCC-
Q 048778 259 SKEASYRPNSVTFTTLIHGLCEVGR--LDEAFSLKDEMCEKGWQPSTRTYTVLIKAL--CDISLTDKALSLFDEMVVKR- 333 (902)
Q Consensus 259 ~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~- 333 (902)
..- .--....+..--..|...|. ++.|...|....+.. +++... .+..++ ...+++..|+.+|......+
T Consensus 121 ~ki--~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp 195 (1018)
T KOG2002|consen 121 DKI--DMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILA--LLGKARIAYNKKDYRGALKYYKKALRINP 195 (1018)
T ss_pred HHh--hccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCc
Confidence 331 00111111111112333443 589999999888763 223322 233443 36789999999999977653
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHhCCCCCCHH
Q 048778 334 -CKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQ---GRIIAAFELLALMEKRTCKPNIR 409 (902)
Q Consensus 334 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~ 409 (902)
+.||+ ...+..++.+.|+.+.|...|.+.++.++ .++.++-.|...-... ..+..+..++...-... .-|++
T Consensus 196 ~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~ 271 (1018)
T KOG2002|consen 196 ACKADV--RIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPV 271 (1018)
T ss_pred ccCCCc--cchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcH
Confidence 44454 33444677899999999999999998632 1222222222222222 33555666666654432 34777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHH
Q 048778 410 TYNELMEGLCRMNKSYKAVHLLKRVVDGGLF--PDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDG--FTFTSII 485 (902)
Q Consensus 410 t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li 485 (902)
..+.|...+...|++..+..+...+...... .-...|..+.++|-..|++++|...|.+..+.. ++. ..+.-+.
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~Glg 349 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLG 349 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchh
Confidence 8888999999999999999999998875321 122357778999999999999999998888764 443 4455678
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 048778 486 DGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNG----KTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKE 561 (902)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 561 (902)
..+.+.|+++.+...|+.+.+.. +.+..+...+...|...+ ..+.|..++.+..+.. +.|...|-.+...+-..
T Consensus 350 Qm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 350 QMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT 427 (1018)
T ss_pred HHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc
Confidence 89999999999999999999873 446778888888887765 5677777777777643 35666676666666554
Q ss_pred CChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCC------CCHHHHHHHHHHH
Q 048778 562 NKLKEEYAMFGKIL----KFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLA---GCP------PNVHTYTVIINGL 628 (902)
Q Consensus 562 g~~~~A~~~~~~~~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~------p~~~~~~~li~~~ 628 (902)
.- ..++..|..+. ..+..+.....|.+...+...|++..|...|+..... ... ++..+-..+...+
T Consensus 428 d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 DP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred Ch-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 44 44477776654 3455678889999999999999999999999988764 112 3333445566777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCc
Q 048778 629 CQRGRFKEAEMLLFKMFDLGVSPN-HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGV 707 (902)
Q Consensus 629 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 707 (902)
-..++++.|.+.|..++.. .|. +..|..++-.....+...+|..+++...+. ...++..+..+...+.+..
T Consensus 507 E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~----- 578 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKS----- 578 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhh-----
Confidence 7788999999999999976 354 445555553334458889999999999873 4556667776776776666
Q ss_pred cccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhc-----------
Q 048778 708 LSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG--GSTTDFYNFLVVELCRA----------- 774 (902)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~----------- 774 (902)
.+..|.+-|+...+.- -+|+-+...|++.|.+.
T Consensus 579 ----------------------------------~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~ 624 (1018)
T KOG2002|consen 579 ----------------------------------EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKE 624 (1018)
T ss_pred ----------------------------------hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHH
Confidence 5555666555554443 35677777888866533
Q ss_pred -CCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 775 -GRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKN 851 (902)
Q Consensus 775 -g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~ 851 (902)
+..++|+++|.++++ ..|.+.+ +.++-++...|++++|..+|.+..+.. .....+|..++++|..+|++..|++
T Consensus 625 kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHH
Confidence 567899999999998 5677777 999999999999999999999999763 3455789999999999999999999
Q ss_pred HHHHHHhCCC-CCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 852 LVSDLFRYNG-IEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 852 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
+|+..++.-. ..+..+...|..++++.|.+.+|.+.+......-
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 9999987755 3345567778899999999999999887765543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-23 Score=209.99 Aligned_cols=441 Identities=15% Similarity=0.091 Sum_probs=324.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 048778 378 VLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREG 457 (902)
Q Consensus 378 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 457 (902)
.|..-..+.|++++|++.-...-..+ +.+....-.+-..+.+..+.+....--....+.. ..-..+|..+.+.+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhc
Confidence 34444455566666655544433321 1111222222233444444444433322222221 123456777777777778
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 048778 458 QLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEA-TITALADGHCKNGKTGEALMIF 536 (902)
Q Consensus 458 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 536 (902)
++++|+.+++.+++.. +.....|..+..++...|+.+.|...|.+.++. .|+.. ..+-+....-..|+..+|...+
T Consensus 131 ~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 131 QLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 8888888888777654 335667777788888888888888888777765 34333 2233444555577888888777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 048778 537 ERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPS-VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCP 615 (902)
Q Consensus 537 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 615 (902)
.+.++... .=.+.|+.|...+-..|+.-.|+..|++..+ +.|+ ...|-.|...|...+.++.|+..|.+..... +
T Consensus 208 lkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 208 LKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 77766422 2245677788888888888888888888876 4455 5678888888999999999999999888752 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 048778 616 PNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPN-HITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSA 693 (902)
Q Consensus 616 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ 693 (902)
...+.+..+...|..+|..+-|+..+++.++. .|+ ...|+.|..++-..|++.+|...|.+.+. +.| .....+.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~N 359 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNN 359 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHH
Confidence 34567888888899999999999999999885 455 78899999999999999999999999987 345 4567788
Q ss_pred HHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048778 694 LLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCR 773 (902)
Q Consensus 694 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 773 (902)
|...+...| .+++|..+|.++++..|.-..+++.|+..|.+
T Consensus 360 Lgni~~E~~---------------------------------------~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq 400 (966)
T KOG4626|consen 360 LGNIYREQG---------------------------------------KIEEATRLYLKALEVFPEFAAAHNNLASIYKQ 400 (966)
T ss_pred HHHHHHHhc---------------------------------------cchHHHHHHHHHHhhChhhhhhhhhHHHHHHh
Confidence 888888888 99999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 048778 774 AGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF-ESHCTVIQGLQSEGRNKQAK 850 (902)
Q Consensus 774 ~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~ 850 (902)
+|++++|+..|++++. ++|.-.. +.++..|...|+.+.|++.+.+++.. .|.. +.++.|+.+|...|+..+|+
T Consensus 401 qgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 401 QGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred cccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHH
Confidence 9999999999999998 8887766 89999999999999999999999884 6765 88889999999999999999
Q ss_pred HHHHHHHhCCCCCcchhHHHHHHHH
Q 048778 851 NLVSDLFRYNGIEEKAAVLPYIEFL 875 (902)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (902)
.-|+.+++..+.. +..+..++.++
T Consensus 477 ~sY~~aLklkPDf-pdA~cNllh~l 500 (966)
T KOG4626|consen 477 QSYRTALKLKPDF-PDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHccCCCC-chhhhHHHHHH
Confidence 9999998776443 33444555443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-22 Score=202.09 Aligned_cols=459 Identities=15% Similarity=0.152 Sum_probs=359.9
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048778 341 YTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCR 420 (902)
Q Consensus 341 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 420 (902)
...|.+-..+.|++.+|++.....-..+.. +....-.+-.++.+..+.+....--....+.. +--..+|+.+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 445666677788888888876665544321 22222233345566666666554433333332 2345678888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHH
Q 048778 421 MNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTF-TSIIDGLCKLGKPELANG 499 (902)
Q Consensus 421 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~ 499 (902)
.|++++|+.+++.+++... ..+..|..+..++...|+.+.|.+.|.+..+. .|+.... +.+...+-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 8999999999988887533 35677888888899999999999999888875 4555443 445555666899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048778 500 FFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKT-PHVLNSFLDVLCKENKLKEEYAMFGKILKFG 578 (902)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 578 (902)
.+.+.++... --.+.|+.|...+...|+...|+..|++..+. .|+ ...|-.|...|-..+.+++|...+.+....
T Consensus 206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 9988887632 24567888888999999999999999998874 333 457888899999999999999999988763
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048778 579 LVPS-VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPN-VHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITY 656 (902)
Q Consensus 579 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 656 (902)
.|+ ...+..+...|..+|.++.|+..|++.++. .|+ ...|+.|..++-..|++.+|...+.+.+... +......
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 454 667777888899999999999999999986 455 4689999999999999999999999999864 4447788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGCQLN-SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSK 735 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (902)
+.|...|...|++++|..+|....+ +.|. ....+.|...|.++|
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqg--------------------------------- 402 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQG--------------------------------- 402 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcc---------------------------------
Confidence 9999999999999999999999987 5665 457788888898888
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHH
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDD 813 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~ 813 (902)
++++|+..|++++...|.-..+|+.++..|...|+.+.|+..|.+++. +.|.-.. +.|+..|...|++.+
T Consensus 403 ------nl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 403 ------NLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred ------cHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHH
Confidence 999999999999999999999999999999999999999999999998 6676655 999999999999999
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC-------CHHHHHHHHHHHH
Q 048778 814 CLEFMNLILESGFVPSF-ESHCTVIQGLQSEG-------RNKQAKNLVSDLF 857 (902)
Q Consensus 814 A~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g-------~~~~A~~~~~~~~ 857 (902)
|++-++..++ ++||. +.|..+++++.--. +.++-.++.++-+
T Consensus 475 AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql 524 (966)
T KOG4626|consen 475 AIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQL 524 (966)
T ss_pred HHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 9999999988 47875 77877777663322 2345555555544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-18 Score=198.70 Aligned_cols=256 Identities=14% Similarity=0.058 Sum_probs=208.1
Q ss_pred cCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 561 ENKLKEEYAMFGKILKFG-LVP-SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAE 638 (902)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 638 (902)
.+.+++|...|+...+.+ ..| ....|+.+...+...|++++|+..+++.++.. +.+...|..+...+...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467888999998888754 223 45668888888889999999999999998863 334568888889999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCC
Q 048778 639 MLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSD 717 (902)
Q Consensus 639 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 717 (902)
..++++++.. +.+...|..+...+...|++++|...+++.++. .| +...+..+...+.+.|
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g--------------- 447 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEG--------------- 447 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCC---------------
Confidence 9999998764 556888999999999999999999999999874 45 4566777777787888
Q ss_pred CCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh
Q 048778 718 AGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
++++|...|+++++..|.++..++.++..+...|++++|++.|+++++.....+..
T Consensus 448 ------------------------~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~ 503 (615)
T TIGR00990 448 ------------------------SIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM 503 (615)
T ss_pred ------------------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccc
Confidence 99999999999999999999999999999999999999999999998843221111
Q ss_pred H-------HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 798 I-------TSIIGCYCKERKYDDCLEFMNLILESGFVPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 798 ~-------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
. ......+...|++++|.++++++++. .|+. ..+..++.++...|++++|+.+++++++...
T Consensus 504 ~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 504 YMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 1 11122344579999999999999875 4654 5788899999999999999999999877654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-18 Score=198.24 Aligned_cols=255 Identities=14% Similarity=0.063 Sum_probs=209.8
Q ss_pred HcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 595 RAGNIALAMSMIEVMKLAG-CPP-NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHA 672 (902)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 672 (902)
..+++++|.+.|++..+.+ ..| +...|..+...+...|++++|+..+++.++.. +.+...|..+...+...|++++|
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 3478999999999999864 233 44678888888999999999999999999863 33467888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHH
Q 048778 673 FKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDR 752 (902)
Q Consensus 673 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 752 (902)
...++++++. -+.+..+|..+...+...| ++++|...|++
T Consensus 385 ~~~~~~al~~-~p~~~~~~~~lg~~~~~~g---------------------------------------~~~~A~~~~~k 424 (615)
T TIGR00990 385 EEDFDKALKL-NSEDPDIYYHRAQLHFIKG---------------------------------------EFAQAGKDYQK 424 (615)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHcC---------------------------------------CHHHHHHHHHH
Confidence 9999999874 2335778888888888888 99999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH
Q 048778 753 IESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF 830 (902)
Q Consensus 753 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 830 (902)
+++.+|.+...+..++..+.+.|++++|+..|+++++ ..|+... ..++.++...|++++|+..++++++. .|+.
T Consensus 425 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~ 500 (615)
T TIGR00990 425 SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKET 500 (615)
T ss_pred HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCcc
Confidence 9999999999999999999999999999999999998 4465444 88999999999999999999999874 3321
Q ss_pred -H-------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 831 -E-------SHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 831 -~-------~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
. .+......+...|++++|+.+++++++..+. +...+..++..+...|++++|++.+++..+..
T Consensus 501 ~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 501 KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 1 1111222333469999999999999877643 34467788999999999999999999886653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-20 Score=200.24 Aligned_cols=301 Identities=14% Similarity=0.143 Sum_probs=224.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 048778 556 DVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPN---VHTYTVIINGLCQRG 632 (902)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g 632 (902)
..+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..++..|...|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34456677777888888777643 23455777777888888888888888888776432221 245677788888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCcCCcc
Q 048778 633 RFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNS----NVYSALLAGLVSSNKASGVL 708 (902)
Q Consensus 633 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~~~~~~~~ 708 (902)
++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~------ 194 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG------ 194 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC------
Confidence 8888888888887653 456777888888888888888888888888765322221 13344555566666
Q ss_pred ccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 709 SISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIM 788 (902)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (902)
++++|.+.++++++..|.+..++..++..|.+.|++++|++.++++.
T Consensus 195 ---------------------------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 195 ---------------------------------DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred ---------------------------------CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88999999999888888888888888889999999999999999988
Q ss_pred HcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchh
Q 048778 789 KSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAA 867 (902)
Q Consensus 789 ~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ 867 (902)
+.+....... ..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++++. .|+...
T Consensus 242 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~ 317 (389)
T PRK11788 242 EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRG 317 (389)
T ss_pred HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHH
Confidence 7432221223 77888888999999999999988875 566666678888888999999999999888665 456666
Q ss_pred HHHHHHHHhc---CCcHhHHHHHHHHHHhcCcccCCC
Q 048778 868 VLPYIEFLLT---GDELGKSIDLLNLIDQVHYRQRPV 901 (902)
Q Consensus 868 ~~~l~~~~~~---~g~~~~a~~~l~~~~~~~~~~~~~ 901 (902)
+..++..+.. .|+.++++.++++|.++++++.|+
T Consensus 318 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 318 FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 6666666554 568888999999999888888775
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-18 Score=192.67 Aligned_cols=331 Identities=15% Similarity=0.070 Sum_probs=177.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048778 411 YNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCK 490 (902)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (902)
...++..+.+.|++++|..+++........+ ...+..++.+....|++++|...++++.... +.+...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 4445566666777777777777766654433 3333334455556677777777777766653 3345556666666666
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 048778 491 LGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAM 570 (902)
Q Consensus 491 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 570 (902)
.|++++|...++++.+.. +.+...+..+...+...|+.++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 666666666666666542 224555556666666666666666666655443221 12222222 234555666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 048778 571 FGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKE----AEMLLFKMFD 646 (902)
Q Consensus 571 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~ 646 (902)
++.+.+....++...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...+++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 6655543222233333334445555556666666655555542 3344455555555555555553 4555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcC
Q 048778 647 LGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEH 725 (902)
Q Consensus 647 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (902)
.. +.+...+..+...+.+.|++++|...+++..+. .| +...+..+...+.+.|
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G----------------------- 332 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVG----------------------- 332 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC-----------------------
Confidence 32 233445555555555555555555555555542 23 2334444444454544
Q ss_pred CcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 726 DDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|...|+++.+.+|.+...+..++.++...|++++|+..|+++.+
T Consensus 333 ----------------~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 333 ----------------QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred ----------------CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555555554444444445555555555555555555555
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-19 Score=192.79 Aligned_cols=302 Identities=12% Similarity=0.019 Sum_probs=168.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHhcc
Q 048778 169 LMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLD---THICTSLVLGHCRG 245 (902)
Q Consensus 169 i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 245 (902)
...+...|++++|+..|.++.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344567788888888888888764 33455677777778888888888888887776532221 24566677777777
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH----hhHHHHHHHHHhcCChHH
Q 048778 246 NDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPST----RTYTVLIKALCDISLTDK 321 (902)
Q Consensus 246 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~ 321 (902)
|++++|..+|+++.+ ..+++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 121 g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVD--EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 777777777777765 23345667777777777777777777777777665433221 123334444455555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 048778 322 ALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEK 401 (902)
Q Consensus 322 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 401 (902)
|.+.|+++.+.. +.+...+..+...|.+.|++++|.++++++.+.+......+++.++.+|++.|++++|.+.++.+.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555432 1123344444455555555555555555554432211123344444444444444444444444443
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048778 402 RTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTF 481 (902)
Q Consensus 402 ~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 481 (902)
. . |+...+..++..+.+.|++++|..+++++.+. .|+..++
T Consensus 278 ~--~-----------------------------------p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~ 318 (389)
T PRK11788 278 E--Y-----------------------------------PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGF 318 (389)
T ss_pred h--C-----------------------------------CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHH
Confidence 3 1 33333344455555555555555555554443 3455555
Q ss_pred HHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCH
Q 048778 482 TSIIDGLCK---LGKPELANGFFGLMVKKGISPDE 513 (902)
Q Consensus 482 ~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 513 (902)
+.++..++. .|+.++++.++++|.++++.|++
T Consensus 319 ~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 319 HRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 555544443 33455555555555554444433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.8e-15 Score=157.43 Aligned_cols=625 Identities=12% Similarity=0.055 Sum_probs=276.7
Q ss_pred HHHHHHHHHhhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 048778 143 ILKLIVALDGLSKDGFKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCR 222 (902)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 222 (902)
+.+|..++.++.+.... +...|.+|...|-..|+.+.+...+-.+-... +-|...|..+.....+.|.+++|.-.|.+
T Consensus 155 ~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred HHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 44455555554443322 34455555555555555555555544444333 22334455555555555555555555555
Q ss_pred HHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHh-----hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048778 223 VLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSV-----TFTTLIHGLCEVGRLDEAFSLKDEMCEK 297 (902)
Q Consensus 223 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~ 297 (902)
+++.. +++....---+..|-+.|+...|.+-|.++... ++|... +--.+++.+...++-+.|.+.++.....
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~--~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQL--DPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 55443 222222223344445555555555555555442 111111 1112233333444444555544444432
Q ss_pred -CCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH--HCCCCCCHH
Q 048778 298 -GWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKML--QDGHFPGVV 374 (902)
Q Consensus 298 -g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~~~~~ 374 (902)
+-..+..++++++..+.+...++.|......+..+..++|..-+.+- +.-..-+.-.. ..+..++..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----------~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----------ERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----------hhccccccccccCCCCCCccch
Confidence 11223334444444455555555554444444432111111111000 00000000000 001111211
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 048778 375 TYNVLINGYCKQGRIIAAFELLALMEKRT--CKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDG 452 (902)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 452 (902)
.. -+.-++......+...-+.....+.. +.-+...|..+..++...|++.+|+.+|..+.......+...|-.+..+
T Consensus 380 v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 VI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 10 11112222222222222333333333 2234445666666677777777777777766665444455666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHH
Q 048778 453 FCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVK--------KGISPDEATITALADGHC 524 (902)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~li~~~~ 524 (902)
|...|.++.|.+.|+..+... +.+..+-.+|...+-+.|+.++|.+.+..+.. .+..|+........+.+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 767777777777776666543 33444555566666667777777666666431 223344444444555566
Q ss_pred hcCCHHHHHHHHHHHHhCC----------------------CCCChhhHHHHHHHHHhcCChhHHHHH------HHHHHH
Q 048778 525 KNGKTGEALMIFERMVQNT----------------------DLKTPHVLNSFLDVLCKENKLKEEYAM------FGKILK 576 (902)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~li~~~~~~g~~~~A~~~------~~~~~~ 576 (902)
+.|+.++-......|+... ..-.......++.+-.+.++......- +.....
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 6666665444433333210 111111122222222222221111110 000111
Q ss_pred CCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 048778 577 FGLVPSV--VTYTILVDGLFRAGNIALAMSMIEVMKLAGC-PPNVH----TYTVIINGLCQRGRFKEAEMLLFKMFDL-G 648 (902)
Q Consensus 577 ~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~-g 648 (902)
.|+.-+. ..+.-++.++++.+++++|+.+...+..... .-+.. .-...+.+.+..+++..|...++.|... +
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~ 697 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQ 697 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 1222111 2334455566677777777777666655321 11111 1233445556666777777777666632 1
Q ss_pred CC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcC
Q 048778 649 VS--P-NHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEH 725 (902)
Q Consensus 649 ~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (902)
.. | -...|+...+.+.+.|+-.--.+++..+. .+..+...
T Consensus 698 ~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~------------------~~~~~~~~------------------- 740 (895)
T KOG2076|consen 698 FYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLL------------------VKNKDDTP------------------- 740 (895)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------ccCccCCc-------------------
Confidence 11 1 12233333333333332222222222211 11110000
Q ss_pred CcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHcCCCc-
Q 048778 726 DDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG----------RIVEADRIMKDIMKSGVFP- 794 (902)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~p- 794 (902)
..+...+..+..++.+..|...|-.+...+|.+|..-..++.++...- ..-.++..+++..+.....
T Consensus 741 --~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~ 818 (895)
T KOG2076|consen 741 --PLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEE 818 (895)
T ss_pred --ceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHH
Confidence 111112233445568899999999988888888877776666654332 1223334443333321111
Q ss_pred hHhH-HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 795 AKAI-TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 795 ~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
.... .+++.+|-..|-..-|..++++.++
T Consensus 819 ~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 819 KQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 1122 6666666666666666666666664
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-15 Score=158.99 Aligned_cols=633 Identities=12% Similarity=0.079 Sum_probs=370.2
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 048778 211 GLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSL 290 (902)
Q Consensus 211 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 290 (902)
|++++|..++.++++.. +.....|..|...|-..|+.+++...+-..-. -.+.|...|..+.....+.|+++.|.-+
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 55555555555555443 33344455555555555555555544433332 2333444555555555555555555555
Q ss_pred HHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcCCHhHHHHHHHHHHH
Q 048778 291 KDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHT----YTVLIDRLCREGKIDEANGMCGKMLQ 366 (902)
Q Consensus 291 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~ 366 (902)
|.+.++... ++...+---...|-+.|+...|.+-|.++.....+.|..- --..++.+...++-+.|.+.++....
T Consensus 230 y~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 555544321 1112222223334445555555555555554432112111 11223344444444555555555444
Q ss_pred CC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC---------------------------CCCCCHHHHHHHHHHH
Q 048778 367 DG-HFPGVVTYNVLINGYCKQGRIIAAFELLALMEKR---------------------------TCKPNIRTYNELMEGL 418 (902)
Q Consensus 367 ~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------~~~p~~~t~~~li~~~ 418 (902)
.+ -.-+...++.++..|.+...++.|......+... ++.++... .-++-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 11 1123334555555555555555555555544431 12222222 1233344
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 048778 419 CRMNKSYKAVHLLKRVVDGG--LFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPEL 496 (902)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 496 (902)
......+....+.....+.. +.-+...|.-+.++|...|.+.+|+.+|..+......-+...|-.+..+|...|..+.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 45555555555666666655 4446678888999999999999999999999987666678899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCChhhHHHHHHHHHhcCChhHHH
Q 048778 497 ANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQ--------NTDLKTPHVLNSFLDVLCKENKLKEEY 568 (902)
Q Consensus 497 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~ 568 (902)
|.+.|...+... +-+...-.+|...+.+.|+.++|.+.++.+.. .+..|+........+.+.+.|+.++=.
T Consensus 468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999873 23556667778889999999999999998653 123344445555667788888888766
Q ss_pred HHHHHHHHCC-----C-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHCCCCCCH--
Q 048778 569 AMFGKILKFG-----L-----------------VPSVVTYTILVDGLFRAGNIALAMSMI------EVMKLAGCPPNV-- 618 (902)
Q Consensus 569 ~~~~~~~~~~-----~-----------------~p~~~~~~~li~~~~~~g~~~~A~~~~------~~m~~~~~~p~~-- 618 (902)
.+-..|+... + .....+.-..+.+-.+.++.....+-. .--...|+..+.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 5555554311 1 111111222233333333321111111 111112222222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC--CC-CHH
Q 048778 619 HTYTVIINGLCQRGRFKEAEMLLFKMFDLGV-SPNH----ITYSILVRAHASTGRLDHAFKIVSFMVAN-GC--QL-NSN 689 (902)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~--~~-~~~ 689 (902)
..+.-++.++++.+++++|..+...+....+ ..+. ..-...+.+.+..+++..|...++.|+.. +. .| -..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 2456678889999999999999988875421 1122 23345566778899999999999999864 11 22 123
Q ss_pred HHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC-HHHHHHHH
Q 048778 690 VYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGST-TDFYNFLV 768 (902)
Q Consensus 690 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~ 768 (902)
.|+...+...+.+ +----.+.+..+....+.+ +......+
T Consensus 707 l~n~~~s~~~~~~---------------------------------------q~v~~~R~~~~~~~~~~~~~~~l~~i~g 747 (895)
T KOG2076|consen 707 LWNLDFSYFSKYG---------------------------------------QRVCYLRLIMRLLVKNKDDTPPLALIYG 747 (895)
T ss_pred HHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHhccCccCCcceeeeec
Confidence 4554444444444 3333334444455555444 55555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHcc----------CChHHHHHHHHHHHHcCCCC-CHHHHHH
Q 048778 769 VELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKE----------RKYDDCLEFMNLILESGFVP-SFESHCT 835 (902)
Q Consensus 769 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 835 (902)
......+.+.-|+..|-.+.. ..|+... ..++-++.+. -.+-++..++.+..+....- .-+++..
T Consensus 748 h~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YN 825 (895)
T KOG2076|consen 748 HNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYN 825 (895)
T ss_pred hhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 777888999999999999988 4566444 3344333321 13566777777777543221 3478888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-------c----chhHHHHHHHHhcCCcHhHHHHHHHH
Q 048778 836 VIQGLQSEGRNKQAKNLVSDLFRYNGIE-------E----KAAVLPYIEFLLTGDELGKSIDLLNL 890 (902)
Q Consensus 836 l~~~l~~~g~~~~A~~~~~~~~~~~~~~-------~----~~~~~~l~~~~~~~g~~~~a~~~l~~ 890 (902)
++++|...|-.--|+.+|++++..++.+ + ..+-+.|.-.|.+.|+..-|.++++.
T Consensus 826 igRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 826 IGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 9999999999999999999998775221 1 22234555668899999999988863
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-14 Score=145.37 Aligned_cols=603 Identities=10% Similarity=0.025 Sum_probs=355.7
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 048778 211 GLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSL 290 (902)
Q Consensus 211 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 290 (902)
++...|+.++....+.+ +.++..|.+-.+.--..|++..|..+..+-.+ .++.+...|---| +....+.|..+
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe--~cprSeDvWLeai----RLhp~d~aK~v 337 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCE--ECPRSEDVWLEAI----RLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHh--hCCchHHHHHHHH----hcCChHHHHHH
Confidence 56778888888887765 33445555555555667788888887776665 5666666665443 34445556555
Q ss_pred HHHHHHCCCCcC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 048778 291 KDEMCEKGWQPS-TRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGH 369 (902)
Q Consensus 291 ~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 369 (902)
.....+. -|+ +..|. .+---..+...=.++++..++. ++.++..|... ......+.|..++.+..+. +
T Consensus 338 vA~Avr~--~P~Sv~lW~---kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvec-c 406 (913)
T KOG0495|consen 338 VANAVRF--LPTSVRLWL---KAADLESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVEC-C 406 (913)
T ss_pred HHHHHHh--CCCChhhhh---hHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHh-c
Confidence 5555543 222 22221 1111122233334555555554 23244444333 3345556677777777664 2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCChhh
Q 048778 370 FPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVV----DGGLFPDEIT 445 (902)
Q Consensus 370 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~----~~g~~~~~~~ 445 (902)
+.+...|. +|.+..-++.|.++++...+. ++-+...|.+....--.+|+.+...+++.+.+ ..|+..+...
T Consensus 407 p~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdq 481 (913)
T KOG0495|consen 407 PQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQ 481 (913)
T ss_pred cchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHH
Confidence 22333333 344555667777777777664 45566666666666666777777666665543 3566667777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048778 446 YNILVDGFCREGQLDIALKIFNSMSIFGLVP--DGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGH 523 (902)
Q Consensus 446 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 523 (902)
|-.=...+-..|..--+..+....+.-|+.. -..||..-...|.+.+.++-|..+|...++. ++.+...|...+..-
T Consensus 482 Wl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~e 560 (913)
T KOG0495|consen 482 WLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFE 560 (913)
T ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHH
Confidence 7666666777777777777777766665432 2356777777777777777777777777665 334566666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048778 524 CKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAM 603 (902)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 603 (902)
-..|..++-..+|++.... ++.....|-....-+-..|++..|..++....+... .+...|-.-+.......+++.|.
T Consensus 561 k~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred HhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHH
Confidence 6677777777777777664 334445555555666667777777777777776532 25666777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048778 604 SMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPN-HITYSILVRAHASTGRLDHAFKIVSFMVAN 682 (902)
Q Consensus 604 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 682 (902)
.+|.+.... .|....|.--++...-.++.++|.+++++.++. -|+ ...|..+...+-+.++++.|.+.|..-.+.
T Consensus 639 ~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 639 DLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred HHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 777777653 566666666666666677777777777777764 344 456666777777777777777777665542
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHH
Q 048778 683 GCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTD 762 (902)
Q Consensus 683 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 762 (902)
++-....|-.|...--+.| .+-.|..++++..-++|.+..
T Consensus 715 -cP~~ipLWllLakleEk~~---------------------------------------~~~rAR~ildrarlkNPk~~~ 754 (913)
T KOG0495|consen 715 -CPNSIPLWLLLAKLEEKDG---------------------------------------QLVRARSILDRARLKNPKNAL 754 (913)
T ss_pred -CCCCchHHHHHHHHHHHhc---------------------------------------chhhHHHHHHHHHhcCCCcch
Confidence 2223345545544444444 666666666666666666666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 048778 763 FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGL 840 (902)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l 840 (902)
.|...+..=.+.|+.+.|..+..++++.. |+... .--++..-+-++-..+.+.+++ .+-|+.....++..+
T Consensus 755 lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lf 827 (913)
T KOG0495|consen 755 LWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLF 827 (913)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHH
Confidence 66666666666666666666666666533 32222 2223333333332222222222 244445555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHH
Q 048778 841 QSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 841 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 891 (902)
....++++|.+.|.++++.+.. ...+|.-+....+..|.-++-.++++.-
T Consensus 828 w~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5566666666666666555433 2334444444455555555555555443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.2e-17 Score=184.98 Aligned_cols=382 Identities=10% Similarity=0.022 Sum_probs=295.5
Q ss_pred HHHcCCHhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 048778 348 LCREGKIDEANGMCGKMLQD--GHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSY 425 (902)
Q Consensus 348 ~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~ 425 (902)
+.+..+++.-.-+|....++ .-.-+......++..+.+.|++++|+.+++........ +...+..++.++...|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 55667777666666554432 01112333445677788999999999999999877533 3444555566777899999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 048778 426 KAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMV 505 (902)
Q Consensus 426 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 505 (902)
+|...++++.+..+ .+...+..+...+.+.|++++|...++++.... +.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999998643 456678888889999999999999999998763 4567788889999999999999999999887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048778 506 KKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVT 585 (902)
Q Consensus 506 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 585 (902)
..... +...+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++|...++++.... +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 76433 33344333 3478899999999999998876443445555566788899999999999999998754 345778
Q ss_pred HHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 586 YTILVDGLFRAGNIAL----AMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
+..+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 8889999999999986 899999998864 5567789999999999999999999999999864 445677888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 662 AHASTGRLDHAFKIVSFMVANGCQLNSN-VYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 662 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
++.+.|++++|...++++.+. .|+.. .+..+...+...|
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G-------------------------------------- 366 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAG-------------------------------------- 366 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCC--------------------------------------
Confidence 999999999999999999874 55543 3334456677777
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
+.++|...|+++++..|.+. ..++++|...+.+..+.
T Consensus 367 -~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 367 -KTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISA 403 (656)
T ss_pred -CHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHh
Confidence 99999999999999887664 34566777777777664
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-16 Score=185.39 Aligned_cols=424 Identities=12% Similarity=0.031 Sum_probs=263.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048778 337 NAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELME 416 (902)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 416 (902)
+.....-.+......|+.++|.+++.+..... +.+...+..+...+.+.|++++|.+++++..+.. +.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44444455555666677777777777766421 2344456666777777777777777777766542 223445556666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 048778 417 GLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPEL 496 (902)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 496 (902)
.+...|+.++|...++++.+... .+.. +..+...+...|+.++|+..++++.+.. +.+...+..+...+...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 66667777777777777666422 2333 5566666666677777777777666653 2344445555566666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh---hHHHHHHHH
Q 048778 497 ANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKL---KEEYAMFGK 573 (902)
Q Consensus 497 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~ 573 (902)
|+..++.... .|+.. .. + ....+.....- .+.......+++ ++|+..++.
T Consensus 169 Al~~l~~~~~---~p~~~--~~-l-------~~~~~~~~~r~--------------~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 169 ALGAIDDANL---TPAEK--RD-L-------EADAAAELVRL--------------SFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHHHHhCCC---CHHHH--HH-H-------HHHHHHHHHHh--------------hcccccChhHHHHHHHHHHHHHHH
Confidence 6666654432 12200 00 0 00000000000 000001111223 667777777
Q ss_pred HHHC-CCCCCHH-HHH----HHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 574 ILKF-GLVPSVV-TYT----ILVDGLFRAGNIALAMSMIEVMKLAGCP-PNVHTYTVIINGLCQRGRFKEAEMLLFKMFD 646 (902)
Q Consensus 574 ~~~~-~~~p~~~-~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 646 (902)
+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+.. -..+...|...|++++|+..|+++..
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 7643 1222221 111 1133445778899999999998876522 3321 22246678888999999999998875
Q ss_pred CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHhcCCcCCccc
Q 048778 647 LGVSP---NHITYSILVRAHASTGRLDHAFKIVSFMVANGC-----------QLNS---NVYSALLAGLVSSNKASGVLS 709 (902)
Q Consensus 647 ~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-----------~~~~---~~~~~l~~~~~~~~~~~~~~~ 709 (902)
..-.. .......+..++...|++++|.++++.+.+..- .|+. ..+..+...+...|
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g------- 373 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN------- 373 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC-------
Confidence 43111 134566667778888999999999998876410 1121 12333444444555
Q ss_pred cccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 710 ISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
+.++|++.+++++...|.+...+..++..+...|++++|++.++++++
T Consensus 374 --------------------------------~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 374 --------------------------------DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred --------------------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998
Q ss_pred cCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048778 790 SGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTV 836 (902)
Q Consensus 790 ~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 836 (902)
..|+... ...+..+...|++++|..+++++++. .|+......+
T Consensus 422 --l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 422 --LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRL 466 (765)
T ss_pred --hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 5677655 77777889999999999999999975 6765444334
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-16 Score=185.11 Aligned_cols=429 Identities=10% Similarity=0.041 Sum_probs=301.6
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 302 STRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLIN 381 (902)
Q Consensus 302 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 381 (902)
+..-..-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|.+++++.++... .+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 44444555666778999999999999998632 34666799999999999999999999999988632 35667788889
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 048778 382 GYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDI 461 (902)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 461 (902)
.+...|++++|...+++..+.. +.+.. +..+...+...|+.++|+..++++.+..+ .+...+..+...+...|..+.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHH
Confidence 9999999999999999998873 33455 88888899999999999999999998644 355556667888888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHH
Q 048778 462 ALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKT---GEALMIFER 538 (902)
Q Consensus 462 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~ 538 (902)
|++.++.... .|+.. .-+ ....+....... +.......+++ ++|+..++.
T Consensus 169 Al~~l~~~~~---~p~~~---~~l-------~~~~~~~~~r~~--------------~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 169 ALGAIDDANL---TPAEK---RDL-------EADAAAELVRLS--------------FMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHHHHhCCC---CHHHH---HHH-------HHHHHHHHHHhh--------------cccccChhHHHHHHHHHHHHHHH
Confidence 9999987664 23310 000 000000000000 00000111122 556666666
Q ss_pred HHhC-CCCCChh-hHH----HHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048778 539 MVQN-TDLKTPH-VLN----SFLDVLCKENKLKEEYAMFGKILKFGLV-PSVVTYTILVDGLFRAGNIALAMSMIEVMKL 611 (902)
Q Consensus 539 ~~~~-~~~~~~~-~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (902)
+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++..
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 6543 1112211 111 1123345667788888888887765422 322 112246677888888888888888765
Q ss_pred CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHH
Q 048778 612 AGCPP---NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLG-----------VSPN---HITYSILVRAHASTGRLDHAFK 674 (902)
Q Consensus 612 ~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~---~~~~~~l~~~~~~~g~~~~A~~ 674 (902)
..... .......+..++...|++++|..+++.+.+.. -.|+ ...+..+...+...|++++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 42110 12345556667788888888888888887542 1123 2355677888899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHH
Q 048778 675 IVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIE 754 (902)
Q Consensus 675 ~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 754 (902)
.++++... .+.+...+..+...+...| +.++|++.+++++
T Consensus 381 ~l~~al~~-~P~n~~l~~~lA~l~~~~g---------------------------------------~~~~A~~~l~~al 420 (765)
T PRK10049 381 RARELAYN-APGNQGLRIDYASVLQARG---------------------------------------WPRAAENELKKAE 420 (765)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHhcC---------------------------------------CHHHHHHHHHHHH
Confidence 99999874 3446778888888888888 9999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHH
Q 048778 755 SCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCY 805 (902)
Q Consensus 755 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~ 805 (902)
+..|.+...+..++..+...|++++|+.+++++++ ..|+... ..+-..+
T Consensus 421 ~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 421 VLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred hhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999998 5677765 5444444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-13 Score=140.73 Aligned_cols=463 Identities=10% Similarity=0.036 Sum_probs=347.6
Q ss_pred HHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhcC
Q 048778 347 RLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLAL----MEKRTCKPNIRTYNELMEGLCRMN 422 (902)
Q Consensus 347 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~~p~~~t~~~li~~~~~~g 422 (902)
+|.+..-++.|..+++...+. ++.+...|.+-...--.+|+.+...+++++ +..+|+..+...|..=...|-..|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 344445555566666555543 444555555544444455555555555433 334566666666666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 048778 423 KSYKAVHLLKRVVDGGLFP--DEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGF 500 (902)
Q Consensus 423 ~~~~A~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 500 (902)
..-.+..+....+.-|+.. -..||+.-...|.+.+.++-|..+|...++-- +-+...|......--..|..+.-..+
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 6666666666665555432 24577777788888888888888888877642 44566777777666677888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048778 501 FGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLV 580 (902)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 580 (902)
+++.... ++-....|......+-..|++..|..++.+..+... .+...+-+-+.......++++|..+|.+... ..
T Consensus 573 lqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~--~s 648 (913)
T KOG0495|consen 573 LQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS--IS 648 (913)
T ss_pred HHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence 9888876 344667777777888889999999999999888643 4677888888889999999999999999886 45
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 581 PSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILV 660 (902)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 660 (902)
|+...|.--+....-.++.++|++++++.++. ++.-...|..+...+-+.++++.|...|..=.+. ++..+..|..|.
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLa 726 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLA 726 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHH
Confidence 77777777777777889999999999999886 3333457888888899999999999888776654 355577788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 661 RAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 661 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
+.--+.|.+-.|..++++..-+ -+.+...|-..+.+-.+.|
T Consensus 727 kleEk~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~g-------------------------------------- 767 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLK-NPKNALLWLESIRMELRAG-------------------------------------- 767 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcC--------------------------------------
Confidence 8888889999999999998864 2446778888888888888
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHH
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~ 819 (902)
+.+.|..+..++++..|.+...|.--+....+.++-......+++. .-|+.. ..++..+....++++|.+.|+
T Consensus 768 -n~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~ 841 (913)
T KOG0495|consen 768 -NKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFE 841 (913)
T ss_pred -CHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988999999999988888887766665555553 344444 778888888999999999999
Q ss_pred HHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 048778 820 LILESGFVPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE 864 (902)
Q Consensus 820 ~~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 864 (902)
++++. .||. ++|.++...+...|.-++-.+++.+.....+...
T Consensus 842 Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG 885 (913)
T KOG0495|consen 842 RAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG 885 (913)
T ss_pred HHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence 99985 6776 8888888888999999999999999866655443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-15 Score=148.88 Aligned_cols=342 Identities=17% Similarity=0.211 Sum_probs=255.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHH-HHHHHHHHhCCCCcCHHHHHHH
Q 048778 162 YPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINA--LCKSGLVRAG-EMFFCRVLKHGFCLDTHICTSL 238 (902)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 238 (902)
+.+=|.|+.. ...|...++.-+|++|.+.|+..+...--.++.. |....++--| ++.|-.|.+.| ..+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 4455666554 4568889999999999999988887766666543 3344444333 45666676666 3333333
Q ss_pred HHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCC
Q 048778 239 VLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISL 318 (902)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 318 (902)
|.|++.+ -+|+..+ .+..||.+||.|+|+--..+.|.+++++-.....+.+..+||.+|.+-.-.
T Consensus 191 -----K~G~vAd--L~~E~~P------KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLP------KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-- 255 (625)
T ss_pred -----ccccHHH--HHHhhcC------CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--
Confidence 5565554 4454443 467899999999999999999999999999988889999999999765422
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH-HH
Q 048778 319 TDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEA----NGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIA-AF 393 (902)
Q Consensus 319 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~ 393 (902)
...++..+|......||..|+|+++.+..+.|+++.| .+++.+|++-|+.|...+|..+|..+++.++..+ |.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 2378899999999999999999999999999988765 5678889999999999999999999999887644 44
Q ss_pred HHHHHHHh----CCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCC
Q 048778 394 ELLALMEK----RTCKP----NIRTYNELMEGLCRMNKSYKAVHLLKRVVDGG----LFPD---EITYNILVDGFCREGQ 458 (902)
Q Consensus 394 ~~~~~m~~----~~~~p----~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g----~~~~---~~~~~~ll~~~~~~g~ 458 (902)
.++.++.. +.++| |..-|...+..|....+.+-|.++..-+.... +.|+ .+-|..+....|+...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 45555443 22332 45567778888889999999988877665421 2222 3456678888899999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 459 LDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCK 525 (902)
Q Consensus 459 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 525 (902)
.+.-...|+.|+-.-+-|+..+...++++..-.|.++-.-++|.++...|...+......++..+++
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 9999999999988877889999999999999999999999999999988765554444444444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-14 Score=165.80 Aligned_cols=339 Identities=9% Similarity=0.061 Sum_probs=151.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCH--hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 048778 278 LCEVGRLDEAFSLKDEMCEKGWQPST--RTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKID 355 (902)
Q Consensus 278 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (902)
..+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|+..+++..... .........+...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 45566666666666665554 2221 122 55555555566666666665555110 111222222234555556666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 356 EANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVV 435 (902)
Q Consensus 356 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 435 (902)
+|.++|+++.+.... +...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 666666666554332 3344445555555556666666655555544 3344444333333333344444555555555
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048778 436 DGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEAT 515 (902)
Q Consensus 436 ~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 515 (902)
+..+ .+...+..+...+.+.|-...|.++..+-. +.++-...... ..+.|.+.. +.+..++..-
T Consensus 197 ~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~v----r~a~~~~~~~ 260 (822)
T PRK14574 197 RLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQV----RMAVLPTRSE 260 (822)
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHH----hhcccccccc
Confidence 5421 233444445555555555555554443322 11111100000 000011110 0000000000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCh-hhH----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 516 ITALADGHCKNGKTGEALMIFERMVQN-TDLKTP-HVL----NSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTIL 589 (902)
Q Consensus 516 ~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 589 (902)
-. +---.+.|+.-++.+... +..|.. ..| .-.+-++...|++.++++.|+.+...+.+....+-..+
T Consensus 261 ----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 261 ----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 00 000123333334443331 111211 111 12234455666666666666666665544344455566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 590 VDGLFRAGNIALAMSMIEVMKLAG-----CPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFD 646 (902)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 646 (902)
.++|...+++++|..+|+.+.... .+++......|..++...+++++|..+++++.+
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 666666666666666666665432 122233345566666666666666666666654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.5e-15 Score=167.31 Aligned_cols=465 Identities=11% Similarity=0.024 Sum_probs=285.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Q 048778 313 LCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAA 392 (902)
Q Consensus 313 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 392 (902)
..+.|+++.|+..|++..+....-...++ .++..+...|+.++|+..+++.... -.........+...+...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 35677777777777777665322112233 6666666777777777777776621 111222222334456666777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 393 FELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIF 472 (902)
Q Consensus 393 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 472 (902)
+++++++.+.... +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 7777777665322 3444555566666777777777777776653 344444433333333345554577777777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 048778 473 GLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLN 552 (902)
Q Consensus 473 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 552 (902)
. +.+...+..+...+.+.|-...|.++..+-... + +...+.-+ . .+.|.+..+ ....++..-
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l-~-------~~~~a~~vr----~a~~~~~~~-- 260 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQL-E-------RDAAAEQVR----MAVLPTRSE-- 260 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHH-H-------HHHHHHHHh----hcccccccc--
Confidence 3 334556666666666666666666554432111 0 11111110 0 011111111 111011000
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH-CCCCCC-HHHH-H---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 553 SFLDVLCKENKLKEEYAMFGKILK-FGLVPS-VVTY-T---ILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIIN 626 (902)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~-~~~~-~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (902)
- .+---.+.|+.-++.+.. .+..|. ...| . -.+-++...|++.++++.|+.+...+.+.-..+-..+..
T Consensus 261 --~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 261 --T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred --h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 0 001123555666666554 222232 2222 2 234567889999999999999998876544557788999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 627 GLCQRGRFKEAEMLLFKMFDLG-----VSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSS 701 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 701 (902)
+|...++.++|+.+++.+.... .+++......|.-+|...+++++|..+++.+.+. .|- ..+ .+
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~-~~~-----~~--- 404 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPY-QVG-----VY--- 404 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCc-EEe-----cc---
Confidence 9999999999999999997532 2334555678899999999999999999999873 231 000 00
Q ss_pred CCcCCccccccccCCCCCCCCCcCCc--chhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 702 NKASGVLSISTSCHSDAGSSRLEHDD--DDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVE 779 (902)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 779 (902)
| +....+.++ +.+...+..+...|++.+|.+.++++....|.|...+..++..+...|+..+
T Consensus 405 ~----------------~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 405 G----------------LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred C----------------CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 0 000000000 1111223334445599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048778 780 ADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTV 836 (902)
Q Consensus 780 A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 836 (902)
|++.++.+.. ..|+... ...+.++...|++.+|..+.+.+.+. .|+......+
T Consensus 469 A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l 523 (822)
T PRK14574 469 AEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQEL 523 (822)
T ss_pred HHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHH
Confidence 9999988877 5677666 88888999999999999999999875 5665444344
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-14 Score=150.45 Aligned_cols=694 Identities=13% Similarity=0.063 Sum_probs=339.7
Q ss_pred HHHHhhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 048778 148 VALDGLSKDGFKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHG 227 (902)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 227 (902)
.++-.+...|..|+-+||..+|..||..|..+.|- +|.-|.-...+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35566778899999999999999999999999888 8888876666667777888887777777766555
Q ss_pred CCcCHHHHHHHHHHHhccCCHHH---HHHHHHHhhhc--------------------CCCCCCHhhHHHHHHHHHhcCCh
Q 048778 228 FCLDTHICTSLVLGHCRGNDLKE---AFKVFDVMSKE--------------------ASYRPNSVTFTTLIHGLCEVGRL 284 (902)
Q Consensus 228 ~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~--------------------~~~~~~~~~~~~li~~~~~~g~~ 284 (902)
.|...+|+.|...|...||+.. ..+.++.+... ++.-||.. ..+....-.|-+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglw 155 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLW 155 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHH
Confidence 5677788888888888877643 33322222221 01112221 222233334444
Q ss_pred hHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 048778 285 DEAFSLKDEMCEKGWQPSTRTYTVLIKALCDIS-LTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGK 363 (902)
Q Consensus 285 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 363 (902)
+.+++++..+....... ++...+.-+.... .+++-..+-....+ .|+..+|..+++.-...|+++.|..++.+
T Consensus 156 aqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 44444443332221110 0000122222111 11211111111111 35555666666665566666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH------------------
Q 048778 364 MLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSY------------------ 425 (902)
Q Consensus 364 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~------------------ 425 (902)
|.+.|++.+..-|-.|+-+ .++..-+..++..|.+.|+.|+..|+...+-.+..+|...
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrs 306 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRS 306 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHH
Confidence 6666655555544444433 4555555555555666666666655554444443322211
Q ss_pred ------HHHHHHH------------HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCCHHHHHHH
Q 048778 426 ------KAVHLLK------------RVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFG--L-VPDGFTFTSI 484 (902)
Q Consensus 426 ------~A~~~~~------------~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--~-~~~~~~~~~l 484 (902)
.|.+.++ +..-.|+......|..... ....|.-++..++...+..-- . ..++..|..+
T Consensus 307 aa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~ 385 (1088)
T KOG4318|consen 307 AACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL 385 (1088)
T ss_pred HHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHH
Confidence 1111111 1111233333333332222 222566666777666664311 1 1234455554
Q ss_pred HHHHHhcCCh-------------------hHHHHHHHHHHHCCCCCCH----------------------------HHHH
Q 048778 485 IDGLCKLGKP-------------------ELANGFFGLMVKKGISPDE----------------------------ATIT 517 (902)
Q Consensus 485 i~~~~~~g~~-------------------~~A~~~~~~~~~~~~~~~~----------------------------~~~~ 517 (902)
+.-|.+.-+. +..-.+-+.+... .||. ..-+
T Consensus 386 lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l--rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 386 LRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL--RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh--CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 4444332110 0000011111100 1111 1112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHH
Q 048778 518 ALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKF--GLVPSVVTYTILVDGLFR 595 (902)
Q Consensus 518 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~ 595 (902)
.++..++..-+..+++..-+..... .-+..|..||+.++...+.+.|..+.++.... .+..|..-+..+.+.+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~---lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDL---LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 2333333333333333222222111 11256888889999999999999888887642 234456667888888999
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 596 AGNIALAMSMIEVMKLAGC-PPN-VHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAF 673 (902)
Q Consensus 596 ~g~~~~A~~~~~~m~~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 673 (902)
.+...++..++.++.+.-. .|+ ..++-.+.+.....|+.+.-.++++-+...|+..+ .-++..+.+.++...|.
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ 616 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQ 616 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhh
Confidence 9999999999998877321 222 34556677777888888888888887777665442 22333344455555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH---------------------HHHhcCCcCCccccccc----cCCCC----CCCCCc
Q 048778 674 KIVSFMVANGCQLNSNVYSALLA---------------------GLVSSNKASGVLSISTS----CHSDA----GSSRLE 724 (902)
Q Consensus 674 ~~~~~m~~~g~~~~~~~~~~l~~---------------------~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~ 724 (902)
+..+.-.+. .+|.+.....+.. .|.+.|+...+....+. +..+. .+....
T Consensus 617 ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~ 695 (1088)
T KOG4318|consen 617 EAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIV 695 (1088)
T ss_pred hcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccc
Confidence 444443332 2222222222211 23444432222111110 00000 000000
Q ss_pred CCc---------chhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q 048778 725 HDD---------DDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG---RIVEADRIMKDIMKSGV 792 (902)
Q Consensus 725 ~~~---------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 792 (902)
+.. ....++-+.+.+.|+++.|..++.++.- .++......|+..+.+.. +..++...-+++.+ .
T Consensus 696 ~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV--~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~--~ 771 (1088)
T KOG4318|consen 696 PLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQV--SKSPMKLFHLASILRRMNEEVDVPEIQAETEKASE--L 771 (1088)
T ss_pred cHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcC--CcchHHHHHHHHHHHhhchhccchhHHHHHHHHHh--c
Confidence 000 0001222345556666666666666541 345555555655555444 23333333344433 2
Q ss_pred CchHhH-----HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchh
Q 048778 793 FPAKAI-----TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAA 867 (902)
Q Consensus 793 ~p~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ 867 (902)
.+...+ ...+...++....+.|.+.+.+..+.....+.+++...++++.+.. ..|..... .|.+.....
T Consensus 772 ~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd--~~aa~sha----~Ges~~~l~ 845 (1088)
T KOG4318|consen 772 RTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND--QLAAQSHA----SGESSKELL 845 (1088)
T ss_pred ccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC--HHHHHhcc----cccchhhhh
Confidence 222211 1112223334444566777777776544445566666767665544 22221111 133333333
Q ss_pred HHHHHHHHhcCCcHhHHHH
Q 048778 868 VLPYIEFLLTGDELGKSID 886 (902)
Q Consensus 868 ~~~l~~~~~~~g~~~~a~~ 886 (902)
-..++..+.+.-.|.+|..
T Consensus 846 tsRli~~llRrlgl~EA~~ 864 (1088)
T KOG4318|consen 846 TSRLINILLRRLGLAEALS 864 (1088)
T ss_pred hHHHHHHHHHHhhHHHHHH
Confidence 3334455556656666665
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-13 Score=135.72 Aligned_cols=445 Identities=15% Similarity=0.198 Sum_probs=297.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccC--CHH-HHHHHHHHhhhcCCCCCCHhhHHHH
Q 048778 198 IDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGN--DLK-EAFKVFDVMSKEASYRPNSVTFTTL 274 (902)
Q Consensus 198 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~-~A~~~~~~m~~~~~~~~~~~~~~~l 274 (902)
.+=|.+++. ..+|.++.+.-+|+.|...|++.+..+-..|...-|-.+ ++- .-++.|-.|.+. | ..+..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~-~-E~S~~sW--- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNF-G-EDSTSSW--- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccc-c-ccccccc---
Confidence 455666664 467899999999999999999988888877766544333 222 234566666653 2 2233344
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048778 275 IHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKI 354 (902)
Q Consensus 275 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 354 (902)
+.|.+.+ -+|+.. +-+..||.+||.++|+-...+.|.+++++-.....+.+..++|.+|.+-. +
T Consensus 191 -----K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~ 254 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----Y 254 (625)
T ss_pred -----ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----h
Confidence 4455443 233332 23778999999999999999999999999998888889999999987643 2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHH
Q 048778 355 DEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIA----AFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYK-AVH 429 (902)
Q Consensus 355 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~-A~~ 429 (902)
....++..+|......||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..
T Consensus 255 ~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 255 SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 3337899999999999999999999999999998765 56788999999999999999999999999988755 444
Q ss_pred HHHHHHh----CCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCCh
Q 048778 430 LLKRVVD----GGLFP----DEITYNILVDGFCREGQLDIALKIFNSMSIFG----LVPD---GFTFTSIIDGLCKLGKP 494 (902)
Q Consensus 430 ~~~~~~~----~g~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~ 494 (902)
++.++.. +.+.| |...|...+..|....+.+-|.++..-+.... +.|+ .+-|..+....|+....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 5555443 22332 45566777888888888888888776554321 2222 24567778888888899
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048778 495 ELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKI 574 (902)
Q Consensus 495 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (902)
+.-...|+.|.-.-+-|+..+...++.+..-.+.++-.-+++..+..-|..-+.....-++. .|
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~----------------~L 478 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILM----------------LL 478 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHH----------------HH
Confidence 99999999998887788888888888888888888888888888877654333333222222 23
Q ss_pred HHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC
Q 048778 575 LKFGLVPSVVTYTILVDGLFRA--GNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLG-VSP 651 (902)
Q Consensus 575 ~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 651 (902)
......|+...-..+-....+. .-.+.....-.+|....++| ...+...-.+.+.|+.++|.+++.-+.+.+ -.|
T Consensus 479 ~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 479 ARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred hcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 2222223222111111111111 11111122223343433333 334455555677777777777777765332 112
Q ss_pred CHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHC
Q 048778 652 NHITYS---ILVRAHASTGRLDHAFKIVSFMVAN 682 (902)
Q Consensus 652 ~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~ 682 (902)
-....+ -+++.-.+.+....|...++-|...
T Consensus 557 ~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 557 RSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 222333 4455555667777777777777654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-14 Score=141.63 Aligned_cols=278 Identities=12% Similarity=0.079 Sum_probs=193.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048778 522 GHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLC--KENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNI 599 (902)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 599 (902)
-+.+.|+++.|.++++-+.+.....-....+.|-..+. ...++-.|.++-+..+... .-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 46788888888888887766543333333333322222 2345666666666554311 01111111112233457889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 600 ALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFM 679 (902)
Q Consensus 600 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 679 (902)
++|.+.|++.+..+-.-....|| +.-.+-..|+.++|++.|-++... +..+......+.+.|-...+..+|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999888653221122232 334567788999999988887643 2456777778888888888999999988777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCC
Q 048778 680 VANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGS 759 (902)
Q Consensus 680 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 759 (902)
... ++.|+.+...|.+.|-+.| +...|.+.+-+--...|.
T Consensus 585 ~sl-ip~dp~ilskl~dlydqeg---------------------------------------dksqafq~~ydsyryfp~ 624 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEG---------------------------------------DKSQAFQCHYDSYRYFPC 624 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhccc---------------------------------------chhhhhhhhhhcccccCc
Confidence 653 5557888888888888888 788888887777777788
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048778 760 TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVI 837 (902)
Q Consensus 760 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 837 (902)
+..+...|+..|....-+++|+..|+++.- +.|+..- ..++.|+.+.|++.+|.++++....+ +.-|.++...|+
T Consensus 625 nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflv 701 (840)
T KOG2003|consen 625 NIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLV 701 (840)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHH
Confidence 999999999888888889999999988866 6787766 66677788899999999999988764 556778888888
Q ss_pred HHHHhcCC
Q 048778 838 QGLQSEGR 845 (902)
Q Consensus 838 ~~l~~~g~ 845 (902)
++....|.
T Consensus 702 ri~~dlgl 709 (840)
T KOG2003|consen 702 RIAGDLGL 709 (840)
T ss_pred HHhccccc
Confidence 87766664
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-14 Score=142.32 Aligned_cols=453 Identities=12% Similarity=0.062 Sum_probs=213.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHH
Q 048778 379 LINGYCKQGRIIAAFELLALMEKRTCKPNIRTYN-ELMEGLCRMNKSYKAVHLLKRVVDGGLFPD----EITYNILVDGF 453 (902)
Q Consensus 379 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~-~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~~ 453 (902)
|..-|..+....+|+..++-+.++...|+.-... .+-..+.+..++.+|++.++..+++-+..+ +...+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3344444555556666666665555555543221 122344455566666666666555322111 12333333445
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC------------CCHHHHHHHHH
Q 048778 454 CREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGIS------------PDEATITALAD 521 (902)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~~li~ 521 (902)
.+.|+++.|+.-|+...+. .|+..+-..|+-++..-|+-++..+.|..|+..... |+....+..|.
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 5667777777777666654 466655555555555666667666777666653222 22222222221
Q ss_pred -----HHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 522 -----GHCKNG--KTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLF 594 (902)
Q Consensus 522 -----~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 594 (902)
-.-+.. +.++++-.--+++.--+.|+-.. + .+-+.+.+..-....+..+... .-...|.
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------g------~dwcle~lk~s~~~~la~dlei--~ka~~~l 430 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------G------CDWCLESLKASQHAELAIDLEI--NKAGELL 430 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------c------cHHHHHHHHHhhhhhhhhhhhh--hHHHHHH
Confidence 111111 11111111111111111121100 0 0001111111000000000000 0122355
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-Hh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 595 RAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGL-CQ-RGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHA 672 (902)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 672 (902)
+.|+++.|+++++-+.+.+-+.-...-+.|...+ .+ ..++..|..+-+...... ..+......-.+.-...|++++|
T Consensus 431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHH
Confidence 6667777766666665543222222222222211 22 224555655555554332 23333333333344455666777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHH
Q 048778 673 FKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDR 752 (902)
Q Consensus 673 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 752 (902)
.++|++.+.. |...-.+|.. -| -++-+.|++++|++.|-+
T Consensus 510 ~~~ykeal~n----dasc~ealfn----ig--------------------------------lt~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 510 AEFYKEALNN----DASCTEALFN----IG--------------------------------LTAEALGNLDEALDCFLK 549 (840)
T ss_pred HHHHHHHHcC----chHHHHHHHH----hc--------------------------------ccHHHhcCHHHHHHHHHH
Confidence 7777666542 2211111111 11 111222366666666666
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH
Q 048778 753 IESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF 830 (902)
Q Consensus 753 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 830 (902)
+...-.++...+..+++.|....+...|++++.++.. +.|++.. ..|++.|-+.|+-.+|.+..-.-... +.-+.
T Consensus 550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~ni 626 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNI 626 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcch
Confidence 6555555666666666666666666666666666654 4444333 66666666666666666655443332 22245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHH-hcCCcHhHHHHHHHHHHh
Q 048778 831 ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFL-LTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 831 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~l~~~~~ 893 (902)
++..||+.-|....-+++|+.+++++ .-+.|+...|..++..| .+.|+|..|.++++.+..
T Consensus 627 e~iewl~ayyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 627 ETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66666666666666666666666665 33445555665544443 345666666666666544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-13 Score=144.05 Aligned_cols=672 Identities=13% Similarity=0.055 Sum_probs=344.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCC
Q 048778 184 VFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEAS 263 (902)
Q Consensus 184 ~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 263 (902)
++-.+...|+.||.+||.++|..||..|+.+.|- +|..|.-...+.+...+++++.+....|+.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4556778899999999999999999999999999 9999998888889999999999999999987765
Q ss_pred CCCCHhhHHHHHHHHHhcCChhH---HHHHHHHHHH----CCCCcCHhhHH--------------HHHHHHHhcCChHHH
Q 048778 264 YRPNSVTFTTLIHGLCEVGRLDE---AFSLKDEMCE----KGWQPSTRTYT--------------VLIKALCDISLTDKA 322 (902)
Q Consensus 264 ~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~----~g~~p~~~~~~--------------~li~~~~~~g~~~~A 322 (902)
.|...||..|..+|.+.|+... ..+.+..... .|+.-....+- ..+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 3888999999999999998754 2222222211 12211111111 111122223333444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 048778 323 LSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKR 402 (902)
Q Consensus 323 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 402 (902)
++++..+....-. . ..-.++.-... +..-.+++.......--.|+..+|..++..-..+|+++.|..++.+|.+.
T Consensus 159 lkll~~~Pvsa~~-~--p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-A--PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHhhCCccccc-c--hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 4443333211100 0 01111222221 12223333333332111489999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048778 403 TCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFT 482 (902)
Q Consensus 403 ~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 482 (902)
|++.+..-|-.|+-+ .++..-+..+++-|.+.|+.|+..|+...+..+.++|....+.....-- . ......+.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~--h--g~tAavrs 306 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA--H--GFTAAVRS 306 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh--h--hhhHHHHH
Confidence 998888888777766 7888888889999999999999999988887777755532221111000 0 00111122
Q ss_pred HHHHHHHhcCChhH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C-CChhhHHHH
Q 048778 483 SIIDGLCKLGKPEL-----ANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTD--L-KTPHVLNSF 554 (902)
Q Consensus 483 ~li~~~~~~g~~~~-----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~-~~~~~~~~l 554 (902)
.+.++.....+++. ....+.+..-.|+......|...+... ..|.-++..++-..+..-.. . .++..|..+
T Consensus 307 aa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~ 385 (1088)
T KOG4318|consen 307 AACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL 385 (1088)
T ss_pred HHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHH
Confidence 22222111111110 111111111123322333333333221 23444443333333322100 0 011112111
Q ss_pred HHHHHhc----------------------CChhHHHHHHHHH------------HH----CCCCC-------CHHHHHHH
Q 048778 555 LDVLCKE----------------------NKLKEEYAMFGKI------------LK----FGLVP-------SVVTYTIL 589 (902)
Q Consensus 555 i~~~~~~----------------------g~~~~A~~~~~~~------------~~----~~~~p-------~~~~~~~l 589 (902)
+.-|.+. ....+..++.... .. ....| -...-+.+
T Consensus 386 lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql 465 (1088)
T KOG4318|consen 386 LRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQL 465 (1088)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHH
Confidence 1111110 0111111111110 00 00000 11123445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcC
Q 048778 590 VDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFD--LGVSPNHITYSILVRAHASTG 667 (902)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~l~~~~~~~g 667 (902)
+..++..-+..+++..-+.....- -+ ..|..||+-++...+.+.|..+.++... ..+..|..-+..+.+.+.+.+
T Consensus 466 ~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~ 542 (1088)
T KOG4318|consen 466 HLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLA 542 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhH
Confidence 555555555555554333332211 11 4577777777777777777777777652 234455666777777777777
Q ss_pred CHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHH
Q 048778 668 RLDHAFKIVSFMVANG-CQLN-SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEH 745 (902)
Q Consensus 668 ~~~~A~~~~~~m~~~g-~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (902)
....+..+++++.+.- ..|+ ..+..-+++.....|+.+....++.-..+ .++.. + .....+..+.++...
T Consensus 543 ~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs----lgl~e---t-gPl~~vhLrkdd~s~ 614 (1088)
T KOG4318|consen 543 ILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS----LGLSE---T-GPLWMVHLRKDDQSA 614 (1088)
T ss_pred HHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH----hhhhh---c-ccceEEEeeccchhh
Confidence 7777777777776531 1121 22233333343444422211111000000 00000 0 001111222234444
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHH---------------------HHHhcCCHHHHHHHHHHH-----------HHcC-C
Q 048778 746 AFRLRDRIESCGGSTTDFYNFLVV---------------------ELCRAGRIVEADRIMKDI-----------MKSG-V 792 (902)
Q Consensus 746 A~~~~~~~~~~~~~~~~~~~~l~~---------------------~~~~~g~~~~A~~~~~~~-----------~~~~-~ 792 (902)
|.+.++...+...+.+.....+.+ .|.+.|++.+|-.+.+.= .+.| +
T Consensus 615 a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~ 694 (1088)
T KOG4318|consen 615 AQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEI 694 (1088)
T ss_pred hhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCcc
Confidence 444443333333222222222222 244555555554443321 0000 1
Q ss_pred Cc---------hHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhC
Q 048778 793 FP---------AKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGR---NKQAKNLVSDLFRY 859 (902)
Q Consensus 793 ~p---------~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~---~~~A~~~~~~~~~~ 859 (902)
.| +... ..|+..|...|+++.|..+|.++. +.|.......++.++.+... ..++....+++.+.
T Consensus 695 ~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~ 771 (1088)
T KOG4318|consen 695 VPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASEL 771 (1088)
T ss_pred ccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhc
Confidence 11 1111 567778999999999999999886 57888888888888865443 44555555555444
Q ss_pred CCCCcchhHHHHHHH-HhcCCcHh-HHHHHHHHHHhcC
Q 048778 860 NGIEEKAAVLPYIEF-LLTGDELG-KSIDLLNLIDQVH 895 (902)
Q Consensus 860 ~~~~~~~~~~~l~~~-~~~~g~~~-~a~~~l~~~~~~~ 895 (902)
.......+...-..+ ....++.. -|.+.+++.....
T Consensus 772 ~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~ 809 (1088)
T KOG4318|consen 772 RTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQL 809 (1088)
T ss_pred ccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHcc
Confidence 333222222222222 23345544 6888888887763
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-10 Score=114.64 Aligned_cols=441 Identities=10% Similarity=0.080 Sum_probs=264.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCH-hhHHHHHHHHHhcCChhH
Q 048778 208 CKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNS-VTFTTLIHGLCEVGRLDE 286 (902)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~ 286 (902)
..++++..|+.+|+.++..+ ..+...|-..+.+-.++..+..|..++++... - -|-+ ..|---+..=-..|++..
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~-lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--I-LPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--h-cchHHHHHHHHHHHHHHhcccHH
Confidence 34455555555665555443 34444555555555555555555555555553 1 2222 233333333334455555
Q ss_pred HHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 048778 287 AFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQ 366 (902)
Q Consensus 287 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 366 (902)
|.++|++..+ +.|+...|++.|+.=.+-+.++.|..+++...-. .|++.+|-.....=.+.|.+..|..+|+...+
T Consensus 160 aRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 160 ARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555443 3455555555555555555555555555554432 34555555444444455555555555544443
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhh
Q 048778 367 DGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPD-EIT 445 (902)
Q Consensus 367 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~ 445 (902)
. + -|... +...+.+....-.+...++.|.-++.-.++.-+... ...
T Consensus 236 ~-~-~~d~~-------------------------------~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL 282 (677)
T KOG1915|consen 236 F-L-GDDEE-------------------------------AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEEL 282 (677)
T ss_pred H-h-hhHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 1 0 01110 112222223333334455556666655555321111 223
Q ss_pred HHHHHHHHHhcCCHHHHHH--------HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HH
Q 048778 446 YNILVDGFCREGQLDIALK--------IFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDE--AT 515 (902)
Q Consensus 446 ~~~ll~~~~~~g~~~~A~~--------~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 515 (902)
|..+...--+-|+.....+ -++.+++.+ +-|-.+|-..++.-...|+.+...++|+..+.. ++|-. ..
T Consensus 283 ~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~ 360 (677)
T KOG1915|consen 283 YKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRY 360 (677)
T ss_pred HHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHH
Confidence 3333332223344332222 133444443 457777877888777888888888888888765 33321 11
Q ss_pred HHHHHH-----H---HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH----HhcCChhHHHHHHHHHHHCCCCCCH
Q 048778 516 ITALAD-----G---HCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVL----CKENKLKEEYAMFGKILKFGLVPSV 583 (902)
Q Consensus 516 ~~~li~-----~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~p~~ 583 (902)
|...|- + -....+++.+.++++..++. ++....|+..+--.| .++.++..|.+++...+ |..|..
T Consensus 361 W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~ 437 (677)
T KOG1915|consen 361 WRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKD 437 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCch
Confidence 222111 1 12467888899999988883 555566666654444 46789999999999887 577899
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 048778 584 VTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLG-VSPNHITYSILVRA 662 (902)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~ 662 (902)
.++...|..-.+.++++.+..+|++.++.+ +-|..+|......-...|+.+.|..+|+-.++.. +......|.+.|+.
T Consensus 438 KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdF 516 (677)
T KOG1915|consen 438 KLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDF 516 (677)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhh
Confidence 999999999999999999999999999975 6678899888888888999999999999988642 22345677788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 663 HASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAG 697 (902)
Q Consensus 663 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 697 (902)
-...|.++.|..+++++++. .+...+|-++...
T Consensus 517 Ei~~~E~ekaR~LYerlL~r--t~h~kvWisFA~f 549 (677)
T KOG1915|consen 517 EIEEGEFEKARALYERLLDR--TQHVKVWISFAKF 549 (677)
T ss_pred hhhcchHHHHHHHHHHHHHh--cccchHHHhHHHH
Confidence 88999999999999999974 5555677766543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-10 Score=115.23 Aligned_cols=455 Identities=11% Similarity=0.100 Sum_probs=265.3
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048778 351 EGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHL 430 (902)
Q Consensus 351 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~ 430 (902)
.+++..|..+|++.+... ..+...|-..+.+=.++..+..|..+++.....-...| ..|-..+..--..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHH
Confidence 344444455555444432 12344444444444444555555555544443311111 1122222222334555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048778 431 LKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGIS 510 (902)
Q Consensus 431 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 510 (902)
|++..+ ..|+...|.+.++.-.+-..++.|..+++..+-. .|++.+|--....=-+.|+...|..+|....+. -
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~ 237 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF--L 237 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--h
Confidence 555443 2355555555555555555555555555554432 355555555444444555555555555444432 0
Q ss_pred CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCC---hhHHHH-----HHHHHHHC
Q 048778 511 PDE----ATITALADGHCKNGKTGEALMIFERMVQNTDLKT-PHVLNSFLDVLCKENK---LKEEYA-----MFGKILKF 577 (902)
Q Consensus 511 ~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~-----~~~~~~~~ 577 (902)
.|. ..+.+....-..+..++.|.-+|+-.+.+-.... ...|..+...--+-|+ +++++. -++.+.+.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 111 1222222222234445555555555554311111 1222222222222232 222221 23333333
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--H-----HHHHHHHH---HhcCCHHHHHHHHHHHHHC
Q 048778 578 GLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVH--T-----YTVIINGL---CQRGRFKEAEMLLFKMFDL 647 (902)
Q Consensus 578 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~-----~~~li~~~---~~~g~~~~A~~~~~~m~~~ 647 (902)
-+.|..+|--.++.--..|+.+...++|++++.. ++|-.. . |.-+=.+| ....+.+.+.++++..++.
T Consensus 318 -np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 -NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred -CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 2457778888888888889999999999999875 566331 2 22221222 3467899999999999884
Q ss_pred CCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCC
Q 048778 648 GVSPNHITYSILVRA----HASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRL 723 (902)
Q Consensus 648 g~~p~~~~~~~l~~~----~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (902)
++-...||..+--. -.++.++..|.+++..++ |..|...++...|..-.+.+
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~--------------------- 451 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLR--------------------- 451 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHh---------------------
Confidence 45556666554433 357789999999999988 77898888888887777777
Q ss_pred cCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-hHhH-HHH
Q 048778 724 EHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFP-AKAI-TSI 801 (902)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~-~~l 801 (902)
+++....+|++.++-+|.+..+|...+..=...|+.+.|..+|.-++...... .... ...
T Consensus 452 ------------------efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaY 513 (677)
T KOG1915|consen 452 ------------------EFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAY 513 (677)
T ss_pred ------------------hHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998643211 1111 555
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHhC
Q 048778 802 IGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQ-----SEG-----------RNKQAKNLVSDLFRY 859 (902)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~-----~~g-----------~~~~A~~~~~~~~~~ 859 (902)
++.=...|.+++|..+++++++. .+-..+|...+..-. ..| ....|..+|+++...
T Consensus 514 IdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 514 IDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred hhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 55566899999999999999975 344445555443222 344 567788888887533
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.4e-11 Score=118.16 Aligned_cols=290 Identities=11% Similarity=0.062 Sum_probs=170.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCH
Q 048778 522 GHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGL--VPSVVTYTILVDGLFRAGNI 599 (902)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~ 599 (902)
++......+++..-.+.....|.+.+...-+....+.....++++|+.+|+++.+... .-|..+|.-++ |.+..+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH
Confidence 4444445566666666666655555555445455555556666666666666665311 11445555444 2232221
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 600 ALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFM 679 (902)
Q Consensus 600 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 679 (902)
. +.++.+-...--+--..|..++.+-|.-.++.+.|..+|+..++.+ +-....|+.++.-|....+...|++-++++
T Consensus 314 k--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 K--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred H--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1 1111111110001122344455566666667777777777777654 334566677777777777777777777777
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCC
Q 048778 680 VANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGG 758 (902)
Q Consensus 680 ~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 758 (902)
++ +.| |...|-.|..+|...+ -..=|+-.|+++.+..|
T Consensus 391 vd--i~p~DyRAWYGLGQaYeim~---------------------------------------Mh~YaLyYfqkA~~~kP 429 (559)
T KOG1155|consen 391 VD--INPRDYRAWYGLGQAYEIMK---------------------------------------MHFYALYYFQKALELKP 429 (559)
T ss_pred Hh--cCchhHHHHhhhhHHHHHhc---------------------------------------chHHHHHHHHHHHhcCC
Confidence 75 344 6667777777776666 55666677777777777
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHc----C-CCC-CHHH
Q 048778 759 STTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILES----G-FVP-SFES 832 (902)
Q Consensus 759 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p-~~~~ 832 (902)
.|+..|.+|+.+|.+.++.++|+..|+.+...|-....+...|+..|.+.++.++|..++++-++. | +.| ...+
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka 509 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKA 509 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 777777777777777777777777777777644322222267777777777777777777766542 2 223 2244
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 833 HCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 833 ~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
..+|+.-+.+.+++++|..+..+.+
T Consensus 510 ~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 510 RLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHh
Confidence 4556666667777777776666543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-12 Score=128.67 Aligned_cols=291 Identities=10% Similarity=0.056 Sum_probs=223.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcC
Q 048778 555 LDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGC--PPNVHTYTVIINGLCQRG 632 (902)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g 632 (902)
..++....+.+++..-.......|++-+...-+....+.....++++|+.+|+++.+... -.|..+|..++- .+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhh
Confidence 345555567888888888888888776666666666667788999999999999998631 125677877763 3333
Q ss_pred CHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCCcccc
Q 048778 633 RFKEAEMLLFK-MFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN-SNVYSALLAGLVSSNKASGVLSI 710 (902)
Q Consensus 633 ~~~~A~~~~~~-m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~~~~~ 710 (902)
+-. +.++.+ ....+ +--+.|...+.+-|.-.++.++|..+|++.++ +.|. ...|+.+..-|....
T Consensus 312 ~sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmK-------- 378 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMK-------- 378 (559)
T ss_pred hHH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhc--------
Confidence 222 222222 21211 34456777888888888999999999999997 5664 467777777888888
Q ss_pred ccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 711 STSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
+...|++.|+.+++.+|.|-.+|..|+.+|.-.+...=|+-.|+++..
T Consensus 379 -------------------------------Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~- 426 (559)
T KOG1155|consen 379 -------------------------------NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE- 426 (559)
T ss_pred -------------------------------ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh-
Confidence 999999999999999999999999999999999999999999999998
Q ss_pred CCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCC
Q 048778 791 GVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRY----N-GIE 863 (902)
Q Consensus 791 ~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~----~-~~~ 863 (902)
++|++.- ..|+.+|.+.++.++|++-++++...| +.+...+..++..|.+.++.++|..++++.++. + ..|
T Consensus 427 -~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~ 504 (559)
T KOG1155|consen 427 -LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD 504 (559)
T ss_pred -cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch
Confidence 7787665 999999999999999999999999876 445678899999999999999999999997753 2 233
Q ss_pred cch-hHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 864 EKA-AVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 864 ~~~-~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
... ...-|...+.+.+++++|........+.
T Consensus 505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 505 ETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 211 1122556677889998888766555443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-12 Score=131.24 Aligned_cols=222 Identities=12% Similarity=0.063 Sum_probs=177.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 593 LFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHA 672 (902)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 672 (902)
+.-.|+.-.|..-|+..++.... +...|.-+..+|....+.++..+.|.+..+.+ +-|..+|..-...+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 44578889999999999886533 33337777888999999999999999999876 56788888888888888999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHH
Q 048778 673 FKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRD 751 (902)
Q Consensus 673 ~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 751 (902)
..-|++.+. +.| +...|--+.-+..+.+ +++++...|+
T Consensus 414 ~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~---------------------------------------k~~~~m~~Fe 452 (606)
T KOG0547|consen 414 IADFQKAIS--LDPENAYAYIQLCCALYRQH---------------------------------------KIAESMKTFE 452 (606)
T ss_pred HHHHHHHhh--cChhhhHHHHHHHHHHHHHH---------------------------------------HHHHHHHHHH
Confidence 999999986 566 3445555555555666 9999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch------HhH---HHHHHHHHccCChHHHHHHHHHHH
Q 048778 752 RIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA------KAI---TSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 752 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~---~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
+.+++.|.-+..|+..+..+...+++++|++.|+.+++ +.|. .+. ..-+-.+.-.+++.+|..+++++.
T Consensus 453 e~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~ 530 (606)
T KOG0547|consen 453 EAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAI 530 (606)
T ss_pred HHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 4455 111 111112223489999999999998
Q ss_pred HcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 823 ESGFVPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 823 ~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
+. +|.. ..|..++.....+|+.++|+++|++.....-
T Consensus 531 e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 531 EL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred cc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 84 6754 7888999999999999999999999765543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-12 Score=130.89 Aligned_cols=220 Identities=16% Similarity=0.091 Sum_probs=173.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCc
Q 048778 629 CQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGV 707 (902)
Q Consensus 629 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~ 707 (902)
.-.|+.-.|..-|+..++..-. +...|..+...|....+.++..+.|.+..+ +.| ++.+|..-...+.-.+
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~----- 408 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQ----- 408 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHH-----
Confidence 3468888999999999886522 333388888889999999999999999986 444 4555555554444444
Q ss_pred cccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 708 LSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDI 787 (902)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 787 (902)
++++|..-|++.+.++|.+...|..++.+..+.++++++...|+..
T Consensus 409 ----------------------------------q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~ 454 (606)
T KOG0547|consen 409 ----------------------------------QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA 454 (606)
T ss_pred ----------------------------------HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred HHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHH-HHHhcCCHHHHHHHHHHHHhC
Q 048778 788 MKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPS-------FESHCTVIQ-GLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 788 ~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~-~l~~~g~~~~A~~~~~~~~~~ 859 (902)
.++-+.-.++.+..+..+..++++++|.+.++.+++. .|+ +..+..-+- .+.-.+++.+|+.+++++++.
T Consensus 455 kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 455 KKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred HHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc
Confidence 9865443444488899999999999999999999863 343 222222111 222348999999999999888
Q ss_pred CCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 860 NGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 860 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
++.- ...+..++...+..|+.++|+++|++-..
T Consensus 533 Dpkc-e~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 533 DPKC-EQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred CchH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7653 44677889999999999999999997654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.3e-14 Score=146.31 Aligned_cols=286 Identities=14% Similarity=0.116 Sum_probs=195.2
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048778 528 KTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFG--LVPSVVTYTILVDGLFRAGNIALAMSM 605 (902)
Q Consensus 528 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~ 605 (902)
+..+|...|.....+ +.........+..+|...+++++|..+|+.+.+.. ..-+..+|.+.+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456788888774443 33444666777788888888888888888877531 122566777666543321 22222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048778 606 I-EVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGC 684 (902)
Q Consensus 606 ~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 684 (902)
+ +++.+.. +-...+|-++.++|.-+++++.|++.|++.+..+ +-...+|+.+..-+.....+|.|...|+..+. +
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~ 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG--V 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc--C
Confidence 2 2333322 4455778888888888888888888888877643 22567777777777777788888888877763 3
Q ss_pred CC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHH
Q 048778 685 QL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDF 763 (902)
Q Consensus 685 ~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 763 (902)
.| +...|..+...|.+++ +++.|.-.|+++++.+|.+.+.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqe---------------------------------------k~e~Ae~~fqkA~~INP~nsvi 525 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQE---------------------------------------KLEFAEFHFQKAVEINPSNSVI 525 (638)
T ss_pred CchhhHHHHhhhhheeccc---------------------------------------hhhHHHHHHHhhhcCCccchhH
Confidence 44 2334445555666666 7888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 048778 764 YNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF-ESHCTVIQGL 840 (902)
Q Consensus 764 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~l 840 (902)
...++..+.+.|+.++|+.+++++.. +.|.+.. ...+..+...+++++|+..++++.+. .|+. ..+..++.+|
T Consensus 526 ~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 526 LCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIY 601 (638)
T ss_pred HhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence 88888888888888888888888877 4455544 67777777778888888888888763 5653 6667777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcc
Q 048778 841 QSEGRNKQAKNLVSDLFRYNGIEEK 865 (902)
Q Consensus 841 ~~~g~~~~A~~~~~~~~~~~~~~~~ 865 (902)
.+.|+.+.|+.-|.-|+..++....
T Consensus 602 k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 602 KRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHccchHHHHhhHHHhcCCCccch
Confidence 8888888888777777666554443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=154.46 Aligned_cols=256 Identities=15% Similarity=0.179 Sum_probs=68.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 590 VDGLFRAGNIALAMSMIEVMKLAGCPP-NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGR 668 (902)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 668 (902)
...+.+.|++++|++++++.....-+| |...|..+.......+++++|...++++...+ +-+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 444455555555555554333221112 22233333334444555555555555555433 1233344444444 45555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHH
Q 048778 669 LDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFR 748 (902)
Q Consensus 669 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 748 (902)
+++|.+++.+..+. .++...+...+..+...+ +++++.+
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~---------------------------------------~~~~~~~ 131 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLG---------------------------------------DYDEAEE 131 (280)
T ss_dssp ---------------------------H-HHHTT----------------------------------------HHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHh---------------------------------------HHHHHHH
Confidence 55555555544432 233333444444444444 5555555
Q ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHc
Q 048778 749 LRDRIESCG--GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 749 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
+++++.+.. +.++..|..++..+.+.|+.++|++.++++++ ..|++.. ..+++.+...|+.+++..+++...+.
T Consensus 132 ~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 132 LLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp HHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 555554433 44555555555555666666666666666655 3343322 55555555566665555555555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHH
Q 048778 825 GFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLID 892 (902)
Q Consensus 825 ~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 892 (902)
. ..++..+..++.++...|+.++|+.+++++.+..+ .|......+.+++...|+.++|.++++++.
T Consensus 210 ~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 210 A-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp --HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHT----------------
T ss_pred C-cCHHHHHHHHHHHhccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 1 22334445555555566666666666666544332 234444455555666666666665555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-12 Score=140.86 Aligned_cols=288 Identities=9% Similarity=0.067 Sum_probs=177.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048778 525 KNGKTGEALMIFERMVQNTDLKTPH-VLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAM 603 (902)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 603 (902)
..|+++.|.+.+.+..+.. |++. .+-.........|++++|...+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4677777777776665532 3322 223334556666777777777777665321222223333466667777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHHHHH
Q 048778 604 SMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYS-ILVR---AHASTGRLDHAFKIVSFM 679 (902)
Q Consensus 604 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~---~~~~~g~~~~A~~~~~~m 679 (902)
..++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+.. +...+. .-.. .+...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777777764 445566777777777777777777777777776533 332221 1111 112223333333444444
Q ss_pred HHCC---CCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc
Q 048778 680 VANG---CQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC 756 (902)
Q Consensus 680 ~~~g---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 756 (902)
.+.. .+.+...+..+...+...| +.++|.+.+++.++.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g---------------------------------------~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCD---------------------------------------DHDSAQEIIFDGLKK 292 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCC---------------------------------------ChHHHHHHHHHHHhh
Confidence 4321 1125666667777777777 888888888888887
Q ss_pred CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh--H--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH
Q 048778 757 GGSTTDFY--NFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA--I--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF 830 (902)
Q Consensus 757 ~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 830 (902)
.|++.... ..........++.+.+++.+++..+ ..|++. . ..+++.|.+.|++++|.++|++.......|+.
T Consensus 293 ~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 293 LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence 76665322 1222223345677778888877777 345555 4 78888888888888888888853333346777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 831 ESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 831 ~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
+.+.+++..+.+.|+.++|.+++++.+
T Consensus 371 ~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 371 NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777788888888888888888888754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4e-11 Score=123.31 Aligned_cols=283 Identities=12% Similarity=0.065 Sum_probs=222.5
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 545 LKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVI 624 (902)
Q Consensus 545 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 624 (902)
..++.......+-+...+++.+..++++...+. .++....+..-|.++...|+..+-..+-.++++. .|-...+|.++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 345566667777888899999999999998874 3456666666777888999988888888888876 46677899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 048778 625 INGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKA 704 (902)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 704 (902)
..-|.-.|+..+|.+.|.+....+ +.=...|..++..|.-.|.-++|+..+..+.+. ++-...-+--+.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~-- 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTN-- 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhc--
Confidence 998988999999999999987643 223578999999999999999999999888763 1111112222333455566
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIM 784 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 784 (902)
+++.|.+.|..+....|.|+..++-++-...+.+.+.+|...|
T Consensus 395 -------------------------------------n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 395 -------------------------------------NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred -------------------------------------cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999
Q ss_pred HHHHHc--CCCc----hHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 785 KDIMKS--GVFP----AKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 785 ~~~~~~--~~~p----~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
+..+.. .+.+ -..+ +.|+.+|.+.+++++|+..+++.+... +.+..++..++.+|...|+++.|++.|.+++
T Consensus 438 ~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 438 QKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 998721 0111 1223 899999999999999999999999752 4477899999999999999999999999974
Q ss_pred hCCCCCcchhHHHHHH
Q 048778 858 RYNGIEEKAAVLPYIE 873 (902)
Q Consensus 858 ~~~~~~~~~~~~~l~~ 873 (902)
...|+...-..++.
T Consensus 517 --~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 517 --ALKPDNIFISELLK 530 (611)
T ss_pred --hcCCccHHHHHHHH
Confidence 44566544444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-13 Score=143.11 Aligned_cols=285 Identities=11% Similarity=0.059 Sum_probs=206.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048778 563 KLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAG--CPPNVHTYTVIINGLCQRGRFKEAEML 640 (902)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~ 640 (902)
+..+|...|....+. +.-+..+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+--+- +.-+---+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHHHHH
Confidence 456788888874443 33344566677888888888888888888887642 1124556666654332 22222223
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCC
Q 048778 641 LFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAG 719 (902)
Q Consensus 641 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (902)
-+++++.. +..+.+|.+++++|.-+++.+.|++.|+++++ +.| ...+|+.+..-+....
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~e----------------- 469 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATE----------------- 469 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhH-----------------
Confidence 34444443 55678888888888888888888888888886 566 5567777776666666
Q ss_pred CCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-
Q 048778 720 SSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI- 798 (902)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~- 798 (902)
.+|.|...|+.++..+|.+..+|..|+..|.+.++++.|+-.|+++++ +.|....
T Consensus 470 ----------------------e~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi 525 (638)
T KOG1126|consen 470 ----------------------EFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVI 525 (638)
T ss_pred ----------------------HHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhH
Confidence 888888888888888888888888888888888888888888888888 6676555
Q ss_pred -HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHh
Q 048778 799 -TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLL 876 (902)
Q Consensus 799 -~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (902)
..++..+-+.|+.++|+++++++... +| ++..-...+.++...|++++|+..++++.+.-+. +..++..++..|.
T Consensus 526 ~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k 602 (638)
T KOG1126|consen 526 LCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYK 602 (638)
T ss_pred HhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHH
Confidence 77788888888888888888888763 34 4555566777888888888888888887555432 3445667777888
Q ss_pred cCCcHhHHHHHHHHHHhcCccc
Q 048778 877 TGDELGKSIDLLNLIDQVHYRQ 898 (902)
Q Consensus 877 ~~g~~~~a~~~l~~~~~~~~~~ 898 (902)
+.|+.+.|+..+--+.+-..+-
T Consensus 603 ~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 603 RLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHccchHHHHhhHHHhcCCCcc
Confidence 8888888888888777665543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.4e-15 Score=150.99 Aligned_cols=261 Identities=17% Similarity=0.163 Sum_probs=108.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 553 SFLDVLCKENKLKEEYAMFGKILKFG-LVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQR 631 (902)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 631 (902)
.+...+.+.|++++|++++++..... .+.|...|..+.......++.+.|.+.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44667777888888888886544433 23345556666667777888999999999988765 2245566666666 688
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCcCCcccc
Q 048778 632 GRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANG-CQLNSNVYSALLAGLVSSNKASGVLSI 710 (902)
Q Consensus 632 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~~~~~~~~~~ 710 (902)
+++++|.++++...+. .++...+..++..+.+.|+++++.++++.+.+.. .+.+...|..+...+.+.|
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G-------- 160 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG-------- 160 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC--------
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC--------
Confidence 8999999988877654 3566777788888889999999999999877532 3456777888888888888
Q ss_pred ccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 711 STSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
+.++|.+.++++++.+|.|+.....+++.+...|+.+++.++++...+.
T Consensus 161 -------------------------------~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 161 -------------------------------DPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp -------------------------------HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888888774
Q ss_pred CCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 791 GVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 791 ~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
. ..+... ..++.+|...|+.++|+.++++..+.+ ..|+.....+++++...|+.++|..+.+++.+
T Consensus 210 ~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 210 A-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp --HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred C-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 3 223344 889999999999999999999988752 33678888899999999999999999888643
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-12 Score=136.80 Aligned_cols=284 Identities=11% Similarity=0.016 Sum_probs=204.5
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 048778 561 ENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYT--VIINGLCQRGRFKEAE 638 (902)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~ 638 (902)
.|++++|.+.+....+..-. ....|........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 57777777776665443111 1223333344457888888888888888774 45543322 3356778888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCcCCccccc
Q 048778 639 MLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSN-------VYSALLAGLVSSNKASGVLSIS 711 (902)
Q Consensus 639 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~ 711 (902)
..++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++.. .|..++.......
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~--------- 243 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ--------- 243 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 9998888765 5567788888888889999999999999888765443221 1222222222222
Q ss_pred cccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 712 TSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
+.+...+.++.+....|.++.....++..+...|+.++|.+++++.++..
T Consensus 244 ------------------------------~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~ 293 (398)
T PRK10747 244 ------------------------------GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ 293 (398)
T ss_pred ------------------------------CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 55666666666666568889999999999999999999999999998843
Q ss_pred CCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHH
Q 048778 792 VFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLP 870 (902)
Q Consensus 792 ~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 870 (902)
|+.. ..++.+....++.+++++..++..+. .| |+..+..++..+.+.|++++|.+.++++++. .|+...+..
T Consensus 294 --~~~~-l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~ 366 (398)
T PRK10747 294 --YDER-LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAW 366 (398)
T ss_pred --CCHH-HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHH
Confidence 3332 23444455669999999999999875 45 4577888999999999999999999998665 466666677
Q ss_pred HHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 871 YIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 871 l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
+...+.+.|+.++|.+++++-...
T Consensus 367 La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 367 LADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888899999999999999876543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.5e-12 Score=136.36 Aligned_cols=286 Identities=10% Similarity=-0.025 Sum_probs=216.4
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 048778 559 CKENKLKEEYAMFGKILKFGLVPS-VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNV--HTYTVIINGLCQRGRFK 635 (902)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 635 (902)
...|+++.|.+.+.+..+. .|+ ...+-....++.+.|+++.|.+.+.++.+. .|+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 4579999999999988774 344 344555577788999999999999998875 3443 34444578888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCcCCcccccc
Q 048778 636 EAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGL---VSSNKASGVLSIST 712 (902)
Q Consensus 636 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~ 712 (902)
.|...++.+.+.. +-+...+..+...+.+.|++++|.+.+..+.+.+..+.......-...+ ...+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~---------- 239 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA---------- 239 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH----------
Confidence 9999999999875 5577889999999999999999999999999876443222211111111 2222
Q ss_pred ccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 713 SCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGG----STTDFYNFLVVELCRAGRIVEADRIMKDIM 788 (902)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (902)
..+++.+.+..+.+..| .++..+..++..+...|++++|.+++++.+
T Consensus 240 -----------------------------~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 240 -----------------------------MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred -----------------------------HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 33334445555555544 689999999999999999999999999999
Q ss_pred HcCCCchHhH----HHHHHHHHccCChHHHHHHHHHHHHcCCCCC-H--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 789 KSGVFPAKAI----TSIIGCYCKERKYDDCLEFMNLILESGFVPS-F--ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 789 ~~~~~p~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~--~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
+.. |+... ..........++.+.+.+.+++..+. .|+ + .....+++.+.+.|++++|.++++++.....
T Consensus 291 ~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 291 KKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred hhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 854 55442 12222234567889999999999875 454 4 5667899999999999999999996545555
Q ss_pred CCcchhHHHHHHHHhcCCcHhHHHHHHHHHH
Q 048778 862 IEEKAAVLPYIEFLLTGDELGKSIDLLNLID 892 (902)
Q Consensus 862 ~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 892 (902)
.|+...+.+++..+.+.|+.++|.+++++-.
T Consensus 367 ~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 367 QLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777777899999999999999999999754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-08 Score=103.10 Aligned_cols=566 Identities=11% Similarity=0.101 Sum_probs=286.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH
Q 048778 233 HICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKA 312 (902)
Q Consensus 233 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 312 (902)
.+|-..+..+.+.|++...+..|++......+......|...+.-.-..|-++-++.++++..+. ++..-.-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 34555566666677777777777766553222233345666666666666666777777666553 33345556666
Q ss_pred HHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHh---HHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 048778 313 LCDISLTDKALSLFDEMVVKR------CKPNAHTYTVLIDRLCREGKID---EANGMCGKMLQDGHFPG--VVTYNVLIN 381 (902)
Q Consensus 313 ~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~--~~~~~~li~ 381 (902)
+++.+++++|.+.+...+... .+.+...|..+.+...+.-+.- ...+++..+..+ -+| ...|++|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 666677777666666555321 1223344444444444332221 122223333221 122 234556666
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhcCCHH
Q 048778 382 GYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVV-DGGLFPDEITYNILVDGFCREGQLD 460 (902)
Q Consensus 382 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~g~~~ 460 (902)
-|.+.|.+++|..++++.... ...+.-|..+.+.|.......-+..+= -.. +.+-.-+.. +++
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~ 320 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLE 320 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHH
Confidence 666666666666666555443 123333444444443322111111100 000 000000111 111
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 461 IALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMV 540 (902)
Q Consensus 461 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 540 (902)
-.+.-|+.+...+. .+++...-+.-+.+...|..-+.. ..|+..+-...+.+..
T Consensus 321 ~~~a~~e~lm~rr~------------------------~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv 374 (835)
T KOG2047|consen 321 LHMARFESLMNRRP------------------------LLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAV 374 (835)
T ss_pred HHHHHHHHHHhccc------------------------hHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHH
Confidence 22222222222110 000000000011233333332222 2333444444444443
Q ss_pred hCCCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048778 541 QNTDLK------TPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPS---VVTYTILVDGLFRAGNIALAMSMIEVMKL 611 (902)
Q Consensus 541 ~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (902)
+. +.| -...|..+...|-..|+++.|..+|++..+...+-- ..+|......-.++.+++.|+++.+....
