Citrus Sinensis ID: 048785

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Protein Sequence
HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAGLAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEEcccHHHHHHHHccccccccccccccccccEEEEEEEEcccccccccccEEEEEEccccccccccEEEccccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHccccEEEEccccccccccccccccccEEEEccccccHHHHHHccccccEEEEEcccccHHHHHHHHHHHcccEEEEEEEEcccHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHccccccEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEEEEcccHHHHHHccccccccccccccccccEEEEEEEEEcccccccccccEEEEEccccccccEEEEEEEcHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHcccEEEEcccccHHHHHcccccccEEEEEcccccHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHccccEEEEEEcc
Coil and Loop (DISEMBL)
hvhvpvptprkdeVLLKVEASSLNAFDWkikkgvarpilprkfpyipatdvaGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESltasrplevsaaegaglplaGLTALEALTQSAglaklgnshvtatcgARNIEFVkslgadevldyktpdgaalkspsgrkydAVIHcargipwstfepnlaengkvidltptpsaMLTFAWQKLTfskkqlvpllvipkgeNLVFLVKLLKEGKIKTLIDSKHLLSKAEDawakgadghatgkiilep
Flexible Loop (DISEMBL)
hvhvpvptprkdevlLKVEASslnafdwkikkgvarpilprkfpyiPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAGLAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTpdgaalkspsgrkYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKaedawakgadghatgkiilep
Low Complexity Region (SEG)
HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSaaegaglplagltalealtQSAGLAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP
Disordered region (IsUnstruct)
*************VLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAGLAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPDG*******GRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAK**************
Disordered Region (DISOPRED)
HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAGLAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP
Disordered Region (DISEMBL)
HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAGLAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP
Disordered Region (DISPRO)
*VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAGLAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAGLAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	280	2.2.26 [Sep-21-2011]
Q9SV68	329	Putative quinone-oxidored	yes	no	1.0	0.851	0.693	1e-116
Q8H0M1	329	Quinone-oxidoreductase ho	N/A	no	1.0	0.851	0.641	1e-109
Q9ZUC1	386	Quinone oxidoreductase-li	no	no	0.910	0.660	0.318	2e-23
Q0VC50	396	Reticulon-4-interacting p	yes	no	0.95	0.671	0.256	1e-17
Q54II4	352	Reticulon-4-interacting p	yes	no	0.953	0.758	0.252	2e-17
Q7T3C7	387	Reticulon-4-interacting p	yes	no	0.960	0.695	0.260	2e-16
Q8WWV3	396	Reticulon-4-interacting p	yes	no	0.946	0.669	0.25	4e-16
Q924D0	396	Reticulon-4-interacting p	yes	no	0.95	0.671	0.253	3e-15
O42909	347	Zinc-type alcohol dehydro	yes	no	0.982	0.792	0.284	6e-14
Q5AUY5	314	Zinc-binding alcohol dehy	no	no	0.542	0.484	0.289	6e-12

>sp|Q9SV68|QORH_ARATH Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1

 Score =  416 bits (1070), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/307 (69%), Positives = 243/307 (79%), Gaps = 27/307 (8%)

Query: 1   HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGS 60
           HV VPVPTP+ +EV LK+EA+SLN  DWKI+KG+ RP LPRKFP IPATDVAGE++EVGS
Sbjct: 23  HVQVPVPTPKSNEVCLKLEATSLNPVDWKIQKGMIRPFLPRKFPCIPATDVAGEVVEVGS 82

Query: 61  EVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
            VKNFKAG  VVA+L+H  GGGLAEFA+  E LT  RP EV AAE A LP+AGLTAL+AL
Sbjct: 83  GVKNFKAGDKVVAVLSHLGGGGLAEFAVATEKLTVKRPQEVGAAEAAALPVAGLTALQAL 142

Query: 121 TQSAGL---------------------------AKLGNSHVTATCGARNIEFVKSLGADE 153
           T  AGL                           AKL N+HVTATCGARNIEFVKSLGADE
Sbjct: 143 TNPAGLKLDGTGKKANILVTAASGGVGHYAVQLAKLANAHVTATCGARNIEFVKSLGADE 202

Query: 154 VLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAW 213
           VLDYKTP+GAALKSPSG+KYDAV+HCA GIP+S FEPNL+ENGKVID+TP P+AM T+A 
Sbjct: 203 VLDYKTPEGAALKSPSGKKYDAVVHCANGIPFSVFEPNLSENGKVIDITPGPNAMWTYAV 262

Query: 214 QKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHAT 273
           +K+T SKKQLVPLL+IPK ENL F+V L+KEGK+KT+IDSKH LSKAEDAWAK  DGHAT
Sbjct: 263 KKITMSKKQLVPLLLIPKAENLEFMVNLVKEGKVKTVIDSKHPLSKAEDAWAKSIDGHAT 322

Query: 274 GKIILEP 280
           GKII+EP
Sbjct: 323 GKIIVEP 329

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q8H0M1|QORH_SPIOL Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/307 (64%), Positives = 236/307 (76%), Gaps = 27/307 (8%)