T Consensus 375 ~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 375 KT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred Hc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 32 111 011244444555555555555555555544322211 22333333444444555555555544432
Q ss_pred CC-----------C------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 612 AG-----------C------PPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFK 674 (902)
Q Consensus 612 ~~-----------~------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 674 (902)
.. . ..+...|...++..-..|-++....+++.+++..+. ++.........+-...-++++.+
T Consensus 454 vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk 532 (835)
T KOG2047|consen 454 VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFK 532 (835)
T ss_pred CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHH
Confidence 10 0 113345666666666778888889999999987643 33333344444556677899999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHH
Q 048778 675 IVSFMVANGCQLN-SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRI 753 (902)
Q Consensus 675 ~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 753 (902)
.|++-+..=-.|+ ...|+..+.-+.+.- .+ ...+.|..+|+++
T Consensus 533 ~YErgI~LFk~p~v~diW~tYLtkfi~ry--gg----------------------------------~klEraRdLFEqa 576 (835)
T KOG2047|consen 533 AYERGISLFKWPNVYDIWNTYLTKFIKRY--GG----------------------------------TKLERARDLFEQA 576 (835)
T ss_pred HHHcCCccCCCccHHHHHHHHHHHHHHHh--cC----------------------------------CCHHHHHHHHHHH
Confidence 9988765422344 357777776665532 00 1899999999999
Q ss_pred HhcCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccC----ChHHHHHHHHHHHHcCCC
Q 048778 754 ESCGGSTTDFYN--FLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKER----KYDDCLEFMNLILESGFV 827 (902)
Q Consensus 754 ~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~ 827 (902)
++.-||.-.-+. ..+..=.+.|-...|+.+|+++... +.+..- ..+-+.|.+.- -+..-..+++++++. -
T Consensus 577 L~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~-l~myni~I~kaae~yGv~~TR~iYekaIe~--L 652 (835)
T KOG2047|consen 577 LDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQR-LDMYNIYIKKAAEIYGVPRTREIYEKAIES--L 652 (835)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHH-HHHHHHHHHHHHHHhCCcccHHHHHHHHHh--C
Confidence 995565543333 3333445668889999999998653 444332 33333333211 123345667777764 5
Q ss_pred CCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCcchhHHHHHHHHhcCCcHhHHHHHH
Q 048778 828 PSFE---SHCTVIQGLQSEGRNKQAKNLVSDLFRY-NGIEEKAAVLPYIEFLLTGDELGKSIDLL 888 (902)
Q Consensus 828 p~~~---~~~~l~~~l~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~l 888 (902)
|+.. .....++.=.+.|+.+.|..+|....+. ++.-+...|...-..=.+.|+-+-..++|
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6543 2334455667889999999999886544 55566778888887788889844433333
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-09 Score=112.98 Aligned_cols=486 Identities=14% Similarity=0.086 Sum_probs=302.9
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 351 EGKIDEANGMCGKMLQDGHFPGVVTYNVLING---YCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKA 427 (902)
Q Consensus 351 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A 427 (902)
.+..+++..-+.....++...+..++..+-.+ |+..++.+++ +|-...+.-..|....+.+.+.-
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilsl---------- 307 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSL---------- 307 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHH----------
Confidence 44555666666666655555555555554432 3345555555 22222222222221111111110
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048778 428 VHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKK 507 (902)
Q Consensus 428 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 507 (902)
+-.+.++....+..|...|..+.-+....|+++.+.+.|++....- .-....|+.+...|...|.-..|..+++.-...
T Consensus 308 m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 308 MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 1123333334455678888888888999999999999999987643 345678888888999999999999999887765
Q ss_pred CCCCCHHHHHHHHH-HH-HhcCCHHHHHHHHHHHHhC--CC--CCChhhHHHHHHHHHhc-----------CChhHHHHH
Q 048778 508 GISPDEATITALAD-GH-CKNGKTGEALMIFERMVQN--TD--LKTPHVLNSFLDVLCKE-----------NKLKEEYAM 570 (902)
Q Consensus 508 ~~~~~~~~~~~li~-~~-~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~ 570 (902)
...|+..+--.++. .| -+.+..++++.+-.++... +. ...+..|..+.-+|... ....++.+.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 43354444433333 23 3456777777777766652 11 12334444444444321 224567777
Q ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 048778 571 FGKILKFGL-VPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDL-G 648 (902)
Q Consensus 571 ~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g 648 (902)
+++..+.+. .|++..|-+ --|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+...+. |
T Consensus 467 le~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 467 LEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 777776443 344444433 347788899999999999999865778889999999999999999999999888743 3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------CC-----CC--CHHHHHHHHHHHHh
Q 048778 649 VSPNHITYSILVRAHASTGRLDHAFKIVSFMVAN---------------------GC-----QL--NSNVYSALLAGLVS 700 (902)
Q Consensus 649 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---------------------g~-----~~--~~~~~~~l~~~~~~ 700 (902)
.|......-+..-..-++.+++......+..- |. .| ...++..+..-...
T Consensus 545 --~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 545 --DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred --hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 22211111222222345555555444333210 00 11 12233333322222
Q ss_pred cC---CcCCccccccccCCCCCCCCCcCC-cchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 048778 701 SN---KASGVLSISTSCHSDAGSSRLEHD-DDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGR 776 (902)
Q Consensus 701 ~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 776 (902)
.+ ..+..+.-++.. .++...-.. ...|...+..+.+.+..++|...+.++.+..|-....|+..+..+...|+
T Consensus 623 ~~~~~~se~~Lp~s~~~---~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 623 QLKSAGSELKLPSSTVL---PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred hhhhcccccccCccccc---CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh
Confidence 22 111111111000 000000000 22333445556677888899989999998888888899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHH--HHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 048778 777 IVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLE--FMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKN 851 (902)
Q Consensus 777 ~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~ 851 (902)
+++|.+.|..++. +.|+.+- ..++.++.+.|+..-|.. ++..+++. +|+ .+.|..++.++.+.|+.++|.+
T Consensus 700 ~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 700 LEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred hHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHH
Confidence 9999999999988 6788777 899999999998777777 88888885 564 5899999999999999999999
Q ss_pred HHHHHHhCC
Q 048778 852 LVSDLFRYN 860 (902)
Q Consensus 852 ~~~~~~~~~ 860 (902)
-|+-+.+..
T Consensus 776 cf~aa~qLe 784 (799)
T KOG4162|consen 776 CFQAALQLE 784 (799)
T ss_pred HHHHHHhhc
Confidence 999886654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.3e-12 Score=134.64 Aligned_cols=282 Identities=9% Similarity=0.053 Sum_probs=155.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHH
Q 048778 526 NGKTGEALMIFERMVQNTDLKTPHVLNSF-LDVLCKENKLKEEYAMFGKILKFGLVPSVVTYT--ILVDGLFRAGNIALA 602 (902)
Q Consensus 526 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~A 602 (902)
.|+++.|.+.+....+.. +++..+..+ .....+.|+++.|...+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 456666665555443321 112222222 23335566666666666666542 33332221 224455666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 048778 603 MSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNH-------ITYSILVRAHASTGRLDHAFKI 675 (902)
Q Consensus 603 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~ 675 (902)
...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66666666653 334555666666666666666666666666655432221 1222222222233334444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHh
Q 048778 676 VSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIES 755 (902)
Q Consensus 676 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 755 (902)
++...+. .+.+......+...+...| +.++|.+.+++..+
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g---------------------------------------~~~~A~~~L~~~l~ 291 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECD---------------------------------------DHDTAQQIILDGLK 291 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCC---------------------------------------CHHHHHHHHHHHHh
Confidence 4444321 2335555566666666666 77777777777766
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH
Q 048778 756 CGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESH 833 (902)
Q Consensus 756 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 833 (902)
. ++++... +..+....++.+++++..++..+ ..|++.. ..++..|...|++++|.+.|+.+.+. .|+...+
T Consensus 292 ~-~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~ 364 (398)
T PRK10747 292 R-QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDY 364 (398)
T ss_pred c-CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 3 3344222 22233344677777777777766 3355444 66677777777777777777777663 5777676
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 834 CTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 834 ~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
..++.++.+.|+.++|..++++.+..
T Consensus 365 ~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 365 AWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777777777777777776543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-11 Score=117.89 Aligned_cols=290 Identities=15% Similarity=0.190 Sum_probs=215.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCH
Q 048778 561 ENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNV------HTYTVIINGLCQRGRF 634 (902)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~ 634 (902)
..+.++|.++|-+|.+.. +.+..+--+|.+.|.+.|..+.|+++.+.+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 456788888888887632 224555667788888888888888888888763 443 2344566778889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCcCCcccc
Q 048778 635 KEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSN----VYSALLAGLVSSNKASGVLSI 710 (902)
Q Consensus 635 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~l~~~~~~~~~~~~~~~~ 710 (902)
+.|+.+|..+.+.| .--......|+..|-...+|++|++.-+++.+.+-.+... .|.-|...+....
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~-------- 194 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS-------- 194 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh--------
Confidence 99999999998765 4456778889999999999999999999888765444321 2333333333333
Q ss_pred ccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 711 STSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
+++.|...+.++.+.+|....+-..+++.....|+++.|++.++.+.+.
T Consensus 195 -------------------------------~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 195 -------------------------------DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ 243 (389)
T ss_pred -------------------------------hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999985
Q ss_pred CCCchHhH---HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchh
Q 048778 791 GVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAA 867 (902)
Q Consensus 791 ~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~ 867 (902)
+ |+-.. ..|..+|.+.|+.++...++.++.+. .+.......+.+......-.++|..++.+-+.. .|+...
T Consensus 244 n--~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~g 317 (389)
T COG2956 244 N--PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRG 317 (389)
T ss_pred C--hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHH
Confidence 4 55443 88999999999999999999999875 344444445555444444456677666664443 567666
Q ss_pred HHHHHHHHhc---CCcHhHHHHHHHHHHhcCcccCC
Q 048778 868 VLPYIEFLLT---GDELGKSIDLLNLIDQVHYRQRP 900 (902)
Q Consensus 868 ~~~l~~~~~~---~g~~~~a~~~l~~~~~~~~~~~~ 900 (902)
.+.+++..+. .|.+.+...+++.|...-.+..|
T Consensus 318 f~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 318 FHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKP 353 (389)
T ss_pred HHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcC
Confidence 7777776543 57788888889988877666555
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-10 Score=119.10 Aligned_cols=503 Identities=10% Similarity=0.018 Sum_probs=287.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHH
Q 048778 200 YRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLC 279 (902)
Q Consensus 200 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 279 (902)
+..+++-+..+.++..|.-+-+++...+..|+. ---+..+++-.|+++.|..+...-.- ...|..+......++.
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~l---e~~d~~cryL~~~~l~ 93 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKL---EKRDIACRYLAAKCLV 93 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHH
Confidence 444444455566677777777777666544443 33466777777888888777765432 2467778888888888
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 048778 280 EVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANG 359 (902)
Q Consensus 280 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 359 (902)
+..++++|..++..-. +.-++..|-.-=. ...-..+.+. ++... ......+-.-...|....+.++|..
T Consensus 94 ~lk~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~----~~~~~--~~essic~lRgk~y~al~n~~~ar~ 162 (611)
T KOG1173|consen 94 KLKEWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAG----EDLMI--NLESSICYLRGKVYVALDNREEARD 162 (611)
T ss_pred HHHHHHHHHHHhcccc---hhhcchhhcchhh--hceeccCccc----ccccc--cchhceeeeeeehhhhhccHHHHHH
Confidence 8888888888876321 1111111100000 0000001111 00000 0001111111123444456667777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CC
Q 048778 360 MCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVD-GG 438 (902)
Q Consensus 360 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~-~g 438 (902)
-|.+.... |...+..+...-.. .+-.+.+.++.+... |..+ -.+.-.+-++.+-++.. ..
T Consensus 163 ~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l----~~a~---------~~~ed~e~l~~lyel~~~k~ 223 (611)
T KOG1173|consen 163 KYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESL----DLAM---------LTKEDVERLEILYELKLCKN 223 (611)
T ss_pred HHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcc----cHHh---------hhhhHHHHHHHHHHhhhhhh
Confidence 66666553 44444333221111 112222222222221 1110 00011111111111110 00
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 439 LFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITA 518 (902)
Q Consensus 439 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 518 (902)
.... ...+.++ +.+. +...+........+-+...+++.+..++.+...+.. ++....+..
T Consensus 224 ~n~~---------~~~r~~~--------~sl~--~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~ 283 (611)
T KOG1173|consen 224 RNEE---------SLTRNED--------ESLI--GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPL 283 (611)
T ss_pred cccc---------ccccCch--------hhhh--hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHH
Confidence 0000 0000000 1111 123344444444555555666666666666666552 334444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 048778 519 LADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPS-VVTYTILVDGLFRAG 597 (902)
Q Consensus 519 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 597 (902)
-|.++...|+..+-..+-.++.+. .+..+.+|-++.-.|...|+.++|++.|.+.... .|. ...|-.+.+.|+-.|
T Consensus 284 ~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~ 360 (611)
T KOG1173|consen 284 HIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEG 360 (611)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcc
Confidence 445566666655555555555553 3345566777777777777777777777766542 222 456788888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 598 NIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVS 677 (902)
Q Consensus 598 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 677 (902)
..++|+..+..+.+. ++-...-+--+.--|.+.++.+.|.++|.+..... +.|+..++-+.-.....+.+.+|..+|+
T Consensus 361 EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred hHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 889998888877663 12122223344555778889999999999888753 5677888888888888899999999998
Q ss_pred HHHHC--CCCC----CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHH
Q 048778 678 FMVAN--GCQL----NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRD 751 (902)
Q Consensus 678 ~m~~~--g~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 751 (902)
..+.. ...+ -..+++.|...|.+.+ .+++|+..++
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~---------------------------------------~~~eAI~~~q 479 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLN---------------------------------------KYEEAIDYYQ 479 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHh---------------------------------------hHHHHHHHHH
Confidence 88732 1111 2346777888888888 9999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHH
Q 048778 752 RIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIG 803 (902)
Q Consensus 752 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~ 803 (902)
+.+...|.+..++.+++..|...|+++.|++.|.+++. +.|++.. ..++.
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 99999999999999999999999999999999999988 8899866 54444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-09 Score=104.86 Aligned_cols=502 Identities=12% Similarity=0.051 Sum_probs=300.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 048778 312 ALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIA 391 (902)
Q Consensus 312 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 391 (902)
-+....++..|+.+++.-...+-+-...+---+..++.+.|++++|...+.-+.+. -.++...+-.|.-++.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHH
Confidence 34455667777777665543322222223333556777888999998888887764 34566666667766667788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 392 AFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSI 471 (902)
Q Consensus 392 A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 471 (902)
|..+-....+ +......|.....+.|+-++...+.+.+.+.- .---+|.......-.+++|++++.+...
T Consensus 110 A~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8777654322 34445556666677888888777777765421 1222344444455678899999999886
Q ss_pred CCCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 048778 472 FGLVPDGFTFTSII-DGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHV 550 (902)
Q Consensus 472 ~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 550 (902)
. .|+....|.-+ -+|.+..-++-+.++++--... ++-+....+.......+.=.-..|..-.+++...+...
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---- 252 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---- 252 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence 5 35555555443 3567788888888888877765 23344445544444333333333444444444432211
Q ss_pred HHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 551 LNSFLDVLCKEN-----KLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVII 625 (902)
Q Consensus 551 ~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 625 (902)
...+.-+|+.+ +-+.|++++-.+.+ +.|.. --.|+--|.+.+++++|..+.+++.- ..|-......+.
T Consensus 253 -~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv 325 (557)
T KOG3785|consen 253 -YPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV 325 (557)
T ss_pred -chhHHHHHHcCeEEEeCCccHHHhchHHHh--hChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH
Confidence 22344455443 44677777776665 23332 22344457889999999998887642 233333333222
Q ss_pred HHH-Hh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 626 NGL-CQ----RGRFKEAEMLLFKMFDLGVSPN-HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLV 699 (902)
Q Consensus 626 ~~~-~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 699 (902)
.+- .+ .....-|.+.|+-.-+.+..-| ...-.++..++.-..++++.+-+++.....-...|...+ .+..+.+
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHH
Confidence 221 11 1123455555554444444433 334456666677777888888888777654222333333 4556666
Q ss_pred hcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCHH
Q 048778 700 SSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG-GSTTDFYNFLVVELCRAGRIV 778 (902)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 778 (902)
..| ++.+|.++|-.+.... .++......|+++|.+.|+.+
T Consensus 405 atg---------------------------------------ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 405 ATG---------------------------------------NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred Hhc---------------------------------------ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCch
Confidence 666 9999999998877655 344445567788999999999
Q ss_pred HHHHHHHHHHHcCCCchH-hH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 779 EADRIMKDIMKSGVFPAK-AI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 779 ~A~~~~~~~~~~~~~p~~-~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
-|..++-++-. |.+ .. ..++..|.+.+.+--|.+.|+.+.. .+|+++.| +|+......++..
T Consensus 446 lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW---------eGKRGACaG~f~~ 510 (557)
T KOG3785|consen 446 LAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW---------EGKRGACAGLFRQ 510 (557)
T ss_pred HHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc---------CCccchHHHHHHH
Confidence 99888766532 333 33 6677788899998888888888765 37777765 4666677777777
Q ss_pred HHhCCCCCcch-hHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 856 LFRYNGIEEKA-AVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 856 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
+......|-+. .....+ .+++..-..+|.-+++.|.++
T Consensus 511 l~~~~~~~~p~~~~rEVv-hllr~~~nsq~E~mikvvrkw 549 (557)
T KOG3785|consen 511 LANHKTDPIPISQMREVV-HLLRMKPNSQCEFMIKVVRKW 549 (557)
T ss_pred HHcCCCCCCchhHHHHHH-HHHHhCCCchHHHHHHHHHHH
Confidence 65544333322 222222 344444445666666666554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-07 Score=98.17 Aligned_cols=92 Identities=14% Similarity=0.069 Sum_probs=47.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 048778 164 CYSCLLMSLAKLDLGFVAYAVFVKLIAD-GFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGH 242 (902)
Q Consensus 164 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 242 (902)
.|-..+..+.++|++..-...|++.... -+.-....|...+.-....+-.+-+..+++.-++. ++..-+-.|.-+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 4555555555666666666666654432 22233345555555555555555555555555543 222244445555
Q ss_pred hccCCHHHHHHHHHHhh
Q 048778 243 CRGNDLKEAFKVFDVMS 259 (902)
Q Consensus 243 ~~~g~~~~A~~~~~~m~ 259 (902)
++.+++++|.+.+..+.
T Consensus 180 ~~~d~~~eaa~~la~vl 196 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVL 196 (835)
T ss_pred HhccchHHHHHHHHHhc
Confidence 55555555555555554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-07 Score=99.54 Aligned_cols=343 Identities=13% Similarity=0.157 Sum_probs=199.3
Q ss_pred HHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHH-----------------
Q 048778 498 NGFFGLMVKKGI--SPDEATITALADGHCKNGKTGEALMIFERMVQNTD--LKTPHVLNSFLD----------------- 556 (902)
Q Consensus 498 ~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~----------------- 556 (902)
..+.++....++ ..|+...+..+.++...+...+-+++++++.-.+. ..+...-|.|+-
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHh
Confidence 456666665543 23666677778888888888888888888764311 111111121211
Q ss_pred ----------HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 557 ----------VLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIIN 626 (902)
Q Consensus 557 ----------~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (902)
.....+-+++|..+|++.- .+....+.|+. ..+.++.|.+.-++. .....|..+..
T Consensus 1047 dnyDa~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlak 1112 (1666)
T KOG0985|consen 1047 DNYDAPDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAK 1112 (1666)
T ss_pred ccCCchhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHH
Confidence 1222333444555544432 13333333332 234444454443332 23467888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCC
Q 048778 627 GLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASG 706 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 706 (902)
+-.+.|.+.+|++-|-+ ..|+..|..+++...+.|.|++-.+++....++.-+|...+ .|+-+|.+.++..+
T Consensus 1113 AQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1113 AQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTE 1184 (1666)
T ss_pred HHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHH
Confidence 98999999988876643 24778899999999999999999999988888766775543 57778888773221
Q ss_pred ccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 707 VLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
.-+. -.++..-.....++.++..+.++.|.-+|.... .|..|+..+...|.+..|.....+
T Consensus 1185 lE~f-----------i~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS--------N~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1185 LEEF-----------IAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS--------NFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHH-----------hcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1100 012222333445555666666666666665443 366677777777777777666555
Q ss_pred HHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcch
Q 048778 787 IMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKA 866 (902)
Q Consensus 787 ~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ 866 (902)
+-. ...+..+..+|...+.+.-|. |-..++....+-...++.-|...|-++|-+.+++.. .|.+-..+
T Consensus 1246 Ans-----~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~--LGLERAHM 1313 (1666)
T KOG0985|consen 1246 ANS-----TKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG--LGLERAHM 1313 (1666)
T ss_pred ccc-----hhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh--hchhHHHH
Confidence 421 111144555565554443321 211122223345556777788889999999888886 44444444
Q ss_pred hHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 867 AVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 867 ~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
..++=+..++..=+++.-.+.++..+.
T Consensus 1314 gmfTELaiLYskykp~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1314 GMFTELAILYSKYKPEKMMEHLKLFWS 1340 (1666)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444445555555566666666665543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-09 Score=110.16 Aligned_cols=426 Identities=13% Similarity=0.060 Sum_probs=211.2
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 048778 385 KQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALK 464 (902)
Q Consensus 385 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 464 (902)
..+++...+++.+.+.+. .+-...|.....-.++..|+.++|....+......+ .+.+.|..+.-.+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHH
Confidence 344555555555555542 122223333333345556666666666666555433 445566666655666667777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 048778 465 IFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNT- 543 (902)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 543 (902)
.|......+ +.|...+..+.-.-.+.++++........+.+.. +.....|..+..++.-.|+...|..++++..+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777766654 4456666666656666667766666666666542 2245566666666666777777777777666553
Q ss_pred CCCChhhHHHHH------HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 048778 544 DLKTPHVLNSFL------DVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPN 617 (902)
Q Consensus 544 ~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 617 (902)
..|+...+.... ....+.|..++|.+.+..-... +.-....-.+-.+.+.+.+++++|..++..++.. .||
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 234444443322 2334556666666665544321 1111222233445566777777887777777775 355
Q ss_pred HHHHHH-HHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 618 VHTYTV-IINGLCQRGRFKEAE-MLLFKMFDLGVSPNHITYSILVRAHASTGR-LDHAFKIVSFMVANGCQLNSNVYSAL 694 (902)
Q Consensus 618 ~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~l 694 (902)
..-|.. +..++.+-.+.-++. .+|....+. .|....-..+--......+ .+..-+++..+.++|+++-.....+|
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL 329 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL 329 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH
Confidence 444433 344443333333333 444444332 1221111111111111122 23333455556666665432222222
Q ss_pred -------------HHHHHhcCCcCCccccccccCCCCCC-CCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC
Q 048778 695 -------------LAGLVSSNKASGVLSISTSCHSDAGS-SRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGST 760 (902)
Q Consensus 695 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 760 (902)
+..|...-.. ...+... +.+. ....+....+..+++.+-+.|+++.|...++.++..-|.-
T Consensus 330 yk~p~k~~~le~Lvt~y~~~L~~---~~~f~~~--D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTl 404 (700)
T KOG1156|consen 330 YKDPEKVAFLEKLVTSYQHSLSG---TGMFNFL--DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTL 404 (700)
T ss_pred HhchhHhHHHHHHHHHHHhhccc---ccCCCcc--cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchH
Confidence 1122111100 0000000 0000 0111112344455555666666666666666666554555
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcC
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESG 825 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 825 (902)
+..|..-++.+...|.+++|...++++.+.. .||... ..-+.=..+.++.++|.++.....+.|
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 5555555666666666666666666665521 233333 244444455666666666666655443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-08 Score=108.68 Aligned_cols=440 Identities=14% Similarity=0.074 Sum_probs=239.3
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC
Q 048778 327 DEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKP 406 (902)
Q Consensus 327 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 406 (902)
.++....+..+..+|..+.-++..+|+++.+.+.|++.... ..-....|+.+...|...|.-..|..+++.-......|
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 33333345557777777777788888888888888877653 22255667777777888888777888777665543334
Q ss_pred CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhC--CC--CCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHH
Q 048778 407 NIRTYNELMEGLC--RMNKSYKAVHLLKRVVDG--GL--FPDEITYNILVDGFCRE-----------GQLDIALKIFNSM 469 (902)
Q Consensus 407 ~~~t~~~li~~~~--~~g~~~~A~~~~~~~~~~--g~--~~~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~m 469 (902)
+..+--.++...| +.+..+++++.-.++... +. ......|-.+.-+|... ....++++.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 4444333333333 346666666666665551 11 11233344444344321 1234566666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 048778 470 SIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPH 549 (902)
Q Consensus 470 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 549 (902)
.+.+ +.|..+...+.--|+..++++.|....++..+.+-.-+...|..+.-.+...+++.+|+.+.+.....- ..|..
T Consensus 471 v~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~ 548 (799)
T KOG4162|consen 471 VQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHV 548 (799)
T ss_pred HhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhh
Confidence 6554 223333333333455666777777777777776555567777777777777777777777777655431 11111
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 048778 550 VLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLA--GCPPNVHTYTVIING 627 (902)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~ 627 (902)
....-+..-..-++.+++......++.. |... .+....++-....+....+.-. ...-...++..+..-
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 1111122222345555655555554421 0000 0000111111112222211110 000011122222211
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 628 LCQRGRFKEAEMLLFKMFDLGVS--PN------HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLV 699 (902)
Q Consensus 628 ~~~~g~~~~A~~~~~~m~~~g~~--p~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 699 (902)
....+ +.+..-.. +...-+. |+ ...|......+.+.++.++|...+.+..+. .+-....|......+.
T Consensus 620 ~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 620 VASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLE 695 (799)
T ss_pred HHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHH
Confidence 11110 00000000 1111111 22 234555666677778888887777777642 2224445555555555
Q ss_pred hcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 700 SSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVE 779 (902)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 779 (902)
..| +.++|.+.|..++..+|.+..+..+++.++.+.|+..-
T Consensus 696 ~~~---------------------------------------~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~l 736 (799)
T KOG4162|consen 696 VKG---------------------------------------QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRL 736 (799)
T ss_pred HHH---------------------------------------hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcch
Confidence 555 88888888888888888888888888888888887766
Q ss_pred HHH--HHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 780 ADR--IMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 780 A~~--~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
|.. ++..+++ +.|+... ..++..+.+.|+.++|.+.|..+.+
T Consensus 737 a~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 737 AEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 666 7888877 4454433 7888888888888888888887765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-09 Score=103.74 Aligned_cols=451 Identities=12% Similarity=0.057 Sum_probs=284.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChh
Q 048778 206 ALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLD 285 (902)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 285 (902)
-+...+++..|+.+++.-...+-.-...+-.-+..++.+.|++++|..++..+.+ ...++...+-.+.-++.-.|.+.
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~--~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN--KDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc--cCCCCcccchhHHHHHHHHHHHH
Confidence 3445667777777777665544333334444566788888999999999988776 34566677777777777778888
Q ss_pred HHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 048778 286 EAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKML 365 (902)
Q Consensus 286 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 365 (902)
+|..+-....+ ++..-..|.+.--+.++-++-..+.+.+... ..---+|.......-.+.+|.+++.+.+
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877655432 3333344455556778877777777776542 1223334444444456899999999998
Q ss_pred HCCCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 048778 366 QDGHFPGVVTYNVL-INGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEI 444 (902)
Q Consensus 366 ~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 444 (902)
..+ |+....|.. .-+|.+..-++-+.++++-.... ++-+....|.......+.=+-..|..-...+.+.+-..
T Consensus 179 ~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--- 252 (557)
T KOG3785|consen 179 QDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--- 252 (557)
T ss_pred hcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence 753 444555543 35677888888888888887765 22234445555444444333333444444544433211
Q ss_pred hHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 445 TYNILVDGFCRE-----GQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITAL 519 (902)
Q Consensus 445 ~~~~ll~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 519 (902)
| ..+.-+++. .+-+.|++++-.+.+. -+.+-..|+-.|.+.+++.+|..+.+++... .|-......+
T Consensus 253 -~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgv 324 (557)
T KOG3785|consen 253 -Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGV 324 (557)
T ss_pred -c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHH
Confidence 1 123333433 3446788877766643 2334455667788999999999988776432 3333333333
Q ss_pred HHHHHhcC-------CHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 520 ADGHCKNG-------KTGEALMIFERMVQNTDLKTP-HVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVD 591 (902)
Q Consensus 520 i~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 591 (902)
+ +...| ...-|...|+-.-+.+..-|. ..-.++...+.-..++++.+..++.+...-...|...+| +..
T Consensus 325 v--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQ 401 (557)
T KOG3785|consen 325 V--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQ 401 (557)
T ss_pred H--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHH
Confidence 2 23333 244566666665555443333 234556667777778999999999888765555666665 688
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCH
Q 048778 592 GLFRAGNIALAMSMIEVMKLAGCPPNVHTY-TVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHI-TYSILVRAHASTGRL 669 (902)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~ 669 (902)
+++..|++.+|.++|-......++ |..+| ..|.++|.+.++.+.|.+++-++-. +.+.. ....+.+-|.+.+.+
T Consensus 402 Ak~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHH
Confidence 899999999999999877654433 44455 4567888999999988877655432 22333 334456678888998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH
Q 048778 670 DHAFKIVSFMVANGCQLNSNVY 691 (902)
Q Consensus 670 ~~A~~~~~~m~~~g~~~~~~~~ 691 (902)
--|-+.|+.+.. ..|++..|
T Consensus 478 yyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 478 YYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHhhhHHHc--cCCCcccc
Confidence 888888888775 46766655
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.9e-10 Score=109.54 Aligned_cols=284 Identities=9% Similarity=0.036 Sum_probs=171.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 048778 491 LGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAM 570 (902)
Q Consensus 491 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 570 (902)
.|++.+|.+...+-.+.+-. ....|..-+.+-...|+.+.+-.++.+..+....++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46777777777666655433 23344444555566677777777777776653344555555566666677777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 571 FGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNV-------HTYTVIINGLCQRGRFKEAEMLLFK 643 (902)
Q Consensus 571 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 643 (902)
.+++.+.+. .+........++|.+.|++.....+...|.+.|.-.|. .+|..+++-....+..+.-...+++
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 777666542 24556666777777777777777777777776654443 2455555555555545554455555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCC
Q 048778 644 MFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRL 723 (902)
Q Consensus 644 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (902)
.-.. .+.++..-.+++.-+.+.|+.++|.+++++..+++..|.. ..++ .+.+-+
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~~-~~l~~~--------------------- 308 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRLI-PRLRPG--------------------- 308 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHHH-hhcCCC---------------------
Confidence 5433 2445556666677777777777777777777776666551 1111 222333
Q ss_pred cCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHH
Q 048778 724 EHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSII 802 (902)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~ 802 (902)
+.+.-.+..++..+..|.++..+.+|+..|.+.+.|.+|.+.|+.+++ ..|+... ..++
T Consensus 309 ------------------d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la 368 (400)
T COG3071 309 ------------------DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELA 368 (400)
T ss_pred ------------------CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHH
Confidence 555555666666666666666666677666666666666666666665 3455444 5555
Q ss_pred HHHHccCChHHHHHHHHHHH
Q 048778 803 GCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 803 ~~~~~~g~~~~A~~~~~~~~ 822 (902)
+++.+.|+.++|.+..++.+
T Consensus 369 ~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 369 DALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 55555555555555555544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-07 Score=99.83 Aligned_cols=600 Identities=14% Similarity=0.092 Sum_probs=330.0
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHH
Q 048778 246 NDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSL 325 (902)
Q Consensus 246 g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 325 (902)
+.+...++..+.+.+ +++....|.....-.++..|+-++|.+..+.-.+..+. +.+.|.++.-.+....++++|++.
T Consensus 21 kQYkkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHhHHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 445555555555555 33334444444444456667777777766665554333 556666666666666777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-C
Q 048778 326 FDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRT-C 404 (902)
Q Consensus 326 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~ 404 (902)
|......+.. |...+.-+.-.-.+.|+++.....-.+..+... .....|..+..++.-.|+...|..++++..+.. -
T Consensus 98 y~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7777765432 666666666666677777777777666666422 245667777777777888888888887776553 2
Q ss_pred CCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048778 405 KPNIRTYNELM------EGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDG 478 (902)
Q Consensus 405 ~p~~~t~~~li------~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 478 (902)
.|+...|.-.. ......|..++|++.+..-... +......--+-...+.+.+++++|..++..+... .||.
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn 252 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDN 252 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cchh
Confidence 45555443332 2334567777777666554332 1112222233455677888888888888888876 3666
Q ss_pred HHHHHHH-HHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048778 479 FTFTSII-DGLCKLGKPELAN-GFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLD 556 (902)
Q Consensus 479 ~~~~~li-~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 556 (902)
..|...+ .++.+-.+.-++. .+|....+.-.. .......=++......-.+...+++..+.+.|+++ ++..+..
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~S 328 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRS 328 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHH
Confidence 5555444 3443333333443 555555543111 11000111111111222333445566666666533 2333333
Q ss_pred HHHhcCChhHHHHHHHHHH----HCC----------CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-
Q 048778 557 VLCKENKLKEEYAMFGKIL----KFG----------LVPSVVTY--TILVDGLFRAGNIALAMSMIEVMKLAGCPPNVH- 619 (902)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~----~~~----------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~- 619 (902)
.|-.-...+--.++...+. ..| -+|....| -.++..|-+.|+++.|...++....+ .|+.+
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliE 406 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIE 406 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHH
Confidence 3322221111111111111 110 14555544 44677788999999999999999875 66654
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 620 TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLV 699 (902)
Q Consensus 620 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 699 (902)
.|..-.+.+...|++++|..++++..+.+ .+|...=.--+.-..++.+.++|.++.....+.|. +....-.-+.+.+
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmW 483 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMW 483 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHH
Confidence 66667788999999999999999999876 67776655677778899999999999998887664 2222111111111
Q ss_pred hcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC------CC----------CHHH
Q 048778 700 SSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG------GS----------TTDF 763 (902)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~----------~~~~ 763 (902)
-. ...++.+.+++++.+|.+-|..+.+.. .- ...+
T Consensus 484 f~-----------------------------~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrs 534 (700)
T KOG1156|consen 484 FQ-----------------------------LEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRS 534 (700)
T ss_pred Hh-----------------------------HhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHH
Confidence 00 011233344445555554444443321 11 1222
Q ss_pred HHHHHHH---HHhcCC----HHHHHHHHHHHHHcC-CC-chHhH-HHHHH----HHHc-cCChHHHHHHHHHHHH-----
Q 048778 764 YNFLVVE---LCRAGR----IVEADRIMKDIMKSG-VF-PAKAI-TSIIG----CYCK-ERKYDDCLEFMNLILE----- 823 (902)
Q Consensus 764 ~~~l~~~---~~~~g~----~~~A~~~~~~~~~~~-~~-p~~~~-~~l~~----~~~~-~g~~~~A~~~~~~~~~----- 823 (902)
|.-|... +...-. ...|+++|-++.+.. .. +.... ..+.. ...+ ..+-.+|..--+.+.+
T Consensus 535 Yv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~ 614 (700)
T KOG1156|consen 535 YVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKE 614 (700)
T ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333321 111111 346777887776642 00 11111 22221 1111 1122233332222221
Q ss_pred ----cCC--CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 824 ----SGF--VPSFESHCTVIQGLQSEGR-NKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 824 ----~~~--~p~~~~~~~l~~~l~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
.|. +||.. .++.-+.+..+ .+||.+++......+.. ...++..-...|.+.|+..-|.+.+++.....
T Consensus 615 ~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~-~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~~ 689 (700)
T KOG1156|consen 615 AKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKE-KGETYILSFELYYRKGKFLLALACLNNAEGIH 689 (700)
T ss_pred hccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhccc-chhhhhhhHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 221 23333 45555666555 78899999887555432 34455444566888999999999888876554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.9e-10 Score=106.75 Aligned_cols=289 Identities=15% Similarity=0.108 Sum_probs=197.6
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHhHH
Q 048778 281 VGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPN---AHTYTVLIDRLCREGKIDEA 357 (902)
Q Consensus 281 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A 357 (902)
..+.++|.++|-+|.+.... +..+..+|.+.|.+.|..|.|+++++.+.++.--+. ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 57789999999999885222 445566788889999999999999999887621111 23445567788899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 358 NGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNI----RTYNELMEGLCRMNKSYKAVHLLKR 433 (902)
Q Consensus 358 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~ 433 (902)
+.+|..+.+.|. --......|+..|-+..+|++|++.-+++.+.+-.+.. ..|.-|...+....++++|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999987532 23456778899999999999999999988887644432 2345555555667788888988888
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048778 434 VVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDE 513 (902)
Q Consensus 434 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 513 (902)
..+... ..+..--.+.+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+... ..
T Consensus 206 Alqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~ 282 (389)
T COG2956 206 ALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GA 282 (389)
T ss_pred HHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--Cc
Confidence 887543 233333446677888888888888888888775433445667778888888888888888888877632 33
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CChhHHHHHHHHHHH
Q 048778 514 ATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKE---NKLKEEYAMFGKILK 576 (902)
Q Consensus 514 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~ 576 (902)
..-..+.+.-....-.+.|...+.+-+.. .|+...+..+++..... |...+-...++.|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333433333344445555444443332 37777777777665432 334455555555553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.1e-07 Score=97.26 Aligned_cols=304 Identities=11% Similarity=0.096 Sum_probs=168.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048778 525 KNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMS 604 (902)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 604 (902)
..+.+++|..+|++.- .+....+.||. .-+.++.|.+.-++.. ....|..+..+-.+.|.+.+|++
T Consensus 1060 ~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHH
Confidence 3445566666666542 22333333332 2344555555444332 34566666666666676666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 048778 605 MIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGC 684 (902)
Q Consensus 605 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 684 (902)
-|-+. .|...|..+++...+.|.+++-.+++....+..-.|... +.|+-+|.+.++..+-.+++ .
T Consensus 1126 Syika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~ 1190 (1666)
T KOG0985|consen 1126 SYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------A 1190 (1666)
T ss_pred HHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------c
Confidence 55432 245566667777777777777776666665544444443 35666666666666655443 3
Q ss_pred CCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHH
Q 048778 685 QLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFY 764 (902)
Q Consensus 685 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 764 (902)
-||......+.+-|...+.++.+.-..+. .--|.+++.++...|++..|...-+++ .+..+|
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-------------vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktW 1252 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSN-------------VSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTW 1252 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHHH-------------hhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHH
Confidence 45555555555555555543333222211 112334455556666888888776665 467889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--hHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048778 765 NFLVVELCRAGRIVEADRIMKDIMKSGVFP--AKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQ 841 (902)
Q Consensus 765 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~ 841 (902)
.....++...+.+.-|. -.|+.- -... .-++.-|-..|-++|-+.+++..+... ......|..++-.|.
T Consensus 1253 K~VcfaCvd~~EFrlAQ-------iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQ-------ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHhchhhhhHHH-------hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHH
Confidence 98888887776655443 233221 1111 678899999999999999998876321 122344455554453
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHH
Q 048778 842 SEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNL 890 (902)
Q Consensus 842 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~ 890 (902)
+ =+.++-.+.++-....-.. -.+++++-...-|.|..=++..
T Consensus 1325 k-ykp~km~EHl~LFwsRvNi------pKviRA~eqahlW~ElvfLY~~ 1366 (1666)
T KOG0985|consen 1325 K-YKPEKMMEHLKLFWSRVNI------PKVIRAAEQAHLWSELVFLYDK 1366 (1666)
T ss_pred h-cCHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3444444444433222111 1346666666677776655543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-09 Score=107.53 Aligned_cols=285 Identities=10% Similarity=0.086 Sum_probs=168.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048778 526 NGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSM 605 (902)
Q Consensus 526 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 605 (902)
.|++..|+++..+-.+.+..| ...|..-..+-...|+.+.+-.++.+..+.--.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577777777777766654322 2334444455566677777777777776643344555666666667777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 606 IEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNH-------ITYSILVRAHASTGRLDHAFKIVSF 678 (902)
Q Consensus 606 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 678 (902)
.+++.+.+ +-+.........+|.+.|++.+...++.+|.+.|+-.|. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777654 445566667777777777777777777777776654443 2344444444444444443344444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC-
Q 048778 679 MVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG- 757 (902)
Q Consensus 679 m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 757 (902)
..++ .+.++..-.+++.-+..+| +.++|.++.++.++.+
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~---------------------------------------~~~~A~~~i~~~Lk~~~ 294 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLG---------------------------------------DHDEAQEIIEDALKRQW 294 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcC---------------------------------------ChHHHHHHHHHHHHhcc
Confidence 4332 2333444445555555555 7777777777766665
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCT 835 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 835 (902)
.+. ...+ ....+-++.+.-++..++..+. .|+... ..|+..|.+.+.+.+|.++++...+. .|+..+|..
T Consensus 295 D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~ 366 (400)
T COG3071 295 DPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAE 366 (400)
T ss_pred Chh---HHHH-HhhcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHH
Confidence 333 1111 1233445555555555555442 233323 66777777777777777777766653 566677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 836 VIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 836 l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
+++++.+.|+.++|.+..++.+..-
T Consensus 367 la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 367 LADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHh
Confidence 7777777777777777777665443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.2e-07 Score=100.09 Aligned_cols=663 Identities=12% Similarity=0.006 Sum_probs=367.0
Q ss_pred CCCHHHHHHHHHHHHhCCCchhHHHHHHHHHHhccCChhhHHHHHHHHHhhhhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 048778 103 CYDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDDILKLIVALDGLSKDGFKLNYPCYSCLLMSLAKLDLGFVAY 182 (902)
Q Consensus 103 ~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 182 (902)
.+...++..++..+.....+..|...++...+... + +.+|.+.|+...+.+-. +..++-.....|++...+++|.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~---D-m~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSD---D-MKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH---H-HHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHH
Confidence 34566777777777777777788777777765432 3 66799999988876543 6678888999999999999999
Q ss_pred HHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 048778 183 AVFVKLIADGFVLSA--IDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSK 260 (902)
Q Consensus 183 ~~~~~~~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (902)
.+.-..-+.. +.-. ..|..+.-.|...++...|..-|+...+.. +.|...|..+..+|-++|++..|.++|++...
T Consensus 547 ~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 547 EICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 9844333221 1111 223334445678888999999999888775 55788899999999999999999999998875
Q ss_pred cCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048778 261 EASYRPNSV-TFTTLIHGLCEVGRLDEAFSLKDEMCEK------GWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKR 333 (902)
Q Consensus 261 ~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 333 (902)
..|+.. .---.....|..|.+.+|++.+...... +..--..++..+...+...|-...|...++.-++.
T Consensus 625 ---LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~- 700 (1238)
T KOG1127|consen 625 ---LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES- 700 (1238)
T ss_pred ---cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-
Confidence 244432 2222233457889999999988876543 11112233333333344444444444444443321
Q ss_pred CCCCHHHHHHHHHHHHHcC-C---HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh---H---HHHHHHHHHHhCC
Q 048778 334 CKPNAHTYTVLIDRLCREG-K---IDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRI---I---AAFELLALMEKRT 403 (902)
Q Consensus 334 ~~~~~~~~~~li~~~~~~g-~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~m~~~~ 403 (902)
..+++++..+... . ...|..+|-... .. .|+......|..-+-+.+.. + -+.+.+-.-..
T Consensus 701 ------f~~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls-- 770 (1238)
T KOG1127|consen 701 ------FIVSLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS-- 770 (1238)
T ss_pred ------HHHHHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--
Confidence 1111222211100 0 122333333332 11 12222222222212222222 1 01111111111
Q ss_pred CCCCHHHHHHHHHHHHh----cC----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 404 CKPNIRTYNELMEGLCR----MN----KSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLV 475 (902)
Q Consensus 404 ~~p~~~t~~~li~~~~~----~g----~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (902)
...+..+|..+...|.+ .+ +...|...+.+.++.. ..+..+|+.|.-. ...|++.-|...|-+-.... +
T Consensus 771 l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p 847 (1238)
T KOG1127|consen 771 LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-P 847 (1238)
T ss_pred HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-c
Confidence 11223444444433333 11 2245666676666532 2455667666544 66678888877776665543 4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--h--CCCCCChhhH
Q 048778 476 PDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMV--Q--NTDLKTPHVL 551 (902)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~--~~~~~~~~~~ 551 (902)
....+|..+.-.+.+..+++.|...|....... +.|...|.-........|+.-++..+|..-. . .|-.++..-+
T Consensus 848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred cchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 567788888888888899999999998887763 2355556555555556777777777776521 1 1223333333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHH
Q 048778 552 NSFLDVLCKENKLKEEYAMFGKILK---------FGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLA-GCPPNVHTY 621 (902)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~ 621 (902)
-+........|+.++-+...+.+.. .+.+.+...|.+.....-+.+.+..|.++..+.... ...-+..+|
T Consensus 927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqy 1006 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQY 1006 (1238)
T ss_pred HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3333444455555544333332221 134445667777777667777777777766655431 012344444
Q ss_pred HH----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-HHHHHHH
Q 048778 622 TV----IINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANG-CQLNS-NVYSALL 695 (902)
Q Consensus 622 ~~----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~-~~~~~l~ 695 (902)
+. ..+.++..|.++.|...+...-. ..+.....+-+.. .-.|+++++.+.|+++..-. -..+. .....++
T Consensus 1007 nvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva 1082 (1238)
T KOG1127|consen 1007 NVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVA 1082 (1238)
T ss_pred hhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHH
Confidence 43 33445556666655544332211 1122222222222 23478888888888877521 11121 1222222
Q ss_pred HHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 048778 696 AGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG 775 (902)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 775 (902)
-.....+ ..+.|...+-+.....+++..+...|.-.+.-..
T Consensus 1083 ~~~g~~~---------------------------------------~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~ 1123 (1238)
T KOG1127|consen 1083 VCMGLAR---------------------------------------QKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDA 1123 (1238)
T ss_pred HHHhhcc---------------------------------------cchHHHHHHHHHHHhCccchhhHHHHHHHHHHhh
Confidence 2333333 6778888888888888888888887777666655
Q ss_pred CHHHHHHHHHHHHHcCCCchHhH----HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 048778 776 RIVEADRIMKDIMKSGVFPAKAI----TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTV 836 (902)
Q Consensus 776 ~~~~A~~~~~~~~~~~~~p~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 836 (902)
+-.....+.+++.+. ++..... ..+-..|...|+-.-..+.+++..-. .| ++..|..+
T Consensus 1124 da~~ssaileel~kl-~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~--~P~~~~~WslL 1186 (1238)
T KOG1127|consen 1124 DAHGSSAILEELEKL-LKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVHS--NPGDPALWSLL 1186 (1238)
T ss_pred hhhhhHHHHHHHHHh-hhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 555444444444431 1111111 22333466778888888888888753 34 44555444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-10 Score=116.16 Aligned_cols=200 Identities=14% Similarity=0.099 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhh
Q 048778 653 HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYER 732 (902)
Q Consensus 653 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (902)
...+..+...+...|++++|.+.++++++. .+.+...+..+...+...|
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~~------------------------------ 79 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH-DPDDYLAYLALALYYQQLG------------------------------ 79 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcC------------------------------
Confidence 556677777888888888888888887763 1234566666777777777
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCC
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERK 810 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~ 810 (902)
++++|.+.+++.++..|.+...+..++..+...|++++|.+.++++.+....+.... ..++.++...|+
T Consensus 80 ---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (234)
T TIGR02521 80 ---------ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150 (234)
T ss_pred ---------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC
Confidence 888888888888888888888888888888888888888888888876432233222 667888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHH
Q 048778 811 YDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNL 890 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~ 890 (902)
+++|...++++.+.. ..+...+..++.++...|++++|...++++.+.. +.+...+..+...+...|+.++|..+.+.
T Consensus 151 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 151 FDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888888888888642 2245677788888888899999988888887762 33444555666777788888888888877
Q ss_pred HHhc
Q 048778 891 IDQV 894 (902)
Q Consensus 891 ~~~~ 894 (902)
+...
T Consensus 229 ~~~~ 232 (234)
T TIGR02521 229 LQKL 232 (234)
T ss_pred HHhh
Confidence 7543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-08 Score=100.27 Aligned_cols=294 Identities=13% Similarity=0.088 Sum_probs=215.6
Q ss_pred HhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhH
Q 048778 489 CKLGKPELANGFFGLMVKK-GISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTP-HVLNSFLDVLCKENKLKE 566 (902)
Q Consensus 489 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~ 566 (902)
+-.++...|...+-.+... -++-|......+.+.+...|+.++|+..|++.... .|+. .......-.+.+.|++++
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhh
Confidence 3345555555544444332 24556777778888888888888888888877652 1221 112222344567788887
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 567 EYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFD 646 (902)
Q Consensus 567 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 646 (902)
...+...+.... .-....|-.-.......+++..|+.+-++.++.+ +-+...|..-.+.+...|+.++|.-.|+..+.
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 777777766421 1234445444555667889999999999988764 44555666667788899999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCcCCccccccccCCCCCCCCCcC
Q 048778 647 LGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALL-AGLVSSNKASGVLSISTSCHSDAGSSRLEH 725 (902)
Q Consensus 647 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (902)
.. +.+...|.-|+.+|...|++.||.-.-+...+. +..+..+...+. ..+.-..
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp----------------------- 417 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDP----------------------- 417 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCc-----------------------
Confidence 64 567899999999999999999999887777653 344555554442 2221111
Q ss_pred CcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHH
Q 048778 726 DDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGC 804 (902)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~ 804 (902)
.--++|.+++++.+...|.-..+-+.++..+...|+.++++.++++.+. ..||... ..|++.
T Consensus 418 ---------------~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~ 480 (564)
T KOG1174|consen 418 ---------------RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDI 480 (564)
T ss_pred ---------------hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHH
Confidence 0458899999999999999999999999999999999999999999998 6788888 999999
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCH
Q 048778 805 YCKERKYDDCLEFMNLILESGFVPSF 830 (902)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p~~ 830 (902)
+...+.+.+|.+.|..++.. +|..
T Consensus 481 ~~A~Ne~Q~am~~y~~ALr~--dP~~ 504 (564)
T KOG1174|consen 481 MRAQNEPQKAMEYYYKALRQ--DPKS 504 (564)
T ss_pred HHHhhhHHHHHHHHHHHHhc--Cccc
Confidence 99999999999999999874 6654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.6e-10 Score=124.20 Aligned_cols=210 Identities=13% Similarity=0.115 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 564 LKEEYAMFGKILKFGLVPS-VVTYTILVDGLFRA---------GNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGR 633 (902)
Q Consensus 564 ~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 633 (902)
+++|..+|++.++. .|+ ...|..+..++... +++++|...++++.+.+ +.+...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 45566666666552 232 33444444433311 22455566665555543 3344555555555555566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcCCcccccc
Q 048778 634 FKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNS-NVYSALLAGLVSSNKASGVLSIST 712 (902)
Q Consensus 634 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~ 712 (902)
+++|+..++++.+.+ +.+...+..+..++...|++++|+..++++++ ..|+. ..+..++..+...|
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g---------- 420 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHT---------- 420 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhcc----------
Confidence 666666666555543 33344555555555555666666666665554 23322 12222222233344
Q ss_pred ccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 713 SCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG-GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
++++|...++++++.. |.++..+..++.+|...|++++|.+.++++..
T Consensus 421 -----------------------------~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~-- 469 (553)
T PRK12370 421 -----------------------------GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST-- 469 (553)
T ss_pred -----------------------------CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--
Confidence 5555666555555544 34444555555555556666666665555543
Q ss_pred CCchHhH--HHHHHHHHccCChHHHHHHHHHHH
Q 048778 792 VFPAKAI--TSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 792 ~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
..|+... ..+...|...| ++|...++.+.
T Consensus 470 ~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 470 QEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred ccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 2233322 44444455444 35555555444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.7e-07 Score=93.66 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=91.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCC
Q 048778 204 INALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGR 283 (902)
Q Consensus 204 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~ 283 (902)
+.+-.+.+.+..|..+.+.+.... ...-.|-.+..-|...|+++.|.++|.+.. .++-.|..|.++|+
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhcccc
Confidence 334455566777777766655432 222235556667777777777777776543 24445667777777
Q ss_pred hhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 048778 284 LDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGK 363 (902)
Q Consensus 284 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 363 (902)
+++|.++-++. .|.+.....|.+-..-+-+.|++.+|.+++-.+- .|+ ..|.+|-+.|..++..++.++
T Consensus 807 w~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 77777765543 2344445555555555666677777766653322 122 234556666666666555544
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 048778 364 MLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLA 397 (902)
Q Consensus 364 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 397 (902)
--.. .-..|...+..-|-..|+..+|.+-|-
T Consensus 876 ~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 876 HHGD---HLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hChh---hhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 3211 011223333444444555555544443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-07 Score=98.50 Aligned_cols=151 Identities=17% Similarity=0.106 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 598 NIALAMSMIEVMKLAGCPPN-VHTYTVIINGLCQRGRFKEAEMLLF--------KMFDLGVSPNHITYSILVRAHASTGR 668 (902)
Q Consensus 598 ~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~l~~~~~~~g~ 668 (902)
.+..|.+++....+.. +-+ ..+...++......|+++.|++++. .+.+.+..|- +..++...+.+.++
T Consensus 356 ~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKD 432 (652)
T ss_pred HHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccC
Confidence 4677777777776653 222 3455566677788899999999988 5555554444 44566777788888
Q ss_pred HHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHH
Q 048778 669 LDHAFKIVSFMVAN--GCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHA 746 (902)
Q Consensus 669 ~~~A~~~~~~m~~~--g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 746 (902)
-+.|..++.+.++- .-.+......+++.- .+..-.+.|+.++|
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~-----------------------------------aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMRE-----------------------------------AAEFKLRHGNEEEA 477 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHH-----------------------------------HhHHHHhcCchHHH
Confidence 77777777777641 011122222222211 11122233599999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 747 FRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDI 787 (902)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 787 (902)
..+++++.+.+|+|..+...++.+|+.. +.+.|+.+-.++
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999999999999999999987 577887776554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.3e-10 Score=125.17 Aligned_cols=248 Identities=10% Similarity=0.043 Sum_probs=145.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 598 NIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ---------RGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGR 668 (902)
Q Consensus 598 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 668 (902)
+.++|..+|++..+.. +.+...|..+..++.. .+++++|...+++..+.+ +.+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 3567777777777652 2234455555444332 233677777777777654 4456666677777777777
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHH
Q 048778 669 LDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAF 747 (902)
Q Consensus 669 ~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 747 (902)
+++|...++++++. .| +...+..+...+...| ++++|.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G---------------------------------------~~~eAi 392 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAG---------------------------------------QLEEAL 392 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC---------------------------------------CHHHHH
Confidence 77777777777763 34 3455666666676666 777777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcC
Q 048778 748 RLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESG 825 (902)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 825 (902)
..++++++.+|.++..+..++..+...|++++|+..++++.+.. .|+... ..++.+|...|++++|...++++...
T Consensus 393 ~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~- 470 (553)
T PRK12370 393 QTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ- 470 (553)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-
Confidence 77777777776666555555555666777777777777766532 233222 55666677777777777777766543
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcCc
Q 048778 826 FVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYN-GIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVHY 896 (902)
Q Consensus 826 ~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~ 896 (902)
.|+ ......++..|...| ++|...++++.+.. ..+....+..++ +.-.|+.+.+..+ +++.+.|+
T Consensus 471 -~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 471 -EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred -cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHHHH-HHhhccch
Confidence 333 244445555555555 46666666654431 222222232222 3334555555544 55555443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.6e-10 Score=111.00 Aligned_cols=196 Identities=11% Similarity=0.053 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRA 662 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 662 (902)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555566666666666666666665542 3344555556666666666666666666665543 3344555555666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhc
Q 048778 663 HASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREM 741 (902)
Q Consensus 663 ~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (902)
+...|++++|.+.+++..+....+ ....+..+...+...|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------------------------------- 149 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG--------------------------------------- 149 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC---------------------------------------
Confidence 666666666666666665421111 2233333444444444
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|...++++++..|.+...+..++..+...|++++|...++++.+. .|+... ..++..+...|+.++|..+.+
T Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555655555555555555555555555555555555555555555543 122111 334444445555555555444
Q ss_pred HH
Q 048778 820 LI 821 (902)
Q Consensus 820 ~~ 821 (902)
.+
T Consensus 228 ~~ 229 (234)
T TIGR02521 228 QL 229 (234)
T ss_pred HH
Confidence 44
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-07 Score=100.54 Aligned_cols=423 Identities=14% Similarity=0.126 Sum_probs=224.5
Q ss_pred CHhhHHHHHH--HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CC
Q 048778 161 NYPCYSCLLM--SLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHG---------FC 229 (902)
Q Consensus 161 ~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---------~~ 229 (902)
|..|-..++. -|+-.|..+.|.+..+-+.. ...|..+.+.|.+.++++-|.-.+..|.... -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4445555543 45667888888777766543 3467788888888777777766665554210 01
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHH
Q 048778 230 LDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVL 309 (902)
Q Consensus 230 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 309 (902)
++ .+-..........|.+++|..++.+-+. |..|=..|-..|.+++|+++-+.--+-.++ .||..-
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~y 864 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNY 864 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHH
Confidence 11 1222222233456777777777776654 333444555677778777776553332222 344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 048778 310 IKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRI 389 (902)
Q Consensus 310 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 389 (902)
..-+-..++.+.|++.|++.-.. --.++..|. .++.......+.+. |...|.-....+-..|++
T Consensus 865 A~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEM 928 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccch
Confidence 44555566777777777653211 111111111 11222222222222 334444444445567777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 390 IAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSM 469 (902)
Q Consensus 390 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 469 (902)
+.|+.++....+ |-.+++..|-.|+.++|-.+-++- -|......|.+.|-..|++.+|...|.+.
T Consensus 929 daAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 929 DAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 777777776553 445666777778888877766553 34555566777787888888888777665
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhH----------------HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 470 SIFGLVPDGFTFTSIIDGLCKLGKPEL----------------ANGFFGLMVKKGISPDEATITALADGHCKNGKTGEAL 533 (902)
Q Consensus 470 ~~~g~~~~~~~~~~li~~~~~~g~~~~----------------A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 533 (902)
.. +...|+.| +.+++++ |-++|++. |. -....+..|-+.|.+.+|+
T Consensus 994 qa---------fsnAIRlc-KEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kAL 1055 (1416)
T KOG3617|consen 994 QA---------FSNAIRLC-KENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKAL 1055 (1416)
T ss_pred HH---------HHHHHHHH-HhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHH
Confidence 42 33333332 2222222 22222221 11 1122334566777777666
Q ss_pred HHHHHH--------Hh--CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048778 534 MIFERM--------VQ--NTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAM 603 (902)
Q Consensus 534 ~~~~~~--------~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 603 (902)
++--+- +. .....|+...+...+.++...++++|..++-...+ |...+. +|+..+..--.
T Consensus 1056 elAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alq-lC~~~nv~vte 1125 (1416)
T KOG3617|consen 1056 ELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQ-LCKNRNVRVTE 1125 (1416)
T ss_pred HHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHH-HHhcCCCchhH
Confidence 542211 11 12335666777777777778888888777766554 222222 23333333333
Q ss_pred HHHHHHHH-CCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 604 SMIEVMKL-AGCPPNVH----TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDH 671 (902)
Q Consensus 604 ~~~~~m~~-~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 671 (902)
++-+.|.- ++-.|+.. ....+...|.++|.+..|.+-|.+.-++ ..-++++.+.|+.++
T Consensus 1126 e~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1126 EFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 33333321 11233333 3455667777888887777666554321 123455556666554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-07 Score=100.41 Aligned_cols=576 Identities=13% Similarity=0.023 Sum_probs=282.0
Q ss_pred hHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 048778 213 VRAGEMFFCRVLKHGFCLD-THICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLK 291 (902)
Q Consensus 213 ~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 291 (902)
...|...|-+..+.. ++ ...|..|...|+...+...|.+.|+..-+ -...|...+....+.|....+++.|..+.
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 444444444444432 22 34566666667666677777777777665 33455666777777777777777777763
Q ss_pred HHHHHCC-CCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 048778 292 DEMCEKG-WQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHF 370 (902)
Q Consensus 292 ~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 370 (902)
-..-+.. ...-...|....-.|...++...|..-|+...+..+. |...|..+..+|..+|++..|.++|.+.....
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 2222210 0001111222333445666777777777777665433 66677777777777777777777777766532
Q ss_pred CCHHHHH--HHHHHHHHcCChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------
Q 048778 371 PGVVTYN--VLINGYCKQGRIIAAFELLALMEKR------TCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVD------ 436 (902)
Q Consensus 371 ~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~------ 436 (902)
|+. +|. -.....|..|.+.+|...+...... +..--..++..+...+...|-..+|...+++-++
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 221 222 1223455677777777776665432 1111122222333333333433344444443322
Q ss_pred -CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---h---HHHHHHHHHHHCCC
Q 048778 437 -GGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKP---E---LANGFFGLMVKKGI 509 (902)
Q Consensus 437 -~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~~ 509 (902)
.....+...|-.+- .|..+|-... .+ .|+......+..-+-+.+.. + -+.+.+-.-.+.
T Consensus 706 ~h~~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl-- 771 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL-- 771 (1238)
T ss_pred HHhhhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--
Confidence 11111222222111 1222222222 11 12222222222112122211 1 111111111111
Q ss_pred CCCHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 048778 510 SPDEATITALADGHCK----N----GKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVP 581 (902)
Q Consensus 510 ~~~~~~~~~li~~~~~----~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 581 (902)
..+..+|..++..|.+ . .+...|...+++.++. ...+..+||.|.-. ...|++.-|...|-+-+... +.
T Consensus 772 ~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~ 848 (1238)
T KOG1127|consen 772 AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PT 848 (1238)
T ss_pred hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-cc
Confidence 1123344444433332 1 1223556666655553 22445555655443 55566666666665554322 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--H--HCCCCCCHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKM--F--DLGVSPNHITYS 657 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~--~~g~~p~~~~~~ 657 (902)
...+|..+.-.+.+..+++.|...|....... +-|...|..........|+.-++..+|..- . ..|-.++..-|.
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~ 927 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWL 927 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHH
Confidence 45667666666777778888888888777653 556666766666666777777777776652 1 233345555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcc
Q 048778 658 ILVRAHASTGRLDHAFKIVSFMVAN---------GCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDD 728 (902)
Q Consensus 658 ~l~~~~~~~g~~~~A~~~~~~m~~~---------g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (902)
+........|+.++-+...+++... +.+.+...|...+...-+
T Consensus 928 c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEh---------------------------- 979 (1238)
T KOG1127|consen 928 CATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEH---------------------------- 979 (1238)
T ss_pred HHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHH----------------------------
Confidence 5555566666665544333332210 122223333333333333
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCG------GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSI 801 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l 801 (902)
.+.+.+|.++..+++..- ..+.++--.+++.++..|.++.|..-+... |..+. ..+
T Consensus 980 -----------L~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~------~~evdEdi~ 1042 (1238)
T KOG1127|consen 980 -----------LEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKE------WMEVDEDIR 1042 (1238)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhccc------chhHHHHHh
Confidence 335555555555443321 222333445566666677777555443332 22222 111
Q ss_pred HH--HHHccCChHHHHHHHHHHHHcC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 802 IG--CYCKERKYDDCLEFMNLILESG-FVPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 802 ~~--~~~~~g~~~~A~~~~~~~~~~~-~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
.- +..-.|+++++.+.|+++...- -..+. .....++.+...+|..+.|...+-+....
T Consensus 1043 gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1043 GTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 11 1234677888888888877421 11221 33455566666777777777777665444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-09 Score=113.72 Aligned_cols=236 Identities=17% Similarity=0.158 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLA-----G-CPPNVH-TYTVIINGLCQRGRFKEAEMLLFKMFD-----LGV- 649 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~- 649 (902)
..+...+...|...|+++.|..+++..++. | ..|... ..+.+...|...+++++|..+|+++.. .|-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445555778888888888888888877653 2 133333 334477788999999999999999873 231
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CH-HHHHHHHHHHHhcCCcCCccccccccCCCCCCC
Q 048778 650 SPN-HITYSILVRAHASTGRLDHAFKIVSFMVAN-----GCQL-NS-NVYSALLAGLVSSNKASGVLSISTSCHSDAGSS 721 (902)
Q Consensus 650 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~~~-~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (902)
.|. ..+++.|..+|++.|++++|...+++..+- |..+ .. ..++.++..++..+
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~------------------- 339 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN------------------- 339 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc-------------------
Confidence 121 456777888899999999999988887641 2121 22 23444555566666
Q ss_pred CCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC-----C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--
Q 048778 722 RLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG-----G---STTDFYNFLVVELCRAGRIVEADRIMKDIMKSG-- 791 (902)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 791 (902)
++++|..++++..+.- + .-..++..|+..|...|++++|.++|++++...
T Consensus 340 --------------------~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 340 --------------------EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred --------------------chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 8888887777765542 2 335689999999999999999999999997431
Q ss_pred ----CCchHhH--HHHHHHHHccCChHHHHHHHHHHHH----cCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 792 ----VFPAKAI--TSIIGCYCKERKYDDCLEFMNLILE----SGF-VPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 792 ----~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
..+.... +.++..|.+.+++++|.++|.+... .|. .|+. .+|..|+..|...|++++|+++.+..+
T Consensus 400 ~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 400 LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1222222 8899999999999999999987763 232 2443 888999999999999999999999875
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-06 Score=89.82 Aligned_cols=384 Identities=15% Similarity=0.070 Sum_probs=195.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 048778 177 LGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFD 256 (902)
Q Consensus 177 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 256 (902)
++.+|..+|-+-. .-...+..|....++++|..+-+ ..|.+.=...-.+.+..+...|.-++|-++-+
T Consensus 546 kfk~ae~ifleqn---------~te~aigmy~~lhkwde~i~lae---~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~ 613 (1636)
T KOG3616|consen 546 KFKEAEMIFLEQN---------ATEEAIGMYQELHKWDEAIALAE---AKGHPALEKLKRSYLQALMDTGQDEKAAELKE 613 (1636)
T ss_pred hhhHHHHHHHhcc---------cHHHHHHHHHHHHhHHHHHHHHH---hcCChHHHHHHHHHHHHHHhcCchhhhhhhcc
Confidence 5666666664321 11344556666677777776543 23323223334556666667777666655421
Q ss_pred HhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 048778 257 VMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKP 336 (902)
Q Consensus 257 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 336 (902)
. +-.+ -+.|+.|.+.|.+-+|......-.. +..|......+..++.+..-++.|-.+|+.+..-
T Consensus 614 s---------dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~---- 677 (1636)
T KOG3616|consen 614 S---------DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---- 677 (1636)
T ss_pred c---------cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH----
Confidence 1 1111 2356778888888777665422111 2234444444555555555566666666655421
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048778 337 NAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTY-NVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELM 415 (902)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li 415 (902)
...+..|-+-.-+.+|.++-+-.. +..+++. ......+...|+++.|..-|-+.. .....+
T Consensus 678 -----dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kai 739 (1636)
T KOG3616|consen 678 -----DKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAI 739 (1636)
T ss_pred -----HHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHH
Confidence 122233333333445554433221 1111111 112233445566666655554332 122234
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 048778 416 EGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPE 495 (902)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 495 (902)
.+......+.+|+.+++.+.++.. -..-|..+.+-|+..|+++.|.++|-+.- .++..|.+|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 455556666777777766655422 22345555666677777777777665432 2445566677777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048778 496 LANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKIL 575 (902)
Q Consensus 496 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (902)
.|.++-.+.. |.......|.+-..-+-+.|++.+|.+++-.+.. |+ ..|.+|-+.|..+..+++..+--
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 7766654433 2333445555555556666777776666644432 33 24566666666666665554432
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048778 576 KFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEML 640 (902)
Q Consensus 576 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 640 (902)
.. .-..|...+..-|-..|++..|...|-+.-+ |...++.|...+.|++|.++
T Consensus 878 ~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 878 GD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred hh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 10 1122334445555566666666665544322 34445555555555555544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.7e-12 Score=89.59 Aligned_cols=50 Identities=44% Similarity=0.903 Sum_probs=38.3
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHh
Q 048778 266 PNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCD 315 (902)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 315 (902)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+++|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.3e-10 Score=105.24 Aligned_cols=233 Identities=15% Similarity=0.110 Sum_probs=172.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHH
Q 048778 517 TALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVT-YTILVDGLFR 595 (902)
Q Consensus 517 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~ 595 (902)
.-+..+|.+.|...+|.+.|+..++. .|-+.||-.|-..|.+..+++.|+.++.+-++. .|-.+| ...+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 45667778888888888888777664 356667777778888888888888888777763 344444 3445666777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048778 596 AGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKI 675 (902)
Q Consensus 596 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 675 (902)
.++.++|.++|+...+.. +.++.....+..+|.-.++.+-|+.+++.+++.| ..+...|..+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 788888888888887763 5566666667777777888888888888888887 45777788888888888888888888
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHH
Q 048778 676 VSFMVANGCQLN--SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRI 753 (902)
Q Consensus 676 ~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 753 (902)
|++....--.|+ ..+|..+.......| ++.-|.+.|+-+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iG---------------------------------------D~nlA~rcfrla 421 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIG---------------------------------------DFNLAKRCFRLA 421 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEecc---------------------------------------chHHHHHHHHHH
Confidence 887776433343 345555555444555 888899999888
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 754 ESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 754 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
+..++.+..+++.|+-.-.+.|++++|..+++.+.. +.|+-
T Consensus 422 L~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--~~P~m 462 (478)
T KOG1129|consen 422 LTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS--VMPDM 462 (478)
T ss_pred hccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--hCccc
Confidence 888888888899988888888899999888888877 44543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-07 Score=94.35 Aligned_cols=305 Identities=13% Similarity=0.086 Sum_probs=222.9
Q ss_pred CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048778 509 ISPDEATITALADGH--CKNGKTGEALMIFERMVQN-TDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVT 585 (902)
Q Consensus 509 ~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 585 (902)
.+|...+...-+.++ +-.++...|...+-..... ....+......+...+...|+.++|...|++... +.|+..+
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhh
Confidence 344444444444443 3445555555444443333 3455677788889999999999999999998875 2343222
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 586 -YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHA 664 (902)
Q Consensus 586 -~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 664 (902)
.....-.+.+.|++++...+...+.... .-....|..-.......++++.|+.+-++.++.. +.+...|..-...+.
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLI 345 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHH
Confidence 2222333467888888888888877642 2333445555555667788999999999888765 456777777788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccH
Q 048778 665 STGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDV 743 (902)
Q Consensus 665 ~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (902)
..|+.++|.-.|+..+. +.| +...|..|+.+|...+ ++
T Consensus 346 ~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~---------------------------------------~~ 384 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQK---------------------------------------RF 384 (564)
T ss_pred hccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhc---------------------------------------hH
Confidence 99999999999998876 455 6788999999998888 99
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 744 EHAFRLRDRIESCGGSTTDFYNFLV-VELC-RAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 744 ~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
.||.-.-+...+.-|.+..++..++ ..+. ..-.-++|..++++.+. +.|+-.- ..++..+...|.++.++.+++
T Consensus 385 kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9999888888887788888888775 3332 22346889999999887 5676555 888888999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 820 LILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 820 ~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
+.+.. -||......+++.+...+.+++|.+.|..+++.++.
T Consensus 463 ~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 463 KHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 98873 688888889999999999999999999998777654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-07 Score=97.32 Aligned_cols=415 Identities=12% Similarity=0.060 Sum_probs=237.6
Q ss_pred HHHHHHHHHhhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CC-------CCCHHHHHHHHHHHHhcCChH
Q 048778 143 ILKLIVALDGLSKDGFKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLIAD-GF-------VLSAIDYRSVINALCKSGLVR 214 (902)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-g~-------~~~~~~~~~ll~~~~~~~~~~ 214 (902)
++.|.+....++ +..+|..|.+.+++.++.+-|.-.+-.|... |. ..+..+-.-+...-...|.++
T Consensus 744 MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlE 817 (1416)
T KOG3617|consen 744 MDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLE 817 (1416)
T ss_pred HHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHH
Confidence 556666555555 5578999999999999999888777766432 10 111122222223335679999
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048778 215 AGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEM 294 (902)
Q Consensus 215 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 294 (902)
+|..+|.+-.+. ..|=..|-..|.+++|.++-+.-..- .=..||..-..-+-..++.+.|++.|++.
T Consensus 818 eA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi----HLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 818 EALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI----HLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce----ehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 999999987764 33445677789999999988754431 22346666666677788899999988864
Q ss_pred HHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH
Q 048778 295 CEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVV 374 (902)
Q Consensus 295 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 374 (902)
... -...+. |+. .+.....+..+.+. |...|.-....+-..|+++.|+.+|.....
T Consensus 885 ~~h----afev~r-mL~-----e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------- 940 (1416)
T KOG3617|consen 885 GVH----AFEVFR-MLK-----EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD-------- 940 (1416)
T ss_pred CCh----HHHHHH-HHH-----hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh--------
Confidence 221 111111 111 11122222222222 344555555555566777777777766543
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C------CCChhhH
Q 048778 375 TYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGG--L------FPDEITY 446 (902)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g--~------~~~~~~~ 446 (902)
|-++++..|-+|+.++|-++-++- -|....-.|.+.|-..|++.+|...|.+...-. + ..+...+
T Consensus 941 -~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 941 -YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred -hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 556667777777777777665542 245555566677777777777777776654310 0 0011111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH--------HHH--CCCCCCHHHH
Q 048778 447 NILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGL--------MVK--KGISPDEATI 516 (902)
Q Consensus 447 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~--~~~~~~~~~~ 516 (902)
|. ...+...+.-.|-++|++..- -+...+..|-+.|.+.+|+++--+ ++. .....|+...
T Consensus 1014 nl--al~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1014 NL--ALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred HH--HhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence 10 011112233334444444321 011223356667776666654311 111 2234577888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCH----HHHHHHHH
Q 048778 517 TALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILK-FGLVPSV----VTYTILVD 591 (902)
Q Consensus 517 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~----~~~~~li~ 591 (902)
+...+.++...++++|..++-...+ |...+ .+|+..++.-..++-+.|.- ..-.|+. .....+..
T Consensus 1084 ~RcadFF~~~~qyekAV~lL~~ar~---------~~~Al-qlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLARE---------FSGAL-QLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHH-HHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence 8888888888899998888766554 22222 34444555444444444431 1122333 34566778
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 592 GLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKE 636 (902)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 636 (902)
.|.++|.+..|-+-|.+.=++ ...++++.+.|+.++
T Consensus 1154 ~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 889999999998888765332 234677778887765
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-09 Score=103.91 Aligned_cols=225 Identities=13% Similarity=0.099 Sum_probs=101.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 587 TILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAST 666 (902)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 666 (902)
+.+..+|.+.|.+.+|.+.++..++. .|-..||..|-+.|.+..+...|+.++.+-.+. .+-|+....-..+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34444555555555555555544443 344444555555555555555555555544443 122222223334444444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHH
Q 048778 667 GRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHA 746 (902)
Q Consensus 667 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 746 (902)
++.++|.++|+...+. .+.+.....++...|.-.+ +.+-|
T Consensus 304 ~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~---------------------------------------~PE~A 343 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDN---------------------------------------NPEMA 343 (478)
T ss_pred HhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCC---------------------------------------ChHHH
Confidence 5555555555554432 1112222222222222222 45555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 747 FRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
.+.|+++++.+..++..|..++-++.-.++++-++..|++++...-.|+... .+++......|++.-|.+.|+-.+.
T Consensus 344 lryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 344 LRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 5555555555544555555555444444555555555555544333333322 4444444455555555555554443
Q ss_pred cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 824 SGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 824 ~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
. +|+ .+.++.++-.-.+.|+.++|..+++.+
T Consensus 424 ~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 424 S--DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred c--CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 2 222 244444444444555555555555444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.2e-10 Score=101.14 Aligned_cols=157 Identities=11% Similarity=0.036 Sum_probs=136.1
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDC 814 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A 814 (902)
+...|+...|..-++++++.+|.+..+|..++..|.+.|..+.|.+.|++++. +.|+... ++.++.+|..|++++|
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCCChHHH
Confidence 34444999999999999999999999999999999999999999999999999 6676665 9999999999999999
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 815 LEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
...|+++.....-|. ..+|..++.|-.+.|+.+.|..++++.++....... ....+...+++.|++..|...++....
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~-~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP-ALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh-HHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 999999997322222 378888999999999999999999999888765443 445788889999999999999998877
Q ss_pred cCc
Q 048778 894 VHY 896 (902)
Q Consensus 894 ~~~ 896 (902)
+|.
T Consensus 202 ~~~ 204 (250)
T COG3063 202 RGG 204 (250)
T ss_pred ccc
Confidence 764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-09 Score=114.58 Aligned_cols=237 Identities=14% Similarity=0.110 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-
Q 048778 618 VHTYTVIINGLCQRGRFKEAEMLLFKMFDL-----G-VSPNHIT-YSILVRAHASTGRLDHAFKIVSFMVAN-----GC- 684 (902)
Q Consensus 618 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~- 684 (902)
..+...+...|...|+++.|+.+++..++. | ..|...+ .+.+...|...+++++|..+|+++..- |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 357777999999999999999999988753 2 1344333 344788899999999999999999852 21
Q ss_pred CCC-HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc-------
Q 048778 685 QLN-SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC------- 756 (902)
Q Consensus 685 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------- 756 (902)
.|. ..+++.|...|.+.| ++++|...++++.+.
T Consensus 279 h~~va~~l~nLa~ly~~~G---------------------------------------Kf~EA~~~~e~Al~I~~~~~~~ 319 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQG---------------------------------------KFAEAEEYCERALEIYEKLLGA 319 (508)
T ss_pred CHHHHHHHHHHHHHHhccC---------------------------------------ChHHHHHHHHHHHHHHHHhhcc
Confidence 221 346677777888888 555555555444333
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCchHh----H-HHHHHHHHccCChHHHHHHHHHHHHc---
Q 048778 757 G-GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS---GVFPAKA----I-TSIIGCYCKERKYDDCLEFMNLILES--- 824 (902)
Q Consensus 757 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~----~-~~l~~~~~~~g~~~~A~~~~~~~~~~--- 824 (902)
. |.-...+..++..++..+++++|..++++..+. -+.++++ + ..|++.|.+.|++++|.+++++++..
T Consensus 320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 3 233445778888899999999999999987642 2334441 1 89999999999999999999999842
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCc-chhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 825 ---GFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRY----NG-IEE-KAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 825 ---~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
+..+. ...++.++..|.+.+++++|..+|.+.... |+ .|+ ..+|..|...|.+.|+++.|+++.+.+..
T Consensus 400 ~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 400 LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 11233 367788999999999999999998885422 22 223 44678888999999999999999988763
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.2e-07 Score=92.68 Aligned_cols=147 Identities=14% Similarity=0.086 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 048778 528 KTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFG--------KILKFGLVPSVVTYTILVDGLFRAGNI 599 (902)
Q Consensus 528 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~li~~~~~~g~~ 599 (902)
...++..++....+........+.-..+......|+++.|.+++. .+.+.+..|-.+ .++...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCC
Confidence 355566666665554333334455555666667777777777777 444444444433 3345556666665
Q ss_pred HHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 600 ALAMSMIEVMKLA--GCPPNV----HTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAF 673 (902)
Q Consensus 600 ~~A~~~~~~m~~~--~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 673 (902)
+.|..++.+.... .-.+.. .++..+...-.+.|+.++|..+++++.+.. ++|..+...++.+|++. +.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 5566666555431 001111 223333333345677777777777777654 56777777777777765 556665
Q ss_pred HHHHH
Q 048778 674 KIVSF 678 (902)
Q Consensus 674 ~~~~~ 678 (902)
.+-..
T Consensus 512 ~l~k~ 516 (652)
T KOG2376|consen 512 SLSKK 516 (652)
T ss_pred HHhhc
Confidence 55444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-07 Score=99.05 Aligned_cols=129 Identities=16% Similarity=0.099 Sum_probs=97.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048778 550 VLNSFLDVLCKENKLKEEYAMFGKILKFGLVPS-VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGL 628 (902)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 628 (902)
++.-+...|...|++++|++++++.++. .|+ +..|..-...+-+.|++.+|.+.++.....+ .-|...-+-.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHH
Confidence 4455667777888888998888888874 455 6678888888889999999999988888765 44666666777888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH------H--HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 629 CQRGRFKEAEMLLFKMFDLGVSPNHI------T--YSILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 629 ~~~g~~~~A~~~~~~m~~~g~~p~~~------~--~~~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
.+.|++++|.+++......+..|-.. . ......+|.+.|++..|++.|....+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88899999999888887665433321 1 13456788888999888887777664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.6e-07 Score=98.01 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
-+++|.++++.+.+..|.+..+|..--..|.+.|++-.|++.+.+
T Consensus 472 PLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 472 PLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 667888888888888888888888888888888888887776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.8e-11 Score=85.71 Aligned_cols=49 Identities=55% Similarity=0.978 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048778 371 PGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLC 419 (902)
Q Consensus 371 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~ 419 (902)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.1e-09 Score=107.41 Aligned_cols=222 Identities=10% Similarity=-0.095 Sum_probs=162.9
Q ss_pred HHcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048778 594 FRAGNIALAMSMIEVMKLAG-CPPN--VHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLD 670 (902)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 670 (902)
...+..+.++.-+.+++... ..|+ ...|..+...|...|+.++|...|++.++.. +.+...|+.+...+...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 34567788999998888642 2222 3568888888999999999999999999865 556889999999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHH
Q 048778 671 HAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRL 749 (902)
Q Consensus 671 ~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 749 (902)
+|...+++.++ +.| +..+|..+...+...| ++++|.+.
T Consensus 116 ~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g---------------------------------------~~~eA~~~ 154 (296)
T PRK11189 116 AAYEAFDSVLE--LDPTYNYAYLNRGIALYYGG---------------------------------------RYELAQDD 154 (296)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCC---------------------------------------CHHHHHHH
Confidence 99999999997 456 4567777777788888 99999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHc---C-
Q 048778 750 RDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILES---G- 825 (902)
Q Consensus 750 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~- 825 (902)
+++.++.+|.++.. ......+...++.++|++.+++.... ..|+.... ...+...|+..++ +.++.+.+. .
T Consensus 155 ~~~al~~~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~--~~~~~~lg~~~~~-~~~~~~~~~~~~~~ 229 (296)
T PRK11189 155 LLAFYQDDPNDPYR-ALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW--NIVEFYLGKISEE-TLMERLKAGATDNT 229 (296)
T ss_pred HHHHHHhCCCCHHH-HHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH--HHHHHHccCCCHH-HHHHHHHhcCCCcH
Confidence 99999998888732 22222344567899999999776542 22322212 3334446666554 355555421 1
Q ss_pred -CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 826 -FVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 826 -~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
+.| ..+.|..++..+.+.|++++|+..|+++++..+.
T Consensus 230 ~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 230 ELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 112 2378899999999999999999999999877643
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-08 Score=105.74 Aligned_cols=219 Identities=16% Similarity=0.014 Sum_probs=145.7
Q ss_pred hcCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 560 KENKLKEEYAMFGKILKFG-LVPS--VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKE 636 (902)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 636 (902)
..+..+.++.-+.+++... ..|+ ...|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3466777888888877532 2222 3457777778888899999999888888864 4567788888888889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCC
Q 048778 637 AEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHS 716 (902)
Q Consensus 637 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 716 (902)
|...|++..+.. +-+..+|..++.++...|++++|.+.+++..+. .|+..........+...+
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~-------------- 179 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKL-------------- 179 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccC--------------
Confidence 999988888753 334677788888888889999999999888863 454322111111122333
Q ss_pred CCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--
Q 048778 717 DAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS---G-- 791 (902)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-- 791 (902)
+.++|.+.+++.....+++... ....+...|+..++ +.++.+.+. .
T Consensus 180 -------------------------~~~~A~~~l~~~~~~~~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~ 230 (296)
T PRK11189 180 -------------------------DPKQAKENLKQRYEKLDKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTE 230 (296)
T ss_pred -------------------------CHHHHHHHHHHHHhhCCccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHH
Confidence 7888888887766543333222 23334445665544 344444421 1
Q ss_pred CCchHh-H-HHHHHHHHccCChHHHHHHHHHHHHcC
Q 048778 792 VFPAKA-I-TSIIGCYCKERKYDDCLEFMNLILESG 825 (902)
Q Consensus 792 ~~p~~~-~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 825 (902)
+.|+.. . ..++..+.+.|++++|...|+++++.+
T Consensus 231 l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 231 LAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 112222 2 778888889999999999999888754
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.8e-09 Score=94.53 Aligned_cols=190 Identities=14% Similarity=0.054 Sum_probs=115.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhh
Q 048778 656 YSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSS 734 (902)
Q Consensus 656 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (902)
..-|.-.|.+.|++..|.+-+++.++. .| +..+|..+...|.+.|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~G-------------------------------- 83 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLG-------------------------------- 83 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcC--------------------------------
Confidence 344555666677777777777776663 44 3456666666666666
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
..+.|.+.|+++++..|.+..++|..+..+|..|++++|...|+++...-.-+.... .+++.|-.+.|+.+
T Consensus 84 -------e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~ 156 (250)
T COG3063 84 -------ENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFD 156 (250)
T ss_pred -------ChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCch
Confidence 667777777777777777777777777777777777777777777765432222222 56666666777777
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHH
Q 048778 813 DCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLN 889 (902)
Q Consensus 813 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~ 889 (902)
.|..++++.++. .|+ +.....++....+.|++-.|..++++....+. +........+..-...|+.+.+.+.=.
T Consensus 157 ~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 157 QAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred hHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 777777777664 343 24555566666677777777777766654443 444333333344445566665554433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-06 Score=89.13 Aligned_cols=435 Identities=13% Similarity=0.039 Sum_probs=230.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 048778 276 HGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKID 355 (902)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (902)
.+.+..|+++.|+.+|-+....... |.+.|+.-..+|.+.|++++|++=-.+-++..+. -...|+....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccHH
Confidence 4456677888888888777765433 6677777777788888887777666555544221 3566777777777777888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHH
Q 048778 356 EANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELM-----EGLCRMNKSYKAVHL 430 (902)
Q Consensus 356 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li-----~~~~~~g~~~~A~~~ 430 (902)
+|..-|.+-++... .+...++.+..++. .+.+. +... -+...|..+. +.+...-.+ ..+
T Consensus 88 eA~~ay~~GL~~d~-~n~~L~~gl~~a~~----~~~~~-----~~~~---~~p~~~~~l~~~p~t~~~~~~~~~---~~~ 151 (539)
T KOG0548|consen 88 EAILAYSEGLEKDP-SNKQLKTGLAQAYL----EDYAA-----DQLF---TKPYFHEKLANLPLTNYSLSDPAY---VKI 151 (539)
T ss_pred HHHHHHHHHhhcCC-chHHHHHhHHHhhh----HHHHh-----hhhc---cCcHHHHHhhcChhhhhhhccHHH---HHH
Confidence 88887777776532 24555555555551 11111 1100 0111111111 111111111 111
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HHhCC-------CCCCHHHHHHHHHHHHhcCChhHHH
Q 048778 431 LKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNS-----MSIFG-------LVPDGFTFTSIIDGLCKLGKPELAN 498 (902)
Q Consensus 431 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-----m~~~g-------~~~~~~~~~~li~~~~~~g~~~~A~ 498 (902)
+..... + |.. +..|.....+..|.-.+.. +...| ..|. .+.. ...
T Consensus 152 l~~~~~-~--p~~------l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-----------~~~~---~~~ 208 (539)
T KOG0548|consen 152 LEIIQK-N--PTS------LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-----------KQEH---NGF 208 (539)
T ss_pred HHHhhc-C--cHh------hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-----------cccC---CCC
Confidence 111111 1 100 0111110001111111000 00000 0110 0000 000
Q ss_pred HHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048778 499 GFFGLMVK-KGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKF 577 (902)
Q Consensus 499 ~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (902)
....++.+ ....--..-...+.++..+..++..|.+.+....+.. .+..-++....+|...|.+.++.......++.
T Consensus 209 ~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~ 286 (539)
T KOG0548|consen 209 PIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV 286 (539)
T ss_pred CccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH
Confidence 00000000 0000011224456666667777778888777777653 44445566667777777777777666665554
Q ss_pred CCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 048778 578 GLVPSVVTYTI-------LVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVS 650 (902)
Q Consensus 578 ~~~p~~~~~~~-------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 650 (902)
|.. ...-|+. +..+|.+.++++.|+..|.+.+.....|+.. .+....+++.+..+...-. .
T Consensus 287 gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~--~ 354 (539)
T KOG0548|consen 287 GRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYI--N 354 (539)
T ss_pred hHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhh--C
Confidence 422 1222222 2335566677788888887766544344332 2223344444444444332 2
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcch
Q 048778 651 PNH-ITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDD 729 (902)
Q Consensus 651 p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (902)
|.. .-...-.+.+.+.|++..|+..|.+++... +.|...|.....+|.+.+
T Consensus 355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~--------------------------- 406 (539)
T KOG0548|consen 355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLG--------------------------- 406 (539)
T ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHh---------------------------
Confidence 332 112223666778888888888888888753 446677777777777777
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHc
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCK 807 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~ 807 (902)
.+..|+.-.+..++++|+....|..-+.++....+|++|++.|++.++. .|+..- ..+.+++..
T Consensus 407 ------------~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 407 ------------EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVEA 472 (539)
T ss_pred ------------hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888873 354443 555555554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.9e-07 Score=92.96 Aligned_cols=438 Identities=11% Similarity=0.034 Sum_probs=249.9
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCH
Q 048778 381 NGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPD-EITYNILVDGFCREGQL 459 (902)
Q Consensus 381 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~ 459 (902)
++.+..|+++.|+..|.+..... ++|.+.|+.-..+|.+.|++++|++=-.+-.+. .|+ ...|+-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 56678899999999999988775 348889999999999999999998877776663 343 56788888888889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhc-------
Q 048778 460 DIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKP---ELANGFFGLMVKKG---ISPDEATITALADGHCKN------- 526 (902)
Q Consensus 460 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~------- 526 (902)
++|+.-|.+-++.. +.|...++-+..++...... -.--.++..+.... .......|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999888764 45666677777666111000 00001111111000 000111122222221110
Q ss_pred ---CCHHHHHHHHHHHH-----hCCCCCChhhHHHHHHHHHhcCChh----HHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 048778 527 ---GKTGEALMIFERMV-----QNTDLKTPHVLNSFLDVLCKENKLK----EEYAMFGKILK-FGLVPSVVTYTILVDGL 593 (902)
Q Consensus 527 ---g~~~~A~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~-~~~~p~~~~~~~li~~~ 593 (902)
..+..+...+.... ..+..+.+. ...+. .......++.+ ....--..-+-.+.++.
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~-----------~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILAS-----------MAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCC-----------CCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 00111111110000 000000000 00000 00000000000 00000111234556666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhc
Q 048778 594 FRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYS-------ILVRAHAST 666 (902)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-------~l~~~~~~~ 666 (902)
.+..+++.|++.+....+.. -+..-++....+|...|.+.+....-....+.| .-...-|+ .+..+|.+.
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhhhhhhhH
Confidence 67777777777777776653 344445555666777777776666666655544 12222222 233455666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCC-cchhhhhhhhhhhhccHHH
Q 048778 667 GRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHD-DDDYERSSKNFLREMDVEH 745 (902)
Q Consensus 667 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 745 (902)
++++.|+.++++.+..--.|+...-.....--.+.+.. .. -+.+. .+.-...+..+++.|++..
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~---~a------------~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAER---KA------------YINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHH---HH------------hhChhHHHHHHHHHHHHHhccCHHH
Confidence 77777888887776544444433222211111111100 00 00011 1111223566777889999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 746 AFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 746 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
|++.|.++++.+|.|...|...+-+|.+.|.+..|+.-.+..++ +.|+... ..=+.++....++++|.+.|...++
T Consensus 377 Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998 5576655 5557778888899999999999988
Q ss_pred cCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 824 SGFVPSF-ESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 824 ~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
. +|+. +....+.+++......+...++.++
T Consensus 455 ~--dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 455 L--DPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred c--CchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 5 5754 5556666666543333334444444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-06 Score=84.13 Aligned_cols=314 Identities=13% Similarity=0.107 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-H
Q 048778 478 GFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITAL---ADGHCKNGKTGEALMIFERMVQNTDLKTPHVLN-S 553 (902)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ 553 (902)
+.-..-+...+...|++..|+.-|....+- |+..|.++ ...|...|+...|+.=+.+.++. +||-..-. .
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 333444555566666666666666666554 33333333 33555666666666666666552 34322111 1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 554 FLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGR 633 (902)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 633 (902)
-...+.+.|.+++|..=|+..++.. |+..+ ...++.+.-..++-. .....+..+...|+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGD 170 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCc
Confidence 1234556666666666666666532 21100 000000000000000 01112223344556
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccc
Q 048778 634 FKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTS 713 (902)
Q Consensus 634 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 713 (902)
...|+.....+++.. +.|...|..-..+|...|++..|+.-++...+.. ..+.....-+-..+...|
T Consensus 171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vg----------- 237 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVG----------- 237 (504)
T ss_pred hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhh-----------
Confidence 666666666665543 4555556666666666666666655544444321 112222222333333333
Q ss_pred cCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHhcCCHHHHH
Q 048778 714 CHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFL------------VVELCRAGRIVEAD 781 (902)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~ 781 (902)
+.+.++...++.++.+|..-.+|-.. +....+.++|.+++
T Consensus 238 ----------------------------d~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cl 289 (504)
T KOG0624|consen 238 ----------------------------DAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECL 289 (504)
T ss_pred ----------------------------hHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 66666666666666655554332211 11234456677777
Q ss_pred HHHHHHHHcCCCchHhH----HHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 782 RIMKDIMKSGVFPAKAI----TSIIGCYCKERKYDDCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 782 ~~~~~~~~~~~~p~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
+..++.++..+.-..+. ..+-.||...|++.+|++.-.+.++ +.|| ..++..-+.+|.-...+++|+.-|+.+
T Consensus 290 e~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 290 EAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred HHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 77777766432211111 3445566677777777777777766 3554 566666777777777777777777776
Q ss_pred HhCCC
Q 048778 857 FRYNG 861 (902)
Q Consensus 857 ~~~~~ 861 (902)
.+...
T Consensus 368 ~e~n~ 372 (504)
T KOG0624|consen 368 LELNE 372 (504)
T ss_pred HhcCc
Confidence 55543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.7e-05 Score=83.92 Aligned_cols=149 Identities=12% Similarity=0.016 Sum_probs=92.4
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLI 821 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~ 821 (902)
.+-+|+.+++..+...|.|...-..|+..|+-.|-+..|.++|+.+--+.+.-|.....+..-+...|++..+...++..
T Consensus 454 ~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~ 533 (932)
T KOG2053|consen 454 DLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEH 533 (932)
T ss_pred HHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHH
Confidence 66788888888888888888888888999988899999999998886655655554466777777888888888888776
Q ss_pred HHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH---HHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHH
Q 048778 822 LESGFVPS-FESHCTVIQGLQSEGRNKQAKNLV---SDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLID 892 (902)
Q Consensus 822 ~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 892 (902)
.+. +..+ -++-..++.+| +.|.+.+-.++. +++...-..-...+-...++.+...++.++-...+..|.
T Consensus 534 lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 534 LKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 642 1111 12223333334 566665554443 332211111112222333444555666666555555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.7e-06 Score=79.96 Aligned_cols=204 Identities=8% Similarity=0.001 Sum_probs=94.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 559 CKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAE 638 (902)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 638 (902)
...|+...|+.....+++- .+-|...|..-..+|...|++..|+.-++...+.. ..+..++.-+-..+...|+.+.++
T Consensus 166 ~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred hcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHH
Confidence 3445566666666666553 12345555555666666666666665555554432 334445555555556666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCC
Q 048778 639 MLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDA 718 (902)
Q Consensus 639 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 718 (902)
...++.++. .||....-.. | ..+.+..+.++.|.+. +. ...|..-+....+.-+.+.
T Consensus 244 ~~iRECLKl--dpdHK~Cf~~---Y---KklkKv~K~les~e~~-ie--~~~~t~cle~ge~vlk~ep------------ 300 (504)
T KOG0624|consen 244 KEIRECLKL--DPDHKLCFPF---Y---KKLKKVVKSLESAEQA-IE--EKHWTECLEAGEKVLKNEP------------ 300 (504)
T ss_pred HHHHHHHcc--CcchhhHHHH---H---HHHHHHHHHHHHHHHH-Hh--hhhHHHHHHHHHHHHhcCC------------
Confidence 666666553 3443322111 1 1222223333333321 11 1122221211111110000
Q ss_pred CCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 719 GSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
......-.....+-.++...+++-+|++.-.++++.+|.|..++..-+.+|.-..++++|+.-|+++.+
T Consensus 301 --~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 301 --EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred --cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 000000011111222233455666666666666666666666666666666666666666666666665
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.7e-08 Score=99.45 Aligned_cols=88 Identities=11% Similarity=0.038 Sum_probs=56.6
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCC
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERK 810 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~ 810 (902)
++..|...|++++|...|+.++...|.|...|+.|+..++...+.++|+..|.++++ ++|.-+- ..|+-+|...|.
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGA 513 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhh
Confidence 333333344666677777766666666666677776666666666677777766666 5565554 666666666666
Q ss_pred hHHHHHHHHHHH
Q 048778 811 YDDCLEFMNLIL 822 (902)
Q Consensus 811 ~~~A~~~~~~~~ 822 (902)
++||.+.|-.++
T Consensus 514 ykEA~~hlL~AL 525 (579)
T KOG1125|consen 514 YKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHHH
Confidence 666666666555
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-06 Score=92.62 Aligned_cols=259 Identities=12% Similarity=0.109 Sum_probs=127.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 048778 592 GLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ----RGRFKEAEMLLFKMFDLGVSPN-HITYSILVRAHAST 666 (902)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 666 (902)
.+...|++++|.+.+++..+.. +.|...+.. ...+.. .+..+.+.+.+.. . ....|+ ......+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-W-APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-c-CcCCCCcHHHHHHHHHHHHHc
Confidence 3455666666666666666542 333333332 112222 2333444444333 1 111222 33334455566667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHH
Q 048778 667 GRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHA 746 (902)
Q Consensus 667 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 746 (902)
|++++|...+++..+.. +.+...+..+...+...| ++++|
T Consensus 128 G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g---------------------------------------~~~eA 167 (355)
T cd05804 128 GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG---------------------------------------RFKEG 167 (355)
T ss_pred CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC---------------------------------------CHHHH
Confidence 77777777777776631 223445555666666666 77777
Q ss_pred HHHHHHHHhcCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH----H-HHHHHHHccCChHHHHHH
Q 048778 747 FRLRDRIESCGGSTT----DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI----T-SIIGCYCKERKYDDCLEF 817 (902)
Q Consensus 747 ~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~-~l~~~~~~~g~~~~A~~~ 817 (902)
...+++.+...|.++ ..|..++..+...|++++|+.+++++......+.... . .+..-+...|....+.+.
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w 247 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW 247 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH
Confidence 777777666553221 2345667777777777777777777654221111111 1 333334444433333322
Q ss_pred HHHHHHc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---Cc---chhHHHHH--HHHhcCCcHhHH
Q 048778 818 MNLILES--GFVPS---FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI---EE---KAAVLPYI--EFLLTGDELGKS 884 (902)
Q Consensus 818 ~~~~~~~--~~~p~---~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~---~~---~~~~~~l~--~~~~~~g~~~~a 884 (902)
+.+... ...|. .......+.++...|+.++|...++.+...... .. ..+...++ -.+...|++++|
T Consensus 248 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A 326 (355)
T cd05804 248 -EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATA 326 (355)
T ss_pred -HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHH
Confidence 111110 00011 122224556667777777777777776443221 00 01111122 234567777777
Q ss_pred HHHHHHHHhcC
Q 048778 885 IDLLNLIDQVH 895 (902)
Q Consensus 885 ~~~l~~~~~~~ 895 (902)
.+.+.+....+
T Consensus 327 ~~~L~~al~~a 337 (355)
T cd05804 327 LELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHH
Confidence 77777766543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.9e-07 Score=84.16 Aligned_cols=315 Identities=12% Similarity=0.085 Sum_probs=166.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHH-HHHHH
Q 048778 200 YRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTT-LIHGL 278 (902)
Q Consensus 200 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~-li~~~ 278 (902)
+.+++..+.+..++..|.+++..-.+.. +.+....+.|..+|....++..|-..++.+... .|...-|.. -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHH
Confidence 4455555555555666665555444432 224445555666666666666666666666542 344443322 23455
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 048778 279 CEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKA--LCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDE 356 (902)
Q Consensus 279 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 356 (902)
.+.+.+.+|+++...|.+. |+...-..-+.+ ....+++..+..+.++....| +..+.+.......+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 6677777777777666543 222222222222 234566666766666655322 33444444455567777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHH
Q 048778 357 ANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRT----YNELMEGLCRMNKSYKAVHLLK 432 (902)
Q Consensus 357 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t----~~~li~~~~~~g~~~~A~~~~~ 432 (902)
|.+-|+...+-|--.....||..+.. .+.|+++.|++...++.++|++-.... -...++.- ..|+. ..+..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh~ 237 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLHQ 237 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHHH
Confidence 77777777664333345556654443 356777777777777777765411100 00000000 00000 00000
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 048778 433 RVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFG-LVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISP 511 (902)
Q Consensus 433 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 511 (902)
.. -+..+|.-...+.+.|+++.|.+.+-.|.-+. -..|++|...+.-. -..+++.+..+-+.-+....+ -
T Consensus 238 Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-f 308 (459)
T KOG4340|consen 238 SA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-F 308 (459)
T ss_pred HH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-C
Confidence 00 01123333445567788888888777775332 23455655444221 123455566666666666543 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 512 DEATITALADGHCKNGKTGEALMIFER 538 (902)
Q Consensus 512 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 538 (902)
...|+..++-.||++.-++.|-.++.+
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 566777777788888877777776654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.7e-06 Score=80.04 Aligned_cols=322 Identities=12% Similarity=0.064 Sum_probs=178.6
Q ss_pred CCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 299 WQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNV 378 (902)
Q Consensus 299 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 378 (902)
+....--+++.+..+.+..++++|++++..-.++... +....+.|..+|....++..|-..++++... .|...-|..
T Consensus 6 ~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrl 82 (459)
T KOG4340|consen 6 AQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRL 82 (459)
T ss_pred ccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHH
Confidence 3333344666777777788888888888777766422 6667777778888888888888888887764 344444432
Q ss_pred -HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048778 379 -LINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEG--LCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCR 455 (902)
Q Consensus 379 -li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 455 (902)
-...+.+.+.+.+|+.+...|.+. |+...-..-+.+ ....+++..+..++++.... .+..+.+.......+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeec
Confidence 235566778888888888877653 333322222222 23456677777777665422 233344444444567
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHH
Q 048778 456 EGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEAT----ITALADGHCKNGKTGE 531 (902)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~ 531 (902)
.|+++.|.+-|+...+-+--.....|+..+.. .+.|+.+.|++...+++++|+...+.. .+-.++.- .+..
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr----svgN 231 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR----SVGN 231 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh----cccc
Confidence 78888888877777665433344566655433 355777777777777777776422211 00000000 0000
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048778 532 ALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKF-GLVPSVVTYTILVDGLFRAGNIALAMSMIEVMK 610 (902)
Q Consensus 532 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (902)
-..+... .-...+|.-...+.+.|+++.|.+.+..|.-. ....|++|...+.-. -..+++.+..+-+.-++
T Consensus 232 t~~lh~S-------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 232 TLVLHQS-------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLL 303 (459)
T ss_pred hHHHHHH-------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHH
Confidence 0000000 00112333334455667777777777666421 122344443332211 12344555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 611 LAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFK 643 (902)
Q Consensus 611 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 643 (902)
..+ +--..||..++-.||+..-++-|..++.+
T Consensus 304 ~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 304 QQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 543 23345777777778887777777766654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.6e-06 Score=91.83 Aligned_cols=269 Identities=12% Similarity=0.017 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLAGC-PPNVH-TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILV 660 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 660 (902)
...|..+...+...|+.+.+.+.+........ .++.. ........+...|++++|...+++..+.. +.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44566666667777777777766666554321 12221 22223445677899999999999988763 444544442 2
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhh
Q 048778 661 RAHAS----TGRLDHAFKIVSFMVANGCQLNS-NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSK 735 (902)
Q Consensus 661 ~~~~~----~g~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (902)
..+.. .|..+.+.+.+... .+..|+. .....+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G--------------------------------- 128 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAG--------------------------------- 128 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcC---------------------------------
Confidence 23333 34555555555441 1233433 34445555677777
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-chHhH---HHHHHHHHccCCh
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF-PAKAI---TSIIGCYCKERKY 811 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~---~~l~~~~~~~g~~ 811 (902)
++++|.+.+++.++..|.+...+..++..|...|++++|+..+++..+.... |+... ..++..+...|++
T Consensus 129 ------~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 129 ------QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred ------CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999999874322 22212 4688899999999
Q ss_pred HHHHHHHHHHHHcCCCCC-H-HH--HHHHHHHHHhcCCHHHHHHH---HHHHHhC-CCCCcchhHHHHHHHHhcCCcHhH
Q 048778 812 DDCLEFMNLILESGFVPS-F-ES--HCTVIQGLQSEGRNKQAKNL---VSDLFRY-NGIEEKAAVLPYIEFLLTGDELGK 883 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~-~-~~--~~~l~~~l~~~g~~~~A~~~---~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 883 (902)
++|..+++++......+. . .. ...+...+...|..+.+... ....... +.........+...++...|+.++
T Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 282 (355)
T cd05804 203 EAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDA 282 (355)
T ss_pred HHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHH
Confidence 999999999864322112 1 11 11334445556644333333 1211111 111112223356677888999999
Q ss_pred HHHHHHHHHhc
Q 048778 884 SIDLLNLIDQV 894 (902)
Q Consensus 884 a~~~l~~~~~~ 894 (902)
|...++.+...
T Consensus 283 a~~~L~~l~~~ 293 (355)
T cd05804 283 LDKLLAALKGR 293 (355)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-07 Score=93.54 Aligned_cols=168 Identities=13% Similarity=0.020 Sum_probs=131.8
Q ss_pred CcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh--H-H
Q 048778 726 DDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTT---DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA--I-T 799 (902)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~-~ 799 (902)
..+.+...+..+...|++++|...++++++..|.++ .++..++..|...|++++|+..++++++..+..... . .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344556666667777799999999999999887765 577899999999999999999999999854322222 2 5
Q ss_pred HHHHHHHcc--------CChHHHHHHHHHHHHcCCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHHHH
Q 048778 800 SIIGCYCKE--------RKYDDCLEFMNLILESGFVPSF-ESH-----------------CTVIQGLQSEGRNKQAKNLV 853 (902)
Q Consensus 800 ~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~-~~~-----------------~~l~~~l~~~g~~~~A~~~~ 853 (902)
.++.++... |++++|.+.++++.+. .|+. ..+ ..++..+.+.|++++|+..+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 667777665 7899999999999875 4542 111 24567788999999999999
Q ss_pred HHHHhCCC-CC-cchhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 854 SDLFRYNG-IE-EKAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 854 ~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
+++++... .| ....+..++.++.+.|++++|.+.++.+..+.
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99976643 23 24578889999999999999999999987764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-05 Score=95.79 Aligned_cols=336 Identities=14% Similarity=0.070 Sum_probs=186.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CC--hhhHHHHHHHHH
Q 048778 488 LCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDL------KT--PHVLNSFLDVLC 559 (902)
Q Consensus 488 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~--~~~~~~li~~~~ 559 (902)
+...|+++.+...+..+.......++.........+...|+.+++..++......-.. +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3345555555555544311100111222233344445667777777777665432100 11 111122234455
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHh
Q 048778 560 KENKLKEEYAMFGKILKFGLVPS----VVTYTILVDGLFRAGNIALAMSMIEVMKLAG--C-PPN--VHTYTVIINGLCQ 630 (902)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~p~--~~~~~~li~~~~~ 630 (902)
..|++++|...+++....-...+ ....+.+...+...|++++|...+++..... . .+. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 67888888888877665211111 1234555566677888888888887776421 0 111 2344555667778
Q ss_pred cCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHH
Q 048778 631 RGRFKEAEMLLFKMFD----LGVS--P-NHITYSILVRAHASTGRLDHAFKIVSFMVANG--CQLN--SNVYSALLAGLV 699 (902)
Q Consensus 631 ~g~~~~A~~~~~~m~~----~g~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~~~--~~~~~~l~~~~~ 699 (902)
.|++++|...+++..+ .+.. + ....+..+...+...|++++|...+.+..... ..+. ...+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 8888888888777653 2211 1 12334455666777788888888888776421 1121 122222333444
Q ss_pred hcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC--CCCHHHH-----HHHHHHHH
Q 048778 700 SSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG--GSTTDFY-----NFLVVELC 772 (902)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~-----~~l~~~~~ 772 (902)
..| +.++|.+.++++.... ......+ ...+..+.
T Consensus 624 ~~G---------------------------------------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 624 ARG---------------------------------------DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HcC---------------------------------------CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 444 8888888887775542 1111111 11223445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchHh---H-HHHHHHHHccCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhc
Q 048778 773 RAGRIVEADRIMKDIMKSGVFPAKA---I-TSIIGCYCKERKYDDCLEFMNLILES----GFVPS-FESHCTVIQGLQSE 843 (902)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~~~~p~~~---~-~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~l~~~ 843 (902)
..|+.+.|...+............. . ..++.++...|++++|..+++++... |..++ ..++..++.++.+.
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 5788888888876654321111111 1 45666788888888888888887642 22222 25566777888888
Q ss_pred CCHHHHHHHHHHHHhCCCC
Q 048778 844 GRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 844 g~~~~A~~~~~~~~~~~~~ 862 (902)
|+.++|...+.++++....
T Consensus 745 G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 745 GRKSEAQRVLLEALKLANR 763 (903)
T ss_pred CCHHHHHHHHHHHHHHhCc
Confidence 8888888888888766543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.2e-06 Score=86.05 Aligned_cols=120 Identities=9% Similarity=0.092 Sum_probs=49.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-
Q 048778 558 LCKENKLKEEYAMFGKILKFGLVP-SVVTYTILVDGLFRAG-NIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRF- 634 (902)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~- 634 (902)
+...+..++|+.+..++++. .| +..+|+.....+...| ++++++..++++.+.. +.+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 33344444555555444442 12 2223333333333333 3444444444444432 22333344333333333331
Q ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 635 -KEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 635 -~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
+++..+++++++.. +-|..+|+....++.+.|+++++++.++++++
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444444444332 23344444444444444444444444444444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.9e-06 Score=85.55 Aligned_cols=220 Identities=9% Similarity=0.032 Sum_probs=128.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccc
Q 048778 631 RGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTG-RLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLS 709 (902)
Q Consensus 631 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 709 (902)
.++.++|+.+..++++.. +-+...|+....++...| ++++++.+++++++. -+.+..+|+.....+.+.+.
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-npknyqaW~~R~~~l~~l~~------ 121 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-NPKNYQIWHHRRWLAEKLGP------ 121 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-CCcchHHhHHHHHHHHHcCc------
Confidence 456667777777777643 233445555555555666 467777777777763 12344455544444444440
Q ss_pred cccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 710 ISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
...+++..+++++++.+|.|..+|...+.++...|++++|++.++++++
T Consensus 122 -------------------------------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 122 -------------------------------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred -------------------------------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 0135667777777777777777777777777777777777777777777
Q ss_pred cCCCchHhHHHHHHHHHcc---CC----hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc----CCHHHHHHHHHHHH
Q 048778 790 SGVFPAKAITSIIGCYCKE---RK----YDDCLEFMNLILESGFVPS-FESHCTVIQGLQSE----GRNKQAKNLVSDLF 857 (902)
Q Consensus 790 ~~~~p~~~~~~l~~~~~~~---g~----~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~----g~~~~A~~~~~~~~ 857 (902)
.++....+.+....++.+. |. .++++.+..++++. .|+ ...|+.+..++... ++..+|.+++.+..
T Consensus 171 ~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 171 EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 5443333334444444433 22 24566777666653 453 36666666666552 34566777777765
Q ss_pred hCCCCCcchhHHHHHHHHhcCC------------------cHhHHHHHHHHHH
Q 048778 858 RYNGIEEKAAVLPYIEFLLTGD------------------ELGKSIDLLNLID 892 (902)
Q Consensus 858 ~~~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~l~~~~ 892 (902)
+..+ .+......|++.+.... ..++|.++++.+.
T Consensus 249 ~~~~-~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 249 SKDS-NHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cccC-CcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 4332 22334444555554421 2366888888774
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.3e-07 Score=97.99 Aligned_cols=219 Identities=14% Similarity=0.143 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 581 PSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILV 660 (902)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 660 (902)
|--..-..+...+...|-...|..+|++.. .|..+|.+|+..|+..+|..+..+-.+. +||...|..++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333334445555556666666666665542 3445556666666666666666555552 46666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 661 RAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 661 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
+......-+++|.++.+..... .-..+.......+
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~-------------------------------------- 499 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNK-------------------------------------- 499 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccch--------------------------------------
Confidence 6555555555555555543221 0000000011111
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHH
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~ 818 (902)
+++++.+.++...+.+|-...+|..++.+..+.++++.|.+.|..... ..|++.. +++..+|.+.|+..+|...+
T Consensus 500 -~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128|consen 500 -DFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred -hHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence 555555555555555555555555555555555555555555555554 4455544 55555555555555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 819 NLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 819 ~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
+++.+.+..+ ...|........+-|.+++|++.+.+++..
T Consensus 577 ~EAlKcn~~~-w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 577 KEALKCNYQH-WQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhcCCCC-CeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 5555443222 112222222244555555555555555433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-06 Score=82.78 Aligned_cols=157 Identities=12% Similarity=0.125 Sum_probs=124.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKN 736 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (902)
..+-..+...|+-+....+....... .+.|......++......|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g---------------------------------- 114 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNG---------------------------------- 114 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhc----------------------------------
Confidence 55666777777777777777665431 3335555555666666666
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDC 814 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A 814 (902)
++.+|...++++....|+|...|+.++.+|.+.|+.++|..-|.++++ +.|++.. ++++..|.-.|+++.|
T Consensus 115 -----~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 115 -----NFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred -----chHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999999999999999998 6666555 8899999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 815 LEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
..++......+ .-|+..-..++.+....|++++|..+..+-
T Consensus 188 ~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 188 ETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99999988653 335666677888888999999999888763
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.6e-07 Score=95.32 Aligned_cols=257 Identities=14% Similarity=0.113 Sum_probs=198.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048778 591 DGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLD 670 (902)
Q Consensus 591 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 670 (902)
.-+.+.|++.+|.-.|+..+..+ +-+...|-.|.......++-..|+..+++..+.. +-|......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34678999999999999999885 6677899999999999999999999999999875 567888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHH
Q 048778 671 HAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLR 750 (902)
Q Consensus 671 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 750 (902)
+|++.++..+.. .|.... ....+..+..-.. +.+.....+....++|
T Consensus 371 ~Al~~L~~Wi~~--~p~y~~-------l~~a~~~~~~~~~------------------------~s~~~~~~l~~i~~~f 417 (579)
T KOG1125|consen 371 QALKMLDKWIRN--KPKYVH-------LVSAGENEDFENT------------------------KSFLDSSHLAHIQELF 417 (579)
T ss_pred HHHHHHHHHHHh--Cccchh-------ccccCccccccCC------------------------cCCCCHHHHHHHHHHH
Confidence 999999999864 222111 0111100000000 0011111455666777
Q ss_pred HHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCC
Q 048778 751 DRIESCGG--STTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGF 826 (902)
Q Consensus 751 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 826 (902)
-++....| .|+.+...|+-.|.-.|.+++|+..|+.++. ++|++.. +.|+..+....+.++|+..|.++++ +
T Consensus 418 Leaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--L 493 (579)
T KOG1125|consen 418 LEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--L 493 (579)
T ss_pred HHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--c
Confidence 77766665 8999999999999999999999999999998 7898877 9999999999999999999999998 4
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---------CcchhHHHHHHHHhcCCcHhHHHH
Q 048778 827 VPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI---------EEKAAVLPYIEFLLTGDELGKSID 886 (902)
Q Consensus 827 ~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~ 886 (902)
.|.. .+...++-.|...|.++||.+.|=.++.+... ++..+|..|-.++...++.|...+
T Consensus 494 qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 494 QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 7874 66677888888999999999999988755322 223578888777777777764443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.4e-07 Score=92.84 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=79.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcC
Q 048778 592 GLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVR----AHASTG 667 (902)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~----~~~~~g 667 (902)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .|.. ...+.. .+...+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~-l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSI-LTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHH-HHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHH-HHHHHHHHHHHHhCch
Confidence 344556666666655431 244455555666666666666666666666532 3322 222222 222223
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHH
Q 048778 668 RLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAF 747 (902)
Q Consensus 668 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 747 (902)
++.+|..+|+++.+. ..++..+.+.+..+....| ++++|.
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~---------------------------------------~~~eAe 221 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLG---------------------------------------HYEEAE 221 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT----------------------------------------HHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhC---------------------------------------CHHHHH
Confidence 566666666665543 4455556666665666665 666666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 048778 748 RLRDRIESCGGSTTDFYNFLVVELCRAGRI-VEADRIMKDIMK 789 (902)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 789 (902)
++++++++.+|.++.++..++.+....|+. +.+.+.+.++..
T Consensus 222 ~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 222 ELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666666666666666666666666655 445555555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00086 Score=74.42 Aligned_cols=193 Identities=15% Similarity=0.090 Sum_probs=119.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHH
Q 048778 172 LAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEA 251 (902)
Q Consensus 172 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 251 (902)
+.|.|+.++|..+++.....+.. |..|...+-..|...+..++|..+|++.... .|+......+..+|.|.+++.+-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999888887776644 8889999999999999999999999998866 57777778888888998888765
Q ss_pred HHHHHHhhhcCCCCCCHhhHHHHHHHHHhcC-Ch---------hHHHHHHHHHHHCC-CCcCHhhHHHHHHHHHhcCChH
Q 048778 252 FKVFDVMSKEASYRPNSVTFTTLIHGLCEVG-RL---------DEAFSLKDEMCEKG-WQPSTRTYTVLIKALCDISLTD 320 (902)
Q Consensus 252 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~---------~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~ 320 (902)
.+.--++-+ .++.+...+=++++.+.+.- .. .-|.++++.+.+.+ -.-+..-...-...+-..|+++
T Consensus 130 Qkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ 207 (932)
T KOG2053|consen 130 QKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQ 207 (932)
T ss_pred HHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHH
Confidence 544444444 33345555445555554432 11 22444444444443 1111111112223334556677
Q ss_pred HHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 048778 321 KALSLF-DEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGH 369 (902)
Q Consensus 321 ~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 369 (902)
+|+.++ ....+.-...+...-+.-++.+...+++.+..++-.++...|.
T Consensus 208 eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 208 EALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 777766 3333333333444555556666666777777776666666543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.8e-05 Score=94.11 Aligned_cols=333 Identities=13% Similarity=0.054 Sum_probs=196.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC------CCCH--HHHHHHHHHHH
Q 048778 453 FCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGI------SPDE--ATITALADGHC 524 (902)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~--~~~~~li~~~~ 524 (902)
....|+++.+...++.+.......+..........+...|++++|...+......-- .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 334566666666655542211111122223334445567788888777776644210 0111 11122234456
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHH
Q 048778 525 KNGKTGEALMIFERMVQNTDLKTP----HVLNSFLDVLCKENKLKEEYAMFGKILKF----GLV-PSVVTYTILVDGLFR 595 (902)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~ 595 (902)
..|++++|...+++........+. ...+.+...+...|++++|...+.+.... |.. ....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 788888888888887663111121 23455666677889999999988887642 111 112345556677888
Q ss_pred cCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHH
Q 048778 596 AGNIALAMSMIEVMKL----AGCP--P-NVHTYTVIINGLCQRGRFKEAEMLLFKMFDL--GVSP--NHITYSILVRAHA 664 (902)
Q Consensus 596 ~g~~~~A~~~~~~m~~----~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~~~~~l~~~~~ 664 (902)
.|++++|...+++... .+.. + ....+..+...+...|++++|...+++.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999999887765 2211 1 2234455666777889999999998887642 1112 2344555677788
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-CCHHHHH-----HHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhh
Q 048778 665 STGRLDHAFKIVSFMVANGCQ-LNSNVYS-----ALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFL 738 (902)
Q Consensus 665 ~~g~~~~A~~~~~~m~~~g~~-~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (902)
..|++++|...+..+....-. .....+. ..+..+...|
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------------------------------ 667 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG------------------------------------ 667 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC------------------------------------
Confidence 899999999998888642111 1111110 0112223344
Q ss_pred hhccHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCchHhH--HHHHHHHHcc
Q 048778 739 REMDVEHAFRLRDRIESCGGSTT----DFYNFLVVELCRAGRIVEADRIMKDIMKS----GVFPAKAI--TSIIGCYCKE 808 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~--~~l~~~~~~~ 808 (902)
+.+.|.+.+.......+... ..+..++.++...|++++|...++++... |...+... ..++.++...
T Consensus 668 ---~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 668 ---DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred ---CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 77777777766554322221 12456777888888888888888887653 22222222 5667778888
Q ss_pred CChHHHHHHHHHHHHc
Q 048778 809 RKYDDCLEFMNLILES 824 (902)
Q Consensus 809 g~~~~A~~~~~~~~~~ 824 (902)
|+.++|...+.++.+.
T Consensus 745 G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 745 GRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888888754
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-06 Score=83.45 Aligned_cols=119 Identities=9% Similarity=0.031 Sum_probs=102.2
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHH-HHccCC--hHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGC-YCKERK--YDDCLE 816 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~-~~~~g~--~~~A~~ 816 (902)
+.+++...+++.++.+|.|...|..|+..|...|++++|+..|+++.+ +.|++.. ..++.+ +...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 788999999999999999999999999999999999999999999998 5566555 777776 467777 599999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 048778 817 FMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE 864 (902)
Q Consensus 817 ~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 864 (902)
+++++++. .| +..++..++..+.+.|++++|+..++++++.....+
T Consensus 132 ~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999986 45 568889999999999999999999999987765433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.8e-07 Score=91.77 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG--RIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~ 818 (902)
+.+.|.+.++.|.+.++++..+-...++.....| ++.+|.-+|+++.+. ..++... +.++.++...|++++|.+++
T Consensus 146 R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L 224 (290)
T PF04733_consen 146 RPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELL 224 (290)
T ss_dssp -HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 6666666666666554444433333333333333 466666666665543 2233333 56666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 048778 819 NLILESGFVPSFESHCTVIQGLQSEGRN-KQAKNLVSDL 856 (902)
Q Consensus 819 ~~~~~~~~~p~~~~~~~l~~~l~~~g~~-~~A~~~~~~~ 856 (902)
+++.+.. .-++.+...++-+....|+. +.+.+++.++
T Consensus 225 ~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 225 EEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 6655432 12344555555555555555 4455555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-06 Score=87.24 Aligned_cols=194 Identities=11% Similarity=-0.022 Sum_probs=129.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H-
Q 048778 615 PPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPN---HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNS-N- 689 (902)
Q Consensus 615 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~- 689 (902)
......+..+...+...|++++|...++++.... +.+ ...+..+..++.+.|++++|...++++++. .|+. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCch
Confidence 3455677778888888899999999888887653 222 246677888888889999999999888864 3432 2
Q ss_pred --HHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHH
Q 048778 690 --VYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFL 767 (902)
Q Consensus 690 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 767 (902)
.+..+...+.... .......|+.++|.+.+++++...|.+...+..+
T Consensus 107 ~~a~~~~g~~~~~~~-------------------------------~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 107 DYAYYLRGLSNYNQI-------------------------------DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred HHHHHHHHHHHHHhc-------------------------------ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 2222332232211 1234445778888888888888887776655444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCC
Q 048778 768 VVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGF-VP-SFESHCTVIQGLQSEGR 845 (902)
Q Consensus 768 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~l~~~g~ 845 (902)
...... ... . ......++..|...|++.+|+..++++.+... .| ....+..++.++.+.|+
T Consensus 156 ~~~~~~----~~~------~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 156 KRMDYL----RNR------L-------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHHH----HHH------H-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence 322110 000 0 00013567788999999999999999986421 23 24788899999999999
Q ss_pred HHHHHHHHHHHHhC
Q 048778 846 NKQAKNLVSDLFRY 859 (902)
Q Consensus 846 ~~~A~~~~~~~~~~ 859 (902)
+++|..+++.+...
T Consensus 219 ~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 219 KDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998886543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-05 Score=92.78 Aligned_cols=242 Identities=11% Similarity=0.024 Sum_probs=181.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 606 IEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPN-----HITYSILVRAHASTGRLDHAFKIVSFMV 680 (902)
Q Consensus 606 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 680 (902)
|++..... +.....|...|.-....++.++|.++.++++.. +.+. ...|.++++.-...|.-+...++|+++.
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 44444431 444567888888888888889999888888753 3222 3467777777777788888889999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC
Q 048778 681 ANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGST 760 (902)
Q Consensus 681 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 760 (902)
+ +.....+|..|...|.+.+ ++++|.++++.|.+.....
T Consensus 1525 q--ycd~~~V~~~L~~iy~k~e---------------------------------------k~~~A~ell~~m~KKF~q~ 1563 (1710)
T KOG1070|consen 1525 Q--YCDAYTVHLKLLGIYEKSE---------------------------------------KNDEADELLRLMLKKFGQT 1563 (1710)
T ss_pred H--hcchHHHHHHHHHHHHHhh---------------------------------------cchhHHHHHHHHHHHhcch
Confidence 6 3444567788888888888 8999999999999988878
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQ 838 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 838 (902)
...|..++..+.++.+-++|.++++++++.-++...+- ...+..-.+.|+.+.+..+|+..+.. +..-.+.|+.+++
T Consensus 1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYID 1642 (1710)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHH
Confidence 88999999999999999999999999988544433443 66677778899999999999998864 2335678888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcch--hHHHHHHHHhcCCcHhHHHHHHHHH
Q 048778 839 GLQSEGRNKQAKNLVSDLFRYNGIEEKA--AVLPYIEFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 839 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~l~~~ 891 (902)
.=.+.|..+.+..+|++++...+.+..+ .|..++.-=...|+-+.+..+-.+.
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 8889999999999999999888887754 3333443334456655555444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-06 Score=92.10 Aligned_cols=219 Identities=12% Similarity=0.070 Sum_probs=143.4
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 546 KTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVII 625 (902)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 625 (902)
|-...-..+...+.+.|-..+|..+|++.. .|.-.+.+|+..|+..+|..+..+-.++ +||...|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333334455666677777777777776653 3555667777777777777777766663 67777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCc
Q 048778 626 NGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKA 704 (902)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~ 704 (902)
+......-++.|.++.+..... .-..+.....+.++++++.+.++...+ +.| -..+|-.+..+..+.+
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqle-- 533 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLE-- 533 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHh--
Confidence 6666666667777666554321 112233333446777888777777665 233 3455555554444444
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIM 784 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 784 (902)
+++.|.+.|.......|.+..+|+++..+|.+.|+-.+|...+
T Consensus 534 -------------------------------------k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128|consen 534 -------------------------------------KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred -------------------------------------hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence 8888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048778 785 KDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 785 ~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
+++.+.+..+-.+..+..-.-.+.|.+++|++.+.++.+
T Consensus 577 ~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 577 KEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 888876644433334444456677888888888887763
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.8e-06 Score=78.26 Aligned_cols=164 Identities=12% Similarity=0.073 Sum_probs=136.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 617 NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLA 696 (902)
Q Consensus 617 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 696 (902)
|... ..+-..+...|+-+....+..+..... +.|.......+....+.|++.+|...+.+.... -++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHH
Confidence 3334 566677888888888888877765432 456666677899999999999999999999873 4668899999999
Q ss_pred HHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 048778 697 GLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGR 776 (902)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 776 (902)
+|.+.| ++++|...|.++++..|.++...+.|+..|.-.|+
T Consensus 143 aldq~G---------------------------------------r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 143 ALDQLG---------------------------------------RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHcc---------------------------------------ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048778 777 IVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 777 ~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
.+.|..++......+.....+...+..+....|++++|.++...-.
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 9999999999987543333333889999999999999999877654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.5e-08 Score=62.81 Aligned_cols=32 Identities=56% Similarity=0.991 Sum_probs=19.0
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048778 263 SYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEM 294 (902)
Q Consensus 263 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 294 (902)
|+.||+.|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666665555
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.6e-06 Score=95.44 Aligned_cols=115 Identities=8% Similarity=0.007 Sum_probs=103.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
..++|..+++.+.+..|.+..+...++..+.+.+++++|+..+++.+. ..|+... ..++.++.+.|++++|..+|+
T Consensus 101 ~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 101 RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 5577776 888999999999999999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 820 LILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 820 ~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
++... .|+ ...+..++.++...|+.++|...|+++++.-
T Consensus 179 ~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 179 RLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 99974 454 5888899999999999999999999987664
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.0012 Score=68.94 Aligned_cols=184 Identities=15% Similarity=0.079 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 599 IALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRG---RFKEAEMLLFKMFDL-GVSPNHITYSILVRAHASTGRLDHAFK 674 (902)
Q Consensus 599 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~ 674 (902)
.+++.++++...+.-..-+..+|..+..---..- ..+.....++++... .+.| ..+|..+++.-.+..-++.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHH
Confidence 4556666666655322334445544443221111 255556666666643 2233 3467788888889999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHH
Q 048778 675 IVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRI 753 (902)
Q Consensus 675 ~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 753 (902)
+|.++.+.+..+ +..++.+++..+|.. +.+-|.++|+--
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~csk----------------------------------------D~~~AfrIFeLG 427 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCSK----------------------------------------DKETAFRIFELG 427 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhcC----------------------------------------ChhHHHHHHHHH
Confidence 999999987777 778888888877654 788999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 754 ESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 754 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
++..++++..-...+..+...++-+.|..+|++++..++.|+... ..++.-=..-|+.+.+.++-+++..
T Consensus 428 Lkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 428 LKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 998899998888889999999999999999999998866666654 7777777888999999998888764
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.7e-08 Score=61.51 Aligned_cols=33 Identities=33% Similarity=0.595 Sum_probs=25.1
Q ss_pred CCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 048778 227 GFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMS 259 (902)
Q Consensus 227 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 259 (902)
|+.||+.+||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777763
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.3e-06 Score=77.74 Aligned_cols=147 Identities=10% Similarity=0.074 Sum_probs=108.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048778 590 VDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRL 669 (902)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 669 (902)
+-.|...|+++.+..-.+.+.. |. ..+...++.++++..++...... +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3457777877776444332221 11 01223566778888888877765 67788888888889999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-HhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhcc--HHH
Q 048778 670 DHAFKIVSFMVANGCQL-NSNVYSALLAGL-VSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMD--VEH 745 (902)
Q Consensus 670 ~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 745 (902)
++|...+++..+. .| +...+..+..++ ...| + .++
T Consensus 90 ~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g---------------------------------------~~~~~~ 128 (198)
T PRK10370 90 DNALLAYRQALQL--RGENAELYAALATVLYYQAG---------------------------------------QHMTPQ 128 (198)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcC---------------------------------------CCCcHH
Confidence 9999999988874 44 566777777654 4555 4 588
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 746 AFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 746 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
|.++++++++.+|.+..++..++..+.+.|++++|+..|+++++.
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999998999999999999999999999999999998874
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-05 Score=90.78 Aligned_cols=211 Identities=10% Similarity=0.040 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HCCCCCCHHHHHHH
Q 048778 583 VVTYTILVDGLFRAGNIALA-MSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMF--DLGVSPNHITYSIL 659 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~p~~~~~~~l 659 (902)
......+-.+...-|..++| .+++.++.+ + ...++.+..+...+-+++ -...+.+...+..|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 92 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------V---LERHAAVHKPAAALPELLDYVRRYPHTELFQVLV 92 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------H---HHHhhhhcchHhhHHHHHHHHHhccccHHHHHHH
Confidence 33344444455566666665 334444321 2 233444444444333333 12356679999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhh
Q 048778 660 VRAHASTGRLDHAFKIVSFMVANGCQLNS-NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFL 738 (902)
Q Consensus 660 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (902)
..+..+.|.+++|..+++...+ +.|+. .....+...+.+.+
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~------------------------------------ 134 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQ------------------------------------ 134 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhc------------------------------------
Confidence 9999999999999999999997 57754 55667777888888
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHH
Q 048778 739 REMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~ 818 (902)
++++|...+++++..+|.+...+..++.++.+.|++++|.++|+++...+..+......++.++...|+.++|...|
T Consensus 135 ---~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 135 ---GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred ---cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999844322233388999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 819 NLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 819 ~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
+++.+.. .|....|+.+ .++...-..++++.
T Consensus 212 ~~a~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~ 242 (694)
T PRK15179 212 QAGLDAI-GDGARKLTRR------LVDLNADLAALRRL 242 (694)
T ss_pred HHHHHhh-CcchHHHHHH------HHHHHHHHHHHHHc
Confidence 9999752 4555554433 24556666677774
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.5e-05 Score=79.53 Aligned_cols=113 Identities=13% Similarity=0.114 Sum_probs=87.3
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHH
Q 048778 740 EMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEF 817 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~ 817 (902)
.|+.++|+..++.+++..|.|+..+...+..+.+.++.++|.+.+++++. ..|+... .+++.+|.+.|+..+|+.+
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHHHH
Confidence 34888888888888887788888888888888888888888888888887 5566444 7888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 818 MNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 818 ~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
++...... ..|+..|..|+.+|...|+..+|.....+
T Consensus 397 L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 397 LNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 88877542 34567888888888888887777655544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0018 Score=66.34 Aligned_cols=130 Identities=14% Similarity=0.123 Sum_probs=92.9
Q ss_pred hhhhhhhhhcc-HHHHHHHHHHHHhcCCCCHHHHHHHHH----HHHhc---CCHHHHHHHHHHHHHcCCCchHhH-----
Q 048778 732 RSSKNFLREMD-VEHAFRLRDRIESCGGSTTDFYNFLVV----ELCRA---GRIVEADRIMKDIMKSGVFPAKAI----- 798 (902)
Q Consensus 732 ~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~----- 798 (902)
..++.+|+.|. -+.|.++++.+++-.+.|..+-+..-. .|.+. ..+.+-+.+-+-+.+.|+.|-.+.
T Consensus 384 ~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eia 463 (549)
T PF07079_consen 384 FGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIA 463 (549)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHH
Confidence 45678999888 788899999998877888766554432 22221 233444444445556677665544
Q ss_pred HHHHHH--HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhH
Q 048778 799 TSIIGC--YCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAV 868 (902)
Q Consensus 799 ~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 868 (902)
+-|.++ +...|++.++.-+-.-+.+ +.|++.+|..++-++....+++||.+++.. .+|+..++
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ 528 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMR 528 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhH
Confidence 444443 4578999999888777766 689999999999999999999999999988 35565555
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.3e-05 Score=69.83 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=90.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAS 665 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 665 (902)
|..++-+....|+.+.|...++.+... ++.+...-..-..-+-..|++++|+++++.+++.+ +.|..++-.-+-..-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 344444455556666666666666554 22222222222222344566666666666666554 4455555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHH
Q 048778 666 TGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEH 745 (902)
Q Consensus 666 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (902)
.|+.-+|++-+....+. +..|...|.-+...|...| +++.
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~---------------------------------------~f~k 172 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEG---------------------------------------DFEK 172 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHh---------------------------------------HHHH
Confidence 56666666666555553 4556666666666666666 6666
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 048778 746 AFRLRDRIESCGGSTTDFYNFLVVELCRAG---RIVEADRIMKDIMK 789 (902)
Q Consensus 746 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 789 (902)
|.-.+++++-..|-++..+..++..+.-.| +..-|.+.|.+.++
T Consensus 173 A~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 173 AAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666544443 45556666666665
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.9e-05 Score=85.79 Aligned_cols=204 Identities=9% Similarity=0.029 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 549 HVLNSFLDVLCKENKLKEEYAMFGKILKFGLVP-----SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTV 623 (902)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 623 (902)
..|-..+......++.++|+++.++++.. +.+ -...|.++++.-...|.-+...++|+++.+. .--...|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 33444444455555555555555555431 111 1233444444444444445555555555442 111234444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 624 IINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNK 703 (902)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~ 703 (902)
|...|.+.+.+++|.++++.|.+. +......|...+..+.+..+-+.|..++.++++. -|...
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~e-------------- 1598 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQE-------------- 1598 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhh--------------
Confidence 555555555555555555555432 1234444555555555555555555555555442 22110
Q ss_pred cCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048778 704 ASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRI 783 (902)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 783 (902)
..+.....+...++.|+.++++.+|+..+...|.-...|+.+++.-.++|+.+.+..+
T Consensus 1599 ----------------------Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1599 ----------------------HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred ----------------------hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHH
Confidence 0011111112222333555555555555555555555555555555555555555555
Q ss_pred HHHHHHcCCCc
Q 048778 784 MKDIMKSGVFP 794 (902)
Q Consensus 784 ~~~~~~~~~~p 794 (902)
|+++...++.|
T Consensus 1657 feRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1657 FERVIELKLSI 1667 (1710)
T ss_pred HHHHHhcCCCh
Confidence 55555544444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.2e-06 Score=75.66 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcC
Q 048778 748 RLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESG 825 (902)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 825 (902)
.++++.++.+|.+ +..++..+...|++++|...|+.++. ..|+... ..++.++...|++++|...++++.+.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l- 87 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML- 87 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 3444555443332 33455555555555555555555555 3333333 55555555555566666655555543
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 826 FVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 826 ~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
.| +...+..++.++...|++++|+..++++++.
T Consensus 88 -~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 -DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33 3355555555555556666666666655444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8e-05 Score=69.93 Aligned_cols=186 Identities=10% Similarity=0.080 Sum_probs=144.9
Q ss_pred cCCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048778 596 AGNIALAMSMIEVMKL---AG-CPPNVH-TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLD 670 (902)
Q Consensus 596 ~g~~~~A~~~~~~m~~---~~-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 670 (902)
..+.++.++++.++.. .| ..++.. .|..++-+....|+.+.|...++.+... ++-+...-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 4567788888877765 33 455654 4566777788899999999999999865 2333333223333455679999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHH
Q 048778 671 HAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLR 750 (902)
Q Consensus 671 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 750 (902)
+|+++++..++.. +.|..++.--+......| +.-+|++.+
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G---------------------------------------K~l~aIk~l 143 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQG---------------------------------------KNLEAIKEL 143 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcC---------------------------------------CcHHHHHHH
Confidence 9999999999863 446777776666777777 777999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccC---ChHHHHHHHHHHHHc
Q 048778 751 DRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKER---KYDDCLEFMNLILES 824 (902)
Q Consensus 751 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g---~~~~A~~~~~~~~~~ 824 (902)
.+.++..+.|..+|.-|+..|...|++++|.-.+++++- +.|-... ..+++.+...| +++-|.+++.+.++.
T Consensus 144 n~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 144 NEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987 6676555 88888877665 677889999999884
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.4e-05 Score=89.45 Aligned_cols=219 Identities=10% Similarity=0.054 Sum_probs=143.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVH-TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILV 660 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 660 (902)
+...+..|+..+...+++++|.++.+...+. .|+.. .|..+...+.+.++.+++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4566777888887888888888888866664 44443 333333345555554444433 233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 661 RAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 661 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
+......++.-...+...|.+ +.-+...+..+..+|.+.|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g-------------------------------------- 130 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLN-------------------------------------- 130 (906)
T ss_pred hhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcC--------------------------------------
Confidence 333334444333333344443 2334446667777777777
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHH
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNL 820 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~ 820 (902)
+.++|...++++++.+|.|+.+.+.++..|... ++++|++++.+++.. |...+++.++.++|++
T Consensus 131 -~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k 194 (906)
T PRK14720 131 -ENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSK 194 (906)
T ss_pred -ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHH
Confidence 999999999999999999999999999999999 999999999999763 3444455555555555
Q ss_pred HHHc-------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHh
Q 048778 821 ILES-------------------GFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLL 876 (902)
Q Consensus 821 ~~~~-------------------~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (902)
+... |..--...+.-+-..|-+.+++++++.+++.+++.... +......+...|.
T Consensus 195 ~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 195 LVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 5543 11112233334445666777899999999999888765 3334455666554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.7e-06 Score=75.85 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcC
Q 048778 748 RLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESG 825 (902)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 825 (902)
+.++++++.+|.+......++..+...|++++|.+.++++...+ |+... ..++.+|...|++++|..++++..+.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46778888888888889999999999999999999999998844 54433 889999999999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 826 FVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 826 ~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
..+...+..++.++...|++++|...++++++...
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 33568888899999999999999999999887764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0038 Score=65.40 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048778 372 GVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVD 451 (902)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 451 (902)
|+.+|+.||+-+..+ .++++.+.++++... .+-....|..-|..-....+++....+|.+.+..- -+...|...++
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 666677766655444 666666666666543 22234455666666666666666666666655432 23444444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.9e-06 Score=74.24 Aligned_cols=91 Identities=16% Similarity=0.007 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhh
Q 048778 658 ILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKN 736 (902)
Q Consensus 658 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (902)
.+...+...|++++|...++..+.. .| +...|..+...+...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g---------------------------------- 72 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLK---------------------------------- 72 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHh----------------------------------
Confidence 3445555555555555555555542 23 4445555555555555
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|...|+++++.+|.++..+..++.++...|++++|+..|+++++
T Consensus 73 -----~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 73 -----EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred -----hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555566666555555555555555555555555666666666555555
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-05 Score=72.18 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh--H-HHHHHHHHccCChHHHH
Q 048778 742 DVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA--I-TSIIGCYCKERKYDDCL 815 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~-~~l~~~~~~~g~~~~A~ 815 (902)
+...+...++.+.+.+|.+ ..+...++..+...|++++|...|+.+.+....|... . ..++.++...|++++|+
T Consensus 26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al 105 (145)
T PF09976_consen 26 DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEAL 105 (145)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5666666666666655555 3344445566666666666666666666644222211 1 45566666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 816 EFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 816 ~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
..++..... ......+...+++|.+.|++++|+..|+++
T Consensus 106 ~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 106 ATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666553222 122344555666666666666666666654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0002 Score=67.86 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
.+.+|.-+|+++.++.+|++.+.+..+.+....|++++|..+++.++.+.
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 45555555555555555555555555555555566666666665555543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00015 Score=74.98 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=82.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcC
Q 048778 627 GLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN-SNVYSALLAGLVSSNKAS 705 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~ 705 (902)
.+...|.+++|+..++.++.. .+.|...+....+.+.+.++.++|.+.++++.. ..|+ ...+-.+..+|.+.|
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g--- 388 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGG--- 388 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcC---
Confidence 344556666666666666554 244455555556666666666666666666665 3444 344445555666666
Q ss_pred CccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 706 GVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMK 785 (902)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 785 (902)
+..+|+..++.....+|.|+..|..|+.+|...|+..+|.....
T Consensus 389 ------------------------------------~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 389 ------------------------------------KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred ------------------------------------ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 66666666666666666666666666666666666655554433
Q ss_pred HHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048778 786 DIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 786 ~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
+ .|.-.|++++|+..+..+.+.
T Consensus 433 E-----------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 433 E-----------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred H-----------------HHHhCCCHHHHHHHHHHHHHh
Confidence 2 344456666666666666543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00021 Score=82.06 Aligned_cols=150 Identities=9% Similarity=-0.015 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 585 TYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHA 664 (902)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 664 (902)
.+..+..+|-+.|+.++|..+|+++++.. +-|....|.+...|... +.++|..++.+.... |.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 44455555555555555555555555544 44455555555555555 555555555554432 33
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccH
Q 048778 665 STGRLDHAFKIVSFMVANGCQLN-SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDV 743 (902)
Q Consensus 665 ~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (902)
..+++.++.+++.++... .|+ ...+--+.......- .+....+++..+-+.+-...++
T Consensus 181 ~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~-------------------~~~~~~~~~~~l~~~y~~~~~~ 239 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHR-------------------EFTRLVGLLEDLYEPYKALEDW 239 (906)
T ss_pred hhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhh-------------------ccchhHHHHHHHHHHHhhhhhh
Confidence 334455555555555442 221 111111111111110 0111222333333333444499
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048778 744 EHAFRLRDRIESCGGSTTDFYNFLVVELC 772 (902)
Q Consensus 744 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 772 (902)
+++..+++.+++.+|.|..+..-++.+|.
T Consensus 240 ~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 240 DEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 99999999999999999999999998886
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00044 Score=69.74 Aligned_cols=195 Identities=11% Similarity=0.071 Sum_probs=134.6
Q ss_pred CCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 616 PNVHTYTVII-NGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSAL 694 (902)
Q Consensus 616 p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 694 (902)
|...+|..+- .++.-.|++++|...--..++.. ..+......-..++.-.++.+.|...+++.++ ..|+.......
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhH
Confidence 4445555543 45566788888888877776654 33444444444455667888999999998886 56766554444
Q ss_pred HHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC----HHHHHHHHHH
Q 048778 695 LAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGST----TDFYNFLVVE 770 (902)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~ 770 (902)
-..+.+.. .+...+...++.|++..|.+.|.+.+..+|.+ ...|...+..
T Consensus 243 ~~~~k~le--------------------------~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 243 SMMPKKLE--------------------------VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred hhhHHHHH--------------------------HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 33332222 23345567788899999999999999998665 4456777778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 048778 771 LCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF-ESHCTVIQGLQ 841 (902)
Q Consensus 771 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~l~ 841 (902)
..+.|+..+|+.-.+.+++ +.|.-+- ..-+.++...++|++|.+.+++..+..-.+.. .++.....++-
T Consensus 297 ~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred hcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 8899999999999999987 5565554 56677888999999999999999865333332 44444434443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0012 Score=62.80 Aligned_cols=249 Identities=13% Similarity=0.092 Sum_probs=146.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 048778 486 DGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLK 565 (902)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 565 (902)
+-+.-.|++..++..-...... +-+...-.-+..+|...|...... .++... -.+.......+...+...++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~-~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEG-KATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---cccccc-cCChHHHHHHHHHHhhCcchhH
Confidence 3445567777766655544433 134444445556666666654332 222222 2344444444444444444444
Q ss_pred HHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 566 EEY-AMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKM 644 (902)
Q Consensus 566 ~A~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 644 (902)
+-. ++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+++-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 333444443333333333333455778888888888776521 2333333344566777788888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCC
Q 048778 645 FDLGVSPNHITYSILVRAHA----STGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGS 720 (902)
Q Consensus 645 ~~~g~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (902)
.+. .+..|.+-|..++. ..+++.+|.-+|++|.++ ..|+..+.+....++...+
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~------------------ 221 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG------------------ 221 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc------------------
Confidence 763 24555555555543 345678888888888764 6777778777777777777
Q ss_pred CCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 048778 721 SRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEAD-RIMKDIMK 789 (902)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 789 (902)
++++|..++++++..++.++.++..++-.-...|...++. +...+...
T Consensus 222 ---------------------~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 222 ---------------------RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred ---------------------CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 8888888888888888888888877777766666554443 34444444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-05 Score=76.94 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=87.2
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCCh
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKY 811 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~ 811 (902)
+..+.+.+++++|+..|.+++++.|.|++.|..-+.+|.+.|.++.|++-.+.++. +.|...- ..|+.+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 35566777999999999999999999999999999999999999999999999998 5565544 8999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHH
Q 048778 812 DDCLEFMNLILESGFVPSFESHC 834 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~~~~~~ 834 (902)
++|++.|++.++ ++|+.++|.
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHH
Confidence 999999999988 589887764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.9e-05 Score=67.74 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=100.3
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~ 818 (902)
+.++|...|..+.. .+ ..++...+.+.++.+.+......... ..++..+...|++++|...|
T Consensus 7 ~~~~a~~~y~~~~~--------------~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l 71 (145)
T PF09976_consen 7 QAEQASALYEQALQ--------------AL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAAL 71 (145)
T ss_pred HHHHHHHHHHHHHH--------------HH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45566666666553 23 58889999999999988653332222 66788899999999999999
Q ss_pred HHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHH
Q 048778 819 NLILESGFVPSF--ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 819 ~~~~~~~~~p~~--~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 891 (902)
+.+.+....|.. .....++.++...|++++|+..++.....+ .....+...++.+.+.|++++|+..|+..
T Consensus 72 ~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 72 EKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 999986533332 455668899999999999999998743222 34456778899999999999999999864
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.4e-05 Score=67.25 Aligned_cols=80 Identities=13% Similarity=0.069 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|.+.++.+.+.+|.++..|..++..+...|++++|...++++.+. .|+... ..++.+|...|++++|...++
T Consensus 32 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 32 RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444444444444444444555554445555555554444442 222222 444444444555555555554
Q ss_pred HHHH
Q 048778 820 LILE 823 (902)
Q Consensus 820 ~~~~ 823 (902)
..++
T Consensus 110 ~al~ 113 (135)
T TIGR02552 110 LAIE 113 (135)
T ss_pred HHHH
Confidence 4444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00012 Score=64.74 Aligned_cols=99 Identities=6% Similarity=0.001 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCT 835 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 835 (902)
+.+......++..+...|++++|..+|+.+.. +.|.... ..|+-++-..|++++|+..+..+.... ..++..+..
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ 108 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHH
Confidence 44556677777788888888888888888877 5566555 778888888888888888888887643 235677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 836 VIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 836 l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
++.++...|+.+.|.+-|+.++..
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888888877544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.2e-05 Score=66.59 Aligned_cols=89 Identities=10% Similarity=0.010 Sum_probs=79.5
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCC
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERK 810 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~ 810 (902)
.+..+...|++++|.++|+-+...+|.+...|..|+.++-..|++++|+..|..+.. +.|++.. ..++.++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcCC
Confidence 333444455999999999999999999999999999999999999999999999998 5566665 999999999999
Q ss_pred hHHHHHHHHHHHH
Q 048778 811 YDDCLEFMNLILE 823 (902)
Q Consensus 811 ~~~A~~~~~~~~~ 823 (902)
.+.|.+.|+.++.
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999985
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0001 Score=73.74 Aligned_cols=130 Identities=12% Similarity=0.082 Sum_probs=94.8
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCchHh-H
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESC----G--GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS----GVFPAKA-I 798 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~-~ 798 (902)
|..++.+++..|+++.|+...+.-+.. + .....++..|++++.-.|+++.|.+.|+..+.. |-+.-+. .
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 445567777888999998776554333 2 223457889999999999999999999887532 2222222 2
Q ss_pred -HHHHHHHHccCChHHHHHHHHHHHHc--CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 799 -TSIIGCYCKERKYDDCLEFMNLILES--GF---VPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 799 -~~l~~~~~~~g~~~~A~~~~~~~~~~--~~---~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
.+|++.|.-...+++|+.++.+-+.. .+ .-...++..++.++-..|..++|+.+.+..++.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88999999999999999999875531 11 123467778899999999999999999887644
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00025 Score=71.35 Aligned_cols=261 Identities=12% Similarity=0.003 Sum_probs=151.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 592 GLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDH 671 (902)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 671 (902)
.+.+..++..|+..+...++.. +-+..-|..-...+..-|++++|..-.+.-.+.. +-....+.....++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHH
Confidence 3555666666666666666652 3344445555555556666666665554444321 1112233444444555555555
Q ss_pred HHHHHHH---------------HHHCCC-CCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhh
Q 048778 672 AFKIVSF---------------MVANGC-QLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSK 735 (902)
Q Consensus 672 A~~~~~~---------------m~~~g~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (902)
|.+.++. ...... +|.-..|..+- .+
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lk--------------------------------------a~ 177 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLK--------------------------------------AE 177 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhh--------------------------------------hh
Confidence 5544441 111100 11112222221 12
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH----HHH----------
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI----TSI---------- 801 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~l---------- 801 (902)
.+...|+.++|...--..+++++.+......-+.++.-.++.+.|+..|++.+. +.|+... ...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhh
Confidence 233445888888888888888877777777777777777888888888888887 4465543 111
Q ss_pred HHHHHccCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcC
Q 048778 802 IGCYCKERKYDDCLEFMNLILES---GFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTG 878 (902)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 878 (902)
++-..+.|++.+|.+.+...+.. +..|+...|...+.+..+.|+.++|+.--+++++.+.+- ...+.....++...
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy-ikall~ra~c~l~l 334 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY-IKALLRRANCHLAL 334 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH-HHHHHHHHHHHHHH
Confidence 22356778888888888888752 122234556666667778888888888888775554221 22333444556677
Q ss_pred CcHhHHHHHHHHHHhcC
Q 048778 879 DELGKSIDLLNLIDQVH 895 (902)
Q Consensus 879 g~~~~a~~~l~~~~~~~ 895 (902)
++|++|.+-++...+..
T Consensus 335 e~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88888888887776653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00062 Score=60.73 Aligned_cols=133 Identities=15% Similarity=0.145 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCC---CHHHH
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVP---SFESH 833 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~ 833 (902)
.|.......|+.++.+.|++.||...|++....-...|... ..++++....++...|...++++-+.+ | +++..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 34566677899999999999999999999986333344455 888999999999999999999998753 4 24566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 834 CTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 834 ~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
..+++.|...|++.+|...++.+++.-+.|....+ +...+.++|+.+++..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHHHHHHHH
Confidence 77889999999999999999999877666655544 678899999988887666665544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.97 E-value=1e-05 Score=52.62 Aligned_cols=33 Identities=52% Similarity=0.958 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC
Q 048778 270 TFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPS 302 (902)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 302 (902)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.1e-05 Score=71.80 Aligned_cols=127 Identities=13% Similarity=0.055 Sum_probs=92.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhh
Q 048778 661 RAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLR 739 (902)
Q Consensus 661 ~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (902)
+-+.+.+++.+|+..|.++++ +.| |.+.|..-..+|.+.|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg------------------------------------- 129 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLG------------------------------------- 129 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhc-------------------------------------
Confidence 345677899999999999987 565 5666666777788877
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH---HH
Q 048778 740 EMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD---DC 814 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~---~A 814 (902)
.++.|++-.+.++..+|....+|..|+.+|...|++++|++.|+++++ +.|+..+ ..|-.+=-+.+... .+
T Consensus 130 --~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~ 205 (304)
T KOG0553|consen 130 --EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQA 205 (304)
T ss_pred --chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCccccc
Confidence 889999999999999888899999999999999999999999999988 7787765 55544443333333 33
Q ss_pred HHHHHHHHHcCCCCCH
Q 048778 815 LEFMNLILESGFVPSF 830 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~~ 830 (902)
..-++-....|.-|+.
T Consensus 206 ~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 206 SGSFDMAGLIGAFPDS 221 (304)
T ss_pred ccchhhhhhccCCccc
Confidence 3333333344433554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00018 Score=75.58 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=66.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048778 623 VIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSN 702 (902)
Q Consensus 623 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 702 (902)
.|+..+...++++.|+.+++++.+.. |+. ...++..+...++-.+|++++++.++. .+.+...+......|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 34444445556666666666666542 332 233555555555556666666665542 2224444444444444444
Q ss_pred CcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 703 KASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADR 782 (902)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 782 (902)
+.+.|.++.+++.+..|.+..+|..|+.+|.+.|+++.|+.
T Consensus 249 ---------------------------------------~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 249 ---------------------------------------KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred ---------------------------------------CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 55666666666666666666666666666666666666665
Q ss_pred HHHHH
Q 048778 783 IMKDI 787 (902)
Q Consensus 783 ~~~~~ 787 (902)
.+..+
T Consensus 290 aLNs~ 294 (395)
T PF09295_consen 290 ALNSC 294 (395)
T ss_pred HHhcC
Confidence 55544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0006 Score=71.72 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=91.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhh
Q 048778 656 YSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSK 735 (902)
Q Consensus 656 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (902)
...|+..+...+++++|+.+++++.+. .|+. ...++..+...+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~--------------------------------- 214 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMN--------------------------------- 214 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcC---------------------------------
Confidence 344556666678888888888888764 3543 334566666666
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHH
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDD 813 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~ 813 (902)
+-.+|.+++++.++..|.+...+...+..+...++++.|+.+.+++.+ ..|+... ..|+.+|.+.|++++
T Consensus 215 ------~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ 286 (395)
T PF09295_consen 215 ------EEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFEN 286 (395)
T ss_pred ------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHH
Confidence 677888888888877788888888888888888888888888888887 6677765 788888888888888
Q ss_pred HHHHHHHHH
Q 048778 814 CLEFMNLIL 822 (902)
Q Consensus 814 A~~~~~~~~ 822 (902)
|+..++.+.
T Consensus 287 ALlaLNs~P 295 (395)
T PF09295_consen 287 ALLALNSCP 295 (395)
T ss_pred HHHHHhcCc
Confidence 888877664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.1e-05 Score=51.01 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 048778 164 CYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLS 196 (902)
Q Consensus 164 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~ 196 (902)
+||++|.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.5e-05 Score=62.32 Aligned_cols=76 Identities=17% Similarity=0.340 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh-H-HHHHHHHHccCChHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGS--TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA-I-TSIIGCYCKERKYDDCLEF 817 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~-~~l~~~~~~~g~~~~A~~~ 817 (902)
++++|+.+++++++..|. +...+..++.+|.+.|++++|++++++ .+ ..|... . ..++.+|.+.|++++|++.
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 555555555555555542 333444455555555555555555555 22 112221 1 3445555555555555555
Q ss_pred HHH
Q 048778 818 MNL 820 (902)
Q Consensus 818 ~~~ 820 (902)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00023 Score=75.30 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=86.3
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCC
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERK 810 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~ 810 (902)
.+......|++++|++.|+++++.+|.+...|..++.+|...|++++|+..++++++ +.|+... ..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCC
Confidence 345566677999999999999999999999999999999999999999999999998 5565554 888999999999
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 048778 811 YDDCLEFMNLILESGFVPS-FESHCTVIQG 839 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 839 (902)
+++|+..++++++. .|+ .....++..+
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999999975 564 3444444433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.1e-05 Score=61.33 Aligned_cols=78 Identities=21% Similarity=0.383 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHcCCC-chHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 048778 775 GRIVEADRIMKDIMKSGVF-PAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKN 851 (902)
Q Consensus 775 g~~~~A~~~~~~~~~~~~~-p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~ 851 (902)
|+++.|+.+++++.+.... ++... ..++.+|.+.|++++|..++++ .+. .|. ......++.++.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4444555555555443221 11222 3344444455555555544444 211 121 1222233444444455555544
Q ss_pred HHHH
Q 048778 852 LVSD 855 (902)
Q Consensus 852 ~~~~ 855 (902)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 4443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00067 Score=63.78 Aligned_cols=86 Identities=17% Similarity=0.123 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH--hH-HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHH
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK--AI-TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESH 833 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~ 833 (902)
+.....+..++..+...|++++|+..|+++++....+.. .. ..++.+|.+.|++++|...++++.+. .| +...+
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 109 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSAL 109 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHH
Confidence 456677899999999999999999999999875544332 23 88999999999999999999999874 45 35677
Q ss_pred HHHHHHHHhcCC
Q 048778 834 CTVIQGLQSEGR 845 (902)
Q Consensus 834 ~~l~~~l~~~g~ 845 (902)
..++.++...|+
T Consensus 110 ~~lg~~~~~~g~ 121 (172)
T PRK02603 110 NNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHcCC
Confidence 778888887776
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.1e-05 Score=49.81 Aligned_cols=33 Identities=36% Similarity=0.575 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 048778 269 VTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQP 301 (902)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 301 (902)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666555554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.001 Score=73.60 Aligned_cols=121 Identities=13% Similarity=0.038 Sum_probs=92.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCchH-hH-HHHHHHHHccCCh
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG--------RIVEADRIMKDIMKSGVFPAK-AI-TSIIGCYCKERKY 811 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~-~~-~~l~~~~~~~g~~ 811 (902)
+.+.|..+|+++++.+|.+..+|..++.+|.... ++..+.+..++.......|.. .. ..++-.+...|++
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 6889999999999999999999998887765542 234455555554442222222 22 5556666678999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 048778 812 DDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE 864 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 864 (902)
++|...++++++. .|+...|..++.++...|+.++|++.+++++...+...
T Consensus 437 ~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 437 DEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 9999999999986 57888999999999999999999999999977765443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00066 Score=66.51 Aligned_cols=119 Identities=8% Similarity=0.064 Sum_probs=99.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHc---cCChHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCK---ERKYDDCLE 816 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~---~g~~~~A~~ 816 (902)
..+....-++.-+..+|.|...|..|+..|...|++..|..-|.++.+ +.|++.. ..++.++.. .....++..
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 577888888888999999999999999999999999999999999998 6666655 566665543 236789999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 048778 817 FMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE 864 (902)
Q Consensus 817 ~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 864 (902)
++++++.. +| ++.+...++..++.+|++.+|...++.|++.....+
T Consensus 215 ll~~al~~--D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 215 LLRQALAL--DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999985 56 568888999999999999999999999988764433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00043 Score=60.58 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH----hH-HHHHHHHHccCChHHHHHHHHHHHHcCCC-C-CHHHHHHH
Q 048778 764 YNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK----AI-TSIIGCYCKERKYDDCLEFMNLILESGFV-P-SFESHCTV 836 (902)
Q Consensus 764 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l 836 (902)
+..++..+.+.|++++|.+.|+++.+.. |+. .. ..++.++...|++++|..+++.+...... | ....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4445555555555555555555555422 221 11 44555555555555555555555532101 0 12344455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 837 IQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 837 ~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
+.++.+.|+.++|...++++++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 555555555555555555554443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.063 Score=54.29 Aligned_cols=71 Identities=7% Similarity=0.035 Sum_probs=35.7
Q ss_pred CCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCc
Q 048778 792 VFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSE-GRNKQAKNLVSDLFRYNGIEE 864 (902)
Q Consensus 792 ~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~-g~~~~A~~~~~~~~~~~~~~~ 864 (902)
++|++.. ..+..+-...|++..|..-.+.+.. ..|....|..++++-... |+-.++...+-+.++.+..|.
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 3444444 4444445555555555555554443 245555555555554443 555555555555555554443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.073 Score=55.03 Aligned_cols=358 Identities=13% Similarity=0.174 Sum_probs=177.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH---CCCCCCHHHHHHH
Q 048778 307 TVLIKALCDISLTDKALSLFDEMVVK----RCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQ---DGHFPGVVTYNVL 379 (902)
Q Consensus 307 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~l 379 (902)
+..++++...|++.+++.+++++..+ .+.-+..+|+.++-.+.+ ..|-++.+ ..+-|| |.-+
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYem 200 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR--------SYFLELKESMSSDLYPD---YYEM 200 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH--------HHHHHHHHhcccccChH---HHHH
Confidence 34455566667777777666666543 334567777776666654 23333322 112222 3334
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhc
Q 048778 380 INGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRM--NKSYKAVHLLKRVVDGGLFPDEI-TYNILVDGFCRE 456 (902)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~--g~~~~A~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~ 456 (902)
|-.|.+.=+.-+ .-.-..+.|.......++....-. .+..--++++......-+.|+-. ....+...+.+
T Consensus 201 ilfY~kki~~~d------~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~- 273 (549)
T PF07079_consen 201 ILFYLKKIHAFD------QRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS- 273 (549)
T ss_pred HHHHHHHHHHHh------hchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc-
Confidence 444433211111 100011223333333333333221 11222233333333333334322 22233333333
Q ss_pred CCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHh
Q 048778 457 GQLDIALKIFNSMSIFGL----VPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATI-------TALADGHCK 525 (902)
Q Consensus 457 g~~~~A~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~li~~~~~ 525 (902)
+.+++..+-+.+....+ ..-..++..++....+.++...|.+.+.-+... .|+...- ..+.+..|.
T Consensus 274 -~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~ 350 (549)
T PF07079_consen 274 -DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCE 350 (549)
T ss_pred -ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhc
Confidence 44555544444433211 112346777777777888888887777766554 2222111 111122221
Q ss_pred ----cCCHHHHHHHHHHHHhCCCCCChhhHHHHH---HHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHH----HHH
Q 048778 526 ----NGKTGEALMIFERMVQNTDLKTPHVLNSFL---DVLCKENK-LKEEYAMFGKILKFGLVPSVVTYTILV----DGL 593 (902)
Q Consensus 526 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~li----~~~ 593 (902)
.-+...=+.+++......+. .......++ .-+-+.|. -++|..+++.+++.. .-|...-|.+. ..|
T Consensus 351 DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y 428 (549)
T PF07079_consen 351 DDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAY 428 (549)
T ss_pred chHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHH
Confidence 11222334445554443221 111112222 23445555 788899999888631 22443333322 222
Q ss_pred HH---cCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 594 FR---AGNIALAMSMIEVMKLAGCPPNVH----TYTVIING--LCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHA 664 (902)
Q Consensus 594 ~~---~g~~~~A~~~~~~m~~~~~~p~~~----~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 664 (902)
.. ...+..-+.+-+-..+.|++|-.+ .-|.|.++ +..+|++.++.-.-.-+.+ +.|++.+|..++-++.
T Consensus 429 ~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~ 506 (549)
T PF07079_consen 429 KQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLM 506 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHH
Confidence 22 123444444445555677777443 34444443 4568999998876666655 6799999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 665 STGRLDHAFKIVSFMVANGCQLNSNVYSAL 694 (902)
Q Consensus 665 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 694 (902)
...++++|..++..+ +|+..++++-
T Consensus 507 e~k~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 507 ENKRYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred HHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence 999999999999875 7777766643
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.75 E-value=8.9e-05 Score=56.43 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=49.0
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
+..+...|++++|.+.|+++++.+|.+..++..++.++...|++++|+..|+++++ ..|++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 34455666999999999999998888999999999999999999999999999887 44553
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.72 E-value=5.2e-05 Score=48.76 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 048778 163 PCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVL 195 (902)
Q Consensus 163 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~ 195 (902)
.+|+.+|.++++.|+++.|+.+|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00069 Score=59.28 Aligned_cols=97 Identities=8% Similarity=0.034 Sum_probs=70.1
Q ss_pred chhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--HhH-HHH
Q 048778 728 DDYERSSKNFLREMDVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA--KAI-TSI 801 (902)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~-~~l 801 (902)
+.+...+..+.+.|++++|.+.++.+++..|.+ ..++..++..+.+.|++++|...++.+....+... ... ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 445666777777888888888888888776554 45677788888888888888888888876432211 122 677
Q ss_pred HHHHHccCChHHHHHHHHHHHHc
Q 048778 802 IGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
+.++.+.|++++|...++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 77788888888888888888765
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00041 Score=57.63 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-hH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048778 765 NFLVVELCRAGRIVEADRIMKDIMKSGVFPAK-AI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQS 842 (902)
Q Consensus 765 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~ 842 (902)
..++..+...|++++|+..++++.+. .|+. .. ..++.++...|++++|.+.++...+.. ..+...+..++.++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 34444445555555555555555442 2222 11 444445555555555555555544431 1122344455555555
Q ss_pred cCCHHHHHHHHHHHH
Q 048778 843 EGRNKQAKNLVSDLF 857 (902)
Q Consensus 843 ~g~~~~A~~~~~~~~ 857 (902)
.|++++|...+++..
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 555555555555543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.081 Score=53.52 Aligned_cols=295 Identities=13% Similarity=0.136 Sum_probs=141.4
Q ss_pred HHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHH
Q 048778 481 FTSIIDGLCK--LGKPELANGFFGLMVKKGISPDEATITALADG--HCKNGKTGEALMIFERMVQNTDLKTPH--VLNSF 554 (902)
Q Consensus 481 ~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l 554 (902)
|..|-.++.. .|+-..|.+.-.+..+. +..|......++.+ -.-.|+.+.|.+-|+.|... |... -...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4444444433 34555555554443321 22233333344332 23456677777777776652 2211 12222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHH-
Q 048778 555 LDVLCKENKLKEEYAMFGKILKFGLVPS-VVTYTILVDGLFRAGNIALAMSMIEVMKLAG-CPPNVH--TYTVIINGLC- 629 (902)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~--~~~~li~~~~- 629 (902)
.-.--+.|..+.|..+-+..-.. .|. ...+.+.+...|..|+++.|+++++.-.... +.++.. .-..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 22223556666666666555442 222 3455666666667777777777666554422 334432 1222222211
Q ss_pred -h-cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCC
Q 048778 630 -Q-RGRFKEAEMLLFKMFDLGVSPNHIT-YSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASG 706 (902)
Q Consensus 630 -~-~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 706 (902)
. ..+...|...-.+..+ +.||... -..-..++.+.|+..++-.+++.+-+. .|.+.++.... +.+.|
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~--~ar~g---- 308 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYV--RARSG---- 308 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHH--HhcCC----
Confidence 1 1233344443333333 3455322 223345566667777777777766653 44444332221 22333
Q ss_pred ccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 707 VLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHA-FRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMK 785 (902)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 785 (902)
+.... .+-.+++..+.|++..+...++.+-...|++..|..--+
T Consensus 309 -----------------------------------dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 309 -----------------------------------DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred -----------------------------------CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 11111 111222333336666666666666666777776666666
Q ss_pred HHHHcCCCchHhH-HHHHHHHH-ccCChHHHHHHHHHHHHcCCCC
Q 048778 786 DIMKSGVFPAKAI-TSIIGCYC-KERKYDDCLEFMNLILESGFVP 828 (902)
Q Consensus 786 ~~~~~~~~p~~~~-~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p 828 (902)
.+.. ..|.... ..|.+.-. ..|+-.++...+-+.++..-+|
T Consensus 354 aa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 354 AAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 6655 4455544 44444433 3366666666666666543333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00066 Score=56.36 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=24.7
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|.+.++......|.+..++..++..+...|++++|...+....+
T Consensus 49 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 49 KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 555555555555554444444555555555555555555555555443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0039 Score=61.86 Aligned_cols=163 Identities=7% Similarity=-0.019 Sum_probs=115.0
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFY---NFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSII 802 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~ 802 (902)
.+...+......|++++|.+.|+++....|..+... ..++.+|.+.+++++|+..+++.++..+..+.+. ..++
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 344455666777899999999999999988776654 6788999999999999999999998543322222 3333
Q ss_pred HHHHccC---------------C---hHHHHHHHHHHHHcCCCCCH------------------HHHHHHHHHHHhcCCH
Q 048778 803 GCYCKER---------------K---YDDCLEFMNLILESGFVPSF------------------ESHCTVIQGLQSEGRN 846 (902)
Q Consensus 803 ~~~~~~g---------------~---~~~A~~~~~~~~~~~~~p~~------------------~~~~~l~~~l~~~g~~ 846 (902)
.++...+ + ..+|+..++++++. =|+. ..-..++..|.+.|++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y 191 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY 191 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 3321121 1 34677888888864 2331 1112455678999999
Q ss_pred HHHHHHHHHHHhC-CCCCc-chhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 847 KQAKNLVSDLFRY-NGIEE-KAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 847 ~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
.-|+.-++.+++. +..+. ......+..++.+.|..++|.++.+.+..
T Consensus 192 ~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 192 VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 9999999998765 22222 44556778999999999999998877654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0021 Score=63.08 Aligned_cols=113 Identities=14% Similarity=0.071 Sum_probs=88.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCC
Q 048778 641 LFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGS 720 (902)
Q Consensus 641 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (902)
++.-+..+ +-|...|..|...|...|+++.|..-|....+. -.++...+..+...+..+...
T Consensus 145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~---------------- 206 (287)
T COG4235 145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQ---------------- 206 (287)
T ss_pred HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCC----------------
Confidence 33333333 667889999999999999999999999988874 234667777777776555411
Q ss_pred CCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 721 SRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
....++..+|+++++.+|.|+.+...|+..+.+.|++.+|...|+.|++..
T Consensus 207 --------------------~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 207 --------------------QMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred --------------------cccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 167788899999999999999999999999999999999999999998853
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.001 Score=62.33 Aligned_cols=113 Identities=15% Similarity=0.031 Sum_probs=83.8
Q ss_pred cHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH--hH-HHHHHHHHccCChHHHHH
Q 048778 742 DVEHAFRLRDRIESCG--GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK--AI-TSIIGCYCKERKYDDCLE 816 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~-~~l~~~~~~~g~~~~A~~ 816 (902)
.+..+...+..+.+.. ......|..++..+...|++++|+..|++++.....+.. .. ..++.+|...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556666666665444 334667788999999999999999999999875433322 23 888999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHH-------hcCCHHHHHHHHHHH
Q 048778 817 FMNLILESGFVPS-FESHCTVIQGLQ-------SEGRNKQAKNLVSDL 856 (902)
Q Consensus 817 ~~~~~~~~~~~p~-~~~~~~l~~~l~-------~~g~~~~A~~~~~~~ 856 (902)
.++++.+. .|+ ..++..++.++. +.|++++|...++++
T Consensus 94 ~~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 94 YYFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99999874 453 466667777776 788888666666554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.001 Score=70.32 Aligned_cols=124 Identities=12% Similarity=0.177 Sum_probs=95.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 048778 508 GISPDEATITALADGHCKNGKTGEALMIFERMVQN--TDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVT 585 (902)
Q Consensus 508 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 585 (902)
+.+.+......+++.+....+++++..++-+.... ....-+.|..++|..|.+.|..+++..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34557777777888877777888888888877665 2223345566888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQR 631 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 631 (902)
+|.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777666767766666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00072 Score=67.92 Aligned_cols=152 Identities=14% Similarity=0.034 Sum_probs=101.3
Q ss_pred cHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCch-HhH-HHHHHHHHccC
Q 048778 742 DVEHAFRLRDRIESCG------GSTTDFYNFLVVELCRAGRIVEADRIMKDIM----KSGVFPA-KAI-TSIIGCYCKER 809 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~-~~~-~~l~~~~~~~g 809 (902)
.++.|.+.|.+-+++- -....+|-.|++.|+-.|+++.|+...+.=+ +-|-+.. .-. ..+++++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 4556666665544432 1123467788888889999999998765543 2221111 111 78899999999
Q ss_pred ChHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCcchhHHHHHHHHhcCC
Q 048778 810 KYDDCLEFMNLILE----SGFV-PSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN-----GIEEKAAVLPYIEFLLTGD 879 (902)
Q Consensus 810 ~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g 879 (902)
+++.|.+.++.... .|-. ........++..|.-..++++|+.+..+-+... ..-....+..|+.++...|
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 99999999987652 2211 123444567777777788999999999855432 2223445668899999999
Q ss_pred cHhHHHHHHHHHHh
Q 048778 880 ELGKSIDLLNLIDQ 893 (902)
Q Consensus 880 ~~~~a~~~l~~~~~ 893 (902)
..++|....+.-.+
T Consensus 330 ~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 330 EHRKALYFAELHLR 343 (639)
T ss_pred hHHHHHHHHHHHHH
Confidence 99998877665443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00028 Score=54.47 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=43.2
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG-RIVEADRIMKDIMK 789 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 789 (902)
..+..+...|++++|+..|+++++.+|.++.+|..++.+|...| ++++|++.++++++
T Consensus 8 ~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 8 NLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 33334444448888888888888888888888888888888888 68888888888776
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.4e-05 Score=46.79 Aligned_cols=29 Identities=45% Similarity=0.932 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048778 270 TFTTLIHGLCEVGRLDEAFSLKDEMCEKG 298 (902)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 298 (902)
+||+++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0014 Score=69.49 Aligned_cols=48 Identities=8% Similarity=-0.055 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|+..++++++.+|.+..+|..++.+|...|++++|+..|+++++
T Consensus 51 ~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 51 NFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666655
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0024 Score=54.72 Aligned_cols=94 Identities=19% Similarity=0.202 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHHHHcCCCCC----HHHHHH
Q 048778 763 FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILESGFVPS----FESHCT 835 (902)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ 835 (902)
....+++++-..|+.++|+.+|++.+..|+...... ..++..|...|++++|..++++.... .|+ ......
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHH
Confidence 456678888889999999999999988876655333 67788888999999999999988864 233 233344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 048778 836 VIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 836 l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
++.++...|+.++|+..+-..+.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 55677888999999888877543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.017 Score=51.94 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH----HHHHHHHHccCChHHHHH
Q 048778 742 DVEHAFRLRDRIESCG-GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI----TSIIGCYCKERKYDDCLE 816 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~l~~~~~~~g~~~~A~~ 816 (902)
+..||...|++.+.-- ..|+..+..++++....++..+|...++++.+.. |+.-+ ..+++.|...|++++|..
T Consensus 104 r~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll~aR~laa~g~~a~Aes 181 (251)
T COG4700 104 RYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHLLFARTLAAQGKYADAES 181 (251)
T ss_pred hhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchHHHHHHHHhcCCchhHHH
Confidence 4444444444433321 3444445555555555555555555555554422 22111 334445555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 817 FMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVS 854 (902)
Q Consensus 817 ~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~ 854 (902)
-|+.+... -|++..-......+.++|+.++|..-+.
T Consensus 182 afe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 182 AFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 55555543 3444444444444555555555444333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00093 Score=62.61 Aligned_cols=76 Identities=5% Similarity=-0.064 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHH-------ccC
Q 048778 742 DVEHAFRLRDRIESCGGS---TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYC-------KER 809 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~-------~~g 809 (902)
++++|...|++++...+. .+.+|..++..|...|++++|+..+++++. +.|+... ..++..|. ..|
T Consensus 50 ~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la~i~~~~~~~~~~~g 127 (168)
T CHL00033 50 EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMAVICHYRGEQAIEQG 127 (168)
T ss_pred CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHhhHHHHHcc
Confidence 666666666666655422 234566666666666777777776666665 2333322 44444444 445
Q ss_pred ChHHHHHHHH
Q 048778 810 KYDDCLEFMN 819 (902)
Q Consensus 810 ~~~~A~~~~~ 819 (902)
++++|...++
T Consensus 128 ~~~~A~~~~~ 137 (168)
T CHL00033 128 DSEIAEAWFD 137 (168)
T ss_pred cHHHHHHHHH
Confidence 5554444433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.007 Score=62.08 Aligned_cols=81 Identities=16% Similarity=0.097 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---HhH----HHHHHHHHcc
Q 048778 742 DVEHAFRLRDRIESCG--GST----TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA---KAI----TSIIGCYCKE 808 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~----~~l~~~~~~~ 808 (902)
++++|.+.|+++.+.. ... ..++..++..+.+.|++++|+++|+++.......+ ... ...+-++...
T Consensus 130 d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~ 209 (282)
T PF14938_consen 130 DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAM 209 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHc
Confidence 6666666666666553 111 22344555666666666666666666654322111 001 1223344555
Q ss_pred CChHHHHHHHHHHH
Q 048778 809 RKYDDCLEFMNLIL 822 (902)
Q Consensus 809 g~~~~A~~~~~~~~ 822 (902)
|+...|...+++..
T Consensus 210 ~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 210 GDYVAARKALERYC 223 (282)
T ss_dssp T-HHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666666654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00012 Score=45.83 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048778 164 CYSCLLMSLAKLDLGFVAYAVFVKLIADGF 193 (902)
Q Consensus 164 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~ 193 (902)
+||+++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0043 Score=58.35 Aligned_cols=94 Identities=12% Similarity=0.033 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhh
Q 048778 654 ITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN--SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYE 731 (902)
Q Consensus 654 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (902)
..+..+...+...|++++|...+++.++....+. ...+..+...+.+.|
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g----------------------------- 86 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG----------------------------- 86 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC-----------------------------
Confidence 3455556666666777777777766665322221 245555555666666
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
++++|...++++++..|.+...+..++..|...|+...+..-++.
T Consensus 87 ----------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 87 ----------EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred ----------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHH
Confidence 777777777777777777777777777777777765555444333
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0019 Score=68.26 Aligned_cols=120 Identities=17% Similarity=0.148 Sum_probs=64.4
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 302 STRTYTVLIKALCDISLTDKALSLFDEMVVK--RCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVL 379 (902)
Q Consensus 302 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 379 (902)
+......+++.+....+++.+..++-..... ....-..|..++|..|.+.|..+++..++..=..-|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4445555555555555555555555555443 11112234445666666666666666666555555666666666666
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 048778 380 INGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRM 421 (902)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 421 (902)
++.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666655555554444445554444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0043 Score=63.63 Aligned_cols=166 Identities=16% Similarity=0.117 Sum_probs=110.4
Q ss_pred chhhhhhhhhhhhccHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCchHhH
Q 048778 728 DDYERSSKNFLREMDVEHAFRLRDRIESCG--GST----TDFYNFLVVELCRAGRIVEADRIMKDIMKS---GVFPAKAI 798 (902)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~ 798 (902)
+.|...+..+...+++++|.+.|.++.... ..+ ...|...+..|.+. ++++|++.++++.+. .-.|+...
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 344445555666669999998888876553 111 23455555555444 999999999998642 12344433
Q ss_pred ---HHHHHHHHcc-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----
Q 048778 799 ---TSIIGCYCKE-RKYDDCLEFMNLILES----GFVPS--FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE---- 864 (902)
Q Consensus 799 ---~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~---- 864 (902)
..++..|... |++++|+++++++.+. + .+. ..++..++.++.+.|++++|+++|++........+
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 7888889998 9999999999999842 2 222 36778889999999999999999999876543222
Q ss_pred -c-hhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 865 -K-AAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 865 -~-~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
. ..+...+-.++..|+.-.|.+.+++.....
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1 123344456778999999999999887654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.27 Score=53.58 Aligned_cols=201 Identities=11% Similarity=-0.010 Sum_probs=101.5
Q ss_pred CcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHH----------HHHhcCChhHHHHHHHHHHHCC
Q 048778 229 CLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIH----------GLCEVGRLDEAFSLKDEMCEKG 298 (902)
Q Consensus 229 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~----------~~~~~g~~~~A~~~~~~m~~~g 298 (902)
.|.+..|..|.....+.-+++.|...|-+...-.|+ ....-|-. .-.--|++++|.++|-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gi----k~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGI----KLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccch----hHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 455666666666655556666666666555433222 11111110 1122467777777777665542
Q ss_pred CCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHH
Q 048778 299 WQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPN----AHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVV 374 (902)
Q Consensus 299 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 374 (902)
.-|..+.+.|++-...++++. .|...| ...++.+.+.+.....+++|.+.+..... .
T Consensus 765 ---------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~- 825 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T- 825 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h-
Confidence 234455566666555554432 111111 34566666666666667777666655432 1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 048778 375 TYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFC 454 (902)
Q Consensus 375 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 454 (902)
...+.++.+..++++-..+...+. .|....-.+.+.+.+.|.-++|.+.+-+-.. |. ..+..|.
T Consensus 826 --e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv 889 (1189)
T KOG2041|consen 826 --ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCV 889 (1189)
T ss_pred --HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHH
Confidence 123444554444444443333332 2444455566666677777766655533211 11 2344555
Q ss_pred hcCCHHHHHHHHHH
Q 048778 455 REGQLDIALKIFNS 468 (902)
Q Consensus 455 ~~g~~~~A~~~~~~ 468 (902)
..+++.+|.++-+.
T Consensus 890 ~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHh
Confidence 55666666655443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0021 Score=52.60 Aligned_cols=77 Identities=19% Similarity=0.361 Sum_probs=41.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CcCHhhHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 273 TLIHGLCEVGRLDEAFSLKDEMCEKGW-QPSTRTYTVLIKALCDIS--------LTDKALSLFDEMVVKRCKPNAHTYTV 343 (902)
Q Consensus 273 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~~ 343 (902)
..|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555666666666666666666 566666666665555431 22334445555555555555555555
Q ss_pred HHHHHH
Q 048778 344 LIDRLC 349 (902)
Q Consensus 344 li~~~~ 349 (902)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 554443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0023 Score=52.43 Aligned_cols=75 Identities=20% Similarity=0.337 Sum_probs=39.4
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048778 345 IDRLCREGKIDEANGMCGKMLQDGH-FPGVVTYNVLINGYCKQG--------RIIAAFELLALMEKRTCKPNIRTYNELM 415 (902)
Q Consensus 345 i~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~t~~~li 415 (902)
|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.++++|...+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 555555555555544321 2233445556666666666666666665
Q ss_pred HHHH
Q 048778 416 EGLC 419 (902)
Q Consensus 416 ~~~~ 419 (902)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0005 Score=52.88 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=47.0
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 739 REMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
+.|++++|.+.|+++++.+|.+..++..++.+|.+.|++++|.++++++... .|+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCH
Confidence 3458999999999999999999999999999999999999999999998874 3554
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.045 Score=54.35 Aligned_cols=193 Identities=16% Similarity=0.078 Sum_probs=107.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HH---HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 048778 623 VIINGLCQRGRFKEAEMLLFKMFDLGVSPNH-IT---YSILVRAHASTGRLDHAFKIVSFMVAN-GCQLNSNVYSALLAG 697 (902)
Q Consensus 623 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~l~~~ 697 (902)
.....+...|++++|++.|+++... .|+. .. .-.++.++.+.+++++|...+++.++. +-.|+. -+.....+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g 113 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRG 113 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHH
Confidence 3444456677777777777777764 2332 22 234566777788888888888877764 112221 22222222
Q ss_pred HHh--cCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 048778 698 LVS--SNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG 775 (902)
Q Consensus 698 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 775 (902)
++. .+. ..+...... + ..........+|.+.|+++++..|.+..
T Consensus 114 ~~~~~~~~--~~~~~~~~~-----------~--------~~~rD~~~~~~A~~~~~~li~~yP~S~y------------- 159 (243)
T PRK10866 114 LTNMALDD--SALQGFFGV-----------D--------RSDRDPQHARAAFRDFSKLVRGYPNSQY------------- 159 (243)
T ss_pred Hhhhhcch--hhhhhccCC-----------C--------ccccCHHHHHHHHHHHHHHHHHCcCChh-------------
Confidence 221 110 000000000 0 0000011456788888999888876653
Q ss_pred CHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 776 RIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILES-GFVP-SFESHCTVIQGLQSEGRNKQAKNLV 853 (902)
Q Consensus 776 ~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~ 853 (902)
..+|...+..+.+. -......++.-|.+.|.+.-|..-++.+++. .-.| ..+....++.+|.+.|..++|....
T Consensus 160 -a~~A~~rl~~l~~~---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 160 -TTDATKRLVFLKDR---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred -HHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34444433333220 0001156778888999999999999988853 1122 3477777888898999999998877
Q ss_pred HHH
Q 048778 854 SDL 856 (902)
Q Consensus 854 ~~~ 856 (902)
..+
T Consensus 236 ~~l 238 (243)
T PRK10866 236 KII 238 (243)
T ss_pred HHH
Confidence 664
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.02 Score=63.44 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|...++++++++| +..+|..++..+...|+.++|.+.|+++..
T Consensus 435 ~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 435 KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555554 345555555555555555555555555555
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0026 Score=63.50 Aligned_cols=87 Identities=8% Similarity=-0.032 Sum_probs=51.0
Q ss_pred hhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCCh
Q 048778 738 LREMDVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKY 811 (902)
Q Consensus 738 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~ 811 (902)
.+.|++++|...|+..++..|.+ +.++..++..|...|++++|+..|+++++..+...... ..++.+|...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 34456677777777776666555 35666666666666777777766666665322111111 4445556666666
Q ss_pred HHHHHHHHHHHHc
Q 048778 812 DDCLEFMNLILES 824 (902)
Q Consensus 812 ~~A~~~~~~~~~~ 824 (902)
++|..+++++++.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.004 Score=55.56 Aligned_cols=87 Identities=11% Similarity=-0.047 Sum_probs=71.5
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
..+...|++++|..+|.-+.-.++.+..-|..|+.++-..|++++|+..|..+.... +++.. ...+.||...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHH
Confidence 334455599999999999988888888889999999999999999999998887643 33333 88889999999999
Q ss_pred HHHHHHHHHHH
Q 048778 813 DCLEFMNLILE 823 (902)
Q Consensus 813 ~A~~~~~~~~~ 823 (902)
+|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988877
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=51.04 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccC-ChHHHHHHHHHHHH
Q 048778 760 TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKER-KYDDCLEFMNLILE 823 (902)
Q Consensus 760 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g-~~~~A~~~~~~~~~ 823 (902)
++..|..++..+...|++++|+..|+++++ ..|+... ..++.+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 456677777777777777777777777777 3455544 67777777777 57777777777665
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.013 Score=61.48 Aligned_cols=143 Identities=8% Similarity=0.010 Sum_probs=108.3
Q ss_pred cHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHc
Q 048778 742 DVEHAFRLRDRIE---SCGGSTTDFYNFLVVELCRA---------GRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCK 807 (902)
Q Consensus 742 ~~~~A~~~~~~~~---~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~ 807 (902)
..+.|..+|.+++ +.+|....+|..++.++... ....+|.++.+++++ +.|++.. ..++.+...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 7889999999999 77788899999988877644 245678888888888 5566655 778888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-chhHHHHHHHHhcCCcHhHHH
Q 048778 808 ERKYDDCLEFMNLILESGFVPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE-KAAVLPYIEFLLTGDELGKSI 885 (902)
Q Consensus 808 ~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~ 885 (902)
.|+++.|...|+++... .|+. .+|...+..+.-.|+.++|.+.++++++..+..- ..+....++.|+.+ ..++|+
T Consensus 351 ~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 351 SGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred hcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88999999999999884 6764 7888888888999999999999999876643322 22333334455544 356666
Q ss_pred HHHH
Q 048778 886 DLLN 889 (902)
Q Consensus 886 ~~l~ 889 (902)
+++-
T Consensus 428 ~~~~ 431 (458)
T PRK11906 428 KLYY 431 (458)
T ss_pred HHHh
Confidence 6654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0019 Score=50.51 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=52.2
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
.+.+.+++++|.+.++.++..+|.++..|...+.++...|++++|.+.++++++. .|+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 3455569999999999999999999999999999999999999999999999984 455544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.15 Score=48.71 Aligned_cols=151 Identities=12% Similarity=0.017 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 600 ALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFM 679 (902)
Q Consensus 600 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 679 (902)
+..+++|++-.. ...+.++..+.-.|.+.-...++.+.++..-+.++...+.|++.-.+.|+.+.|...+++.
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 445555554332 2345666777777888888888888888765667888888999889999999999999877
Q ss_pred HHCCCCCCHHHHHHHH-----HHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHH
Q 048778 680 VANGCQLNSNVYSALL-----AGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIE 754 (902)
Q Consensus 680 ~~~g~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 754 (902)
.+..-..|..+.+.++ ..+.-+. ++.+|.+.+.+++
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~n---------------------------------------n~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQN---------------------------------------NFAEAHRFFTEIL 279 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheeccc---------------------------------------chHHHHHHHhhcc
Confidence 6532222322222222 2222222 8999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH
Q 048778 755 SCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 755 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
..+|.++..-|.-+-++.-.|+..+|++..+.|.. ..|...+
T Consensus 280 ~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l 321 (366)
T KOG2796|consen 280 RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYL 321 (366)
T ss_pred ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccch
Confidence 99999999999888888888999999999999988 5566655
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.013 Score=50.30 Aligned_cols=48 Identities=25% Similarity=0.208 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
+.++|+.+|++.++.+... ...+..++..|...|++++|+.++++...
T Consensus 16 ~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 16 REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444443111 23444444555555555555555555444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0022 Score=48.68 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=30.2
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 801 IIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 801 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
++..+...|++++|...++++++. .| +...+..++.++...|++++|+..++++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555555555555555555543 23 2355555555555555555555555555443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.02 Score=55.30 Aligned_cols=156 Identities=14% Similarity=0.046 Sum_probs=104.9
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSII 802 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~ 802 (902)
.+...+......|++++|.+.|+++....|.+ ..+...++.++.+.|++++|...++..++.-+...... ..++
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 34455666677779999999999999987554 56788899999999999999999999988654333222 3444
Q ss_pred HHHHc-----------cCChHHHHHHHHHHHHcCCCCCH------------------HHHHHHHHHHHhcCCHHHHHHHH
Q 048778 803 GCYCK-----------ERKYDDCLEFMNLILESGFVPSF------------------ESHCTVIQGLQSEGRNKQAKNLV 853 (902)
Q Consensus 803 ~~~~~-----------~g~~~~A~~~~~~~~~~~~~p~~------------------~~~~~l~~~l~~~g~~~~A~~~~ 853 (902)
.++.. .+...+|...++.+++. =|+. ..-..++..|.+.|++..|+.-+
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~--yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR--YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHHHHH--CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 44332 23456888888888864 2321 11234567889999999999999
Q ss_pred HHHHhCCCC-Cc-chhHHHHHHHHhcCCcHhHHHH
Q 048778 854 SDLFRYNGI-EE-KAAVLPYIEFLLTGDELGKSID 886 (902)
Q Consensus 854 ~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~ 886 (902)
+.+++.-+. +. ...+..++.++.+.|..+.+.+
T Consensus 165 ~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 165 QYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 998876322 22 3355677888999998885543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0089 Score=55.75 Aligned_cols=105 Identities=15% Similarity=0.209 Sum_probs=58.1
Q ss_pred CCCHhhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 048778 265 RPNSVTFTTLIHGLCEV-----GRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAH 339 (902)
Q Consensus 265 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 339 (902)
..|-.+|..+++.|.+. |.++-....++.|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 35666666666666543 5555566666667677777777777766665543 2111 00111111
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 048778 340 TYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGR 388 (902)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 388 (902)
..-|- .+-+-|.+++++|...|+-||..++..+++.|.+.+.
T Consensus 112 -----F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 -----FMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----hccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 1344566777777777777777777777777665543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.013 Score=59.91 Aligned_cols=116 Identities=7% Similarity=0.020 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 584 VTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIING-LCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRA 662 (902)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 662 (902)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 345566666666666666666666665432 2223333333333 22234455566666666644 34455556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcC
Q 048778 663 HASTGRLDHAFKIVSFMVANGCQLNS---NVYSALLAGLVSSN 702 (902)
Q Consensus 663 ~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~l~~~~~~~~ 702 (902)
+.+.|+.+.|..+|++.+.. +.++. ..|...+..=.+.|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcC
Confidence 66666666666666666543 22221 24444444444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.011 Score=60.42 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhc-cCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHH
Q 048778 199 DYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCR-GNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHG 277 (902)
Q Consensus 199 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~ 277 (902)
+|..+++..-+.+..+.|+.+|.++.+.+ ..+..+|.....+-.+ .++.+.|.++|+...+ .++.+...|..-++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 34444455555555555555555554332 1112222222222122 2334445555555554 233444455555555
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 048778 278 LCEVGRLDEAFSLKDEMCEK 297 (902)
Q Consensus 278 ~~~~g~~~~A~~~~~~m~~~ 297 (902)
+.+.++.+.|..+|++....
T Consensus 80 l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh
Confidence 55555555555555555443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.014 Score=58.41 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=75.5
Q ss_pred HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCchHh----H-HHHHHHHHccCChHHHHHHHHHHHHcC-CCC-CHHH
Q 048778 761 TDFYNFLVVE-LCRAGRIVEADRIMKDIMKSGVFPAKA----I-TSIIGCYCKERKYDDCLEFMNLILESG-FVP-SFES 832 (902)
Q Consensus 761 ~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~----~-~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~ 832 (902)
...+...+.. +.+.|++++|+..|+.+++.. |+.. . ..++.+|...|++++|...|+.+++.- -.| ..+.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 3344444444 466799999999999999854 4432 2 888999999999999999999998641 111 2477
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 833 HCTVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 833 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
+..++.++...|+.++|..++++.++..+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 777888899999999999999998766543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.028 Score=50.31 Aligned_cols=100 Identities=8% Similarity=0.053 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048778 759 STTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQ 838 (902)
Q Consensus 759 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 838 (902)
.........+..+...|++++|..+|+-+.-.+......+..|+.+|-..+++++|+..+..+...+ .-|+..+...+.
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agq 113 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHH
Confidence 3445567788888999999999999999877432222222888889999999999999999887543 234555677899
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 048778 839 GLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 839 ~l~~~g~~~~A~~~~~~~~~~ 859 (902)
++...|+.++|..-|+.+...