Query: 1   HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGS 60
           HV V VP P+ DE+LLK+EA++LN  DWKI+KGV RP+LPRKFP IP TDVAGE+++ GS
Sbjct: 23  HVEVAVPDPKSDELLLKIEAATLNPIDWKIQKGVLRPLLPRKFPTIPGTDVAGEVVQAGS 82

Query: 61  EVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
            V  FK G  VVA+L+H +GG LAE+A+ KE+LT +RP EVSAAEGA LP+A LTA +AL
Sbjct: 83  AVNRFKTGDKVVAVLSHATGGALAEYAVAKENLTVARPPEVSAAEGAALPVAALTAHQAL 142

Query: 121 TQSAG---------------------------LAKLGNSHVTATCGARNIEFVKSLGADE 153
           TQ A                            LAKLGN+HVTATCGARN++FVK LGADE
Sbjct: 143 TQFANIKLDGSGERKNILITAASGGVGHYAVQLAKLGNTHVTATCGARNLDFVKGLGADE 202

Query: 154 VLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAW 213
           VLDYKTP+GA+L SPSG+KYD V+H A GIPWSTFEPNL+E GKVIDLTP P+AM+TFAW
Sbjct: 203 VLDYKTPEGASLTSPSGKKYDYVVHGASGIPWSTFEPNLSEAGKVIDLTPGPTAMMTFAW 262

Query: 214 QKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHAT 273
           +KLTFSKKQLVPLL+IPK  N  ++V L+KE K+KT+IDSKH LSK EDAW++   GHAT
Sbjct: 263 KKLTFSKKQLVPLLLIPKIPNFEYVVNLVKEKKLKTVIDSKHPLSKGEDAWSRIMGGHAT 322

Query: 274 GKIILEP 280
           GKII+EP
Sbjct: 323 GKIIIEP 329

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9ZUC1|QORL_ARATH Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 146/311 (46%), Gaps = 56/311 (18%)

Query: 3   HVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEV 62
           ++ VP  ++D+VL+KV A++LN  D K ++G  +       P +P  DVAG +++VGS V
Sbjct: 97  NIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKAT-DSPLPTVPGYDVAGVVVKVGSAV 155

Query: 63  KNFKAGYNVVAILNH--FSG----GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTA 116
           K+ K G  V A ++     G    G LAE+  V+E L A +P  +  A+ AGLPLA  TA
Sbjct: 156 KDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLALKPKNIDFAQAAGLPLAIETA 215

Query: 117 LEALTQ---SAG------------------LAK--LGNSHVTATCGARNIEFVKSLGADE 153
            E L +   SAG                  LAK   G S V AT     +E V+SLGAD 
Sbjct: 216 DEGLVRTEFSAGKSILVLNGAGGVGSLVIQLAKHVYGASKVAATASTEKLELVRSLGADL 275

Query: 154 VLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLT--PTPSAMLTF 211
            +DY   +   L       +DA+  C + +        + E GKV+ LT   TP      
Sbjct: 276 AIDYTKENIEDLPDKYDVVFDAIGMCDKAVKV------IKEGGKVVALTGAVTPPGFR-- 327

Query: 212 AWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSK--HLLSKAEDAWAKGAD 269
                          +V   G+ L  L   ++ GK+K ++D K     S+  DA++    
Sbjct: 328 --------------FVVTSNGDVLKKLNPYIESGKVKPVVDPKGPFPFSRVADAFSYLET 373

Query: 270 GHATGKIILEP 280
            HATGK+++ P
Sbjct: 374 NHATGKVVVYP 384

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q0VC50|RT4I1_BOVIN Reticulon-4-interacting protein 1, mitochondrial OS=Bos taurus GN=RTN4IP1 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 140/339 (41%), Gaps = 73/339 (21%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRK------------FPYIPAT 49
           +H P      +EV++KV A+S+N  D  ++ G     L  K            FP     
Sbjct: 68  IHYP------NEVIIKVHAASINPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGR 121

Query: 50  DVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGL 109
           DV+G ++E G +V+ FK G  V A +  +  G L+EF +V  +  + +P  ++  + A L
Sbjct: 122 DVSGVVMECGLDVRYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPRSLTHTQAASL 181

Query: 110 PLAGLTALEALTQSAGL--------------------------AKLGNSHVTATCGARNI 143
           P   LTA  A+ +  GL                           K  ++HVTA C     
Sbjct: 182 PYVALTAWSAINKVGGLNDRNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDAS 241

Query: 144 EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIP----------WST------ 187
           E V+ LGAD+V+DYK+ +  A +  S + +D ++    G            WS       
Sbjct: 242 ELVRKLGADDVIDYKSGNVEA-QLKSSKPFDFILDNVGGSTETWALKFLKKWSGATYVTL 300

Query: 188 ---FEPNLAENGKVIDLTPT----PSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVK 240
              F  N+   G    +  T     S  L   WQ + +          +  G  L  + +
Sbjct: 301 VTPFLLNMDRLGIADGMLQTGVTVGSKTLKHFWQGVHYRWA-----FFMASGPCLDDIAE 355

Query: 241 LLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILE 279
           L++ GKI+ +I+     SK  +A+ K   GHA GK ++ 
Sbjct: 356 LVEAGKIQPVIEKTFPFSKVPEAFLKVERGHARGKTVIN 394

Appears to be a potent inhibitor of regeneration following spinal cord injury.