T Consensus 114 C~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHhC
Confidence 999999999999999998764
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.017 Score=56.90 Aligned_cols=155 Identities=12% Similarity=-0.011 Sum_probs=119.4
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH---hH--HHHHHHHHccCC
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK---AI--TSIIGCYCKERK 810 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~--~~l~~~~~~~g~ 810 (902)
..|..|+..+|-...+++++..|.|..++.---.++.-.|+.+.-...+++++.. ..++. .+ ..++.++...|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4566779999999999999999999999999999999999999999999998753 34444 33 566777889999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-----chhHHHHHHHHhcCCcHhHHH
Q 048778 811 YDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE-----KAAVLPYIEFLLTGDELGKSI 885 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~ 885 (902)
+++|.+..++..+.+ .-|..+...+++++...|+..++.+++.+-- -.+..+ ...| +..-.+...+.|+.|+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te-d~Wr~s~mlasHNyW-H~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTE-DDWRQSWMLASHNYW-HTALFHIEGAEYEKAL 267 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcc-cchhhhhHHHhhhhH-HHHHhhhcccchhHHH
Confidence 999999999998864 4467777888999999999999999998731 111111 1123 3344466779999999
Q ss_pred HHHHHHHhc
Q 048778 886 DLLNLIDQV 894 (902)
Q Consensus 886 ~~l~~~~~~ 894 (902)
++++.=.-+
T Consensus 268 eIyD~ei~k 276 (491)
T KOG2610|consen 268 EIYDREIWK 276 (491)
T ss_pred HHHHHHHHH
Confidence 998754433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.041 Score=57.95 Aligned_cols=109 Identities=9% Similarity=-0.020 Sum_probs=91.1
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
+..+|.++.+++++.++.|+.+...++.++...++++.|...|+++.. +.|+... ...++.+...|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999998 6688776 777888889999999999999
Q ss_pred HHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 820 LILESGFVPSF---ESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 820 ~~~~~~~~p~~---~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
+..+. .|-- ......++.|+ ....++|+.+|-+
T Consensus 397 ~alrL--sP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQL--EPRRRKAVVIKECVDMYV-PNPLKNNIKLYYK 432 (458)
T ss_pred HHhcc--CchhhHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence 98774 5643 33333444554 4567888888876
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.021 Score=53.35 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=36.9
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------CChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048778 352 GKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQ----------------GRIIAAFELLALMEKRTCKPNIRTYNELM 415 (902)
Q Consensus 352 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g~~~~A~~~~~~m~~~~~~p~~~t~~~li 415 (902)
|.++-....+..|.+-|+.-|..+|+.|++.+=+. .+.+-|++++++|...|+-||..|+..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 33444444444444444444555555444444321 12345566666666666666666666666
Q ss_pred HHHHhcC
Q 048778 416 EGLCRMN 422 (902)
Q Consensus 416 ~~~~~~g 422 (902)
+.+.+.+
T Consensus 146 ~iFG~~s 152 (228)
T PF06239_consen 146 NIFGRKS 152 (228)
T ss_pred HHhcccc
Confidence 6655444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=1 Score=49.30 Aligned_cols=203 Identities=14% Similarity=0.084 Sum_probs=127.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCc--------CHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCC
Q 048778 194 VLSAIDYRSVINALCKSGLVRAGEMFFCRVLKH-GFCL--------DTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASY 264 (902)
Q Consensus 194 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 264 (902)
.|.+..|..+...-...-.++.|+..|-+.... |+.. +.....+=|.+ --|++++|.+++-.|..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh---
Confidence 477777877777666666677777666443221 1110 11111111222 248899999999888763
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 048778 265 RPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPS----TRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHT 340 (902)
Q Consensus 265 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 340 (902)
| ..|..+.+.|++-...++++. .|-..| ...++.+...++....+++|.+.+..-..
T Consensus 764 --D-----LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------- 824 (1189)
T KOG2041|consen 764 --D-----LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------- 824 (1189)
T ss_pred --h-----hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence 3 235566677777777666543 121111 34677888888888888888888865321
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048778 341 YTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCR 420 (902)
Q Consensus 341 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 420 (902)
-...+.+|.+..++++-+.+-..+.+ |....-.+..++...|.-++|.+.+-+--. |. ..+..|..
T Consensus 825 ~e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~ 890 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVE 890 (1189)
T ss_pred hHhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHH
Confidence 12356677777777776666555544 555667788899999999988887654321 11 34566777
Q ss_pred cCCHHHHHHHHHHH
Q 048778 421 MNKSYKAVHLLKRV 434 (902)
Q Consensus 421 ~g~~~~A~~~~~~~ 434 (902)
.+++.+|.++-+..
T Consensus 891 LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888776654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.15 Score=49.35 Aligned_cols=179 Identities=16% Similarity=0.125 Sum_probs=94.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHh
Q 048778 625 INGLCQRGRFKEAEMLLFKMFDLG--VSPNHITYSILVRAHASTGRLDHAFKIVSFMVAN-GCQLNS-NVYSALLAGLVS 700 (902)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~-~~~~~l~~~~~~ 700 (902)
...+...|++.+|+..|+.+...- -+--....-.++.++.+.|++++|...+++.++. +-.|.. ..+-.++.++..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 334556666677777666666431 0111334445666667777777777777766653 111111 111111111111
Q ss_pred cCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 701 SNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEA 780 (902)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 780 (902)
... +.. ......+...+|...|+.+++..|.+.. ..+|
T Consensus 92 ~~~--~~~--------------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y--------------~~~A 129 (203)
T PF13525_consen 92 QIP--GIL--------------------------RSDRDQTSTRKAIEEFEELIKRYPNSEY--------------AEEA 129 (203)
T ss_dssp HHH--HHH---------------------------TT---HHHHHHHHHHHHHHHH-TTSTT--------------HHHH
T ss_pred hCc--cch--------------------------hcccChHHHHHHHHHHHHHHHHCcCchH--------------HHHH
Confidence 110 000 0001112677888888888888777663 4445
Q ss_pred HHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 048778 781 DRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPS----FESHCTVIQGLQSEGRNKQAK 850 (902)
Q Consensus 781 ~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~l~~~g~~~~A~ 850 (902)
...+..+.+. -......++..|.+.|.+..|..-++.+++. =|+ .+....++..+.+.|..+.|.
T Consensus 130 ~~~l~~l~~~---la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 130 KKRLAELRNR---LAEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4444444321 0011156788899999999999999998864 233 256677888888889887544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0044 Score=47.51 Aligned_cols=51 Identities=22% Similarity=0.406 Sum_probs=21.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 048778 773 RAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
+.|++++|++.|+++....+....+...++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555442211111114444445555555555555554443
|
... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.012 Score=61.57 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=74.3
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCchH------------
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG---VFPAK------------ 796 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~------------ 796 (902)
......|+..+.+.-++.-+++++.+|.-..+|..|+. .......+|+++++++++.| +..+.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 34456788889999999999999998888888887764 22345788888888887543 11110
Q ss_pred ---------hH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 797 ---------AI-TSIIGCYCKERKYDDCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 797 ---------~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
.. ..++.++.+.|+.+||++.+++|.+.....| ......|+.+|...+.+.++..++.+.
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 01 3445555556666666666666653211111 233444555555666666666665553
|
The molecular function of this protein is uncertain. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.29 Score=46.94 Aligned_cols=98 Identities=15% Similarity=0.025 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHH--
Q 048778 199 DYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIH-- 276 (902)
Q Consensus 199 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~-- 276 (902)
.-+++++.+...|.+.-....+.++++...+.++.....|.++-.+.||.+.|...|+...+..+ ..|..+.+.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhh
Confidence 45666777777788888888888888877677788888888888888888888888887765411 223333333322
Q ss_pred ---HHHhcCChhHHHHHHHHHHHC
Q 048778 277 ---GLCEVGRLDEAFSLKDEMCEK 297 (902)
Q Consensus 277 ---~~~~~g~~~~A~~~~~~m~~~ 297 (902)
.+.-++++..|...+.+....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred hhhheecccchHHHHHHHhhcccc
Confidence 233344555555555554443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.027 Score=57.66 Aligned_cols=79 Identities=13% Similarity=0.103 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH-HHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD-DCLEFM 818 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~-~A~~~~ 818 (902)
++.+|++.-++.++.+|+|.-++..-+.++...|+++.|+..|+++++ +.|++.. ..|+.+-.+...+. ...++|
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666666666666666666665 4444433 33333333322222 224455
Q ss_pred HHHH
Q 048778 819 NLIL 822 (902)
Q Consensus 819 ~~~~ 822 (902)
.+|.
T Consensus 350 ~~mF 353 (397)
T KOG0543|consen 350 ANMF 353 (397)
T ss_pred HHHh
Confidence 5554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.16 Score=54.69 Aligned_cols=96 Identities=10% Similarity=0.122 Sum_probs=66.1
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH--
Q 048778 753 IESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPSF-- 830 (902)
Q Consensus 753 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-- 830 (902)
..+.+..+..+...++..+.+...+.-|-++|++|-+. ..+.......+++.+|..+.++..+. .||.
T Consensus 739 ~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~ 808 (1081)
T KOG1538|consen 739 ARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYM 808 (1081)
T ss_pred HhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCccc--cccccc
Confidence 33334455666777777777888888999999887431 35778889999999999999987663 4543
Q ss_pred ---------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 831 ---------ESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 831 ---------~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
+-+...-.++.+.|+.+||..+++++..
T Consensus 809 pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 809 PYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 1112222466777777778777777533
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.97 Score=46.21 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=89.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHH---HccCChHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCY---CKERKYDDCLEFM 818 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~---~~~g~~~~A~~~~ 818 (902)
..++|.++++.+....|..+..+..-+..+.+.++.+++.+++.+|+..-..++.....++..+ .. .....|...+
T Consensus 102 ~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~l 180 (278)
T PF08631_consen 102 SVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCL 180 (278)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHH
Confidence 6677888888887666777887777777777789999999999999975432444434444433 33 3346677777
Q ss_pred HHHHHcCCCCCHHHHH--HHHH---HHHhcCC------HHHHHHHHHHH---HhCCCCCcchhH-H----HHHHHHhcCC
Q 048778 819 NLILESGFVPSFESHC--TVIQ---GLQSEGR------NKQAKNLVSDL---FRYNGIEEKAAV-L----PYIEFLLTGD 879 (902)
Q Consensus 819 ~~~~~~~~~p~~~~~~--~l~~---~l~~~g~------~~~A~~~~~~~---~~~~~~~~~~~~-~----~l~~~~~~~g 879 (902)
..++...+.|....+. .++. .....++ .+...++++.. ...+..+..... . .-+..+++.+
T Consensus 181 d~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k 260 (278)
T PF08631_consen 181 DYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAK 260 (278)
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777544566553121 1111 1122211 44444444432 233444443221 1 2245578899
Q ss_pred cHhHHHHHHHHHH
Q 048778 880 ELGKSIDLLNLID 892 (902)
Q Consensus 880 ~~~~a~~~l~~~~ 892 (902)
+|++|.+.++--.
T Consensus 261 ~y~~A~~w~~~al 273 (278)
T PF08631_consen 261 NYDEAIEWYELAL 273 (278)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998543
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.091 Score=57.90 Aligned_cols=115 Identities=17% Similarity=0.092 Sum_probs=91.0
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCc-hHhH-HHHHHHHHccCChHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG--VFP-AKAI-TSIIGCYCKERKYDDCLEF 817 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~~-~~l~~~~~~~g~~~~A~~~ 817 (902)
+.+.|.++++.+.+..|....-...-++.+...|+.++|++.|+++.... .+. .... .-+++++.-.++|++|.+.
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 89999999999999999888888888999999999999999999876421 111 2222 7889999999999999999
Q ss_pred HHHHHHcCCCCCHHHHH-HHHHHHHhcCCH-------HHHHHHHHHHH
Q 048778 818 MNLILESGFVPSFESHC-TVIQGLQSEGRN-------KQAKNLVSDLF 857 (902)
Q Consensus 818 ~~~~~~~~~~p~~~~~~-~l~~~l~~~g~~-------~~A~~~~~~~~ 857 (902)
+..+.+.+ ..+...|. ..+.++...|+. ++|.++++++.
T Consensus 328 f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 328 FLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 99999753 33344443 344566778888 89999998864
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.87 Score=45.18 Aligned_cols=222 Identities=20% Similarity=0.161 Sum_probs=142.6
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 596 AGNIALAMSMIEVMKLAGCP-PNVHTYTVIINGLCQRGRFKEAEMLLFKMFDL-GVSPNHITYSILVRAHASTGRLDHAF 673 (902)
Q Consensus 596 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~ 673 (902)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666666666666654321 12466667777778888888888877777642 23455666667777777778888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHH
Q 048778 674 KIVSFMVANGCQLNSNVYSALLA-GLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDR 752 (902)
Q Consensus 674 ~~~~~m~~~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 752 (902)
+.+.........+ ......... .+...+ ++++|...+++
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------------------------------------~~~~a~~~~~~ 155 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELG---------------------------------------DYEEALELYEK 155 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcC---------------------------------------CHHHHHHHHHH
Confidence 8888777532222 111112222 455555 88888888888
Q ss_pred HHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--HhH-HHHHHHHHccCChHHHHHHHHHHHHcCC
Q 048778 753 IESCGG---STTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA--KAI-TSIIGCYCKERKYDDCLEFMNLILESGF 826 (902)
Q Consensus 753 ~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 826 (902)
+....+ .....+......+...++.++|...+.++... .++ ... ..+...+...+++++|...+......
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-- 231 (291)
T COG0457 156 ALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-- 231 (291)
T ss_pred HHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--
Confidence 866444 23445555555567778888888888888773 333 222 77777788888888888888888764
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 827 VPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 827 ~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
.|+ ...+......+...|..+++...+++..+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 232 DPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 343 34455555555566778888888887755543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.016 Score=60.85 Aligned_cols=100 Identities=10% Similarity=0.022 Sum_probs=68.7
Q ss_pred CcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHH
Q 048778 723 LEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTD---FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAIT 799 (902)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 799 (902)
.+.+.+.+.+.+..+.+.|++++|...|+++++.+|.+.. +|+.++.+|...|+.++|++.++++++.+ +... .
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n~~f-~ 147 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--NLKF-S 147 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--chhH-H
Confidence 4445577788888888899999999999999888888774 48889999999999999999999888742 1111 1
Q ss_pred HHHH--HHHccCChHHHHHHHHHHHHcC
Q 048778 800 SIIG--CYCKERKYDDCLEFMNLILESG 825 (902)
Q Consensus 800 ~l~~--~~~~~g~~~~A~~~~~~~~~~~ 825 (902)
.+.. .+....+..+..++++.+.+.|
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhC
Confidence 1110 1112223346666677666655
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.021 Score=58.43 Aligned_cols=123 Identities=14% Similarity=0.055 Sum_probs=91.6
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCC---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGG---------------STTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
.+..+++.|++..|...|++++..-. .-..+++.|+.+|.+.+++.+|++...+.+. ..|+++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~N~ 291 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE--LDPNNV 291 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh--cCCCch
Confidence 34567777799999999888654421 1135677888899999999999999999998 556665
Q ss_pred H--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 048778 798 I--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF-ESHCTVIQGLQSEGRN-KQAKNLVSDLFRY 859 (902)
Q Consensus 798 ~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g~~-~~A~~~~~~~~~~ 859 (902)
- ..-+.+|...|+++.|...|+++++. .|+. .+-..++.+-.+..+. +...++|.+|...
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5 88899999999999999999999884 7866 4445555555555444 4457888888654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.4 Score=51.88 Aligned_cols=42 Identities=7% Similarity=0.002 Sum_probs=28.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 048778 177 LGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFC 221 (902)
Q Consensus 177 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 221 (902)
.+-+.+.-+++|.+.|-.|+.... ...|+-.|++.+|.++|.
T Consensus 615 ~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 615 RYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH
Confidence 344556667778888877877643 334666788888888874
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.24 Score=46.02 Aligned_cols=177 Identities=11% Similarity=-0.032 Sum_probs=90.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCc
Q 048778 628 LCQRGRFKEAEMLLFKMFDLGVSPN-HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN--SNVYSALLAGLVSSNKA 704 (902)
Q Consensus 628 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~~~~ 704 (902)
|-..|-+.-|..-|.+... +.|+ ...||.+.--+...|+++.|.+.|+...+ +.|. ....|.-+..|
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~Y------ 144 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALY------ 144 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeee------
Confidence 4445555666655555554 3455 55667776667777777777777777765 3332 11111111111
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHhcCCHHHHHH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTD--FYNFLVVELCRAGRIVEADR 782 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~ 782 (902)
--|+++-|.+-+...-+.+|.|+. .|..+. ...=+..+|..
T Consensus 145 ----------------------------------Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~t 187 (297)
T COG4785 145 ----------------------------------YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKT 187 (297)
T ss_pred ----------------------------------ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHH
Confidence 112777777777777666666653 222211 12224555554
Q ss_pred HH-HHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 783 IM-KDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVP------SFESHCTVIQGLQSEGRNKQAKNLVS 854 (902)
Q Consensus 783 ~~-~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~l~~~g~~~~A~~~~~ 854 (902)
-+ ++... ..+... ..++.-|...=.. ..+++++....-+. -.++|..++.-+...|+.++|..+|+
T Consensus 188 nL~qR~~~---~d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 188 NLKQRAEK---SDKEQWGWNIVEFYLGKISE---ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred HHHHHHHh---ccHhhhhHHHHHHHHhhccH---HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 43 33322 122333 5555555432222 22333333211011 13677777777777788888877777
Q ss_pred HHH
Q 048778 855 DLF 857 (902)
Q Consensus 855 ~~~ 857 (902)
-++
T Consensus 262 Lai 264 (297)
T COG4785 262 LAV 264 (297)
T ss_pred HHH
Confidence 653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0035 Score=39.83 Aligned_cols=33 Identities=18% Similarity=0.096 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 750 RDRIESCGGSTTDFYNFLVVELCRAGRIVEADR 782 (902)
Q Consensus 750 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 782 (902)
|+++++.+|.++.+|+.|+..|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.011 Score=46.71 Aligned_cols=26 Identities=8% Similarity=-0.011 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 831 ESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 831 ~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
.++..++.++...|++++|+++++++
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444555555555555555444
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=1 Score=43.69 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=104.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCc
Q 048778 628 LCQRGRFKEAEMLLFKMFDLG--VSPNHITYSILVRAHASTGRLDHAFKIVSFMVAN-GCQLNSNVYSALLAGLVSSNKA 704 (902)
Q Consensus 628 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~~~ 704 (902)
-.+.|++++|.+.|+.+...- -+-...+...++-++.+.+++++|+..+++.++. +-.||. -|...+.++..--..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccC
Confidence 456677888888888777431 1223455566677778888888888888877764 333332 232233333322100
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIM 784 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 784 (902)
+. ..+. +....+|..-|++.++..|++.-+ .+|....
T Consensus 123 ~~----~~rD-------------------------q~~~~~A~~~f~~~i~ryPnS~Ya--------------~dA~~~i 159 (254)
T COG4105 123 DD----VTRD-------------------------QSAARAAFAAFKELVQRYPNSRYA--------------PDAKARI 159 (254)
T ss_pred Cc----cccC-------------------------HHHHHHHHHHHHHHHHHCCCCcch--------------hhHHHHH
Confidence 00 0000 014566777778888777766532 2222222
Q ss_pred HHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 785 KDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPS---FESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 785 ~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
..+... -... ..++.-|.+.|.+..|..-++.+++. +.-. .+.+..+..+|...|-.++|...-+-+
T Consensus 160 ~~~~d~----LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 160 VKLNDA----LAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHH----HHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 222110 0011 56778888888888888888888864 2222 256667777888888888887775543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.87 Score=47.57 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 588 ILVDGLFRAGNIALAMSMIEVMKLAG---CPPNVHTYTVIINGLCQ---RGRFKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
.++-+|....+++..+++++.+.... +.-....-....-++.+ .|+.++|..++..+....-.++..+|..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33445777777888888887776531 11112222234445555 7788888888877554445677777777776
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048778 662 AHAS---------TGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSN 702 (902)
Q Consensus 662 ~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 702 (902)
.|-. ....++|+..|.+.-+ +.|+...--.++..+...|
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcC
Confidence 6521 1235677777776654 3454433333333344444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.067 Score=52.16 Aligned_cols=95 Identities=12% Similarity=0.142 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHHHHc-CCCC-CHHHHHHHHHH
Q 048778 765 NFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILES-GFVP-SFESHCTVIQG 839 (902)
Q Consensus 765 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~ 839 (902)
+..+..+.+.|++.+|...|...++..+...-.. .-|+.++...|++++|...|..+.+. +-.| -++.+..++.+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 3344455666677777777777776542221111 56666677777777777777776642 1122 24667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 048778 840 LQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 840 l~~~g~~~~A~~~~~~~~~~ 859 (902)
+.+.|+.++|...|++..+.
T Consensus 225 ~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 77777777777777776554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.74 Score=44.69 Aligned_cols=166 Identities=9% Similarity=0.027 Sum_probs=112.6
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGC 804 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~ 804 (902)
.+..-+....+.|++++|.+.|+.+....|.+ ..+...++.++.+.+++++|+...++.....+...++. ...+.+
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 33444555666779999999999999887544 56778888999999999999999999988654433333 333333
Q ss_pred HH-------ccCC---hHHHHHHHHHHHHc----CCCCCH------------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 805 YC-------KERK---YDDCLEFMNLILES----GFVPSF------------ESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 805 ~~-------~~g~---~~~A~~~~~~~~~~----~~~p~~------------~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
++ ...+ ..+|..-|+.++++ .+.||. ..-..+++-|.+.|.+.-|..-++++++
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 32 1223 34445555555532 233442 1113466788999999999999999988
Q ss_pred CCCCCc--chhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 859 YNGIEE--KAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 859 ~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
.-.... ...+..+..+|.+.|-.++|.+.-+-+...
T Consensus 196 ~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 196 NYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred ccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 732211 223445678899999999998887766543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.22 Score=45.24 Aligned_cols=57 Identities=28% Similarity=0.375 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCchHhH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIM-----KSGVFPAKAI 798 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 798 (902)
++++|.+..+.++..+|.+...|..++.+|...|+..+|++.|+++. +.|+.|+..+
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 88888888888888888888888888888888888888888888774 3466666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.033 Score=54.20 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=80.6
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh---HHHHHH
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA---ITSIIG 803 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~l~~ 803 (902)
.+..+..+.+.|++.+|...|...++..|.+ +.++..|+..+...|++++|..+|..+.+.-++.... ...|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5566677778889999999999999998665 5689999999999999999999999998765433222 278889
Q ss_pred HHHccCChHHHHHHHHHHHHc
Q 048778 804 CYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~~~ 824 (902)
+....|+.++|...|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999975
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.011 Score=46.81 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCchH---hH--HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKSG--VFPAK---AI--TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~---~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
..+++.++..|...|++++|+..|+++++.. ..++. .. ..++.+|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4578888999999999999999998887431 22222 22 7888899999999999999988764
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.02 Score=44.51 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=32.6
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 803 GCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 803 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
..|.+.+++++|.+.++++++. .| ++..+...+.++.+.|++++|...++++++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 3455566666666666666553 23 335555566666666666666666666654443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.043 Score=57.70 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh----H-HHHHHHHHccCChHHHHHHHHHHHHc
Q 048778 757 GGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA----I-TSIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 757 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
+|.++..|+.++.+|.+.|++++|+..|+++++ +.|+.. . .+++.+|.+.|++++|+..++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999 556643 3 99999999999999999999999874
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.7 Score=45.02 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=55.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Q 048778 164 CYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHC 243 (902)
Q Consensus 164 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 243 (902)
+|..+...-...|+.+-|..+++. .|+. .--+..+.+.|+.+.| +.+..+.| .||. +|..|++..-
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~---~~qVplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~L~~ 67 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRA---SKQVPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLHLKR 67 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCCh---HHHHHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHHHHH
Confidence 466677777788888888887763 3443 2334556667776666 45666666 4443 3444554333
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 048778 244 RGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKD 292 (902)
Q Consensus 244 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 292 (902)
+.. . -++|.-+... |.. ..+...||+..+.+.-.++|.
T Consensus 68 ~l~-~---s~f~~il~~~----p~a---~~l~~~~~r~~~~~~L~~~y~ 105 (319)
T PF04840_consen 68 KLS-L---SQFFKILNQN----PVA---SNLYKKYCREQDRELLKDFYY 105 (319)
T ss_pred hCC-H---HHHHHHHHhC----cch---HHHHHHHHHhccHHHHHHHHH
Confidence 322 1 1333333321 332 233445666555555444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.34 Score=48.16 Aligned_cols=45 Identities=18% Similarity=-0.020 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
-+++|.+.-++.++.++.|.-+..+++..+...|+++++.+..++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555555555555555555554444555555555555555544433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.56 Score=48.91 Aligned_cols=167 Identities=13% Similarity=0.048 Sum_probs=106.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhh
Q 048778 656 YSILVRAHASTGRLDHAFKIVSFMVANGCQL---NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYER 732 (902)
Q Consensus 656 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (902)
...++-.|....+++..+++++.+....... ...+--...-++-+..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn------------------------------ 193 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRN------------------------------ 193 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcc------------------------------
Confidence 3355556888899999999999987531111 1111112222333311
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCchHhH-HHH
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCG-GSTTDFYNFLVVELCRA---------GRIVEADRIMKDIMKSGVFPAKAI-TSI 801 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~-~~l 801 (902)
+.|+.++|.+++..++... ++++.+|..++..|... ...++|+..|.+..+ +.|+... .++
T Consensus 194 ------~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~ 265 (374)
T PF13281_consen 194 ------KPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINA 265 (374)
T ss_pred ------cCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHH
Confidence 1349999999999955554 89999999999876532 257899999999988 5576655 444
Q ss_pred HHHHHccCChH----HHHHHH---HHHH-HcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 802 IGCYCKERKYD----DCLEFM---NLIL-ESGFVP---SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 802 ~~~~~~~g~~~----~A~~~~---~~~~-~~~~~p---~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
+-.+...|... +..++- ..+. ++|... +-+.+..++.+..-.|+.++|.+.+++|.+..
T Consensus 266 AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 266 ATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 44554444322 222222 1222 344322 33555677788888999999999999997664
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.24 Score=44.21 Aligned_cols=126 Identities=13% Similarity=0.097 Sum_probs=63.9
Q ss_pred hhhhccHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH----HHHHHHHHccCC
Q 048778 737 FLREMDVEHAFRLRDRIESCG--GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI----TSIIGCYCKERK 810 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~l~~~~~~~g~ 810 (902)
+.+.+..++|+..|..+.+.+ .....+....+....+.|+...|+..|.++-.....|...- ..-+..+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 344556666666666666555 11222233344455566666666666666655444443331 233444556666
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048778 811 YDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE 863 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 863 (902)
++....-.+.+...+ .| -...-..|+-.-.+.|++.+|...|+.+..-...|
T Consensus 148 y~dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 148 YDDVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 666655555554322 12 11222344445556666666666666654433333
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.081 Score=44.57 Aligned_cols=51 Identities=18% Similarity=0.098 Sum_probs=28.0
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 739 REMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
..|+.+.|++.|.+.+..-|..+.+|+.-+.++.-.|+.++|++-++++++
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.31 Score=48.93 Aligned_cols=116 Identities=8% Similarity=-0.085 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCchH-------hH-HHHHHHH
Q 048778 742 DVEHAFRLRDRIESCG--GST----TDFYNFLVVELCRAGRIVEADRIMKDIMKS--GVFPAK-------AI-TSIIGCY 805 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~-------~~-~~l~~~~ 805 (902)
.++++.+.|+.+.+.. ..| ...+..|+..|.+..++++|.-...++.+. .+..++ .. ..+.-++
T Consensus 137 ~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal 216 (518)
T KOG1941|consen 137 VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL 216 (518)
T ss_pred HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH
Confidence 6777777777766543 222 345777888888888888877666555431 111111 11 5566677
Q ss_pred HccCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 806 CKERKYDDCLEFMNLILE----SGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 806 ~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
...|....|.+.-+++.+ .|-.+. ......++++|...|+.|.|..-|++++
T Consensus 217 R~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 217 RLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 777777777777665543 333332 2455667788888888888888888764
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.52 Score=40.14 Aligned_cols=136 Identities=15% Similarity=0.195 Sum_probs=80.7
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh-H---HHHHHHHHccCChHH
Q 048778 738 LREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA-I---TSIIGCYCKERKYDD 813 (902)
Q Consensus 738 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~---~~l~~~~~~~g~~~~ 813 (902)
.-.|.+++..++..+.... .+..-++..+.-....-+-+-..++++.+=+ .-|-. . ..++.+|...|...+
T Consensus 13 ildG~V~qGveii~k~v~S--sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~se 87 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS--SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKLSE 87 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH--S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---H
T ss_pred HHhchHHHHHHHHHHHcCc--CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcchHH
Confidence 3456999999999998874 4445555555555544444444555544422 11211 1 566777766654433
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 814 CLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 814 A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
........+..+|+.++--++++.+.+ ...+++.....+..+|.+.|+..++.+++.+.=+
T Consensus 88 ------------------~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 ------------------YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp ------------------HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 333444567788888888888888765 3355666777888899999999999999998888
Q ss_pred cCcc
Q 048778 894 VHYR 897 (902)
Q Consensus 894 ~~~~ 897 (902)
+|.+
T Consensus 149 kG~k 152 (161)
T PF09205_consen 149 KGLK 152 (161)
T ss_dssp TT-H
T ss_pred hchH
Confidence 8865
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.03 E-value=2.3 Score=44.07 Aligned_cols=107 Identities=19% Similarity=0.150 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 048778 481 FTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCK 560 (902)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 560 (902)
.+.-|.-+...|+...|.++-.+.. .|+..-|-..+.+++..++|++-.++... ..+|..|-.++..|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3344555556666666666655442 35666677777777777777665554321 2345667777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048778 561 ENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIE 607 (902)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (902)
.|+..+|..+...+ + +..-+..|.+.|++.+|.+.--
T Consensus 250 ~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 250 YGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHHH
Confidence 77777776665551 1 1344566667777777665533
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.2 Score=50.31 Aligned_cols=128 Identities=11% Similarity=0.075 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh-----H-HHHHHHHHccCChHHHHHHHHHHHH--cCCCC-C----
Q 048778 763 FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA-----I-TSIIGCYCKERKYDDCLEFMNLILE--SGFVP-S---- 829 (902)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~-~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p-~---- 829 (902)
....++.++.-.+.++++++.|+.+.+-.-..++. . ..|+..|....++++|.-+..++.+ ..+.. |
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 34557777778889999999999987532222221 1 7888899999999999999988874 12221 1
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-----chhHHHHHHHHhcCCcHhHHHHHHHH
Q 048778 830 --FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE-----KAAVLPYIEFLLTGDELGKSIDLLNL 890 (902)
Q Consensus 830 --~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~l~~ 890 (902)
.....+++-+|...|++-+|.+.-+++.+...... ......+.+.|...|+.+.|..-++.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 12334566788889999999999999766543322 23345677888888988887765554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.95 E-value=2.6 Score=44.04 Aligned_cols=147 Identities=16% Similarity=0.200 Sum_probs=105.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 048778 548 PHVLNSFLDVLCKENKLKEEYAMFGKILKFG-LVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTY-TVII 625 (902)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li 625 (902)
..+|...++...+..-++.|..+|.++.+.| +.+++..+++++.-++ .|+...|.++|+--... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4556777777778888899999999998887 6678888888887554 67888888988876554 3454433 4455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 626 NGLCQRGRFKEAEMLLFKMFDLGVSPN--HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVS 700 (902)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 700 (902)
.-+...++-..|..+|+...+. +..+ ...|..+++.-..-|+...+..+-++|.. .-|...+-....+.|.-
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~i 547 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhh
Confidence 6667778888888898866543 2233 56788888888888999988888888876 34544444444444433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=2 Score=42.39 Aligned_cols=219 Identities=18% Similarity=0.167 Sum_probs=147.9
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 562 NKLKEEYAMFGKILKFGLV-PSVVTYTILVDGLFRAGNIALAMSMIEVMKLA-GCPPNVHTYTVIINGLCQRGRFKEAEM 639 (902)
Q Consensus 562 g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~ 639 (902)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444455555554442211 12456666677777888888888877777642 224455666677777777788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCcCCcccccccc
Q 048778 640 LLFKMFDLGVSPNHITYSILVR-AHASTGRLDHAFKIVSFMVANGCQL----NSNVYSALLAGLVSSNKASGVLSISTSC 714 (902)
Q Consensus 640 ~~~~m~~~g~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 714 (902)
.+.........+ ......... .+...|++++|...+.+... ..| ....+......+...+
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------ 181 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALG------------ 181 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhc------------
Confidence 888887654222 222223333 67888999999999988865 233 2222223333333444
Q ss_pred CCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048778 715 HSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGS-TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF 793 (902)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 793 (902)
+.++|...+.+.....+. ....+..+...+...++++.|...+..... ..
T Consensus 182 ---------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~ 232 (291)
T COG0457 182 ---------------------------RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LD 232 (291)
T ss_pred ---------------------------CHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hC
Confidence 899999999999998877 688899999999999999999999999988 34
Q ss_pred ch--HhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 048778 794 PA--KAITSIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 794 p~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
|+ .....+...+...+.++++...+.+..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 233 PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 54 22255555566777899999999988864
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.12 Score=44.83 Aligned_cols=100 Identities=10% Similarity=0.042 Sum_probs=66.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 048778 162 YPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLG 241 (902)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 241 (902)
..++.+++.++++.|+.+....+.++...-+ .+... ..+. .-......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~--~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGID--VNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCC--CCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 4556667777777777777766666554322 21100 0000 11233456888888888888
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhc
Q 048778 242 HCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEV 281 (902)
Q Consensus 242 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~ 281 (902)
|+..|++..|.++.+...+.++++-+..+|..|+......
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 9888899999999998888888877888888888765543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.35 Score=41.11 Aligned_cols=51 Identities=12% Similarity=0.255 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGV 792 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 792 (902)
+-+.-.+++..+.+.+.+++.....++.+|.+.|+..+|.+++.++-++|+
T Consensus 101 kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 101 KKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred cHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 778888888888776678888888899999999999999999998888774
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.62 Score=46.04 Aligned_cols=148 Identities=15% Similarity=0.086 Sum_probs=105.8
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHH
Q 048778 740 EMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~ 818 (902)
.|++.+|...|..++...|.+...-..|+.+|...|+.+.|..++..+-...-...... ..-+..+.+.....+...+-
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 34999999999999999999999999999999999999999999988743211111111 23345566666666666666
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCcchhHHHHHHHHhcCCcHh-HHHHHHHHH
Q 048778 819 NLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN--GIEEKAAVLPYIEFLLTGDELG-KSIDLLNLI 891 (902)
Q Consensus 819 ~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~-~a~~~l~~~ 891 (902)
.++.. .| |...-..++..|...|+.++|.+.+=.+++.+ .. +...-..+++.+.-.|.-+ .+.+..++|
T Consensus 227 ~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 227 RRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 66655 56 56777788999999999999999888887663 33 2334567777776655333 455555544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.72 E-value=5 Score=45.58 Aligned_cols=77 Identities=9% Similarity=0.117 Sum_probs=42.8
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCc
Q 048778 801 IIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDE 880 (902)
Q Consensus 801 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (902)
++..+.+..+.+++..+.+..-+. ++..|..+...+.+.+..+...++..+.++.=...+...-..++..+.+++.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 455566677777777776665332 5566767777777777655555555554332111111112345667777654
Q ss_pred H
Q 048778 881 L 881 (902)
Q Consensus 881 ~ 881 (902)
.
T Consensus 787 l 787 (933)
T KOG2114|consen 787 L 787 (933)
T ss_pred e
Confidence 3
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.66 E-value=3.2 Score=47.04 Aligned_cols=175 Identities=16% Similarity=0.122 Sum_probs=85.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHH----HHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHH
Q 048778 236 TSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTL----IHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIK 311 (902)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 311 (902)
..-+..+++...++.|..+.+.-. -+..+...+ .+-+.+.|++++|...|-+-... ++|. .+|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 344555566666666666554432 122222222 22344567777777666554432 2222 2344
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 048778 312 ALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIA 391 (902)
Q Consensus 312 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 391 (902)
-|....++.+-..+++.+.+.|.. +...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 455555555666666666666655 44445566677777777666555544433 2211 1112233444444455555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 392 AFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRV 434 (902)
Q Consensus 392 A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~ 434 (902)
|.-+-..... +......++ -..+++++|++.+..+
T Consensus 482 a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 4444333221 222222222 2345666666666554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.41 E-value=4.2 Score=42.60 Aligned_cols=136 Identities=19% Similarity=0.249 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 048778 619 HTYTVIINGLCQRGRFKEAEMLLFKMFDLG-VSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVY-SALLA 696 (902)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~l~~ 696 (902)
..|...++.-.+..-.+.|..+|-++.+.| +.+++..+++++..++ .|+...|..+|+--... -||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456666666666666777888888887776 5667777777777655 46777777777765542 3444333 23444
Q ss_pred HHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhc
Q 048778 697 GLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGST--TDFYNFLVVELCRA 774 (902)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 774 (902)
.+...+ +-+.|..+|+..++.-..+ ...|..++..=...
T Consensus 475 fLi~in---------------------------------------de~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~ 515 (660)
T COG5107 475 FLIRIN---------------------------------------DEENARALFETSVERLEKTQLKRIYDKMIEYESMV 515 (660)
T ss_pred HHHHhC---------------------------------------cHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhh
Confidence 455555 6666777776555443222 45666666666777
Q ss_pred CCHHHHHHHHHHHHHcCCCchHhH
Q 048778 775 GRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 775 g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
|+...|..+-+.+.+ ..|...+
T Consensus 516 G~lN~v~sLe~rf~e--~~pQen~ 537 (660)
T COG5107 516 GSLNNVYSLEERFRE--LVPQENL 537 (660)
T ss_pred cchHHHHhHHHHHHH--HcCcHhH
Confidence 788777777777776 4454443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.31 E-value=6.4 Score=44.18 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 048778 480 TFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLC 559 (902)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 559 (902)
+.+.-+.-+...|+..+|.++-.+.. -||...|-.-+.++...+++++-+++-+.+ .++..|..++..|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHH
Confidence 34444445556677777766665554 356666666677777777777655544332 23666777777788
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048778 560 KENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEV 608 (902)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (902)
+.|+.++|..++.+... .. -...+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~------l~---ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG------LQ---EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCC------hH---HHHHHHHHhccHHHHHHHHHH
Confidence 88888888777765432 11 456677777777777765433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.24 Score=43.40 Aligned_cols=63 Identities=11% Similarity=0.053 Sum_probs=45.6
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCGGS---TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGV 792 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 792 (902)
+...+....+.|++++|.+.|+.+....|. ...+-..|+.+|.+.|++++|+..+++.++..+
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 334445555666888888888888887643 345667788888888888888888888888543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.25 E-value=5.7 Score=47.04 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=37.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 048778 770 ELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRN 846 (902)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~ 846 (902)
+|...|+|.+|+.+..++.. ..+... ..|+.-+...++.-+|-++...... +|. -.+..|++.-.|
T Consensus 974 a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~-----~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS---DPE-----EAVALLCKAKEW 1042 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---CHH-----HHHHHHhhHhHH
Confidence 34444566666666655532 122222 4555556666666666666555433 121 122335555556
Q ss_pred HHHHHHHHH
Q 048778 847 KQAKNLVSD 855 (902)
Q Consensus 847 ~~A~~~~~~ 855 (902)
++|+.....
T Consensus 1043 ~eAlrva~~ 1051 (1265)
T KOG1920|consen 1043 EEALRVASK 1051 (1265)
T ss_pred HHHHHHHHh
Confidence 666655544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.19 Score=45.66 Aligned_cols=55 Identities=27% Similarity=0.437 Sum_probs=25.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 624 IINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFM 679 (902)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 679 (902)
++..+...|++++|..+.+.+.... +.|...|..++.+|...|+..+|.+.|+++
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444555555555555555433 334445555555555555555555555444
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.21 E-value=6.1 Score=43.31 Aligned_cols=124 Identities=14% Similarity=0.068 Sum_probs=61.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 442 DEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALAD 521 (902)
Q Consensus 442 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 521 (902)
+..+|...+..-.+.|+.+.+.-+|+...-. +..-...|-..+......|+.+-|..++....+-.++..+.+...-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3456666666667777777777777766431 111223344444444445666666666655544332222222211112
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhHHH
Q 048778 522 GHCKNGKTGEALMIFERMVQNTDLKTP-HVLNSFLDVLCKENKLKEEY 568 (902)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~ 568 (902)
..-..|++..|..+++.+.+.- |+. ..-..-+....+.|+.+.+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 2233556777777776666542 222 12222234444555555554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.7 Score=43.06 Aligned_cols=142 Identities=14% Similarity=0.084 Sum_probs=78.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCC
Q 048778 627 GLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASG 706 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 706 (902)
.....|++.+|..+|....... +-+...--.++.+|...|+.+.|..++..+-..--.........-+..+.+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa---- 217 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA---- 217 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh----
Confidence 3456677777777777776542 33345556677777777777777777766532111111111111222222222
Q ss_pred ccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 707 VLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
...+...+ +.-...+|.|...-..|+..|...|+.++|.+.+-.
T Consensus 218 -----------------------------------~~~~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 218 -----------------------------------ATPEIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred -----------------------------------cCCCHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22222222 223334577888888888888888888888888777
Q ss_pred HHHcCCCchH-hH-HHHHHHHHccC
Q 048778 787 IMKSGVFPAK-AI-TSIIGCYCKER 809 (902)
Q Consensus 787 ~~~~~~~p~~-~~-~~l~~~~~~~g 809 (902)
++++...-.+ .. ..++..+.-.|
T Consensus 262 ~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 262 LLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHhcccccCcHHHHHHHHHHHhcC
Confidence 7654322222 22 56666665555
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.28 Score=44.92 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=68.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 661 RAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 661 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
+-+...|++++|..-|.++++. +++...-..+++ |.+.+..+.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIl----------------------------------y~Nraaa~iKl 147 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSIL----------------------------------YSNRAAALIKL 147 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHH----------------------------------HhhhHHHHHHh
Confidence 4467789999999999888874 343332222221 11222333444
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
+.++.|++--.++++++|....++..-+.+|.+..++++|++-|+++++.
T Consensus 148 ~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 148 RKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 48999999999999998888888888888999999999999999999884
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.7 Score=51.08 Aligned_cols=152 Identities=14% Similarity=0.084 Sum_probs=105.8
Q ss_pred cHHHHHHHHHHHHhcC-CCCHHH------HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHcc
Q 048778 742 DVEHAFRLRDRIESCG-GSTTDF------YNFLVVELCR----AGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKE 808 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~-~~~~~~------~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~ 808 (902)
|-+.+.+.+.+..+.+ -..+.+ |...+..++. ....+.|.++++.+.+ ..|+... ..-++.+...
T Consensus 203 dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 203 DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLK 280 (468)
T ss_pred cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHh
Confidence 8889999998887754 222222 2222222222 4478899999999998 4577666 6777888999
Q ss_pred CChHHHHHHHHHHHHc-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHH-HHHHhcCCcH---
Q 048778 809 RKYDDCLEFMNLILES-GFVP--SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPY-IEFLLTGDEL--- 881 (902)
Q Consensus 809 g~~~~A~~~~~~~~~~-~~~p--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~--- 881 (902)
|+.++|++.++++... .--| ....+..+++++.-.++|++|.+.+.++.+.... +...|..+ +.++...|+.
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhh
Confidence 9999999999987631 1112 2355667888999999999999999999775433 33344333 3445567888
Q ss_pred ----hHHHHHHHHHHhcCc
Q 048778 882 ----GKSIDLLNLIDQVHY 896 (902)
Q Consensus 882 ----~~a~~~l~~~~~~~~ 896 (902)
++|.++++++....-
T Consensus 360 ~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 360 KEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred hhhHHHHHHHHHHHHHHHh
Confidence 889999888766544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.94 Score=41.77 Aligned_cols=115 Identities=12% Similarity=0.126 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCCCCHH-H--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-----HHHHHHHHccCChHHHHH
Q 048778 745 HAFRLRDRIESCGGSTTD-F--YNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-----TSIIGCYCKERKYDDCLE 816 (902)
Q Consensus 745 ~A~~~~~~~~~~~~~~~~-~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-----~~l~~~~~~~g~~~~A~~ 816 (902)
+.....+++...++.+.. . -..++..+...|++++|+..++..+.. ..|... ..|+......|.+++|+.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~ 147 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALK 147 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 444445555554433321 1 234456788889999999999988753 223222 678888999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048778 817 FMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE 863 (902)
Q Consensus 817 ~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 863 (902)
.++...+.++.+ .....-+++|...|+.++|+.-|++++....+|
T Consensus 148 ~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 148 TLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 998887654333 233456788999999999999999998886443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.35 Score=40.91 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=75.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHc-CCCCC--HHHHHHHHHHHH
Q 048778 767 LVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILES-GFVPS--FESHCTVIQGLQ 841 (902)
Q Consensus 767 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~--~~~~~~l~~~l~ 841 (902)
-+-++.+.|+.+.|++.|.+.+. +-|.... ++-+.++.-+|+.++|++=++++++. |-.-. ...|..-+..|.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 34578899999999999999998 5566555 88999999999999999999999863 32211 245555666788
Q ss_pred hcCCHHHHHHHHHHHHhCCCC
Q 048778 842 SEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 842 ~~g~~~~A~~~~~~~~~~~~~ 862 (902)
..|+.+.|..-|+.+.+.|-+
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCH
Confidence 899999999999999888744
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.45 Score=45.13 Aligned_cols=121 Identities=7% Similarity=0.070 Sum_probs=95.5
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCC
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERK 810 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~ 810 (902)
-++.+.....+..|+..|.+++..+|..+..|..-+.++.+..+++.+.+--.++++ +.|+.+. ..++.+......
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcc
Confidence 345556666999999999999999999999999999999999999999999999988 7898888 888889999999
Q ss_pred hHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 811 YDDCLEFMNLIL----ESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 811 ~~~A~~~~~~~~----~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
+++|+..+.++. +..+.|.......|..+-.+.=...++..+.++
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 999999999884 344555556666665554444444555554444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.65 Score=40.82 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHHHHc
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
+..+..-+....+.|++++|++.|+.+...-+...-.. ..++.+|.+.|++++|...+++.++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34455566667778888888888888877543332222 67778888888888888888888764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.081 Score=36.06 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=29.9
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVV 769 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 769 (902)
+..+...|++++|.+.|+++++.+|.|+..|..|+.
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 334444449999999999999999999999988864
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.93 E-value=2.2 Score=38.49 Aligned_cols=145 Identities=10% Similarity=0.018 Sum_probs=103.7
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHH
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDD 813 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~ 813 (902)
.+|..+....+-..|..+++ +.+.++.++|+.-|..+.+.|...-++. ...+....+.|+..+
T Consensus 48 ~yw~~s~as~sgd~flaAL~---------------lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~ 112 (221)
T COG4649 48 TYWQTSRASKSGDAFLAALK---------------LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAA 112 (221)
T ss_pred ehhcccccccchHHHHHHHH---------------HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHH
Confidence 34544455555455544443 4677889999999999998887655555 677778899999999
Q ss_pred HHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHH
Q 048778 814 CLEFMNLILESGFVPSF---ESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNL 890 (902)
Q Consensus 814 A~~~~~~~~~~~~~p~~---~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~ 890 (902)
|...|.++-...-.|.. ..-..-+..+...|-+++...-++-+..-+.+--...-..|+-+-++.|++..|.+.|+.
T Consensus 113 AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~q 192 (221)
T COG4649 113 AVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQ 192 (221)
T ss_pred HHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHH
Confidence 99999999865444533 122334467889999999999888753333222233445677778899999999999999
Q ss_pred HHhcC
Q 048778 891 IDQVH 895 (902)
Q Consensus 891 ~~~~~ 895 (902)
+....
T Consensus 193 ia~Da 197 (221)
T COG4649 193 IANDA 197 (221)
T ss_pred HHccc
Confidence 87753
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.81 E-value=5.5 Score=40.73 Aligned_cols=123 Identities=13% Similarity=-0.008 Sum_probs=70.0
Q ss_pred HhcCChhHHHHHHHHHHHCC--CCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCcC-----
Q 048778 173 AKLDLGFVAYAVFVKLIADG--FVLSAI------DYRSVINALCKSGLVRAGEMFFCRVLKH--------GFCLD----- 231 (902)
Q Consensus 173 ~~~g~~~~a~~~~~~~~~~g--~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g~~~~----- 231 (902)
.+.|+++.|..++.+....- ..|+.. .|+.-...+.+..+++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46778888888888876542 223221 3444444443333777777777665443 11222
Q ss_pred HHHHHHHHHHHhccCCH---HHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048778 232 THICTSLVLGHCRGNDL---KEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEK 297 (902)
Q Consensus 232 ~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 297 (902)
..++..++.+|...+.. ++|..+.+.+...++.+ ...+-.-+..+.+.++.+++.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23555666777666644 34666666666543322 334444455555577777777777777765
|
It is also involved in sporulation []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.64 E-value=8.5 Score=42.23 Aligned_cols=185 Identities=13% Similarity=0.048 Sum_probs=111.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 048778 476 PDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFL 555 (902)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 555 (902)
++..+|..-+..-.+.|+.+.+.-+|+...-- +..-...|-..+.-....|+.+-|..++....+-..+..+. ...+-
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~-i~L~~ 372 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI-IHLLE 372 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH-HHHHH
Confidence 45568888888888999999999988877642 12233455555555556688888887777665543333332 22222
Q ss_pred HHH-HhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHH---
Q 048778 556 DVL-CKENKLKEEYAMFGKILKFGLVPSV-VTYTILVDGLFRAGNIALAM---SMIEVMKLAGCPPNVHTYTVIING--- 627 (902)
Q Consensus 556 ~~~-~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~li~~--- 627 (902)
..+ -..|+.+.|..+++.+.+.- |+. ..-..-+....+.|+.+.+. .++.........+. +...+.--
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~--i~~~l~~~~~r 448 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG--ILEKLYVKFAR 448 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc--hhHHHHHHHHH
Confidence 333 34578999999999888753 443 22233345556777777777 33333332211121 22222211
Q ss_pred --HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048778 628 --LCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTG 667 (902)
Q Consensus 628 --~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 667 (902)
+.-.++.+.|..++.++.+. ++++...|..+++.....+
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 22356788888888888876 4677777777777665544
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.25 Score=44.89 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=70.8
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccC
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG----------RIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKER 809 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g 809 (902)
-++.|++.++.....+|.|...++..+.++.+.. .+++|+.-|++++. +.|+... ..++.+|...+
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 5788999999999999999999888888776553 34566666777777 5676544 77777765444
Q ss_pred -----------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 810 -----------KYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 810 -----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
.+++|...|+++.+. +|+.+.|..-.... ++|=++..++.+.+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 266677777777663 79988887665444 34555555554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.49 E-value=11 Score=42.87 Aligned_cols=248 Identities=12% Similarity=0.041 Sum_probs=117.5
Q ss_pred HcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 595 RAGNIALAMSMIEVMKL-------AGCPPNVHTYTVIINGLCQRG-----RFKEAEMLLFKMFDLGVSPNHITYSILVRA 662 (902)
Q Consensus 595 ~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 662 (902)
...+.+.|+..|+.+.+ .| +......+..+|.+.. +.+.|..++.+..+.| .|+...+-..+.-
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 33455555555555544 43 2223444555555532 4566777777777666 4444333222221
Q ss_pred HHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhc
Q 048778 663 HAS-TGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREM 741 (902)
Q Consensus 663 ~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (902)
... ..+...|.++|....+.|..+. .. .+.. |...|. .+.+
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A-~~--~la~-~y~~G~------------------gv~r---------------- 378 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILA-IY--RLAL-CYELGL------------------GVER---------------- 378 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHH-HH--HHHH-HHHhCC------------------CcCC----------------
Confidence 111 2346677777777776653321 11 1111 112220 0000
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHH---Hc----cCChHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCY---CK----ERKYDD 813 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~---~~----~g~~~~ 813 (902)
+.+.|..++.++.+++.+...........+.. ++++.+...+..+.+.|..-.... ..+.... .. ..+.+.
T Consensus 379 ~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred CHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhH
Confidence 77777777777777662222222222223333 666666666666655443222222 1111111 11 224566
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHh----cCCcHhHHH
Q 048778 814 CLEFMNLILESGFVPSFESHCTVIQGLQSE----GRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLL----TGDELGKSI 885 (902)
Q Consensus 814 A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~ 885 (902)
+...+.+....| +......+++.|..- .+.+.|...|.++...+ ......++..+- -.. +..|.
T Consensus 458 ~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~ 529 (552)
T KOG1550|consen 458 AFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAK 529 (552)
T ss_pred HHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHH
Confidence 666666665543 233444555555332 23677777777765555 222223332221 123 56666
Q ss_pred HHHHHHHh
Q 048778 886 DLLNLIDQ 893 (902)
Q Consensus 886 ~~l~~~~~ 893 (902)
+.++....
T Consensus 530 ~~~~~~~~ 537 (552)
T KOG1550|consen 530 RYYDQASE 537 (552)
T ss_pred HHHHHHHh
Confidence 66666544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.73 Score=42.97 Aligned_cols=85 Identities=11% Similarity=0.026 Sum_probs=57.6
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDC 814 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A 814 (902)
+-..|-..-|+--|...+...|.-+.++|.|+-.+...|+++.|.+.|+...+ +.|...+ .+-+-++.--|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 33445677777778888888888888888888888888888888888888887 4454333 2223334445666666
Q ss_pred HHHHHHHHH
Q 048778 815 LEFMNLILE 823 (902)
Q Consensus 815 ~~~~~~~~~ 823 (902)
.+-+.+.-+
T Consensus 153 q~d~~~fYQ 161 (297)
T COG4785 153 QDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHh
Confidence 665554443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.20 E-value=3.3 Score=44.21 Aligned_cols=53 Identities=6% Similarity=-0.003 Sum_probs=42.9
Q ss_pred hhhhccHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGS--TTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
.++.|+.+||++.++++.+..|. +......|+.++...+.+.++..++.+.-+
T Consensus 269 arklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 269 ARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34444999999999999887644 456788899999999999999999988754
|
The molecular function of this protein is uncertain. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.74 Score=40.05 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
|..++..++.++++.|+++....+.+..-. +.++.. ...+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345666667777777777666666654432 221110 00000 0112346678888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC
Q 048778 662 AHASTGRLDHAFKIVSFMVAN-GCQLNSNVYSALLAGLVSSN 702 (902)
Q Consensus 662 ~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~ 702 (902)
+|+..|++..|+++++...+. +++.+..+|..|+.-.....
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 888888888888888887764 66667888888887655444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.13 E-value=13 Score=42.30 Aligned_cols=77 Identities=14% Similarity=0.022 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHcCCCchHhHHHHHHHHHcc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHH
Q 048778 776 RIVEADRIMKDIMKSGVFPAKAITSIIGCYCKE----RKYDDCLEFMNLILESGFVPSFESHCTVIQGLQ----SEGRNK 847 (902)
Q Consensus 776 ~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~----~~g~~~ 847 (902)
+.+.+...+.+....| .......+.+.|... .+.+.|...+..+...+ ......++..+. ... +.
T Consensus 454 ~~~~~~~~~~~a~~~g--~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG--NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LH 526 (552)
T ss_pred chhHHHHHHHHHHhcc--CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hH
Confidence 4555566666665433 222225556555443 24677777777776543 333333444332 233 57
Q ss_pred HHHHHHHHHHhC
Q 048778 848 QAKNLVSDLFRY 859 (902)
Q Consensus 848 ~A~~~~~~~~~~ 859 (902)
.|.++++++.+.
T Consensus 527 ~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 527 LAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhc
Confidence 777777776443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.56 Score=43.12 Aligned_cols=94 Identities=23% Similarity=0.178 Sum_probs=71.2
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccC
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTT-----DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKER 809 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g 809 (902)
..+++.|++++|..-|..+++.-|+.+ ..|..-+.++.+.+.++.|+.-..++++.++.-..+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 446667799999999999998875543 455566678888999999999999998854332333356677899999
Q ss_pred ChHHHHHHHHHHHHcCCCCCH
Q 048778 810 KYDDCLEFMNLILESGFVPSF 830 (902)
Q Consensus 810 ~~~~A~~~~~~~~~~~~~p~~ 830 (902)
.+++|+.=++++++. .|..
T Consensus 183 k~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 183 KYEEALEDYKKILES--DPSR 201 (271)
T ss_pred hHHHHHHHHHHHHHh--Ccch
Confidence 999999999999874 5654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.1 Score=48.86 Aligned_cols=156 Identities=13% Similarity=0.121 Sum_probs=95.5
Q ss_pred HHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCC
Q 048778 628 LCQRGRFKEAEMLLFKMF-DLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASG 706 (902)
Q Consensus 628 ~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 706 (902)
..-.++++++.++.+.-. -..+ +....+.++..+.+.|..+.|+++...-.. -.+...+.|
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg---- 332 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLG---- 332 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT----
T ss_pred HHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcC----
Confidence 344567777666554111 1111 244567777778888888888877544321 123344555
Q ss_pred ccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 707 VLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
+++.|.++.++ .+++..|..|+......|+++-|++.|++
T Consensus 333 -----------------------------------~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 333 -----------------------------------NLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp ------------------------------------HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred -----------------------------------CHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88888765443 34777899999999999999999999988
Q ss_pred HHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 787 IMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 787 ~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
..+ ...|+..|.-.|+.+.-.++.+.+...| -++....++.-.|+.++..+++.+
T Consensus 373 ~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 373 AKD--------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp CT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred hcC--------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 633 1467778888899888888887777665 233333444566888888888777
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.32 Score=48.39 Aligned_cols=97 Identities=7% Similarity=0.011 Sum_probs=71.9
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCCh
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKY 811 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~ 811 (902)
..+..|+++|.+++|+..|.+.+...|.|++.+..-+.+|.+.+++..|+.-...++..+-.--..+..-+.+-...|+.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 34577889999999999999999999999999999999999999999998888877652100001113334444556677
Q ss_pred HHHHHHHHHHHHcCCCCCH
Q 048778 812 DDCLEFMNLILESGFVPSF 830 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~~ 830 (902)
.+|.+=.+..++ ++|..
T Consensus 182 ~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPKN 198 (536)
T ss_pred HHHHHhHHHHHh--hCccc
Confidence 777777777766 36653
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.99 E-value=6.1 Score=37.97 Aligned_cols=85 Identities=15% Similarity=0.047 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 551 LNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ 630 (902)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 630 (902)
|..-..+|-...++++|...+.+..+ +...+... +-..+.++.|.-+.++|... +.-...|+-....|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrsl-------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSL-------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccH-------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 33334556666677777666666553 11111111 11233345555555555442 2223345555666666
Q ss_pred cCCHHHHHHHHHHHH
Q 048778 631 RGRFKEAEMLLFKMF 645 (902)
Q Consensus 631 ~g~~~~A~~~~~~m~ 645 (902)
.|..+.|...+++.-
T Consensus 104 ~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAA 118 (308)
T ss_pred hCCcchHHHHHHHHH
Confidence 776666666665543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.98 E-value=5.3 Score=40.88 Aligned_cols=151 Identities=13% Similarity=0.176 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHH
Q 048778 669 LDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFR 748 (902)
Q Consensus 669 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 748 (902)
+++.+.+++.|.+.|+.-+..++-+......... ...+.. ....|..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~------------------------~~~~~~---------~~~ra~~ 124 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEE------------------------KEDYDE---------IIQRAKE 124 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcc------------------------cccHHH---------HHHHHHH
Confidence 3456678888888888887766654333332211 001111 7788999
Q ss_pred HHHHHHhcC-----CCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccC--ChHHH
Q 048778 749 LRDRIESCG-----GSTTDFYNFLVVELCRAGR----IVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKER--KYDDC 814 (902)
Q Consensus 749 ~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g--~~~~A 814 (902)
+|+.|.+.. +.|......|+. ..++ .+.++.+|+.+.+.|....+.. ..++....... ...++
T Consensus 125 iy~~mKk~H~fLTs~~D~~~a~lLA~---~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~ 201 (297)
T PF13170_consen 125 IYKEMKKKHPFLTSPEDYPFAALLAM---TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARV 201 (297)
T ss_pred HHHHHHHhCccccCccchhHHHHHhc---ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHH
Confidence 999999986 333333333332 2222 4677888999988888887766 33333222211 25678
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 815 LEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
.++++.+.+.|+++...+|..++-.-.-.+..++....+.+
T Consensus 202 ~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~e 242 (297)
T PF13170_consen 202 IELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIKE 242 (297)
T ss_pred HHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHHH
Confidence 89999999999888887787776544444444344433333
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.81 E-value=3 Score=37.40 Aligned_cols=124 Identities=10% Similarity=0.029 Sum_probs=85.1
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCC
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERK 810 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~ 810 (902)
..+..+...+..+.....++.+...++.++..++.++..|++.+ .++.++.++. .++... ..++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 33444444558999999999999988888889999999999774 3444455442 122222 667888888899
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhc
Q 048778 811 YDDCLEFMNLILESGFVPSFESHCTVIQGLQSE-GRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLT 877 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 877 (902)
++++.-++.++-. +...+..+... ++.+.|++++++. .+...|..++..+..
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 9999999888632 12223333333 8899999988871 245577777766654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.63 E-value=1.3 Score=48.11 Aligned_cols=130 Identities=18% Similarity=0.168 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 270 TFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLC 349 (902)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 349 (902)
-.+.+++-+-+.|..+.|+++-.+-.. -.+...+.|+++.|.++.++. .+...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 456666666667777777665433211 123344566666666554332 25556666666666
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 350 REGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVH 429 (902)
Q Consensus 350 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~ 429 (902)
+.|+++-|++.|.+... |..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 66666666666665543 44455555556666555555555554431 3333344444455555544
Q ss_pred HHH
Q 048778 430 LLK 432 (902)
Q Consensus 430 ~~~ 432 (902)
++.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.14 Score=34.93 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH
Q 048778 762 DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 762 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
.+|..++..|...|++++|+++|+++++ ..|++..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHH
Confidence 3566777777777777777777777777 3455543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.49 Score=45.93 Aligned_cols=72 Identities=14% Similarity=0.263 Sum_probs=41.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 562 NKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAG----------------NIALAMSMIEVMKLAGCPPNVHTYTVII 625 (902)
Q Consensus 562 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~~~~p~~~~~~~li 625 (902)
+.++-....++.|.+.|+..|..+|+.|++.+-+.. +-+-+++++++|...|+.||..+-..|+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 444545555666666777777777777666543321 2234555666666666666666666666
Q ss_pred HHHHhcCC
Q 048778 626 NGLCQRGR 633 (902)
Q Consensus 626 ~~~~~~g~ 633 (902)
+++.+.+-
T Consensus 166 n~FGr~~~ 173 (406)
T KOG3941|consen 166 NAFGRWNF 173 (406)
T ss_pred HHhccccc
Confidence 66555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.55 Score=45.59 Aligned_cols=116 Identities=14% Similarity=0.156 Sum_probs=71.6
Q ss_pred CCCHhhHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 048778 265 RPNSVTFTTLIHGLCE-----VGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAH 339 (902)
Q Consensus 265 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 339 (902)
..|-.+|-+++..+.. .+.++--...++.|.+-|+.-|..+|+.||+.+-+-. +.|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-H
Confidence 3566667666666643 3456666667788888888888888888877654321 1221 1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHH
Q 048778 340 TYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRI-IAAFELLALM 399 (902)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m 399 (902)
++....-.|-+ +-+=+.+++++|...|+.||-.+-..|+++|.+.+.. .+..+++-.|
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 22222222222 2334678888888888888888888888888877653 2333444444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.33 E-value=5.2 Score=35.81 Aligned_cols=125 Identities=15% Similarity=0.131 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 552 NSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQR 631 (902)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 631 (902)
..++..+...+.......+++.+...+. .+...++.++..|++.+ ..+.++.++. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455555555566666666666655542 45556666666666543 2333333332 11222233456666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 632 GRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAST-GRLDHAFKIVSFMVANGCQLNSNVYSALLAGLV 699 (902)
Q Consensus 632 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 699 (902)
+.++++.-++.++.. +...+..+... ++++.|.+++.+ ..+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 666666666665521 11222223333 667777766654 124556666665554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.13 E-value=1.4 Score=41.18 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHHHH---cCCCCCHHHHH
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILE---SGFVPSFESHC 834 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~ 834 (902)
...+..++..|++.|+.++|++.|.++.+....+.... ..++......|++..+..++.++.. .+-+++...-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 45688999999999999999999999999877777766 7788888999999999999988874 22223322222
Q ss_pred HHH--HHHHhcCCHHHHHHHHHHH
Q 048778 835 TVI--QGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 835 ~l~--~~l~~~g~~~~A~~~~~~~ 856 (902)
... -.+...|++.+|-+.|-..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 222 2334678999999888775
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.84 E-value=9.5 Score=36.73 Aligned_cols=138 Identities=11% Similarity=0.005 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048778 516 ITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFR 595 (902)
Q Consensus 516 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 595 (902)
|.....+|....++++|...+.+..+- ...+... +-....++.|.-+.+++.+. +--+..|+-....|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrsl-------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSL-------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccH-------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 333345566666777776666555431 1111111 11223455555555555542 1123345566677888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHhcCCHH
Q 048778 596 AGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDL---G--VSPNHITYSILVRAHASTGRLD 670 (902)
Q Consensus 596 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~p~~~~~~~l~~~~~~~g~~~ 670 (902)
+|.++.|-..+++.-+. .+..++++|++++++.... + ...-...+....+.+.+..+++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 88877777666655431 2233455566655554321 1 0111234445556667777777
Q ss_pred HHHHHHHHH
Q 048778 671 HAFKIVSFM 679 (902)
Q Consensus 671 ~A~~~~~~m 679 (902)
+|-..+.+-
T Consensus 168 Eaa~a~lKe 176 (308)
T KOG1585|consen 168 EAATAFLKE 176 (308)
T ss_pred HHHHHHHHh
Confidence 776655543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.1 Score=33.66 Aligned_cols=26 Identities=8% Similarity=0.047 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 833 HCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 833 ~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
|..++.+|.+.|++++|++++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677777777777777777777543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.72 E-value=1.2 Score=42.13 Aligned_cols=136 Identities=11% Similarity=0.051 Sum_probs=79.6
Q ss_pred cchhhhhhhhhhhhccHHHHHHHHHHHHhcC-----CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh--H
Q 048778 727 DDDYERSSKNFLREMDVEHAFRLRDRIESCG-----GSTTD-FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA--I 798 (902)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~ 798 (902)
.+.|...+..+-.+.++..|=..|-++-+.. ..|.. +|.-...+ .+.++.++|...++..++ +-.+.. +
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c-ykk~~~~eAv~cL~~aie--Iyt~~Grf~ 110 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC-YKKVDPEEAVNCLEKAIE--IYTDMGRFT 110 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-hhccChHHHHHHHHHHHH--HHHhhhHHH
Confidence 4555555555555557777766666654443 22233 33333333 444578888777777665 222211 1
Q ss_pred ------HHHHHHHHcc-CChHHHHHHHHHHHHc--CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcc
Q 048778 799 ------TSIIGCYCKE-RKYDDCLEFMNLILES--GFVP---SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEK 865 (902)
Q Consensus 799 ------~~l~~~~~~~-g~~~~A~~~~~~~~~~--~~~p---~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 865 (902)
..++..|... .++++|+..++++-+. |-+. ....+..++..-...|.+.+|+.+|++........+.
T Consensus 111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 3556666654 6888888888887742 2111 2245555555556778899999999997666554443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.26 Score=31.12 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch
Q 048778 762 DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA 795 (902)
Q Consensus 762 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 795 (902)
.+|..++..|...|++++|+..|+++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4577778888888888888888888777 4454
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.56 E-value=3.3 Score=38.36 Aligned_cols=115 Identities=5% Similarity=-0.046 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH
Q 048778 779 EADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCLEFMNLILESGFVPSF--ESHCTVIQGLQSEGRNKQAKNLV 853 (902)
Q Consensus 779 ~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~l~~~g~~~~A~~~~ 853 (902)
+.....+++...+....-.. ..++..+...|++++|...++..+...-+.+. ..-..+++++...|.+|+|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444555554332222222 56677899999999999999988753111111 33345778899999999999999
Q ss_pred HHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 854 SDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 854 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
+.....++. ...-..-++.+...|+.++|..-+++..+.+
T Consensus 150 ~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 875333332 2234556789999999999999999988875
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.29 Score=31.53 Aligned_cols=27 Identities=15% Similarity=0.005 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 763 FYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
+|..|+..|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.24 Score=31.24 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 762 DFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 762 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
..|..++..+...|++++|++.|+++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566777777777777777777777776
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.28 E-value=24 Score=39.97 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048778 619 HTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGL 698 (902)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 698 (902)
.+.+--+..+...|+..+|.++-.+.. -||...|..-+.++...++|++-+++-+.+.. +.-|.-+...|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHH
Confidence 344555666777788888887766654 57888888888888888888887777666532 23444466777
Q ss_pred HhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 048778 699 VSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIV 778 (902)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 778 (902)
.+.| +.+||.+.+.+.... . -...+|.+.|++.
T Consensus 755 ~~~~---------------------------------------n~~EA~KYiprv~~l----~----ekv~ay~~~~~~~ 787 (829)
T KOG2280|consen 755 LKQG---------------------------------------NKDEAKKYIPRVGGL----Q----EKVKAYLRVGDVK 787 (829)
T ss_pred Hhcc---------------------------------------cHHHHhhhhhccCCh----H----HHHHHHHHhccHH
Confidence 7777 777777777665431 1 4566777778877
Q ss_pred HHHHHHHH
Q 048778 779 EADRIMKD 786 (902)
Q Consensus 779 ~A~~~~~~ 786 (902)
+|.++.-+
T Consensus 788 eAad~A~~ 795 (829)
T KOG2280|consen 788 EAADLAAE 795 (829)
T ss_pred HHHHHHHH
Confidence 77766443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.18 E-value=18 Score=38.46 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 616 PNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSP---NHITYSILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 616 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
....+|..++..+.+.|+++.|...+..+...+... +......-+..+...|+..+|+..++..++
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344578888999999999999999999888643111 344445556777888999999998888876
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.51 E-value=3.3 Score=38.78 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=68.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHH----
Q 048778 799 TSIIGCYCKERKYDDCLEFMNLILESGFVPS--FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYI---- 872 (902)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~---- 872 (902)
..++..|++.|+.++|.+.+.++.+....+. ...+..++++....|++..+..++.++.......+......-+
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~ 119 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYE 119 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 6889999999999999999999998655554 3677788888999999999999999986554333322222212
Q ss_pred -HHHhcCCcHhHHHHHHHHH
Q 048778 873 -EFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 873 -~~~~~~g~~~~a~~~l~~~ 891 (902)
-.++..|++.+|-+.|-..
T Consensus 120 gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 120 GLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHhchHHHHHHHHHcc
Confidence 2245678998887776543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.50 E-value=5.3 Score=36.03 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
+.+++..++..+.-+.|..+..-..-+..+...|+|.+|+.+++.+.+.. |.... ..++.|+...|+. .=..+.+
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~-~Wr~~A~ 101 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDP-SWRRYAD 101 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCCh-HHHHHHH
Confidence 88888888888888888888888888888899999999999999987644 44444 4444455455543 2233444
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 820 LILESGFVPSFESHCTVIQGLQSEGRNKQAKN 851 (902)
Q Consensus 820 ~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~ 851 (902)
++.+.+ +|+.+.. ++..+........|..
T Consensus 102 evle~~--~d~~a~~-Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 102 EVLESG--ADPDARA-LVRALLARADLEPAHE 130 (160)
T ss_pred HHHhcC--CChHHHH-HHHHHHHhccccchhh
Confidence 555543 3333332 3344444444444443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.94 E-value=2.3 Score=40.51 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=88.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCC
Q 048778 769 VELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF-ESHCTVIQGLQSEGR 845 (902)
Q Consensus 769 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g~ 845 (902)
+.|....++..|+..|.+++. +.|..+. ..-+.++.+..+++.+..--.++++ +.|+. .....++.++.....
T Consensus 18 nk~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcc
Confidence 345566789999999999988 6677755 7778888899999998888888877 47765 555667788888899
Q ss_pred HHHHHHHHHHHHh----CCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHH
Q 048778 846 NKQAKNLVSDLFR----YNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 846 ~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 891 (902)
+++|+..++++.+ .++.+....+..|..+-.+.-...+...+.+++
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 9999999999843 356677778877777765555555555544443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.84 E-value=22 Score=36.71 Aligned_cols=153 Identities=14% Similarity=0.096 Sum_probs=79.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcC
Q 048778 630 QRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAS----TGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKAS 705 (902)
Q Consensus 630 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~ 705 (902)
..+++..|...+......+ +......+...|.. ..+..+|.+++..+.+.|..+ ....|...|......
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv- 125 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGV- 125 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCc-
Confidence 4566777777777776643 22333344444432 245667777777666544322 222233333222100
Q ss_pred CccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhc----C---CH
Q 048778 706 GVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGST-TDFYNFLVVELCRA----G---RI 777 (902)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~----g---~~ 777 (902)
..+..+|...|+++.+.+-++ ..+...++..|..- + +.
T Consensus 126 ----------------------------------~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 126 ----------------------------------PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred ----------------------------------ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 006777777777777766333 33355555555443 1 22
Q ss_pred HHHHHHHHHHHHcCCCchHhHHHHHHHHHc----cCChHHHHHHHHHHHHcC
Q 048778 778 VEADRIMKDIMKSGVFPAKAITSIIGCYCK----ERKYDDCLEFMNLILESG 825 (902)
Q Consensus 778 ~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 825 (902)
..|...|.++-..+ .......++..|.. ..+..+|...+++..+.|
T Consensus 172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 172 KKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 35666676666644 11111444444432 236667777777776655
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.59 E-value=7.2 Score=35.19 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=71.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 048778 766 FLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPS-FESHCTVIQGLQS 842 (902)
Q Consensus 766 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~ 842 (902)
.+++.-.+.++.+++..+++-+.- +.|.... ..-++.+...|++.+|..+++.+.+.. |. +..-..++.+|..
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 344455677899999999999988 6677666 666778899999999999999987642 32 3333455566666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHH
Q 048778 843 EGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKS 884 (902)
Q Consensus 843 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 884 (902)
.|+. +-..+-+++++.+..|+.. .++..+........|
T Consensus 91 ~~D~-~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 91 LGDP-SWRRYADEVLESGADPDAR---ALVRALLARADLEPA 128 (160)
T ss_pred cCCh-HHHHHHHHHHhcCCChHHH---HHHHHHHHhccccch
Confidence 6663 2223333444445444443 455555554444433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.53 E-value=46 Score=40.00 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHh
Q 048778 371 PGVVTYNVLINGYCKQG--RIIAAFELLALMEK 401 (902)
Q Consensus 371 ~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 401 (902)
|+ .-...+|..|.+.+ .+++|++...+...
T Consensus 789 ~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 789 PD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred cc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 44 44456778888877 67777777777664
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.83 Score=45.60 Aligned_cols=102 Identities=10% Similarity=-0.063 Sum_probs=67.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 048778 625 INGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKA 704 (902)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 704 (902)
.+.|.++|.+++|+..|...+... +.|.+++..-..+|.+...+..|..-...++.. -...+.+|.+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~-- 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRM-- 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHH--
Confidence 566888888888888888777642 337888888888888888887777666655431 122334444444
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFL 767 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 767 (902)
..-...|...+|.+-++..+++.|.+...-..+
T Consensus 173 ------------------------------~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 173 ------------------------------QARESLGNNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred ------------------------------HHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 222234588888888888888887766544433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.95 E-value=7.9 Score=34.30 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCC
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERK 810 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~ 810 (902)
+.+++..+++.+.-+.|.....-..-++.+...|+|.+|+.++..+.+.+....-....++.|+...|+
T Consensus 25 d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 25 DPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred CHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 788888888888877777777777777788888888888888888876542221111444444444444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.65 E-value=0.86 Score=28.60 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 832 SHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 832 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
.+..++.++...|++++|++.++++++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45566666777777777777777665543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.59 E-value=16 Score=33.41 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=44.4
Q ss_pred HHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 048778 290 LKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGH 369 (902)
Q Consensus 290 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 369 (902)
.++.+.+.++.|+...|..+|+.+.+.|++....++ ...++-+|.......+-.+. +....+.++--.|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 334444455556666666666666666554433332 22333334333332221111 2223333333333332
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 048778 370 FPGVVTYNVLINGYCKQGRIIAAFELLALM 399 (902)
Q Consensus 370 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 399 (902)
=...+..++..+...|++-+|+++.+..
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0112444555566666666666665553
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.40 E-value=4 Score=40.88 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 048778 620 TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVA-----NGCQLNSNVYSAL 694 (902)
Q Consensus 620 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~l 694 (902)
++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34455555556666666666666666553 45566666666666666666666666665554 3666666666555
Q ss_pred HHH
Q 048778 695 LAG 697 (902)
Q Consensus 695 ~~~ 697 (902)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 555
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.30 E-value=3.8 Score=40.99 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHh
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK-----SGVFPAKA 797 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~ 797 (902)
+.+.+.+.++++++.+|-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...
T Consensus 168 ~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 168 RADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 999999999999999999999999999999999999999999998865 34555444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.91 Score=28.57 Aligned_cols=29 Identities=7% Similarity=0.041 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 832 SHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 832 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
+|..++.++...|++++|+..++++++..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 45666666777777777777777765543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.24 E-value=4.1 Score=40.66 Aligned_cols=144 Identities=16% Similarity=0.128 Sum_probs=80.2
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHH
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDD 813 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~ 813 (902)
-+..|+..+..+-++.-..+++.+|.-..+|..|+. .+..-..+|+.+++++++.+ +.+..-...+.+.|...+
T Consensus 191 MQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAE--EEa~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~~~d 264 (556)
T KOG3807|consen 191 MQKAWRERNPPARIKAAYQALEINNECATAYVLLAE--EEATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSPQHE 264 (556)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhh--hhhhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhccchh
Confidence 345677777777788888888888777777776654 33445788888998887643 111111122222222222
Q ss_pred HHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcchhHHHHHHHHhcCCcHhHHHHHHHH
Q 048778 814 CLEFMNLILESGFVPSFESH--CTVIQGLQSEGRNKQAKNLVSDLFRYN-GIEEKAAVLPYIEFLLTGDELGKSIDLLNL 890 (902)
Q Consensus 814 A~~~~~~~~~~~~~p~~~~~--~~l~~~l~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~ 890 (902)
| +.++ +-+.-+| ..++-+-.+.|+..||.+.++.+.+.- +..--.+...|+.+++...-|.++..++-+
T Consensus 265 a------~~rR--Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 265 A------QLRR--DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred h------hhhc--ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 1221 2233333 234445556777777777777754332 111123445666666666556665555544
Q ss_pred H
Q 048778 891 I 891 (902)
Q Consensus 891 ~ 891 (902)
-
T Consensus 337 Y 337 (556)
T KOG3807|consen 337 Y 337 (556)
T ss_pred h
Confidence 3
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.20 E-value=3.8 Score=37.52 Aligned_cols=77 Identities=12% Similarity=0.048 Sum_probs=53.1
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccC
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGR-----------IVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKER 809 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g 809 (902)
-+++|+.-|++++..+|....++..++.+|...+. +++|.+.|+++.+ ..|++.. ..-+...
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~---- 123 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA---- 123 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH----
Confidence 67889999999999999999999999999887753 5666777777776 5677665 3333333
Q ss_pred ChHHHHHHHHHHHHcCC
Q 048778 810 KYDDCLEFMNLILESGF 826 (902)
Q Consensus 810 ~~~~A~~~~~~~~~~~~ 826 (902)
.+|-++..++.+.+.
T Consensus 124 --~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 --AKAPELHMEIHKQGL 138 (186)
T ss_dssp --HTHHHHHHHHHHSSS
T ss_pred --HhhHHHHHHHHHHHh
Confidence 456777777766543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.82 E-value=3.3 Score=43.53 Aligned_cols=132 Identities=10% Similarity=0.007 Sum_probs=96.8
Q ss_pred cchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHH
Q 048778 727 DDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCY 805 (902)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~ 805 (902)
.+.....+...|..|++-.|.+-+...+...|.++.............|+++.+...+..+... +.....+ ..+++..
T Consensus 289 ~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 289 IREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSL 367 (831)
T ss_pred hhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhh
Confidence 4455567778899999999998888888888888887777788899999999999988766442 3333344 7788888
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 806 CKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 806 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
.+.|++++|....+.|+...++. ++.....+-.--..|-++++.-.+++.....
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hchhhHHHHHHHHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 89999999999999998654432 2222111112224577899999999986554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.64 E-value=30 Score=35.23 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=8.3
Q ss_pred CCHhhHHHHHHHHHhcCC
Q 048778 266 PNSVTFTTLIHGLCEVGR 283 (902)
Q Consensus 266 ~~~~~~~~li~~~~~~g~ 283 (902)
+|...-...+.++++-|.
T Consensus 66 ~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 66 KNPIERDIGADILSQLGM 83 (280)
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444444554444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.56 E-value=32 Score=35.35 Aligned_cols=128 Identities=16% Similarity=0.158 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC---
Q 048778 566 EEYAMFGKILKFGLVPSVVTYTILVDGLFR--A----GNIALAMSMIEVMKLAGC---PPNVHTYTVIINGLCQRGR--- 633 (902)
Q Consensus 566 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~--- 633 (902)
+...+++.|.+.|+..+..+|-+..-.... . .....|..+|+.|++... .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344556666666666665554442222221 1 124567777777776421 2344445554433 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 634 -FKEAEMLLFKMFDLGVSPNH--ITYSILVRAHASTGR--LDHAFKIVSFMVANGCQLNSNVYSALL 695 (902)
Q Consensus 634 -~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~l~ 695 (902)
.+++..+|+.+.+.|+..+- ...+.++........ ..++.++++.+.+.|+++....|..+.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 34556666667666655542 223333332222211 346677777777777777666655443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.73 E-value=12 Score=41.05 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=73.6
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHH
Q 048778 738 LREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEF 817 (902)
Q Consensus 738 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~ 817 (902)
.+.|+++.|.++..+. .+..-|..|+++....|++..|.+.|.++.+. ..|+-.+...|+-+.-..+
T Consensus 648 l~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~--------~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL--------GSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch--------hhhhhhhhhcCChhHHHHH
Confidence 3455888888776655 46788999999999999999999999988652 3466667777887766666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 818 MNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 818 ~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
-....+.| ..+ ...-+|...|+++++.+++.+
T Consensus 715 a~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 715 ASLAKKQG-KNN-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHHh
Confidence 66666655 222 223356789999999999887
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.68 E-value=28 Score=36.39 Aligned_cols=145 Identities=10% Similarity=-0.025 Sum_probs=95.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHH
Q 048778 749 LRDRIESCGGSTTDFYNFLVVELCRAG------------RIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDC 814 (902)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A 814 (902)
-+++.++.+|.|..+|..++..--..- ..+.-+.+++++++++ |+... ..++..+.+..+.++.
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n--p~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN--PDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHH
Confidence 456667777999999999887544332 2466778999999874 44444 7778888888899999
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhC------CC----CCcchhHHHHH-------H
Q 048778 815 LEFMNLILESGFVP-SFESHCTVIQGLQ---SEGRNKQAKNLVSDLFRY------NG----IEEKAAVLPYI-------E 873 (902)
Q Consensus 815 ~~~~~~~~~~~~~p-~~~~~~~l~~~l~---~~g~~~~A~~~~~~~~~~------~~----~~~~~~~~~l~-------~ 873 (902)
.+.+++++.. .| +...|...+.... ..-.+++....|.++++. +. .+.......++ .
T Consensus 85 ~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~ 162 (321)
T PF08424_consen 85 AKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCR 162 (321)
T ss_pred HHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHH
Confidence 9999999975 34 4455554444332 233577777777776532 11 00011111222 2
Q ss_pred HHhcCCcHhHHHHHHHHHHhcCcc
Q 048778 874 FLLTGDELGKSIDLLNLIDQVHYR 897 (902)
Q Consensus 874 ~~~~~g~~~~a~~~l~~~~~~~~~ 897 (902)
.+..+|..+.|+.+++.+.+-.+.
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHHHcC
Confidence 345699999999999999887763
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.53 E-value=23 Score=32.52 Aligned_cols=132 Identities=13% Similarity=0.168 Sum_probs=69.0
Q ss_pred HHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 048778 254 VFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKR 333 (902)
Q Consensus 254 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 333 (902)
+...+.+. +++|+...|..+|+.+.+.|++.. +..+...++-+|.......+-.+. +....+.++=-.|.++
T Consensus 16 YirSl~~~-~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 16 YIRSLNQH-NIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 33344443 666777777777777777776543 334445556666555544442222 2233344444444432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048778 334 CKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALME 400 (902)
Q Consensus 334 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (902)
=...+..++..+...|++-+|.++....... +......++.+-.+.++..--..+++-..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1114456667777788888888777665321 22233445555555555444444444333
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.17 E-value=5.9 Score=39.49 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=67.8
Q ss_pred CCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHh-----hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048778 226 HGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSV-----TFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQ 300 (902)
Q Consensus 226 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 300 (902)
.|...++.+...++..--...+++.+...+-++... |+.. +-.+.++ ++-.-++++++.++..=++.|+.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs----~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHS----PNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcC----cchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccc
Confidence 344555555566666666667788888877777653 3221 1112222 33344677888888888888888
Q ss_pred cCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048778 301 PSTRTYTVLIKALCDISLTDKALSLFDEMVVK 332 (902)
Q Consensus 301 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 332 (902)
||.++++.+|+.+.+.+++.+|.++.-.|...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888888888888777766654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.89 E-value=1 Score=28.35 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 763 FYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
+|..++..|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777777777777777777766
|
... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.44 E-value=0.52 Score=29.83 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=20.5
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 048778 818 MNLILESGFVP-SFESHCTVIQGLQSEGRNKQAK 850 (902)
Q Consensus 818 ~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~ 850 (902)
++++++. .| +..+|..++.+|...|++++|+
T Consensus 2 y~kAie~--~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3445543 45 3477777777777778777775
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=86.15 E-value=12 Score=36.17 Aligned_cols=94 Identities=16% Similarity=0.066 Sum_probs=59.2
Q ss_pred HHhcCCHHHHHHHHHHHHH----cCCCchHhH---HHHHHHHHccCCh-------HHHHHHHHHHHHcCCCC-----CHH
Q 048778 771 LCRAGRIVEADRIMKDIMK----SGVFPAKAI---TSIIGCYCKERKY-------DDCLEFMNLILESGFVP-----SFE 831 (902)
Q Consensus 771 ~~~~g~~~~A~~~~~~~~~----~~~~p~~~~---~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~p-----~~~ 831 (902)
+.....+++|++.|..++- .+..|.... ..++|.|...|+. ..|.+.|++..+..-.| +..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 3444567777777766642 122333222 7889999988884 44555555555332222 124
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 048778 832 SHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE 864 (902)
Q Consensus 832 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~ 864 (902)
....++....+.|+.++|...+.+++..+-...
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 445677788889999999999999887765544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.96 E-value=51 Score=35.00 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=28.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048778 555 LDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKL 611 (902)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (902)
..+.-+.|+++...+....... ..++...|.++... +.++++++....+.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~--~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNE--DSPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccC--CChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 3455566777764444433332 12344455544433 66777777777666654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.85 E-value=70 Score=36.42 Aligned_cols=85 Identities=13% Similarity=0.054 Sum_probs=39.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048778 594 FRAGNIALAMSMIEVMKLAGCPPNVHTY----TVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRL 669 (902)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 669 (902)
...|+..+|.+++.--+-..-.+ ...| ..+.-++..+|......+++.+.++..-.+....=.+|.-++...|.-
T Consensus 368 IH~G~~~~~~~ll~pYLP~~~~~-~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa 446 (929)
T KOG2062|consen 368 IHRGHENQAMKLLAPYLPKEAGE-GSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA 446 (929)
T ss_pred eeccccchHHHHhhhhCCccCCC-CCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhcccc
Confidence 45677777777776554331011 1111 122334445555555777766666443223333333444444444433
Q ss_pred HHHHHHHHHHHH
Q 048778 670 DHAFKIVSFMVA 681 (902)
Q Consensus 670 ~~A~~~~~~m~~ 681 (902)
. .++|+..++
T Consensus 447 ~--~eiYe~lKe 456 (929)
T KOG2062|consen 447 N--EEIYEKLKE 456 (929)
T ss_pred c--HHHHHHHHH
Confidence 2 344444443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.73 E-value=77 Score=36.80 Aligned_cols=152 Identities=11% Similarity=-0.004 Sum_probs=79.3
Q ss_pred ccHHHHHHHHH--------HHHhcCCCCHHHHHHH---HHHHHhcCC--HHH--HHHHHHHHHHcC-CCc--hHhH--HH
Q 048778 741 MDVEHAFRLRD--------RIESCGGSTTDFYNFL---VVELCRAGR--IVE--ADRIMKDIMKSG-VFP--AKAI--TS 800 (902)
Q Consensus 741 ~~~~~A~~~~~--------~~~~~~~~~~~~~~~l---~~~~~~~g~--~~~--A~~~~~~~~~~~-~~p--~~~~--~~ 800 (902)
|+.+.|...|. .....++.+.....+. +..+...+. ..+ +.++++.+...- -.| +..+ ..
T Consensus 418 g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~ 497 (608)
T PF10345_consen 418 GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCL 497 (608)
T ss_pred CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHH
Confidence 39999999998 4444444333322222 223333332 223 666666654311 112 2222 33
Q ss_pred HHHHHHccC--ChHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---cchhHH
Q 048778 801 IIGCYCKER--KYDDCLEFMNLILES---GFVPS---FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE---EKAAVL 869 (902)
Q Consensus 801 l~~~~~~~g--~~~~A~~~~~~~~~~---~~~p~---~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~ 869 (902)
+.+++...- ...++...+.+..+. ..... ...++.+...+. .|+..|.......+....... ....|.
T Consensus 498 ~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~ 576 (608)
T PF10345_consen 498 VLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWH 576 (608)
T ss_pred HHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 344443222 334666666554421 11111 134455555555 788888777777765443333 455675
Q ss_pred HHHHH-----HhcCCcHhHHHHHHHHHHh
Q 048778 870 PYIEF-----LLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 870 ~l~~~-----~~~~g~~~~a~~~l~~~~~ 893 (902)
.+..+ +-..|+.++|....++...
T Consensus 577 ~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 577 LVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 55544 4558999999998887653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=85.71 E-value=7.4 Score=31.49 Aligned_cols=64 Identities=13% Similarity=0.023 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-hH-HHHHHHHHccCC
Q 048778 747 FRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK-AI-TSIIGCYCKERK 810 (902)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~-~~l~~~~~~~g~ 810 (902)
...++..++.+|.|......++..+...|++++|++.+-.+++.....+. .. ..++..+...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34556667778999999999999999999999999999999876544422 22 666666665555
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.43 E-value=45 Score=33.84 Aligned_cols=100 Identities=16% Similarity=0.072 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH
Q 048778 760 TTDFYNFLVVELCRAGRIVEADRIMKDIMK----SGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESH 833 (902)
Q Consensus 760 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 833 (902)
-..++...+..||+.|+.+.|++.+.+..+ .|.+-|... ..++-.|....-+.+-++-.+.+.+.|-+.+-..-
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 356777888899999999999887766544 355555555 66777777777788888888888887777664222
Q ss_pred HHHHHH-HH-hcCCHHHHHHHHHHHHhC
Q 048778 834 CTVIQG-LQ-SEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 834 ~~l~~~-l~-~~g~~~~A~~~~~~~~~~ 859 (902)
...-.+ |+ .-.++.+|-.+|-..+..
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 222111 22 345688888888776533
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.65 E-value=30 Score=37.07 Aligned_cols=134 Identities=12% Similarity=0.020 Sum_probs=74.7
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcC--CCchHhH----HHHHHHHHccCChH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIM---KSG--VFPAKAI----TSIIGCYCKERKYD 812 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~p~~~~----~~l~~~~~~~g~~~ 812 (902)
+...+.+-.+.......+.+.....-...++.+|++.+|.+++...- +.| +.|.-.. +.|+-.+.+.|.+.
T Consensus 221 ~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~ 300 (696)
T KOG2471|consen 221 NLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQ 300 (696)
T ss_pred HHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHH
Confidence 44444444444333333444444455566677777777777654431 111 1121111 45555566666777
Q ss_pred HHHHHHHHHHH-------cCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHH
Q 048778 813 DCLEFMNLILE-------SGFVPS----------FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFL 875 (902)
Q Consensus 813 ~A~~~~~~~~~-------~~~~p~----------~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (902)
-+..+|.++++ .|+.|. .+.....+-.|...|+.-.|.+-|.++... +..++..|..+..+|
T Consensus 301 ~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 301 ASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECC 379 (696)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHH
Confidence 77766666653 344442 122333455666788888888888876544 345667788877777
Q ss_pred h
Q 048778 876 L 876 (902)
Q Consensus 876 ~ 876 (902)
.
T Consensus 380 i 380 (696)
T KOG2471|consen 380 I 380 (696)
T ss_pred H
Confidence 4
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=84.43 E-value=86 Score=36.29 Aligned_cols=87 Identities=8% Similarity=0.147 Sum_probs=34.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhc--
Q 048778 590 VDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLG-VSPNHITYSILVRAHAST-- 666 (902)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~-- 666 (902)
...+.-.|+++.|++.+-+ ..+...|.+.+.+.+.-| |-.......-..+.... -.|...-+..||..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445567778888777766 112244444444433322 22111111112232111 011124566677777653
Q ss_pred -CCHHHHHHHHHHHHH
Q 048778 667 -GRLDHAFKIVSFMVA 681 (902)
Q Consensus 667 -g~~~~A~~~~~~m~~ 681 (902)
.+..+|.+++--+..
T Consensus 340 ~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 340 ITDPREALQYLYLICL 355 (613)
T ss_dssp TT-HHHHHHHHHGGGG
T ss_pred ccCHHHHHHHHHHHHH
Confidence 566677777666543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.32 E-value=1.2 Score=44.79 Aligned_cols=113 Identities=8% Similarity=-0.004 Sum_probs=81.8
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHH
Q 048778 739 REMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLE 816 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~ 816 (902)
..|.+++|++.|...++++|+....|..-+..+.+.++...|+.-+..+.+ +.||..- -.-..+..-.|++++|.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Confidence 355899999999999999999999999999999999999999999988887 5566554 333445556789999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 817 FMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 817 ~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
.+....+.++.+....+.. .+.-..+..++-...+++
T Consensus 204 dl~~a~kld~dE~~~a~lK--eV~p~a~ki~e~~~k~er 240 (377)
T KOG1308|consen 204 DLALACKLDYDEANSATLK--EVFPNAGKIEEHRRKYER 240 (377)
T ss_pred HHHHHHhccccHHHHHHHH--HhccchhhhhhchhHHHH
Confidence 9999988777776544322 223333444444444444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.00 E-value=31 Score=30.75 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=51.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048778 772 CRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGR 845 (902)
Q Consensus 772 ~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~ 845 (902)
...++.+++..+++.+.- +.|+... ..-++.+...|++.+|..+++++.+.+.. .+..-..++.++...|+
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~-~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA-PPYGKALLALCLNAKGD 93 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC-chHHHHHHHHHHHhcCC
Confidence 347899999999999987 6676665 66677889999999999999999875322 12233344555555555
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.86 E-value=2.5 Score=27.93 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 762 DFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 762 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
.+++.|+..|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777777654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.53 E-value=11 Score=37.80 Aligned_cols=105 Identities=13% Similarity=0.280 Sum_probs=68.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048778 507 KGISPDEATITALADGHCKNGKTGEALMIFERMVQNT---DLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSV 583 (902)
Q Consensus 507 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 583 (902)
.|.+....+...++..-.....++.+...+-++.... ..++. +....+.. +-.-+.++++.++..=+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irl-llky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHH-HHccChHHHHHHHhCcchhccccch
Confidence 3445555666666666666677777777777665531 11111 11222333 3334566788888777788888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 048778 584 VTYTILVDGLFRAGNIALAMSMIEVMKLAG 613 (902)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 613 (902)
.+++.+|+.+.+.+++.+|.++...|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888888888877776543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.52 E-value=55 Score=33.36 Aligned_cols=218 Identities=15% Similarity=0.087 Sum_probs=98.2
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCCHHHH
Q 048778 266 PNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLT----DKALSLFDEMVVKRCKPNAHTY 341 (902)
Q Consensus 266 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~~~~~ 341 (902)
+|.......+..+...|. +++...+..+... +|...-...+.+++..|+. +++...+..+... .++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 566666666666666653 3344444444332 3555555556666666652 3455666555333 3444555
Q ss_pred HHHHHHHHHcCCH-----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048778 342 TVLIDRLCREGKI-----DEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELME 416 (902)
Q Consensus 342 ~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 416 (902)
...+.++...+.- ..+...+...... ++..+-...+.++.+.++ .++...+-.+.+. +|...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5555555443321 1223333333322 244444455555555554 3444444444442 23333333333
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 048778 417 GLCRMN-KSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPE 495 (902)
Q Consensus 417 ~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 495 (902)
++.+.+ ....+...+..+.. .++..+-...+.++.+.|+. .|...+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 443332 12334444444443 23444444555555555553 3333333333322 1 122344455555553
Q ss_pred HHHHHHHHHHH
Q 048778 496 LANGFFGLMVK 506 (902)
Q Consensus 496 ~A~~~~~~~~~ 506 (902)
+|...+..+.+
T Consensus 252 ~a~p~L~~l~~ 262 (280)
T PRK09687 252 TLLPVLDTLLY 262 (280)
T ss_pred hHHHHHHHHHh
Confidence 34555555444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.07 E-value=95 Score=35.70 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=15.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhc
Q 048778 843 EGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLT 877 (902)
Q Consensus 843 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 877 (902)
.++.++|+++.++ ..|...|..|+.-.+.
T Consensus 674 l~die~AIefvKe------q~D~eLWe~LI~~~ld 702 (846)
T KOG2066|consen 674 LRDIEKAIEFVKE------QDDSELWEDLINYSLD 702 (846)
T ss_pred hhCHHHHHHHHHh------cCCHHHHHHHHHHhhc
Confidence 3555555555554 3345556666554443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.07 E-value=50 Score=31.85 Aligned_cols=86 Identities=12% Similarity=0.046 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHHHhcCC---CCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-----HHHHHHHHcc--
Q 048778 742 DVEHAFRLRDRIESCGG---STT---DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-----TSIIGCYCKE-- 808 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~---~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-----~~l~~~~~~~-- 808 (902)
+++.|+..|+.+-+... .+. ..+...+..-...|++.+|+.+|+++....+..+..- .-+-.++|+.
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~ 208 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK 208 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence 67777777777665541 111 2234445555677889999999998876443222111 2222233332
Q ss_pred CChHHHHHHHHHHHHcCCCCC
Q 048778 809 RKYDDCLEFMNLILESGFVPS 829 (902)
Q Consensus 809 g~~~~A~~~~~~~~~~~~~p~ 829 (902)
.+.-.+...+++-.+ ..|.
T Consensus 209 ~D~v~a~~ALeky~~--~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQE--LDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHh--cCCc
Confidence 444455555555554 3564
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.83 E-value=59 Score=32.50 Aligned_cols=73 Identities=11% Similarity=0.068 Sum_probs=44.0
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHH
Q 048778 738 LREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCL 815 (902)
Q Consensus 738 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~ 815 (902)
|..+.-+.+..++.+.+ ...+..|.+.|.+.+|.++.+..+. +.|-... ..++..+...|+--.|.
T Consensus 266 Waedererle~ly~kll----------gkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~ 333 (361)
T COG3947 266 WAEDERERLEQLYMKLL----------GKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAI 333 (361)
T ss_pred cccchHHHHHHHHHHHH----------HHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhh
Confidence 33334455555555443 3456667777777777777777766 3343222 56666777777766666
Q ss_pred HHHHHHH
Q 048778 816 EFMNLIL 822 (902)
Q Consensus 816 ~~~~~~~ 822 (902)
+-++++.
T Consensus 334 khyerya 340 (361)
T COG3947 334 KHYERYA 340 (361)
T ss_pred hHHHHHH
Confidence 6666554
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=81.56 E-value=1.1e+02 Score=35.44 Aligned_cols=88 Identities=14% Similarity=0.131 Sum_probs=39.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHh---
Q 048778 380 INGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGG-LFPDEITYNILVDGFCR--- 455 (902)
Q Consensus 380 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~--- 455 (902)
...+.-.|+++.|.+.+-. ..+...|.+.+...+..+.-.+-..... ..+.... -.|...-+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455668889999888876 2222345555554444332222111111 2222211 01122567778888876
Q ss_pred cCCHHHHHHHHHHHHhC
Q 048778 456 EGQLDIALKIFNSMSIF 472 (902)
Q Consensus 456 ~g~~~~A~~~~~~m~~~ 472 (902)
..+..+|.+++--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 46778888888777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.42 E-value=3.7 Score=25.64 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 832 SHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 832 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
+|..++.+|...|++++|++.++++++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56677788888888888888888876543
|
... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.10 E-value=2.3 Score=26.29 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 764 YNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 764 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
+..++.++.+.|++++|.+.|+++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44566666666667777766666665
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.04 E-value=3.3 Score=27.35 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 831 ESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 831 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
.+++.++..|...|++++|..++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667788888888888888888888754
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.84 E-value=9.2 Score=30.86 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 048778 216 GEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSK 260 (902)
Q Consensus 216 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 260 (902)
+++-+..+...++.|++.+..+-++++-|.+++..|.++|+.++.
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555555555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=80.61 E-value=2.2 Score=26.39 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=23.9
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcCCCC
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCGGST 760 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 760 (902)
+...+..+.+.|+.++|.+.|+++++..|.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3445556666779999999999999987753
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=80.01 E-value=96 Score=33.74 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=55.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 547 TPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIIN 626 (902)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (902)
|....-+++..+..+-...-...+..+|+..| -+-..|..++.+|... ..++-..+|+++.+..+ .|++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33444556666666666666666666776643 3556666677777666 45666677777766532 23333333444
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 048778 627 GLCQRGRFKEAEMLLFKMFDL 647 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~ 647 (902)
-|.+ ++.+.+..+|.++...
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH
Confidence 3333 6666677777666543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 88.7 bits (218), Expect = 5e-18
Identities = 23/195 (11%), Positives = 64/195 (32%), Gaps = 4/195 (2%)
Query: 300 QPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANG 359
P L++ D + + + ++ A+
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 360 M---CGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELME 416
+ Q + YN ++ G+ +QG +L +++ P++ +Y ++
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 417 GLCRMNKSYKAV-HLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLV 475
+ R ++ + L+++ GL + +L+ R L K+ + S+ +
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 476 PDGFTFTSIIDGLCK 490
P + ++ +
Sbjct: 269 PPPVNTSKLLRDVYA 283
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 83.7 bits (205), Expect = 1e-16
Identities = 18/177 (10%), Positives = 48/177 (27%), Gaps = 4/177 (2%)
Query: 258 MSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSL---KDEMCEKGWQPSTRTYTVLIKALC 314
+A +L A L +K + Y ++
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 315 DISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEA-NGMCGKMLQDGHFPGV 373
+ + + + P+ +Y + + R+ + +M Q+G
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 374 VTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHL 430
+ VL++ + + A ++ P ++L+ + + L
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKL 293
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.7 bits (179), Expect = 2e-13
Identities = 20/226 (8%), Positives = 57/226 (25%), Gaps = 4/226 (1%)
Query: 350 REGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIR 409
R A + Q P L+ + + + +
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 410 TYNELMEGLC---RMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIF 466
+ ++ ++ + + YN ++ G+ R+G + +
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 467 NSMSIFGLVPDGFTFTSIIDGLCKLGK-PELANGFFGLMVKKGISPDEATITALADGHCK 525
+ GL PD ++ + + + + + M ++G+ L +
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 526 NGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMF 571
+ L P + L + ++ +
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.7 bits (179), Expect = 2e-13
Identities = 29/210 (13%), Positives = 66/210 (31%), Gaps = 4/210 (1%)
Query: 490 KLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPH 549
+L ++A + SP E + L + Q
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 550 VLNSFLDVLCKENKLKEEYAM---FGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMI 606
L +F ++L + + + + ++ Y ++ G R G + ++
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 607 EVMKLAGCPPNVHTYTVIINGLCQRGRFKEA-EMLLFKMFDLGVSPNHITYSILVRAHAS 665
++K AG P++ +Y + + ++ + E L +M G+ + ++L+
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 666 TGRLDHAFKIVSFMVANGCQLNSNVYSALL 695
L K+ S LL
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKLL 278
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 70.6 bits (171), Expect = 2e-12
Identities = 26/231 (11%), Positives = 60/231 (25%), Gaps = 4/231 (1%)
Query: 391 AAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILV 450
A L + P L++ + L +
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 451 DGFCREGQLDIA---LKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKK 507
QL +A L + + + + +++ G + G + ++
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 508 GISPDEATITALADGHCKNGKTGEAL-MIFERMVQNTDLKTPHVLNSFLDVLCKENKLKE 566
G++PD + A + + + E+M Q L + LK
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 567 EYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPN 617
+ + +P V + L+ ++ + +K C
Sbjct: 255 VHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.8 bits (104), Expect = 1e-04
Identities = 17/155 (10%), Positives = 45/155 (29%), Gaps = 10/155 (6%)
Query: 709 SISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLV 768
+ S E + + +DVE A + G F
Sbjct: 78 CLEDCTRQAPESPWEEQLARLLQEAPGKL--SLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 769 VELCRAGRIVEADRIMKD----IMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILES 824
++ A ++ K + +++ + ++ + + + + ++ ++
Sbjct: 136 C-CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 825 GFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859
G P S+ +Q + GR Q +
Sbjct: 195 GLTPDLLSYAAALQCM---GRQDQDAGTIERCLEQ 226
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 1e-07
Identities = 54/322 (16%), Positives = 94/322 (29%), Gaps = 99/322 (30%)
Query: 9 TKHGLRPHGLHSLYNLVSVSLLSSYNLKSPETINDTACQVS--------ALLHKP----- 55
T H H +L SLL Y P+ + + +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 56 NWQQ------NDILKSLVSHMPP-----------------HAASQVI-LLHGENTELGVR 91
NW+ I++S ++ + P H + ++ L+ + + V
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 92 FF-----------KWVCKQSTYCYDVNSRIHLLNLVVSCNLYGVA--HKAIIE--LIKEC 136
K K+ST I + L + L H++I++ I +
Sbjct: 406 VVVNKLHKYSLVEKQP-KESTI------SIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 137 SDSKDDILKLIVALDGLSKDGFKLNYPCY---------SCLLMSLAKLDLGFVAYAVFVK 187
DS DD++ + D + ++ + L + LD F+ K
Sbjct: 459 FDS-DDLIPPYL-------DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE----QK 506
Query: 188 LIADGFVLSA--------ID---YRSVI--NALCKSGLVRAGEMFFCRVLKHGFCLDTHI 234
+ D +A Y+ I N LV A F + K L
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF---LPKIEENLICSK 563
Query: 235 CTSLV---LGHCRGNDLKEAFK 253
T L+ L +EA K
Sbjct: 564 YTDLLRIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 8e-07
Identities = 104/644 (16%), Positives = 184/644 (28%), Gaps = 218/644 (33%)
Query: 82 HGENTELGVRFFKWVCKQSTYCY-DVNSRIHLLNLVVS---CN-----LYGVAHKAIIEL 132
H + E G + Y Y D+ S + V C + K I+
Sbjct: 5 HHMDFETG---------EHQYQYKDILS--VFEDAFVDNFDCKDVQDMPKSILSKEEIDH 53
Query: 133 IKECSDSKDDILKLIVALDGLSK----------DGFKLNYPCYSCLLMS-LAKLDLG--- 178
I D+ L+L L LSK + ++NY LMS +
Sbjct: 54 IIMSKDAVSGTLRLFWTL--LSKQEEMVQKFVEEVLRINYK----FLMSPIKTEQRQPSM 107
Query: 179 ----FVAY--------AVFVKLIADGFVLSAIDYRSVINALCK----SGLVRAGEMFFCR 222
++ VF K V Y + AL + ++ G +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKY----NVSRLQPYLKLRQALLELRPAKNVLIDG-VLGSG 162
Query: 223 VLKHGFCLDTHICTSLVLGHCRGNDLKEA--FKVF-----------DVMSKEAS-YRPNS 268
K T + L C ++ FK+F V+
Sbjct: 163 --K----------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 269 VTFTTLIHGLCEVG-RLDEAFS-LKDEMCEKGWQPSTRTYTVL--------IKAL---C- 314
+T+ + R+ + L+ + K P VL A C
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 315 ------DISLTD----------------------KALSLFDEMV----------VKRCKP 336
+TD + SL + + V P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 337 NAHTYTVLIDRLCREG-------------KIDEANGMCGKMLQDGH----------FP-G 372
+ +I R+G K+ +L+ FP
Sbjct: 328 RRLS---IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 373 V-VTYNVL------INGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSY 425
+ +L + ++ +L+EK+ + I + +E ++ Y
Sbjct: 385 AHIPTILLSLIWFDVIKSDVM-VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 426 KAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSII 485
A+H + +VD YNI F + + L D + ++ I
Sbjct: 444 -ALH--RSIVD--------HYNIP-KTFDSDDLIPPYL-------------DQYFYSHIG 478
Query: 486 DGLCKLGKPELANGF------FGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERM 539
L + PE F F + +K I D + A G N T + L ++
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQK-IRHD--STAWNASGSILN--TLQQLKFYKPY 533
Query: 540 VQNTDLKTPHVLNSFLDVL--CKENKLKEEYAMFGKILKFGLVP 581
+ + D K ++N+ LD L +EN + +Y +L+ L+
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYT---DLLRIALMA 574
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 3e-06
Identities = 81/635 (12%), Positives = 167/635 (26%), Gaps = 243/635 (38%)
Query: 394 ELLALMEKRTCK-----PNI--RTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITY 446
+++ K + T L L + ++++ V+ L + Y
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTL-RLFWTLLSKQEE-----MVQKFVEEVLRIN---Y 91
Query: 447 NILVDGF---CREGQLDIAL------KIFNSMSIF--GLVPDGFTFTSIIDGLCKL---- 491
L+ R+ + + +++N +F V + + L +L
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 492 ----------GKPELA--------------NGFFGLMVKKGISPDEATI----------- 516
GK +A F L +K SP+
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 517 --TALADG------HCKNGKTGEALMIFERMVQNT-----DLKTPHVLNSFLDVLCKENK 563
T+ +D + + ++ + +N +++ N+F ++ CK
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCK--- 267
Query: 564 LKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTV 623
IL + T R + +S T +
Sbjct: 268 ----------IL-------LTT---------RFKQVTDFLS------------AATTTHI 289
Query: 624 IINGLCQRGRFKEAEML-LF------KMFDL-----GVSPNHITYSI---LVRAHAST-G 667
++ E+ L + DL +P + SI +R +T
Sbjct: 290 SLDHH--SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--SIIAESIRDGLATWD 345
Query: 668 RLDHAF-----KIVSFMVANGCQLNSNVYSALLAGLV----SSNKASGVLSISTSCHSDA 718
H I+ + L Y + L S++ + +LS+
Sbjct: 346 NWKHVNCDKLTTIIESSLNV---LEPAEYRKMFDRLSVFPPSAHIPTILLSL-------- 394
Query: 719 GSSRLEHDDDDYERSSKNFLREMDVEHAFRL--RDRIESCGGSTTDFYNFLVVELCRAGR 776
+ D + + ++ H + L + ES T + + +
Sbjct: 395 ----IWFDVIKSD--VMVVVNKL---HKYSLVEKQPKES----TISIPSIYLELKVKLEN 441
Query: 777 IVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYD--DCL------------------- 815
R SI+ Y + +D D +
Sbjct: 442 EYALHR-----------------SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 816 -------EFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAK----NLVSDLFRY----- 859
F + L+ F+ Q ++ + A N + L Y
Sbjct: 485 EHPERMTLFRMVFLDFRFLE---------QKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 860 -NGIEEKAAVLPYIEFLLTGDE---LGKSIDLLNL 890
N + + V ++FL +E K DLL +
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 8e-06
Identities = 56/366 (15%), Positives = 127/366 (34%), Gaps = 84/366 (22%)
Query: 588 ILVDGLFRAGNIALAMSMIEVMKLAGCPPN-VHTYTVIINGLCQRGR--FKEAEMLLFKM 644
+L+DG+ +G +A+ + K+ + + C + + LL+++
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL---KNCNSPETVLEMLQKLLYQI 209
Query: 645 FDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL------NSNVYSALLAG- 697
S + + +I +R H+ L K + C L N+ ++A
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCLLVLLNVQNAKAWNAFNLSC 266
Query: 698 --LVSSNKAS--GVLSISTSCHSDAGSSRLEHDDDDY-ERSSKNFL------------RE 740
L+++ LS +T+ H L+H K+ L RE
Sbjct: 267 KILLTTRFKQVTDFLSAATTTH-----ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 741 MDVEH-------AFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEA--DRIMKDIMKS- 790
+ + A +RD + +T D + + + + I+E+ + + +
Sbjct: 322 VLTTNPRRLSIIAESIRDGL-----ATWDNWKHVNCD--KLTTIIESSLNVLEPAEYRKM 374
Query: 791 ----GVFPAKA-ITS-IIGCYCKERKYDDCLEFMN------LILESGFVPSFESHCTVIQ 838
VFP A I + ++ + D + +N L+ + + ++
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYL 433
Query: 839 GLQSEGRNKQA--KNLVSDLFRYNGIE--EKAAVLP-----YI-EFL---LTGDELGKSI 885
L+ + N+ A +++V YN + + ++P Y + L E + +
Sbjct: 434 ELKVKLENEYALHRSIVD---HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 886 DLLNLI 891
L ++
Sbjct: 491 TLFRMV 496
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 1e-05
Identities = 59/379 (15%), Positives = 118/379 (31%), Gaps = 111/379 (29%)
Query: 537 ERMVQNTDLKTPHVLNSFL-DVLCK--ENKLK-----EEYAMFGKILKFGLVPSVVTYT- 587
E Q D+ ++F+ + CK ++ K EE I+ V+ T
Sbjct: 13 EHQYQYKDI-LSVFEDAFVDNFDCKDVQDMPKSILSKEEID---HIIM---SKDAVSGTL 65
Query: 588 ILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLF----- 642
L L + + EV++ N Y +++ + R ++
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLR-----IN---YKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 643 KMFDLG--VSPNHIT----YSILVRAHASTGRLDHAFKIVSF-MVANGCQLNSNVYSALL 695
++++ + +++ Y L R L A ++ ++ G L
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKL-RQALL--ELRPAKNVLIDGVL--GSGKTWVALDVCL 172
Query: 696 AGLVSSNKASGV--LSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRI 753
+ V + L++ +C+S + LE + N+ D H+ ++ RI
Sbjct: 173 SYKVQCKMDFKIFWLNLK-NCNSP--ETVLEMLQKLLYQIDPNWTSRSD--HSSNIKLRI 227
Query: 754 ESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDD 813
S + + ++K + Y++
Sbjct: 228 HS-----------------------IQAEL-RRLLK------------------SKPYEN 245
Query: 814 CLEFMNLIL----ESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVL 869
CL L+L + +F C ++ L + R KQ V+D + L
Sbjct: 246 CL----LVLLNVQNAKAWNAFNLSCKIL--LTT--RFKQ----VTD--FLSAATTTHISL 291
Query: 870 PYIEFLLTGDELGKSIDLL 888
+ LT DE LL
Sbjct: 292 DHHSMTLTPDE---VKSLL 307
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 902 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.51 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.5 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.46 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.45 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.45 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.41 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.3 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.3 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.27 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.25 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.23 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.22 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.19 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.11 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.11 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.1 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.1 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.08 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.07 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.07 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.05 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.05 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.01 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.01 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.0 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.99 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.99 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.98 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.98 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.95 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.94 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.93 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.93 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.92 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.85 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.83 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.83 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.83 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.8 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.8 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.8 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.77 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.77 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.76 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.74 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.73 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.73 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.72 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.71 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.71 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.7 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.7 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.68 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.67 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.65 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.63 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.61 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.59 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.59 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.58 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.57 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.57 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.56 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.55 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.54 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.52 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.52 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.52 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.51 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.49 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.49 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.48 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.47 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.46 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.44 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.43 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.41 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.37 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.37 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.37 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.35 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.35 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.33 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.32 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.32 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.31 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.28 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.27 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.26 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.25 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.23 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.2 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.19 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.18 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.17 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.17 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.14 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.12 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.12 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.12 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.1 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.09 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.09 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.09 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.07 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.03 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.02 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.01 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.01 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.94 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.87 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.81 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.78 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.74 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.73 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.7 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.6 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.6 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.59 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.54 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.48 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.47 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.44 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.4 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.35 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.21 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.17 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.98 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.87 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.83 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.82 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.73 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.71 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.61 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.59 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.42 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.42 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.34 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.31 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.31 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.2 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.96 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.65 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.54 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.46 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.38 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.83 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.76 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.43 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.43 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.07 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.0 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.68 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.71 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.82 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.21 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.18 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.02 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.96 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.65 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.56 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 90.01 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.92 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 89.41 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.18 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.85 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.82 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.05 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.6 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.7 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.22 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.8 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.12 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.12 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=383.92 Aligned_cols=502 Identities=10% Similarity=-0.047 Sum_probs=374.1
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHH
Q 048778 230 LDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVL 309 (902)
Q Consensus 230 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 309 (902)
+++..|+.++..|.+.|++++|..+|++|... .|+..++..++.+|.+.|++++|+.+|+.+... .++..+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 34555555555555555555555555555422 344455555555555555555555555554321 3444555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 048778 310 IKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRI 389 (902)
Q Consensus 310 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 389 (902)
+.+|++.|++++|.++|+++.. +.. ...++.+.++ ...|..++..+|+.++.+|.+.|++
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCT-----TC--------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhHHHHHHHHhccCC-----ccc----cccccccccc-----------cccccchhHHHHHHHHHHHHHcCCH
Confidence 5555555555555555543111 100 0000000000 0123345678888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH--HH-HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 048778 390 IAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAV--HL-LKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIF 466 (902)
Q Consensus 390 ~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~--~~-~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 466 (902)
++|.++|++|.+.+. .+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 999999988887642 24445555554443332222211 11 444444444455667777788899999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048778 467 NSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLK 546 (902)
Q Consensus 467 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 546 (902)
+++.+. +++..+++.++.+|.+.|++++|..+|+++.+.+. .+..++..++.+|.+.|+.++|..+++++.+. .+.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-Ccc
Confidence 998875 57899999999999999999999999999988753 37788999999999999999999999999864 346
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 547 TPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIIN 626 (902)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (902)
+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 78899999999999999999999999998743 3468899999999999999999999999999874 668899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHh
Q 048778 627 GLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVAN----GCQLN--SNVYSALLAGLVS 700 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~~--~~~~~~l~~~~~~ 700 (902)
+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++++++.+. +..|+ ..+|..++..|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999764 567999999999999999999999999999875 66787 7899999999999
Q ss_pred cCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 701 SNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEA 780 (902)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 780 (902)
.| ++++|.+.++++++.+|.+..+|..++.+|...|++++|
T Consensus 529 ~g---------------------------------------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 529 LK---------------------------------------MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp TT---------------------------------------CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hc---------------------------------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 99 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCchHhH--HHHHHHH
Q 048778 781 DRIMKDIMKSGVFPAKAI--TSIIGCY 805 (902)
Q Consensus 781 ~~~~~~~~~~~~~p~~~~--~~l~~~~ 805 (902)
.+.|+++++ ..|+... ..++.+|
T Consensus 570 ~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 570 ITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 999999998 4565544 5555544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=372.76 Aligned_cols=524 Identities=11% Similarity=-0.046 Sum_probs=370.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHH
Q 048778 172 LAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEA 251 (902)
Q Consensus 172 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 251 (902)
+.+.|.+..+...+..+. .++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 556677777777766543 467889999999999999999999999999854 67889999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048778 252 FKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVV 331 (902)
Q Consensus 252 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 331 (902)
..+|+.+... +++..+|+.++.+|++.|++++|+++|+++... .. ...++.+.++ ..
T Consensus 137 ~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~~~~~~-----------~~ 193 (597)
T 2xpi_A 137 KCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPF-----RK----DEKNANKLLM-----------QD 193 (597)
T ss_dssp HHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT-----C--------------C-----------CC
T ss_pred HHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc-----cc----cccccccccc-----------cc
Confidence 9999998643 689999999999999999999999999853221 10 0001111111 11
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH--HH-HHHHHhCCCCCCH
Q 048778 332 KRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAF--EL-LALMEKRTCKPNI 408 (902)
Q Consensus 332 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~--~~-~~~m~~~~~~p~~ 408 (902)
.+.+++..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+..+...+...+..+.+. .+ +..+...+..+..
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 234445666777777777777777777777777664322 3444444444333222221111 11 3444444444445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048778 409 RTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGL 488 (902)
Q Consensus 409 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (902)
.+|+.++..|++.|++++|.++|+++.+. .++..+++.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHH
Confidence 55666667777777777777777776654 3667777777777777777777777777777654 34566777777777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 048778 489 CKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEY 568 (902)
Q Consensus 489 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 568 (902)
.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777776543 3467777777777777777777777777776642 245667778888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 048778 569 AMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDL- 647 (902)
Q Consensus 569 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 647 (902)
++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus 428 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 428 SAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 8888877643 3467788888888888888888888888888764 557788888888888888888888888888764
Q ss_pred ---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCC
Q 048778 648 ---GVSPN--HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSR 722 (902)
Q Consensus 648 ---g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (902)
+..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..+...|.+.|
T Consensus 506 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g-------------------- 564 (597)
T 2xpi_A 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKK-------------------- 564 (597)
T ss_dssp HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTT--------------------
T ss_pred hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC--------------------
Confidence 55677 7788899999999999999999999888753 447788888888888888
Q ss_pred CcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048778 723 LEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELC 772 (902)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 772 (902)
++++|.+.|+++++.+|.++.++..|+..|.
T Consensus 565 -------------------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 565 -------------------IPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred -------------------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 8999999999999988888888888887664
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=278.34 Aligned_cols=204 Identities=14% Similarity=0.175 Sum_probs=133.9
Q ss_pred HHHHHHHHHhCCCCcCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCC---------hh
Q 048778 216 GEMFFCRVLKHGFCLDT-HICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGR---------LD 285 (902)
Q Consensus 216 a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~---------~~ 285 (902)
+..+..++.+.+....+ .+++.+|++|+|.|++++|+++|++|.+. |+.||..|||+||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34444555555544333 24566666677777777777777777665 666777777777766665543 45
Q ss_pred HHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 048778 286 EAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKML 365 (902)
Q Consensus 286 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 365 (902)
+|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048778 366 QDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCR 420 (902)
Q Consensus 366 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~ 420 (902)
+.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..++.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777777777777776664
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-29 Score=276.30 Aligned_cols=203 Identities=17% Similarity=0.184 Sum_probs=153.0
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccC---------CHHHHH
Q 048778 183 AVFVKLIADGFVLSA-IDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGN---------DLKEAF 252 (902)
Q Consensus 183 ~~~~~~~~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---------~~~~A~ 252 (902)
.+.+++.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||.++||+||.+|++.+ .++.|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 334444444443332 2355555555555555555555555555555555555555555555443 468888
Q ss_pred HHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 048778 253 KVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVK 332 (902)
Q Consensus 253 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 332 (902)
++|++|.+. |+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.
T Consensus 91 ~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 91 DIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999887 8889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048778 333 RCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQ 386 (902)
Q Consensus 333 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 386 (902)
|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999998888763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-26 Score=247.93 Aligned_cols=378 Identities=13% Similarity=0.050 Sum_probs=270.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048778 450 VDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKT 529 (902)
Q Consensus 450 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 529 (902)
...+.+.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 344556677777777776666543 3345555566666667777777777776666653 34666777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048778 530 GEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVM 609 (902)
Q Consensus 530 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (902)
++|...|+++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777776642 2334567777777777777777777777777643 223455666777777778888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH
Q 048778 610 KLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NS 688 (902)
Q Consensus 610 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~ 688 (902)
.+.. +.+..+|..+...+...|++++|+..|+++.+.+ +.+...|..+...+...|++++|...++++.+. .| +.
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 7753 4456778888888888888888888888887754 445677778888888888888888888887763 44 46
Q ss_pred HHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 048778 689 NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLV 768 (902)
Q Consensus 689 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 768 (902)
.++..+...+...| ++++|.+.|+++++.+|.++.+|..++
T Consensus 238 ~~~~~l~~~~~~~g---------------------------------------~~~~A~~~~~~al~~~p~~~~~~~~l~ 278 (388)
T 1w3b_A 238 VVHGNLACVYYEQG---------------------------------------LIDLAIDTYRRAIELQPHFPDAYCNLA 278 (388)
T ss_dssp HHHHHHHHHHHHTT---------------------------------------CHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---------------------------------------CHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 67777777777777 888888888888888888888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 048778 769 VELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGR 845 (902)
Q Consensus 769 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~ 845 (902)
..+.+.|++++|++.|+++++. .|+... ..++.++...|++++|...++++.+. .| +...+..++.+|.+.|+
T Consensus 279 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 279 NALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCC
Confidence 8888888888888888888874 344333 77888888888888888888888764 34 35777788888888888
Q ss_pred HHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCC
Q 048778 846 NKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGD 879 (902)
Q Consensus 846 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 879 (902)
+++|+..++++++..+. ....|..++..+.+.|
T Consensus 355 ~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 355 LQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHcc
Confidence 88888888888765432 3445666666555544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-25 Score=245.62 Aligned_cols=377 Identities=15% Similarity=0.081 Sum_probs=249.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 048778 417 GLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPEL 496 (902)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 496 (902)
.+.+.|++++|...+.++.+..+ .+...+..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 34445555555555555444321 223334444445555555555555555555432 3455556666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048778 497 ANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILK 576 (902)
Q Consensus 497 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (902)
|...|+++.+.. +.+..++..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++.+
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666555542 2234455566666666666666666666665532 12334455556666666777777777776665
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048778 577 FGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITY 656 (902)
Q Consensus 577 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 656 (902)
.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...|..+...+...|++++|+..+++..... +.+..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 32 2246677777777777788888888888777753 4456677777788888888888888888777653 3457777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKN 736 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (902)
..++.++.+.|++++|.+.++++++.. +.+..+|..+...+.+.|
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g---------------------------------- 285 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKG---------------------------------- 285 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHS----------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC----------------------------------
Confidence 788888888888888888888887631 234667777777777777
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDC 814 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A 814 (902)
++++|.+.|+++++..|.+..++..++..+.+.|++++|++.++++++ ..|+... ..++.+|.+.|++++|
T Consensus 286 -----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 286 -----SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp -----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred -----CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888888888888888888888888888888888877 4455443 7788888888888888
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 048778 815 LEFMNLILESGFVPS-FESHCTVIQGLQSEG 844 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g 844 (902)
...++++++. .|+ ...|..++..+...|
T Consensus 359 ~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 359 LMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 8888888764 454 477777777776655
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-23 Score=236.26 Aligned_cols=449 Identities=11% Similarity=-0.014 Sum_probs=305.1
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048778 338 AHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEG 417 (902)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~ 417 (902)
...+......+.+.|++++|...|+++.+.+ |+...|..+..++.+.|++++|.+.++++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4455666677777777777777777777654 567777777777777777777777777776653 2345666777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 048778 418 LCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELA 497 (902)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 497 (902)
+...|++++|...|+++...+. ++......++..+.+......+.+.+..+...+..|+...+..-.....
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------- 153 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKD-------- 153 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHh--------
Confidence 7777777777777777766543 3444444444444443333333333333333222222221111100000
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---cCChhHHHHHHHHH
Q 048778 498 NGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCK---ENKLKEEYAMFGKI 574 (902)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 574 (902)
.....|+.......+..+...... .....+.+...+......+.. .|++++|...|+++
T Consensus 154 --------~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 154 --------KQENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred --------hccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 001112222111111100000000 000001123334444444443 78888888888888
Q ss_pred HH-----CCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 575 LK-----FGL--------VPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLL 641 (902)
Q Consensus 575 ~~-----~~~--------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 641 (902)
.+ ... +.+..++..+...+...|++++|...|+++.+.. |+...+..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 76 211 1235677888889999999999999999998864 44788899999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCC
Q 048778 642 FKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSS 721 (902)
Q Consensus 642 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (902)
+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~------------------- 352 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYREN------------------- 352 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTT-------------------
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcC-------------------
Confidence 9999764 5567889999999999999999999999998752 335677888888888877
Q ss_pred CCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-----
Q 048778 722 RLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK----- 796 (902)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----- 796 (902)
++++|...++++++..|.+..++..++..|...|++++|+..++++.+.. |+.
T Consensus 353 --------------------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~ 410 (514)
T 2gw1_A 353 --------------------KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE--NKLDGIYV 410 (514)
T ss_dssp --------------------CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTSSSCSS
T ss_pred --------------------CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh--hccchHHH
Confidence 99999999999999999999999999999999999999999999998743 333
Q ss_pred ---hHHHHHHHHHc---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 797 ---AITSIIGCYCK---ERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 797 ---~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
....++.+|.. .|++++|...++++.+.. ..+...+..++.++.+.|++++|...++++++..+.
T Consensus 411 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 22889999999 999999999999999753 235688889999999999999999999999887643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-22 Score=230.99 Aligned_cols=455 Identities=10% Similarity=-0.004 Sum_probs=302.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 268 SVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDR 347 (902)
Q Consensus 268 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 347 (902)
...|......+.+.|++++|+..|+++.+.+ |+..+|..+..++.+.|++++|.+.++++.+.++ .+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 3455666666777777777777777776653 5666666666777777777777777776665532 245666666666
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 348 LCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKA 427 (902)
Q Consensus 348 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A 427 (902)
|.+.|++++|...|+++...+. ++......++..+.+......+.+.+..+...+..|+...+..-......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------- 154 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK------- 154 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh-------
Confidence 7777777777777766666542 23334444444444433333333334333333222222221111000000
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHH
Q 048778 428 VHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCK---LGKPELANGFFGLM 504 (902)
Q Consensus 428 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~ 504 (902)
....|+...... +.......... ....-+.+...+......+.. .|++++|...++++
T Consensus 155 ---------~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 155 ---------QENLPSVTSMAS----FFGIFKPELTF------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHH----HHTTSCCCCCC------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ---------ccCCchhHHHHH----HHhhcCHHHHH------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 001122111111 11000000000 000001224444444444444 78888888888887
Q ss_pred HH-----CCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 048778 505 VK-----KGI--------SPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMF 571 (902)
Q Consensus 505 ~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 571 (902)
.+ ..- +.+..++..+...+...|++++|...++++.+.... ...+..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77 311 123556777888889999999999999998876433 778888899999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 048778 572 GKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSP 651 (902)
Q Consensus 572 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 651 (902)
+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 370 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PE 370 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-cc
Confidence 9988753 3367788899999999999999999999998864 5567788999999999999999999999998753 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh---cCCcCCccccccccCCCCCCCCC
Q 048778 652 NHITYSILVRAHASTGRLDHAFKIVSFMVANGC-QLN----SNVYSALLAGLVS---SNKASGVLSISTSCHSDAGSSRL 723 (902)
Q Consensus 652 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 723 (902)
+...+..++..+...|++++|...++++.+... .++ ...+..+...+.. .|
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------------- 429 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE--------------------- 429 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT---------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC---------------------
Confidence 678899999999999999999999999986311 111 3377778888877 77
Q ss_pred cCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH
Q 048778 724 EHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
++++|.+.++++++..|.+..++..++..|...|++++|.+.|+++.+. .|+...
T Consensus 430 ------------------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~ 484 (514)
T 2gw1_A 430 ------------------NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEE 484 (514)
T ss_dssp ------------------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHH
T ss_pred ------------------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHH
Confidence 9999999999999999999999999999999999999999999999984 455443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-18 Score=195.70 Aligned_cols=722 Identities=11% Similarity=0.108 Sum_probs=437.5
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHHHhccCChhhHHHHHHHHHhhhhCC------------C
Q 048778 91 RFFKWVCKQSTYCYDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDDILKLIVALDGLSKDG------------F 158 (902)
Q Consensus 91 ~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------------~ 158 (902)
-+|.|+...-+++.+++.....+.+.++.|.+.+++.+... +.|.++ +++..++.+.+-.+ +
T Consensus 710 gl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~re--s~~y~~----e~vk~flk~~kl~d~~pli~vCdr~~~ 783 (1630)
T 1xi4_A 710 GLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRE--SNCYDP----ERVKNFLKEAKLTDQLPLIIVCDRFDF 783 (1630)
T ss_pred hHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhcc--CCCCCH----HHHHHHHhhCCCCCCCCceeecccccc
Confidence 34567777777889999999999999999999998876543 122221 12333333332222 1
Q ss_pred CCCHhhH------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhcCChHHHHHHHH
Q 048778 159 KLNYPCY------SCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAI-----------DYRSVINALCKSGLVRAGEMFFC 221 (902)
Q Consensus 159 ~~~~~~~------~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-----------~~~~ll~~~~~~~~~~~a~~~~~ 221 (902)
..+...| ...|..|+..-++..+-.+...+.+.++..|.. ...-++..+-+.+++.--..+++
T Consensus 784 v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE 863 (1630)
T 1xi4_A 784 VHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLE 863 (1630)
T ss_pred HHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 223445554444444444444444333322211 12334444445566666666777
Q ss_pred HHHhCCCCcCHHHHHHHHHHHhccCC-HHHHH--------HHHHHhhhcCCCCCCHh---------------------hH
Q 048778 222 RVLKHGFCLDTHICTSLVLGHCRGND-LKEAF--------KVFDVMSKEASYRPNSV---------------------TF 271 (902)
Q Consensus 222 ~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~--------~~~~~m~~~~~~~~~~~---------------------~~ 271 (902)
.-+..| ..++.++|+|...|...+. .+.-+ .+.-+..++ -.|... .|
T Consensus 864 ~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~--rDp~la~iay~~g~~d~eli~vt~~n~l~ 940 (1630)
T 1xi4_A 864 ARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEK--RDPHLACVAYERGQCDLELINVCNENSLF 940 (1630)
T ss_pred HHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHh--cCcchHHHHhcccCCcHHHHHHHhcchhH
Confidence 777777 6788899999999886553 22210 011111110 012110 12
Q ss_pred HHHHHHHHhcCChhHHHH-----------HHHHHHHCCC--CcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CC
Q 048778 272 TTLIHGLCEVGRLDEAFS-----------LKDEMCEKGW--QPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRC--KP 336 (902)
Q Consensus 272 ~~li~~~~~~g~~~~A~~-----------~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~ 336 (902)
....+-+.+..+.+-=-. +.+......+ .-++.--...+.+|...|.+.+|++++++..-.+- .-
T Consensus 941 k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~ 1020 (1630)
T 1xi4_A 941 KSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE 1020 (1630)
T ss_pred HHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccc
Confidence 222222222222221111 1111111000 11233335566778888888999998888874321 12
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048778 337 NAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELME 416 (902)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~ 416 (902)
+...-+.++.+..+. +..+..+..++.-.. + ...+...+...|.+++|..+|++... .....+.++.
T Consensus 1021 n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie 1087 (1630)
T 1xi4_A 1021 HRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE 1087 (1630)
T ss_pred cHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH
Confidence 445666677776666 556666666555421 2 33466777889999999999998631 2222333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 048778 417 GLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPEL 496 (902)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 496 (902)
..+++++|.++.++. .+..+|..+..++.+.|++++|.+.|.+. .|...|..++..+.+.|++++
T Consensus 1088 ---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEE 1152 (1630)
T 1xi4_A 1088 ---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE 1152 (1630)
T ss_pred ---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHH
Confidence 678899999988865 45778999999999999999999999664 478889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048778 497 ANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILK 576 (902)
Q Consensus 497 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (902)
|.+++....+.. +++...+.++.+|++.+++++...+ .+ .++...+..+...|...|++++|..+|...
T Consensus 1153 AIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1153 LVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred HHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence 999999887764 3444444689999999998864433 22 256677778999999999999999999985
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048778 577 FGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITY 656 (902)
Q Consensus 577 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 656 (902)
..|..+..+|.+.|++++|++.+++. .+..+|..+..+|...|++..|...... +..+...+
T Consensus 1222 -------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deL 1283 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADEL 1283 (1630)
T ss_pred -------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHH
Confidence 37999999999999999999999987 3668999999999999999999886653 34567778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC--CcCCccccccccCCCCCCCCCc------CCc
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSN--KASGVLSISTSCHSDAGSSRLE------HDD 727 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~~~ 727 (902)
..++..|.+.|.+++|+.+++..+. +.+ ....|.-|...+.+.. +..+.+..+..- .+++ ...
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEhlk~f~~r------ini~k~~r~~e~~ 1355 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSR------VNIPKVLRAAEQA 1355 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh------cccchHhHHHHHH
Confidence 8999999999999999999988874 444 4567767777776655 111111111110 0111 122
Q ss_pred chhhhhhhhhhhhccHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHhcC---------------CHHHH
Q 048778 728 DDYERSSKNFLREMDVEHAFRLRDRIESC------------GGSTTDFYNFLVVELCRAG---------------RIVEA 780 (902)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g---------------~~~~A 780 (902)
..|...+..|.+.|+++.|....-+-... .+.|+..|...+..|.... +++.+
T Consensus 1356 ~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~ 1435 (1630)
T 1xi4_A 1356 HLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRA 1435 (1630)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHH
Confidence 34555566666677777776322211111 2556777777777777666 56666
Q ss_pred HHHHHHHHHc--------CC--CchHhH-HHHHHHHHccCChHHHHHHHHHHHH-------cCCC-CCHHHHHHHH-HHH
Q 048778 781 DRIMKDIMKS--------GV--FPAKAI-TSIIGCYCKERKYDDCLEFMNLILE-------SGFV-PSFESHCTVI-QGL 840 (902)
Q Consensus 781 ~~~~~~~~~~--------~~--~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~-p~~~~~~~l~-~~l 840 (902)
..+|.+.-.. .+ ..+... ..+.+.|....+++.-.+..+.--. ..++ -+..-+..++ .+|
T Consensus 1436 V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly 1515 (1630)
T 1xi4_A 1436 VNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLF 1515 (1630)
T ss_pred HHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 6655521000 00 011111 4444455544443321111111000 0000 0111122233 345
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 841 QSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 841 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
.+.|+|.+|.+++++. + .|...+....+.|+.+.+.+++.-....|
T Consensus 1516 ~~n~~~~~ai~l~k~d---~------l~~dAm~~a~~S~d~e~~e~ll~~F~~~~ 1561 (1630)
T 1xi4_A 1516 KGNNRWKQSVELCKKD---S------LYKDAMQYASESKDTELAEELLQWFLQEE 1561 (1630)
T ss_pred HhcCcHHHHHHHHHhc---c------CHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5558888888888772 1 34455667777788877777777665553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-21 Score=217.11 Aligned_cols=320 Identities=13% Similarity=0.049 Sum_probs=195.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048778 407 NIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIID 486 (902)
Q Consensus 407 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (902)
+...+..+...+.+.|++++|..+|+++.+... .+..++..+...+...|++++|...|+++.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 344555555555555556556555555554321 344555555555555555555555555555543 234455555555
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 048778 487 GLCKLGKPELANGFFGLMVKKGISPDE---ATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENK 563 (902)
Q Consensus 487 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 563 (902)
.|.+.|++++|...|+++.+... .+. ..+..++..+... .+..+...+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 55555555555555555554421 122 3333333221100 11122344666677
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 564 LKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFK 643 (902)
Q Consensus 564 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 643 (902)
+++|...|+++.+.. +.+...+..++.+|.+.|++++|++.|+++.+.. +.+..+|..++.+|...|++++|+..+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777776542 2356667777777777777777777777776643 45566777777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCcCC
Q 048778 644 MFDLGVSPNHITYSIL------------VRAHASTGRLDHAFKIVSFMVANGCQLN-----SNVYSALLAGLVSSNKASG 706 (902)
Q Consensus 644 m~~~g~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~l~~~~~~~~~~~~ 706 (902)
+.... +.+...+..+ +..+.+.|++++|...++++++. .|+ ...+..+...+.+.|
T Consensus 237 ~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g---- 309 (450)
T 2y4t_A 237 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDE---- 309 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTT----
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCC----
Confidence 76542 3334444443 67777778888888888887763 343 335666666666666
Q ss_pred ccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 707 VLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
++++|...++++++..|.+..+|..++.+|...|++++|+..+++
T Consensus 310 -----------------------------------~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 310 -----------------------------------KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------------------------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888888888888877777788888888888888888888888888
Q ss_pred HHHcCCCchHhH
Q 048778 787 IMKSGVFPAKAI 798 (902)
Q Consensus 787 ~~~~~~~p~~~~ 798 (902)
+++ ..|+...
T Consensus 355 al~--~~p~~~~ 364 (450)
T 2y4t_A 355 AQE--HNENDQQ 364 (450)
T ss_dssp HHT--TSSSCHH
T ss_pred HHH--hCcchHH
Confidence 877 4455443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-17 Score=190.34 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHHHhccCChhh---------HHHHHHHHHhhhh
Q 048778 85 NTELGVRFFKWVCKQSTYCYDVNSRIHLLNLVVSCNLYGVAHKAIIELIKECSDSKDD---------ILKLIVALDGLSK 155 (902)
Q Consensus 85 ~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~a~~~~~~~~~ 155 (902)
+|+.|..|-..+.+..+ .......++..+...+.+.++-.++-..++......+. +.-|-++=+.+..
T Consensus 525 ~P~~~~~fa~~L~~~~~---p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~ 601 (1630)
T 1xi4_A 525 SPDQGQQFAQMLVQDEE---PLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILG 601 (1630)
T ss_pred ChHHHHHHHHHHhcCCC---CccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHh
Confidence 38888888887766532 34456778888999999999888887777654221110 1112233344444
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048778 156 DGFKLNYPCYSCLLMSLAKLDLGFVAYAVFVKLI 189 (902)
Q Consensus 156 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 189 (902)
.+.. +..-|..+...+-++|.++.|++.|..+.
T Consensus 602 ~~~f-thyd~~~IA~LCE~aGl~qrale~y~d~~ 634 (1630)
T 1xi4_A 602 NQMF-THYDRAHIAQLCEKAGLLQRALEHFTDLY 634 (1630)
T ss_pred cCcc-ccccHHHHHHHHHHcCcHHHHHHhcCCHH
Confidence 4433 66677888889999999999999988653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-21 Score=212.34 Aligned_cols=312 Identities=16% Similarity=0.103 Sum_probs=160.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 048778 476 PDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFL 555 (902)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 555 (902)
.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..+|...|++++|...|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345566666666666666666666666666542 2356666666666666666666666666666542 23355556666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 556 DVLCKENKLKEEYAMFGKILKFGLVPS-V---VTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQR 631 (902)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 631 (902)
..|.+.|++++|...|+++.+. .|+ . ..+..++..+.. ..+..+...+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGS 156 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHc
Confidence 6666666666666666666553 232 2 344444332000 0011112234445
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccc
Q 048778 632 GRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSIS 711 (902)
Q Consensus 632 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 711 (902)
|++++|+..++++.+.. +.+...+..++.+|.+.|++++|.+.++++.+. .+.+..++..++..+...|
T Consensus 157 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g--------- 225 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLG--------- 225 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTT---------
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC---------
Confidence 55555555555554432 334444555555555555555555555555442 1223444445555554444
Q ss_pred cccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHhcCCHHH
Q 048778 712 TSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFL------------VVELCRAGRIVE 779 (902)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~ 779 (902)
++++|...|+++++..|.+...+..+ +..+...|++++
T Consensus 226 ------------------------------~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 275 (450)
T 2y4t_A 226 ------------------------------DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 275 (450)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ------------------------------CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555545544444443 555555555555
Q ss_pred HHHHHHHHHHcCCCchH-----hH-HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 048778 780 ADRIMKDIMKSGVFPAK-----AI-TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNL 852 (902)
Q Consensus 780 A~~~~~~~~~~~~~p~~-----~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~ 852 (902)
|+..|+++++.. |+. .. ..++.++.+.|++++|+..++++.+. .| +...|..++.++...|++++|+..
T Consensus 276 A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~ 351 (450)
T 2y4t_A 276 ATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQD 351 (450)
T ss_dssp HHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 555555555522 221 11 44455555555555555555555543 23 345555555555555555555555
Q ss_pred HHHHHhC
Q 048778 853 VSDLFRY 859 (902)
Q Consensus 853 ~~~~~~~ 859 (902)
++++++.
T Consensus 352 ~~~al~~ 358 (450)
T 2y4t_A 352 YETAQEH 358 (450)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 5555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-21 Score=221.72 Aligned_cols=431 Identities=10% Similarity=0.001 Sum_probs=325.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 048778 372 GVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVD 451 (902)
Q Consensus 372 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 451 (902)
....|..+...+.+.|++++|.+.|+++.+.. +.+..++..+..++.+.|++++|...++++.+... .+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 34667888889999999999999999988764 34778888999999999999999999999988643 46778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHh
Q 048778 452 GFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKK------GISPDEATITALADGHCK 525 (902)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~ 525 (902)
.+...|++++|...|+.+.. .|+ .....+..+...+....|...++.+... ...|+.. .+..+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhc---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHHH
Confidence 99999999999999964432 222 2222344555666677888888887653 1233333 3344555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCC--------HHHHHH
Q 048778 526 NGKTGEALMIFERMVQNTDLKTPH-VLNSFLDVLCKE--------NKLKEEYAMFGKILKFGLVPS--------VVTYTI 588 (902)
Q Consensus 526 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~p~--------~~~~~~ 588 (902)
..+.+.+...+...... .+... ....+...+... |++++|..+++++.+.. |+ ..++..
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCY 248 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHH
Confidence 66666655444333221 12111 233333333222 47889999999998743 43 235667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 589 LVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGR 668 (902)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 668 (902)
+...+...|++++|...|+++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 778888999999999999999986 5668889999999999999999999999998764 5578899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHH
Q 048778 669 LDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFR 748 (902)
Q Consensus 669 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 748 (902)
+++|...++++.+.. +.+...+..+...+...| ++++|..
T Consensus 326 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g---------------------------------------~~~~A~~ 365 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQG---------------------------------------KFTESEA 365 (537)
T ss_dssp HHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTT---------------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC---------------------------------------CHHHHHH
Confidence 999999999998742 335678888888888888 9999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--------HHHHHHHHcc----------CC
Q 048778 749 LRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--------TSIIGCYCKE----------RK 810 (902)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--------~~l~~~~~~~----------g~ 810 (902)
.++++++..|.+...+..++..+...|++++|+..|+++++.. |+... ..++.+|... |+
T Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 366 FFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 9999999999999999999999999999999999999998743 33221 3446778888 99
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048778 811 YDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE 863 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 863 (902)
+++|...++++.+.. ..+...+..++.+|.+.|++++|+..++++++.....
T Consensus 444 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 444 FNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 999999999999752 2356888999999999999999999999998876543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-20 Score=215.46 Aligned_cols=446 Identities=12% Similarity=0.025 Sum_probs=273.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048778 269 VTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRL 348 (902)
Q Consensus 269 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 348 (902)
..|..+...+.+.|++++|++.|+++.+... .+..++..+..++.+.|++++|++.++++.+.+. .+..++..+...+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHH
Confidence 4455555566666666666666666555421 2444555555555555555555555555554432 2444555555555
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 349 CREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAV 428 (902)
Q Consensus 349 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 428 (902)
...|++++|...|+.+ .. .|+ .....+..+...+...+|...++.+.... |
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~---------------------- 154 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKD--E---------------------- 154 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred HHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhC--c----------------------
Confidence 5555555555555422 11 111 11112223333333444444444443320 0
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHH--------HhcCChhHHHH
Q 048778 429 HLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGF-TFTSIIDGL--------CKLGKPELANG 499 (902)
Q Consensus 429 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~--------~~~g~~~~A~~ 499 (902)
+..+........+..+....+.+.+...+...... .+... ....+...+ ...|++++|..
T Consensus 155 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 155 ---------GRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp -------------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred ---------cccccccchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 00001111122223333344444433333222211 11111 111111111 11246677777
Q ss_pred HHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 048778 500 FFGLMVKKGISPD-------EATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFG 572 (902)
Q Consensus 500 ~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 572 (902)
+++++.+.... + ..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++
T Consensus 224 ~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 224 MYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777765322 2 2245566677788888888988888888753 447778888888888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 048778 573 KILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPN 652 (902)
Q Consensus 573 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 652 (902)
++.+.. +.+..+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+
T Consensus 301 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~ 377 (537)
T 3fp2_A 301 KAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTL 377 (537)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 888753 3367889999999999999999999999998864 4456788999999999999999999999998764 556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCc
Q 048778 653 HITYSILVRAHASTGRLDHAFKIVSFMVANGC-----QLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDD 727 (902)
Q Consensus 653 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (902)
...+..+...+...|++++|...++++.+... ......+..+...+...+.
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~------------------------ 433 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS------------------------ 433 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHT------------------------
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhh------------------------
Confidence 77899999999999999999999999886321 0111222233334444400
Q ss_pred chhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 728 DDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
....+...|++++|...|+++++.+|.+..++..++..|...|++++|.+.|+++++..
T Consensus 434 -----~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 434 -----QDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp -----C----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----ccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 00001111499999999999999999999999999999999999999999999999854
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-18 Score=184.35 Aligned_cols=314 Identities=13% Similarity=0.058 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 048778 479 FTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVL 558 (902)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 558 (902)
..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~------------ 69 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MD------------ 69 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC------------
Confidence 344445555555555555555555555442 2234445555555555555555555555544431 12
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CCHHHHH------------H
Q 048778 559 CKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCP---PNVHTYT------------V 623 (902)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~~~~~~------------~ 623 (902)
+...|..+...+...|++++|...|+++.+.. + .+...+. .
T Consensus 70 -----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 125 (359)
T 3ieg_A 70 -----------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRS 125 (359)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------cchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555444431 1 1222222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 624 IINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNK 703 (902)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~ 703 (902)
+...+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..+...+...|
T Consensus 126 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~- 202 (359)
T 3ieg_A 126 QALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLG- 202 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-
Confidence 3567788888888888888888754 556788888888888889999999888888864 2346677777888887777
Q ss_pred cCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHH
Q 048778 704 ASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFL------------VVEL 771 (902)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~ 771 (902)
++++|.+.++++++..|.+...+..+ +..+
T Consensus 203 --------------------------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 244 (359)
T 3ieg_A 203 --------------------------------------DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 244 (359)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999888888877766533 7779
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCchHhH----HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH
Q 048778 772 CRAGRIVEADRIMKDIMKSGVFPAKAI----TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRN 846 (902)
Q Consensus 772 ~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~ 846 (902)
...|++++|+..++++.+..+...... ..++.+|...|++++|...++++.+. .| +...+..++.++...|++
T Consensus 245 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~ 322 (359)
T 3ieg_A 245 IRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMY 322 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCH
Confidence 999999999999999998543322211 45788999999999999999999975 45 578899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCcchhHHHHHHH
Q 048778 847 KQAKNLVSDLFRYNGIEEKAAVLPYIEF 874 (902)
Q Consensus 847 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 874 (902)
++|...++++++..+. +...+..+..+
T Consensus 323 ~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 349 (359)
T 3ieg_A 323 DEAIQDYEAAQEHNEN-DQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 9999999999877533 23344444433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-18 Score=182.09 Aligned_cols=198 Identities=15% Similarity=0.051 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 446 YNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCK 525 (902)
Q Consensus 446 ~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 525 (902)
+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 3334444444445555555444444432 2234444444455555555555555555544432 1134444455555555
Q ss_pred cCCHHHHHHHHHHHHhCCCC--CChhhHH------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 526 NGKTGEALMIFERMVQNTDL--KTPHVLN------------SFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVD 591 (902)
Q Consensus 526 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 591 (902)
.|++++|...++++.+.... .+...+. .+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 162 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAE 162 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 55555555555555442110 0111111 22345555556666666665555432 224455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 048778 592 GLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDL 647 (902)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 647 (902)
.+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566666666666666555542 344555555555555666666666666555543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-16 Score=176.30 Aligned_cols=265 Identities=12% Similarity=0.019 Sum_probs=122.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHH
Q 048778 393 FELLALMEKRTCKPNIRTYNELMEGLCR----MNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCR----EGQLDIALK 464 (902)
Q Consensus 393 ~~~~~~m~~~~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~ 464 (902)
++.+....+.| +...+..+...|.. .++.++|...|++..+.| +...+..|...|.. .+++++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 34444444432 44445555555554 555555555555555532 33444445555555 555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 048778 465 IFNSMSIFGLVPDGFTFTSIIDGLCK----LGKPELANGFFGLMVKKGISPDEATITALADGHCK----NGKTGEALMIF 536 (902)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 536 (902)
.|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|...|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 555555443 34444445555544 445555555555555443 34444444444444 44455555555
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 048778 537 ERMVQNTDLKTPHVLNSFLDVLCK----ENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFR----AGNIALAMSMIEV 608 (902)
Q Consensus 537 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 608 (902)
++..+. .++..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+.|++
T Consensus 175 ~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQ---GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHC---CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554443 233444444444444 444555555554444432 33344444444443 4444444444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 048778 609 MKLAGCPPNVHTYTVIINGLCQ----RGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAST-----GRLDHAFKIVSFM 679 (902)
Q Consensus 609 m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m 679 (902)
..+.| +...+..+...|.. .++.++|+.+|++..+.| +...+..+...|... +++++|+.++++.
T Consensus 249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 44432 23333334444443 444444444444444332 233334444444443 4444444444444
Q ss_pred HH
Q 048778 680 VA 681 (902)
Q Consensus 680 ~~ 681 (902)
.+
T Consensus 323 ~~ 324 (490)
T 2xm6_A 323 AE 324 (490)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-16 Score=174.73 Aligned_cols=382 Identities=12% Similarity=0.028 Sum_probs=278.6
Q ss_pred CHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCH
Q 048778 337 NAHTYTVLIDRLCR----EGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCK----QGRIIAAFELLALMEKRTCKPNI 408 (902)
Q Consensus 337 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~ 408 (902)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55556666666666 667777777777776653 45566666666666 677777777777776654 45
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 048778 409 RTYNELMEGLCR----MNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCR----EGQLDIALKIFNSMSIFGLVPDGFT 480 (902)
Q Consensus 409 ~t~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~ 480 (902)
..+..|...|.. .++.++|...|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +..+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 555566666666 667777777777777654 45566666666665 677888888888877754 6677
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHH
Q 048778 481 FTSIIDGLCK----LGKPELANGFFGLMVKKGISPDEATITALADGHCK----NGKTGEALMIFERMVQNTDLKTPHVLN 552 (902)
Q Consensus 481 ~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 552 (902)
+..+...|.. .++.++|...|++..+.| +...+..+...|.. .++.++|..+|++..+. .++..+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ---GNSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT---TCHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHH
Confidence 7777777776 778888888888877764 56667777777775 77888888888888775 3455666
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 553 SFLDVLCK----ENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRA-----GNIALAMSMIEVMKLAGCPPNVHTYTV 623 (902)
Q Consensus 553 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ 623 (902)
.+...|.. .++.++|...|++..+.| +...+..+...|... +++++|+..|++..+.| +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 67777776 788888998888887753 566777778888877 89999999999998875 5567777
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 624 IINGLCQRG---RFKEAEMLLFKMFDLGVSPNHITYSILVRAHAS----TGRLDHAFKIVSFMVANGCQLNSNVYSALLA 696 (902)
Q Consensus 624 li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 696 (902)
+...|...| ++++|+.+|++..+.| +...+..+...|.. .+++++|.+++++..+.| +...+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 787787766 7889999999998864 67788888888888 889999999999998864 4667777777
Q ss_pred HHHh----cCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCC---CCHHHHHHHHH
Q 048778 697 GLVS----SNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGG---STTDFYNFLVV 769 (902)
Q Consensus 697 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~ 769 (902)
.|.. .+ +.++|...|+++.+.+| .++.+...|+.
T Consensus 408 ~y~~g~g~~~---------------------------------------d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 408 IYYYGLGVER---------------------------------------DYVQAWAWFDTASTNDMNLFGTENRNITEKK 448 (490)
T ss_dssp HHHHTSSSCC---------------------------------------CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred HHHcCCCCCC---------------------------------------CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence 7766 34 99999999999998883 36777777766
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 048778 770 ELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~ 789 (902)
.+.. +.+.|.++..+..+
T Consensus 449 ~~~~--~~~~a~~~a~~~~~ 466 (490)
T 2xm6_A 449 LTAK--QLQQAELLSQQYIE 466 (490)
T ss_dssp SCHH--HHHHHHHHHHHHHH
T ss_pred cCHh--HHHHHHHHHHHHHH
Confidence 5443 34455544444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6e-18 Score=179.41 Aligned_cols=293 Identities=11% Similarity=-0.017 Sum_probs=235.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 545 LKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVI 624 (902)
Q Consensus 545 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 624 (902)
..++..+..+...+...|++++|..+|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3556677778888888899999999998888753 2345566667788889999999999999988864 5567788888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 625 INGLCQRG-RFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNK 703 (902)
Q Consensus 625 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~ 703 (902)
...+...| ++++|...++++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~- 173 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN- 173 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT-
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh-
Confidence 99999999 8999999999998764 4567788899999999999999999999998752 334566777888888888
Q ss_pred cCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048778 704 ASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRI 783 (902)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 783 (902)
++++|.+.++++++..|.+..++..++..+...|++++|+..
T Consensus 174 --------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 174 --------------------------------------NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp --------------------------------------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------------------------hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHH
Confidence 999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC-------chH-hH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 784 MKDIMKSGVF-------PAK-AI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVS 854 (902)
Q Consensus 784 ~~~~~~~~~~-------p~~-~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~ 854 (902)
++++.+.... |+. .. ..++.+|...|++++|...++++.+.. ..+...+..++.++.+.|++++|...++
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999874211 222 23 889999999999999999999998753 2356888899999999999999999999
Q ss_pred HHHhCCCCCcchhHHHHHHHH-hcCCcHh
Q 048778 855 DLFRYNGIEEKAAVLPYIEFL-LTGDELG 882 (902)
Q Consensus 855 ~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 882 (902)
++++..+. +...+..+..++ ...|+.+
T Consensus 295 ~al~~~p~-~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 295 TALGLRRD-DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTTTTCSC-CHHHHHHHHHHHHTTTTC--
T ss_pred HHHccCCC-chHHHHHHHHHHHHHhCchh
Confidence 98666532 455666777766 4556653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-16 Score=178.23 Aligned_cols=419 Identities=12% Similarity=0.043 Sum_probs=294.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048778 406 PNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSII 485 (902)
Q Consensus 406 p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 485 (902)
-|...|..++. +.+.|++++|..+++++++.- +.+...|..++..+.+.|++++|..+|+++... .|+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 36778888887 477899999999999998753 346677888888888999999999999999876 36777777776
Q ss_pred HHH-HhcCChhHHHH----HHHHHHHC-CCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCChh
Q 048778 486 DGL-CKLGKPELANG----FFGLMVKK-GIS-PDEATITALADGHCK---------NGKTGEALMIFERMVQNTDLKTPH 549 (902)
Q Consensus 486 ~~~-~~~g~~~~A~~----~~~~~~~~-~~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~ 549 (902)
... ...|+.+.|.+ +|+..... |.. ++...|...+....+ .|+++.|..+|++.++........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 35677777665 66665542 433 356677777766544 577888888888887731111112
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHCC---CCCC---
Q 048778 550 VLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVM------KLAG---CPPN--- 617 (902)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~~---~~p~--- 617 (902)
.|..........|. .+...++. .+.+++..|..+++++ .+.. ++|+
T Consensus 167 ~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 167 LWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 22222111100110 01111111 1234566666666652 2221 2444
Q ss_pred -----HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------
Q 048778 618 -----VHTYTVIINGLCQR----GRF----KEAEMLLFKMFDLGVSPNHITYSILVRAHAS-------TGRLD------- 670 (902)
Q Consensus 618 -----~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-------~g~~~------- 670 (902)
...|...+...... ++. ++|..+|++++... +.+...|..++..+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 24555555433222 222 47788999988753 5578889888888876 79987
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHH
Q 048778 671 HAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRL 749 (902)
Q Consensus 671 ~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 749 (902)
+|..++++.++. +.| +...|..++..+.+.| ++++|..+
T Consensus 304 ~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g---------------------------------------~~~~A~~~ 343 (530)
T 2ooe_A 304 EAANIYERAIST-LLKKNMLLYFAYADYEESRM---------------------------------------KYEKVHSI 343 (530)
T ss_dssp HHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTT---------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcC---------------------------------------CHHHHHHH
Confidence 999999999863 344 6788888888888888 99999999
Q ss_pred HHHHHhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHH-HHHccCChHHHHHHHHHHHHcC
Q 048778 750 RDRIESCGGSTT-DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIG-CYCKERKYDDCLEFMNLILESG 825 (902)
Q Consensus 750 ~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~-~~~~~g~~~~A~~~~~~~~~~~ 825 (902)
|+++++..|.++ ..|..++..+.+.|++++|.++|+++++.. |.... ...+. .+...|++++|..+|+++++.
T Consensus 344 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~- 420 (530)
T 2ooe_A 344 YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK- 420 (530)
T ss_dssp HHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-
T ss_pred HHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-
Confidence 999999888775 589999999999999999999999999843 33222 22222 234689999999999999975
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCc--chhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 826 FVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN-GIEE--KAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 826 ~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
.| +...|..++..+.+.|+.++|..++++++... ..|+ ...|..++......|+.+.+.++.+++.+.-
T Consensus 421 -~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 421 -YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp -HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred -CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45 46888999999999999999999999998874 3333 3467777888888999999999999887653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-17 Score=175.84 Aligned_cols=289 Identities=11% Similarity=0.014 Sum_probs=220.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 511 PDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILV 590 (902)
Q Consensus 511 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 590 (902)
.+...+..+...+...|++++|..+|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344556666777777788888888888777653 2445566667777778888888888888877643 23566777788
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048778 591 DGLFRAG-NIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRL 669 (902)
Q Consensus 591 ~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 669 (902)
..+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|+..++++.+.. +.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 8888888 8888888888888764 4456778888888888888888888888888754 44566677788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHH
Q 048778 670 DHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRL 749 (902)
Q Consensus 670 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 749 (902)
++|.+.++++.+. .+.+...+..+...+...| ++++|...
T Consensus 176 ~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~---------------------------------------~~~~A~~~ 215 (330)
T 3hym_B 176 KLAERFFSQALSI-APEDPFVMHEVGVVAFQNG---------------------------------------EWKTAEKW 215 (330)
T ss_dssp HHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTT---------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcc---------------------------------------cHHHHHHH
Confidence 8888888888864 2335677777888888877 88888888
Q ss_pred HHHHHhcC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHH
Q 048778 750 RDRIESCG---------GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 750 ~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~ 818 (902)
++++++.. |.+..++..++..|...|++++|+..++++++.. |+... ..++.+|...|++++|...+
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 88888764 5567789999999999999999999999998844 54443 88899999999999999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHH-HhcCCHH
Q 048778 819 NLILESGFVP-SFESHCTVIQGL-QSEGRNK 847 (902)
Q Consensus 819 ~~~~~~~~~p-~~~~~~~l~~~l-~~~g~~~ 847 (902)
+++.+. .| +...+..++.++ ...|+.+
T Consensus 294 ~~al~~--~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 294 HTALGL--RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HTTTTT--CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHcc--CCCchHHHHHHHHHHHHHhCchh
Confidence 998774 45 467788888877 4556543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-15 Score=171.68 Aligned_cols=429 Identities=11% Similarity=0.014 Sum_probs=298.7
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 361 CGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLF 440 (902)
Q Consensus 361 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 440 (902)
|++.++..+ -+...|..++. +.+.|++++|..+|+.+.+.. +-+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 445554432 37889999998 588999999999999999863 4467789999999999999999999999999853
Q ss_pred CChhhHHHHHHHH-HhcCCHHHHHH----HHHHHHhC-CCC-CCHHHHHHHHHHHHh---------cCChhHHHHHHHHH
Q 048778 441 PDEITYNILVDGF-CREGQLDIALK----IFNSMSIF-GLV-PDGFTFTSIIDGLCK---------LGKPELANGFFGLM 504 (902)
Q Consensus 441 ~~~~~~~~ll~~~-~~~g~~~~A~~----~~~~m~~~-g~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~ 504 (902)
|+...|..++... ...|+.+.|.+ +|+..... |.. ++...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777777776533 35677777665 77776543 443 356788888876655 78999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH------HCC
Q 048778 505 VKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKIL------KFG 578 (902)
Q Consensus 505 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~ 578 (902)
++.........|..........|. ..+..+ +. ...+++++|..++..+. +..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~-------------------l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI-HLAKKM-------------------IE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH-HHHHHH-------------------HH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch-hHHHHH-------------------HH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 884111112333332221111111 011111 10 02234555665555422 111
Q ss_pred ---CCCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cC
Q 048778 579 ---LVPS--------VVTYTILVDGLFRA----GNI----ALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ-------RG 632 (902)
Q Consensus 579 ---~~p~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~g 632 (902)
++|+ ...|...+...... ++. +.+..+|++++... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 2333 24455544332221 222 46778888888752 5577788888887775 68
Q ss_pred CHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCC
Q 048778 633 RFK-------EAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN-S-NVYSALLAGLVSSNK 703 (902)
Q Consensus 633 ~~~-------~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~-~~~~~l~~~~~~~~~ 703 (902)
+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++ +.|+ . ..|..++..+.+.|
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~- 370 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAE- 370 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHH-
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhc-
Confidence 876 8899999888632244688888999999999999999999999997 4554 3 47777777777777
Q ss_pred cCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhcCCHHHHHH
Q 048778 704 ASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVE-LCRAGRIVEADR 782 (902)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~ 782 (902)
++++|.++|+++++..|.+...|...+.. +...|+.++|..
T Consensus 371 --------------------------------------~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 371 --------------------------------------GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp --------------------------------------HHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred --------------------------------------CHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH
Confidence 89999999999998877666666655544 346899999999
Q ss_pred HHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 783 IMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESG-FVPS--FESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 783 ~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
+|+++++.. |+... ..++..+.+.|+.++|..++++++..+ ..|+ ...|...+......|+.+.+..+.+++.
T Consensus 413 ~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 413 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998843 54433 788888889999999999999998753 2332 2467777777778899999999999986
Q ss_pred hCC
Q 048778 858 RYN 860 (902)
Q Consensus 858 ~~~ 860 (902)
+.-
T Consensus 491 ~~~ 493 (530)
T 2ooe_A 491 TAF 493 (530)
T ss_dssp HHT
T ss_pred HHC
Confidence 654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-18 Score=182.95 Aligned_cols=299 Identities=9% Similarity=-0.030 Sum_probs=210.6
Q ss_pred cCChhHHHH-HHHHHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 561 ENKLKEEYA-MFGKILKFGL---VPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKE 636 (902)
Q Consensus 561 ~g~~~~A~~-~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 636 (902)
.|++++|.. .+++...... ..+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355666665 5554443211 1123445666777777777777777777777763 5566677777777777888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcCCccccccccC
Q 048778 637 AEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNS-NVYSALLAGLVSSNKASGVLSISTSCH 715 (902)
Q Consensus 637 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 715 (902)
|+..++++.+.. +.+..++..++.++...|++++|.+.++++.+. .|+. ..+..+.... +
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~---~------------- 177 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGA---G------------- 177 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC-----------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHh---h-------------
Confidence 888887777654 456777777888888888888888888887763 3322 1111110000 0
Q ss_pred CCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048778 716 SDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGS--TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF 793 (902)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 793 (902)
.......+...+..+ ..|++++|...++++++..|. +..++..++..|...|++++|+..++++++. .
T Consensus 178 -------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~ 247 (368)
T 1fch_A 178 -------GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--R 247 (368)
T ss_dssp ---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred -------hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 000000111122222 566999999999999999988 8999999999999999999999999999984 4
Q ss_pred chHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------
Q 048778 794 PAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE-------- 863 (902)
Q Consensus 794 p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~-------- 863 (902)
|+... ..++.+|...|++++|...++++.+.. ..+...+..++.++.+.|++++|+..++++++..+..
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 55443 899999999999999999999999752 2356889999999999999999999999998764332
Q ss_pred --cchhHHHHHHHHhcCCcHhHHHHHHHH
Q 048778 864 --EKAAVLPYIEFLLTGDELGKSIDLLNL 890 (902)
Q Consensus 864 --~~~~~~~l~~~~~~~g~~~~a~~~l~~ 890 (902)
....|..++.++...|++++|..++++
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 156788999999999999999988763
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-17 Score=180.76 Aligned_cols=288 Identities=11% Similarity=-0.018 Sum_probs=218.3
Q ss_pred hcCCHHHHHH-HHHHHHhCCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 048778 525 KNGKTGEALM-IFERMVQNTD---LKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIA 600 (902)
Q Consensus 525 ~~g~~~~A~~-~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 600 (902)
..|++++|.. .+++...... ..+...+..+...+...|++++|...|+++++.. +.+..+|..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777776 6665544311 1134567777888888888888888888888753 346777888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHh
Q 048778 601 LAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSI---------------LVRAHAS 665 (902)
Q Consensus 601 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---------------l~~~~~~ 665 (902)
+|++.|+++.+.. +.+..++..+...+...|++++|...++++.... +.+...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 8888888888764 5577788888888888888888888888888753 222222221 2333448
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHH
Q 048778 666 TGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVE 744 (902)
Q Consensus 666 ~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (902)
.|++++|...++++.+..... +..++..+...+...| +++
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g---------------------------------------~~~ 234 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG---------------------------------------EYD 234 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT---------------------------------------CHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC---------------------------------------CHH
Confidence 899999999999998742111 4788888888898888 999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHH
Q 048778 745 HAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 745 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
+|...++++++..|.+..+|..++..+...|++++|+..|+++++. .|+... ..++.+|...|++++|...++++.
T Consensus 235 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 235 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999984 455444 889999999999999999999998
Q ss_pred HcCCCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 823 ESGFVP----------SFESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 823 ~~~~~p----------~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
+..... ....|..++.++...|++++|..++++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 313 NMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 632111 1578999999999999999999988764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.7e-18 Score=175.68 Aligned_cols=392 Identities=10% Similarity=0.043 Sum_probs=148.6
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 350 REGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVH 429 (902)
Q Consensus 350 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~ 429 (902)
+.|++++|.+.++++ ++..+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 556777777777776 23347777777777777777777777542 466677777777777777777777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048778 430 LLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGI 509 (902)
Q Consensus 430 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 509 (902)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66655553 3445666677777777777777666663 255556777777777777777777777654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 510 SPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTIL 589 (902)
Q Consensus 510 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 589 (902)
..|..+++++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 24666666666666666666666665 24566666666666666666664433321 1223333345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCC------CHHHHHHHHHH
Q 048778 590 VDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMF-DLGVSP------NHITYSILVRA 662 (902)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p------~~~~~~~l~~~ 662 (902)
+..|.+.|.+++|+.+++..+... +-....|+.+.-.|++- ++++..+.++... ..+++| +...|..++..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666665543 44445555555555543 1222222222221 112222 12334445555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhcc
Q 048778 663 HASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMD 742 (902)
Q Consensus 663 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (902)
|.+.++++.|.. .|.+. +|+..--
T Consensus 292 y~~~~e~d~A~~---tm~~h--~~~a~~~--------------------------------------------------- 315 (449)
T 1b89_A 292 YDKYEEYDNAII---TMMNH--PTDAWKE--------------------------------------------------- 315 (449)
T ss_dssp HHHTTCHHHHHH---HHHHS--TTTTCCH---------------------------------------------------
T ss_pred HHhhchHHHHHH---HHHhC--Chhhhhh---------------------------------------------------
Confidence 555555554443 22221 1111100
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
..|.+++.+ +.+...|...+..|. +....++.-+...+...+.+ ...+..+.+.|.+.-...++....
T Consensus 316 -----~~f~~~~~k-v~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~----~r~v~~~~~~~~l~l~~~yl~~v~ 383 (449)
T 1b89_A 316 -----GQFKDIITK-VANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH----TRAVNYFSKVKQLPLVKPYLRSVQ 383 (449)
T ss_dssp -----HHHHHHHHH-CSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCH----HHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred -----HHHHHHHhc-hhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCc----HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 122222222 556777777777776 33444455444444322223 455677788888888888887777
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 823 ESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 823 ~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
..+...-.++++ ..|...++++.-..-++.
T Consensus 384 ~~n~~~vnealn---~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 384 NHNNKSVNESLN---NLFITEEDYQALRTSIDA 413 (449)
T ss_dssp TTCCHHHHHHHH---HHHHHTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHH---HHHHhhhhHHHHHHHHHH
Confidence 654333334444 448888887766665554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.9e-18 Score=180.62 Aligned_cols=262 Identities=10% Similarity=-0.023 Sum_probs=161.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 547 TPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIIN 626 (902)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (902)
+...+..+...+.+.|++++|...|+++++.. +.+..+|..+...|...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34456677777777777777777777777643 3356777777777777777777777777777653 445667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 048778 627 GLCQRGRFKEAEMLLFKMFDLGVSPN-----------HITYSILVRAHASTGRLDHAFKIVSFMVANGCQ-LNSNVYSAL 694 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l 694 (902)
+|...|++++|+..++++.+.. |+ ...+..+...+...|++++|...++++.+.... ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 7777777777777777776532 22 122233455666666666666666666653211 145566666
Q ss_pred HHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 048778 695 LAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRA 774 (902)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 774 (902)
...+...| ++++|.+.++++++..|.+..+|..++..|...
T Consensus 220 ~~~~~~~g---------------------------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 260 (365)
T 4eqf_A 220 GVLFHLSG---------------------------------------EFNRAIDAFNAALTVRPEDYSLWNRLGATLANG 260 (365)
T ss_dssp HHHHHHHT---------------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHCC---------------------------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 66666666 666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-------------CHHHHHHHHHH
Q 048778 775 GRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-------------SFESHCTVIQG 839 (902)
Q Consensus 775 g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-------------~~~~~~~l~~~ 839 (902)
|++++|+..|+++++. .|+... ..++.+|...|++++|...++++++. .| +...|..++.+
T Consensus 261 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~ 336 (365)
T 4eqf_A 261 DRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIA 336 (365)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHH
Confidence 6666666666666663 343332 66666666666666666666666642 11 13455566666
Q ss_pred HHhcCCHHHHHHHHHH
Q 048778 840 LQSEGRNKQAKNLVSD 855 (902)
Q Consensus 840 l~~~g~~~~A~~~~~~ 855 (902)
+...|+.+.|....++
T Consensus 337 ~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 337 LSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHTCHHHHHHHHTT
T ss_pred HHHcCcHHHHHHHHHh
Confidence 6666666666555544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=178.37 Aligned_cols=272 Identities=12% Similarity=0.016 Sum_probs=220.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
+...+..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44558888999999999999999999999874 6678899999999999999999999999999864 556899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 662 AHASTGRLDHAFKIVSFMVANGCQLNSN-VYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 662 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
+|...|++++|...++++.+. .|+.. .+..+. + ....+...+..+...
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~------~-----------------------~~~~~~~l~~~~~~~ 190 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKK------G-----------------------SPGLTRRMSKSPVDS 190 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHCC------------------------------------------------CC
T ss_pred HHHccccHHHHHHHHHHHHHh--CccchHHHhhhc------c-----------------------chHHHHHHHHHHhhh
Confidence 999999999999999999873 33221 111110 0 001111223334445
Q ss_pred ccHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHH
Q 048778 741 MDVEHAFRLRDRIESCGGS--TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLE 816 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~ 816 (902)
|++++|.+.++++++.+|. ++.++..++..|...|++++|+..|+++++. .|+... ..++.+|...|++++|+.
T Consensus 191 g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5999999999999999988 8999999999999999999999999999985 455444 999999999999999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------CcchhHHHHHHHHhcCCcHhHH
Q 048778 817 FMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI-----------EEKAAVLPYIEFLLTGDELGKS 884 (902)
Q Consensus 817 ~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a 884 (902)
.++++++. .| +...+..++.+|...|++++|+..++++++..+. .+...|..+..++...|+.+.+
T Consensus 269 ~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 269 AYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 99999985 45 4688999999999999999999999999866422 1356788999999999999998
Q ss_pred HHHHHH
Q 048778 885 IDLLNL 890 (902)
Q Consensus 885 ~~~l~~ 890 (902)
.++.++
T Consensus 347 ~~~~~~ 352 (365)
T 4eqf_A 347 QAANLG 352 (365)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 887664
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-16 Score=174.57 Aligned_cols=347 Identities=9% Similarity=-0.049 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCH
Q 048778 513 EATITALADGHCKNGKTGEALMIFERMVQN-----T--DLKTPHVLNSFLDVLCK--ENKLKEEYAMFGKILKFGLVPSV 583 (902)
Q Consensus 513 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p~~ 583 (902)
..+|..+...|...|++++|...+++..+. + ......++..+..++.. .+++++|...|++.++.. +-+.
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~ 172 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNP 172 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCH
Confidence 345555555555556666655555554331 0 01123344444444433 345677777777776532 1134
Q ss_pred HHHHHHHHH---HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048778 584 VTYTILVDG---LFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ----RGRFKEAEMLLFKMFDLGVSPNHITY 656 (902)
Q Consensus 584 ~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~ 656 (902)
..+..+..+ +...++.++|++.+++..+.. +.+..++..+...+.. .|++++|.+.+++..... +.+...+
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 444444443 234566677777777776653 4455555555544443 356677888887777653 4566777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSK 735 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (902)
..+...|...|++++|...++++.+. .| +..++..+...|...+..... ........
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~--------------------~~~~~~~~ 308 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMN--------------------LRENGMYG 308 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHH--------------------C------C
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhh--------------------HHHHHHHH
Confidence 77888888888888888888887763 34 455666666555443300000 00000001
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHH-HHHccCCh
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIG-CYCKERKY 811 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~-~~~~~g~~ 811 (902)
.....+..++|...++++.+.+|.+..++..++..|...|++++|++.|+++++..+.+.... ..++. .+...|++
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCH
Confidence 111223678999999999999999999999999999999999999999999998654444322 33333 34578999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHH
Q 048778 812 DDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 891 (902)
++|+..++++++. .|+..... +..+.+..++++.++..+ .+...|..++..+...|++++|++.+++.
T Consensus 389 ~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 389 DKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSKNG-ADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999984 56543221 223455666677665543 34567888999999999999999999998
Q ss_pred HhcCc
Q 048778 892 DQVHY 896 (902)
Q Consensus 892 ~~~~~ 896 (902)
.+.|.
T Consensus 457 Le~~~ 461 (472)
T 4g1t_A 457 LESGS 461 (472)
T ss_dssp -----
T ss_pred HhcCC
Confidence 88764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.5e-17 Score=170.21 Aligned_cols=274 Identities=11% Similarity=-0.012 Sum_probs=198.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAS 665 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 665 (902)
+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 4455556666677777777777666643 4455666667777777777777777777776643 4456677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhh-hh-hhhhhcc
Q 048778 666 TGRLDHAFKIVSFMVANGCQLN-SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERS-SK-NFLREMD 742 (902)
Q Consensus 666 ~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 742 (902)
.|++++|.+.++++.+. .|+ ...+..+...+.. ....... +. .+...|+
T Consensus 102 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~ 153 (327)
T 3cv0_A 102 EHNANAALASLRAWLLS--QPQYEQLGSVNLQADVD--------------------------IDDLNVQSEDFFFAAPNE 153 (327)
T ss_dssp TTCHHHHHHHHHHHHHT--STTTTTC----------------------------------------------CCTTSHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHH--------------------------HHHHHHHHHhHHHHHccc
Confidence 77777777777777753 232 2222221110000 0000011 11 2445569
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHH
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNL 820 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~ 820 (902)
+++|.+.++++++..|.+..++..++..|...|++++|+..++++.+.. |+... ..++.+|...|++++|...+++
T Consensus 154 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999854 54433 8999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------cchhHHHHHHHHhcCCcHhHHHHHHH
Q 048778 821 ILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE-----------EKAAVLPYIEFLLTGDELGKSIDLLN 889 (902)
Q Consensus 821 ~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~l~ 889 (902)
+.+.. ..+...+..++.++...|++++|+..++++++..... +...|..++..+.+.|++++|..+++
T Consensus 232 a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 232 ALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99753 3356889999999999999999999999998775442 46678889999999999999999887
Q ss_pred HHH
Q 048778 890 LID 892 (902)
Q Consensus 890 ~~~ 892 (902)
+..
T Consensus 311 ~~l 313 (327)
T 3cv0_A 311 QNV 313 (327)
T ss_dssp CCS
T ss_pred HHH
Confidence 543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=172.77 Aligned_cols=286 Identities=11% Similarity=0.105 Sum_probs=137.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 048778 420 RMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANG 499 (902)
Q Consensus 420 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (902)
+.|++++|.+.++++ +++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 566788888888877 23348888888888888888888888542 467788888888888899999988
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048778 500 FFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGL 579 (902)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (902)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77766664 4457778888889999999888887774 266678999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 580 VPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSIL 659 (902)
Q Consensus 580 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 659 (902)
..|..++.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|...... +..+......+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 36889999999999999999999988 2788999999999999999999655443 23344445678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhh
Q 048778 660 VRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLR 739 (902)
Q Consensus 660 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (902)
+..|.+.|++++|+.+++..+... +-...+|+-|.-.|.+-.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~------------------------------------- 255 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK------------------------------------- 255 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-------------------------------------
Confidence 899999999999999999988532 335678888877777765
Q ss_pred hccHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 740 EMDVEHAFRLRDRIESCGG-----STTDFYNFLVVELCRAGRIVEADRIM 784 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~ 784 (902)
.+++.+.++.|..-+...| .+...|.-+...|.+.++++.|....
T Consensus 256 p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 256 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 2266666666665444434 46778999999999999999998743
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-18 Score=193.69 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhc--CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHH
Q 048778 231 DTHICTSLVLGHCRGNDLKEAFKVFDVMSKE--ASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTV 308 (902)
Q Consensus 231 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 308 (902)
-..+||+||++||+.|++++|.++|++|.+. .|+.||++|||+||+|||+.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 3456677777777777777777776665421 15666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048778 309 LIKALCDISLT-DKALSLFDEMVVKRCKPNAHTYTVLIDRLCR 350 (902)
Q Consensus 309 li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 350 (902)
+|+++|+.|+. ++|.++|++|.+.|+.||..+|++++.+..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 66666666653 5666666666666666666666666655444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-16 Score=168.09 Aligned_cols=265 Identities=11% Similarity=-0.024 Sum_probs=207.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 548 PHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIING 627 (902)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 627 (902)
...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445666777777888888888888877643 3366777778888888888888888888887763 5567778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048778 628 LCQRGRFKEAEMLLFKMFDLGVSPNHITYSIL--------------VR-AHASTGRLDHAFKIVSFMVANGCQLNSNVYS 692 (902)
Q Consensus 628 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 692 (902)
+...|++++|...++++.+.. +.+...+..+ .. .+...|++++|...++++.+. .+.+...+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM-NPNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH-STTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh-CCCCHHHHH
Confidence 888888888888888887653 2222333332 22 367789999999999999875 234678888
Q ss_pred HHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048778 693 ALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELC 772 (902)
Q Consensus 693 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 772 (902)
.+...+...| ++++|.+.++++++..|.+..++..++..+.
T Consensus 177 ~la~~~~~~~---------------------------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (327)
T 3cv0_A 177 SLGVLYNLSN---------------------------------------NYDSAAANLRRAVELRPDDAQLWNKLGATLA 217 (327)
T ss_dssp HHHHHHHHTT---------------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---------------------------------------cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 8888888888 9999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHH
Q 048778 773 RAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-----------SFESHCTVIQG 839 (902)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~ 839 (902)
..|++++|+..++++.+.. |+... ..++.+|...|++++|...++++.+..... +...+..++.+
T Consensus 218 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 9999999999999998854 54333 889999999999999999999998642121 35788899999
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 048778 840 LQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 840 l~~~g~~~~A~~~~~~~~ 857 (902)
+.+.|+.++|..++++++
T Consensus 296 ~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHTTCHHHHHHHTTCCS
T ss_pred HHhcCCHHHHHHHHHHHH
Confidence 999999999999987643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.2e-18 Score=190.24 Aligned_cols=119 Identities=11% Similarity=0.046 Sum_probs=87.5
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 267 NSVTFTTLIHGLCEVGRLDEAFSLKDEMCE---KGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTV 343 (902)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 343 (902)
-..|||++|++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 445788888888888888888888877653 36777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCH-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 048778 344 LIDRLCREGKI-DEANGMCGKMLQDGHFPGVVTYNVLINGYCK 385 (902)
Q Consensus 344 li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 385 (902)
+|.++|+.|+. ++|.++|++|.+.|+.||.++|++++.+..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 77777777763 5677777777777777777777777765544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.8e-16 Score=159.55 Aligned_cols=269 Identities=9% Similarity=0.004 Sum_probs=155.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048778 524 CKNGKTGEALMIFERMVQNTDLKTP--HVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIAL 601 (902)
Q Consensus 524 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 601 (902)
...|++..|+..++..... .|+. .....+...|...|++++|...++.. -+|+..++..+...+...|+.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 3455555555555544321 1221 23333455566666666666544331 23455566666666666666777
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 602 AMSMIEVMKLAGCPP-NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMV 680 (902)
Q Consensus 602 A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 680 (902)
|++.++++...+..| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|.+.++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777666654333 444555556666677777777766665 3556666667777777777777777777776
Q ss_pred HCCCCCCHHHHH---HHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC
Q 048778 681 ANGCQLNSNVYS---ALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG 757 (902)
Q Consensus 681 ~~g~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 757 (902)
+. .|+....+ .++..+...| ++++|..+|+++++..
T Consensus 158 ~~--~p~~~~~~l~~a~~~l~~~~~---------------------------------------~~~eA~~~~~~~l~~~ 196 (291)
T 3mkr_A 158 DQ--DEDATLTQLATAWVSLAAGGE---------------------------------------KLQDAYYIFQEMADKC 196 (291)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHCTT---------------------------------------HHHHHHHHHHHHHHHS
T ss_pred hh--CcCcHHHHHHHHHHHHHhCch---------------------------------------HHHHHHHHHHHHHHhC
Confidence 53 34432111 1222222233 7777777777777777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHH-HHHHHHHHHHcCCCCCHHHHH
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDD-CLEFMNLILESGFVPSFESHC 834 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~ 834 (902)
|.++..|+.++.++.+.|++++|++.++++++. .|+... ..++.++...|+.++ +.++++++.+. .|+...
T Consensus 197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~-- 270 (291)
T 3mkr_A 197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF-- 270 (291)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH--
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH--
Confidence 777777777777777777777777777777763 344433 666666777777654 45677776653 454322
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 048778 835 TVIQGLQSEGRNKQAKNL 852 (902)
Q Consensus 835 ~l~~~l~~~g~~~~A~~~ 852 (902)
+.+...+.+.++++..-
T Consensus 271 -~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 271 -IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 22234455555555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-15 Score=166.12 Aligned_cols=366 Identities=13% Similarity=0.021 Sum_probs=156.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-----C---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----C
Q 048778 337 NAHTYTVLIDRLCREGKIDEANGMCGKMLQD-----G---HFPGVVTYNVLINGYCKQGRIIAAFELLALMEKR-----T 403 (902)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~ 403 (902)
....|+.|...+...|++++|.+.|++..+. + -.....+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456666767777777777777776665431 0 1113455666666666666666666666554321 0
Q ss_pred -CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048778 404 -CK-PNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTF 481 (902)
Q Consensus 404 -~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 481 (902)
.. ....++..+..++...| .+++++|.+.|++..+.. +.+...+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~---------------------------------~~~y~~A~~~~~kal~~~-p~~~~~~ 175 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCG---------------------------------GNQNERAKVCFEKALEKK-PKNPEFT 175 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHC---------------------------------TTHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHc---------------------------------cccHHHHHHHHHHHHHhC-CCCHHHH
Confidence 00 01223333322222221 223444444444444332 1222233
Q ss_pred HHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 048778 482 TSIIDG---LCKLGKPELANGFFGLMVKKGISPDEATITALADGHCK----NGKTGEALMIFERMVQNTDLKTPHVLNSF 554 (902)
Q Consensus 482 ~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 554 (902)
..+... +...++.++|++.+++..+.. +.+..++..+...+.. .++.++|...+++..... +.+..++..+
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~l 253 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSA 253 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHH
Confidence 222222 122334444444444444432 1133333333222222 233444444444444321 1233344444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHCCCC
Q 048778 555 LDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFR-------------------AGNIALAMSMIEVMKLAGCP 615 (902)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~~~~ 615 (902)
...|...|++++|...+++..+.. +.+..++..+...|.. .+..+.|...+++..+.. +
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~ 331 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-D 331 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-C
Confidence 444555555555555555444421 1123333333333321 122445555555555432 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048778 616 PNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNH--ITYSILVR-AHASTGRLDHAFKIVSFMVANGCQLNSNVYS 692 (902)
Q Consensus 616 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 692 (902)
.+..++..+...+...|++++|+..|++.++....+.. ..+..+.. .+...|++++|+..+++.++ +.|+.....
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~ 409 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKE 409 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHH
Confidence 33344555566666666666666666666554321111 11222222 12345566666666666554 333321110
Q ss_pred HHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048778 693 ALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELC 772 (902)
Q Consensus 693 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 772 (902)
+ ....+.+++++.++.+|.++.+|..|+..|.
T Consensus 410 ---------~---------------------------------------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~ 441 (472)
T 4g1t_A 410 ---------K---------------------------------------MKDKLQKIAKMRLSKNGADSEALHVLAFLQE 441 (472)
T ss_dssp ---------H---------------------------------------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHH
T ss_pred ---------H---------------------------------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 1 3334444555555555666666666666666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 048778 773 RAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~ 790 (902)
..|++++|++.|+++++.
T Consensus 442 ~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 442 LNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHCC------------
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 666666666666666553
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.6e-16 Score=157.90 Aligned_cols=254 Identities=14% Similarity=0.090 Sum_probs=178.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 048778 488 LCKLGKPELANGFFGLMVKKGISPDE--ATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLK 565 (902)
Q Consensus 488 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 565 (902)
....|++..|+..++..... .|+. .....+..+|...|+++.|+..++. ...|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34456666666665554332 2222 2334455667777777776665533 13345566667777777777777
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 566 EEYAMFGKILKFGLVP-SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKM 644 (902)
Q Consensus 566 ~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 644 (902)
+|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777777655434 455666667778888888888888776 456777888888888888888888888888
Q ss_pred HHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCC
Q 048778 645 FDLGVSPNHITY---SILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSS 721 (902)
Q Consensus 645 ~~~g~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (902)
.+.. |+.... ..++..+...|++++|..+++++++. .+.+...++.+..++.+.|
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g------------------- 214 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQG------------------- 214 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTT-------------------
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcC-------------------
Confidence 7653 443211 22334444568889999999988875 4557788888888888888
Q ss_pred CCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCchHh
Q 048778 722 RLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVE-ADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~ 797 (902)
++++|.+.|+++++.+|.++.++..++..+...|+.++ +.++++++++ ..|+..
T Consensus 215 --------------------~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 215 --------------------RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp --------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred --------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 89999999999998889899999999988888988865 5688888887 456655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-15 Score=146.84 Aligned_cols=196 Identities=15% Similarity=0.041 Sum_probs=115.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcc
Q 048778 650 SPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDD 728 (902)
Q Consensus 650 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (902)
+++...+..+...+.+.|++++|...+++.++. .| +...+..+...+.+.|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g-------------------------- 53 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLG-------------------------- 53 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTT--------------------------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC--------------------------
Confidence 345555666666666666666666666666652 33 4555666666666666
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCchHh
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRA-----------GRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
++++|...++++++.+|.+..++..++..+... |++++|+..++++++ ..|+..
T Consensus 54 -------------~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~ 118 (217)
T 2pl2_A 54 -------------LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYA 118 (217)
T ss_dssp -------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred -------------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccH
Confidence 666677667666666666666666666666666 777777777777766 334433
Q ss_pred H--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHH
Q 048778 798 I--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFL 875 (902)
Q Consensus 798 ~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (902)
. ..++.+|...|++++|+..++++++.. .+...+..++.+|...|++++|+..++++++..+. +...+..++..+
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~ 195 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASAL 195 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 3 666666777777777777777776654 45566666667777777777777777776665432 334555666666
Q ss_pred hcCCcHhHHHHHHHHH
Q 048778 876 LTGDELGKSIDLLNLI 891 (902)
Q Consensus 876 ~~~g~~~~a~~~l~~~ 891 (902)
...|++++|++.+++.
T Consensus 196 ~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 196 LLKGKAEEAARAAALE 211 (217)
T ss_dssp TC--------------
T ss_pred HHccCHHHHHHHHHHH
Confidence 6777777777666654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=147.09 Aligned_cols=225 Identities=9% Similarity=0.056 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHH
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLG--VSPN----HITY 656 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~ 656 (902)
...|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|+..++++.+.. ..++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456667777777888888888888777765 667777778888888888888888888776532 1122 4677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKN 736 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (902)
..+..++...|++++|...++++.+. .|+.. .+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~---------------------------------- 119 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLR---------------------------------- 119 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHH----------------------------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHh----------------------------------
Confidence 78888888888888888888888763 44432 233444
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDC 814 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A 814 (902)
++++|...++++...+|.+...+..++..+...|++++|+..++++++.. |+... ..++.+|...|++++|
T Consensus 120 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A 192 (258)
T 3uq3_A 120 -----NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEA 192 (258)
T ss_dssp -----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred -----HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHH
Confidence 88889999998888888888888899999999999999999999988844 44333 7888888899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 815 LEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
...++++++.. ..+...+..++.++...|++++|...++++++..
T Consensus 193 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 193 IADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999888752 2346788888889999999999999999887654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-14 Score=141.73 Aligned_cols=207 Identities=14% Similarity=0.117 Sum_probs=147.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 048778 615 PPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSA 693 (902)
Q Consensus 615 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ 693 (902)
+++...+..+...+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..+++.++. .| +...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 4455666777777777777777777777777654 455677777777777777777777777777763 34 4556666
Q ss_pred HHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 048778 694 LLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCR 773 (902)
Q Consensus 694 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 773 (902)
+...+...+... .......|++++|...++++++.+|.+..+|..++..|..
T Consensus 79 lg~~~~~~~~~~----------------------------~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 79 LSEAYVALYRQA----------------------------EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130 (217)
T ss_dssp HHHHHHHHHHTC----------------------------SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh----------------------------hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 666666651000 0001112399999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 048778 774 AGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKN 851 (902)
Q Consensus 774 ~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~ 851 (902)
.|++++|+..|+++++.. .+... ..++.+|...|++++|+..++++++. .| +...+..++.++...|++++|+.
T Consensus 131 ~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 131 LGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------
T ss_pred cCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999966 34444 89999999999999999999999985 46 46888899999999999999999
Q ss_pred HHHHH
Q 048778 852 LVSDL 856 (902)
Q Consensus 852 ~~~~~ 856 (902)
.+++.
T Consensus 207 ~~~~~ 211 (217)
T 2pl2_A 207 AAALE 211 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 99874
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-14 Score=155.25 Aligned_cols=193 Identities=15% Similarity=0.038 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048778 585 TYTILVDGLFRAG---NIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQR----GRFKEAEMLLFKMFDLGVSPNHITYS 657 (902)
Q Consensus 585 ~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~ 657 (902)
.+..+...|...| +.++|++.|++..+.| +++...+..+...|... +++++|+.+|++.. . -+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 5555566666666 6666666666666665 44555444555555433 46666666666655 2 2344444
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhh
Q 048778 658 ILVRA-H--ASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSS 734 (902)
Q Consensus 658 ~l~~~-~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (902)
.+... + ...+++++|++++++..+.| +...+..|...|. .|.. .
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g------------------~----------- 299 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW------------------V----------- 299 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS------------------S-----------
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC------------------C-----------
Confidence 55554 2 34566666666666666544 3444555555554 2200 0
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHc---
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCR----AGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCK--- 807 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~--- 807 (902)
..+.++|.+.|+++. +.++.++..|+..|.. ..++++|...|+++.+.|. ......|+.+|..
T Consensus 300 -----~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~G~g 369 (452)
T 3e4b_A 300 -----PADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ--NSADFAIAQLFSQGKG 369 (452)
T ss_dssp -----CCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC--TTHHHHHHHHHHSCTT
T ss_pred -----CCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh--HHHHHHHHHHHHhCCC
Confidence 006666666666665 5556666666665555 2366666666666665431 1111555555543
Q ss_pred -cCChHHHHHHHHHHHHcC
Q 048778 808 -ERKYDDCLEFMNLILESG 825 (902)
Q Consensus 808 -~g~~~~A~~~~~~~~~~~ 825 (902)
..+.++|..+++.+.+.|
T Consensus 370 ~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 370 TKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp BCCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHCC
Confidence 346666666666666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-14 Score=156.69 Aligned_cols=375 Identities=11% Similarity=0.011 Sum_probs=238.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 449 LVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKP---ELANGFFGLMVKKGISPDEATITALADGHCK 525 (902)
Q Consensus 449 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 525 (902)
+...+.+.|++++|.++|++..+.| +..++..|...|...|+. ++|...|++..+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 3444555666666666666665544 222333444444555555 6666666666543 33344444443444
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 048778 526 NG-----KTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLK---EEYAMFGKILKFGLVPSVVTYTILVDGLFRAG 597 (902)
Q Consensus 526 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 597 (902)
.+ +.++|...|++..+.+. +..+..|...|...+..+ ++.+.+......| +...+..+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 33 56677777777776543 235556666666555433 3444444444443 3445666777777777
Q ss_pred CH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 048778 598 NI----ALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRG---RFKEAEMLLFKMFDLGVSPNHITYSILVRAHAST---- 666 (902)
Q Consensus 598 ~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---- 666 (902)
.+ +.+..+++.... + .|+ .+..|...|...| +.++|+..|++..+.| +++...+..+...|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~-~-~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALN-T-TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp CGGGGHHHHHHHHHHHTT-T-CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred CcccCHHHHHHHHHHHHc-C-CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 44 444444444433 2 344 7788888999999 9999999999999988 67777767788888655
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccH
Q 048778 667 GRLDHAFKIVSFMVANGCQLNSNVYSALLAGLV---SSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDV 743 (902)
Q Consensus 667 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (902)
+++++|+++|++.. +-+...+..|...|. ..+ +.