Bos taurus (taxid: 9913)

>sp|Q54II4|RT4I1_DICDI Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=rtn4ip1 PE=3 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 140/337 (41%), Gaps = 70/337 (20%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPI--LPRKFPYIPATDVAGEIIEVGSE 61
           +PVP P K +VL+K+ ++S+N  D  ++KG A  I  L  K P I   + +GEI+E+G  
Sbjct: 22  LPVPKPIKSQVLIKIHSTSINPLDNVMRKGYASSIVDLKLKLPIILGRECSGEIVEIGDS 81

Query: 62  VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL- 120
           V +++ G  V +    FS G   E+  V ES  + +P  ++  + A +P A LTA  A+ 
Sbjct: 82  VWDYEIGDQVWSASPPFSMGSHCEYITVDESEISLKPKNLTHQQSASIPFASLTAWNAIY 141

Query: 121 ----------TQSAGLAKLGN-----------------SHVTATCGARNIEFVKSLG-AD 152
                     T +  L   GN                 + V+ TC  ++ E +K L   +
Sbjct: 142 NVLPTNKKITTNTKILVNGGNGSVGFFILQLLKKHLNVNQVSTTCNIKHFEKLKKLTLVN 201

Query: 153 EVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAEN-GKVIDLTPTPSAMLTF 211
           E +DY   +   +      K+D + +C  G        N  EN  K ID       ++ F
Sbjct: 202 ETIDY---NNLKINDNDNNKFDLIFNCYDG------GKNQNENEKKCIDALKDGGNLIGF 252

Query: 212 AWQKLTFSKKQLV----PL-------------------------LVIPKGENLVFLVKLL 242
               + FS K  V    P+                         +  P G  L  + KL 
Sbjct: 253 NGPLVKFSDKDGVLSGLPMGMMNQLNSSERIKKQYSKNVHLDYAIFSPSGSTLKQISKLY 312

Query: 243 KEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILE 279
           +   +   ID +  L++ +DA+    + ++ GKII+ 
Sbjct: 313 ENNILIPNIDKQFNLNQIKDAYTCFENSNSNGKIIIN 349

Dictyostelium discoideum (taxid: 44689)

>sp|Q7T3C7|RT4I1_DANRE Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Danio rerio GN=rtn4ip1 PE=2 SV=2

 Score = 86.3 bits (212), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 136/334 (40%), Gaps = 65/334 (19%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRK------------FPYIPAT 49
           +H P      +EV++KV A+ LN  D  ++ G     +  K            FP I   
Sbjct: 54  IHYP------NEVVVKVHAAGLNPIDISMRGGYGAATMAMKRDPLNISQSGGEFPLILGR 107

Query: 50  DVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGL 109
           DV+GEI+E G +VK FK G  V A +  +  G LAEF +V  +  + +P  +   E A +
Sbjct: 108 DVSGEIMECGLDVKYFKPGDQVWAAIPPWKQGSLAEFVVVSGNEVSHKPKSLRHDEAASI 167

Query: 110 PLAGLTALEALTQSAGLAK----------LGNS----------------HVTATCGARNI 143
           P    TA  A+  + GL K          LG S                HVT TC     
Sbjct: 168 PYVAATAWSAIVNTGGLNKDNSAKKRVLILGGSGGVGTFAIQMVKAWGAHVTVTCSQNAE 227

Query: 144 EFVKSLGADEVLDYKT-PDGAALKSPSGRKYDAVIHCARG----------IPWS-----T 187
             V+ LGAD+V+DY   P    LK+    K+D ++    G           PWS     T
Sbjct: 228 RLVRDLGADDVVDYTAGPVEKQLKNL--EKFDLILDSIGGETEKWALDLLKPWSGAKFVT 285

Query: 188 FEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPL---LVIPKGENLVFLVKLLKE 244
                 +N   + L             K+  + ++ V        P G  L  + +++  
Sbjct: 286 LITPFLQNTDRLGLADGMMQSAVTVGCKVVKNLRKGVHYRWGFFAPSGSALDEVSEMVDA 345

Query: 245 GKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL 278
           GK++ +++     ++  +A+ K   GHA GK ++
Sbjct: 346 GKVRPVVEEVFSFAQVPEAFQKVEQGHARGKTVV 379

May be a potent inhibitor of regeneration.