T Consensus 231 ~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~---------------------------------------d~ 267 (452)
T 3e4b_A 231 PDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELG---------------------------------------DV 267 (452)
T ss_dssp CCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGC---------------------------------------CH
T ss_pred CCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCC---------------------------------------CH
Confidence 79999999999986 335566666766632 333 99
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHc----cCChHH
Q 048778 744 EHAFRLRDRIESCGGSTTDFYNFLVVELCRAG-----RIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCK----ERKYDD 813 (902)
Q Consensus 744 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~----~g~~~~ 813 (902)
++|.+.|+++.+. .++.++..|+..|. .| ++++|+..|+++. .| +... ..|+..|.. ..++++
T Consensus 268 ~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~ 340 (452)
T 3e4b_A 268 EQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQK 340 (452)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHH
Confidence 9999999999975 48889999999988 55 9999999999986 22 2223 788888876 449999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHH
Q 048778 814 CLEFMNLILESGFVPSFESHCTVIQGLQS----EGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLN 889 (902)
Q Consensus 814 A~~~~~~~~~~~~~p~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~ 889 (902)
|..++++..+.|. ......++.+|.. ..+.++|..+++++.+.+.. +.......+......++..+|..+.+
T Consensus 341 A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~ 416 (452)
T 3e4b_A 341 ALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQ 416 (452)
T ss_dssp HHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998662 3466677777764 45899999999999888753 33333333444455677888888888
Q ss_pred HHHhcC
Q 048778 890 LIDQVH 895 (902)
Q Consensus 890 ~~~~~~ 895 (902)
+..+..
T Consensus 417 ~~~~~~ 422 (452)
T 3e4b_A 417 QELAAR 422 (452)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 876653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.6e-14 Score=140.88 Aligned_cols=220 Identities=10% Similarity=0.049 Sum_probs=111.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 048778 551 LNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAG--CPPN----VHTYTVI 624 (902)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~l 624 (902)
+..+...+...|++++|...|+++.+.. .+...|..+...+...|++++|++.++++.+.. ..++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 344444444455555555555555555444321 0011 2444555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 048778 625 INGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKA 704 (902)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 704 (902)
...+...|++++|...++++.+. .|+. ..+.+.|++++|...++++.+. .+.+...+..+...+...|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 153 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV-NPEKAEEARLEGKEYFTKS-- 153 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc-CcchHHHHHHHHHHHHHhc--
Confidence 55555555555555555555542 2332 2233445555555555555542 1123344555555555555
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIM 784 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 784 (902)
++++|...++++++..|.+..+|..++..|...|++++|+..+
T Consensus 154 -------------------------------------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 154 -------------------------------------DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------------------------CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5666666666666555555666666666666666666666666
Q ss_pred HHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 785 KDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 785 ~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
+++++.. |+... ..++.+|...|++++|...++++.+
T Consensus 197 ~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 197 NKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6665532 33222 5555566666666666666665554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=9.1e-14 Score=147.91 Aligned_cols=245 Identities=11% Similarity=-0.001 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGR-FKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
...|..+...+.+.|++++|++.++++++.. +-+...|+.+..++...|+ +++|+..++++++.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4557777777888888888888888888764 5567788888888888886 899999988888764 456788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 662 AHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 662 ~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
++...|++++|+..++++++. .| +...|..+..++...|
T Consensus 175 ~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g-------------------------------------- 214 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFK-------------------------------------- 214 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT--------------------------------------
T ss_pred HHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcC--------------------------------------
Confidence 888889999999999888874 44 6778888888888888
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHcCCCchHhH--HHHHHHHHccC--C
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCR-AGRIVEA-----DRIMKDIMKSGVFPAKAI--TSIIGCYCKER--K 810 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g--~ 810 (902)
++++|+..++++++.+|.+..+|+.++.+|.. .|..++| ++.|+++++ +.|+... ..++.++...| +
T Consensus 215 -~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~ 291 (382)
T 2h6f_A 215 -LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSK 291 (382)
T ss_dssp -CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGG
T ss_pred -ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccc
Confidence 88889999999999888899999999988888 5555777 488888888 4566554 77788888877 6
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC--------C-HHHHHHHHHHH-HhCCCCCcchhHHHHHHHHh
Q 048778 811 YDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEG--------R-NKQAKNLVSDL-FRYNGIEEKAAVLPYIEFLL 876 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g--------~-~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 876 (902)
+++|++.++++ + ..| +...+..++++|.+.| + .++|+++++++ .+.++. ....|..++..+.
T Consensus 292 ~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 292 YPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ 364 (382)
T ss_dssp CHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred hHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 88888888887 3 345 4577888888888764 2 58899999887 555422 3445655555543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-13 Score=141.97 Aligned_cols=233 Identities=10% Similarity=0.037 Sum_probs=168.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 048778 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPN--HITYSILVRAH 663 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~ 663 (902)
+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..++++.+..-.++ ...|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445666777788888888888877753 33445677777788888888888888888876321122 33477788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccH
Q 048778 664 ASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDV 743 (902)
Q Consensus 664 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (902)
...|++++|++.++++.+. .+.+..++..+...+...| ++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~---------------------------------------~~ 124 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDR-DTTRLDMYGQIGSYFYNKG---------------------------------------NF 124 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHH-STTCTHHHHHHHHHHHHTT---------------------------------------CH
T ss_pred HHcccHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHcc---------------------------------------CH
Confidence 8888888888888888774 2335567777777777777 88
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCC---hHHHHHHH
Q 048778 744 EHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERK---YDDCLEFM 818 (902)
Q Consensus 744 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~---~~~A~~~~ 818 (902)
++|.+.++++++..|.+...|..++..+...+++++|++.|+++++. .|+... ..++.++...|+ +++|...+
T Consensus 125 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 202 (272)
T 3u4t_A 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYY 202 (272)
T ss_dssp HHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHH
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHH
Confidence 88888888888888888888888884444455888888888888874 455433 677777777777 77888888
Q ss_pred HHHHHcC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 819 NLILESG-FVPS------FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 819 ~~~~~~~-~~p~------~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
+++.+.. -.|+ ...|..++.+|...|++++|+..++++++..+
T Consensus 203 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 203 EKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 8877421 1233 25777788888888999999999998877753
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=141.76 Aligned_cols=234 Identities=12% Similarity=0.001 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 048778 619 HTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN--SNVYSALLA 696 (902)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~l~~ 696 (902)
..+......+...|++++|+..++++.+.. +.+...+..+..+|...|++++|+..++++++.+..++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345567788899999999999999999864 44566889999999999999999999999998432222 334778888
Q ss_pred HHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 048778 697 GLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGR 776 (902)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 776 (902)
.+...| ++++|.+.++++++.+|.+..+|..++..|...|+
T Consensus 83 ~~~~~~---------------------------------------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 123 (272)
T 3u4t_A 83 ILMKKG---------------------------------------QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123 (272)
T ss_dssp HHHHTT---------------------------------------CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHcc---------------------------------------cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC
Confidence 888888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC---HHHHH
Q 048778 777 IVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPS-FESHCTVIQGLQSEGR---NKQAK 850 (902)
Q Consensus 777 ~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~---~~~A~ 850 (902)
+++|+..++++++. .|+... ..++..+...+++++|...++++.+. .|+ ...+..++.++...|+ +++|+
T Consensus 124 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 199 (272)
T 3u4t_A 124 FPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAK 199 (272)
T ss_dssp HHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTH
T ss_pred HHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHH
Confidence 99999999999884 455544 77773444556999999999999985 454 6888889999998898 88899
Q ss_pred HHHHHHHhCC-CCCc------chhHHHHHHHHhcCCcHhHHHHHHHHHHhcCc
Q 048778 851 NLVSDLFRYN-GIEE------KAAVLPYIEFLLTGDELGKSIDLLNLIDQVHY 896 (902)
Q Consensus 851 ~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~ 896 (902)
..++++++.. ..|+ ...+..++..+...|++++|++.++++.+...
T Consensus 200 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 200 PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 9999987663 1222 24677788889999999999999999987653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-12 Score=131.84 Aligned_cols=225 Identities=11% Similarity=-0.038 Sum_probs=165.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ----RGRFKEAEMLLFKMFDLGVSPNHITYS 657 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 657 (902)
+..++..+...|...|++++|++.|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5666777777788888888888888888773 355667777777777 888888888888887764 667777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcCCccccccccCCCCCCCCCcCCcch
Q 048778 658 ILVRAHAS----TGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVS----SNKASGVLSISTSCHSDAGSSRLEHDDDD 729 (902)
Q Consensus 658 ~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (902)
.+...|.. .+++++|++.+++..+.+ +...+..+...|.. .+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~--------------------------- 128 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR--------------------------- 128 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC---------------------------
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc---------------------------
Confidence 77788877 788888888888887753 55666677777766 55
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHhHHHHHHHH
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCR----AGRIVEADRIMKDIMKSGVFPAKAITSIIGCY 805 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~ 805 (902)
++++|.+.|+++.+.+ +..++..++..|.. .+++++|+..|+++.+.+ +......++.+|
T Consensus 129 ------------~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~ 192 (273)
T 1ouv_A 129 ------------DFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMY 192 (273)
T ss_dssp ------------CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Confidence 7888888888887764 56677777777777 778888888888877743 222227777777
Q ss_pred Hc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 048778 806 CK----ERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQS----EGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 806 ~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~ 861 (902)
.. .+++++|+.+++++.+.+ | ...+..++.+|.. .|++++|+.+++++++.+.
T Consensus 193 ~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 193 HHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 77 788888888888877753 2 5566677777777 7788888888888776653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-12 Score=131.50 Aligned_cols=224 Identities=12% Similarity=-0.023 Sum_probs=151.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 048778 547 TPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFR----AGNIALAMSMIEVMKLAGCPPNVHTYT 622 (902)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 622 (902)
++.++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556666667777777777777777777662 345666667777777 777777777777777654 566666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 623 VIINGLCQ----RGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAS----TGRLDHAFKIVSFMVANGCQLNSNVYSAL 694 (902)
Q Consensus 623 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 694 (902)
.+...|.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|+.++++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777777654 56667777777777 777777777777777643 44555555
Q ss_pred HHHHHh----cCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048778 695 LAGLVS----SNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVE 770 (902)
Q Consensus 695 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 770 (902)
...|.. .+ +.++|.+.|+++.+. .++.++..++..
T Consensus 153 g~~~~~~~~~~~---------------------------------------~~~~A~~~~~~a~~~--~~~~a~~~lg~~ 191 (273)
T 1ouv_A 153 GSLYDAGRGTPK---------------------------------------DLKKALASYDKACDL--KDSPGCFNAGNM 191 (273)
T ss_dssp HHHHHHTSSSCC---------------------------------------CHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHcCCCCCC---------------------------------------CHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 555555 33 777777777777765 345666777777
Q ss_pred HHh----cCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHc----cCChHHHHHHHHHHHHcC
Q 048778 771 LCR----AGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCK----ERKYDDCLEFMNLILESG 825 (902)
Q Consensus 771 ~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 825 (902)
|.. .+++++|++.|+++.+.+ |......++.+|.. .+++++|.++++++.+.+
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777 777777777777777643 33323666777776 777777777777776653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-13 Score=143.99 Aligned_cols=245 Identities=11% Similarity=0.087 Sum_probs=205.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 548 PHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGN-IALAMSMIEVMKLAGCPPNVHTYTVIIN 626 (902)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (902)
...|..+...+...|++++|+..++++++.. +-+...|+.+...+...|+ +++|+..|+++++.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3456777788888999999999999988753 2357889999999999997 999999999999875 557889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh-cCCc
Q 048778 627 GLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVS-SNKA 704 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~-~~~~ 704 (902)
++...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..++++++. .| +...|+.+...+.. .|
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~-- 249 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTG-- 249 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC--
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcC--
Confidence 9999999999999999999875 567899999999999999999999999999984 45 67889889888888 44
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHH-----HHHHHHHHhcCCCCHHHHHHHHHHHHhcC--CH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHA-----FRLRDRIESCGGSTTDFYNFLVVELCRAG--RI 777 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~ 777 (902)
..++| ++.|+++++.+|.+..+|+.++..+...| ++
T Consensus 250 -------------------------------------~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 250 -------------------------------------YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKY 292 (382)
T ss_dssp -------------------------------------SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGC
T ss_pred -------------------------------------cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccch
Confidence 33444 69999999999999999999999999988 68
Q ss_pred HHHHHHHHHHHHcCCCchHhH--HHHHHHHHccC---------ChHHHHHHHHHH-HHcCCCCCH-HHHHHHHHHHH
Q 048778 778 VEADRIMKDIMKSGVFPAKAI--TSIIGCYCKER---------KYDDCLEFMNLI-LESGFVPSF-ESHCTVIQGLQ 841 (902)
Q Consensus 778 ~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~~~p~~-~~~~~l~~~l~ 841 (902)
++|++.++++ + ..|+... ..++++|.+.| .+++|+++++++ .+ +.|.. ..|..++..+.
T Consensus 293 ~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 293 PNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 9999999888 4 4565544 88999998874 359999999999 66 36754 66666666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-13 Score=139.25 Aligned_cols=243 Identities=12% Similarity=-0.052 Sum_probs=151.3
Q ss_pred cCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 596 AGNIALAMSMIEVMKLAGC---PPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHA 672 (902)
Q Consensus 596 ~g~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 672 (902)
.|++++|++.|+++.+... +.+..++..+...+...|++++|...++++.+.. +.+...|..++.++...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3556666666666665421 1134456666666777777777777777766543 34566677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHH
Q 048778 673 FKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDR 752 (902)
Q Consensus 673 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 752 (902)
...++++++. .+.+...+..+...+...| ++++|.+.+++
T Consensus 97 ~~~~~~al~~-~~~~~~~~~~la~~~~~~g---------------------------------------~~~~A~~~~~~ 136 (275)
T 1xnf_A 97 YEAFDSVLEL-DPTYNYAHLNRGIALYYGG---------------------------------------RDKLAQDDLLA 136 (275)
T ss_dssp HHHHHHHHHH-CTTCTHHHHHHHHHHHHTT---------------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHhc-CccccHHHHHHHHHHHHhc---------------------------------------cHHHHHHHHHH
Confidence 7777777663 1224566666666666666 77777777777
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCC--
Q 048778 753 IESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPS-- 829 (902)
Q Consensus 753 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-- 829 (902)
+++..|.+...+..+. .+...|++++|+..++++.... |+... ..++..+...++.++|...++++.+. .|+
T Consensus 137 a~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~ 211 (275)
T 1xnf_A 137 FYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKS--DKEQWGWNIVEFYLGNISEQTLMERLKADATD--NTSLA 211 (275)
T ss_dssp HHHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHS--CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCS--HHHHH
T ss_pred HHHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--ccccc
Confidence 7777666654444333 3355577777777777666632 33333 55666667777777777777776543 221
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHH
Q 048778 830 ---FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLL 888 (902)
Q Consensus 830 ---~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l 888 (902)
...+..++.++.+.|++++|...++++++.. |+. +.....++...|++++|++.+
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 4667777778888888888888888876654 222 223355666777777777665
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-13 Score=139.50 Aligned_cols=243 Identities=13% Similarity=-0.072 Sum_probs=174.9
Q ss_pred cCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 561 ENKLKEEYAMFGKILKFGLV---PSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEA 637 (902)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 637 (902)
.|++++|...++++.+.... .+..+|..+...+...|++++|...|+++.+.. +.+..+|..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677777777777764221 135567777888888888888888888888764 45677888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCC
Q 048778 638 EMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSD 717 (902)
Q Consensus 638 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 717 (902)
+..++++.+.. +.+...+..++.+|.+.|++++|...++++.+. .|+.......+..+...|
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~--------------- 158 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKL--------------- 158 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhc---------------
Confidence 88888888753 445778888888888888888888888888873 454443333444444445
Q ss_pred CCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--
Q 048778 718 AGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA-- 795 (902)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-- 795 (902)
++++|...++++....|++...+. ++..+...++.++|+..++++.+. .|+
T Consensus 159 ------------------------~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~ 211 (275)
T 1xnf_A 159 ------------------------DEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATD--NTSLA 211 (275)
T ss_dssp ------------------------CHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS--HHHHH
T ss_pred ------------------------CHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc--ccccc
Confidence 888999999888888777766655 666777778888888888888653 232
Q ss_pred ---HhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 796 ---KAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLV 853 (902)
Q Consensus 796 ---~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~ 853 (902)
... ..++.+|...|++++|...++++.+. .|+. +...+.++...|++++|++.+
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 122 77888899999999999999998874 4532 223355677888888888776
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-12 Score=132.07 Aligned_cols=199 Identities=15% Similarity=0.092 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 618 VHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAG 697 (902)
Q Consensus 618 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 697 (902)
...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567777777888888888888888877653 4467777778888888888888888888877642 3356677777777
Q ss_pred HHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcC
Q 048778 698 LVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIES--CGGSTTDFYNFLVVELCRAG 775 (902)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g 775 (902)
+...| ++++|.+.++++++ ..|.+...+..++..|...|
T Consensus 115 ~~~~g---------------------------------------~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 115 LYEQK---------------------------------------RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp HHHTT---------------------------------------CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHh---------------------------------------HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC
Confidence 77777 88888888888877 55667777888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 776 RIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLV 853 (902)
Q Consensus 776 ~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~ 853 (902)
++++|+..++++.+.. |+... ..++.+|...|++++|..+++++.+.. ..+...+..++.++...|+.++|..++
T Consensus 156 ~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 232 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYG 232 (252)
T ss_dssp CHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 8888888888887743 33322 777777888888888888888877642 234566777777777888888888888
Q ss_pred HHHHhCC
Q 048778 854 SDLFRYN 860 (902)
Q Consensus 854 ~~~~~~~ 860 (902)
+++.+..
T Consensus 233 ~~~~~~~ 239 (252)
T 2ho1_A 233 LQLKRLY 239 (252)
T ss_dssp HHHHHHC
T ss_pred HHHHHHC
Confidence 8876654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-12 Score=131.48 Aligned_cols=198 Identities=13% Similarity=-0.019 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048778 584 VTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAH 663 (902)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 663 (902)
..|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 445555556666666666666666665542 3455566666666666666666666666666543 33556666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhcc
Q 048778 664 ASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMD 742 (902)
Q Consensus 664 ~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (902)
...|++++|.++++++.+.+..| +...+..+...+...| +
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------------------------------------~ 156 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK---------------------------------------K 156 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT---------------------------------------C
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC---------------------------------------C
Confidence 66777777777776666522334 3445555666666666 7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHH
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNL 820 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~ 820 (902)
+++|.+.++++++..|.+...+..++..|...|++++|...++++.+.. |+... ..++.+|...|++++|.+++++
T Consensus 157 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 7777777777777666667777777777777777777777777776633 33222 6666667777777777777777
Q ss_pred HHHc
Q 048778 821 ILES 824 (902)
Q Consensus 821 ~~~~ 824 (902)
+.+.
T Consensus 235 ~~~~ 238 (252)
T 2ho1_A 235 LKRL 238 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-12 Score=128.97 Aligned_cols=201 Identities=8% Similarity=-0.045 Sum_probs=143.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 617 NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLA 696 (902)
Q Consensus 617 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 696 (902)
+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++.+. .+.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChHHHHHHHH
Confidence 44567777777888888888888888877653 445777777778888888888888888877764 2335666777777
Q ss_pred HHHhc-CCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Q 048778 697 GLVSS-NKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIES--CGGSTTDFYNFLVVELCR 773 (902)
Q Consensus 697 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 773 (902)
.+... | ++++|.+.++++++ ..|.+...+..++..+..
T Consensus 85 ~~~~~~~---------------------------------------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 125 (225)
T 2vq2_A 85 FLCGRLN---------------------------------------RPAESMAYFDKALADPTYPTPYIANLNKGICSAK 125 (225)
T ss_dssp HHHTTTC---------------------------------------CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHhcC---------------------------------------cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH
Confidence 77777 6 78888888888777 335556777778888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 774 AGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKN 851 (902)
Q Consensus 774 ~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~ 851 (902)
.|++++|+..++++.+.. |+... ..++.+|...|++++|..+++++.+.....+...+..++..+...|+.++|..
T Consensus 126 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 203 (225)
T 2vq2_A 126 QGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203 (225)
T ss_dssp TTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 888888888888877743 43332 77777778888888888888877764211345566666667777788888887
Q ss_pred HHHHHHhCC
Q 048778 852 LVSDLFRYN 860 (902)
Q Consensus 852 ~~~~~~~~~ 860 (902)
+++.+.+..
T Consensus 204 ~~~~~~~~~ 212 (225)
T 2vq2_A 204 YEAQLQANF 212 (225)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 777765443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-13 Score=134.86 Aligned_cols=197 Identities=12% Similarity=0.087 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 620 TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLV 699 (902)
Q Consensus 620 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 699 (902)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL-DSSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcchHHHHHHHHHHH
Confidence 44444555555555555555555555432 334555555555556666666666666655543 1224455555555555
Q ss_pred hcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 700 SSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVE 779 (902)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 779 (902)
..| ++++|.+.++++++..|.+...+..++..+...|++++
T Consensus 103 ~~~---------------------------------------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 103 VKE---------------------------------------MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HTT---------------------------------------CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHH
T ss_pred Hhc---------------------------------------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 555 66666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 780 ADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 780 A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
|+..++++.+.. |+... ..++.+|...|++++|...++++.+.. ..+...+..++.++...|++++|...+++++
T Consensus 144 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 144 ALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 666666665532 32222 556666666666666666666665532 2234556666666666666666666666665
Q ss_pred hCC
Q 048778 858 RYN 860 (902)
Q Consensus 858 ~~~ 860 (902)
+..
T Consensus 221 ~~~ 223 (243)
T 2q7f_A 221 DIQ 223 (243)
T ss_dssp HHC
T ss_pred ccC
Confidence 544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-13 Score=133.92 Aligned_cols=199 Identities=15% Similarity=0.083 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 34456666667777777777777777777653 4466777777777777788888888877777653 446677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhc
Q 048778 662 AHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREM 741 (902)
Q Consensus 662 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (902)
.+...|++++|.+.++++.+.. +.+...+..+...+...|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~--------------------------------------- 139 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLE--------------------------------------- 139 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTS---------------------------------------
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc---------------------------------------
Confidence 8888888888888888777642 335666777777777777
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|...++++++..|.+...+..++..+...|++++|+..++++.+.. |+... ..++.+|...|++++|...++
T Consensus 140 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 140 QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88888888888888777788888888888888888888888888887743 33332 777788888888888888888
Q ss_pred HHHHc
Q 048778 820 LILES 824 (902)
Q Consensus 820 ~~~~~ 824 (902)
++.+.
T Consensus 218 ~~~~~ 222 (243)
T 2q7f_A 218 KAIDI 222 (243)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 88764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-12 Score=125.87 Aligned_cols=202 Identities=10% Similarity=-0.078 Sum_probs=149.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 35566677777777888888888887777653 4456677777778888888888888888877653 446777778888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhh
Q 048778 662 AHAST-GRLDHAFKIVSFMVANGCQLN-SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLR 739 (902)
Q Consensus 662 ~~~~~-g~~~~A~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (902)
.+... |++++|...++++.+.+..|+ ...+..+...+...|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------------- 127 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG------------------------------------- 127 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT-------------------------------------
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC-------------------------------------
Confidence 88888 888888888888876333343 456667777777777
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHH
Q 048778 740 EMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~ 818 (902)
++++|...++++++..|.+...+..++..+...|++++|...++++.+..+..+... ..+...+...|+.++|..++
T Consensus 128 --~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 128 --QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp --CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 888888888888888888888888888888888888888888888877443112222 66667777888888888888
Q ss_pred HHHHHc
Q 048778 819 NLILES 824 (902)
Q Consensus 819 ~~~~~~ 824 (902)
+.+.+.
T Consensus 206 ~~~~~~ 211 (225)
T 2vq2_A 206 AQLQAN 211 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-13 Score=147.55 Aligned_cols=269 Identities=12% Similarity=0.025 Sum_probs=195.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHH
Q 048778 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNV----HTYTVIINGLCQRGRFKEAEMLLFKMFDL----GV-SPNHITY 656 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~ 656 (902)
+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...|...|++++|+..+++..+. +- +.....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 4445566777788888888888777753 2233 35677777778888888888887777642 11 1234567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVAN----GCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYE 731 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (902)
..+...|...|++++|...++++.+. +-.+ ...++..+...+...|
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------------- 180 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG----------------------------- 180 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC-----------------------------
Confidence 77888888889999998888887753 1112 2345556666666666
Q ss_pred hhhhhhhhhcc-----------------HHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 732 RSSKNFLREMD-----------------VEHAFRLRDRIESCG------GSTTDFYNFLVVELCRAGRIVEADRIMKDIM 788 (902)
Q Consensus 732 ~~~~~~~~~~~-----------------~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (902)
+ +++|.+.++++++.. +....++..++..|...|++++|+..+++++
T Consensus 181 ----------~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 181 ----------KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp ----------HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6 889999888876652 3345688999999999999999999999997
Q ss_pred HcCCC---chH-h-H-HHHHHHHHccCChHHHHHHHHHHHHcC--C-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 789 KSGVF---PAK-A-I-TSIIGCYCKERKYDDCLEFMNLILESG--F-VP--SFESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 789 ~~~~~---p~~-~-~-~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
+.... +.. . . ..++.+|...|++++|..+++++.+.. . .+ ...++..++.++...|++++|..++++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 251 RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 63211 111 1 3 788999999999999999999988521 1 11 14778889999999999999999999987
Q ss_pred hCCCC-----CcchhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 858 RYNGI-----EEKAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 858 ~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
+.... .....+..++..+.+.|++++|.+.+++..+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 331 AIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 65221 11346777888899999999999999988764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-13 Score=146.37 Aligned_cols=294 Identities=11% Similarity=0.003 Sum_probs=195.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-
Q 048778 581 PSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPN----VHTYTVIINGLCQRGRFKEAEMLLFKMFDL----GVSP- 651 (902)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 651 (902)
.....+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++.... +-.|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 345556666677777788888888887777753 223 246677777788888888888887776532 2111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCC
Q 048778 652 NHITYSILVRAHASTGRLDHAFKIVSFMVANGC-QLN----SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHD 726 (902)
Q Consensus 652 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (902)
...++..+...|...|++++|...++++.+... .++ ..++..+...+...|+..+...... .
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~-------------~ 152 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQD-------------V 152 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC--------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccch-------------h
Confidence 145677788888888999999888888775210 011 3355666666666661000000000 0
Q ss_pred cchhhhhhhhhhhhccHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---Cch-H
Q 048778 727 DDDYERSSKNFLREMDVEHAFRLRDRIESCG------GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGV---FPA-K 796 (902)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~ 796 (902)
...... ....+++|.+.++++++.. +....++..++..|...|++++|+..++++++... .+. .
T Consensus 153 ~~~~~~------a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (406)
T 3sf4_A 153 GEFPEE------VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 226 (406)
T ss_dssp CCCCHH------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhhh------HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 000000 0002888888888876652 33356788999999999999999999999875321 111 1
Q ss_pred h-H-HHHHHHHHccCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-----
Q 048778 797 A-I-TSIIGCYCKERKYDDCLEFMNLILES----GFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE----- 864 (902)
Q Consensus 797 ~-~-~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~----- 864 (902)
. . ..++.+|...|++++|..+++++.+. +..+. ..++..++.++...|++++|...++++++......
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 306 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE 306 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 1 2 78889999999999999999998742 11111 46778899999999999999999999876522111
Q ss_pred chhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 865 KAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 865 ~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
...+..++..+...|++++|++.+++..+.
T Consensus 307 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 307 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 446777888899999999999999887653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-13 Score=147.52 Aligned_cols=291 Identities=14% Similarity=0.089 Sum_probs=171.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHH
Q 048778 551 LNSFLDVLCKENKLKEEYAMFGKILKFGLVPS----VVTYTILVDGLFRAGNIALAMSMIEVMKLA----GCPP-NVHTY 621 (902)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~ 621 (902)
+......+...|++++|...|+++.+... .+ ...|..+...|...|++++|...++++... +-.| ...++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 33444445555555555555555554321 12 234555555666666666666666654331 1111 12355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 048778 622 TVIINGLCQRGRFKEAEMLLFKMFDLGV-SPN----HITYSILVRAHASTGR--------------------LDHAFKIV 676 (902)
Q Consensus 622 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 676 (902)
..+...+...|++++|...+++..+..- .++ ..++..+...|...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5666666667777777766666653200 011 3356667777777777 77777777
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHH
Q 048778 677 SFMVAN----GCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRD 751 (902)
Q Consensus 677 ~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 751 (902)
++..+. +..+ ...++..+...+...| ++++|...++
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---------------------------------------~~~~A~~~~~ 211 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLG---------------------------------------NFRDAVIAHE 211 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---------------------------------------BHHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHcc---------------------------------------CHHHHHHHHH
Confidence 666532 1111 1234555555555555 8888888888
Q ss_pred HHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CchHh-H-HHHHHHHHccCChHHHHHHHH
Q 048778 752 RIESCGGST------TDFYNFLVVELCRAGRIVEADRIMKDIMKSGV----FPAKA-I-TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 752 ~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~-~-~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++..+.. ..++..++..|...|++++|+..++++.+... .+... . ..++.+|...|++++|..+++
T Consensus 212 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 212 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 877664221 23778888888888888888888888765211 11112 2 677888888888888888888
Q ss_pred HHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CC-cchhHHHHHHHHhcCCcH
Q 048778 820 LILES----GFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG----IE-EKAAVLPYIEFLLTGDEL 881 (902)
Q Consensus 820 ~~~~~----~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~ 881 (902)
++.+. +-.+. ..++..++.+|...|++++|...++++++... .+ ....+..+...+...|+.
T Consensus 292 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 87742 11111 35677788888888888888888888765421 11 133455566666665554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.5e-13 Score=145.35 Aligned_cols=268 Identities=15% Similarity=0.103 Sum_probs=170.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHH
Q 048778 554 FLDVLCKENKLKEEYAMFGKILKFGLVPSV----VTYTILVDGLFRAGNIALAMSMIEVMKLA----GC-PPNVHTYTVI 624 (902)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~l 624 (902)
+...+...|++++|...|+++++.... +. ..|..+...|...|++++|...++++.+. +. +....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344455555555555555555543211 21 34555566666666666666666655442 10 1123456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC
Q 048778 625 INGLCQRGRFKEAEMLLFKMFDL----G-VSPNHITYSILVRAHASTGR-----------------LDHAFKIVSFMVAN 682 (902)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~m~~~ 682 (902)
...|...|++++|...+++..+. + .+....++..+...|...|+ +++|.+.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66677777777777777666532 1 01124466677777777777 77777777766542
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC
Q 048778 683 ----GCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG 757 (902)
Q Consensus 683 ----g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 757 (902)
+..+ ...++..+...+...| ++++|.+.++++++..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g---------------------------------------~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLG---------------------------------------DFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTT---------------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcC---------------------------------------ChHHHHHHHHHHHHHH
Confidence 1111 1235555666666666 8888888888887765
Q ss_pred CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--c--h-HhH-HHHHHHHHccCChHHHHHHHHHHHHc-
Q 048778 758 GST------TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF--P--A-KAI-TSIIGCYCKERKYDDCLEFMNLILES- 824 (902)
Q Consensus 758 ~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p--~-~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~- 824 (902)
+.. ..++..++..|...|++++|+..++++++.... . . ... ..++.+|...|++++|..+++++++.
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 322 237888899999999999999999888763210 0 1 122 78888899999999999999988742
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 825 ---GFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 825 ---~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
+..+ ...++..++.+|...|++++|..+++++++...
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 1111 135778888999999999999999999876653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.7e-13 Score=140.56 Aligned_cols=290 Identities=11% Similarity=0.006 Sum_probs=193.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHH
Q 048778 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPN----VHTYTVIINGLCQRGRFKEAEMLLFKMFDL----GVSP-NHITY 656 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~ 656 (902)
+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +-.| ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344556677777777777777777653 223 346667777777788888888777776532 1111 24567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGC-QLN----SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYE 731 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (902)
..+...+...|++++|...+++..+... .++ ..++..+...+...|+..++...... .....
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~ 153 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDT-------------GEFPE 153 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC-----------------CCH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhh-------------hhhhh
Confidence 7788888888999998888888765210 112 23566666666666621110000000 00000
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CchH-h-H-H
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCG------GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGV---FPAK-A-I-T 799 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~-~-~-~ 799 (902)
-....+++|.+.++++++.. +....++..++..+...|++++|+..++++.+... .+.. . . .
T Consensus 154 ------~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (338)
T 3ro2_A 154 ------DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS 227 (338)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 00002888888888876542 33356788999999999999999999999875321 1111 1 2 7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CcchhHH
Q 048778 800 SIIGCYCKERKYDDCLEFMNLILES----GFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI-----EEKAAVL 869 (902)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~ 869 (902)
.++.+|...|++++|..+++++.+. +..+ ...++..++.++...|++++|...++++++.... .....+.
T Consensus 228 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 307 (338)
T 3ro2_A 228 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW 307 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 8889999999999999999998742 1111 1467788999999999999999999998765221 1133677
Q ss_pred HHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 870 PYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 870 ~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
.++..+.+.|++++|.+.+++..+..
T Consensus 308 ~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 308 SLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 88889999999999999999987653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-09 Score=124.25 Aligned_cols=218 Identities=8% Similarity=-0.001 Sum_probs=131.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 567 EYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAM-SMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMF 645 (902)
Q Consensus 567 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 645 (902)
+..+|++.+.. ++-+...|-..+.-+...|+.++|. ++|++.... ++.+...|...+......|++++|..+|++++
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44556555543 2335566666666666666666665 777776653 34455556666666666777777777777666
Q ss_pred HCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 048778 646 DLG---------VSPN------------HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKA 704 (902)
Q Consensus 646 ~~g---------~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~ 704 (902)
+.. -.|+ ...|...+....+.|+.+.|..+|.++++.-......+|...+..-.+.+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~-- 483 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS-- 483 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT--
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC--
Confidence 421 0121 23566666666677777777777777776401112233322222222222
Q ss_pred CCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 705 SGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIM 784 (902)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 784 (902)
++.+.|.++|+..++..|.++..|...+......|+.+.|..+|
T Consensus 484 ------------------------------------~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lf 527 (679)
T 4e6h_A 484 ------------------------------------KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLF 527 (679)
T ss_dssp ------------------------------------SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ------------------------------------CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 15777777877777777777777777777777777778888888
Q ss_pred HHHHHcCCCc-hHhH--HHHHHHHHccCChHHHHHHHHHHHHc
Q 048778 785 KDIMKSGVFP-AKAI--TSIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 785 ~~~~~~~~~p-~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
++++.....+ .... ...+..-...|+.+.+.++.+++.+.
T Consensus 528 eral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 528 ESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777644321 1111 55555556677777777777777764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-12 Score=122.49 Aligned_cols=167 Identities=8% Similarity=-0.063 Sum_probs=142.0
Q ss_pred chhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHc
Q 048778 728 DDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCK 807 (902)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~ 807 (902)
..|..++..+.+.|++++|++.|+++++.+|.++.+|..++..|.+.|++++|+..++++.............++..+..
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 34444555555555999999999999999999999999999999999999999999999998554333333888899999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHH
Q 048778 808 ERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDL 887 (902)
Q Consensus 808 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 887 (902)
.+++++|...++++.+.. ..+...+..++.++.+.|++++|++.++++++..+. +...|..++..+.+.|++++|++.
T Consensus 86 ~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998752 335688899999999999999999999999887643 466788999999999999999999
Q ss_pred HHHHHhcCc
Q 048778 888 LNLIDQVHY 896 (902)
Q Consensus 888 l~~~~~~~~ 896 (902)
+++..+...
T Consensus 164 ~~~al~~~p 172 (184)
T 3vtx_A 164 FKKALEKEE 172 (184)
T ss_dssp HHHHHHTTH
T ss_pred HHHHHhCCc
Confidence 999887653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-12 Score=144.42 Aligned_cols=220 Identities=14% Similarity=-0.018 Sum_probs=183.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048778 598 NIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRF-KEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIV 676 (902)
Q Consensus 598 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 676 (902)
.+++++..+++..... +.+...+..+...+...|++ ++|+..|++..+.. +.+...|..+..+|...|++++|.+.+
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3667777777766543 45778889999999999999 99999999998764 456889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc
Q 048778 677 SFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC 756 (902)
Q Consensus 677 ~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 756 (902)
+++++ +.|+...+..+...+...+. +....+.|++++|.+.|+++++.
T Consensus 161 ~~al~--~~p~~~~~~~lg~~~~~~~~------------------------------~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 161 SGALT--HCKNKVSLQNLSMVLRQLQT------------------------------DSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp HHHHT--TCCCHHHHHHHHHHHTTCCC------------------------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--hCCCHHHHHHHHHHHHHhcc------------------------------CChhhhhhhHHHHHHHHHHHHHh
Confidence 99997 46777888888888877610 00111223999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCc---hHhH--HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 757 GGSTTDFYNFLVVELCRA--------GRIVEADRIMKDIMKSGVFP---AKAI--TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 757 ~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p---~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
+|.+..+|..++.+|... |++++|+..|+++++. .| +... ..++.+|...|++++|...++++.+
T Consensus 209 ~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 209 DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999984 56 4444 8999999999999999999999998
Q ss_pred cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 824 SGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 824 ~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
. .|+ ...+..++.++...|++++|++.+++
T Consensus 287 l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 287 L--DPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred h--CCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5 454 57888999999999999999987655
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=9e-12 Score=118.77 Aligned_cols=166 Identities=18% Similarity=0.109 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
+..+|..+...|.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|+..++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34455555555555555555555555555542 3344455555555555555555555555555432 333444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhc
Q 048778 662 AHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREM 741 (902)
Q Consensus 662 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (902)
.+...++++.|...+.+..+. .+.+...+..+...+.+.|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g--------------------------------------- 121 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMG--------------------------------------- 121 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT---------------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhC---------------------------------------
Confidence 555555555555555555542 1223444445555555555
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|++.|+++++.+|.++.+|..++..|.+.|++++|++.|+++++
T Consensus 122 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 122 EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555555555555555555555555555555555555555555555555
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-09 Score=123.15 Aligned_cols=230 Identities=11% Similarity=0.015 Sum_probs=164.4
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048778 531 EALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEY-AMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVM 609 (902)
Q Consensus 531 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (902)
.+..+|++.+.. .+..+..|...+..+...|+.++|. .+|++.... ++.+...|-..+...-+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345567766654 3346677777777777778888886 888887763 3446666777777778888888888888887
Q ss_pred HHCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-
Q 048778 610 KLAG---------CPPN------------VHTYTVIINGLCQRGRFKEAEMLLFKMFDL-GVSPNHITYSILVRAHAST- 666 (902)
Q Consensus 610 ~~~~---------~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~- 666 (902)
.+.. ..|+ ..+|...++...+.|..+.|..+|..+.+. + ......|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 7531 0132 236777788888889999999999999875 2 22334444444444444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHH
Q 048778 667 GRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHA 746 (902)
Q Consensus 667 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 746 (902)
++.+.|.++|+..++. .+.+...|...+......| +.+.|
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~---------------------------------------~~~~A 523 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVN---------------------------------------EESQV 523 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHT---------------------------------------CHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCC---------------------------------------CHHHH
Confidence 4589999999999885 4446667777777777777 99999
Q ss_pred HHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHH
Q 048778 747 FRLRDRIESCGG---STTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCY 805 (902)
Q Consensus 747 ~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~ 805 (902)
..+|++++...| .....|...+..-.+.|+.+.+..+.+++.+.. |+... ..+++=|
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 999999998875 255788888888899999999999999999854 54433 4444333
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-11 Score=134.31 Aligned_cols=229 Identities=7% Similarity=-0.059 Sum_probs=171.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHHHHH
Q 048778 589 LVDGLFRAGNIALAMSMIEVMKLA----GCPP-NVHTYTVIINGLCQRGRFKEAEMLLFKMFDL--GVSP----NHITYS 657 (902)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~ 657 (902)
....+...|++++|+..|++..+. +-.+ ...++..+...|...|++++|+..+++..+. .... ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556678889999999999998763 1111 2357888889999999999999999988742 1111 145788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhh
Q 048778 658 ILVRAHASTGRLDHAFKIVSFMVANGCQ-LN----SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYER 732 (902)
Q Consensus 658 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (902)
.+..+|...|++++|...+++.++.... ++ ..++..+...|...|
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g------------------------------ 238 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS------------------------------ 238 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------------------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC------------------------------
Confidence 8899999999999999999998753111 11 236666777777777
Q ss_pred hhhhhhhhccHHHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CchHhH--HHH
Q 048778 733 SSKNFLREMDVEHAFRLRDRIES-----CG-GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGV---FPAKAI--TSI 801 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~--~~l 801 (902)
++++|.+.++++++ .+ |....++..++..|...|++++|...++++++... .|.... ..+
T Consensus 239 ---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 309 (383)
T 3ulq_A 239 ---------QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309 (383)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999988 45 66678899999999999999999999999876321 122222 567
Q ss_pred HHHHHccCC---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 802 IGCYCKERK---YDDCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 802 ~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
+..|...|+ +++|+.++++. +..|+ ...+..++.+|...|++++|..+++++++.
T Consensus 310 ~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 310 KSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888888888 77777777765 22343 367778889999999999999999988654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-12 Score=138.13 Aligned_cols=267 Identities=14% Similarity=0.093 Sum_probs=174.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHH
Q 048778 554 FLDVLCKENKLKEEYAMFGKILKFGLVPS----VVTYTILVDGLFRAGNIALAMSMIEVMKLA----GCPP-NVHTYTVI 624 (902)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l 624 (902)
....+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++..+. +..| ...++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344455556666666666665553211 2 245556666666666777666666665431 1111 23456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 048778 625 INGLCQRGRFKEAEMLLFKMFDLGV-SPN----HITYSILVRAHASTGR--------------------LDHAFKIVSFM 679 (902)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m 679 (902)
...+...|++++|...+++..+..- .++ ..++..+...+...|+ +++|.+.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777777777777777777653210 112 3366777777778888 78887777776
Q ss_pred HHC----CCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHH
Q 048778 680 VAN----GCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIE 754 (902)
Q Consensus 680 ~~~----g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 754 (902)
.+. +..+ ...++..+...+...| ++++|.+.+++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------------------~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLG---------------------------------------NFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHT---------------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhC---------------------------------------CHHHHHHHHHHHH
Confidence 542 1111 1234555555666666 8899998888887
Q ss_pred hcCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---c-h-HhH-HHHHHHHHccCChHHHHHHHHHHH
Q 048778 755 SCGGS------TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF---P-A-KAI-TSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 755 ~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p-~-~~~-~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
+..+. ...++..++..+...|++++|+..++++.+.... + . ... ..++.+|...|++++|..+++++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 211 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 66421 1337889999999999999999999998753211 1 1 112 778899999999999999999887
Q ss_pred Hc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 823 ES----GFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 823 ~~----~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
+. +-.+ ...++..++.++.+.|++++|...++++++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 52 1111 13577889999999999999999999987664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-11 Score=124.29 Aligned_cols=218 Identities=11% Similarity=0.030 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 048778 635 KEAEMLLFKMFDLGVSPNHITYSILVRAHA-------STGRL-------DHAFKIVSFMVANGCQL-NSNVYSALLAGLV 699 (902)
Q Consensus 635 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~ 699 (902)
++|...|++++... +.+...|..++..+. +.|++ ++|..++++.++. +.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 67778888887653 556777777777765 35776 8999999999973 355 5568888888888
Q ss_pred hcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhcCCHH
Q 048778 700 SSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTD-FYNFLVVELCRAGRIV 778 (902)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 778 (902)
+.| ++++|.++|+++++..|.+.. +|..++..+.+.|+++
T Consensus 111 ~~~---------------------------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 151 (308)
T 2ond_A 111 SRM---------------------------------------KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 151 (308)
T ss_dssp HTT---------------------------------------CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHH
T ss_pred hcC---------------------------------------CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHH
Confidence 888 999999999999998888876 8999999999999999
Q ss_pred HHHHHHHHHHHcCCCchHhHHHHHHHHH---ccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 779 EADRIMKDIMKSGVFPAKAITSIIGCYC---KERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVS 854 (902)
Q Consensus 779 ~A~~~~~~~~~~~~~p~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~ 854 (902)
+|..+|+++++.. |+.....+..++. ..|++++|..+++++++. .| +...|..++..+.+.|+.++|..+|+
T Consensus 152 ~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 227 (308)
T 2ond_A 152 SGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999854 4333322222332 379999999999999875 34 56888899999999999999999999
Q ss_pred HHHhCC-CCC--cchhHHHHHHHHhcCCcHhHHHHHHHHHHhcCcc
Q 048778 855 DLFRYN-GIE--EKAAVLPYIEFLLTGDELGKSIDLLNLIDQVHYR 897 (902)
Q Consensus 855 ~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~~ 897 (902)
++++.. ..| ....|..++..+.+.|+.++|..+++++.+....
T Consensus 228 ~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 228 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 998863 344 3567888888888999999999999998876543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-11 Score=131.66 Aligned_cols=229 Identities=8% Similarity=-0.063 Sum_probs=176.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---CC-CHHHHH
Q 048778 624 IINGLCQRGRFKEAEMLLFKMFDLG-VSPN----HITYSILVRAHASTGRLDHAFKIVSFMVAN--GC---QL-NSNVYS 692 (902)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~---~~-~~~~~~ 692 (902)
....+...|++++|+..+++..+.- -.++ ..++..+...|...|++++|...+++..+. .. .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 5667788999999999999998631 0122 467889999999999999999999998863 11 11 134666
Q ss_pred HHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCC--C----CHHHHHH
Q 048778 693 ALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGG--S----TTDFYNF 766 (902)
Q Consensus 693 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~----~~~~~~~ 766 (902)
.+...|...| ++++|.+.++++++..+ + ...++..
T Consensus 189 ~lg~~~~~~g---------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 229 (383)
T 3ulq_A 189 LFATNFLDLK---------------------------------------QYEDAISHFQKAYSMAEAEKQPQLMGRTLYN 229 (383)
T ss_dssp HHHHHHHHTT---------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhc---------------------------------------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 7777777777 99999999999987742 2 2357899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcC---CCCC-HHHHHHH
Q 048778 767 LVVELCRAGRIVEADRIMKDIMKS----GVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESG---FVPS-FESHCTV 836 (902)
Q Consensus 767 l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~-~~~~~~l 836 (902)
++..|...|++++|++.++++++. +..|.... ..++.+|...|++++|..+++++.+.. -.|. ...+..+
T Consensus 230 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 309 (383)
T 3ulq_A 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999862 22244433 899999999999999999999988521 0222 2345678
Q ss_pred HHHHHhcCC---HHHHHHHHHHHHhCCCCCc-chhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 837 IQGLQSEGR---NKQAKNLVSDLFRYNGIEE-KAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 837 ~~~l~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
+.++...|+ .++|+.++++. +..+. ...+..++..+.+.|++++|.+.+++..+-
T Consensus 310 ~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 310 KSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 889999999 89999998884 33322 345667888999999999999999988653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-12 Score=141.67 Aligned_cols=211 Identities=10% Similarity=-0.067 Sum_probs=181.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCcccc
Q 048778 633 RFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRL-DHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSI 710 (902)
Q Consensus 633 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~ 710 (902)
.+++++..+++..... +.+...+..+..++...|++ ++|++.++++++. .| +...|..+...|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g-------- 151 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKG-------- 151 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcC--------
Confidence 3667777787776543 45788999999999999999 9999999999984 44 5788888998898888
Q ss_pred ccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---------CCHHHHH
Q 048778 711 STSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRA---------GRIVEAD 781 (902)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~ 781 (902)
++++|.+.|+++++.+|. ..++..++..|... |++++|+
T Consensus 152 -------------------------------~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~ 199 (474)
T 4abn_A 152 -------------------------------DVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSV 199 (474)
T ss_dssp -------------------------------CHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHH
T ss_pred -------------------------------CHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHH
Confidence 999999999999999876 79999999999999 9999999
Q ss_pred HHHHHHHHcCCCchHhH--HHHHHHHHcc--------CChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHH
Q 048778 782 RIMKDIMKSGVFPAKAI--TSIIGCYCKE--------RKYDDCLEFMNLILESGFVP----SFESHCTVIQGLQSEGRNK 847 (902)
Q Consensus 782 ~~~~~~~~~~~~p~~~~--~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~l~~~g~~~ 847 (902)
+.|+++++. .|+... ..++.+|... |++++|+..++++++. .| +...|..++.+|...|+++
T Consensus 200 ~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~ 275 (474)
T 4abn_A 200 RQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYG 275 (474)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHH
Confidence 999999994 465544 8899999988 9999999999999985 45 5689999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHH
Q 048778 848 QAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 848 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 891 (902)
+|+..++++++..+. +...+..+...+...|++++|++.+.++
T Consensus 276 ~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 276 EALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999887644 4556788889999999999998765443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-10 Score=121.65 Aligned_cols=216 Identities=12% Similarity=0.056 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 600 ALAMSMIEVMKLAGCPPNVHTYTVIINGLC-------QRGRF-------KEAEMLLFKMFDLGVSPNHITYSILVRAHAS 665 (902)
Q Consensus 600 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 665 (902)
++|..+|++++... +.+...|..++..+. +.|++ ++|...|++.++.--+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 34445555554431 334444444444443 23443 5555555555542012234455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccH
Q 048778 666 TGRLDHAFKIVSFMVANGCQLN-SN-VYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDV 743 (902)
Q Consensus 666 ~g~~~~A~~~~~~m~~~g~~~~-~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (902)
.|++++|..+|+++++ +.|+ .. +|..++..+.+.| ++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~---------------------------------------~~ 150 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAE---------------------------------------GI 150 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHH---------------------------------------CH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhc---------------------------------------CH
Confidence 5555555555555554 2332 22 4555554444444 55
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHH
Q 048778 744 EHAFRLRDRIESCGGSTTDFYNFLVVELC-RAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNL 820 (902)
Q Consensus 744 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~ 820 (902)
++|..+|+++++.+|.+...|...+.... ..|++++|..+|+++++. .|+... ..++..+...|++++|..++++
T Consensus 151 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 151 KSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp HHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555555555555555444443333322 245555555555555552 233222 4555555555555555555555
Q ss_pred HHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 821 ILESG-FVPS--FESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 821 ~~~~~-~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
+++.. +.|+ ...|..++..+.+.|+.++|..+++++++.
T Consensus 229 al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 229 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55531 2332 244555555555556666666555555444
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-12 Score=133.18 Aligned_cols=236 Identities=13% Similarity=0.075 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLA-------GCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDL------GV 649 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 649 (902)
..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...++++.+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456677777777888888888888777662 22334456777888888888888888888887643 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCC
Q 048778 650 -SPNHITYSILVRAHASTGRLDHAFKIVSFMVAN------GCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSS 721 (902)
Q Consensus 650 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (902)
+.....+..+...|...|++++|...++++.+. +..| ....+..+...+...|
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~------------------- 167 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG------------------- 167 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-------------------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-------------------
Confidence 223567888888999999999999999988763 2222 3456667777777777
Q ss_pred CCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--
Q 048778 722 RLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC--------GGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG-- 791 (902)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 791 (902)
++++|.+.++++++. .|....++..++..|...|++++|++.++++++..
T Consensus 168 --------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 168 --------------------KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999887 45567789999999999999999999999998631
Q ss_pred -----CCchHhH--------HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 792 -----VFPAKAI--------TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 792 -----~~p~~~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
..+.... ..+...+...+.+.+|...++..... .| ...++..++.+|.+.|++++|+.++++++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp HHHC------CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1111100 22333445566677777777776643 34 34777788888888888888888888876
Q ss_pred hC
Q 048778 858 RY 859 (902)
Q Consensus 858 ~~ 859 (902)
+.
T Consensus 306 ~l 307 (311)
T 3nf1_A 306 RS 307 (311)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-11 Score=128.75 Aligned_cols=203 Identities=16% Similarity=0.115 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcC
Q 048778 653 HITYSILVRAHASTGRLDHAFKIVSFMVAN-------GCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEH 725 (902)
Q Consensus 653 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (902)
..++..+...+...|++++|..+++++.+. ........+..+...+...|
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g----------------------- 83 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN----------------------- 83 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-----------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC-----------------------
Confidence 567778888888888888888888888762 12223456777777787877
Q ss_pred CcchhhhhhhhhhhhccHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C
Q 048778 726 DDDDYERSSKNFLREMDVEHAFRLRDRIESC--------GGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS------G 791 (902)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 791 (902)
++++|...++++++. .+....++..++..|...|++++|+..++++++. +
T Consensus 84 ----------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 147 (311)
T 3nf1_A 84 ----------------KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147 (311)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred ----------------CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999998876 2555778999999999999999999999999874 2
Q ss_pred CCchHhH--HHHHHHHHccCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--
Q 048778 792 VFPAKAI--TSIIGCYCKERKYDDCLEFMNLILES------GFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYN-- 860 (902)
Q Consensus 792 ~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~-- 860 (902)
..|.... ..++.+|...|++++|..+++++.+. +..|. ...+..++.++...|++++|+.+++++++..
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2344443 88899999999999999999999863 22333 3678889999999999999999999987631
Q ss_pred ----------------------------------------------CCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 861 ----------------------------------------------GIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 861 ----------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
.......+..++..+.+.|++++|++.+++..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1223456778889999999999999999988754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=8.8e-12 Score=143.40 Aligned_cols=155 Identities=12% Similarity=0.058 Sum_probs=137.5
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
..+.+.|++++|++.|+++++.+|.+..+|..|+.+|.+.|++++|++.|+++++ +.|+... ..++.+|...|+++
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~~l~~~g~~~ 94 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQDVQ 94 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 3333333999999999999999999999999999999999999999999999999 5576655 99999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHH
Q 048778 813 DCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 813 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 891 (902)
+|++.++++++. .|+ ...|..++.+|.+.|++++|++.|+++++..+. +...+..++..+...|+|++|++.++++
T Consensus 95 ~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 95 GALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 999999999985 564 589999999999999999999999999888643 4567889999999999999999999887
Q ss_pred Hhc
Q 048778 892 DQV 894 (902)
Q Consensus 892 ~~~ 894 (902)
.+.
T Consensus 172 l~l 174 (723)
T 4gyw_A 172 VSI 174 (723)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-10 Score=123.77 Aligned_cols=229 Identities=9% Similarity=0.003 Sum_probs=164.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---C-CHHHH
Q 048778 588 ILVDGLFRAGNIALAMSMIEVMKLAG-CPPN----VHTYTVIINGLCQRGRFKEAEMLLFKMFDL--GVS---P-NHITY 656 (902)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p-~~~~~ 656 (902)
.....+...|++++|+..|+++.+.- -.++ ..++..+...|...|++++|+..+++..+. ... + ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34455678899999999999887631 0122 347788888899999999999999888742 111 1 24577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVAN----GCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYE 731 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (902)
..+..+|...|++++|.+.+++.++. +..+ ...++..+...|...|
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~----------------------------- 236 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG----------------------------- 236 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----------------------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-----------------------------
Confidence 88899999999999999999888752 1111 1235556666666666
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---chHhH--HHH
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIES-----CGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF---PAKAI--TSI 801 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~~--~~l 801 (902)
++++|.+.++++++ .+|....++..++..|.+.|++++|...++++++.... |.... ..+
T Consensus 237 ----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 306 (378)
T 3q15_A 237 ----------DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFL 306 (378)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 89999999988887 55666788888999999999999999999888764321 22222 566
Q ss_pred HHHHHccCC---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 802 IGCYCKERK---YDDCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 802 ~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
...|...|+ +.+|+.++++. +..|+ ...+..++..|...|++++|..+++++++
T Consensus 307 ~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 307 QAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666777777 77777777662 22333 35667788888888888888888888754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.7e-10 Score=120.10 Aligned_cols=228 Identities=7% Similarity=-0.113 Sum_probs=174.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---CC-CHHH
Q 048778 622 TVIINGLCQRGRFKEAEMLLFKMFDLG-VSPN----HITYSILVRAHASTGRLDHAFKIVSFMVAN--GC---QL-NSNV 690 (902)
Q Consensus 622 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~---~~-~~~~ 690 (902)
......+...|++++|+..+++..+.. -.++ ..++..+..+|...|++++|...+++..+. .. .+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 344556778999999999999998531 1133 457888999999999999999999998763 11 11 1346
Q ss_pred HHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC------CCCHHHH
Q 048778 691 YSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG------GSTTDFY 764 (902)
Q Consensus 691 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~ 764 (902)
+..+...|...| ++++|.+.++++++.. +....++
T Consensus 185 ~~~lg~~y~~~~---------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 225 (378)
T 3q15_A 185 LFVIAGNYDDFK---------------------------------------HYDKALPHLEAALELAMDIQNDRFIAISL 225 (378)
T ss_dssp HHHHHHHHHHTT---------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhC---------------------------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777777777 9999999999988763 1224578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCC---CCC-HHHH
Q 048778 765 NFLVVELCRAGRIVEADRIMKDIMK-----SGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGF---VPS-FESH 833 (902)
Q Consensus 765 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~ 833 (902)
..++..|...|++++|++.++++++ .. |.... ..++.+|.+.|++++|..++++..+..- .|. ...+
T Consensus 226 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 226 LNIANSYDRSGDDQMAVEHFQKAAKVSREKVP--DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999999999999999999986 33 33333 8999999999999999999999986321 222 2456
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCc-chhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 834 CTVIQGLQSEGR---NKQAKNLVSDLFRYNGIEE-KAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 834 ~~l~~~l~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
..+...+...|+ .++|+.++++ .+..++ ...+..++..+.+.|++++|.+.+++..+
T Consensus 304 ~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 304 LFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 667778888888 8999998887 232222 34566788889999999999999988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-11 Score=137.81 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|++.|+++++.+|.+..+|..|+..|.+.|++++|++.|+++++ +.|+... ..++.+|...|++++|++.++
T Consensus 58 ~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 58 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555554 2333332 445555555555555555555
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 820 LILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 820 ~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
++++. .|+ ...+..++.+|...|++++|.+.+++++
T Consensus 136 ~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 136 TALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 55542 332 3444555555555555555555555443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.8e-10 Score=110.36 Aligned_cols=194 Identities=10% Similarity=0.015 Sum_probs=128.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 048778 617 NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALL 695 (902)
Q Consensus 617 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~ 695 (902)
|...+......+...|++++|+..|++..+..-+++...+..+..++...|++++|++.+++.++. .| +...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 455666666777777777777777777776542256666666777777777777777777777763 44 345666666
Q ss_pred HHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCH-------HHHHHHH
Q 048778 696 AGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTT-------DFYNFLV 768 (902)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~ 768 (902)
..+...| ++++|.+.++++++..|.+. ..|..++
T Consensus 84 ~~~~~~~---------------------------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 124 (228)
T 4i17_A 84 AAYRDMK---------------------------------------NNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEG 124 (228)
T ss_dssp HHHHHTT---------------------------------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcc---------------------------------------cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh
Confidence 6777776 78888888888887777777 5577778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCch--HhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 048778 769 VELCRAGRIVEADRIMKDIMKSGVFPA--KAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEG 844 (902)
Q Consensus 769 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g 844 (902)
..+...|++++|++.|+++++ ..|+ ... ..++.+|... +..+++++...+ ..+...|... .....|
T Consensus 125 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~--~~~~~~ 194 (228)
T 4i17_A 125 QKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGVLFYNN-----GADVLRKATPLA-SSNKEKYASE--KAKADA 194 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHH--HHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHH--HHHHHH
Confidence 888888888888888888877 4566 433 6667777543 334445554432 2223333222 233456
Q ss_pred CHHHHHHHHHHHHhCCC
Q 048778 845 RNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 845 ~~~~A~~~~~~~~~~~~ 861 (902)
.+++|+..++++++..+
T Consensus 195 ~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 195 AFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhcCC
Confidence 68888888888877653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.2e-10 Score=110.74 Aligned_cols=208 Identities=11% Similarity=-0.024 Sum_probs=154.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 581 PSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILV 660 (902)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 660 (902)
.|...+......+...|++++|+..|++..+...+++...+..+..++...|++++|+..+++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35677778888888999999999999988886533777888888889999999999999999998764 34577888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHH-------HHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhh
Q 048778 661 RAHASTGRLDHAFKIVSFMVANGCQL-NSNV-------YSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYER 732 (902)
Q Consensus 661 ~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (902)
.+|...|++++|+..+++.++. .| +... |..+...+...|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~------------------------------ 131 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAG------------------------------ 131 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTT------------------------------
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhc------------------------------
Confidence 9999999999999999999874 44 4433 444444444444
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCC
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGS--TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERK 810 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~ 810 (902)
++++|.+.|+++++.+|. +..+|..++..|...|+ ..++++...+ +..............+.
T Consensus 132 ---------~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~--~~~~~~~~~~~~~~~~~ 195 (228)
T 4i17_A 132 ---------NIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLA--SSNKEKYASEKAKADAA 195 (228)
T ss_dssp ---------CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGT--TTCHHHHHHHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcc--cCCHHHHHHHHHHHHHH
Confidence 999999999999999999 88999999999976654 4445555432 22222112222345567
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 048778 811 YDDCLEFMNLILESGFVPS-FESHCTVIQG 839 (902)
Q Consensus 811 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 839 (902)
+++|+.+++++.+. .|+ ......+..+
T Consensus 196 ~~~A~~~~~~a~~l--~p~~~~~~~~l~~i 223 (228)
T 4i17_A 196 FKKAVDYLGEAVTL--SPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc--CCCCHHHHHHHHHH
Confidence 89999999999985 564 3555444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-10 Score=108.29 Aligned_cols=162 Identities=13% Similarity=0.121 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhh
Q 048778 655 TYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSS 734 (902)
Q Consensus 655 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (902)
.+..+...+...|++++|...++++.+. .+.+...+..+...+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------------------- 56 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTG-------------------------------- 56 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTT--------------------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcC--------------------------------
Confidence 3445555556666666666666655542 1224455555555555555
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
++++|.+.++++++..|.+...+..++..+...|++++|.+.++++.+.. |+... ..++.+|...|+++
T Consensus 57 -------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~ 127 (186)
T 3as5_A 57 -------AVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFD 127 (186)
T ss_dssp -------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred -------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHH
Confidence 66666666666666666666666666666666666666666666666532 32222 55666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 813 DCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 813 ~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
+|..+++++.+.. ..+...+..++.++...|++++|...++++++.
T Consensus 128 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 128 EAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666542 223456666666666667777777776666544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5.4e-10 Score=106.24 Aligned_cols=162 Identities=15% Similarity=0.048 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAS 665 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 665 (902)
|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 4444445555555555555555554432 3344455555555555555555555555555432 2334445555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHH
Q 048778 666 TGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEH 745 (902)
Q Consensus 666 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (902)
.|++++|.+.++++.+. .+.+...+..+...+...| ++++
T Consensus 89 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~---------------------------------------~~~~ 128 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLG---------------------------------------RFDE 128 (186)
T ss_dssp HTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT---------------------------------------CHHH
T ss_pred hcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcC---------------------------------------cHHH
Confidence 55555555555555442 1223344444444444444 5555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 746 AFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 746 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
|.+.++++++..|.+..++..++..+...|++++|...++++.+
T Consensus 129 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 129 AIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-09 Score=117.90 Aligned_cols=266 Identities=9% Similarity=-0.031 Sum_probs=186.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHH
Q 048778 589 LVDGLFRAGNIALAMSMIEVMKLAGCPPNV----HTYTVIINGLCQRGRFKEAEMLLFKMFDLGV-SPN----HITYSIL 659 (902)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~l 659 (902)
....+...|++++|...+++.....-..+. .+++.+...+...|++++|...+++.....- ..+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 344566778888888888887765322222 2456666778888899998888888764210 112 2335677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhh
Q 048778 660 VRAHASTGRLDHAFKIVSFMVAN----GCQ--L-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYER 732 (902)
Q Consensus 660 ~~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (902)
...+...|++++|...+++..+. +.. | ....+..+...+...|
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g------------------------------ 149 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA------------------------------ 149 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT------------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc------------------------------
Confidence 88889999999999999988753 221 2 2335555666777777
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---HhH-H---H
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGS-----TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA---KAI-T---S 800 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~-~---~ 800 (902)
++++|...+++.++..+. ...++..++..+...|++++|...++++......++ ... . .
T Consensus 150 ---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 220 (373)
T 1hz4_A 150 ---------RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 220 (373)
T ss_dssp ---------CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 999999999998877532 245788899999999999999999999875422221 111 1 3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCcc-hhHHHHH
Q 048778 801 IIGCYCKERKYDDCLEFMNLILESGFVPS---FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG----IEEK-AAVLPYI 872 (902)
Q Consensus 801 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~----~~~~-~~~~~l~ 872 (902)
.+..+...|++++|..++++..+....+. ...+..++.++...|++++|...+++++.... .++. ..+..+.
T Consensus 221 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la 300 (373)
T 1hz4_A 221 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 44557899999999999998875321111 23466788899999999999999999765421 1122 2455667
Q ss_pred HHHhcCCcHhHHHHHHHHHHh
Q 048778 873 EFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 873 ~~~~~~g~~~~a~~~l~~~~~ 893 (902)
..+...|++++|...+++...
T Consensus 301 ~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 301 QLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 778889999999999888764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-09 Score=114.29 Aligned_cols=264 Identities=13% Similarity=0.076 Sum_probs=156.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHH
Q 048778 557 VLCKENKLKEEYAMFGKILKFGLVPSV----VTYTILVDGLFRAGNIALAMSMIEVMKLAGC-PPNV----HTYTVIING 627 (902)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~----~~~~~li~~ 627 (902)
.+...|++++|...+++........+. ..++.+...+...|++++|.+.+++.....- .++. .++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344455555555555555543211121 1344455556666777777776666554110 1111 234556666
Q ss_pred HHhcCCHHHHHHHHHHHHH----CCCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHH
Q 048778 628 LCQRGRFKEAEMLLFKMFD----LGVS--PN-HITYSILVRAHASTGRLDHAFKIVSFMVANGCQ--L--NSNVYSALLA 696 (902)
Q Consensus 628 ~~~~g~~~~A~~~~~~m~~----~g~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--~--~~~~~~~l~~ 696 (902)
+...|++++|...+++..+ .+.. |. ...+..+...+...|++++|...+++..+.... + ....+..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 7777777777777777653 2221 22 345556777777888888888888777653211 1 1234445555
Q ss_pred HHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC--CCCHHHHH-----HHHH
Q 048778 697 GLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG--GSTTDFYN-----FLVV 769 (902)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~-----~l~~ 769 (902)
.+...| ++++|...++++.... +.+...+. .++.
T Consensus 183 ~~~~~g---------------------------------------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 223 (373)
T 1hz4_A 183 CSLARG---------------------------------------DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 223 (373)
T ss_dssp HHHHHT---------------------------------------CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHcC---------------------------------------CHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 555555 8888888888877653 22211222 2334
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchH---hH-HHHHHHHHccCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHH
Q 048778 770 ELCRAGRIVEADRIMKDIMKSGVFPAK---AI-TSIIGCYCKERKYDDCLEFMNLILES----GFVPSF-ESHCTVIQGL 840 (902)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~l 840 (902)
.+...|++++|...++++......+.. .. ..++..+...|++++|...++++.+. +..++. ..+..++.++
T Consensus 224 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~ 303 (373)
T 1hz4_A 224 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 303 (373)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 477888888888888887653321111 12 56777888888888888888877632 211222 3666677788
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 048778 841 QSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 841 ~~~g~~~~A~~~~~~~~~~ 859 (902)
...|+.++|...+++++..
T Consensus 304 ~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 304 WQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 8888888888888887644
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-10 Score=117.17 Aligned_cols=225 Identities=12% Similarity=0.029 Sum_probs=155.0
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHH
Q 048778 630 QRGRFKEAEMLLFKMFD-------LGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVAN------GCQL-NSNVYSALL 695 (902)
Q Consensus 630 ~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~l~ 695 (902)
..|++++|+.++++..+ ...+....++..+...|...|++++|...++++++. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44566666666655543 121223667888888999999999999999888763 2223 345677777
Q ss_pred HHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc--------CCCCHHHHHHH
Q 048778 696 AGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC--------GGSTTDFYNFL 767 (902)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l 767 (902)
..+...| ++++|.+.++++++. .|....++..+
T Consensus 93 ~~~~~~g---------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 133 (283)
T 3edt_B 93 VLYGKRG---------------------------------------KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNL 133 (283)
T ss_dssp HHHHTTT---------------------------------------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhc---------------------------------------cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 7888887 999999999999887 35567889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------CCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHc-------CCCCCH-H
Q 048778 768 VVELCRAGRIVEADRIMKDIMKS------GVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILES-------GFVPSF-E 831 (902)
Q Consensus 768 ~~~~~~~g~~~~A~~~~~~~~~~------~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~-~ 831 (902)
+..|...|++++|+..++++++. +-.|.... ..++.+|...|++++|..+++++.+. ...+.. .
T Consensus 134 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (283)
T 3edt_B 134 ALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKP 213 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHH
Confidence 99999999999999999999874 11454444 88999999999999999999999853 122322 4
Q ss_pred HHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 832 SHCTVIQGLQSEGR------NKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 832 ~~~~l~~~l~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
.+..+.......+. +.++...++.... ........+..++..+...|++++|++.+++..+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 214 IWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444444333 3344433333210 11122446778889999999999999999988653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-10 Score=115.80 Aligned_cols=157 Identities=13% Similarity=0.111 Sum_probs=124.7
Q ss_pred HhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhh
Q 048778 664 ASTGRLDHAFKIVSFMVAN-------GCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKN 736 (902)
Q Consensus 664 ~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (902)
...|++++|+.++++.++. ..+....++..+...+...|
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------------------------- 57 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN---------------------------------- 57 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT----------------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc----------------------------------
Confidence 4567888888888877652 11223556777777787877
Q ss_pred hhhhccHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCchHhH--HH
Q 048778 737 FLREMDVEHAFRLRDRIESC--------GGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS------GVFPAKAI--TS 800 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~~~~--~~ 800 (902)
++++|...++++++. .|....++..++..|...|++++|++.++++++. .-.|+... ..
T Consensus 58 -----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 132 (283)
T 3edt_B 58 -----KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNN 132 (283)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 999999999999876 2556778999999999999999999999999874 11344444 88
Q ss_pred HHHHHHccCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 801 IIGCYCKERKYDDCLEFMNLILES------GFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 801 l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
++.+|...|++++|..+++++.+. +-.|. ..++..++.++...|++++|+.+++++++.
T Consensus 133 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999864 11333 477889999999999999999999998764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=7.5e-10 Score=114.12 Aligned_cols=94 Identities=7% Similarity=-0.068 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCchH-------hH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH---
Q 048778 763 FYNFLVVELCRA-GRIVEADRIMKDIMKSGVFPAK-------AI-TSIIGCYCKERKYDDCLEFMNLILESGFVPSF--- 830 (902)
Q Consensus 763 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~-------~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--- 830 (902)
++..++..|... |++++|++.|+++++. .|+. .. ..++..|...|++++|+..++++.+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 444555555553 5555555555555441 1211 11 44455555555555555555555542111110
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 831 ---ESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 831 ---~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
..|..++.++...|++++|+..++++++
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1334444555555555555555555443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-09 Score=107.85 Aligned_cols=119 Identities=9% Similarity=-0.071 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHH
Q 048778 616 PNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPN---HITYSILVRAHASTGRLDHAFKIVSFMVANGC-QLN-SNV 690 (902)
Q Consensus 616 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~-~~~ 690 (902)
.+...+..+...+.+.|++++|+..|+++++.. +.+ ...+..+..+|.+.|++++|+..+++.++... .|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 455666777777888888888888888887653 223 56777888888888888888888888887411 112 345
Q ss_pred HHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHH
Q 048778 691 YSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNF 766 (902)
Q Consensus 691 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 766 (902)
+..+..++...+. ......|++++|...|+++++..|.+......
T Consensus 92 ~~~lg~~~~~~~~-------------------------------~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 136 (261)
T 3qky_A 92 EYERAMCYYKLSP-------------------------------PYELDQTDTRKAIEAFQLFIDRYPNHELVDDA 136 (261)
T ss_dssp HHHHHHHHHHHCC-------------------------------CTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHHHHHHHHhcc-------------------------------cccccchhHHHHHHHHHHHHHHCcCchhHHHH
Confidence 5556666665210 00001339999999999999999888766633
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-09 Score=109.82 Aligned_cols=167 Identities=11% Similarity=0.123 Sum_probs=134.1
Q ss_pred chhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-chHhH--HHH
Q 048778 728 DDYERSSKNFLREMDVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF-PAKAI--TSI 801 (902)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~--~~l 801 (902)
+.+...+..+.+.|++++|...|+++++..|.+ ..++..++.+|.+.|++++|+..|+++++..+. |.... ..+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 344455555556669999999999999998888 889999999999999999999999999985432 22222 788
Q ss_pred HHHHHc--------cCChHHHHHHHHHHHHcCCCCC-HHHH-----------------HHHHHHHHhcCCHHHHHHHHHH
Q 048778 802 IGCYCK--------ERKYDDCLEFMNLILESGFVPS-FESH-----------------CTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 802 ~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
+.++.. .|++++|+..++++++. .|+ .... ..++.+|.+.|++++|+..+++
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888988 99999999999999975 343 2222 5678999999999999999999
Q ss_pred HHhCCCCC--cchhHHHHHHHHhcC----------CcHhHHHHHHHHHHhcCc
Q 048778 856 LFRYNGIE--EKAAVLPYIEFLLTG----------DELGKSIDLLNLIDQVHY 896 (902)
Q Consensus 856 ~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~l~~~~~~~~ 896 (902)
+++..+.. ....+..++.++... |++++|+..++++.+...
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 98775432 234677788888765 999999999999987653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-09 Score=112.13 Aligned_cols=189 Identities=14% Similarity=0.045 Sum_probs=132.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 048778 627 GLCQRGRFKEAEMLLFKMFDL----GVSPN-HITYSILVRAHASTGRLDHAFKIVSFMVAN----GCQL-NSNVYSALLA 696 (902)
Q Consensus 627 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~ 696 (902)
.|...|++++|...|++..+. |-+++ ..+|+.+..+|.+.|++++|+..+++.++. |-.. ...++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667777777776666532 21111 456777777888888888888888777652 1000 1235666666
Q ss_pred HHHhc-CCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC------HHHHHHHHH
Q 048778 697 GLVSS-NKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGST------TDFYNFLVV 769 (902)
Q Consensus 697 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~ 769 (902)
.|... | ++++|+..|+++++..|.+ ..++..++.
T Consensus 126 ~~~~~lg---------------------------------------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 166 (292)
T 1qqe_A 126 ILENDLH---------------------------------------DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD 166 (292)
T ss_dssp HHHHTTC---------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhc---------------------------------------CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 77664 7 9999999999999886433 457899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHh------H-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH------HHHHHH
Q 048778 770 ELCRAGRIVEADRIMKDIMKSGVFPAKA------I-TSIIGCYCKERKYDDCLEFMNLILESGFVPSF------ESHCTV 836 (902)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l 836 (902)
.|...|++++|+..|+++.+..+..... . ..++.++...|++++|...+++.++. .|+. ..+..+
T Consensus 167 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l 244 (292)
T 1qqe_A 167 LKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSL 244 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHH
Confidence 9999999999999999999854333221 3 67788999999999999999999763 4542 123445
Q ss_pred HHHHH--hcCCHHHHHHHHHHH
Q 048778 837 IQGLQ--SEGRNKQAKNLVSDL 856 (902)
Q Consensus 837 ~~~l~--~~g~~~~A~~~~~~~ 856 (902)
+..+. ..+++++|+..|+++
T Consensus 245 ~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 245 IDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHHHhccC
Confidence 55553 457799999999875
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-09 Score=103.74 Aligned_cols=114 Identities=9% Similarity=-0.005 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCC--hHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERK--YDDCLEF 817 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~--~~~A~~~ 817 (902)
++++|...|+++++.+|.+..+|..++..|...|++++|+..|+++++ +.|+... ..++.+|...|. .+++...
T Consensus 69 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555555555555555555555555555555555666666666655555 3343333 455555544332 2233333
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 818 MNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 818 ~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
++.+.. ..|....+...+.++...|++++|+..++++++.
T Consensus 147 ~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 147 YKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 333321 1122223333444555556666666666665443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.3e-10 Score=102.54 Aligned_cols=141 Identities=12% Similarity=-0.041 Sum_probs=115.7
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
..+...|++++|+..+++.....|.++..+..++..|.+.|++++|++.|+++++ +.|+... ..++.+|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchH
Confidence 3444566999999999999988888899999999999999999999999999999 5576655 89999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCcchhHHHHHHHHhcCCc
Q 048778 813 DCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNL-VSDLFRYNGIEEKAAVLPYIEFLLTGDE 880 (902)
Q Consensus 813 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (902)
+|+..++++++. .| +...|..++.+|.+.|++++|... ++++++..+. ++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 999999999985 56 468899999999999999876654 6888777543 34455555555555664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.3e-09 Score=102.11 Aligned_cols=128 Identities=11% Similarity=-0.012 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 048778 763 FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQG 839 (902)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 839 (902)
.+..++..|...|++++|+..|+++++. .|+... ..++.+|...|++++|+..++++++. .| +..++..++.+
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNY 131 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence 4566899999999999999999999994 465554 89999999999999999999999985 56 46888899988
Q ss_pred HHhcCC--HHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcCc
Q 048778 840 LQSEGR--NKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVHY 896 (902)
Q Consensus 840 l~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~ 896 (902)
|...|+ .+++...++++. ...|....+...+.++...|++++|+..+++..+...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 132 YYLTAEQEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHhHHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 877665 455666666653 2333344556677788889999999999999877643
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.07 E-value=5e-09 Score=103.21 Aligned_cols=168 Identities=7% Similarity=-0.004 Sum_probs=131.6
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh--H-HHHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA--I-TSII 802 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~-~~l~ 802 (902)
.+...+..+...|++++|...|+++++..|.+ ..++..++.+|.+.|++++|+..|+++++..+..... . ..++
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34455566667779999999999999987665 3689999999999999999999999999855432221 2 5556
Q ss_pred HHHHc------------------cCChHHHHHHHHHHHHcCCCCCH-HHH-----------------HHHHHHHHhcCCH
Q 048778 803 GCYCK------------------ERKYDDCLEFMNLILESGFVPSF-ESH-----------------CTVIQGLQSEGRN 846 (902)
Q Consensus 803 ~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~-~~~-----------------~~l~~~l~~~g~~ 846 (902)
.++.. .|++++|+..++++++. .|+. ..+ ..++..|.+.|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 55554 67999999999999975 4542 222 3567788999999
Q ss_pred HHHHHHHHHHHhCCCCCc--chhHHHHHHHHhcCCcHhHHHHHHHHHHhcCccc
Q 048778 847 KQAKNLVSDLFRYNGIEE--KAAVLPYIEFLLTGDELGKSIDLLNLIDQVHYRQ 898 (902)
Q Consensus 847 ~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~~~ 898 (902)
++|+..++++++..+... ...+..++.++.+.|++++|++.++.+...+..-
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 999999999987754322 3467788999999999999999999998877543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-09 Score=102.87 Aligned_cols=162 Identities=12% Similarity=0.097 Sum_probs=130.6
Q ss_pred chhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHH-H
Q 048778 728 DDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGC-Y 805 (902)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~-~ 805 (902)
+.+...+..+...|++++|...|+++++.+|.+...+..++..+...|++++|+..++++.+.. |+... ..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3445556667777899999999999999999999999999999999999999999999998744 42222 222222 2
Q ss_pred HccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cchhHHHHHHHHhcCCcHhH
Q 048778 806 CKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE-EKAAVLPYIEFLLTGDELGK 883 (902)
Q Consensus 806 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 883 (902)
...+...+|+..++++++. .| +...+..++.++...|++++|+..++++++..+.+ +...+..++..+...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 2333445689999999875 56 46889999999999999999999999998887654 35578889999999999999
Q ss_pred HHHHHHHHHh
Q 048778 884 SIDLLNLIDQ 893 (902)
Q Consensus 884 a~~~l~~~~~ 893 (902)
|+..+++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-09 Score=125.57 Aligned_cols=182 Identities=12% Similarity=0.111 Sum_probs=147.1
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhh
Q 048778 664 ASTGRLDHAFKIVSFMV--------ANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSK 735 (902)
Q Consensus 664 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (902)
...|++++|++.+++++ +. .+.+...+..+...+...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g--------------------------------- 447 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLG--------------------------------- 447 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHT---------------------------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcC---------------------------------
Confidence 66788888988888887 32 2335667777888888888
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHH
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDD 813 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~ 813 (902)
++++|.+.|+++++.+|.+..+|..++.+|...|++++|++.|+++++ ..|+... ..++.+|...|++++
T Consensus 448 ------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~ 519 (681)
T 2pzi_A 448 ------DVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE 519 (681)
T ss_dssp ------CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT
T ss_pred ------CHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH
Confidence 999999999999999999999999999999999999999999999999 4566555 899999999999999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCc--------HhHH
Q 048778 814 CLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDE--------LGKS 884 (902)
Q Consensus 814 A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a 884 (902)
++.++++++. .| +...|..++.+|.+.|++++|++.++++++.... +...|..++.++...|+ +++|
T Consensus 520 -~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~A 595 (681)
T 2pzi_A 520 -HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGRSTSEVTEEQIRDA 595 (681)
T ss_dssp -TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC-------CCHHHHHHH
T ss_pred -HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc-cHHHHHHHHHHHHccCCCCCCCHHHHHHH
Confidence 9999999985 45 4588999999999999999999999998655432 35567777888776554 5555
Q ss_pred HHHHHHH
Q 048778 885 IDLLNLI 891 (902)
Q Consensus 885 ~~~l~~~ 891 (902)
.+.++.+
T Consensus 596 ~~~l~~~ 602 (681)
T 2pzi_A 596 ARRVEAL 602 (681)
T ss_dssp HHHHHTS
T ss_pred HHHHhhC
Confidence 5555433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.04 E-value=4.2e-08 Score=98.37 Aligned_cols=183 Identities=10% Similarity=0.001 Sum_probs=134.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 567 EYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGC-PPNVHTYTVIINGLCQRGRFKEAEMLLFKMF 645 (902)
Q Consensus 567 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 645 (902)
|...|++..+.+ .++..++..+..++...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665543 44556666778888888899999988888876542 1355677788888999999999999999988
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCC
Q 048778 646 DLGVSP-----NHITYSILVRA--HASTG--RLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHS 716 (902)
Q Consensus 646 ~~g~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 716 (902)
+. .| +..+...+..+ ....| ++.+|..+|+++.+. .|+......++.++.+.|
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g-------------- 225 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQR-------------- 225 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHT--------------
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcC--------------
Confidence 74 56 35555556655 33334 899999999998763 455334444555777777
Q ss_pred CCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 717 DAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC----------GGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
++++|.+.++.+.+. +|.|+.++..++......|+ +|.+++++
T Consensus 226 -------------------------~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~q 278 (310)
T 3mv2_B 226 -------------------------NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQ 278 (310)
T ss_dssp -------------------------CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHH
T ss_pred -------------------------CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHH
Confidence 999999999987765 37889999888877777887 89999999
Q ss_pred HHHcCCCchHh
Q 048778 787 IMKSGVFPAKA 797 (902)
Q Consensus 787 ~~~~~~~p~~~ 797 (902)
+.+ ..|+..
T Consensus 279 L~~--~~P~hp 287 (310)
T 3mv2_B 279 LVK--LDHEHA 287 (310)
T ss_dssp HHH--TTCCCH
T ss_pred HHH--hCCCCh
Confidence 998 567765
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-08 Score=90.97 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=81.4
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCCh
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKY 811 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~ 811 (902)
+..+...|++++|...++++++.+|.+...+..++..+...|++++|...++++.+.+ |+... ..++.++...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHhcCH
Confidence 3344444477777777777777777777777777777777777777777777776643 33222 6666777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 812 DDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
++|..+++++.+.. ..+...+..++.++...|++++|...++++++.
T Consensus 86 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 86 DEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777776542 223456666677777777777777777776544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.1e-09 Score=107.36 Aligned_cols=148 Identities=11% Similarity=0.024 Sum_probs=128.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|...|+++++.+|.+..++..|+..|...|++++|+..++++... .|+... ......+...++.++|...++
T Consensus 132 ~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~ 209 (287)
T 3qou_A 132 NYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQ 209 (287)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccCccHHHHH
Confidence 9999999999999999999999999999999999999999999999874 455444 455555778889999999999
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cchhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 820 LILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE-EKAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 820 ~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
++++. .| +...+..++.+|...|++++|+..++++++..+.. +...+..++..+...|+.++|...+++...
T Consensus 210 ~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 210 QQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99975 45 56889999999999999999999999998886543 356788999999999999999998887653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-07 Score=94.49 Aligned_cols=265 Identities=10% Similarity=0.051 Sum_probs=182.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048778 451 DGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTG 530 (902)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 530 (902)
+-..-.|++..++.-...+.. ......-.-+.++|...|++... ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 344557888887773332221 22233334455778888877642 12234444444444433 322
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048778 531 EALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGL-VPSVVTYTILVDGLFRAGNIALAMSMIEVM 609 (902)
Q Consensus 531 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (902)
|+..|++....+ .++..++..+...+...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677888877654 45566667888899999999999999999877553 235777888899999999999999999999
Q ss_pred HHCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 610 KLAGCPP-----NVHTYTVIINGL--CQRG--RFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMV 680 (902)
Q Consensus 610 ~~~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 680 (902)
.+. .| +..+...|+.++ ...| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 875 56 355666666663 3334 899999999999765 4664444555558999999999999999776
Q ss_pred HC-----CC---CC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHH
Q 048778 681 AN-----GC---QL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRD 751 (902)
Q Consensus 681 ~~-----g~---~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 751 (902)
+. .. .| +..+...++......| + +|.++++
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg---------------------------------------k--~a~~l~~ 277 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQG---------------------------------------L--DTEDLTN 277 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT---------------------------------------C--TTHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhC---------------------------------------h--HHHHHHH
Confidence 42 01 24 5566656666666667 6 7889999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 752 RIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 752 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++.+..|.++.... +.+....|+++..
T Consensus 278 qL~~~~P~hp~i~d-----------~~~k~~~Fd~~~~ 304 (310)
T 3mv2_B 278 QLVKLDHEHAFIKH-----------HQEIDAKFDELVR 304 (310)
T ss_dssp HHHHTTCCCHHHHH-----------HHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHH-----------HHHHHHHHHHHHH
Confidence 99999999986554 4555666666654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-09 Score=100.06 Aligned_cols=142 Identities=13% Similarity=0.015 Sum_probs=108.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhh
Q 048778 659 LVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNF 737 (902)
Q Consensus 659 l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (902)
|...+...|++++|+..++.... ..| +...+..+...|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~----------------------------------- 45 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAK----------------------------------- 45 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTT-----------------------------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcC-----------------------------------
Confidence 44556667888888888888764 334 2345556777777777
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHH
Q 048778 738 LREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCL 815 (902)
Q Consensus 738 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~ 815 (902)
++++|++.|+++++.+|.++.+|..++.+|...|++++|+..|+++++ +.|+... ..++.+|.+.|++++|.
T Consensus 46 ----~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa 119 (150)
T 4ga2_A 46 ----EYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRA 119 (150)
T ss_dssp ----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHH
T ss_pred ----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 999999999999999999999999999999999999999999999988 4565544 88888899999988766
Q ss_pred HH-HHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 048778 816 EF-MNLILESGFVP-SFESHCTVIQGLQSEGR 845 (902)
Q Consensus 816 ~~-~~~~~~~~~~p-~~~~~~~l~~~l~~~g~ 845 (902)
.. ++++++. .| ++..|.....++...|+
T Consensus 120 ~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 120 KYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 55 5788774 56 45777777778877775
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.9e-09 Score=123.49 Aligned_cols=171 Identities=12% Similarity=-0.015 Sum_probs=92.6
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 594 FRAGNIALAMSMIEVMK--------LAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAS 665 (902)
Q Consensus 594 ~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 665 (902)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..++++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45566666666666665 221 3344455555566666666666666666665442 3345555556666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHH
Q 048778 666 TGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVE 744 (902)
Q Consensus 666 ~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (902)
.|++++|++.|+++++. .| +...+..+...+.+.| +++
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g---------------------------------------~~~ 518 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAG---------------------------------------NTD 518 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHT---------------------------------------CCC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcC---------------------------------------ChH
Confidence 66666666666665542 23 3445555555555555 555
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCC
Q 048778 745 HAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERK 810 (902)
Q Consensus 745 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~ 810 (902)
+ .+.|+++++.+|.+..+|..++.+|.+.|++++|++.|+++++ ..|+... ..++.++...|+
T Consensus 519 ~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 519 E-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp T-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred H-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 5 5556666655566666666666666666666666666666555 3344333 444555544444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-08 Score=98.17 Aligned_cols=195 Identities=10% Similarity=-0.011 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHH
Q 048778 618 VHTYTVIINGLCQRGRFKEAEMLLFKMFDLGV-SP-NHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNS----NVY 691 (902)
Q Consensus 618 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~ 691 (902)
...+..+...+...|++++|+..|+++.+..- .| ....+..++.+|.+.|++++|+..++++++. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 44556667778888888888888888876421 11 1356777788888888888888888888763 3322 123
Q ss_pred HHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhh-------hhhhccHHHHHHHHHHHHhcCCCCHHHH
Q 048778 692 SALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKN-------FLREMDVEHAFRLRDRIESCGGSTTDFY 764 (902)
Q Consensus 692 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 764 (902)
..+..++...+. ..... ....|+.++|...|+++++..|.+..++
T Consensus 82 ~~~g~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~ 133 (225)
T 2yhc_A 82 YMRGLTNMALDD----------------------------SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT 133 (225)
T ss_dssp HHHHHHHHHHHC------------------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred HHHHHHHHhhhh----------------------------hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 333333322220 00000 1124566777777777777666666554
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHH
Q 048778 765 NFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPS----FESHCTVIQGL 840 (902)
Q Consensus 765 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~l 840 (902)
..+...... ..... .....++..|...|++++|+..++++++. .|+ ...+..++.++
T Consensus 134 ~a~~~l~~~----------~~~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~ 194 (225)
T 2yhc_A 134 DATKRLVFL----------KDRLA-------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAY 194 (225)
T ss_dssp HHHHHHHHH----------HHHHH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----------HHHHH-------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHH
Confidence 332211100 00000 00145677889999999999999999875 343 26788899999
Q ss_pred HhcCCHHHHHHHHHHHHhCCC
Q 048778 841 QSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 841 ~~~g~~~~A~~~~~~~~~~~~ 861 (902)
.+.|++++|++.++++...++
T Consensus 195 ~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 195 RQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHCCS
T ss_pred HHcCCcHHHHHHHHHHHhhCC
Confidence 999999999999998876654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-07 Score=96.21 Aligned_cols=111 Identities=13% Similarity=0.071 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHH-HH
Q 048778 745 HAFRLRDRIESCGGSTTDFYNFLVVELCRAGR------IVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDD-CL 815 (902)
Q Consensus 745 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~-A~ 815 (902)
++++.++++++.+|.|..+|+.....+...|+ ++++++.+++++.. .|++.. +.+...+.+.|+..+ +.
T Consensus 164 ~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~ 241 (306)
T 3dra_A 164 KELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLE 241 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHH
Confidence 55555555555555555555555555555444 55555555555552 233322 444444444444222 33
Q ss_pred HHHHHHHHcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 816 EFMNLILESG-F-VPSFESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 816 ~~~~~~~~~~-~-~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
.+.+++.+.+ . ..++..+..++++|.+.|+.++|+++++.+.
T Consensus 242 ~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 242 EFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 3444443211 0 1234555556666666666666666666654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-07 Score=96.27 Aligned_cols=221 Identities=7% Similarity=0.040 Sum_probs=171.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCcCC
Q 048778 633 RFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTG--RLDHAFKIVSFMVANGCQLNSNVYSALLAGL----VSSNKASG 706 (902)
Q Consensus 633 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~----~~~~~~~~ 706 (902)
..++|+.++++++... +-+...|+.-..++...| ++++++++++.++.. .+-+..+|+.-...+ ...+.
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~-nPk~y~aW~~R~~iL~~~~~~l~~--- 122 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD-NEKNYQIWNYRQLIIGQIMELNNN--- 122 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-CTTCCHHHHHHHHHHHHHHHHTTT---
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-CcccHHHHHHHHHHHHHHHHhccc---
Confidence 3468999999988764 445677888888888888 999999999999874 233556676555554 33310
Q ss_pred ccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH--HHHHHH
Q 048778 707 VLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIV--EADRIM 784 (902)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~ 784 (902)
.+++++++++++++++.+|.+..+|..-...+.+.|+++ ++++.+
T Consensus 123 ---------------------------------~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~ 169 (306)
T 3dra_A 123 ---------------------------------DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFV 169 (306)
T ss_dssp ---------------------------------CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ---------------------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 028899999999999999999999999999999999998 999999
Q ss_pred HHHHHcCCCchHhHHHHHHHHHccCC------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 048778 785 KDIMKSGVFPAKAITSIIGCYCKERK------YDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRN-KQAKNLVSDL 856 (902)
Q Consensus 785 ~~~~~~~~~p~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~-~~A~~~~~~~ 856 (902)
+++++..+....+.+....++...|. +++++++++++++. .| +...|..+..++.+.|+. +++..+.+++
T Consensus 170 ~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 170 DKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 99999554333333667777777776 99999999999975 45 568888898899998884 4466677776
Q ss_pred HhCC--CCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 857 FRYN--GIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 857 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
.+.+ ...+...+..+++.+.+.|+.++|+++++.+.+
T Consensus 248 ~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 248 VDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 5443 123455677888999999999999999999986
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.3e-08 Score=94.61 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=34.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 048778 602 AMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTG----RLDHAFKIVS 677 (902)
Q Consensus 602 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~A~~~~~ 677 (902)
|++.|++..+.| +...+..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|+++++
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444444444433 44444444444545555555555555554433 33444444444444 3 4555555555
Q ss_pred HHHH
Q 048778 678 FMVA 681 (902)
Q Consensus 678 ~m~~ 681 (902)
+..+
T Consensus 78 ~A~~ 81 (212)
T 3rjv_A 78 KAVE 81 (212)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.6e-08 Score=87.63 Aligned_cols=128 Identities=14% Similarity=0.138 Sum_probs=64.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 621 YTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVS 700 (902)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 700 (902)
|..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3344444555555555555555554432 2334444445555555555555555555554421 2233444444444444
Q ss_pred cCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 701 SNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEA 780 (902)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 780 (902)
.| ++++|.+.++++.+..|.+...+..++..+...|++++|
T Consensus 82 ~~---------------------------------------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 122 (136)
T 2fo7_A 82 QG---------------------------------------DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122 (136)
T ss_dssp TT---------------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred hc---------------------------------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHH
Confidence 44 555555555555555555555555555555555555555
Q ss_pred HHHHHHHHH
Q 048778 781 DRIMKDIMK 789 (902)
Q Consensus 781 ~~~~~~~~~ 789 (902)
...++++.+
T Consensus 123 ~~~~~~~~~ 131 (136)
T 2fo7_A 123 IEYYQKALE 131 (136)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 555555554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.5e-08 Score=93.54 Aligned_cols=182 Identities=12% Similarity=0.009 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCcccccccc
Q 048778 635 KEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSC 714 (902)
Q Consensus 635 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 714 (902)
.+|...|++..+.| +...+..+...|...+++++|+++|++..+.| +...+..|...|...| .+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~g-~~--------- 66 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRNP-QQ--------- 66 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSST-TS---------
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC-CC---------
Confidence 35778888888764 77888889999999999999999999998754 4566666776666522 11
Q ss_pred CCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 048778 715 HSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCR----AGRIVEADRIMKDIMKS 790 (902)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 790 (902)
.+.++|.+.|+++.+ +.++.++..|+..|.. .+++++|++.|+++.+.
T Consensus 67 --------------------------~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 67 --------------------------ADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp --------------------------CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred --------------------------CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 189999999999976 4678889999999887 88999999999999885
Q ss_pred CCCch-HhH-HHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHh
Q 048778 791 GVFPA-KAI-TSIIGCYCK----ERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSE-G-----RNKQAKNLVSDLFR 858 (902)
Q Consensus 791 ~~~p~-~~~-~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~-g-----~~~~A~~~~~~~~~ 858 (902)
+...+ ... ..|+.+|.. .+++++|+.+++++.+. ..+...+..++.+|... | +.++|+.+++++.+
T Consensus 119 ~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 119 SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 53211 222 888888888 78999999999999875 23455777788888653 3 89999999999887
Q ss_pred CCCC
Q 048778 859 YNGI 862 (902)
Q Consensus 859 ~~~~ 862 (902)
.+..
T Consensus 197 ~g~~ 200 (212)
T 3rjv_A 197 EGFD 200 (212)
T ss_dssp HTCH
T ss_pred cCCH
Confidence 7643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-08 Score=103.29 Aligned_cols=165 Identities=12% Similarity=0.073 Sum_probs=112.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048778 616 PNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALL 695 (902)
Q Consensus 616 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 695 (902)
.+...+..+...+...|++++|+..+++..+.. +.+...+..+..++.+.|++++|...++++.. ..|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 344556666677777777777777777777653 44566777777777788888888877777765 345544332222
Q ss_pred H-HHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 048778 696 A-GLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRA 774 (902)
Q Consensus 696 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 774 (902)
. .+...+ +.++|...++++++.+|.+...+..++..|...