Danio rerio (taxid: 7955)

>sp|Q8WWV3|RT4I1_HUMAN Reticulon-4-interacting protein 1, mitochondrial OS=Homo sapiens GN=RTN4IP1 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 138/340 (40%), Gaps = 75/340 (22%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRK------------FPYIPAT 49
           +H P      +EV++KV A+S+N  D  ++ G     L  K            FP     
Sbjct: 68  IHYP------NEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGR 121

Query: 50  DVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGL 109
           DV+G ++E G +VK FK G  V A +  +  G L+EF +V  +  + +P  ++  + A L
Sbjct: 122 DVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASL 181

Query: 110 PLAGLTALEALTQSAGL--------------------------AKLGNSHVTATCGARNI 143
           P   LTA  A+ +  GL                           K  ++HVTA C     
Sbjct: 182 PYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDAS 241

Query: 144 EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAE--NGKVIDL 201
           E V+ LGAD+V+DYK+      +  S + +D ++    G    T+ P+  +  +G     
Sbjct: 242 ELVRKLGADDVIDYKS-GSVEEQLKSLKPFDFILDNVGGST-ETWAPDFLKKWSGATYVT 299

Query: 202 TPTP----------------------SAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLV 239
             TP                      S  L   W+ + +          +  G  L  + 
Sbjct: 300 LVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWA-----FFMASGPCLDDIA 354

Query: 240 KLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILE 279
           +L+  GKI+ +I+     SK  +A+ K   GHA GK ++ 
Sbjct: 355 ELVDAGKIRPVIEQTFPFSKVPEAFLKVERGHARGKTVIN 394

Appears to be a potent inhibitor of regeneration following spinal cord injury.

Homo sapiens (taxid: 9606)

>sp|Q924D0|RT4I1_MOUSE Reticulon-4-interacting protein 1, mitochondrial OS=Mus musculus GN=Rtn4ip1 PE=1 SV=2

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 137/339 (40%), Gaps = 73/339 (21%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRK------------FPYIPAT 49
           +H P      +EV++KV A+S+N  D  ++ G     L  K            FP     
Sbjct: 68  IHYP------NEVIIKVHAASVNPIDVNMRSGYGATALNMKRDPLHMKTKGEEFPLTLGR 121

Query: 50  DVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGL 109
           DV+G ++E G +VK F+ G  V A +  +  G L+EF +V  +  + +P  ++  + A L
Sbjct: 122 DVSGVVMECGLDVKYFQPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASL 181

Query: 110 PLAGLTALEALTQSAGLA--------------------------KLGNSHVTATCGARNI 143
           P   LTA  A+ +  GL+                          K   +HVTA C     
Sbjct: 182 PYVALTAWSAINKVGGLSDKNCKGKRALILGASGGVGTFAIQVMKAWGAHVTAVCSKDAS 241

Query: 144 EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIP----------WST------ 187
           E V+ LGADEV+DY T      +  S + +D ++    G            WS       
Sbjct: 242 ELVRKLGADEVIDY-TLGSVEEQLKSLKLFDFILDNVGGSTETWALNFLKKWSGATYVTL 300

Query: 188 ---FEPNLAENGKVIDLTPTPSAMLTFA----WQKLTFSKKQLVPLLVIPKGENLVFLVK 240
              F  N+   G    +  T   + T A    WQ + +          +  G  L  + +
Sbjct: 301 VTPFLLNMDRLGVADGMLQTGVTVGTKALKHLWQGVHYRWA-----FFMASGPYLDEIAE 355

Query: 241 LLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILE 279
           L+  GKI+ +I+     S+  +A+ K   GHA GK ++ 
Sbjct: 356 LVDAGKIRPVIERTFPFSEVPEAFLKVERGHARGKTVVN 394

Appears to be a potent inhibitor of regeneration following spinal cord injury.

Mus musculus (taxid: 10090)

>sp|O42909|YBI2_SCHPO Zinc-type alcohol dehydrogenase-like protein C16A3.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16A3.02c PE=3 SV=1

 Score = 78.2 bits (191), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 130/316 (41%), Gaps = 41/316 (12%)

Query: 2   VHVPVPTPRK-DEVLLKVEASSLNAFDWKIK---KGVARPILPRKFPYIPATDVAGEIIE 57
           +H+P P      +VL++V A+S+N  D+K+    + +A+ +   K P IP  D AG ++ 
Sbjct: 33  LHIPNPAELGPYDVLVEVVATSINPLDYKLMNTYQMIAKALF--KLPNIPGYDFAGRVLA 90

Query: 58  VGSEVKNFKAGYNVVAILNH----FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAG 113
           VGSEVK F A   V    +       GG  A   +  +      P  VS  EGAG  +AG
Sbjct: 91  VGSEVKEFSATQRVWGCQSFPRAGRQGGSCATHIVTGDKDVWHLPDGVSFNEGAGFGIAG 150

Query: 114 LTALEAL----------------------TQSAGLAKLGNSHVTATCGARNIEFVKSLGA 151
           LTA E L                      T +  LAK     VT      N++  KSLGA
Sbjct: 151 LTAWEVLVRQMKVKPGTKLVIEGASGGVGTFAVALAKALECEVTTISSTENLDLCKSLGA 210

Query: 152 DEVLDYKTPDGAALKSPSGRKYDAVIHCARG----IPWSTF-EPNLAENGKVIDLTPT-- 204
              LDYK  D    +      YD V  C          S F +P+ A  G   D+T +  
Sbjct: 211 THTLDYK-KDNLVERLADLGPYDFVFDCVNDNVLYRASSKFVKPDGAFFGIGGDITLSYV 269

Query: 205 -PSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDA 263
                 T   + L  S      +L+    E L   V  + +  IKT+IDS +      +A
Sbjct: 270 GSRLSRTLRPRVLGGSSHSYYNILLHVDQEMLRDFVDFVMKHNIKTVIDSVYDFEDTVEA 329

Query: 264 WAKGADGHATGKIILE 279
           + +       GK+I++
Sbjct: 330 FNRLMTHRCKGKVIIK 345

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5AUY5|CIPB_EMENI Zinc-binding alcohol dehydrogenase domain-containing protein cipB OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cipB PE=1 SV=1

 Score = 71.6 bits (174), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 14/166 (8%)

Query: 5   PVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKN 64
           P  TP ++E+L+K  A ++N  D  ++   ++   P  +P I   DVAGE+++VG  V  
Sbjct: 26  PSYTPEENEILVKNHAVAINPVDGSLQ---SKAWWPMNYPTILGQDVAGEVVQVGPNVAR 82

Query: 65  FKAGYNVVA-----ILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEA 119
           F+ G  VV                  + +++ ++ +  P E+S  + A LPL   TA   
Sbjct: 83  FQPGDRVVGHAVGMATKRLQDNAFQAYTILQTNMASQLPSEISYEDAAVLPLGLSTAASG 142

Query: 120 LTQS---AGLAKLG---NSHVTATCGARNIEFVKSLGADEVLDYKT 159
           L Q    +   +LG      V  T   +N ++VK LGA +V DY +
Sbjct: 143 LFQDDVGSNAIQLGVAAGYEVFTTASPKNFDYVKELGASQVFDYHS 188

Involved in osmoadaptation.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
359494786	329	PREDICTED: putative quinone-oxidoreducta	1.0	0.851	0.703	1e-117
224060149	335	predicted protein [Populus trichocarpa]	1.0	0.835	0.686	1e-116
312283475	329	unnamed protein product [Thellungiella h	1.0	0.851	0.690	1e-116
224121506	329	predicted protein [Populus trichocarpa]	1.0	0.851	0.687	1e-115
297790792	329	oxidoreductase [Arabidopsis lyrata subsp	1.0	0.851	0.697	1e-114
15235549	329	putative quinone-oxidoreductase-like pro	1.0	0.851	0.693	1e-114
118488767	329	unknown [Populus trichocarpa]	1.0	0.851	0.680	1e-114
356527330	329	PREDICTED: putative quinone-oxidoreducta	0.996	0.848	0.663	1e-112
356567800	329	PREDICTED: putative quinone-oxidoreducta	0.996	0.848	0.660	1e-111
449464110	329	PREDICTED: quinone-oxidoreductase homolo	1.0	0.851	0.654	1e-111

>gi|359494786|ref|XP_003634840.1| PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Vitis vinifera]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/307 (70%), Positives = 246/307 (80%), Gaps = 27/307 (8%)

Query: 1   HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGS 60
           H  VPVP P KDEVLLK+EA+SLN  DWKI+KG+ RP+ P KFP+IP TDVAGE++EVGS
Sbjct: 23  HAEVPVPAPAKDEVLLKLEAASLNPVDWKIQKGMLRPLFPCKFPHIPVTDVAGEVVEVGS 82

Query: 61  EVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
            VK+FKAG  VV++L+HFSGGGLAEFA+ K+++T SRP EVSAAEGAGLP+AGLTA +AL
Sbjct: 83  GVKDFKAGDKVVSVLSHFSGGGLAEFAVAKKNITVSRPAEVSAAEGAGLPIAGLTAHQAL 142

Query: 121 TQSAG---------------------------LAKLGNSHVTATCGARNIEFVKSLGADE 153
           TQ  G                           LAKLGN+HVTATCGARNI+ VKSLGADE
Sbjct: 143 TQVVGINLDGSGPQKSILITAASGGVGHYAVQLAKLGNTHVTATCGARNIDLVKSLGADE 202

Query: 154 VLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAW 213
           VLDYKTPDGAALKSPSGR +DAVIHCA GIPWSTFEPNL+ NGKVID+TP  SAM+TFA 
Sbjct: 203 VLDYKTPDGAALKSPSGRTFDAVIHCATGIPWSTFEPNLSTNGKVIDITPNASAMVTFAL 262

Query: 214 QKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHAT 273
           +KLTFSKKQLVPLL+ PK ENL  LV L+KEGK+KT+IDSKH LSKAEDAWAK  DGHAT
Sbjct: 263 KKLTFSKKQLVPLLLSPKKENLECLVGLVKEGKLKTVIDSKHPLSKAEDAWAKSIDGHAT 322