T Consensus 192 ~~~l~~~~---------------------------------------~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~ 232 (287)
T 3qou_A 192 QIELLXQA---------------------------------------ADTPEIQQLQQQVAENPEDAALATQLALQLHQV 232 (287)
T ss_dssp HHHHHHHH---------------------------------------TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhc---------------------------------------ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc
Confidence 2 233334 666777888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHH
Q 048778 775 GRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 775 g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
|++++|++.|+++++..+..+... ..++..|...|+.++|...+++.+
T Consensus 233 g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 233 GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 888888888888877543332132 777777777777777777777654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-08 Score=116.56 Aligned_cols=151 Identities=7% Similarity=-0.026 Sum_probs=99.7
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHH
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFM 818 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~ 818 (902)
|++++|.+.++++++.+|.+...|..++..|...|++++|++.++++++ ..|+... ..++.+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3778888888888887788888888888888888888888888888877 4455443 77788888888888888888
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcC---CcHhHHHHHHHHHHhc
Q 048778 819 NLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTG---DELGKSIDLLNLIDQV 894 (902)
Q Consensus 819 ~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~l~~~~~~ 894 (902)
+++.+. .| +...+..++.+|.+.|++++|++.++++++.... +...+..++..+... |++++|.+.+++..+.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 888764 34 4577777888888888888888888887766533 345666777777777 8888888888877766
Q ss_pred Cc
Q 048778 895 HY 896 (902)
Q Consensus 895 ~~ 896 (902)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.8e-09 Score=97.66 Aligned_cols=160 Identities=11% Similarity=0.041 Sum_probs=101.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 048778 622 TVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAG-LVS 700 (902)
Q Consensus 622 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-~~~ 700 (902)
..+...+...|++++|+..+++..+.. +.+...+..+..++.+.|++++|+..++++.+. .|+...+..+... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 344555666777777777777665532 345666777777777777777777777766542 3333322221111 111
Q ss_pred cCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 048778 701 SNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEA 780 (902)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 780 (902)
.+ ...+|...++++++.+|.++..+..++..+...|++++|
T Consensus 87 ~~---------------------------------------~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A 127 (176)
T 2r5s_A 87 QA---------------------------------------AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEA 127 (176)
T ss_dssp HH---------------------------------------TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hc---------------------------------------ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHH
Confidence 11 223467777888877788888888888888888888888
Q ss_pred HHHHHHHHHcCCCchH-hH-HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 781 DRIMKDIMKSGVFPAK-AI-TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 781 ~~~~~~~~~~~~~p~~-~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
+..|+++++..+.+.. .. ..++.+|...|+.++|...+++.+.
T Consensus 128 ~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 128 LELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 8888888774433322 22 6777777777777777777776653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-09 Score=96.43 Aligned_cols=117 Identities=10% Similarity=0.026 Sum_probs=100.3
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++..+-..++++++.+|.+...+..++..+.+.|++++|+..|+++++ ..|+... ..++.+|...|++++|+..++
T Consensus 17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~ 94 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYA 94 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 444444566777777888999999999999999999999999999998 4566555 889999999999999999999
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 820 LILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 820 ~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
++++. .| ++..|..++.+|...|++++|+..|+++++....
T Consensus 95 ~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 95 VAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99985 56 4688999999999999999999999999887643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.7e-08 Score=112.29 Aligned_cols=151 Identities=12% Similarity=0.048 Sum_probs=113.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccc
Q 048778 631 RGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLS 709 (902)
Q Consensus 631 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~ 709 (902)
.|++++|+..+++..+.. +.+...+..+...+.+.|++++|.+.+++.++. .| +...+..+...+...|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g------- 71 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQ------- 71 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTT-------
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC-------
Confidence 478899999999988754 456888899999999999999999999999874 44 5678888888888888
Q ss_pred cccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 710 ISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|.+.++++++.+|.+...+..++..|...|++++|++.++++.+
T Consensus 72 --------------------------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 119 (568)
T 2vsy_A 72 --------------------------------RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119 (568)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------------------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988
Q ss_pred cCCCchHhH--HHHHHHHHcc---CChHHHHHHHHHHHHcC
Q 048778 790 SGVFPAKAI--TSIIGCYCKE---RKYDDCLEFMNLILESG 825 (902)
Q Consensus 790 ~~~~p~~~~--~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 825 (902)
. .|+... ..++.+|... |++++|.+.++++++.+
T Consensus 120 ~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 120 L--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred h--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 4 454443 8888899999 99999999999998753
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.1e-08 Score=86.85 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=68.5
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHH
Q 048778 756 CGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFES 832 (902)
Q Consensus 756 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~ 832 (902)
.+|.....+..++..|.+.|++++|++.|+++++ ..|+... ..++.+|...|++++|+..++++++. .| +...
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a 83 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKG 83 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHH
Confidence 4455566666777777777777777777777776 3344433 66677777777777777777777664 34 3466
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 833 HCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 833 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
|..++.++...|++++|+..++++++..+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 77777777777777777777777766543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.83 E-value=2.9e-06 Score=93.54 Aligned_cols=375 Identities=7% Similarity=-0.056 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHH
Q 048778 389 IIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQ-LDIALKIFN 467 (902)
Q Consensus 389 ~~~A~~~~~~m~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~ 467 (902)
++.|..+|+.+... .|. |+.+.+..+|++.+.. .|+...|...+....+.++ .+....+|+
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 66666666666543 222 7777777777777763 3577777777766655553 344556666
Q ss_pred HHHhC-CC-CCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 468 SMSIF-GL-VPDGFTFTSIIDGLC----KLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQ 541 (902)
Q Consensus 468 ~m~~~-g~-~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 541 (902)
..... |. ..+...|...+..+. ..++.+.+..+|++.+......-...|...... .+......+.++..+..
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~- 150 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL- 150 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH-
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh-
Confidence 65543 32 234556666555433 234566666677666653211111122211111 11111112222221111
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCC
Q 048778 542 NTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAG-------NIALAMSMIEVMKLAGC 614 (902)
Q Consensus 542 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~ 614 (902)
+.+..|..+++.+...--..+...|...++--...+ ..+.+..+|++++.. +
T Consensus 151 --------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~ 209 (493)
T 2uy1_A 151 --------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-F 209 (493)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-T
T ss_pred --------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-C
Confidence 123333333333332100012334444333221110 023455666666664 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------C
Q 048778 615 PPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGC---------Q 685 (902)
Q Consensus 615 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---------~ 685 (902)
+.+...|...+.-+...|+.++|..++++.... +.+...+.. |....+.++. ++.+.+.-. .
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~ 280 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKV 280 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhh
Confidence 445566666666666677777777777777665 223222221 1111111111 222211100 0
Q ss_pred C---CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHH
Q 048778 686 L---NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTD 762 (902)
Q Consensus 686 ~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 762 (902)
+ ...+|...+ +...+.++.+.|..+|+++ ...+.+..
T Consensus 281 ~~~~~~~lw~~y~---------------------------------------~~~~r~~~~~~AR~i~~~A-~~~~~~~~ 320 (493)
T 2uy1_A 281 FSKELDLLRINHL---------------------------------------NYVLKKRGLELFRKLFIEL-GNEGVGPH 320 (493)
T ss_dssp CHHHHHHHHHHHH---------------------------------------HHHHHHHCHHHHHHHHHHH-TTSCCCHH
T ss_pred cccccHHHHHHHH---------------------------------------HHHHHcCCHHHHHHHHHHh-hCCCCChH
Confidence 0 011222222 2223344888899999888 33233455
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048778 763 FYNFLVVELCRAG-RIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQ 841 (902)
Q Consensus 763 ~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~ 841 (902)
.|...+..-...+ +.+.|..+|+.+++............++...+.|+.+.|..+++++. .....|...+..-.
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~ 395 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEF 395 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 5654444433344 58889999988887542211112456666777888888888888862 23456666666556
Q ss_pred hcCCHHHHHHHHHHHHh
Q 048778 842 SEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 842 ~~g~~~~A~~~~~~~~~ 858 (902)
..|+.+.+..+++++.+
T Consensus 396 ~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 396 MVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHSCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 67888888888888753
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-07 Score=98.57 Aligned_cols=194 Identities=9% Similarity=0.037 Sum_probs=125.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048778 596 AGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ-RGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFK 674 (902)
Q Consensus 596 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 674 (902)
.|++++|.+++++..+.. +.. +.. .+++++|...|.++ +..|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 567888999888876531 111 111 46677777766654 345667788888888
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHH
Q 048778 675 IVSFMVAN----GCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRL 749 (902)
Q Consensus 675 ~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 749 (902)
.+.++.+. +-.+ -..++..+...|...| ++++|...
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g---------------------------------------~~~~A~~~ 98 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ---------------------------------------RMPEAVQY 98 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------------------------------------CGGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC---------------------------------------CHHHHHHH
Confidence 77777642 1001 1235555555666666 77777777
Q ss_pred HHHHHhcC--CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-------HhH-HHHHHHHHccCChHHHH
Q 048778 750 RDRIESCG--GS----TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA-------KAI-TSIIGCYCKERKYDDCL 815 (902)
Q Consensus 750 ~~~~~~~~--~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~-~~l~~~~~~~g~~~~A~ 815 (902)
|+++++.. .. ...++..++..|.. |++++|++.|+++++. .|. ... ..++.+|...|++++|+
T Consensus 99 ~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 175 (307)
T 2ifu_A 99 IEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV--FENEERLRQAAELIGKASRLLVRQQKFDEAA 175 (307)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH--HHhCCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77766553 11 13567778888877 8888888888888752 221 112 67788888888888888
Q ss_pred HHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 816 EFMNLILES----GFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 816 ~~~~~~~~~----~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
..++++++. +..+. ...+..++.++...|++++|+..+++++
T Consensus 176 ~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 176 ASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888752 11111 1355666677777788888888888876
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.5e-08 Score=85.79 Aligned_cols=106 Identities=12% Similarity=0.071 Sum_probs=89.1
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHc
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCK 807 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~ 807 (902)
+...+..+.+.|++++|++.|+++++.+|.++.+|..++.+|.+.|++++|+..|+++++ +.|+... ..++.+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHH
Confidence 334445555555999999999999999999999999999999999999999999999999 4566554 899999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 048778 808 ERKYDDCLEFMNLILESGFVPS-FESHCTVIQG 839 (902)
Q Consensus 808 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 839 (902)
.|++++|++.++++++. .|+ ...+..+..+
T Consensus 94 ~~~~~~A~~~~~~al~l--~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV--DPSNEEAREGVRNC 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH--CcCCHHHHHHHHHh
Confidence 99999999999999985 674 4555555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.80 E-value=6.6e-08 Score=87.35 Aligned_cols=85 Identities=9% Similarity=-0.038 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|.+.|+++++.+|.++..|..++.+|...|++++|+..|+++++ +.|+... ..++.+|...|++++|+..++
T Consensus 51 ~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 51 RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128 (151)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888877 4455444 777788888888888888888
Q ss_pred HHHHcCCCCCH
Q 048778 820 LILESGFVPSF 830 (902)
Q Consensus 820 ~~~~~~~~p~~ 830 (902)
++++. .|+.
T Consensus 129 ~al~l--~~~~ 137 (151)
T 3gyz_A 129 LVIQH--SNDE 137 (151)
T ss_dssp HHHHH--CCCH
T ss_pred HHHHh--CCCH
Confidence 88764 4554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.80 E-value=6.7e-06 Score=90.64 Aligned_cols=392 Identities=13% Similarity=0.024 Sum_probs=197.7
Q ss_pred hcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCC-HHHH
Q 048778 174 KLD-LGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGND-LKEA 251 (902)
Q Consensus 174 ~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A 251 (902)
+.| +++.|..+|+++...- |. |+++.+..+|++.+.. .|++..|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 3667777777765431 21 7788888888887764 5677777777776666653 3556
Q ss_pred HHHHHHhhhcCCC-CCCHhhHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHH
Q 048778 252 FKVFDVMSKEASY-RPNSVTFTTLIHGLC----EVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLF 326 (902)
Q Consensus 252 ~~~~~~m~~~~~~-~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 326 (902)
..+|+.....-|. ..+...|...+..+. .+|+.+.+.++|++.... |.. .+..+-.. |
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~-------------Y 130 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKD-------------F 130 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHH-------------H
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHH-------------H
Confidence 6777776654342 235556666665433 235566777777777763 211 11111111 1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--C-----hHHHHHHHHHH
Q 048778 327 DEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQG--R-----IIAAFELLALM 399 (902)
Q Consensus 327 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m 399 (902)
..+... .+..+...++.-.. +.+..|..+++++...-...+...|...+..-...+ - .+.+..+|+++
T Consensus 131 ~~fE~~---~~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 131 ENFELE---LNKITGKKIVGDTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHHHH---HCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHH---hccccHHHHHHHHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 111111 01112222222211 233344444444332100012334444443321110 0 22344556665
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048778 400 EKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGF 479 (902)
Q Consensus 400 ~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 479 (902)
.... +-+...|...+..+.+.|+.++|..++++.... |....... .|....+.++. ++.+.+
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~-------- 267 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKR-------- 267 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHH--------
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHH--------
Confidence 5432 234555555566666666666666666666655 22221111 11111111111 111111
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 048778 480 TFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLC 559 (902)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 559 (902)
.+.. ...+.+ .. .. .......|...+....+.+..+.|..+|++. +.. ..+...|......-.
T Consensus 268 -------~~~~-~~~~~~-----~~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 268 -------KYSM-GEAESA-----EK-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp -------HTC-----------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred -------HHHh-hccchh-----hh-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 0000 000000 00 00 0012245666666666777888899999888 321 123334433222222
Q ss_pred h-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 560 K-ENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAE 638 (902)
Q Consensus 560 ~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 638 (902)
. .++.+.|..+|+...+.. +.+...+...++...+.|+.+.|..+|+.+. .....|...+.--...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 2 236889999999888743 2235556667777788899999999999873 25677888887777789999998
Q ss_pred HHHHHHHH
Q 048778 639 MLLFKMFD 646 (902)
Q Consensus 639 ~~~~~m~~ 646 (902)
.+++++..
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888763
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.77 E-value=9.2e-08 Score=97.54 Aligned_cols=192 Identities=9% Similarity=-0.028 Sum_probs=135.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchh
Q 048778 652 NHITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDY 730 (902)
Q Consensus 652 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (902)
+...+..+...+.+.|++++|+..++++++. .| +...|..+...+.+.|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~---------------------------- 52 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQ---------------------------- 52 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT----------------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhc----------------------------
Confidence 4567778888899999999999999998874 44 6778888888888888
Q ss_pred hhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHcc
Q 048778 731 ERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKE 808 (902)
Q Consensus 731 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~ 808 (902)
++++|...++++++.+|.+..++..++.+|...|++++|+..|+++++ ..|+... ...++....
T Consensus 53 -----------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~- 118 (281)
T 2c2l_A 53 -----------QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALR- 118 (281)
T ss_dssp -----------CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCCCSHHHHHHH-
T ss_pred -----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999987 4455422 222222221
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcc-hhHHHHHHHHhcC-CcHhHHHH
Q 048778 809 RKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEK-AAVLPYIEFLLTG-DELGKSID 886 (902)
Q Consensus 809 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~a~~ 886 (902)
..++..... ........+......+...+ .|++++|++.++++++.. |+. .....+...+.+. +.+++|.+
T Consensus 119 --~~~~~~~~~-~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~ 191 (281)
T 2c2l_A 119 --IAKKKRWNS-IEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGH--EDDGHIRAQQACIEAKHDKYMADMDE 191 (281)
T ss_dssp --HHHHHHHHH-HHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTT--SCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHH-HHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 122222222 22333344555555554443 689999999999876654 332 2333333334444 77888999
Q ss_pred HHHHHHhc
Q 048778 887 LLNLIDQV 894 (902)
Q Consensus 887 ~l~~~~~~ 894 (902)
+|+++.+.
T Consensus 192 ~f~~a~~~ 199 (281)
T 2c2l_A 192 LFSQVDEK 199 (281)
T ss_dssp HHHHSSCT
T ss_pred HHHhhhcc
Confidence 99877654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.6e-08 Score=89.36 Aligned_cols=111 Identities=9% Similarity=-0.037 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHc
Q 048778 747 FRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
...|+++++.+|.+...+..++..+...|++++|+..|++++.. .|+... ..++.+|...|++++|+..++++++.
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35677888888889999999999999999999999999999984 465544 88999999999999999999999975
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 825 GFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 825 ~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
.| +...+..++.+|...|++++|+..++++++...
T Consensus 85 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 85 --DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp --STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45 458888999999999999999999999877643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.76 E-value=8.8e-07 Score=91.07 Aligned_cols=151 Identities=8% Similarity=-0.000 Sum_probs=79.8
Q ss_pred cHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh-----H-HHHHHHHHccC
Q 048778 742 DVEHAFRLRDRIESCGGSTTD------FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA-----I-TSIIGCYCKER 809 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~-~~l~~~~~~~g 809 (902)
++++|.+.+++..+..+.++. .+..++..+...|++++|+..++++++.....+.. . ..++.+|...|
T Consensus 90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 169 (293)
T 3u3w_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC
Confidence 666666666666554432222 22235555555566666666666666532221111 2 55666666666
Q ss_pred ChHHHHHHHHHHHH----c-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----C-cchhHHHHHHHHhcC
Q 048778 810 KYDDCLEFMNLILE----S-GFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI----E-EKAAVLPYIEFLLTG 878 (902)
Q Consensus 810 ~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~ 878 (902)
++++|..+++++++ . +..+. ..++..++.+|.+.|++++|+.+++++++.... + -...+..++..+.+.
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 249 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL 249 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 66666666666652 1 11111 135566666666666666666666665543211 1 133455566666666
Q ss_pred Cc-HhHHHHHHHHHH
Q 048778 879 DE-LGKSIDLLNLID 892 (902)
Q Consensus 879 g~-~~~a~~~l~~~~ 892 (902)
|+ +++|++.+++..
T Consensus 250 g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 250 EYEEAEIEDAYKKAS 264 (293)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 63 466666665543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.74 E-value=9.2e-08 Score=99.17 Aligned_cols=197 Identities=9% Similarity=-0.065 Sum_probs=145.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCcc
Q 048778 630 QRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAS-TGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVL 708 (902)
Q Consensus 630 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 708 (902)
..|++++|.+++++..+.. +.. +.+ .+++++|...|.++ ...|...|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g------ 50 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAK------ 50 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTT------
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcC------
Confidence 3567888888888776531 111 122 47888888887765 23455666
Q ss_pred ccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHhcCCHHHHHH
Q 048778 709 SISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGG--S----TTDFYNFLVVELCRAGRIVEADR 782 (902)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~A~~ 782 (902)
++++|.+.|.++++..+ . -..+|..++..|...|++++|+.
T Consensus 51 ---------------------------------~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 51 ---------------------------------QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred ---------------------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999887752 1 24578999999999999999999
Q ss_pred HHHHHHHcCC---CchHh--H-HHHHHHHHccCChHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCCHHHHHH
Q 048778 783 IMKDIMKSGV---FPAKA--I-TSIIGCYCKERKYDDCLEFMNLILESGF---VP--SFESHCTVIQGLQSEGRNKQAKN 851 (902)
Q Consensus 783 ~~~~~~~~~~---~p~~~--~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~l~~~l~~~g~~~~A~~ 851 (902)
.|+++++... .+... . ..++.+|.. |++++|+..++++++... .+ ...++..++.+|...|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999876311 12222 2 788889988 999999999999985310 11 13678889999999999999999
Q ss_pred HHHHHHhCCCC----Cc-chhHHHHHHHHhcCCcHhHHHHHHHHHH
Q 048778 852 LVSDLFRYNGI----EE-KAAVLPYIEFLLTGDELGKSIDLLNLID 892 (902)
Q Consensus 852 ~~~~~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 892 (902)
.++++++.... +. ...+..++..+...|++++|+..+++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99998765221 11 2256666777888999999999999887
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.9e-07 Score=91.11 Aligned_cols=133 Identities=11% Similarity=-0.081 Sum_probs=105.1
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--HhH-HHHHHHHHccCCh
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA--KAI-TSIIGCYCKERKY 811 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~-~~l~~~~~~~g~~ 811 (902)
..+...|++++|.+.|+.+...+|.+. ....++..+.+.|++++|+..|+...... .|. ... ..++.++...|++
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCH
Confidence 344455599999999999998778777 88889999999999999999998765521 221 223 8889999999999
Q ss_pred HHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHH
Q 048778 812 DDCLEFMNLILESGFVPS--FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPY 871 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 871 (902)
++|+..+++.......|. .+.....+.++.+.|+.++|...|+++....+. ...+..|
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL 247 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHH
Confidence 999999999986433264 467788899999999999999999999877654 4444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3.2e-06 Score=86.84 Aligned_cols=162 Identities=10% Similarity=0.003 Sum_probs=121.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhh
Q 048778 659 LVRAHASTGRLDHAFKIVSFMVANG-CQLNSN----VYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERS 733 (902)
Q Consensus 659 l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (902)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------- 129 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV------------------------------- 129 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS-------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc-------------------------------
Confidence 4667888999999999999988632 112211 2223444455555
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHhH--HH
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCG--GST----TDFYNFLVVELCRAGRIVEADRIMKDIMKS-----GVFPAKAI--TS 800 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~--~~ 800 (902)
++++|...++++++.. .++ ..+++.++..|...|++++|+..|+++++. +..+.... ..
T Consensus 130 --------~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~n 201 (293)
T 3u3w_A 130 --------DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp --------CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 9999999999999864 223 337999999999999999999999999841 12233332 88
Q ss_pred HHHHHHccCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC
Q 048778 801 IIGCYCKERKYDDCLEFMNLILES----GFVPS-FESHCTVIQGLQSEGR-NKQAKNLVSDLFRY 859 (902)
Q Consensus 801 l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~l~~~g~-~~~A~~~~~~~~~~ 859 (902)
++.+|.+.|++++|+.+++++++. +..+. ...|..++.++.+.|+ +++|++.+++++..
T Consensus 202 lg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999999999999988842 22222 4788999999999995 79999999998644
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=7.9e-07 Score=86.41 Aligned_cols=126 Identities=11% Similarity=-0.073 Sum_probs=92.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhh
Q 048778 656 YSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSK 735 (902)
Q Consensus 656 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (902)
+..+...+...|++++|+..+++. +.|+...+..+...+...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g--------------------------------- 51 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILK--------------------------------- 51 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTT---------------------------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcC---------------------------------
Confidence 445666677778888888777766 3556777777777777777
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------------chHhH--H
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF--------------PAKAI--T 799 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------------p~~~~--~ 799 (902)
++++|.+.++++++.+|.+..+|..++..|...|++++|++.|+++.+.... |.... .
T Consensus 52 ------~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (213)
T 1hh8_A 52 ------NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLY 125 (213)
T ss_dssp ------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHH
T ss_pred ------CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHH
Confidence 8888888888888887888888888888888888888888888888773321 11112 7
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHc
Q 048778 800 SIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
.++.+|...|++++|...++++.+.
T Consensus 126 ~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 126 NIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777788888888888888887764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=6e-06 Score=84.60 Aligned_cols=183 Identities=10% Similarity=-0.018 Sum_probs=139.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-CHH
Q 048778 559 CKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAG-NIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQR-G-RFK 635 (902)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g-~~~ 635 (902)
.+.+..++|+++++.++..+. -+..+|+.--..+...| .++++++.++.++... +-+..+|+.-...+... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 334455678888888887542 25666777777777788 5999999999999875 66778888877777776 6 889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCc
Q 048778 636 EAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLD--------HAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGV 707 (902)
Q Consensus 636 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 707 (902)
+++.+++++++.. +-|...|+.-.-++.+.|.++ +++++++++++. -.-|...|+.....+.+.+....
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-dp~N~SAW~~R~~lL~~l~~~~~- 219 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-DGRNNSAWGWRWYLRVSRPGAET- 219 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHTTSTTCCC-
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcccccc-
Confidence 9999999998765 567788877776666666666 999999999985 24477888887777766651100
Q ss_pred cccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 048778 708 LSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRI 777 (902)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 777 (902)
....++++++.+++++..+|.|..+|+.+...+.+.|+.
T Consensus 220 -------------------------------~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 220 -------------------------------SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred -------------------------------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 001478999999999999999999999999888887764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.3e-06 Score=86.54 Aligned_cols=227 Identities=7% Similarity=0.001 Sum_probs=166.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-CHHH
Q 048778 595 RAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRG-RFKEAEMLLFKMFDLGVSPNHITYSILVRAHAST-G-RLDH 671 (902)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g-~~~~ 671 (902)
+.+..++|+++++.++..+ +-+...|+.--..+...| .+++++.+++.++... +-+..+|+.-..++.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3445578999999999874 556778888888888888 5999999999999875 56788888888877776 7 8999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHH
Q 048778 672 AFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRD 751 (902)
Q Consensus 672 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 751 (902)
++++++++++. -+-|...|+.-...+.+.+..+.. ....++++++.++
T Consensus 144 EL~~~~k~L~~-dpkNy~AW~~R~wvl~~l~~~~~~-------------------------------~~~~~~eELe~~~ 191 (349)
T 3q7a_A 144 EIEYIHGSLLP-DPKNYHTWAYLHWLYSHFSTLGRI-------------------------------SEAQWGSELDWCN 191 (349)
T ss_dssp HHHHHHHHTSS-CTTCHHHHHHHHHHHHHHHHTTCC-------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcccccc-------------------------------chhhHHHHHHHHH
Confidence 99999999864 233677777666555555511100 0014569999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCCh-----------
Q 048778 752 RIESCGGSTTDFYNFLVVELCRAGR-------IVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKY----------- 811 (902)
Q Consensus 752 ~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~----------- 811 (902)
++++.+|.|..+|+.....+.+.++ ++++++.+++++. ..|++.. ..+...+.+.|+.
T Consensus 192 k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~ 269 (349)
T 3q7a_A 192 EMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPY 269 (349)
T ss_dssp HHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGG
T ss_pred HHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCccccccccccc
Confidence 9999999999999999999998886 7899999999998 4566655 5556666665553
Q ss_pred ---------HHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 812 ---------DDCLEFMNLILESG-----FVPSFESHCTVIQGLQSEGRNKQAKNLVSDLF 857 (902)
Q Consensus 812 ---------~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 857 (902)
.+.......+...+ -.+++..+..++++|...|+.++|.++++.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 23333333333211 12456788889999999999999999999975
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-07 Score=89.81 Aligned_cols=156 Identities=12% Similarity=-0.031 Sum_probs=117.7
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCchHhH--HHHHHHHHccCChH
Q 048778 739 REMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS----GVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
..|++++|.+.++.+....+....++..++..+...|++++|+..++++++. +..+.... ..++..|...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3569999999666665433467889999999999999999999999998762 12233333 88899999999999
Q ss_pred HHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCc--chhHHHHHHHHhcCCcH
Q 048778 813 DCLEFMNLILES----GFVP--SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG---IEE--KAAVLPYIEFLLTGDEL 881 (902)
Q Consensus 813 ~A~~~~~~~~~~----~~~p--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~ 881 (902)
+|...+++..+. +-.| ....+..++.++...|++++|...++++++... .+. ...+..++..+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 999999998742 2122 135678889999999999999999999875421 111 22356778889999999
Q ss_pred hHHHHHHHHHHhc
Q 048778 882 GKSIDLLNLIDQV 894 (902)
Q Consensus 882 ~~a~~~l~~~~~~ 894 (902)
++|.+.+++..+.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.9e-08 Score=95.50 Aligned_cols=132 Identities=8% Similarity=-0.054 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 048778 763 FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPS--FESHCTVIQG 839 (902)
Q Consensus 763 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~ 839 (902)
.+..++..+...|++++|.++|+.+... .|+... ..++..+.+.|++++|+..++...+.. .|. ...+..++.+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 3455788899999999999999999874 466656 888889999999999999998665531 222 3478889999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCc--chhHHHHHHHHhcCCcHhHHHHHHHHHHhcCcc
Q 048778 840 LQSEGRNKQAKNLVSDLFRYNGIEE--KAAVLPYIEFLLTGDELGKSIDLLNLIDQVHYR 897 (902)
Q Consensus 840 l~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~~ 897 (902)
+...|++++|+..|+++...+..|. ...+..++.++.+.|+.++|...|+++......
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 9999999999999999876554243 345677888999999999999999999887543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-08 Score=106.11 Aligned_cols=146 Identities=12% Similarity=-0.048 Sum_probs=106.1
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH----------------hH-HHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK----------------AI-TSIIGC 804 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----------------~~-~~l~~~ 804 (902)
++++|.+.++...+..|.+...|..++..|.+.|++++|+..|+++++.. |+. .. ..++.+
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555556677788888888888888888888888888743 443 23 778888
Q ss_pred HHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhH
Q 048778 805 YCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGK 883 (902)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 883 (902)
|.+.|++++|+..++++++. .| +...|..++.+|...|++++|+..++++++..+. +...+..+...+.+.|++++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888875 34 4577788888888888888888888888776543 34566677777788888887
Q ss_pred H-HHHHHHHH
Q 048778 884 S-IDLLNLID 892 (902)
Q Consensus 884 a-~~~l~~~~ 892 (902)
| .+.++.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7 44555554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-06 Score=89.62 Aligned_cols=165 Identities=8% Similarity=-0.016 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcc
Q 048778 655 TYSILVRAHASTGRLDHAFKIVSFMVANGCQLNS------NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDD 728 (902)
Q Consensus 655 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (902)
.+...+..+...|++++|.+.+++.++.... .. ..+..+...+...|
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------------------- 129 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKV-------------------------- 129 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSS--------------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCC--------------------------
Confidence 3444566677778888888887777664211 11 11222333444445
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCC-chH--
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGST------TDFYNFLVVELCRAGRIVEADRIMKDIM---KSGVF-PAK-- 796 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~-p~~-- 796 (902)
++++|...++++++..+.. ..+++.++..|...|++++|+..|++++ +.... +..
T Consensus 130 -------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~ 196 (293)
T 2qfc_A 130 -------------DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp -------------CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred -------------CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchH
Confidence 8999999999988654221 4588999999999999999999999987 32211 111
Q ss_pred hH-HHHHHHHHccCChHHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHHhcCCHHHH-HHHHHHHHhC
Q 048778 797 AI-TSIIGCYCKERKYDDCLEFMNLILESG----FVPS-FESHCTVIQGLQSEGRNKQA-KNLVSDLFRY 859 (902)
Q Consensus 797 ~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~~~l~~~l~~~g~~~~A-~~~~~~~~~~ 859 (902)
.. ..++.+|...|++++|+.+++++++.. .... ..+|..++.+|.+.|++++| ...+++++..
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 23 889999999999999999999987531 1111 47788899999999999999 7878887543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.7e-07 Score=85.49 Aligned_cols=118 Identities=9% Similarity=0.028 Sum_probs=78.8
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
..+...|++++|...|+++++..|.+..++..++..+...|++++|+..++++++.. |+... ..++.+|...|+++
T Consensus 21 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~ 98 (166)
T 1a17_A 21 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFR 98 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhccHH
Confidence 333444477777777777777777777777777777777777777777777777743 43333 67777777777777
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 048778 813 DCLEFMNLILESGFVP-SFESHCT--VIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 813 ~A~~~~~~~~~~~~~p-~~~~~~~--l~~~l~~~g~~~~A~~~~~~~ 856 (902)
+|...++++.+. .| +...+.. .+..+...|++++|+..+++.
T Consensus 99 ~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 99 AALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 777777777764 23 3334433 333366667777777777664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-07 Score=89.29 Aligned_cols=123 Identities=8% Similarity=0.053 Sum_probs=103.9
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHH-HHccCCh--
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGC-YCKERKY-- 811 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~-~~~~g~~-- 811 (902)
+...|++++|...++++++.+|.+...|..++..|...|++++|+..|+++++.. |+... ..++.+ |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 4566799999999999999999999999999999999999999999999999844 54443 788888 7899998
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048778 812 DDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE 863 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 863 (902)
++|...++++++. .| +...+..++.++...|++++|+..++++++..+..
T Consensus 98 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 9999999999975 45 46888899999999999999999999998876543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-06 Score=83.95 Aligned_cols=130 Identities=6% Similarity=-0.121 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 621 YTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVS 700 (902)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 700 (902)
+..+...+...|++++|+..+++. +.|+...+..+..+|...|++++|+..+++.++.. +.+...+..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 334455556666666666666554 24456666666666666666666666666666531 2344556666666666
Q ss_pred cCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCH----------------HHH
Q 048778 701 SNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTT----------------DFY 764 (902)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~ 764 (902)
.| ++++|.+.|+++++..|.+. .++
T Consensus 84 ~~---------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (213)
T 1hh8_A 84 TE---------------------------------------KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL 124 (213)
T ss_dssp TT---------------------------------------CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHH
T ss_pred cc---------------------------------------cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHH
Confidence 66 66777777777666555444 889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 765 NFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 765 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
..++.+|...|++++|.+.|+++++. .|+.
T Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 125 YNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 99999999999999999999999984 4543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-06 Score=81.48 Aligned_cols=129 Identities=11% Similarity=-0.022 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhh
Q 048778 654 ITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERS 733 (902)
Q Consensus 654 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (902)
..+..+...+...|++++|...+++.++. .+.+..++..+...+...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~~~------------------------------- 61 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTE------------------------------- 61 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTT-------------------------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcC-------------------------------
Confidence 34555666667777777777777777653 1234566666666666666
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCCh
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKY 811 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~ 811 (902)
++++|.+.++++++.+|.+..+|..++..+...|++++|+..++++++..+...... ..++..+...|++
T Consensus 62 --------~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 133 (166)
T 1a17_A 62 --------CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 133 (166)
T ss_dssp --------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777776433222222 3333346667777
Q ss_pred HHHHHHHHHHH
Q 048778 812 DDCLEFMNLIL 822 (902)
Q Consensus 812 ~~A~~~~~~~~ 822 (902)
++|+..+++..
T Consensus 134 ~~A~~~~~~~~ 144 (166)
T 1a17_A 134 ERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHcccchH
Confidence 77777776654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.7e-07 Score=78.80 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=51.2
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh--------H-HHHHHHHHc
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA--------I-TSIIGCYCK 807 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--------~-~~l~~~~~~ 807 (902)
+.+.|++++|++.|+++++.+|.++.+|..++.+|...|++++|++.++++++ +.|+.. . ..++.+|..
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~lg~~~~~ 95 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKAMSRAGNAFQK 95 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHHHHHHHH
Confidence 33333777777777777777777777777777777777777777777777665 223221 1 344445555
Q ss_pred cCChHHHHHHHHHHHH
Q 048778 808 ERKYDDCLEFMNLILE 823 (902)
Q Consensus 808 ~g~~~~A~~~~~~~~~ 823 (902)
.|++++|++.+++.++
T Consensus 96 ~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 96 QNDLSLAVQWFHRSLS 111 (127)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 5555555555555544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.6e-05 Score=79.64 Aligned_cols=232 Identities=9% Similarity=0.018 Sum_probs=149.5
Q ss_pred cCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 561 ENKLK-EEYAMFGKILKFGLVPSVVTYTILVDGLFRAGN----------IALAMSMIEVMKLAGCPPNVHTYTVIINGLC 629 (902)
Q Consensus 561 ~g~~~-~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 629 (902)
.|.++ +|+.+++.++..+. -+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-...+.
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 42 AGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 34433 56666666665321 133445443333333222 678888888888764 668888888877777
Q ss_pred hcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCC
Q 048778 630 QRG--RFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGR-LDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASG 706 (902)
Q Consensus 630 ~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 706 (902)
..+ .+++++.+++++.+.. +-|...|+.-..++...|. ++++++.++++++. -+-|...|+.....+.+......
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhhhccc
Confidence 777 4899999999999875 6678888888888888888 58999999999985 24477788777666655531100
Q ss_pred ccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-----------C
Q 048778 707 VLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRA-----------G 775 (902)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g 775 (902)
.- ...-...+.++++++.+.+++..+|.|..+|+.+...+.+. +
T Consensus 198 ~~-------------------------~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~ 252 (331)
T 3dss_A 198 SG-------------------------PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKST 252 (331)
T ss_dssp ------------------------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHH
T ss_pred cc-------------------------cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHH
Confidence 00 00000113789999999999999999999999888777666 3
Q ss_pred CHHHHHHHHHHHHHcCCCchHhH--HHHHH---HHHccCChHHHHHHHHHHHH
Q 048778 776 RIVEADRIMKDIMKSGVFPAKAI--TSIIG---CYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 776 ~~~~A~~~~~~~~~~~~~p~~~~--~~l~~---~~~~~g~~~~A~~~~~~~~~ 823 (902)
.++++++.++++++ ..|+... ..++. .....|..+++...+.++.+
T Consensus 253 ~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 253 VLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 45666666666666 3455433 11111 11123445555555555554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.4e-07 Score=83.32 Aligned_cols=109 Identities=11% Similarity=-0.032 Sum_probs=85.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcC
Q 048778 748 RLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESG 825 (902)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 825 (902)
..|+++++.+|.+...+..++..+...|++++|+..|++++.. .|+... ..++.+|...|++++|+..++++++.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 81 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM- 81 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 3556666667778888888888999999999999999998884 454444 78888889999999999999998875
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 826 FVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 826 ~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
.| ++..+..++.+|...|++++|+..++++++..
T Consensus 82 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 82 -DINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp -CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34 45778888889999999999999999887664
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.1e-06 Score=85.29 Aligned_cols=162 Identities=8% Similarity=-0.029 Sum_probs=116.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--H
Q 048778 620 TYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNH------ITYSILVRAHASTGRLDHAFKIVSFMVANGC---QLN--S 688 (902)
Q Consensus 620 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~ 688 (902)
.+...+..+...|++++|.+.+++..+.. +... ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34445566677777777777777776542 1121 2234456667778888999888888875311 111 3
Q ss_pred HHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc---CCCC----H
Q 048778 689 NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC---GGST----T 761 (902)
Q Consensus 689 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~----~ 761 (902)
.+++.+...|...| ++++|...|+++++. .+.+ .
T Consensus 156 ~~~~~lg~~y~~~~---------------------------------------~~~~A~~~~~kal~~~~~~~~~~~~~~ 196 (293)
T 2qfc_A 156 YIENAIANIYAENG---------------------------------------YLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHHHHTT---------------------------------------CHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHHcC---------------------------------------CHHHHHHHHHHHHHHHHhcCccccchH
Confidence 46777777777777 999999999988843 3432 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-------HhH-HHHHHHHHccCChHHH-HHHHHHHHH
Q 048778 762 DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA-------KAI-TSIIGCYCKERKYDDC-LEFMNLILE 823 (902)
Q Consensus 762 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~-~~l~~~~~~~g~~~~A-~~~~~~~~~ 823 (902)
.++..++..|...|++++|+..++++++.. ++ ... ..++.+|...|++++| ..+++++..
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~--~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEIS--CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 688999999999999999999999997632 22 233 8899999999999999 787888764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-05 Score=80.06 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGR-IVEADRIMKDIMK 789 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 789 (902)
++++..+++++++.+|.|..+|+.-...+...|. ++++++.++++++
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 4444445555555445555555544444444444 3444444444444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=8.2e-07 Score=90.42 Aligned_cols=192 Identities=10% Similarity=-0.025 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 582 SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44566667777777788888888877777653 4466777777777788888888888887777653 445677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 662 AHASTGRLDHAFKIVSFMVANGCQLNS-NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 662 ~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
+|...|++++|...+++..+. .|+. ..+...+....
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~----------------------------------------- 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSAL----------------------------------------- 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHH-----------------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHH-----------------------------------------
Confidence 888888888888888777652 2211 00000110000
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHcc-CChHHHHHH
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKE-RKYDDCLEF 817 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~-g~~~~A~~~ 817 (902)
...++...........+.+......+...+ .|++++|++.++++++ ..|+... ..+...+... +.+++|.++
T Consensus 118 -~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 192 (281)
T 2c2l_A 118 -RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDEL 192 (281)
T ss_dssp -HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 111111111122222355555555554433 5677777777777766 4455444 4554444444 566777777
Q ss_pred HHHHHH
Q 048778 818 MNLILE 823 (902)
Q Consensus 818 ~~~~~~ 823 (902)
|.++.+
T Consensus 193 f~~a~~ 198 (281)
T 2c2l_A 193 FSQVDE 198 (281)
T ss_dssp HHHSSC
T ss_pred HHhhhc
Confidence 776653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-06 Score=84.02 Aligned_cols=118 Identities=9% Similarity=-0.146 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC-Cc-hHhH--HHHHHHHHcc
Q 048778 742 DVEHAFRLRDRIESC------GGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS---GV-FP-AKAI--TSIIGCYCKE 808 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~-~p-~~~~--~~l~~~~~~~ 808 (902)
++++|...++++++. .+....++..++..|...|++++|++.++++++. .. .+ .... ..++.++...
T Consensus 41 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~ 120 (203)
T 3gw4_A 41 RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF 120 (203)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh
Confidence 556666555555552 1334556777777888888888888887777653 11 22 1122 6777778888
Q ss_pred CChHHHHHHHHHHHHc---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 809 RKYDDCLEFMNLILES---GFVPS--FESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 809 g~~~~A~~~~~~~~~~---~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
|++++|...+++..+. .-.+. ..++..++.++...|++++|...++++++.
T Consensus 121 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 121 GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8888888888877631 00111 244567788888888888888888887544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=6.2e-07 Score=93.98 Aligned_cols=122 Identities=11% Similarity=0.013 Sum_probs=104.7
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGST---------------TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
..+..+.+.|++++|...|+++++..|.+ ..+|..++.+|.+.|++++|+..++++++. .|+.
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~ 229 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNN 229 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc
Confidence 34444555559999999999999999887 689999999999999999999999999994 5655
Q ss_pred hH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 048778 797 AI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQA-KNLVSDLF 857 (902)
Q Consensus 797 ~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A-~~~~~~~~ 857 (902)
.. ..++.+|...|++++|+..++++++. .| +...+..++.++.+.|+.++| ..++++|+
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 89999999999999999999999985 56 458888999999999999999 55777765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-06 Score=76.51 Aligned_cols=48 Identities=8% Similarity=0.014 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|.+.++++++..|.+...+..++..+...|++++|+..++++.+
T Consensus 65 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 65 EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555455555555555555555555555555555544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.6e-07 Score=83.56 Aligned_cols=80 Identities=11% Similarity=-0.059 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|...|+++++.+|.++..|..++.+|...|++++|+..|++++. +.|+... ..++.+|...|++++|...++
T Consensus 36 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 36 XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAECLLQXGELAEAESGLF 113 (148)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666655 2343333 555666666666666666666
Q ss_pred HHHH
Q 048778 820 LILE 823 (902)
Q Consensus 820 ~~~~ 823 (902)
++++
T Consensus 114 ~al~ 117 (148)
T 2vgx_A 114 LAQE 117 (148)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.7e-07 Score=84.42 Aligned_cols=119 Identities=9% Similarity=0.057 Sum_probs=77.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCcCCcc
Q 048778 630 QRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAG-LVSSNKASGVL 708 (902)
Q Consensus 630 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~ 708 (902)
..|++++|+..+++..+.. +.+...|..+..+|...|++++|...++++.+.. +.+...+..+... +...|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~------ 93 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQAS------ 93 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTT------
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcC------
Confidence 4566677777777666543 4456667777777777777777777777776531 2245555556555 55555
Q ss_pred ccccccCCCCCCCCCcCCcchhhhhhhhhhhhccH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 709 SISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDV--EHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
++ ++|...++++++.+|.+..++..++..|...|++++|+..|++
T Consensus 94 ---------------------------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 94 ---------------------------------QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp ---------------------------------TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------------------------CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 65 7777777777777777777777777777777777777777777
Q ss_pred HHH
Q 048778 787 IMK 789 (902)
Q Consensus 787 ~~~ 789 (902)
+++
T Consensus 141 al~ 143 (177)
T 2e2e_A 141 VMD 143 (177)
T ss_dssp HHH
T ss_pred HHh
Confidence 776
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-07 Score=91.36 Aligned_cols=149 Identities=12% Similarity=-0.037 Sum_probs=96.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-----------------hH-HHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK-----------------AI-TSIIG 803 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----------------~~-~~l~~ 803 (902)
++++|.+.++...+..+.....+..++..+...|++++|+..|+++++.. |+. .. ..++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 19 FQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp ---CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 44444444433222223345567778888888899999999998888733 322 23 77888
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHh
Q 048778 804 CYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELG 882 (902)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 882 (902)
+|...|++++|+..++++++. .| +...+..++.+|...|++++|+..++++++..+. +...+..+...+...|+.+
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHH
Confidence 888999999999999988875 34 4678888888898999999999999998777543 3455666777777777777
Q ss_pred HHH-HHHHHHHhcC
Q 048778 883 KSI-DLLNLIDQVH 895 (902)
Q Consensus 883 ~a~-~~l~~~~~~~ 895 (902)
++. ..++.|..+|
T Consensus 174 ~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 174 KKDKLTFGGMFDKG 187 (198)
T ss_dssp C-------------
T ss_pred HHHHHHHHHHhccc
Confidence 766 5555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.8e-07 Score=79.97 Aligned_cols=102 Identities=12% Similarity=0.106 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcC--CCCC----HH
Q 048778 760 TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESG--FVPS----FE 831 (902)
Q Consensus 760 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~ 831 (902)
...++..|+..+.+.|++++|++.|+++++ +.|+... ..++.+|...|++++|+..++++++.. ..++ ..
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 355788899999999999999999999999 5576665 889999999999999999999998631 1111 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048778 832 SHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE 863 (902)
Q Consensus 832 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 863 (902)
+|..++.++...|++++|++.++++++....|
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 67788899999999999999999998765443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=76.93 Aligned_cols=88 Identities=13% Similarity=0.082 Sum_probs=57.7
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCCh
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKY 811 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~ 811 (902)
+..+.+.|++++|...|+++++.+|.+...|..++.+|...|++++|+..++++++. .|+... ..++.+|...|++
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~ 88 (126)
T 3upv_A 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEY 88 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhCH
Confidence 334444447777777777777777777777777777777777777777777777663 344333 6666666677777
Q ss_pred HHHHHHHHHHHH
Q 048778 812 DDCLEFMNLILE 823 (902)
Q Consensus 812 ~~A~~~~~~~~~ 823 (902)
++|...++++++
T Consensus 89 ~~A~~~~~~al~ 100 (126)
T 3upv_A 89 ASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766665
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.50 E-value=4.2e-06 Score=72.65 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 621 YTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMV 680 (902)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 680 (902)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333344444444444444444443321 2233334444444444444444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.7e-06 Score=75.00 Aligned_cols=119 Identities=12% Similarity=-0.029 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 617 NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLA 696 (902)
Q Consensus 617 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 696 (902)
+...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.++++.+. .+.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-EPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 44566777777777777777777777777653 345677777777777778888888888777764 2335566777777
Q ss_pred HHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 048778 697 GLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGR 776 (902)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 776 (902)
.+...| ++++|.+.++++++.+|.+...+..++..+...|+
T Consensus 93 ~~~~~~---------------------------------------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMK---------------------------------------DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTT---------------------------------------CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHh---------------------------------------hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 777777 88888888888887777777777777777766653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.49 E-value=4.6e-06 Score=72.42 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|...++++.+..|.+..++..++..+...|++++|...++++.+
T Consensus 58 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 58 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555555555555555455555555555555555555555555555544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=3.2e-06 Score=74.15 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|...++++++..|.+...+..++..+...|++++|+..++++.+.. |+... ..++.+|...|++++|...++
T Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 104 (131)
T 2vyi_A 27 NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLALSSLNKHVEAVAYYK 104 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444421 22111 444444444444444444444
Q ss_pred HHHH
Q 048778 820 LILE 823 (902)
Q Consensus 820 ~~~~ 823 (902)
++.+
T Consensus 105 ~~~~ 108 (131)
T 2vyi_A 105 KALE 108 (131)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.4e-06 Score=74.00 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 621 YTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
+..+...+...|++++|+..+++..... +.+...+..+..++...|++++|.+.+++..+
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 3334444444444444444444444321 22333444444444444444444444444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=9e-07 Score=79.46 Aligned_cols=89 Identities=8% Similarity=-0.143 Sum_probs=78.9
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCCh
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKY 811 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~ 811 (902)
+..+.+.|++++|...|+++++.+|.+...|..++.+|...|++++|+..|+++++. .|+... ..++.+|...|++
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHcCCH
Confidence 334444449999999999999999999999999999999999999999999999994 465544 8899999999999
Q ss_pred HHHHHHHHHHHHc
Q 048778 812 DDCLEFMNLILES 824 (902)
Q Consensus 812 ~~A~~~~~~~~~~ 824 (902)
++|...++++++.
T Consensus 103 ~~A~~~~~~al~~ 115 (142)
T 2xcb_A 103 DGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999864
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.1e-06 Score=73.96 Aligned_cols=98 Identities=10% Similarity=-0.028 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhh
Q 048778 653 HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYER 732 (902)
Q Consensus 653 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (902)
...+..+...+.+.|++++|+..+++.++. .+.+...|..+..++.+.|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~~------------------------------ 52 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR-APEDARGYSNRAAALAKLM------------------------------ 52 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT------------------------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhc------------------------------
Confidence 345677778888888999999888888874 2336677888888888888
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
++++|...++++++.+|.+..+|..++.++...|++++|+..|+++++.
T Consensus 53 ---------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 53 ---------SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp ---------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 9999999999999998999999999999999999999999999998873
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.43 E-value=7.4e-07 Score=98.18 Aligned_cols=121 Identities=9% Similarity=0.035 Sum_probs=100.8
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHc
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCK 807 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~ 807 (902)
+...+..+.+.|++++|.+.|+++++.+|.+..+|..++.+|.+.|++++|++.++++++ ..|+... ..++.+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 444556677788999999999999999999999999999999999999999999999999 4566554 899999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH--HHhcCCHHHHHHHHH
Q 048778 808 ERKYDDCLEFMNLILESGFVPS-FESHCTVIQG--LQSEGRNKQAKNLVS 854 (902)
Q Consensus 808 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~--l~~~g~~~~A~~~~~ 854 (902)
.|++++|.+.++++++. .|+ ...+..++.+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999975 453 4566667666 888999999999999
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=7.8e-07 Score=77.12 Aligned_cols=94 Identities=10% Similarity=0.001 Sum_probs=72.5
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYC 806 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~ 806 (902)
.+...+..+.+.|++++|...|+++++.+|.+..+|..++.++...|++++|+..|+++++ +.|+... ..++.+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3455566677777888888888888888888888888888888888888888888888887 4454443 77777888
Q ss_pred ccCChHHHHHHHHHHHHc
Q 048778 807 KERKYDDCLEFMNLILES 824 (902)
Q Consensus 807 ~~g~~~~A~~~~~~~~~~ 824 (902)
..|++++|+..++++++.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877753
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.9e-06 Score=72.05 Aligned_cols=58 Identities=9% Similarity=0.020 Sum_probs=23.8
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
..+..+...|++++|...++++++..|.+...|..++..+...|++++|+..++++++
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3333334444444444444444444333444444444444444444444444444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.9e-06 Score=74.57 Aligned_cols=79 Identities=9% Similarity=0.004 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|...|+++++.+|.+..+|..++.++...|++++|+..++++++. .|+... ..++.+|...|++++|...++
T Consensus 24 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEMESYDEAIANLQ 101 (137)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555542 232222 444555555555555555555
Q ss_pred HHH
Q 048778 820 LIL 822 (902)
Q Consensus 820 ~~~ 822 (902)
+++
T Consensus 102 ~a~ 104 (137)
T 3q49_B 102 RAY 104 (137)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.5e-06 Score=71.56 Aligned_cols=104 Identities=11% Similarity=0.079 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC---CHHHH
Q 048778 757 GGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLILESGFVP---SFESH 833 (902)
Q Consensus 757 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~ 833 (902)
+|.+...+..++..+...|++++|+..++++++...........++.+|...|++++|...++++.+. .| +...+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHH
Confidence 36778889999999999999999999999999854332222288999999999999999999999985 34 46888
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhCCCC
Q 048778 834 CTVIQGLQSE-GRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 834 ~~l~~~l~~~-g~~~~A~~~~~~~~~~~~~ 862 (902)
..++.++... |++++|++.++++++....
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999999999 9999999999999877644
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.3e-06 Score=77.99 Aligned_cols=94 Identities=10% Similarity=0.015 Sum_probs=76.8
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYC 806 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~ 806 (902)
.+...+..+.+.|++++|++.|+++++.+|.+...|..++.+|...|++++|+..|+++++. .|+... ..++.+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34444455555559999999999999998989999999999999999999999999999884 455444 88888999
Q ss_pred ccCChHHHHHHHHHHHHc
Q 048778 807 KERKYDDCLEFMNLILES 824 (902)
Q Consensus 807 ~~g~~~~A~~~~~~~~~~ 824 (902)
..|++++|...++++++.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 999999999999998864
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.1e-06 Score=77.30 Aligned_cols=101 Identities=13% Similarity=0.022 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHH
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHC 834 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 834 (902)
+.+...|..++..+...|++++|+..|+++++. .|+... ..++.+|...|++++|+..++++++. .| +...|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 83 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWS 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 456778999999999999999999999999994 465444 89999999999999999999999985 45 468899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 835 TVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 835 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
.++.+|...|++++|+..++++++....
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999877544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=9.1e-06 Score=69.64 Aligned_cols=80 Identities=8% Similarity=0.024 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
++++|...++++++..|.+...+..++..+...|++++|...++++.+.. |+... ..++.+|...|++++|...++
T Consensus 19 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNRFEEAKRTYE 96 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555422 22221 444445555555555555555
Q ss_pred HHHH
Q 048778 820 LILE 823 (902)
Q Consensus 820 ~~~~ 823 (902)
++.+
T Consensus 97 ~~~~ 100 (118)
T 1elw_A 97 EGLK 100 (118)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=5.1e-06 Score=79.53 Aligned_cols=126 Identities=10% Similarity=-0.039 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----------------HHHHHHHHHHHHhcCCcCCccccccccCC
Q 048778 654 ITYSILVRAHASTGRLDHAFKIVSFMVANGCQL-N----------------SNVYSALLAGLVSSNKASGVLSISTSCHS 716 (902)
Q Consensus 654 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~----------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 716 (902)
..+..+...+...|++++|+..+++.++. .| + ...+..+..++...|
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------------- 102 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK-------------- 102 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc--------------
Confidence 34555666666667777777777766652 11 1 145555666666666
Q ss_pred CCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 717 DAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
++++|...++++++.+|.+..++..++.+|...|++++|+..|+++++. .|+.
T Consensus 103 -------------------------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 155 (198)
T 2fbn_A 103 -------------------------DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNN 155 (198)
T ss_dssp -------------------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTC
T ss_pred -------------------------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCc
Confidence 8888888888888888888888888888888888888888888888774 3444
Q ss_pred hH--HHHHHHHHccCChHHHH-HHHHHHH
Q 048778 797 AI--TSIIGCYCKERKYDDCL-EFMNLIL 822 (902)
Q Consensus 797 ~~--~~l~~~~~~~g~~~~A~-~~~~~~~ 822 (902)
.. ..+..++...++.+++. ..+..+.
T Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 156 LDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 66666666666666655 4444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-05 Score=68.37 Aligned_cols=97 Identities=19% Similarity=0.083 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhh
Q 048778 653 HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYER 732 (902)
Q Consensus 653 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (902)
...+..++..+...|++++|...+++..+. .+.+...+..+...+...|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~------------------------------ 52 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKG------------------------------ 52 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHT------------------------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHhhc------------------------------
Confidence 344555666666667777777777666653 1224555566666666666
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|...++++++.+|.+...+..++..+...|++++|.+.++++.+
T Consensus 53 ---------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 53 ---------DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp ---------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ---------cHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777676777777777777777777777777777766
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.3e-07 Score=100.62 Aligned_cols=139 Identities=15% Similarity=0.047 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH----------------hH-HHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK----------------AI-TSIIGC 804 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----------------~~-~~l~~~ 804 (902)
++++|...++...+..|.....|..++..|.+.|++++|+..|+++++. .|+. .. ..++.+
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333455556666677777777777777777776653 2332 22 566666
Q ss_pred HHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhH
Q 048778 805 YCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGK 883 (902)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 883 (902)
|.+.|++++|+..++++++. .| +...|..++.+|...|++++|+..|+++++..+. +...+..+...+.+.|++++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777654 33 3466666667777777777777777776655432 23445556666666666665
Q ss_pred HH
Q 048778 884 SI 885 (902)
Q Consensus 884 a~ 885 (902)
+.
T Consensus 404 a~ 405 (457)
T 1kt0_A 404 RD 405 (457)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.31 E-value=8.3e-06 Score=72.41 Aligned_cols=101 Identities=13% Similarity=-0.018 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcch
Q 048778 650 SPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDD 729 (902)
Q Consensus 650 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (902)
+.+...+..+...+...|++++|...+++.++.. +.+...+..+...+...|
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~--------------------------- 57 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQ--------------------------- 57 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT---------------------------
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhc---------------------------
Confidence 3467788888888889999999999998888742 335677888888888888
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
++++|...++++++.+|.+..+|..++.+|...|++++|+..|+++++.
T Consensus 58 ------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 58 ------------QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp ------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999873
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.30 E-value=4.5e-06 Score=73.22 Aligned_cols=80 Identities=19% Similarity=0.313 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--------HhH-HHHHHHHHccCChH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA--------KAI-TSIIGCYCKERKYD 812 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~~-~~l~~~~~~~g~~~ 812 (902)
++++|...++++++..|.+...+..++..|...|++++|+..++++.+.. |+ ... ..++.+|...|+++
T Consensus 19 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~ 96 (131)
T 1elr_A 19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--RENREDYRQIAKAYARIGNSYFKEEKYK 96 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--cccchhHHHHHHHHHHHHHHHHHhccHH
Confidence 66666666666666666666666666666666666666666666665522 22 111 44555555555555
Q ss_pred HHHHHHHHHHH
Q 048778 813 DCLEFMNLILE 823 (902)
Q Consensus 813 ~A~~~~~~~~~ 823 (902)
+|...++++.+
T Consensus 97 ~A~~~~~~~~~ 107 (131)
T 1elr_A 97 DAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=5.2e-06 Score=71.81 Aligned_cols=98 Identities=8% Similarity=-0.069 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhh
Q 048778 655 TYSILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERS 733 (902)
Q Consensus 655 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (902)
.+..+...+.+.|++++|+..+++.++. .| +...|..+...+...|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g------------------------------- 65 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENE------------------------------- 65 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTT-------------------------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcC-------------------------------
Confidence 3456677888999999999999999874 44 6778888888888888
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA 795 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 795 (902)
++++|+..|+++++.+|.+..++..++..|...|++++|+..++++++ ..|+
T Consensus 66 --------~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~ 117 (121)
T 1hxi_A 66 --------KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL--SQPQ 117 (121)
T ss_dssp --------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred --------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcC
Confidence 999999999999999999999999999999999999999999999987 4454
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.7e-05 Score=71.41 Aligned_cols=96 Identities=10% Similarity=-0.028 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcc
Q 048778 653 HITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN----SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDD 728 (902)
Q Consensus 653 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (902)
...+..+...+...|++++|.+.+++.++ ..|+ ...+..+...+...+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~-------------------------- 79 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLE-------------------------- 79 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTT--------------------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHc--------------------------
Confidence 44455555555555555555555555554 2333 344444555555555
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|...++++++..|.+...+..++.+|...|++++|...|+++++
T Consensus 80 -------------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 80 -------------DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp -------------CHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666655555566666666666666666666666666655
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-05 Score=69.51 Aligned_cols=92 Identities=9% Similarity=-0.035 Sum_probs=54.5
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--HhH-HHHHHHHH
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTT---DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPA--KAI-TSIIGCYC 806 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~-~~l~~~~~ 806 (902)
.+..+...|++++|.+.|+++++..|.+. .++..++.++...|++++|+..|+++++..+... ... ..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34444555566666666666666665555 5666666666666666666666666666332211 111 55566666
Q ss_pred ccCChHHHHHHHHHHHHc
Q 048778 807 KERKYDDCLEFMNLILES 824 (902)
Q Consensus 807 ~~g~~~~A~~~~~~~~~~ 824 (902)
..|++++|...++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666666653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.26 E-value=5.7e-06 Score=73.60 Aligned_cols=100 Identities=13% Similarity=0.087 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCCcCCccccccccCCCCCCC
Q 048778 655 TYSILVRAHASTGRLDHAFKIVSFMVANGCQLN-------------SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSS 721 (902)
Q Consensus 655 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (902)
.+......+.+.|++++|+..|++.++. .|+ ...|..+..++.+.|
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg------------------- 71 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLR------------------- 71 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCC-------------------
Confidence 3445566667777777777777777762 333 226666777777777
Q ss_pred CCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc-------CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 722 RLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC-------GGSTTDFY----NFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
++++|+..++++++. +|.+..+| +..+.++...|++++|+..|+++++
T Consensus 72 --------------------r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle- 130 (159)
T 2hr2_A 72 --------------------SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE- 130 (159)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred --------------------CHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 999999999999999 99999999 9999999999999999999999998
Q ss_pred CCCchHh
Q 048778 791 GVFPAKA 797 (902)
Q Consensus 791 ~~~p~~~ 797 (902)
+.|++.
T Consensus 131 -l~p~d~ 136 (159)
T 2hr2_A 131 -MIEERK 136 (159)
T ss_dssp -HHHHCC
T ss_pred -cCCCcH
Confidence 556543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.1e-05 Score=86.73 Aligned_cols=183 Identities=8% Similarity=-0.031 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHH
Q 048778 667 GRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEH 745 (902)
Q Consensus 667 g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (902)
...++|++.++++++ +.| +..+|+.-...+...++..+ .+ .....+++
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~--------------------~~---------~~~~~~~~ 91 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKS--------------------PE---------ESAALVKA 91 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSC--------------------HH---------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccc--------------------hh---------hhhhhHHH
Confidence 344678999999987 455 45666665555555541000 00 00003899
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccC-ChHHHHHHHHHHH
Q 048778 746 AFRLRDRIESCGGSTTDFYNFLVVELCRAG--RIVEADRIMKDIMKSGVFPAKAITSIIGCYCKER-KYDDCLEFMNLIL 822 (902)
Q Consensus 746 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 822 (902)
+.+.++++++.+|.+..+|..-++.+.+.| +++++++.++++++..++-..+.+...+++.+.| .++++++++++++
T Consensus 92 eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I 171 (567)
T 1dce_A 92 ELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI 171 (567)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999 7799999999999955333333377788888889 8999999999998
Q ss_pred HcCCCC-CHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhH
Q 048778 823 ESGFVP-SFESHCTVIQGLQSE--------------GRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGK 883 (902)
Q Consensus 823 ~~~~~p-~~~~~~~l~~~l~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 883 (902)
+. .| +..+|...+.++.+. +.+++|++++++++...+. +...|..+...+.+.|++++
T Consensus 172 ~~--~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 172 TR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp TT--TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred HH--CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 75 45 457888877777663 6689999999999887754 56788777777777776544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.1e-05 Score=70.75 Aligned_cols=99 Identities=16% Similarity=0.076 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH----hH-HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHH
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK----AI-TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFE 831 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 831 (902)
+.+...+..++..+...|++++|+..|+++++. .|+. .. ..++.+|...|++++|+..++++.+. .| +..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 100 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVK 100 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHH
Confidence 556666677777777777777777777777663 3432 22 66666777777777777777777654 33 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 832 SHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 832 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
.+..++.++...|++++|+..++++++..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 66677777777777777777777776654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.20 E-value=9.8e-06 Score=74.20 Aligned_cols=134 Identities=8% Similarity=-0.057 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---chH--hH-HHHHHHHHccCChHHHHHHHHHHHHc----CCCC-C
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF---PAK--AI-TSIIGCYCKERKYDDCLEFMNLILES----GFVP-S 829 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~~--~~-~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~ 829 (902)
..++..++..+...|++++|+..++++++.... +.. .. ..++..|...|++++|..+++++.+. +..+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345667777777777777777777777653111 111 12 66777777788888888877776632 1011 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CC-cchhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 830 FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG----IE-EKAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 830 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
...+..++.++...|++++|...++++++... .+ ....+..++..+...|++++|++.+++..+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35566777777788888888888877764421 11 1234556667777788888888887776543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.5e-05 Score=72.96 Aligned_cols=126 Identities=12% Similarity=0.024 Sum_probs=96.1
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---Cch-Hh-H-HHH
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGG--ST----TDFYNFLVVELCRAGRIVEADRIMKDIMKSGV---FPA-KA-I-TSI 801 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~-~-~~l 801 (902)
+..++..|++++|.+.++++++..+ ++ ..++..++..+...|++++|+..++++.+... .+. .. . ..+
T Consensus 16 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 95 (164)
T 3ro3_A 16 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 95 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 3334444499999999999987752 22 24788999999999999999999999875321 111 12 2 788
Q ss_pred HHHHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 802 IGCYCKERKYDDCLEFMNLILES----GFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 802 ~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
+.++...|++++|..++++..+. +..+ ....+..++.++...|++++|...++++++.
T Consensus 96 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 96 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 89999999999999999998742 2111 1367788999999999999999999998654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.2e-05 Score=70.50 Aligned_cols=98 Identities=11% Similarity=0.035 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhh
Q 048778 654 ITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERS 733 (902)
Q Consensus 654 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (902)
..+..++..+...|++++|...+++..+. .+.+...+..+...+...|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~~------------------------------- 52 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKG------------------------------- 52 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHT-------------------------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHhc-------------------------------
Confidence 45666777777788888888888877764 2335666667777777777
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGST-------TDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
++++|...++++++..|.+ ..++..++..|...|++++|.+.|+++.+..
T Consensus 53 --------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 53 --------DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --------cHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8888888888888776554 7788999999999999999999999998854
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=71.51 Aligned_cols=56 Identities=13% Similarity=-0.027 Sum_probs=34.5
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGS-------TTD-----FYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
+..+.+.|++++|...|+++++.+|. +.. +|..++.++.+.|++++|+..++++++
T Consensus 18 G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 18 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444455777777777777777665 222 566666666666666666666666555
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-05 Score=74.24 Aligned_cols=99 Identities=12% Similarity=0.033 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CC--------CchHhH--HHHHHHHHccCChHHHHHHHHHHH
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKS--------GV--------FPAKAI--TSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~--------~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
...+...+..+.+.|++++|+..|+++++. .+ .|.... ..++.+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566677777777777777777777663 00 232223 677777888888888888888887
Q ss_pred HcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 823 ESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 823 ~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
+. .| +...|..++.+|...|++++|+..++++++..+
T Consensus 91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 64 44 357777788888888888888888888776653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.14 E-value=2e-06 Score=74.13 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=59.3
Q ss_pred ccHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHH
Q 048778 741 MDVEHAFRLRDRIESC---GGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCL 815 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~ 815 (902)
|++++|+..|+++++. +|.+..++..++..|...|++++|+..|+++++.. |+... ..++.+|...|++++|+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4777888888888877 36667778888888888888888888888887743 44333 77777778888888888
Q ss_pred HHHHHHHHc
Q 048778 816 EFMNLILES 824 (902)
Q Consensus 816 ~~~~~~~~~ 824 (902)
..++++++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888777754
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.8e-05 Score=72.67 Aligned_cols=54 Identities=17% Similarity=0.092 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
++++|...++++++.+|.++.+|..++.+|...|++++|+..|+++++ +.|+..
T Consensus 78 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 78 DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 888999999998888888888888899999999999999999988888 456654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1e-05 Score=85.58 Aligned_cols=120 Identities=13% Similarity=0.039 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--------------CCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 048778 764 YNFLVVELCRAGRIVEADRIMKDIMKS--------------GVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFV 827 (902)
Q Consensus 764 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 827 (902)
|..++..+.+.|++++|++.|+++++. ...|.... ..++.+|.+.|++++|+..++++++. .
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--D 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--C
Confidence 455677788888888888888887751 02344333 77888888888888888888888874 4
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHH
Q 048778 828 P-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSID 886 (902)
Q Consensus 828 p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 886 (902)
| +...|..++.+|...|++++|+..++++++..+. +...+..+...+.+.++++++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4577888888888888888888888888777543 44556666777777777777654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00013 Score=79.69 Aligned_cols=117 Identities=9% Similarity=-0.004 Sum_probs=76.9
Q ss_pred cHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CchHhH--HHHHHHHHccC
Q 048778 742 DVEHAFRLRDRIESCG------GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGV----FPAKAI--TSIIGCYCKER 809 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~--~~l~~~~~~~g 809 (902)
+.++|..++++.+... +.-..++..|+..|...|++++|..+++++...-. .+.... ..++..|...|
T Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (434)
T 4b4t_Q 110 SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR 189 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC
Confidence 6777777777665432 22345677788888888888888888887754311 222222 67777888888
Q ss_pred ChHHHHHHHHHHHHc--CC-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 810 KYDDCLEFMNLILES--GF-VP-S--FESHCTVIQGLQSEGRNKQAKNLVSDLFR 858 (902)
Q Consensus 810 ~~~~A~~~~~~~~~~--~~-~p-~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 858 (902)
++++|..+++++... .+ .| . ...+..++..+...|++++|...+.++.+
T Consensus 190 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 190 NLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 888888888877631 11 12 1 24556666677778888888888777654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.1e-05 Score=86.25 Aligned_cols=126 Identities=10% Similarity=-0.016 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCcCCccccccccCCC
Q 048778 654 ITYSILVRAHASTGRLDHAFKIVSFMVANGCQLN----------------SNVYSALLAGLVSSNKASGVLSISTSCHSD 717 (902)
Q Consensus 654 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 717 (902)
..|..+...+.+.|++++|+..|+++++. .|+ ...|..+..+|.+.+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--------------- 331 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR--------------- 331 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc---------------
Confidence 34555666666666666666666666652 221 345566666666666
Q ss_pred CCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh
Q 048778 718 AGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
++++|+..++++++.+|.+..+|..++.+|...|++++|+..|+++++ +.|+..
T Consensus 332 ------------------------~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~ 385 (457)
T 1kt0_A 332 ------------------------EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNK 385 (457)
T ss_dssp ------------------------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----
T ss_pred ------------------------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCH
Confidence 888888888888888888888888888888888888888888888877 445544
Q ss_pred H--HHHHHHHHccCChHHHHH-HHHHHH
Q 048778 798 I--TSIIGCYCKERKYDDCLE-FMNLIL 822 (902)
Q Consensus 798 ~--~~l~~~~~~~g~~~~A~~-~~~~~~ 822 (902)
. ..+..++...|++++|.+ .+++|.
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 667777777777776653 344443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00012 Score=79.83 Aligned_cols=154 Identities=7% Similarity=-0.056 Sum_probs=111.4
Q ss_pred hccHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCchHhH--HHHHHHHHc
Q 048778 740 EMDVEHAFRLRDRIESCGGS--T----TDFYNFLVVELCRAGRIVEADRIMKDIMKS----GVFPAKAI--TSIIGCYCK 807 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~--~~l~~~~~~ 807 (902)
.|++++|.+.+..+.+..+. + ..+.+.++..+...|++++|+.++++.... +..+.... ..++..|..
T Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (434)
T 4b4t_Q 68 MGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ 147 (434)
T ss_dssp HTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 33999999999988775411 1 234555666777789999999999888642 22233222 789999999
Q ss_pred cCChHHHHHHHHHHHH--cCCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCC-c--chhHHHHHHHHh
Q 048778 808 ERKYDDCLEFMNLILE--SGFV--PS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYN---GIE-E--KAAVLPYIEFLL 876 (902)
Q Consensus 808 ~g~~~~A~~~~~~~~~--~~~~--p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~---~~~-~--~~~~~~l~~~~~ 876 (902)
.|++++|..+++++.. .+.. +. ...+...+.+|...|++++|..++++++... ..| . ...+..++..+.
T Consensus 148 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (434)
T 4b4t_Q 148 KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC 227 (434)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999873 2222 21 3788899999999999999999999986442 122 1 234455556677
Q ss_pred cCCcHhHHHHHHHHHHh
Q 048778 877 TGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 877 ~~g~~~~a~~~l~~~~~ 893 (902)
..|++++|...+.+...
T Consensus 228 ~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 228 EDKDYKTAFSYFFESFE 244 (434)
T ss_dssp SSSCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 88999999888776654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=6.4e-06 Score=73.05 Aligned_cols=91 Identities=14% Similarity=0.075 Sum_probs=73.8
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCchHhH--HHHHHHHH
Q 048778 739 REMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRI----------VEADRIMKDIMKSGVFPAKAI--TSIIGCYC 806 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~ 806 (902)
+.+.+++|.+.+++.++.+|.+...|..++.++...+++ ++|+..|+++++ +.|+... ..++.+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHH
Confidence 445999999999999999999999999999999998875 589999999988 5565554 88888888
Q ss_pred ccC-----------ChHHHHHHHHHHHHcCCCCCHHHH
Q 048778 807 KER-----------KYDDCLEFMNLILESGFVPSFESH 833 (902)
Q Consensus 807 ~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~ 833 (902)
..| ++++|++.|+++++. .|+...|
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 764 788888888888774 5665443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.09 E-value=8.6e-06 Score=70.01 Aligned_cols=88 Identities=14% Similarity=0.076 Sum_probs=69.6
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhcc
Q 048778 665 STGRLDHAFKIVSFMVANGC-QL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMD 742 (902)
Q Consensus 665 ~~g~~~~A~~~~~~m~~~g~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (902)
..|++++|+..+++.++.+. .| +...+..+...+...| +
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~---------------------------------------~ 42 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG---------------------------------------E 42 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT---------------------------------------C
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC---------------------------------------C
Confidence 35788888999988886421 23 4567777777888888 9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
+++|.+.|+++++.+|.++.++..++.++...|++++|+..++++++..
T Consensus 43 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 43 YRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999998754
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.07 E-value=7.8e-05 Score=65.09 Aligned_cols=95 Identities=12% Similarity=-0.009 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGCQLNS---NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERS 733 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (902)
..+...+...|++++|...++++++.. +.+. ..+..+...+...|
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~------------------------------- 53 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATR------------------------------- 53 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTT-------------------------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhc-------------------------------
Confidence 445667788899999999998888742 1222 46666777777777
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKSG 791 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 791 (902)
++++|...|+++++..|.+ +.++..++.+|...|++++|+..|+++++..
T Consensus 54 --------~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 54 --------NFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp --------CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred --------cHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999988888 7889999999999999999999999998854
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.8e-05 Score=82.23 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 656 YSILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 656 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
+..+...+.+.|++++|++.|++.++
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~ 251 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLR 251 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45566666677777777777766654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.02 E-value=6e-06 Score=86.45 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh------------------H-HHHHHHHHccCChHHHHHHHHHH
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA------------------I-TSIIGCYCKERKYDDCLEFMNLI 821 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------------------~-~~l~~~~~~~g~~~~A~~~~~~~ 821 (902)
...+..++..+.+.|++++|+..|+++++ ..|+.. . ..++.+|.+.|++++|+..++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566677777777777777777777776 335443 4 77888889999999999999988
Q ss_pred HHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHH-HhcCCcHhHHHHHHHHHHhcCcc
Q 048778 822 LESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEF-LLTGDELGKSIDLLNLIDQVHYR 897 (902)
Q Consensus 822 ~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~l~~~~~~~~~ 897 (902)
++. .| +...|..++.+|...|++++|+..++++++..+. +...+..+... ....++.+++.+.++.|......
T Consensus 257 l~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 257 LTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp HHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 875 45 4578888888999999999999999987655432 23344444444 23456777888888888766543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.1e-05 Score=84.45 Aligned_cols=48 Identities=8% Similarity=-0.052 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|...++++++.+|.+..+|..++.+|...|++++|+..|+++++
T Consensus 245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555554454555555555555555555555555555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.1e-05 Score=88.72 Aligned_cols=118 Identities=13% Similarity=0.065 Sum_probs=75.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhh
Q 048778 660 VRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLR 739 (902)
Q Consensus 660 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (902)
...+.+.|++++|++.++++++. .+.+...|..+...+.+.|
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g------------------------------------- 54 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTE------------------------------------- 54 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT-------------------------------------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhc-------------------------------------
Confidence 33455667777777777777663 1224566666776776666
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHH--HHccCChHHHH
Q 048778 740 EMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGC--YCKERKYDDCL 815 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~--~~~~g~~~~A~ 815 (902)
++++|.+.++++++.+|.+..+|..++.+|...|++++|++.|+++++.. |+... ..+..+ +.+.|++++|+
T Consensus 55 --~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~ 130 (477)
T 1wao_1 55 --CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAI 130 (477)
T ss_dssp --CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-
T ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777643 33322 444444 66677777777
Q ss_pred HHHH
Q 048778 816 EFMN 819 (902)
Q Consensus 816 ~~~~ 819 (902)
+.++
T Consensus 131 ~~~~ 134 (477)
T 1wao_1 131 AGDE 134 (477)
T ss_dssp ----
T ss_pred cccc
Confidence 7776
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00029 Score=78.89 Aligned_cols=188 Identities=10% Similarity=-0.020 Sum_probs=144.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048778 563 KLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGN----------IALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRG 632 (902)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 632 (902)
..++|.+.+++++..+. -+...|+.--..+...|+ ++++++.++.+.+.. +-+..+|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 34677888888887532 246667776666777676 899999999999875 668889998888888889
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccc
Q 048778 633 --RFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTG-RLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLS 709 (902)
Q Consensus 633 --~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 709 (902)
++++++..++++.+.. +-+...|+.-..++.+.| .++++++.++++++. -+-|...|+.....+.+.+...++-.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-TCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH-CCCCccHHHHHHHHHHhhcccccccc
Confidence 7799999999999876 567888988888888888 899999999999874 23377888887777766541110000
Q ss_pred cccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 048778 710 ISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVE 779 (902)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 779 (902)
. .....+.+++|.+.+++++..+|.|..+|+.+...+.+.++.++
T Consensus 200 -----------~--------------~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 -----------Q--------------GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp -----------C--------------CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred -----------c--------------ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 0 00012378999999999999999999999999999999888555
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00026 Score=62.63 Aligned_cols=111 Identities=7% Similarity=-0.026 Sum_probs=93.2
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHc----cCChHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCK----ERKYDDCLEF 817 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~----~g~~~~A~~~ 817 (902)
+.++|.+.|++..+.+.+... |+..|...+..++|++.|+++.+.| .......|+..|.. .+++++|..+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 899999999999998755544 8888888889999999999999854 22222888888988 8899999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 048778 818 MNLILESGFVPSFESHCTVIQGLQS----EGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 818 ~~~~~~~~~~p~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~ 861 (902)
++++.+.| ++..+..++.+|.. .++.++|+.+++++.+.+.
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999864 45677888888988 8999999999999988764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.81 E-value=7.6e-05 Score=63.66 Aligned_cols=78 Identities=6% Similarity=-0.069 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHH
Q 048778 745 HAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 745 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
+|.+.|+++++.+|.+...+..++..|...|++++|+..|+++++.. |+... ..++.+|...|++++|...+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57788899999889999999999999999999999999999999844 54443 888889999999999999999887
Q ss_pred Hc
Q 048778 823 ES 824 (902)
Q Consensus 823 ~~ 824 (902)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 63
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00015 Score=78.95 Aligned_cols=126 Identities=3% Similarity=-0.019 Sum_probs=85.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC---CCch---HhH--HHHHHHHHccCChHHHHHHHHHHHH-----cC-CCCCH-HHHH
Q 048778 770 ELCRAGRIVEADRIMKDIMKSG---VFPA---KAI--TSIIGCYCKERKYDDCLEFMNLILE-----SG-FVPSF-ESHC 834 (902)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~---~~p~---~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~~-~~~~ 834 (902)
.+...|++++|+.+++++++.. +.|+ ... +.|+.+|..+|++++|..+++++++ .| -.|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567788888888888876431 2232 222 7888888888888888888888773 12 12333 7778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----CCC-Ccch-hHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 835 TVIQGLQSEGRNKQAKNLVSDLFRY-----NGI-EEKA-AVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 835 ~l~~~l~~~g~~~~A~~~~~~~~~~-----~~~-~~~~-~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
.++.+|..+|++++|+.+++++++. |.. |+.. ....+..++...|++++|..+++++.+.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887643 322 2222 23344455667888888888888887654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.74 E-value=8.4e-05 Score=62.75 Aligned_cols=77 Identities=8% Similarity=-0.041 Sum_probs=48.0
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH------hH--HHHHHHHHccCC
Q 048778 739 REMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK------AI--TSIIGCYCKERK 810 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~--~~l~~~~~~~g~ 810 (902)
..|++++|.+.|+++++..|.++..|..++.+|...|++++|++.++++++ ..|+. .. ..++.++...|+
T Consensus 16 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 16 KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSKLQYRLELAQGAVGS 93 (111)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 333777777777777777777777777777777777777777777777776 33443 11 444455555555
Q ss_pred hHHHHHH
Q 048778 811 YDDCLEF 817 (902)
Q Consensus 811 ~~~A~~~ 817 (902)
+++|...
T Consensus 94 ~~~a~~~ 100 (111)
T 2l6j_A 94 VQIPVVE 100 (111)
T ss_dssp CCCCSSS
T ss_pred HhhhHhH
Confidence 4444433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=8e-05 Score=66.05 Aligned_cols=102 Identities=5% Similarity=-0.042 Sum_probs=76.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccH
Q 048778 664 ASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDV 743 (902)
Q Consensus 664 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (902)
.+.+.+++|++.+++.++. -+.+...|..+..++...++.+.+.. ..+.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l-~P~~aea~~n~G~~l~~l~~~~~g~~-----------------------------al~~~ 62 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS-NPLDADNLTRWGGVLLELSQFHSISD-----------------------------AKQMI 62 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHSCHHH-----------------------------HHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhcccchhhh-----------------------------hHhHH
Confidence 3456678888888888764 13366777777777776652211100 01157
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCchHh
Q 048778 744 EHAFRLRDRIESCGGSTTDFYNFLVVELCRAG-----------RIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 744 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
++|+..|+++++.+|.+..+|+.++.+|...| ++++|++.|+++++ +.|+..
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~ 125 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCH
Confidence 89999999999999999999999999999875 89999999999999 667654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00022 Score=77.78 Aligned_cols=120 Identities=8% Similarity=-0.064 Sum_probs=95.1
Q ss_pred hccHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CchHhH--HHHHH
Q 048778 740 EMDVEHAFRLRDRIESC-----GGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKS-----GV-FPAKAI--TSIIG 803 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~~~--~~l~~ 803 (902)
+|++++|..+++++++. ++.+ ..+++.|+..|...|++++|+.+++++++- |. .|+... +.|+.
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 44999999999988765 2333 567899999999999999999999998642 22 244444 89999
Q ss_pred HHHccCChHHHHHHHHHHHH-----cCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 804 CYCKERKYDDCLEFMNLILE-----SGF-VPSF-ESHCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~~-----~~~-~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
.|..+|++++|..+++++++ .|. .|+. .....+..++...|++++|..+|+++.+.
T Consensus 402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999884 232 2333 66678888999999999999999998543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0013 Score=58.11 Aligned_cols=80 Identities=6% Similarity=-0.036 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHc----cCChHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCR----AGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCK----ERKYDD 813 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~----~g~~~~ 813 (902)
.+++|.+.|+++.+. .++.++..|+..|.. .+++++|++.|+++.+.| .......|+..|.. .+++++
T Consensus 40 ~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~ 115 (138)
T 1klx_A 40 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQ 115 (138)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHH
Confidence 555566666666554 445556666666665 556666666666665533 11112555556655 566666
Q ss_pred HHHHHHHHHHcC
Q 048778 814 CLEFMNLILESG 825 (902)
Q Consensus 814 A~~~~~~~~~~~ 825 (902)
|..+++++.+.|
T Consensus 116 A~~~~~~Aa~~g 127 (138)
T 1klx_A 116 AVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 666666666544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00025 Score=57.16 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 048778 761 TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVI 837 (902)
Q Consensus 761 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 837 (902)
...+..++..+...|++++|+..++++++.. |+... ..++.+|...|++++|...++++.+. .| +...+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 3444455555555555555555555555422 22222 44555555555555555555555443 22 234444444
Q ss_pred HHHHh
Q 048778 838 QGLQS 842 (902)
Q Consensus 838 ~~l~~ 842 (902)
.++.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.59 E-value=7.9e-05 Score=62.91 Aligned_cols=95 Identities=9% Similarity=0.024 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhh
Q 048778 652 NHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYE 731 (902)
Q Consensus 652 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (902)
+...+..+...+...|++++|++.+++.++. .+.+...+..+..++...|
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g----------------------------- 52 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLG----------------------------- 52 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT-----------------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhc-----------------------------
Confidence 4556777788888888888888888888874 2335677777777787777
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGST------TDFYNFLVVELCRAGRIVEADRIMKD 786 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 786 (902)
++++|.+.++++++.+|.+ ..++..++.++...|++++|++.+++
T Consensus 53 ----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 53 ----------EYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp ----------CHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred ----------CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 8888888888888888777 77788888888888877777665544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00023 Score=60.57 Aligned_cols=80 Identities=11% Similarity=0.000 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHH
Q 048778 670 DHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRL 749 (902)
Q Consensus 670 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 749 (902)
++|+..+++.++. .+.+...+..+...+...| ++++|...
T Consensus 2 ~~a~~~~~~al~~-~p~~~~~~~~lg~~~~~~g---------------------------------------~~~~A~~~ 41 (115)
T 2kat_A 2 QAITERLEAMLAQ-GTDNMLLRFTLGKTYAEHE---------------------------------------QFDAALPH 41 (115)
T ss_dssp CCHHHHHHHHHTT-TCCCHHHHHHHHHHHHHTT---------------------------------------CHHHHHHH
T ss_pred hHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcc---------------------------------------CHHHHHHH
Confidence 3567778888763 2336778888888888888 99999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 750 RDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 750 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
|+++++.+|.+...|..++.+|...|++++|+..|+++++
T Consensus 42 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 42 LRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00028 Score=58.25 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
|.++.++..++..|...|++++|+..|+++++.. |+... ..++.+|...|++++|+..+++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666777777777777777777777777777633 43333 6667777777777777777776654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0011 Score=53.14 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|...++++++..|.+...+..++..+...|++++|+..++++.+
T Consensus 24 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 444444444444444444444444444444444444444444444444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00033 Score=57.77 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=48.0
Q ss_pred hhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 739 REMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 739 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
..|++++|++.|+++++.+|.+..+|..++.+|...|++++|++.|+++++
T Consensus 19 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 19 KHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333999999999999999999999999999999999999999999999987
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0054 Score=59.82 Aligned_cols=105 Identities=16% Similarity=0.091 Sum_probs=79.6
Q ss_pred ccHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCchH-hH--HHHHHHHHc-cC
Q 048778 741 MDVEHAFRLRDRIESCGGS--TTDFYNFLVVELCRA-----GRIVEADRIMKDIMKSGVFPAK-AI--TSIIGCYCK-ER 809 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~-~~--~~l~~~~~~-~g 809 (902)
+...+|...++++++++|. +..+|..|+..|... |+.++|.++|+++++ +.|+. .. ...++.++. .|
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 3788999999999999988 778999999999995 899999999999998 55653 33 777777777 48
Q ss_pred ChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 810 KYDDCLEFMNLILESGFV--PSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 810 ~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
+.++|.+++++.+..... |+.... ..+.-++|..++++
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~la--------n~~~q~eA~~LL~~ 294 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLL--------VILSQKRARWLKAH 294 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHH--------HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHH--------HHHHHHHHHHHHHH
Confidence 889999999988876444 443322 23444566666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0011 Score=67.63 Aligned_cols=120 Identities=13% Similarity=-0.020 Sum_probs=87.8
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---C--CHH--HHH-HHHHHHHHcCCCchHhH--HHHHHHHHccCCh
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRA---G--RIV--EAD-RIMKDIMKSGVFPAKAI--TSIIGCYCKERKY 811 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g--~~~--~A~-~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~ 811 (902)
+..+|..+|+++++.+|....+|..++.+|... + ... +++ ..++........|.... ..++..+...|++
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~ 293 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKT 293 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCH
Confidence 779999999999999999999999888777521 1 111 111 12222222112233333 5566666678999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048778 812 DDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE 863 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 863 (902)
++|...+++++..+ |+...|..++.++.-.|++++|++.+++++...+.+
T Consensus 294 d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 294 DESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999999864 887888889999999999999999999998876544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.024 Score=55.34 Aligned_cols=126 Identities=7% Similarity=0.049 Sum_probs=90.6
Q ss_pred hcCCCCHHHHHHHHHHH---Hhc--C------CHHHHHHHHHHHHHcCCCch--HhH--HHHHHHHHcc-----CChHHH
Q 048778 755 SCGGSTTDFYNFLVVEL---CRA--G------RIVEADRIMKDIMKSGVFPA--KAI--TSIIGCYCKE-----RKYDDC 814 (902)
Q Consensus 755 ~~~~~~~~~~~~l~~~~---~~~--g------~~~~A~~~~~~~~~~~~~p~--~~~--~~l~~~~~~~-----g~~~~A 814 (902)
+.++.+...+...+.+. ... | ...+|..+++++++ +.|+ ... ..++..|... |+.++|
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA 223 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKA 223 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHH
Confidence 33466666555444433 222 3 35788999999999 5566 433 7788888884 999999
Q ss_pred HHHHHHHHHcCCCC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC--CcchhHHHHHHHHhcCCcHhHHHHHHH
Q 048778 815 LEFMNLILESGFVP--SFESHCTVIQGLQSE-GRNKQAKNLVSDLFRYNGI--EEKAAVLPYIEFLLTGDELGKSIDLLN 889 (902)
Q Consensus 815 ~~~~~~~~~~~~~p--~~~~~~~l~~~l~~~-g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~l~ 889 (902)
.++|+++++. .| +..++...++.|+.. |+.++|.+++++++..+.. |+... ...+...+|..+++
T Consensus 224 ~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~l--------an~~~q~eA~~LL~ 293 (301)
T 3u64_A 224 HTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKL--------LVILSQKRARWLKA 293 (301)
T ss_dssp HHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhH--------HHHHHHHHHHHHHH
Confidence 9999999985 56 478888899999885 9999999999999998877 55432 22344556767666
Q ss_pred HHH
Q 048778 890 LID 892 (902)
Q Consensus 890 ~~~ 892 (902)
++.
T Consensus 294 ~~~ 296 (301)
T 3u64_A 294 HVQ 296 (301)
T ss_dssp THH
T ss_pred HhH
Confidence 554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00056 Score=56.17 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=59.3
Q ss_pred hhhhhhhhccHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCCh
Q 048778 733 SSKNFLREMDVEHAFRLRDRIESCGGSTTD-FYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKY 811 (902)
Q Consensus 733 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~ 811 (902)
.+..+.+.|++++|.+.++++++.+|.+.. .|..++.+|...|++++|++.|+++++. .|+.... ... +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~-~~~-----~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPAL-QAR-----KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHH-HHH-----HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHH-HHH-----HHH
Confidence 344556667999999999999988888888 8999999999999999999999998884 4544320 000 445
Q ss_pred HHHHHHHHHHH
Q 048778 812 DDCLEFMNLIL 822 (902)
Q Consensus 812 ~~A~~~~~~~~ 822 (902)
.+|...+++..
T Consensus 78 ~~a~~~~~~~~ 88 (99)
T 2kc7_A 78 MDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHHHh
Confidence 55555555543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0027 Score=67.89 Aligned_cols=87 Identities=6% Similarity=-0.021 Sum_probs=62.5
Q ss_pred hcCCHHHHHHHHHHHHHc---CCCchH---hH--HHHHHHHHccCChHHHHHHHHHHHH-----cC-CCCCH-HHHHHHH
Q 048778 773 RAGRIVEADRIMKDIMKS---GVFPAK---AI--TSIIGCYCKERKYDDCLEFMNLILE-----SG-FVPSF-ESHCTVI 837 (902)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~---~~~p~~---~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~~-~~~~~l~ 837 (902)
..|++++|+.+++++++. -+.|+. .. +.|+.+|..+|++++|..+++++++ .| -.|+. .+++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356788888888877642 122332 22 7788888888888888888888773 12 13444 7788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 048778 838 QGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 838 ~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
.+|..+|++++|+.+++++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999987643
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0039 Score=54.52 Aligned_cols=86 Identities=12% Similarity=0.159 Sum_probs=70.4
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCc-h-HhH-HHHHHHHHccCChHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG---RIVEADRIMKDIMKSGVFP-A-KAI-TSIIGCYCKERKYDDCL 815 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~-~~~-~~l~~~~~~~g~~~~A~ 815 (902)
.+..+.+.|.+..+.++++..+...+++++.+.+ +.++++.+++...+.. .| + .-. ..++-+|.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 7778888888888888889999999999999988 6679999999998854 24 2 222 88888899999999999
Q ss_pred HHHHHHHHcCCCCCH
Q 048778 816 EFMNLILESGFVPSF 830 (902)
Q Consensus 816 ~~~~~~~~~~~~p~~ 830 (902)
++++.+++. +|+.
T Consensus 92 ~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 92 KYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHHHHHHH--CTTC
T ss_pred HHHHHHHhc--CCCC
Confidence 999999884 6753
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0062 Score=48.91 Aligned_cols=48 Identities=10% Similarity=-0.018 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKS 790 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 790 (902)
.++|..+++++++.+|.++.++..++..+.+.|++++|+..|+++++.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 577777777777777777777777777777777777777777777763
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0092 Score=60.96 Aligned_cols=138 Identities=6% Similarity=-0.100 Sum_probs=93.2
Q ss_pred hcCCCCHHHHHHHHHHH--HhcC---CHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHc---cC-Ch-HH--HH-HHHH
Q 048778 755 SCGGSTTDFYNFLVVEL--CRAG---RIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCK---ER-KY-DD--CL-EFMN 819 (902)
Q Consensus 755 ~~~~~~~~~~~~l~~~~--~~~g---~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~---~g-~~-~~--A~-~~~~ 819 (902)
...|.+..+|.....+. ...+ ...+|+.+|+++++ ..|+... ..+..+|.. .+ .. .. ++ ..++
T Consensus 188 ~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 188 KILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 33477888888776654 3333 46899999999999 6687655 444444431 11 11 11 11 1222
Q ss_pred HHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcCc
Q 048778 820 LILESGF-VPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVHY 896 (902)
Q Consensus 820 ~~~~~~~-~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~~ 896 (902)
....... ..+..+|..++..+...|++++|+..+++++... |+...|..++..+.-.|++++|++.+++......
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 2111112 3356788888777778899999999999998886 5666776777778889999999999998876643
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0042 Score=66.44 Aligned_cols=83 Identities=8% Similarity=-0.086 Sum_probs=68.4
Q ss_pred ccHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CchHhH--HHHHHH
Q 048778 741 MDVEHAFRLRDRIESC-----GGST---TDFYNFLVVELCRAGRIVEADRIMKDIMKS-----GV-FPAKAI--TSIIGC 804 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~~~--~~l~~~ 804 (902)
|++++|..++++.++. +|.+ ..+++.|+..|...|++++|+.+++++++- |. .|+... +.|+..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 3899999999998774 3444 456889999999999999999999998742 32 344444 899999
Q ss_pred HHccCChHHHHHHHHHHHH
Q 048778 805 YCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~ 823 (902)
|..+|++++|..+++++++
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999999875
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.01 Score=63.59 Aligned_cols=92 Identities=13% Similarity=0.001 Sum_probs=72.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC---CCchHh---H--HHHHHHHHccCChHHHHHHHHHHHH-----cC-CCCCH-HH
Q 048778 768 VVELCRAGRIVEADRIMKDIMKSG---VFPAKA---I--TSIIGCYCKERKYDDCLEFMNLILE-----SG-FVPSF-ES 832 (902)
Q Consensus 768 ~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~---~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~~-~~ 832 (902)
+..+...|++++|+.+++++++.. +.|+.. . +.++.+|...|++++|+.+++++++ .| ..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667899999999999998532 233332 2 8889999999999999999998884 12 23444 78
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048778 833 HCTVIQGLQSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 833 ~~~l~~~l~~~g~~~~A~~~~~~~~~~ 859 (902)
++.++..|..+|++++|+.+++++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 889999999999999999999998643
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0022 Score=52.42 Aligned_cols=82 Identities=7% Similarity=0.100 Sum_probs=49.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhh
Q 048778 659 LVRAHASTGRLDHAFKIVSFMVANGCQLNSN-VYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNF 737 (902)
Q Consensus 659 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (902)
....+.+.|++++|+..++++++. .+.+.. .+..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~lg~~~~~~~----------------------------------- 49 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT-EPVGKDEAYYLMGNAYRKLG----------------------------------- 49 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CSSTHHHHHHHHHHHHHHHT-----------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHcC-----------------------------------
Confidence 345566667777777777777653 122445 5666666666666
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 738 LREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIM 788 (902)
Q Consensus 738 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (902)
++++|.+.|+++++.+|.+..++.. +.+.+|...|++..
T Consensus 50 ----~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 50 ----DWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDM 88 (99)
T ss_dssp ----CHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTT
T ss_pred ----CHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHh
Confidence 7777777777777777666665532 33455555554443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0073 Score=48.48 Aligned_cols=65 Identities=12% Similarity=0.153 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHc
Q 048778 758 GSTTDFYNFLVVELCRAGR---IVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 824 (902)
|+++..+..++.++...++ .++|..+++++++ ..|+... ..++..+.+.|++++|+.+|+++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6777777777777765554 6788888888877 4566555 66677777777777777777777764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.075 Score=47.72 Aligned_cols=128 Identities=9% Similarity=0.084 Sum_probs=94.2
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLE 816 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~ 816 (902)
....|+++.|.++.+++ .+...|..|+......|+++-|++.|++..+ ...+.-.|.-.|+.++-.+
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHH
Confidence 34567999999998776 5788999999999999999999999998743 1456667888899888887
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHH
Q 048778 817 FMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLID 892 (902)
Q Consensus 817 ~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 892 (902)
+.+.....| -++....++...|+++++++++.+ .+..|... ......|.-+.|.++++++.
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 777776654 234444556688999999999987 34333221 11223677788888887763
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.01 Score=63.55 Aligned_cols=84 Identities=11% Similarity=0.114 Sum_probs=68.5
Q ss_pred hccHHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCchHhH--HHHHH
Q 048778 740 EMDVEHAFRLRDRIESCG-----GST---TDFYNFLVVELCRAGRIVEADRIMKDIMKS-----G-VFPAKAI--TSIIG 803 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~~~--~~l~~ 803 (902)
.|++++|..+++++++.. +.+ ..+++.|+..|...|++++|+.+++++++- | -.|+... +.|+.
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 339999999999998752 444 457889999999999999999999988742 2 2344444 89999
Q ss_pred HHHccCChHHHHHHHHHHHH
Q 048778 804 CYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~~ 823 (902)
.|...|++++|..+++++++
T Consensus 380 ~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999998874
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.17 Score=59.83 Aligned_cols=63 Identities=16% Similarity=0.000 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 622 TVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSS 701 (902)
Q Consensus 622 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 701 (902)
..++..+.+.|..++|.++.+. .. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4455555566666666554321 10 1122234556666666654322 3445666666666666
Q ss_pred C
Q 048778 702 N 702 (902)
Q Consensus 702 ~ 702 (902)
+
T Consensus 695 ~ 695 (814)
T 3mkq_A 695 F 695 (814)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.22 Score=41.66 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=90.1
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDC 814 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A 814 (902)
..-.|.+++..++..+.... .+..-++..+.-....-+-+-..++++.+=+- ..-+.-. ..++.+|...|...