Query: 274 GKIILEP 280
           GKII+EP
Sbjct: 323 GKIIVEP 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060149|ref|XP_002300061.1| predicted protein [Populus trichocarpa] gi|222847319|gb|EEE84866.1| predicted protein [Populus trichocarpa]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/313 (68%), Positives = 249/313 (79%), Gaps = 33/313 (10%)

Query: 1   HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPAT------DVAGE 54
           HV VPVP+ ++DEVLLK+EA+SLN  DWK++KG+ RP+LPR+FPYIP T      DVAGE
Sbjct: 23  HVEVPVPSAKRDEVLLKLEATSLNPVDWKMQKGLLRPLLPRRFPYIPETFVATGADVAGE 82

Query: 55  IIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGL 114
           ++EVG  V NFK G  VVAIL+H SGGGLAEF + K+SL  +RP EVSAAEGAGLP+AGL
Sbjct: 83  VVEVGPGVTNFKTGDKVVAILSHISGGGLAEFVVAKKSLPVARPPEVSAAEGAGLPVAGL 142

Query: 115 TALEALTQSAG---------------------------LAKLGNSHVTATCGARNIEFVK 147
           TA +A+TQSAG                           LAKLGN+HVTATCGARNIEFVK
Sbjct: 143 TAHQAVTQSAGVKLDGSGNQKNILITAASGGVGHYAVQLAKLGNTHVTATCGARNIEFVK 202

Query: 148 SLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSA 207
           SLGADEVLDYKTP+GAALKSPSG+KYDAVIHCA GIPWSTFEPNL+ NGKVID+TP PSA
Sbjct: 203 SLGADEVLDYKTPEGAALKSPSGKKYDAVIHCAAGIPWSTFEPNLSANGKVIDITPGPSA 262

Query: 208 MLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKG 267
            +  A++KLTFSKKQLVPLL+IP GENL +LV L+KEGK+KT+IDSKH LS+AEDAWAK 
Sbjct: 263 FMASAFKKLTFSKKQLVPLLLIPNGENLNYLVNLVKEGKLKTVIDSKHPLSRAEDAWAKI 322

Query: 268 ADGHATGKIILEP 280
            DGHATGKII+EP
Sbjct: 323 IDGHATGKIIVEP 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283475|dbj|BAJ34603.1| unnamed protein product [Thellungiella halophila]

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/307 (69%), Positives = 244/307 (79%), Gaps = 27/307 (8%)

Query: 1   HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGS 60
           HV VPVP+P  +EVLLK+EA+SLN  DWKI+KG+ RP LPRKFP IPATDVAGE++EVGS
Sbjct: 23  HVQVPVPSPMSNEVLLKLEATSLNPVDWKIQKGMIRPFLPRKFPCIPATDVAGEVMEVGS 82

Query: 61  EVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
            VKNFKAG  VV++L+H +GGGLAEFA+  E LT  RP EV  AE A LP+AGLTAL+AL
Sbjct: 83  GVKNFKAGDKVVSVLSHLTGGGLAEFAVASEKLTVRRPEEVGPAEAASLPVAGLTALQAL 142

Query: 121 TQSAGL---------------------------AKLGNSHVTATCGARNIEFVKSLGADE 153
           T  AGL                           AKLGN+HVTATCGARNI+FVKSLGADE
Sbjct: 143 TNPAGLKLDGTGHQANILVTAASGGVGHYAVQLAKLGNAHVTATCGARNIDFVKSLGADE 202

Query: 154 VLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAW 213
           VLDYKTP+GAALKSPSG+KYDAVIHCA GIP+STFEPNLA NGKVID+TP PSAM T+A 
Sbjct: 203 VLDYKTPEGAALKSPSGKKYDAVIHCANGIPFSTFEPNLAANGKVIDITPGPSAMWTYAV 262

Query: 214 QKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHAT 273
           +K+T SKKQLVPLL+IPK ENL F+V L+KEGK+KT+IDSKH LSKAE+AWAK  DGHAT
Sbjct: 263 KKITMSKKQLVPLLLIPKAENLEFMVNLVKEGKVKTVIDSKHPLSKAEEAWAKSIDGHAT 322

Query: 274 GKIILEP 280
           GKII++P
Sbjct: 323 GKIIVQP 329

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121506|ref|XP_002330717.1| predicted protein [Populus trichocarpa] gi|222872493|gb|EEF09624.1| predicted protein [Populus trichocarpa]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/307 (68%), Positives = 246/307 (80%), Gaps = 27/307 (8%)

Query: 1   HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGS 60
           HV VPVP+ +KDEVLLK+EA+SLN +D++I+KGV RP LPR FPYIP  D+AGE++ VG 
Sbjct: 23  HVEVPVPSAKKDEVLLKLEATSLNPYDFRIQKGVVRPFLPRSFPYIPGLDIAGEVVAVGP 82

Query: 61  EVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
            V++FK G  VVA+L+  SGGGLAEFA+ K+SL+ +RP EVSAAE AGLP+AGL A EAL
Sbjct: 83  GVEDFKTGDKVVAVLSGSSGGGLAEFAVAKKSLSVARPPEVSAAEAAGLPIAGLAAYEAL 142

Query: 121 TQSAG---------------------------LAKLGNSHVTATCGARNIEFVKSLGADE 153
           TQ AG                           LAKLGN++VTATCGARNIEFVK LGADE
Sbjct: 143 TQCAGVKLDGSGIQKNILITAASGGVGHYAVQLAKLGNTYVTATCGARNIEFVKDLGADE 202

Query: 154 VLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAW 213
           VLDYKTP+GAALKSPSG+KYDAVIHCA GIPWSTFEPNL+ENGKVI L+P PSAM+TFA 
Sbjct: 203 VLDYKTPEGAALKSPSGKKYDAVIHCALGIPWSTFEPNLSENGKVIHLSPGPSAMITFAV 262

Query: 214 QKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHAT 273
           +KLTFSKKQL+PL++ PKGENL  LV L+KEGK+KT+IDSKH LSKAEDAWAKG DGHAT
Sbjct: 263 KKLTFSKKQLMPLIITPKGENLKCLVNLVKEGKLKTVIDSKHPLSKAEDAWAKGIDGHAT 322

Query: 274 GKIILEP 280
           GKII+EP
Sbjct: 323 GKIIVEP 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790792|ref|XP_002863281.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297309115|gb|EFH39540.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/307 (69%), Positives = 243/307 (79%), Gaps = 27/307 (8%)

Query: 1   HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGS 60
           HV VPVPTP+ +EV LK+EA+SLN  DWKI+KG+ RP LPRKFP IPATDVAGE++EVGS
Sbjct: 23  HVQVPVPTPKSNEVCLKLEATSLNPVDWKIQKGMIRPFLPRKFPCIPATDVAGEVVEVGS 82

Query: 61  EVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
            VKNFKAG  VVA+L+H  GGGLAEFA+  E LT  RP EV AAE A LP+AGLTAL+AL
Sbjct: 83  GVKNFKAGDKVVAVLSHLGGGGLAEFAVASEKLTVKRPQEVGAAEAAALPVAGLTALQAL 142

Query: 121 TQSAGL---------------------------AKLGNSHVTATCGARNIEFVKSLGADE 153
           T  AGL                           AKL N+HVTATCGARNI+FVKSLGADE
Sbjct: 143 TNPAGLKLDGTGKKANILVTAASGGVGHYAVQLAKLANAHVTATCGARNIDFVKSLGADE 202

Query: 154 VLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAW 213
           VLDYKTP+GA LKSPSG+KYDAV+HCA GIP+STFEPNL+ENGKVID+TP PSAM T+A 
Sbjct: 203 VLDYKTPEGATLKSPSGKKYDAVVHCANGIPFSTFEPNLSENGKVIDITPGPSAMWTYAV 262

Query: 214 QKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHAT 273
           +K+T SKKQLVPLL+IPK ENL F+V LLKEGK+KT+IDSKH LSKAEDAWAK  DGHAT
Sbjct: 263 KKVTMSKKQLVPLLLIPKAENLEFMVNLLKEGKVKTVIDSKHPLSKAEDAWAKSIDGHAT 322

Query: 274 GKIILEP 280
           GKII+EP
Sbjct: 323 GKIIVEP 329

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235549|ref|NP_193037.1| putative quinone-oxidoreductase-like protein [Arabidopsis thaliana] gi|67460977|sp|Q9SV68.1|QORH_ARATH RecName: Full=Putative quinone-oxidoreductase homolog, chloroplastic gi|15724256|gb|AAL06521.1|AF412068_1 AT4g13010/F25G13_100 [Arabidopsis thaliana] gi|5123942|emb|CAB45500.1| putative protein [Arabidopsis thaliana] gi|7268003|emb|CAB78343.1| putative protein [Arabidopsis thaliana] gi|15028001|gb|AAK76531.1| unknown protein [Arabidopsis thaliana] gi|15912237|gb|AAL08252.1| AT4g13010/F25G13_100 [Arabidopsis thaliana] gi|21436057|gb|AAM51229.1| unknown protein [Arabidopsis thaliana] gi|332657813|gb|AEE83213.1| putative quinone-oxidoreductase-like protein [Arabidopsis thaliana]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/307 (69%), Positives = 243/307 (79%), Gaps = 27/307 (8%)

Query: 1   HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGS 60
           HV VPVPTP+ +EV LK+EA+SLN  DWKI+KG+ RP LPRKFP IPATDVAGE++EVGS
Sbjct: 23  HVQVPVPTPKSNEVCLKLEATSLNPVDWKIQKGMIRPFLPRKFPCIPATDVAGEVVEVGS 82