T Consensus 17 ~ildG~v~qGveii~k~~~s--sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-FDis~C~NlKrVi~C~~~~n~~s-- 91 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS--STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLDKCQNLKSVVECGVINNTLN-- 91 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGGGCSCTHHHHHHHHHTTCCC--
T ss_pred HHHhhhHHHHHHHHHHHcCC--CCccccceeeeecchhhchhHHHHHHHHHhhh-cCcHhhhcHHHHHHHHHHhcchH--
Confidence 33456999999999998874 55555666666666666666656666555321 1111111 55666666554433
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 815 LEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
+..+...+.+..+|+.++-.+++..++. ...|++.....+..+|.+.|+..+|.+++++.=++
T Consensus 92 ----------------e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 92 ----------------EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp ----------------HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----------------HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3444455567778888888888887544 33455666677888888888888888888888888
Q ss_pred Ccc
Q 048778 895 HYR 897 (902)
Q Consensus 895 ~~~ 897 (902)
|.+
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 865
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.16 Score=42.48 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF 793 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 793 (902)
+-+.-.+++..++...++++.....++.+|.+.|+..+|.+++.++-++|++
T Consensus 106 KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 106 KRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred cHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 8888888888877766888999999999999999999999999999888753
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.016 Score=50.66 Aligned_cols=85 Identities=11% Similarity=0.149 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccC---ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 048778 776 RIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKER---KYDDCLEFMNLILESGFVP--SFESHCTVIQGLQSEGRNKQA 849 (902)
Q Consensus 776 ~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~l~~~g~~~~A 849 (902)
....+.+.|.+..+.+. ++..+ ..+++++++.+ ++++++.+++...+.. .| ..+.+..++-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 46677888888877665 44444 99999999988 7779999999999763 36 357888899999999999999
Q ss_pred HHHHHHHHhCCCC
Q 048778 850 KNLVSDLFRYNGI 862 (902)
Q Consensus 850 ~~~~~~~~~~~~~ 862 (902)
.++++++++..+.
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 9999999887643
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.074 Score=43.67 Aligned_cols=79 Identities=10% Similarity=-0.030 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCc
Q 048778 651 PNHITYSILVRAHASTGRLDHAFKIVSFMVANG------CQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLE 724 (902)
Q Consensus 651 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (902)
.+..-+..++..+.+.|+++.|..+++.+.+.. -.+...++..|..++.+.|
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g---------------------- 60 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG---------------------- 60 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT----------------------
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc----------------------
Confidence 345556678888999999999999999887631 1234567777777888877
Q ss_pred CCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 048778 725 HDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLV 768 (902)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 768 (902)
++++|...++++++..|.+..+...+.
T Consensus 61 -----------------~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 61 -----------------DLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp -----------------CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -----------------CHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 999999999999999999988766664
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.04 Score=45.33 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=38.9
Q ss_pred hhhhhhhhhhccHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 731 ERSSKNFLREMDVEHAFRLRDRIESCG-------GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 731 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
..++..+.+.++++.|...|+.+++.. +.....+..|+.+|.+.|++++|+..++++++ +.|+.
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 344444455557777777777766542 23455666667777777777777777777666 34544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.21 Score=42.86 Aligned_cols=107 Identities=13% Similarity=0.082 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCchHhH--H--HHHHH----HHccCChHHHHHHHHHHHH
Q 048778 758 GSTTDFYNFLVVELCRAGRI------VEADRIMKDIMKSGVFPAKAI--T--SIIGC----YCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~p~~~~--~--~l~~~----~~~~g~~~~A~~~~~~~~~ 823 (902)
|.|+.+|...+....+.|+. ++.+++|+++... +.|+... . ..++. +...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 88999999999999988998 8999999999874 4554321 2 22221 3456899999999999986
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcch
Q 048778 824 SGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKA 866 (902)
Q Consensus 824 ~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ 866 (902)
.+ +-=...|...++.=.++|+..+|.+++.+++.++..|...
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 42 1115666666666678999999999999999988776543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.61 Score=54.98 Aligned_cols=75 Identities=13% Similarity=0.023 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 587 TILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAST 666 (902)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 666 (902)
..++..+.+.|..++|+++.++. .. -.......|++++|.++.+. ..+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~---------~~---~f~~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ---------DQ---KFELALKVGQLTLARDLLTD------ESAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH---------HH---HHHHHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCc---------ch---heehhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHc
Confidence 44555556666666666544211 10 12223456777777766432 24567777777777777
Q ss_pred CCHHHHHHHHHHH
Q 048778 667 GRLDHAFKIVSFM 679 (902)
Q Consensus 667 g~~~~A~~~~~~m 679 (902)
|+++.|.+.|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 8877777777766
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.08 Score=44.41 Aligned_cols=81 Identities=10% Similarity=0.117 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCch--HhH-HHHHHHHHccCChHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVE---ADRIMKDIMKSGVFPA--KAI-TSIIGCYCKERKYDDCL 815 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p~--~~~-~~l~~~~~~~g~~~~A~ 815 (902)
.+..+.+-|.+....++++..+-..+++++.+..+..+ ++.+++.+.+.+ .|. .-. ..|+-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 44445555555555455555555556666655554433 555555555432 121 111 45555555555555555
Q ss_pred HHHHHHHH
Q 048778 816 EFMNLILE 823 (902)
Q Consensus 816 ~~~~~~~~ 823 (902)
++++.+++
T Consensus 95 ~~~~~lL~ 102 (126)
T 1nzn_A 95 KYVRGLLQ 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.83 E-value=7.8 Score=44.90 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 445 TYNILVDGFCREGQLDIALKIFNSMSI 471 (902)
Q Consensus 445 ~~~~ll~~~~~~g~~~~A~~~~~~m~~ 471 (902)
-|..++..+.+.++.+.+.++|.++.+
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677888889999999999999874
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.29 Score=42.06 Aligned_cols=115 Identities=7% Similarity=-0.005 Sum_probs=77.5
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCcCCccccccccCCCCCCCC
Q 048778 650 SPNHITYSILVRAHASTGRL------DHAFKIVSFMVANGCQLNS-NVYSALLAGLVSSNKASGVLSISTSCHSDAGSSR 722 (902)
Q Consensus 650 ~p~~~~~~~l~~~~~~~g~~------~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (902)
+.|..+|-..+...-+.|+. ++.+++|++.... ++|+. ..|...+....+--
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-------------------- 68 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-------------------- 68 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH--------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH--------------------
Confidence 34566777777777766777 7777777777764 55532 12222222211111
Q ss_pred CcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH
Q 048778 723 LEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
.+...++.++|.++|+.+++....=...|...+..-.++|+...|..++.+++..+.+|....
T Consensus 69 -------------~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 69 -------------ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp -------------HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred -------------HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 001123899999999999877644478888888888899999999999999999887776654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.15 Score=42.73 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=67.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc
Q 048778 770 ELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDD---CLEFMNLILESGFVP--SFESHCTVIQGLQSE 843 (902)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~l~~~ 843 (902)
..........+.+-|.+....|. +...+ ..++|++.+..+... ++.+++.+.+.+ .| .-+....++-++.+.
T Consensus 10 ~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 10 ELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHh
Confidence 33344456677777777766554 44455 899999999887666 899999987753 35 337777888899999
Q ss_pred CCHHHHHHHHHHHHhCCCC
Q 048778 844 GRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 844 g~~~~A~~~~~~~~~~~~~ 862 (902)
|++++|..+++.+++..+.
T Consensus 88 g~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHHhCCC
Confidence 9999999999999877643
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=4.6 Score=44.92 Aligned_cols=262 Identities=11% Similarity=0.082 Sum_probs=121.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048778 587 TILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHAST 666 (902)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 666 (902)
+..+..+.+.+++...+..+.. .+.+...-.....+....|+..+|....+.+-..| .........++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 3345556667777766664432 13345444556667777888777777777776555 34455566777777766
Q ss_pred CCHHH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhh-hccH
Q 048778 667 GRLDH--AFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLR-EMDV 743 (902)
Q Consensus 667 g~~~~--A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 743 (902)
|.... ...-+..+...| +......++..+ + ..+....+.... ..+.
T Consensus 150 g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l---~-------------------------~~~~~~a~~~~al~~~p 198 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM---P-------------------------ADYQTIASAIISLANNP 198 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC---C-------------------------GGGHHHHHHHHHHHHCG
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC---C-------------------------HHHHHHHHHHHHHHhCh
Confidence 65543 333333333322 222222222111 0 000000000000 0000
Q ss_pred HHHHHHHHHHHhcCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHhH---HHHHHHHHccCChHHHHHH
Q 048778 744 EHAFRLRDRIESCGGSTTDF--YNFLVVELCRAGRIVEADRIMKDIMKSG-VFPAKAI---TSIIGCYCKERKYDDCLEF 817 (902)
Q Consensus 744 ~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~---~~l~~~~~~~g~~~~A~~~ 817 (902)
..+.. .....+++... ...++-......+.+.|...+....+.. +.+.... ..++..+...+...++...
T Consensus 199 ~~~~~----~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~ 274 (618)
T 1qsa_A 199 NTVLT----FARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKW 274 (618)
T ss_dssp GGHHH----HHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHH
T ss_pred HhHHH----HHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 00000 00000111111 1111111122236677777777775433 2222221 3333344444534566666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CcchhHHHHHHHHhcCCcHhHHHHHHHHHHh
Q 048778 818 MNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI-EEKAAVLPYIEFLLTGDELGKSIDLLNLIDQ 893 (902)
Q Consensus 818 ~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~ 893 (902)
+...... .++.....+.+....+.|+++.|...++++...... +....| ++.++.+.|+.++|..+++.+.+
T Consensus 275 ~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW--~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 275 RDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYW--QADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHH--HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHH--HHHHHHHcCCHHHHHHHHHHHhc
Confidence 6654432 233333444444445668888888888775332111 111223 45566677888888887777654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.07 E-value=2.6 Score=37.73 Aligned_cols=101 Identities=11% Similarity=0.074 Sum_probs=57.7
Q ss_pred HhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHH
Q 048778 242 HCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDK 321 (902)
Q Consensus 242 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 321 (902)
...+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|....+ +..+.-.|...|+.+.
T Consensus 15 AL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 34567777777776654 2456677777777777777777777766543 3344444445566555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 048778 322 ALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKM 364 (902)
Q Consensus 322 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 364 (902)
-.++-+....+| -++.....+.-.|+++++.++|.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 554444443332 2334444455556666666666443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.00 E-value=1.1e-05 Score=83.11 Aligned_cols=265 Identities=15% Similarity=0.107 Sum_probs=170.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 048778 161 NYPCYSCLLMSLAKLDLGFVAYAVFVKLIADGFVLSAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVL 240 (902)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 240 (902)
...+|..|..+..+.+++.+|++.|-+. -|+..|..++.+..+.|.+++-...+....+. ..+..+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 4468999999999999999999887643 34556889999999999999999988777665 445566678999
Q ss_pred HHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChH
Q 048778 241 GHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLIHGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTD 320 (902)
Q Consensus 241 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 320 (902)
+|+|.+++.+-.++ .. .||+.-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++.
T Consensus 125 ayAk~~rL~elEef----l~----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 125 ALAKTNRLAELEEF----IN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHTSCSSSTTTST----TS----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGG
T ss_pred HHHhhCcHHHHHHH----Hc----CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHH
Confidence 99999987664333 22 48888888899999999999988877754432 333444455666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048778 321 KALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFELLALME 400 (902)
Q Consensus 321 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 400 (902)
.|.+.-++ ..+..||..+-.+|...+.+.-|.-.--.+.-. +| -...++..|-..|.+++-+.+++.-.
T Consensus 188 ~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 66543322 125667777777788777777665443333321 11 12234555667788888777777765
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC------CChhhHHHHHHHHHhcCCHHHHH
Q 048778 401 KRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDG-GLF------PDEITYNILVDGFCREGQLDIAL 463 (902)
Q Consensus 401 ~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~------~~~~~~~~ll~~~~~~g~~~~A~ 463 (902)
.. -+.....|+-|.-.|++- ++++-++-++..-.+ +++ -....|.-++-.|++-.+++.|.
T Consensus 257 gl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 257 GL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 32 134556666666666654 334433333322111 110 12334555666666666666553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.19 Score=44.27 Aligned_cols=112 Identities=6% Similarity=0.008 Sum_probs=68.6
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcC--CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHhH--H
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCG--GST-------TDFYNFLVVELCRAGRIVEADRIMKDIMKSG-VFPAKAI--T 799 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~--~ 799 (902)
..++.++..+.++.|+-+.+.++... +++ ..++..++.++...+++..|...|+++++.. .-+.... .
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 34455666669999998888876664 333 2367888999999999999999999986422 1111111 0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 800 SIIGCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 800 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
.+. ....... .....++.+.-..++.||.+.|++++|+.+++.+
T Consensus 105 ~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 105 STG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 010 0000000 0112335566677888999999999999888774
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.71 E-value=0.00025 Score=73.31 Aligned_cols=264 Identities=10% Similarity=0.084 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRA 662 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 662 (902)
...|..|..+....+.+.+|++-|-+. .|...|..+|.+..+.|.+++-++++....+.. -+...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 345666666666666666665544222 244456677777777888888777776665442 222333567778
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhcc
Q 048778 663 HASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMD 742 (902)
Q Consensus 663 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (902)
|.+.++..+-.+++ -.||..-...+.+-|...|.++.+.-+++..-. |.+++.++.+.|+
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-------------~akLAstLV~L~~ 185 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-------------FGRLASTLVHLGE 185 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-------------CTTTSSSSSSCSG
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-------------HHHHHHHHHHHHH
Confidence 88888776654443 245655566677778888877777766655432 4455566666777
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCChHHHHHHHHHHH
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERKYDDCLEFMNLIL 822 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 822 (902)
+..|.+.-++ ..++.+|..+..++...+.+.-|...--.++ +.||.. ..++.-|...|.++|-+.+++.-+
T Consensus 186 yq~AVdaArK-----Ans~ktWKeV~~ACvd~~EfrLAqicGLniI---vhadeL-~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 186 YQAAVDGARK-----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADEL-EELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp GGSSTTTTTT-----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSSCC-SGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHHHh-----cCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHHHH-HHHHHHHHhCCCHHHHHHHHHHHh
Confidence 7777654433 3577889999889999998888877665555 233322 446777888999999999988876
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-------chhHHHHHHHHhcCCcHhHHH
Q 048778 823 ESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEE-------KAAVLPYIEFLLTGDELGKSI 885 (902)
Q Consensus 823 ~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~ 885 (902)
... ......+..|+-.|.+- +.++-.+.++...+.-..|- .-.|..+...|.+-.+|+.|.
T Consensus 257 glE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 257 GLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 321 34456677777777654 44555444443211111111 223555565566666666554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.82 E-value=1.5 Score=37.34 Aligned_cols=70 Identities=13% Similarity=0.055 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 048778 758 GSTTDFYNFLVVELCRAGR---IVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDCLEFMNLILESGFVPS 829 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 829 (902)
.++..+-..+++++.+..+ ..+++.+++.+.+.+..-..-. ..|+-++.+.|++++|.++.+.+++. +|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 5666777777777777764 3467777777776443222333 66777777777777777777777763 564
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.21 E-value=1.5 Score=36.89 Aligned_cols=48 Identities=13% Similarity=0.222 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGG-STTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
+..+++.+++++.+.+| .....+..|+-++.+.|++++|.+..+.+++
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33444444444444432 2233444444445555555555555544444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.18 E-value=1.4 Score=37.05 Aligned_cols=68 Identities=15% Similarity=0.026 Sum_probs=53.4
Q ss_pred CchHhH-HHHHHHHHccCC---hHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 793 FPAKAI-TSIIGCYCKERK---YDDCLEFMNLILESGFVP--SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 793 ~p~~~~-~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
.|...+ ..++|++.+..+ ..+++.+++.+.+.+ | ..+.+..++-++.+.|++++|.++.+.+++..+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 344455 888999988774 557889999988754 5 3477888889999999999999999998776543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.02 E-value=28 Score=40.49 Aligned_cols=260 Identities=10% Similarity=-0.005 Sum_probs=122.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--C-----CCHHHHHHHHH
Q 048778 521 DGHCKNGKTGEALMIFERMVQNTDLKTP--HVLNSFLDVLCKENKLKEEYAMFGKILKFGL--V-----PSVVTYTILVD 591 (902)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~-----p~~~~~~~li~ 591 (902)
-+....|+.++++.+++..+..+...+. ..-..+.-+....|..+++..++...+...- . +....-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3556677777777777665542111222 2223334445555655667776666554211 0 11112222323
Q ss_pred HHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhc
Q 048778 592 GLFRAGN-IALAMSMIEVMKLAGCPPNVHTYTVII--NGLCQRGRFKEAEMLLFKMFDLGVSPNHITYS--ILVRAHAST 666 (902)
Q Consensus 592 ~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~ 666 (902)
+++-.|. -+++.+.+..+.... .+.......+. ..++-.|+-+-...++..+.+. .+..... .+.-++...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhC
Confidence 3333332 245556666555432 11111122222 2334556666666666665553 1223333 333334466
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHH
Q 048778 667 GRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHA 746 (902)
Q Consensus 667 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 746 (902)
|+.+.+..+++.+... ..|....-..+..++.-.| .|+....
T Consensus 538 g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaG-------------------------------------TGn~~aI 579 (963)
T 4ady_A 538 GRQELADDLITKMLAS-DESLLRYGGAFTIALAYAG-------------------------------------TGNNSAV 579 (963)
T ss_dssp TCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTT-------------------------------------SCCHHHH
T ss_pred CChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcC-------------------------------------CCCHHHH
Confidence 7877777777777652 2222222222333333333 1265555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCC-hHHHHHHHHHHHH
Q 048778 747 FRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERK-YDDCLEFMNLILE 823 (902)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~-~~~A~~~~~~~~~ 823 (902)
.++++.+.+....+..-...++-++...|+.+.+.++++.+.+.+ .|..-. ..++-+....|. ..+|+..+..+..
T Consensus 580 q~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 580 KRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 557777765433333333344444555566666666666555432 233222 333333333333 2567777777764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.96 E-value=0.95 Score=51.34 Aligned_cols=52 Identities=15% Similarity=0.117 Sum_probs=29.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHH
Q 048778 768 VVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLI 821 (902)
Q Consensus 768 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 821 (902)
+..+...|+++-|+++.+++.. ..|+++. ..|+.+|.+.|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3344455566666666666655 4455444 55666666666666666555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.65 E-value=1.1 Score=50.76 Aligned_cols=46 Identities=11% Similarity=0.016 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDI 787 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 787 (902)
+++-|.++.+++...-|.+-.+|..|+.+|...|+++.|+-.+..+
T Consensus 352 ~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 352 DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999888876
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.56 E-value=3.7 Score=35.02 Aligned_cols=70 Identities=14% Similarity=0.001 Sum_probs=54.6
Q ss_pred CchHhH-HHHHHHHHccCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 793 FPAKAI-TSIIGCYCKERK---YDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 793 ~p~~~~-~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
.|...+ ..++|++.+..+ ..+++.+++.+.+.+..-.-+....++-++.+.|++++|.++.+.+++..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 455555 889999998775 5578899999887532223477788889999999999999999999887643
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=90.01 E-value=5.5 Score=41.29 Aligned_cols=54 Identities=6% Similarity=-0.058 Sum_probs=24.1
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCG--GST----TDFYNFLVVELCRAGRIVEADRIMKDI 787 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 787 (902)
+..+...|++.+|.+++.++.+.- .++ ...+..-+..|...+++.++...+.++
T Consensus 106 ~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 106 IALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344444555555555554444321 111 122333344455555555555555444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.92 E-value=3.3 Score=36.43 Aligned_cols=118 Identities=10% Similarity=0.042 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCch-----HhH---HHHHHHHHccCChHHHHHHHHHHHHc-CCCCCH-HH
Q 048778 764 YNFLVVELCRAGRIVEADRIMKDIMKSG-VFPA-----KAI---TSIIGCYCKERKYDDCLEFMNLILES-GFVPSF-ES 832 (902)
Q Consensus 764 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-----~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~ 832 (902)
+..-+..+...|.++.|+-+...+.... ..|+ ... ..+++++...|++.+|...|+++++. ..-+.. ..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444556777888888888877754321 1122 222 66778888888888888888887631 111211 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 833 HCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 833 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
+..+ .-...... ......+...-+.+..++.+.|++++|+.+++.+..+
T Consensus 103 ~~~~----~~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 103 RPST----GNSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccc----cccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1111 00000000 0112233444556788899999999999999976433
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=89.41 E-value=21 Score=37.02 Aligned_cols=236 Identities=8% Similarity=-0.020 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH-
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLA-GCPPN---VHTYTVIINGLCQR-GRFKEAEMLLFKMFDLGVSPNHITY- 656 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~- 656 (902)
......|...|.+.|+.++..+++.....- +.-|- ......++..+... +..+.-.++..+..+.. ..+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 455677889999999999999999877541 11122 23456777777664 44555566666665422 1122233
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhh
Q 048778 657 -----SILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYE 731 (902)
Q Consensus 657 -----~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (902)
..++..|...|++.+|.+++.++.+.=-..|..+ .++.. |-
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~--~llev--------------------------------~l 143 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKN--LLVEV--------------------------------QL 143 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTH--HHHHH--------------------------------HH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--hHHHH--------------------------------HH
Confidence 2688999999999999999999987533333322 22222 22
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcC---CCCHHHH----HHHHHHHH-hcCCHHHHHHHHHHHHHcC--C-CchH--hH
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCG---GSTTDFY----NFLVVELC-RAGRIVEADRIMKDIMKSG--V-FPAK--AI 798 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~----~~l~~~~~-~~g~~~~A~~~~~~~~~~~--~-~p~~--~~ 798 (902)
.-++.+...+++..+...+.++.... ++++... ..-|..+. ..++|.+|...|-+..+.- . .|.. ..
T Consensus 144 le~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~l 223 (394)
T 3txn_A 144 LESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSL 223 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 33455666779999999998886553 2444322 22234556 7889999999887775321 1 1211 11
Q ss_pred -HHHHHHHHccCChHHHHHHHH-HH-HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 799 -TSIIGCYCKERKYDDCLEFMN-LI-LESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDL 856 (902)
Q Consensus 799 -~~l~~~~~~~g~~~~A~~~~~-~~-~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 856 (902)
..++-+.. .++..+-..++. .. ... ..|+...+..++.++ ..|++.+...+++..
T Consensus 224 kYlvL~aLl-~~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 224 KYMLLCKIM-LGQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHHH-TTCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred HHHHHHHHH-cCCHHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 22232232 333333333332 22 222 356666666676666 778998888887763
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.18 E-value=17 Score=38.60 Aligned_cols=195 Identities=10% Similarity=0.120 Sum_probs=93.6
Q ss_pred CCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHH
Q 048778 597 GNIALAMSMIEVMKL-----AGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDL-GVSPNHITYSILVRAHASTGRLD 670 (902)
Q Consensus 597 g~~~~A~~~~~~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~ 670 (902)
|+++.|++.+-.+.+ .+..-.......++..|...|+++...+.+.-+... |. -......+++.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q--lk~ai~~~V~~-------- 99 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ--LKLSIQYMIQK-------- 99 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT--SHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh--hHHHHHHHHHH--------
Confidence 677888777765553 223334556777778888888888777766655432 21 12222222221
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcC---CcchhhhhhhhhhhhccHHHHH
Q 048778 671 HAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEH---DDDDYERSSKNFLREMDVEHAF 747 (902)
Q Consensus 671 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~A~ 747 (902)
+..++... ..++..+...++..+.... + ..+-. .......+++.+...|++.+|.
T Consensus 100 -~~~~l~~~----~~~d~~~~~~~i~~l~~vt---e--------------~kiflE~erarl~~~La~i~e~~g~~~eA~ 157 (445)
T 4b4t_P 100 -VMEYLKSS----KSLDLNTRISVIETIRVVT---E--------------NKIFVEVERARVTKDLVEIKKEEGKIDEAA 157 (445)
T ss_dssp -HHHHHHHH----CTTHHHHHHHHHHCCSSSS---S--------------CCCCCCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred -HHHHHhcC----CchhHHHHHHHHHHHHHHh---c--------------cchHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 12222221 1223334444443322211 0 00000 0011233445556666777776
Q ss_pred HHHHHHHhc-C-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCchHhH---HHHHHHHHccCChHHH
Q 048778 748 RLRDRIESC-G-GST----TDFYNFLVVELCRAGRIVEADRIMKDIMK----SGVFPAKAI---TSIIGCYCKERKYDDC 814 (902)
Q Consensus 748 ~~~~~~~~~-~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~---~~l~~~~~~~g~~~~A 814 (902)
+++..+... . ..+ ...+..-+..|...+++..|..++.++.. ....|+... ...+..+.+.+++.+|
T Consensus 158 ~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a 237 (445)
T 4b4t_P 158 DILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEV 237 (445)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 666665421 1 111 23444555566666666666666666531 111122111 4445555666666666
Q ss_pred HHHHHHHHH
Q 048778 815 LEFMNLILE 823 (902)
Q Consensus 815 ~~~~~~~~~ 823 (902)
.+.|..+.+
T Consensus 238 ~~~y~e~~~ 246 (445)
T 4b4t_P 238 AQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.85 E-value=12 Score=35.90 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=82.0
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH-HHHHHHHHccCChHHH
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI-TSIIGCYCKERKYDDC 814 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~l~~~~~~~g~~~~A 814 (902)
...+.|++++|+......++.+|.|...-..|...+|-.|+|+.|..-++...+ +.|+... ..+.... =.|
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~l------I~a 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHL------VKA 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHH------HHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHH------HHH
Confidence 345567999999999999999999999999999999999999999999999988 5576553 2222222 234
Q ss_pred HHHHHHHHHcCCCCC----H-HHHHHHHHHH--HhcCCHHHHHHHHHHHHhC
Q 048778 815 LEFMNLILESGFVPS----F-ESHCTVIQGL--QSEGRNKQAKNLVSDLFRY 859 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~----~-~~~~~l~~~l--~~~g~~~~A~~~~~~~~~~ 859 (902)
...-.....-+-.|. + .-...++.++ ...|+.++|.++-.++.+.
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 444444444333442 1 2223344433 3579999999999888655
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.82 E-value=27 Score=37.11 Aligned_cols=94 Identities=10% Similarity=0.171 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH--HH
Q 048778 552 NSFLDVLCKENKLKEEYAMFGKILK--FGLVPS---VVTYTILVDGLFRAGNIALAMSMIEVMKL----AGCPPNV--HT 620 (902)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~--~~ 620 (902)
..|...+...|++.+|..++..+.. .|.... +..|..-++.|...+++..|..++.++.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4566777788888888888887753 222211 34566667778888888888888777532 2222332 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 621 YTVIINGLCQRGRFKEAEMLLFKMF 645 (902)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~m~ 645 (902)
+...+..+...+++.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5666677777888888887777765
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.05 E-value=29 Score=34.49 Aligned_cols=166 Identities=10% Similarity=0.010 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH----HHHHHhCCCCCCHHHHHHHHHH
Q 048778 342 TVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLINGYCKQGRIIAAFEL----LALMEKRTCKPNIRTYNELMEG 417 (902)
Q Consensus 342 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~t~~~li~~ 417 (902)
.++..-|.+.+++++|.+++..-.. .+.+.|+...|.++ ++...+.+++++......++..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444446666667766665544322 13344554444443 3444455666666666666555
Q ss_pred HHhcCCHH-HHHHHHHHHH----hCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048778 418 LCRMNKSY-KAVHLLKRVV----DGG--LFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCK 490 (902)
Q Consensus 418 ~~~~g~~~-~A~~~~~~~~----~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (902)
+......+ .=.+++++++ +.| ..-++.....+...|.+.|++.+|...|-. |...+...+..++.-+.+
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHH
Confidence 54422111 1122222222 222 224667777788888888888888877641 111134444444443333
Q ss_pred c---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048778 491 L---GKPELANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQ 541 (902)
Q Consensus 491 ~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 541 (902)
. |...++ +...-.++ -.|.-.++...|..+|+...+
T Consensus 178 ~~~~~~~~e~--------------dlf~~RaV-L~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 178 QVDDIEDSTV--------------AEFFSRLV-FNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HTTCCCHHHH--------------HHHHHHHH-HHHHHTTBHHHHHHHHHHHHH
T ss_pred hcCCCCcchH--------------HHHHHHHH-HHHHHhcCHHHHHHHHHHHHH
Confidence 3 333222 11111222 234456777778777776543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.60 E-value=31 Score=34.50 Aligned_cols=83 Identities=12% Similarity=0.010 Sum_probs=45.9
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048778 440 FPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITAL 519 (902)
Q Consensus 440 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 519 (902)
.-|+.....+...|.+.+++.+|...|- . |..+....+..++.-+.+.+...++ +...-.++
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHH
Confidence 3466667777888888888888888772 2 3223335665554444333322211 22222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 048778 520 ADGHCKNGKTGEALMIFERMVQ 541 (902)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~~~ 541 (902)
+ .|.-.++...|..+++...+
T Consensus 195 L-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 L-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H-HHHHTTCHHHHHHHHHHHHH
T ss_pred H-HHHHhCCHHHHHHHHHHHHH
Confidence 2 34556777777776666543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.70 E-value=3.6 Score=43.04 Aligned_cols=57 Identities=9% Similarity=0.101 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCchHhH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIM-----KSGVFPAKAI 798 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~ 798 (902)
+.++|...+..+...+|-+...|..|+.+|...|+..+|++.|++.. +.|+.|...+
T Consensus 186 ~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 186 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 78888888888777777788788888888888888888888777764 3366666554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.22 E-value=23 Score=43.14 Aligned_cols=129 Identities=17% Similarity=0.084 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 306 YTVLIKALCDISLTDKALSLFDEMVVKRCKPN----AHTYTVLIDRLCREGKIDEANGMCGKMLQDGHFPGVVTYNVLIN 381 (902)
Q Consensus 306 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 381 (902)
|..++..+-+.+.++.+.++-....+....-+ ...|..+.+.+...|++++|...+-.+..... -......|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHH
Confidence 55666666677777777766665554321111 12466677777777777777777766665432 3445556666
Q ss_pred HHHHcCC------------hHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 048778 382 GYCKQGR------------IIAAFELLALMEKRT--CKPNIRTYNELMEGLCRMNKSYKA-VHLLKRVVD 436 (902)
Q Consensus 382 ~~~~~g~------------~~~A~~~~~~m~~~~--~~p~~~t~~~li~~~~~~g~~~~A-~~~~~~~~~ 436 (902)
.+|..|. .++..+++..-.+.. +.....-|..|=..+...|++-+| .-+++.+.+
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 6665543 344444544322211 111112345555555566666544 445555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.80 E-value=7.3 Score=40.67 Aligned_cols=72 Identities=17% Similarity=0.239 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHHH
Q 048778 586 YTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMF-----DLGVSPNHITYSI 658 (902)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~ 658 (902)
...++..+...|++++|+..+..+.... +-+...|..+|.++...|+..+|++.|+.+. +.|+.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3456677788899999988888887763 6678888899999999999999988888775 3588888765443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.12 E-value=8.2 Score=40.97 Aligned_cols=119 Identities=10% Similarity=-0.053 Sum_probs=77.9
Q ss_pred cHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH---HHHHHHHHccCChHHHH
Q 048778 742 DVEHAFRLRDRIESCG---GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI---TSIIGCYCKERKYDDCL 815 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~l~~~~~~~g~~~~A~ 815 (902)
..++-.+......+.. ..-..++..++..|.+.|++++|.+.|.++.+....+.... ..++..+...+++..+.
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3344444444444432 22334677899999999999999999999987655554444 67778888899999999
Q ss_pred HHHHHHHH---cCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 816 EFMNLILE---SGFVPSFES--HCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 816 ~~~~~~~~---~~~~p~~~~--~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
..++++.. .+-.|+... ...-+..+...+++.+|...|-++....
T Consensus 189 ~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 99988863 332343321 1222334456788988888887765443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.12 E-value=21 Score=43.47 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 622 TVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMV 680 (902)
Q Consensus 622 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 680 (902)
..++..+...+.++-|.++..- ++.+...--.++.+|...|++++|.+.|++..
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3566777788888777654432 24455555567888999999999999998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 902 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 9e-06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 9e-06
Identities = 48/359 (13%), Positives = 108/359 (30%), Gaps = 18/359 (5%)
Query: 320 DKALSLFDEMVVKRCKPNAHTYTVLIDRLCREGKIDEANGMCGKMLQ-DGHFPGVVTYNV 378
+ A + + ++ N +L + ++D + ++ + Y+
Sbjct: 16 EAAERHCMQ-LWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEA--YSN 72
Query: 379 LINGYCKQGRIIAAFELLALMEKRTCKPNIRTYNELMEGLCRMNKSYKAVHLLKRVVDGG 438
L N Y ++G++ A E + N + + + +
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132
Query: 439 LFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELAN 498
+ + + A +I ++++ G+ LA
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKA---CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189
Query: 499 GFFGLMVKKGISPDEATI-TALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDV 557
F V + P+ L + + A+ + R + V + V
Sbjct: 190 HHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-SPNHAVVHGNLACV 246
Query: 558 LCKENKLKEEYAMFGKILKFGLVP-SVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPP 616
++ + + + ++ L P Y L + L G++A A L CP
Sbjct: 247 YYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTA-LRLCPT 303
Query: 617 NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHI-TYSILVRAHASTGRLDHAFK 674
+ + + N ++G +EA L K ++ P +S L G+L A
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALM 360
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 902 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.3 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.28 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.22 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.13 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.12 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.08 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.07 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.05 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.01 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.0 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.76 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.72 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.68 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.67 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.65 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.56 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.56 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.53 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.52 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.52 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.49 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.49 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.45 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.39 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.26 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.22 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.17 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.13 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.1 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.1 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.09 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.05 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.05 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.02 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.99 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.97 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.92 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.91 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.9 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.83 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.83 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.72 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.64 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.53 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.47 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.32 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.29 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.24 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.06 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.47 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.27 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.0 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.84 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.23 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.98 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.11 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 88.62 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5.3e-21 Score=205.41 Aligned_cols=380 Identities=13% Similarity=0.054 Sum_probs=273.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048778 450 VDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPELANGFFGLMVKKGISPDEATITALADGHCKNGKT 529 (902)
Q Consensus 450 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 529 (902)
...+.+.|++++|.+.++++.+.. +.+..++..+...|.+.|++++|...+++..+.. +-+..++..+...|.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 345556677777777777766543 3355666666677777777777777777766653 22556667777777777777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048778 530 GEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVM 609 (902)
Q Consensus 530 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (902)
++|...+....+... .+..............+....+............ ................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHh
Confidence 777777777666432 3333344444444455555555555554444322 23444445555666777778888877777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 048778 610 KLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSN 689 (902)
Q Consensus 610 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 689 (902)
.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+..
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 238 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHH
Confidence 7653 4456777778888888888888888888887653 4457788888888888899999998888887742 34566
Q ss_pred HHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048778 690 VYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVV 769 (902)
Q Consensus 690 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 769 (902)
.+..+...+.+.| ++++|...|+++++.+|.++.+|..++.
T Consensus 239 ~~~~l~~~~~~~~---------------------------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~ 279 (388)
T d1w3ba_ 239 VHGNLACVYYEQG---------------------------------------LIDLAIDTYRRAIELQPHFPDAYCNLAN 279 (388)
T ss_dssp HHHHHHHHHHHTT---------------------------------------CHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---------------------------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 7777777777777 8999999999999888888889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCH
Q 048778 770 ELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRN 846 (902)
Q Consensus 770 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~ 846 (902)
.+...|++++|++.++.+.... |+... ..++.++...|++++|+..++++++. .|+ ..++..++.+|.+.|++
T Consensus 280 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~ 355 (388)
T d1w3ba_ 280 ALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKL 355 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHcCCHHHHHHHHHhhhccC--CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 9999999999999998888743 44433 88888899999999999999988774 554 57788888999999999
Q ss_pred HHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCc
Q 048778 847 KQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDE 880 (902)
Q Consensus 847 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 880 (902)
++|+..++++++..+. +...|..++..|.+.|+
T Consensus 356 ~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 356 QEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 9999999998776533 35567788888877764
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.4e-20 Score=202.13 Aligned_cols=377 Identities=15% Similarity=0.082 Sum_probs=248.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 048778 417 GLCRMNKSYKAVHLLKRVVDGGLFPDEITYNILVDGFCREGQLDIALKIFNSMSIFGLVPDGFTFTSIIDGLCKLGKPEL 496 (902)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 496 (902)
.+.+.|++++|.+.++++.+..+ .+...+..+...|.+.|++++|...+++..+.. +.+..+|..+...|.+.|++++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 34444555555555555544321 234445555555555555555555555555443 2344555555566666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048778 497 ANGFFGLMVKKGISPDEATITALADGHCKNGKTGEALMIFERMVQNTDLKTPHVLNSFLDVLCKENKLKEEYAMFGKILK 576 (902)
Q Consensus 497 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (902)
|...+....+... .+..............+....+............ ................+....+...+.....
T Consensus 86 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 86 AIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhhc
Confidence 6666665555432 2333333333334444444444444443333221 3333344445555566666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 048778 577 FGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITY 656 (902)
Q Consensus 577 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 656 (902)
.. +.+...+..+...+...|++++|...+++..+.. +-+...|..+...+...|++++|+..+++....+ +.+...+
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 32 2345667777777778888888888888777653 4456677788888888888888888888887654 4567777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSK 735 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (902)
..+...+.+.|++++|+..++++++. .| +..++..+...+...|
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~--------------------------------- 285 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKG--------------------------------- 285 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHS---------------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC---------------------------------
Confidence 77888888888888888888888763 44 5667777777777777
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHH
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDD 813 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~ 813 (902)
++++|.+.++.+....|.+...+..++..+...|++++|++.|+++++ ..|+... ..++.+|...|++++
T Consensus 286 ------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~ 357 (388)
T d1w3ba_ 286 ------SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp ------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred ------CHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888888888888888888888888888888888877 4566554 778888888888888
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 048778 814 CLEFMNLILESGFVPS-FESHCTVIQGLQSEGR 845 (902)
Q Consensus 814 A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~ 845 (902)
|+..++++++. .|+ ..+|..++.+|.+.|+
T Consensus 358 A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 358 ALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 88888888774 564 5778888888877764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=6.4e-14 Score=145.18 Aligned_cols=265 Identities=11% Similarity=0.005 Sum_probs=190.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 589 LVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGR 668 (902)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 668 (902)
....+.+.|++++|+..|+++++.. +-+..+|..+..++...|++++|...+++..+.. +-+...+..++.+|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 4455777888888888888887764 4456778888888888888888888888887653 4457777788888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHH
Q 048778 669 LDHAFKIVSFMVANGCQLNSNVYSALL-AGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAF 747 (902)
Q Consensus 669 ~~~A~~~~~~m~~~g~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 747 (902)
+++|.+.++++.. ..|+........ ...... ...............+...+|.
T Consensus 103 ~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~a~ 156 (323)
T d1fcha_ 103 QRQACEILRDWLR--YTPAYAHLVTPAEEGAGGA------------------------GLGPSKRILGSLLSDSLFLEVK 156 (323)
T ss_dssp HHHHHHHHHHHHH--TSTTTGGGCC---------------------------------------CTTHHHHHHHHHHHHH
T ss_pred ccccccchhhHHH--hccchHHHHHhhhhhhhhc------------------------ccccchhhHHHHHHhhHHHHHH
Confidence 8888888888776 333321110000 000000 0011111222344456889999
Q ss_pred HHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 748 RLRDRIESCGGS--TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 748 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
+.+.++++.+|. ++..+..++..+...|++++|+..+++++.. .|+... ..++.+|...|++++|++.++++++
T Consensus 157 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 234 (323)
T d1fcha_ 157 ELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 234 (323)
T ss_dssp HHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHH
Confidence 999999988744 5678899999999999999999999999984 455544 8899999999999999999999997
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------CcchhHHHHHHHHhcCCcHhHHH
Q 048778 824 SGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI----------EEKAAVLPYIEFLLTGDELGKSI 885 (902)
Q Consensus 824 ~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~a~ 885 (902)
. .| +..+|..++.+|.+.|++++|+..|+++++..+. .....|..+..++...|+.+.+.
T Consensus 235 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 235 L--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp H--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred H--hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5 56 4588999999999999999999999999875221 11224555666666677776554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.8e-13 Score=140.22 Aligned_cols=225 Identities=12% Similarity=0.021 Sum_probs=150.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048778 554 FLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGR 633 (902)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 633 (902)
....+.+.|++++|...|+++++.. +-+..+|..+..+|...|++++|...|++..+.. +-+...|..+..+|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 3444555566666666666655532 1235555556666666666666666666655542 3344555555566666666
Q ss_pred HHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 048778 634 FKEAEMLLFKMFDLGVSPN----------------HITYSILVRAHASTGRLDHAFKIVSFMVANG-CQLNSNVYSALLA 696 (902)
Q Consensus 634 ~~~A~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l~~ 696 (902)
+++|.+.++++.... |+ .......+..+...+.+.+|.+.+.+.++.. -.++..++..+..
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 666666666555421 11 0111112233445567778888888777532 2335667777777
Q ss_pred HHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 048778 697 GLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGR 776 (902)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 776 (902)
.+...| ++++|...+++++...|.+..+|..++..|...|+
T Consensus 181 ~~~~~~---------------------------------------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 221 (323)
T d1fcha_ 181 LFNLSG---------------------------------------EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ 221 (323)
T ss_dssp HHHHTT---------------------------------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHH---------------------------------------HHhhhhcccccccccccccccchhhhhhccccccc
Confidence 777777 99999999999999889999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 777 IVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 777 ~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
+++|++.|+++++ ..|+... ..++.+|.+.|++++|+..++++++
T Consensus 222 ~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 222 SEEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH--HhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999988 4565554 8889999999999999999998886
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=2.9e-10 Score=115.64 Aligned_cols=127 Identities=9% Similarity=0.071 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048778 552 NSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAG-NIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ 630 (902)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 630 (902)
+.+...+.+.+.+++|+.+++++++.. +-+...|+....++...| ++++|+..++...+.. +-+..+|..+...+..
T Consensus 47 ~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 47 DYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHh
Confidence 333344444445555555555554432 112334444444444433 2455555555444432 3334444444444445
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 631 RGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 631 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
.|++++|+..++++++.. +.+...|..++.++.+.|++++|++.++++++
T Consensus 125 l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~ 174 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 174 (315)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred hccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555555555554432 33344444444455555555555555555444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=3.5e-10 Score=115.04 Aligned_cols=246 Identities=10% Similarity=-0.006 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRG-RFKEAEMLLFKMFDLGVSPNHITYSILVR 661 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 661 (902)
...|+.+...+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|+..+++.++.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 3455666666778888899999999988864 556667888888887766 4889999998888764 556888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhh
Q 048778 662 AHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLRE 740 (902)
Q Consensus 662 ~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (902)
++.+.|++++|++.++++++. .| +...|..+...+.+.+
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~-------------------------------------- 160 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFK-------------------------------------- 160 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT--------------------------------------
T ss_pred HHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHH--------------------------------------
Confidence 888889999999999988873 44 6788888888888888
Q ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH
Q 048778 741 MDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGR------IVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 741 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
++++|.+.++++++.+|.+..+|+.++..+.+.++ +++|++.+.++++ ..|+... ..++..+.. ...+
T Consensus 161 -~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~-~~~~ 236 (315)
T d2h6fa1 161 -LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQD-RGLS 236 (315)
T ss_dssp -CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTT-TCGG
T ss_pred -hhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHH--hCCCchHHHHHHHHHHHh-cChH
Confidence 88889999999999999999999988888877765 5788888888888 4465544 455555444 4467
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCc-chhHHHHHHHH
Q 048778 813 DCLEFMNLILESGFVP-SFESHCTVIQGLQS---------EGRNKQAKNLVSDLFRYNGIEE-KAAVLPYIEFL 875 (902)
Q Consensus 813 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~---------~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 875 (902)
++.+.++.+.+....+ +...+..++.+|.. .+.+++|.++++..... ..|- ...|..++..+
T Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~-~DpiR~~yw~~~~~~l 309 (315)
T d2h6fa1 237 KYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE-KDTIRKEYWRYIGRSL 309 (315)
T ss_dssp GCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 8888888887643232 23555566665543 23467888888775433 2332 33455554443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=2.6e-09 Score=111.28 Aligned_cols=294 Identities=13% Similarity=0.051 Sum_probs=190.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHH
Q 048778 555 LDVLCKENKLKEEYAMFGKILKFGLVPS----VVTYTILVDGLFRAGNIALAMSMIEVMKLAGC-PPN----VHTYTVII 625 (902)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li 625 (902)
...+...|++++|..++++.++.....+ ...+..+...|...|++++|+..|++..+... .++ ..++..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3445566677777777766665321111 23456666777777888888887777654210 111 23455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHH
Q 048778 626 NGLCQRGRFKEAEMLLFKMFD----LGVSPN---HITYSILVRAHASTGRLDHAFKIVSFMVANGCQ----LNSNVYSAL 694 (902)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~m~~----~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~l 694 (902)
..+...|++..|...+.+... .+.... ...+..+...+...|+++.+...+......... .....+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 677788888888888777652 211111 235556777888889999998888887763211 122333344
Q ss_pred HHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC-------CCCHHHHHHH
Q 048778 695 LAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG-------GSTTDFYNFL 767 (902)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l 767 (902)
...+...+ +..++...+.+..... +.....+..+
T Consensus 179 ~~~~~~~~---------------------------------------~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T d1hz4a_ 179 IQCSLARG---------------------------------------DLDNARSQLNRLENLLGNGKYHSDWISNANKVR 219 (366)
T ss_dssp HHHHHHHT---------------------------------------CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHhhh---------------------------------------hHHHHHHHHHHHHHHHHHhcccCchHHHHHHHH
Confidence 44444555 7777777666655432 1123456777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHh--H--HHHHHHHHccCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHH
Q 048778 768 VVELCRAGRIVEADRIMKDIMKSGVFPAKA--I--TSIIGCYCKERKYDDCLEFMNLILE----SGFVPS-FESHCTVIQ 838 (902)
Q Consensus 768 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~--~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~ 838 (902)
+..+...|++++|...+++..+.....+.. . ..++.+|...|++++|...+++++. .+..|+ ...+..++.
T Consensus 220 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 299 (366)
T d1hz4a_ 220 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 299 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHH
Confidence 888999999999999999887643322221 1 6688899999999999999998873 344454 377888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC--------cchhHHHHHHHHhcCCcHhHHHHH
Q 048778 839 GLQSEGRNKQAKNLVSDLFRYNGIE--------EKAAVLPYIEFLLTGDELGKSIDL 887 (902)
Q Consensus 839 ~l~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~ 887 (902)
+|...|++++|++.++++++..... .......++..+...|+.+++.+.
T Consensus 300 ~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 300 LYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 9999999999999999987653211 112234455666777877777654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=4.5e-09 Score=103.78 Aligned_cols=216 Identities=9% Similarity=-0.088 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048778 599 IALAMSMIEVMKLAGC-PP--NVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKI 675 (902)
Q Consensus 599 ~~~A~~~~~~m~~~~~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 675 (902)
.+.++..+++...... .+ ...+|..+..+|.+.|++++|+..|++.++.. +-+..+|..++.+|.+.|++++|++.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4455556666655321 11 22466777788888999999999999988764 45688888899999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHH
Q 048778 676 VSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIE 754 (902)
Q Consensus 676 ~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 754 (902)
|+++++. .| +..++..+...+...| ++++|.+.+++++
T Consensus 94 ~~~al~~--~p~~~~a~~~lg~~~~~~g---------------------------------------~~~~A~~~~~~al 132 (259)
T d1xnfa_ 94 FDSVLEL--DPTYNYAHLNRGIALYYGG---------------------------------------RDKLAQDDLLAFY 132 (259)
T ss_dssp HHHHHHH--CTTCTHHHHHHHHHHHHTT---------------------------------------CHHHHHHHHHHHH
T ss_pred hhHHHHH--HhhhhhhHHHHHHHHHHHh---------------------------------------hHHHHHHHHHHHH
Confidence 9998874 44 4567777777787777 9999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHccCC----hHHHHHHHHHHHHcCCCCC-
Q 048778 755 SCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCKERK----YDDCLEFMNLILESGFVPS- 829 (902)
Q Consensus 755 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~p~- 829 (902)
+..|.+......+...+.+.+..+.+..+....... .+......++..+..... .+.+...+..... ..|+
T Consensus 133 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 208 (259)
T d1xnfa_ 133 QDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS--LAEHL 208 (259)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHH
T ss_pred hhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCccc
Confidence 988888888777777777777776666666666552 232222233333322222 2222222222211 1233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048778 830 FESHCTVIQGLQSEGRNKQAKNLVSDLFRYN 860 (902)
Q Consensus 830 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~ 860 (902)
..+|..++.+|...|++++|+..|+++++..
T Consensus 209 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 209 SETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 3677788999999999999999999987654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=4.1e-08 Score=101.87 Aligned_cols=264 Identities=12% Similarity=0.057 Sum_probs=172.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHH
Q 048778 521 DGHCKNGKTGEALMIFERMVQNTDLKT----PHVLNSFLDVLCKENKLKEEYAMFGKILKFGL-VPS----VVTYTILVD 591 (902)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~ 591 (902)
..+...|++++|+.++++.++.....+ ...+..+...+...|++++|...+++..+... .++ ...+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 334455666666666665554321111 12344455566666666666666665543110 011 234455666
Q ss_pred HHHHcCCHHHHHHHHHHHHH----CCCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 048778 592 GLFRAGNIALAMSMIEVMKL----AGCP--PN-VHTYTVIINGLCQRGRFKEAEMLLFKMFDL----GVSPNHITYSILV 660 (902)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~----~~~~--p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~l~ 660 (902)
.+...|++..+...+..... .+.. +. ...+..+...+...|+++.+...+...... +.......+....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 77788888888888776654 1111 11 235556677888899999999988888743 2222345666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhh
Q 048778 661 RAHASTGRLDHAFKIVSFMVAN--GCQLN----SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSS 734 (902)
Q Consensus 661 ~~~~~~g~~~~A~~~~~~m~~~--g~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (902)
..+...|++.++...+.+.... ..... ...+..+...+...+
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 227 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG-------------------------------- 227 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT--------------------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc--------------------------------
Confidence 7788889999998888776642 11111 123444445555656
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCchHhH--HHHHHH
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGST----TDFYNFLVVELCRAGRIVEADRIMKDIMK----SGVFPAKAI--TSIIGC 804 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~--~~l~~~ 804 (902)
+.++|...+++.....+.+ ...+..++..+...|++++|...+++++. .+..|+... ..++.+
T Consensus 228 -------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 300 (366)
T d1hz4a_ 228 -------DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL 300 (366)
T ss_dssp -------CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 9999999999988776332 45567789999999999999999998863 234455444 778999
Q ss_pred HHccCChHHHHHHHHHHHH
Q 048778 805 YCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 805 ~~~~g~~~~A~~~~~~~~~ 823 (902)
|...|++++|.+.++++++
T Consensus 301 ~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 301 YWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998875
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=3.7e-10 Score=116.69 Aligned_cols=84 Identities=5% Similarity=-0.122 Sum_probs=43.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 048778 773 RAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQA 849 (902)
Q Consensus 773 ~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A 849 (902)
..+..+++...+.+... ..|+... ..++..+...|++.+|...+.+..+. .|+ ...+..++.++...|++++|
T Consensus 220 ~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA 295 (334)
T d1dcea1 220 FTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKET 295 (334)
T ss_dssp HHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHH
T ss_pred HhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHH
Confidence 33444455555555544 2232222 44455555555666666665555442 332 35555566666666666666
Q ss_pred HHHHHHHHhCC
Q 048778 850 KNLVSDLFRYN 860 (902)
Q Consensus 850 ~~~~~~~~~~~ 860 (902)
+++++++++.+
T Consensus 296 ~~~~~~ai~ld 306 (334)
T d1dcea1 296 LQYFSTLKAVD 306 (334)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHC
Confidence 66666655543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=6.6e-09 Score=102.59 Aligned_cols=205 Identities=12% Similarity=-0.042 Sum_probs=111.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048778 550 VLNSFLDVLCKENKLKEEYAMFGKILKFGLVPSVVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLC 629 (902)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 629 (902)
++..+...|.+.|++++|...|++.++.. +-+..+|+.+..+|.+.|++++|++.|+++.+.. +.+..++..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 44555566666777777777777666532 2246667777777777777777777777776653 334556666667777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccc
Q 048778 630 QRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLS 709 (902)
Q Consensus 630 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 709 (902)
..|++++|+..+++..+.. +.+......+..++.+.+..+.+..+....... .++...+. ++..+....
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~------- 185 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNI------- 185 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSS-------
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--chhhhhhh-HHHHHHHHH-------
Confidence 7777777777777776543 334444444444444555544444444444432 22111111 111111111
Q ss_pred cccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 710 ISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
...+..+.+...+.......|....+|..++..|...|++++|+..|++++.
T Consensus 186 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 186 ----------------------------SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp ----------------------------CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ----------------------------HHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0011334444443333333344455666677777777777777777777766
Q ss_pred cCCCchHh
Q 048778 790 SGVFPAKA 797 (902)
Q Consensus 790 ~~~~p~~~ 797 (902)
..|+..
T Consensus 238 --~~p~~~ 243 (259)
T d1xnfa_ 238 --NNVHNF 243 (259)
T ss_dssp --TCCTTC
T ss_pred --cCCCCH
Confidence 345443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.05 E-value=1.6e-08 Score=102.43 Aligned_cols=188 Identities=13% Similarity=0.023 Sum_probs=148.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHH
Q 048778 667 GRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHA 746 (902)
Q Consensus 667 g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 746 (902)
+..++|..++++.++...+.+...|...+..+.+.| +.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~---------------------------------------~~~~a 118 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM---------------------------------------KYEKV 118 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT---------------------------------------CHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc---------------------------------------cHHHH
Confidence 455788999999987544446677787888888888 99999
Q ss_pred HHHHHHHHhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHH-HHHccCChHHHHHHHHHHHHc
Q 048778 747 FRLRDRIESCGGSTT-DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIG-CYCKERKYDDCLEFMNLILES 824 (902)
Q Consensus 747 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~ 824 (902)
..+|+++++..|.+. .+|..++....+.|+.++|.++|+++++.++.........+. -+...|+.+.|..+++.+++.
T Consensus 119 ~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~ 198 (308)
T d2onda1 119 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 198 (308)
T ss_dssp HHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 999999999887664 479999999999999999999999999865444433333332 345578999999999999975
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCc--chhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 825 GFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYN-GIEE--KAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 825 ~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
...+...|...+..+...|+.++|..+|+++++.. ..|+ ...|..++..-...|+.+.+.++.+++.+.
T Consensus 199 -~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 199 -YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp -HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred -hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 23356888899999999999999999999998764 3443 346777777777889999999999988654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=5.6e-08 Score=98.35 Aligned_cols=186 Identities=11% Similarity=0.077 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 598 NIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVS 677 (902)
Q Consensus 598 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 677 (902)
..++|..+|++.++...+.+...|...+..+...|++++|..+++++++.........|...+....+.|++++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34556666666655433344455555666666666666666666666654322223456666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHH-HhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhc
Q 048778 678 FMVANGCQLNSNVYSALLAGL-VSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESC 756 (902)
Q Consensus 678 ~m~~~g~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 756 (902)
++++.+ +.+...|....... ...| +.+.|..+|+.+++.
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~---------------------------------------~~~~a~~i~e~~l~~ 198 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSK---------------------------------------DKSVAFKIFELGLKK 198 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSC---------------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhcc---------------------------------------CHHHHHHHHHHHHHh
Confidence 666532 22333333333222 2233 666777777777766
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHh--H-HHHHHHHHccCChHHHHHHHHHHHH
Q 048778 757 GGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGV-FPAKA--I-TSIIGCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 757 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~--~-~~l~~~~~~~g~~~~A~~~~~~~~~ 823 (902)
.|.++..|...+..+...|+.+.|..+|+++++... .|+.. . ...+..-...|+.+.+.++.+++.+
T Consensus 199 ~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 199 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 667777777777777777777777777777666442 23221 1 4444444556777777777776654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.00 E-value=6.9e-09 Score=106.85 Aligned_cols=231 Identities=7% Similarity=-0.059 Sum_probs=161.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHH
Q 048778 595 RAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRG--RFKEAEMLLFKMFDLGVSPNHITYS-ILVRAHASTGRLDH 671 (902)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~ 671 (902)
..|++++|+.+++...+.. +.+...|..+..++...+ ++++|+..++++.+.. +++...+. .....+...|.+++
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHH
Confidence 3445677777777777653 446666766666666654 3678888888777653 34455543 34456666788888
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHH
Q 048778 672 AFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLR 750 (902)
Q Consensus 672 A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 750 (902)
|+..++++++. .| +...|..+...+...|+.+++...+..... ...............+..+++...+
T Consensus 163 Al~~~~~~i~~--~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~a~~~~ 231 (334)
T d1dcea1 163 ELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN---------VLLKELELVQNAFFTDPNDQSAWFY 231 (334)
T ss_dssp HHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH---------HHHHHHHHHHHHHHHCSSCSHHHHH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH---------hHHHHHHHHHHHHHhcchhHHHHHH
Confidence 88888777763 34 566777777777777766655443332211 0001111222334455777888999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 048778 751 DRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP 828 (902)
Q Consensus 751 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 828 (902)
...+...|++...+..++..+...|++++|...+.+..+ ..|+... ..++.+|...|++++|+++++++.+. +|
T Consensus 232 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP 307 (334)
T d1dcea1 232 HRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DP 307 (334)
T ss_dssp HHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CG
T ss_pred HHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--Cc
Confidence 999988899998999999999999999999999999987 5576655 88999999999999999999999984 78
Q ss_pred CH-HHHHHHHHHHHh
Q 048778 829 SF-ESHCTVIQGLQS 842 (902)
Q Consensus 829 ~~-~~~~~l~~~l~~ 842 (902)
+. ..|..+...+.-
T Consensus 308 ~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 308 MRAAYLDDLRSKFLL 322 (334)
T ss_dssp GGHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhH
Confidence 54 566667666654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=1.3e-07 Score=87.33 Aligned_cols=128 Identities=10% Similarity=-0.036 Sum_probs=105.1
Q ss_pred hhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCCh
Q 048778 734 SKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKY 811 (902)
Q Consensus 734 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~ 811 (902)
+..+...|++++|++.|+++ .++++.+|..++.+|...|++++|++.|+++++ +.|+... ..++.+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccH
Confidence 45556667999999999864 477889999999999999999999999999999 5566655 8999999999999
Q ss_pred HHHHHHHHHHHHcCC--------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcch
Q 048778 812 DDCLEFMNLILESGF--------------VPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKA 866 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~--------------~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ 866 (902)
++|+..|+++++... .+. ..++..++.++.+.|++++|.+.++++++....+...
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~ 156 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHS 156 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGG
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchH
Confidence 999999999985310 111 2566778899999999999999999998776665443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=3.8e-07 Score=84.23 Aligned_cols=140 Identities=11% Similarity=-0.032 Sum_probs=112.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhh
Q 048778 660 VRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLR 739 (902)
Q Consensus 660 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (902)
+..+...|++++|++.|.++ .+|+..+|..+...+...|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g------------------------------------- 50 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILK------------------------------------- 50 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTT-------------------------------------
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcC-------------------------------------
Confidence 55667889999999998764 4677888888888888888
Q ss_pred hccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------------ch--HhHHHHHH
Q 048778 740 EMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF--------------PA--KAITSIIG 803 (902)
Q Consensus 740 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------------p~--~~~~~l~~ 803 (902)
++++|++.|+++++.+|.++.+|..++.+|.+.|++++|++.|++++..... .. .....++.
T Consensus 51 --~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~ 128 (192)
T d1hh8a_ 51 --NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 128 (192)
T ss_dssp --CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred --CchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999763211 11 11167888
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 804 CYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 804 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
+|...|++++|.+.++.+.+. .|+. ..+..++|+..+.+
T Consensus 129 ~~~~~~~~~~A~~~l~~A~~~--~~~~-----------~~~~~~~Al~~~~~ 167 (192)
T d1hh8a_ 129 MYAKKEEWKKAEEQLALATSM--KSEP-----------RHSKIDKAMECVWK 167 (192)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--CCSG-----------GGGHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCCc-----------chHHHHHHHHHHHh
Confidence 999999999999999999875 3432 22344666666555
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=1.3e-07 Score=79.18 Aligned_cols=101 Identities=7% Similarity=-0.013 Sum_probs=77.0
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccC
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKER 809 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g 809 (902)
..+..+.+.|++++|+..|+++++.+|.++..|..++.+|...|++++|+..++++++. .|+... ..++.++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHh--ccchhhHHHHHHHHHHHcc
Confidence 34566677778888888888888888888888888888888888888888888888874 454444 77888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 048778 810 KYDDCLEFMNLILESGFVPSF-ESHCTV 836 (902)
Q Consensus 810 ~~~~A~~~~~~~~~~~~~p~~-~~~~~l 836 (902)
++++|+..+++.++. .|+. ..+..+
T Consensus 86 ~~~~A~~~~~~a~~~--~p~~~~~~~~l 111 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKH--EANNPQLKEGL 111 (117)
T ss_dssp CHHHHHHHHHHHHTT--CTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 888888888888764 5543 443333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.67 E-value=2e-07 Score=93.09 Aligned_cols=57 Identities=18% Similarity=0.089 Sum_probs=34.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 625 INGLCQRGRFKEAEMLLFKMFDL----GVSPN-HITYSILVRAHASTGRLDHAFKIVSFMVA 681 (902)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 681 (902)
...|...|++++|.+.|.++.+. +-+++ ..+|..+..+|.+.|++++|.+.+++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~ 105 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence 44566777777777777766531 11111 34566666666667777777666666654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=1.5e-07 Score=84.19 Aligned_cols=117 Identities=9% Similarity=0.024 Sum_probs=85.0
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccC
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKER 809 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g 809 (902)
..+..+++.|++++|...|+++++.+|.+...|..++.+|...|++++|+..|+++++ +.|+... ..++.+|...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHHHHHcC
Confidence 3445566677888888888888888888888888888888888888888888888888 4465544 77888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH--HhcCCHHHHHHH
Q 048778 810 KYDDCLEFMNLILESGFVPS-FESHCTVIQGL--QSEGRNKQAKNL 852 (902)
Q Consensus 810 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~l--~~~g~~~~A~~~ 852 (902)
++++|...++++.+. .|+ ...+..+..+. ...+.+++|+..
T Consensus 93 ~~~eA~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888888888888875 453 34444444332 233445555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=7.9e-07 Score=74.29 Aligned_cols=99 Identities=18% Similarity=0.075 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhh
Q 048778 658 ILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNF 737 (902)
Q Consensus 658 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (902)
.-+..+.+.|++++|+..|++.++. -+.+...|..+..++.+.|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~-~p~~~~~~~~~a~~~~~~~----------------------------------- 51 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKG----------------------------------- 51 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHT-----------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-CCcchhhhhcccccccccc-----------------------------------
Confidence 3456778888899999888888874 2336677888888888888
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH
Q 048778 738 LREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 738 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
++++|+..++++++.+|.++.+|..++.++...|++++|+..|+++++ ..|+...
T Consensus 52 ----~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~~p~~~~ 106 (117)
T d1elwa_ 52 ----DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK--HEANNPQ 106 (117)
T ss_dssp ----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHH
T ss_pred ----cccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHH
Confidence 899999999999988888999999999999999999999999999988 5565543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=4.8e-08 Score=91.81 Aligned_cols=94 Identities=7% Similarity=0.041 Sum_probs=83.4
Q ss_pred chhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHH
Q 048778 728 DDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCY 805 (902)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~ 805 (902)
+.+...+..+++.|++++|+..|+++++.+|.++.+|..++.+|.+.|++++|+..|+++++ +.|+... ..++.+|
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence 33444556666666999999999999999999999999999999999999999999999998 6677665 8899999
Q ss_pred HccCChHHHHHHHHHHHH
Q 048778 806 CKERKYDDCLEFMNLILE 823 (902)
Q Consensus 806 ~~~g~~~~A~~~~~~~~~ 823 (902)
...|++++|+..++++++
T Consensus 83 ~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 83 LEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999999886
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.53 E-value=1.8e-07 Score=77.57 Aligned_cols=91 Identities=8% Similarity=-0.012 Sum_probs=70.3
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHH
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYC 806 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~ 806 (902)
.....+..+.+.|++++|...|+++++.+|.++.+|..++.++.+.|++++|+..|+++++ +.|+... ..++.+|.
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT 95 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHH
Confidence 3445666777778888888888888888888888888888888888888888888888887 4455444 77777788
Q ss_pred ccCChHHHHHHHHHH
Q 048778 807 KERKYDDCLEFMNLI 821 (902)
Q Consensus 807 ~~g~~~~A~~~~~~~ 821 (902)
..|++++|++.+++.
T Consensus 96 ~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 96 NEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888888777765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.52 E-value=2.8e-07 Score=86.42 Aligned_cols=106 Identities=12% Similarity=-0.018 Sum_probs=92.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcch
Q 048778 650 SPNHITYSILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDD 729 (902)
Q Consensus 650 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (902)
.|+...+...+..|.+.|++++|+..|+++++. -+.+...|..+..+|.+.|
T Consensus 1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-~p~~~~~~~~lg~~y~~~~--------------------------- 52 (201)
T d2c2la1 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQ--------------------------- 52 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTT---------------------------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHhHHHHHhhhh---------------------------
Confidence 367777888899999999999999999999874 2346788888888998888
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh
Q 048778 730 YERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 730 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
++++|+..|+++++.+|.++.+|..++.+|...|++++|+..|+++++ +.|+..
T Consensus 53 ------------~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~--l~p~~~ 106 (201)
T d2c2la1 53 ------------QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS--LAKEQR 106 (201)
T ss_dssp ------------CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTT
T ss_pred ------------hhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccH
Confidence 999999999999999999999999999999999999999999999987 445433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.52 E-value=0.00013 Score=70.95 Aligned_cols=80 Identities=10% Similarity=-0.066 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHc----cCChHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCR----AGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCK----ERKYDD 813 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~----~g~~~~ 813 (902)
+...+...++...+ ..++.++..|+..|.. ..++++|+..|+++.+.| .......|+.+|.. ..+.++
T Consensus 161 ~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~ 236 (265)
T d1ouva_ 161 DLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQ 236 (265)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTT
T ss_pred ccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHH
Confidence 45555555555554 2345555555555544 345556666666555533 22222445555543 225555
Q ss_pred HHHHHHHHHHcC
Q 048778 814 CLEFMNLILESG 825 (902)
Q Consensus 814 A~~~~~~~~~~~ 825 (902)
|.++|+++.+.|
T Consensus 237 A~~~~~kAa~~g 248 (265)
T d1ouva_ 237 AIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc
Confidence 555555555444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=1.8e-06 Score=76.87 Aligned_cols=100 Identities=13% Similarity=0.011 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhh
Q 048778 657 SILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKN 736 (902)
Q Consensus 657 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (902)
...+..|.+.|++++|+..|+++++.. +.+...|..+..++...|
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~---------------------------------- 58 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTE---------------------------------- 58 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTT----------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhcc----------------------------------
Confidence 344667888999999999999998742 336777888888888888
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
++++|...|+++++.+|.+..+|..++.++...|++++|+..++++... .|+...
T Consensus 59 -----~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~--~p~~~~ 113 (159)
T d1a17a_ 59 -----CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--KPHDKD 113 (159)
T ss_dssp -----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred -----ccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHH
Confidence 9999999999999999999999999999999999999999999999884 455443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.49 E-value=0.00012 Score=71.18 Aligned_cols=230 Identities=11% Similarity=-0.055 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 048778 583 VVTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQ----RGRFKEAEMLLFKMFDLGVSPNHITYSI 658 (902)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 658 (902)
+..+..|...+.+.+++++|++.|++..+.| |...+..|...|.. ..+...|..+++.....+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4455556666777788888888888887765 55555566666665 557778888888777655 3333444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhh
Q 048778 659 LVRAHAS----TGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSS 734 (902)
Q Consensus 659 l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (902)
+...+.. ..+.+.|...++...+.|... ....+...+......
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~------------------------------ 122 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGKVV------------------------------ 122 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSS------------------------------
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCCcc------------------------------
Confidence 4444432 467788888888887654322 222232233222100
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHc---
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCR----AGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCK--- 807 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~--- 807 (902)
......|...+..... +.+...+..|+..|.. ..+...+...++...+.| .......++..|..
T Consensus 123 -----~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g--~~~A~~~lg~~y~~g~~ 193 (265)
T d1ouva_ 123 -----TRDFKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEG 193 (265)
T ss_dssp -----CCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCS
T ss_pred -----cchhHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhcccccc--ccccccchhhhcccCcc
Confidence 0166777777777665 4667778888888876 346778888888887743 12222666666664
Q ss_pred -cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCC
Q 048778 808 -ERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQS----EGRNKQAKNLVSDLFRYNGIE 863 (902)
Q Consensus 808 -~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~~~ 863 (902)
..++++|+.++++..+.| ++..+..|+.+|.. ..+.++|.++|+++.+.|..+
T Consensus 194 ~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 194 ATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 568899999999988865 34566677777764 347888999999887777543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.45 E-value=8.8e-07 Score=88.31 Aligned_cols=167 Identities=10% Similarity=-0.033 Sum_probs=121.1
Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CchHhH-
Q 048778 729 DYERSSKNFLREMDVEHAFRLRDRIESCG------GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGV---FPAKAI- 798 (902)
Q Consensus 729 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~- 798 (902)
.|...+..+..++++++|.+.|.++.+.. +.-..+|..++.+|.+.|++++|++.++++.+... .+....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 34444455666669999999999998863 22346789999999999999999999998865211 122222
Q ss_pred --HHHHHHHH-ccCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcc-----
Q 048778 799 --TSIIGCYC-KERKYDDCLEFMNLILE----SGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEK----- 865 (902)
Q Consensus 799 --~~l~~~~~-~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~----- 865 (902)
..++..|. ..|++++|+..++++.+ .+-.+. ..++..++.++...|++++|+..++++.........
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 66677774 46999999999998874 221222 366788999999999999999999998776433221
Q ss_pred -hhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 866 -AAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 866 -~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
..+...+..+...|+++.|.+.+++..+..
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 123445556778899999999998876543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=9.4e-07 Score=73.96 Aligned_cols=92 Identities=11% Similarity=0.135 Sum_probs=73.0
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCchHh-H-HHHHHHHHccCCh
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAG---RIVEADRIMKDIMKSGVFPAKA-I-TSIIGCYCKERKY 811 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~-~-~~l~~~~~~~g~~ 811 (902)
+...+++++|.+.|+++++.+|.++.++..++.++.+.+ ++++|+.++++++.....|+.. . ..++.+|.+.|++
T Consensus 9 ~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~ 88 (122)
T d1nzna_ 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhh
Confidence 344459999999999999999999999999999998755 4456999999988754444433 2 7888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCH
Q 048778 812 DDCLEFMNLILESGFVPSF 830 (902)
Q Consensus 812 ~~A~~~~~~~~~~~~~p~~ 830 (902)
++|+++|+++++. .|+.
T Consensus 89 ~~A~~~~~~aL~~--~P~~ 105 (122)
T d1nzna_ 89 EKALKYVRGLLQT--EPQN 105 (122)
T ss_dssp HHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHHHh--CcCC
Confidence 9999999999884 6754
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2.8e-06 Score=72.16 Aligned_cols=90 Identities=17% Similarity=0.262 Sum_probs=62.6
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh--------H-HHHH
Q 048778 732 RSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA--------I-TSII 802 (902)
Q Consensus 732 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--------~-~~l~ 802 (902)
..+..+++.|++++|++.|+++++.+|.+..++..++.+|.+.|++++|+..++++++ +.|+.. + ..++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHH
Confidence 3445555566888888888888888888888888888888888888888888888776 333321 1 3455
Q ss_pred HHHHccCChHHHHHHHHHHHH
Q 048778 803 GCYCKERKYDDCLEFMNLILE 823 (902)
Q Consensus 803 ~~~~~~g~~~~A~~~~~~~~~ 823 (902)
..+...+++++|+.++++.+.
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 556666666666666666654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.26 E-value=4e-06 Score=69.11 Aligned_cols=90 Identities=8% Similarity=-0.067 Sum_probs=80.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhh
Q 048778 658 ILVRAHASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKN 736 (902)
Q Consensus 658 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (902)
.++..+.+.|++++|+..+++.++. .| +...|..+...+.+.+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~---------------------------------- 64 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENE---------------------------------- 64 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTT----------------------------------
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhh----------------------------------
Confidence 4567788999999999999999874 45 6788888888888888
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIM 788 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 788 (902)
++++|+..|+++++.+|.+..+|..|+..|...|++++|++.+++.+
T Consensus 65 -----~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 65 -----KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp -----CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----hHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998864
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=1.2e-05 Score=72.07 Aligned_cols=62 Identities=8% Similarity=0.068 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCY 805 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~ 805 (902)
++++|+..++++++.+|.++.+|..++.+|...|++++|+..|+++++ +.|++.. ..+..+.
T Consensus 77 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 77 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQ 140 (170)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHH
T ss_pred hcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888887 4454443 4444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=5.5e-07 Score=97.29 Aligned_cols=95 Identities=6% Similarity=-0.022 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMN 819 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~ 819 (902)
+.++|...+++.+...+ ..++..|+..+...|++++|+..|+++.+ +.|+... +.++..|...|+..+|+..+.
T Consensus 135 ~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ 210 (497)
T d1ya0a1 135 HTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYC 210 (497)
T ss_dssp --------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66677766666655332 34566677777777777777777777776 4455544 677777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHH
Q 048778 820 LILESGFVPSFESHCTVIQGLQ 841 (902)
Q Consensus 820 ~~~~~~~~p~~~~~~~l~~~l~ 841 (902)
+.+... .|-+.++..|...+.
T Consensus 211 ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 211 RSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHhCC-CCCHHHHHHHHHHHH
Confidence 776542 344566666655553
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1.6e-05 Score=71.26 Aligned_cols=74 Identities=14% Similarity=0.030 Sum_probs=52.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHH
Q 048778 799 TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFL 875 (902)
Q Consensus 799 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 875 (902)
..++.+|.+.|++++|+..++++++. .| ++.+|..++.+|...|++++|+..|+++++..+. +..+...+....
T Consensus 66 ~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 140 (170)
T d1p5qa1 66 LNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 45777788888888888888888875 45 5677788888888888888888888888776543 333443444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=7e-06 Score=68.47 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhh
Q 048778 658 ILVRAHASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNF 737 (902)
Q Consensus 658 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (902)
.+++.+...+++++|.+.|++.+..+ +.+..++..+..++.+.++
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~---------------------------------- 48 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRY---------------------------------- 48 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSS----------------------------------
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcc----------------------------------
Confidence 45556666667777777777666531 3355666666666665440
Q ss_pred hhhccHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH
Q 048778 738 LREMDVEHAFRLRDRIESCGGST--TDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 738 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
.+++++|+++++++++.+|.+ ..+|..|+.+|.+.|++++|++.|+++++ +.|+..-
T Consensus 49 --~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~--~~P~~~~ 107 (122)
T d1nzna_ 49 --NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQ 107 (122)
T ss_dssp --HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred --hHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hCcCCHH
Confidence 115556777777776665433 33666777777777777777777777776 4455443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.10 E-value=2.3e-05 Score=68.77 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
++++|++.++++++.+|.+..+|..++.+|...|++++|+..|+++++ +.|++..
T Consensus 82 ~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~ 136 (153)
T d2fbna1 82 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLD 136 (153)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHH
T ss_pred ccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHH
Confidence 888888888888888888888888888888888888888888888888 4465543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=5.3e-06 Score=70.36 Aligned_cols=98 Identities=12% Similarity=0.077 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCC--------HH
Q 048778 762 DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPS--------FE 831 (902)
Q Consensus 762 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~ 831 (902)
..+..++..+...|++++|+..|.++++. .|+... ..++.+|...|++++|+..++++++. .|+ ..
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~~~~~~~~~~~a~ 80 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQIAK 80 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 34667899999999999999999999994 566555 88999999999999999999999863 221 14
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048778 832 SHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIE 863 (902)
Q Consensus 832 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~ 863 (902)
+|..++..+...|++++|+..+++.+.....+
T Consensus 81 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence 67778889999999999999999987665433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.05 E-value=8.3e-06 Score=70.75 Aligned_cols=70 Identities=16% Similarity=-0.003 Sum_probs=51.5
Q ss_pred hhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCchHhH--HHHHHHH
Q 048778 738 LREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGR----------IVEADRIMKDIMKSGVFPAKAI--TSIIGCY 805 (902)
Q Consensus 738 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~ 805 (902)
-+.+.+++|.+.|+++++.+|.++.++..++.++...++ +++|+..|+++++ +.|+... ..++.+|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHHHH
Confidence 345589999999999999999999999999999886544 4566666666666 3454443 5566655
Q ss_pred HccC
Q 048778 806 CKER 809 (902)
Q Consensus 806 ~~~g 809 (902)
...|
T Consensus 86 ~~~g 89 (145)
T d1zu2a1 86 TSFA 89 (145)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 5443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.05 E-value=1.8e-05 Score=70.90 Aligned_cols=48 Identities=13% Similarity=-0.156 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|+..++++++.+|.++.+|..++.+|...|++++|++.|+++++
T Consensus 92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 677777777777776676777777777777777777777777777766
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.02 E-value=2.8e-05 Score=69.51 Aligned_cols=55 Identities=9% Similarity=-0.002 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
++++|+..++++++.+|.+..+|..++.+|...|++++|+..|+++++ +.|+...
T Consensus 79 ~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~ 133 (168)
T d1kt1a1 79 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKA 133 (168)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHH
T ss_pred hcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHH
Confidence 888888888888888888888888888888888888888888888877 4555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=1.9e-05 Score=70.81 Aligned_cols=86 Identities=16% Similarity=0.068 Sum_probs=60.9
Q ss_pred chHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHH
Q 048778 794 PAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLP 870 (902)
Q Consensus 794 p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 870 (902)
|.... ..++.+|.+.|++++|+..++++++. .| +...|..++.+|...|++++|+..|+++++..+. +..+...
T Consensus 74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~ 150 (169)
T d1ihga1 74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAE 150 (169)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 44444 67788888888888888888888874 45 4578888888888889999998888888877543 3344444
Q ss_pred HHHHHhcCCcHh
Q 048778 871 YIEFLLTGDELG 882 (902)
Q Consensus 871 l~~~~~~~g~~~ 882 (902)
+.....+.....
T Consensus 151 l~~~~~~l~~~~ 162 (169)
T d1ihga1 151 LLKVKQKIKAQK 162 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444443333333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.97 E-value=5.4e-06 Score=79.96 Aligned_cols=123 Identities=14% Similarity=0.100 Sum_probs=89.3
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHH
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDD 813 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~ 813 (902)
...+.|++++|+..+++.++.+|.|...+..|+..|+..|++++|+..++++.+ ..|+... ..+...+...+..++
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHH
Confidence 345667999999999999999999999999999999999999999999999998 5576655 445555544333333
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048778 814 CLEFMNLILESGFVPS-FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNG 861 (902)
Q Consensus 814 A~~~~~~~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 861 (902)
+..-.......+ .|+ ...+...+..+...|+.++|.+.++++.+...
T Consensus 83 a~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 83 FAQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp HTTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 222111111111 232 24445556778889999999999999877654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.92 E-value=1.5e-05 Score=69.06 Aligned_cols=104 Identities=5% Similarity=-0.074 Sum_probs=69.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhcc
Q 048778 663 HASTGRLDHAFKIVSFMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMD 742 (902)
Q Consensus 663 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (902)
|-+.+.+++|++.++..++. -+.+..++..+..++...++...+. -..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~-~P~~~~~~~~~g~~l~~~~~~~~~~-----------------------------e~~~~ 56 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS-NPLDADNLTRWGGVLLELSQFHSIS-----------------------------DAKQM 56 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHSCHH-----------------------------HHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh-CCcchHHHHHHHHHHHHhhhhhhhh-----------------------------HHHHH
Confidence 34456677777777777763 1335566666666665544211110 01227
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHcCCCchHhH
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGR-----------IVEADRIMKDIMKSGVFPAKAI 798 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~ 798 (902)
+++|+..|+++++.+|.+..+|..++.+|...|+ +++|.+.|+++++ +.|+...
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~ 121 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTH 121 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHH
Confidence 8999999999999999999999999999987654 4566666666666 4455443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=2.4e-06 Score=92.18 Aligned_cols=164 Identities=13% Similarity=0.004 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048778 600 ALAMSMIEVMKLAGCPPNVHTYTVIING--LCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAFKIVS 677 (902)
Q Consensus 600 ~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 677 (902)
..+.+.++...+....++..-....... ....+.++.|+..+....+.. +++...+..+...+.+.|+.++|...+.
T Consensus 66 ~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 144 (497)
T d1ya0a1 66 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQS 144 (497)
T ss_dssp HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CC
T ss_pred HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence 4455666665544323332222111111 122344555555444443332 3445667777788888888888887777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC
Q 048778 678 FMVANGCQLNSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG 757 (902)
Q Consensus 678 ~m~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 757 (902)
...+. .| ...+..+...+...+ ++++|...|+++++..
T Consensus 145 ~al~~--~~-~~~~~~LG~l~~~~~---------------------------------------~~~~A~~~y~~A~~l~ 182 (497)
T d1ya0a1 145 SSCSY--IC-QHCLVHLGDIARYRN---------------------------------------QTSQAESYYRHAAQLV 182 (497)
T ss_dssp HHHHH--HH-HHHHHHHHHHHHHTT---------------------------------------CHHHHHHHHHHHHHHC
T ss_pred HHhCC--CH-HHHHHHHHHHHHHcc---------------------------------------cHHHHHHHHHHHHHHC
Confidence 66542 12 245566777777777 8999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHcc
Q 048778 758 GSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKE 808 (902)
Q Consensus 758 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~ 808 (902)
|.+..+|+.|+..+...|+..+|+..|.+++. +.|+... .+|...+.+.
T Consensus 183 P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 183 PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999887 4444333 6676666543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.90 E-value=6.8e-05 Score=66.85 Aligned_cols=126 Identities=16% Similarity=0.050 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC---C--Cch--------H-hH-HHHHHHHHccCChHHHHHHHHHHHHcCCCC-
Q 048778 765 NFLVVELCRAGRIVEADRIMKDIMKSG---V--FPA--------K-AI-TSIIGCYCKERKYDDCLEFMNLILESGFVP- 828 (902)
Q Consensus 765 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~--~p~--------~-~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p- 828 (902)
...|..+.+.|++++|+..|++++..- . .+. . .. ..++.+|.+.|++++|+..++++++. .|
T Consensus 19 ~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l--~p~ 96 (168)
T d1kt1a1 19 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--DSA 96 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc--ccc
Confidence 334555566666666666665554210 0 000 0 11 45778888888888888888888875 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHh-HHHHHHHHHHh
Q 048778 829 SFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELG-KSIDLLNLIDQ 893 (902)
Q Consensus 829 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~l~~~~~ 893 (902)
+..+|..++.++...|++++|+..++++++..+. +...+..+.....+.+... ...+++..|.+
T Consensus 97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4578888888888888888888888888776543 3334444444433333332 34444444433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.83 E-value=0.00022 Score=62.16 Aligned_cols=128 Identities=10% Similarity=-0.132 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048778 584 VTYTILVDGLFRAGNIALAMSMIEVMKLAGCPPNVHTYTVIINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAH 663 (902)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 663 (902)
..+......+.+.|++.+|+..|.+++..- +... ............. ....+|..+..+|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~~~~~~-------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILLDKKKN-------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHHHhhhh-------HHHHHHhhHHHHH
Confidence 345555666777777777777777776531 1000 0000000000000 1124677788899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCCcchhhhhhhhhhhhcc
Q 048778 664 ASTGRLDHAFKIVSFMVANGCQL-NSNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHDDDDYERSSKNFLREMD 742 (902)
Q Consensus 664 ~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (902)
.+.|++++|++.++++++. .| +...|..+..++...| +
T Consensus 78 ~~l~~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg---------------------------------------~ 116 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFG---------------------------------------F 116 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHT---------------------------------------C
T ss_pred HHhcccchhhhhhhccccc--cchhhhhhHHhHHHHHHcC---------------------------------------C
Confidence 9999999999999998874 44 6778888888888888 9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048778 743 VEHAFRLRDRIESCGGSTTDFYNFLVVELC 772 (902)
Q Consensus 743 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 772 (902)
+++|...|+++++.+|.|..+...+..+..
T Consensus 117 ~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 117 LEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999888877765544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=0.0087 Score=58.69 Aligned_cols=47 Identities=9% Similarity=-0.013 Sum_probs=31.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048778 624 IINGLCQRGRFKEAEMLLFKMFDLGVSPNHITYSILVRAHASTGRLDHAF 673 (902)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 673 (902)
++..+.+.++......+++...+.| +....+++...|...++++.-.
T Consensus 254 ~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~ 300 (336)
T d1b89a_ 254 AVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALR 300 (336)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHH
Confidence 4444555666666777777766544 4567888888888888865533
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.72 E-value=0.026 Score=55.15 Aligned_cols=134 Identities=10% Similarity=0.078 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCHHHHHHHHHHhhhcCCCCCCHhhHHHHH
Q 048778 196 SAIDYRSVINALCKSGLVRAGEMFFCRVLKHGFCLDTHICTSLVLGHCRGNDLKEAFKVFDVMSKEASYRPNSVTFTTLI 275 (902)
Q Consensus 196 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~li 275 (902)
|..--..+..-|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+. .+..+|..+.
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~~ 76 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVC 76 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHHH
Confidence 33333344444555555555555554332 1344455555555555555554432 2344555555
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 048778 276 HGLCEVGRLDEAFSLKDEMCEKGWQPSTRTYTVLIKALCDISLTDKALSLFDEMVVKRCKPNAHTYTVLIDRLCRE 351 (902)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 351 (902)
..+.+.....-| .+...+...++.....++..|-..|.+++...+++..... -..+...++.++..|++.
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 555544433222 1112222234444445555555556666666555554432 123444555555555553
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.64 E-value=0.00035 Score=62.45 Aligned_cols=117 Identities=8% Similarity=-0.111 Sum_probs=76.9
Q ss_pred hhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChH
Q 048778 735 KNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYD 812 (902)
Q Consensus 735 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~ 812 (902)
......|++++|.+.|.++++..+.+..... ....-+...-..+ .+.... ..++.++...|+++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w~~~~r~~l-----~~~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQFVEPFATAL-----VEDKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTTHHHHHHHH-----HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCch
Confidence 4455566999999999999988644432110 0101111111111 122222 67788888888888
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCcchh
Q 048778 813 DCLEFMNLILESGFVP-SFESHCTVIQGLQSEGRNKQAKNLVSDLF-----RYNGIEEKAA 867 (902)
Q Consensus 813 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 867 (902)
+|+..++++++. .| +...|..++.+|.+.|+.++|+..|+++. +.|+.|+..+
T Consensus 85 ~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 85 AVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 888888888874 45 55778888888888888888888888863 3577777654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.53 E-value=0.0011 Score=59.01 Aligned_cols=46 Identities=7% Similarity=0.030 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDI 787 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 787 (902)
++++|...++++++.+|.+...|..++.+|...|+.++|++.|+++
T Consensus 82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666665
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.47 E-value=6.2e-05 Score=72.30 Aligned_cols=121 Identities=13% Similarity=0.193 Sum_probs=88.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHH
Q 048778 771 LCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDCLEFMNLILESGFVPSF-ESHCTVIQGLQSEGRNK 847 (902)
Q Consensus 771 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~l~~~g~~~ 847 (902)
..+.|++++|++.+++.++ ..|++.. ..++..|+..|++++|...++.+.+. .|+. ..+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccH
Confidence 4567999999999999999 5677766 99999999999999999999999985 6754 56666666666666666
Q ss_pred HHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhcC
Q 048778 848 QAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQVH 895 (902)
Q Consensus 848 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~~ 895 (902)
++..-.......+.+++...+......+...|++++|.+.++++.+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 554433322111222223334444566788999999999999987764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.32 E-value=0.00037 Score=60.93 Aligned_cols=54 Identities=13% Similarity=-0.068 Sum_probs=38.3
Q ss_pred hhhhhccHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 736 NFLREMDVEHAFRLRDRIESCGGST------------TDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 736 ~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
.....|++++|++.|+++++..|.. ..+|+.++.+|...|++++|+..++++++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~ 83 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 83 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence 3444558888888888888765332 35677777777777877777777777764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.00023 Score=55.90 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=43.8
Q ss_pred chhhhhhhhhhhhccHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHh
Q 048778 728 DDYERSSKNFLREMDVEHAFRLRDRIESCGGS-------TTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKA 797 (902)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 797 (902)
+.+..++..+.+.|++++|+..|+++++..|. ...++..|+.+|.+.|++++|+..++++++ +.|+..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~~ 80 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCCH
Confidence 33445556666666777777777777665322 245667777777777777777777777777 445543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.24 E-value=0.00058 Score=59.67 Aligned_cols=96 Identities=16% Similarity=0.075 Sum_probs=66.1
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHhcCCcCCccccccccCCCCCCC
Q 048778 655 TYSIL--VRAHASTGRLDHAFKIVSFMVANG-CQLN----------SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSS 721 (902)
Q Consensus 655 ~~~~l--~~~~~~~g~~~~A~~~~~~m~~~g-~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (902)
+|..+ +..+.+.|++++|++.|++.++.. -.|+ ...|+.+..+|.+.|
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg------------------- 69 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR------------------- 69 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcC-------------------
Confidence 44444 445667788888888888887521 1111 245666777777777
Q ss_pred CCcCCcchhhhhhhhhhhhccHHHHHHHHHHHHhcC-------CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048778 722 RLEHDDDDYERSSKNFLREMDVEHAFRLRDRIESCG-------GS----TTDFYNFLVVELCRAGRIVEADRIMKDIMK 789 (902)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 789 (902)
++++|.+.+++.++.. +. ...+++.++.+|...|++++|++.|+++++
T Consensus 70 --------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 70 --------------------SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------ccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998888887642 11 123567788888888888888888888876
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.0029 Score=49.30 Aligned_cols=79 Identities=10% Similarity=-0.005 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCcCCccccccccCCCCCCCCCcCC
Q 048778 653 HITYSILVRAHASTGRLDHAFKIVSFMVAN-----GCQLN-SNVYSALLAGLVSSNKASGVLSISTSCHSDAGSSRLEHD 726 (902)
Q Consensus 653 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (902)
...+-.++..+.+.|++++|+..+++.++. ...++ ..++..|..++.+.|
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g------------------------ 60 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG------------------------ 60 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcC------------------------
Confidence 344557788889999999999999988753 11122 456777888888888
Q ss_pred cchhhhhhhhhhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048778 727 DDDYERSSKNFLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVE 770 (902)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 770 (902)
++++|+..++++++.+|.++.+++.+...
T Consensus 61 ---------------~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~ 89 (95)
T d1tjca_ 61 ---------------DLDKALLLTKKLLELDPEHQRANGNLKYF 89 (95)
T ss_dssp ---------------CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ---------------ChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 99999999999999999999999887643
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.47 E-value=0.081 Score=41.43 Aligned_cols=139 Identities=14% Similarity=0.140 Sum_probs=96.1
Q ss_pred hhhhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhH--HHHHHHHHccCChHHH
Q 048778 737 FLREMDVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAI--TSIIGCYCKERKYDDC 814 (902)
Q Consensus 737 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~l~~~~~~~g~~~~A 814 (902)
+...|.+++..+++.+.... .+..-|+..+.-....-+-+-..++++.+=+. ..-+.-. ..++.+|...+..
T Consensus 12 ~ildG~ve~Gveii~k~~~s--s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDls~C~Nlk~vv~C~~~~n~~--- 85 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS--STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLDKCQNLKSVVECGVINNTL--- 85 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGGGCSCTHHHHHHHHHTTCC---
T ss_pred HHHhhhHHhHHHHHHHHccc--CCccccceeeeecccccchHHHHHHHHHHhhh-cCchhhhcHHHHHHHHHHhcch---
Confidence 44456999999999998874 45555666676666666666666666655321 1112111 5666666654433
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHHHhc
Q 048778 815 LEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLIDQV 894 (902)
Q Consensus 815 ~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~~~~ 894 (902)
.+..+...+.+.++|+.++-.++++.+++.+ .+.+.....++.+|.+-|...++.+++.+.=++
T Consensus 86 ---------------se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 86 ---------------NEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp ---------------CHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 3445555667888999999999998877744 556667778889999999999999999999988
Q ss_pred Ccc
Q 048778 895 HYR 897 (902)
Q Consensus 895 ~~~ 897 (902)
|.+
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.27 E-value=0.042 Score=45.58 Aligned_cols=112 Identities=8% Similarity=-0.041 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHc----cCChHHHHHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCK----ERKYDDCLEF 817 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~----~g~~~~A~~~ 817 (902)
|+++|.+.|++..+.+ ++..+..|+. ....+.++|+..+++..+.| .......|+..|.. ..+.++|.++
T Consensus 8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g--~~~a~~~Lg~~y~~g~~~~~d~~~A~~~ 81 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQY 81 (133)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhccc--chhhhhhHHHhhhhccccchhhHHHHHH
Confidence 8999999999998875 3444555543 34568899999999998855 22222667776654 4578999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC
Q 048778 818 MNLILESGFVPSFESHCTVIQGLQS----EGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 818 ~~~~~~~~~~p~~~~~~~l~~~l~~----~g~~~~A~~~~~~~~~~~~~ 862 (902)
+++..+.| ++.....|+..|.. ..+.++|..+++++.+.+..
T Consensus 82 ~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 82 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 99998865 34455667776654 45789999999998877743
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.00 E-value=0.13 Score=40.33 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVF 793 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 793 (902)
+-+.-.++++.+.+.+.+++.....++.+|.+.|...++-+++.++-++|++
T Consensus 101 kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 101 KRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 8888888888888877888888888999999999999999999888887753
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.84 E-value=0.099 Score=43.15 Aligned_cols=80 Identities=6% Similarity=-0.036 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCchHhHHHHHHHHHc----cCChHH
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCR----AGRIVEADRIMKDIMKSGVFPAKAITSIIGCYCK----ERKYDD 813 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~l~~~~~~----~g~~~~ 813 (902)
+.++|.+.+++..+. .++.++..|+..|.. ..+.++|.+.|++..+.| .......|+..|.+ ..+.++
T Consensus 38 ~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~ 113 (133)
T d1klxa_ 38 NKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQ 113 (133)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHH
Confidence 455555555555443 334444555554443 234555555555555533 11112444444443 335555
Q ss_pred HHHHHHHHHHcC
Q 048778 814 CLEFMNLILESG 825 (902)
Q Consensus 814 A~~~~~~~~~~~ 825 (902)
|.++++++.+.|
T Consensus 114 A~~~~~~Aa~~G 125 (133)
T d1klxa_ 114 AVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 555555555544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.23 E-value=0.055 Score=43.18 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH
Q 048778 742 DVEHAFRLRDRIESCGGSTT-DFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAK 796 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 796 (902)
++++|+.+++++.+.+|.+. ..+..|+-+|.+.|++++|.+.++.+++ +.|++
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n 106 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 106 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCc
Confidence 56666677766666555443 5666666677777777777777777766 44544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.98 E-value=0.16 Score=40.42 Aligned_cols=62 Identities=18% Similarity=0.068 Sum_probs=49.9
Q ss_pred HHHHHHHHccC---ChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048778 799 TSIIGCYCKER---KYDDCLEFMNLILESGFVPS--FESHCTVIQGLQSEGRNKQAKNLVSDLFRYNGI 862 (902)
Q Consensus 799 ~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 862 (902)
...+|++.+.. +..+|+.+++.+.+. .|+ .+.+..++-+|.+.|++++|.++++++++..+.
T Consensus 39 F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 39 FNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 88888888665 567899999998864 353 367788889999999999999999999877644
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.11 E-value=6.8 Score=39.39 Aligned_cols=52 Identities=10% Similarity=0.029 Sum_probs=29.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHhcCCcHhHHHHHHHHH
Q 048778 837 IQGLQSEGRNKQAKNLVSDLFRYNGIEEKAAVLPYIEFLLTGDELGKSIDLLNLI 891 (902)
Q Consensus 837 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 891 (902)
+..+...|+..+|...+..+... .+ ......+.....+.|.++.|+....+.
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~-~~--~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKS-KS--KTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT-CC--HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHcCCchHHHHHHHHHHhC-CC--HHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 34555667777777776665433 22 223334555556667777776665544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=88.62 E-value=13 Score=37.08 Aligned_cols=107 Identities=10% Similarity=-0.000 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHhHHHHH-------------------
Q 048778 742 DVEHAFRLRDRIESCGGSTTDFYNFLVVELCRAGRIVEADRIMKDIMKSGVFPAKAITSII------------------- 802 (902)
Q Consensus 742 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~l~------------------- 802 (902)
+...+...+..+.............++.++...|+.++|...|..+... ++ .+..|+
T Consensus 300 ~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~-fYG~LAa~~Lg~~~~~~~~~~~~~~ 375 (450)
T d1qsaa1 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG-FYPMVAAQRIGEEYELKIDKAPQNV 375 (450)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS-HHHHHHHHHTTCCCCCCCCCCCSCC
T ss_pred ChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC-hHHHHHHHHcCCCCCCCcCCCCccH
Confidence 6666666666554322333444566666666777777777666666431 22 221111
Q ss_pred -------------HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048778 803 -------------GCYCKERKYDDCLEFMNLILESGFVPSFESHCTVIQGLQSEGRNKQAKNLVSD 855 (902)
Q Consensus 803 -------------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 855 (902)
..+...|...+|...+..+.+. .+......++....+.|.++.|+....+
T Consensus 376 ~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~ 438 (450)
T d1qsaa1 376 DSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIA 438 (450)
T ss_dssp CCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 2345556666666666655542 2233344455556666666666655555
|