Query: 61  EVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
            VKNFKAG  VVA+L+H  GGGLAEFA+  E LT  RP EV AAE A LP+AGLTAL+AL
Sbjct: 83  GVKNFKAGDKVVAVLSHLGGGGLAEFAVATEKLTVKRPQEVGAAEAAALPVAGLTALQAL 142

Query: 121 TQSAGL---------------------------AKLGNSHVTATCGARNIEFVKSLGADE 153
           T  AGL                           AKL N+HVTATCGARNIEFVKSLGADE
Sbjct: 143 TNPAGLKLDGTGKKANILVTAASGGVGHYAVQLAKLANAHVTATCGARNIEFVKSLGADE 202

Query: 154 VLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAW 213
           VLDYKTP+GAALKSPSG+KYDAV+HCA GIP+S FEPNL+ENGKVID+TP P+AM T+A 
Sbjct: 203 VLDYKTPEGAALKSPSGKKYDAVVHCANGIPFSVFEPNLSENGKVIDITPGPNAMWTYAV 262

Query: 214 QKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHAT 273
           +K+T SKKQLVPLL+IPK ENL F+V L+KEGK+KT+IDSKH LSKAEDAWAK  DGHAT
Sbjct: 263 KKITMSKKQLVPLLLIPKAENLEFMVNLVKEGKVKTVIDSKHPLSKAEDAWAKSIDGHAT 322

Query: 274 GKIILEP 280
           GKII+EP
Sbjct: 323 GKIIVEP 329

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488767|gb|ABK96194.1| unknown [Populus trichocarpa]

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/307 (68%), Positives = 244/307 (79%), Gaps = 27/307 (8%)

Query: 1   HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGS 60
           HV VPVP+ ++DEVLLK+EA+SLN  DWK++ G+ RP+LP +FPY+P  DVAGE++EVG 
Sbjct: 23  HVEVPVPSAKRDEVLLKLEATSLNPVDWKMQNGLLRPLLPWRFPYVPGADVAGEVVEVGP 82

Query: 61  EVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
            V NFK G  VVAIL+H SGGGLAEF + K+ L  +RP EVSAAEGAGLP+AGLTA +A+
Sbjct: 83  GVTNFKTGDKVVAILSHISGGGLAEFVVAKKGLPVARPPEVSAAEGAGLPVAGLTAHQAV 142

Query: 121 TQSAG---------------------------LAKLGNSHVTATCGARNIEFVKSLGADE 153
           TQSAG                           LAKLGN+HVTATCGARNIEFVKSLGADE
Sbjct: 143 TQSAGVKLDGSGNQKNILITAASGGVGHYAVQLAKLGNTHVTATCGARNIEFVKSLGADE 202

Query: 154 VLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAW 213
           VLDYKTP+GAALKSPSG+KYDAVIHCA GIPWSTFEPNL+ NGKVID+TP  SA +  A+
Sbjct: 203 VLDYKTPEGAALKSPSGKKYDAVIHCAAGIPWSTFEPNLSANGKVIDITPGLSAYMASAF 262

Query: 214 QKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHAT 273
           +KLTFSKKQLVPLL+IP GENL +LV L+KEGK+KT+IDSKH LS+AEDAWAK  DGHAT
Sbjct: 263 KKLTFSKKQLVPLLLIPNGENLNYLVNLVKEGKLKTVIDSKHPLSRAEDAWAKIIDGHAT 322

Query: 274 GKIILEP 280
           GKII+EP
Sbjct: 323 GKIIVEP 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527330|ref|XP_003532264.1| PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic-like [Glycine max]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/306 (66%), Positives = 242/306 (79%), Gaps = 27/306 (8%)

Query: 1   HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGS 60
           HV VP+PTP KDEVL+KVEA+ LN FDWK++K +  P+ P KFPYIP TD+ GE++EVG 
Sbjct: 23  HVEVPLPTPSKDEVLIKVEAAGLNPFDWKVQKRMLWPLFPCKFPYIPGTDIVGEVMEVGQ 82

Query: 61  EVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
            V+ FK G  VVA +N FSGGGLAEFA+ KES+TASRP E SA+E AGLP+AGLTAL+AL
Sbjct: 83  GVRKFKPGDKVVAFVNPFSGGGLAEFAVAKESITASRPSESSASECAGLPVAGLTALQAL 142

Query: 121 TQSAG---------------------------LAKLGNSHVTATCGARNIEFVKSLGADE 153
           T+S G                           LAKLGN+HVTATCGARNIE VKSLGADE
Sbjct: 143 TKSIGIKLDGSGERKNILVTAASGGVGHYAVQLAKLGNTHVTATCGARNIELVKSLGADE 202

Query: 154 VLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAW 213
           V+DYKTPDGAALKSPSG+KYDAVIHC  G PWSTFEPNL  NGKV+D++P+ ++MLTFA 
Sbjct: 203 VIDYKTPDGAALKSPSGKKYDAVIHCVVGFPWSTFEPNLTMNGKVVDISPSSASMLTFAL 262

Query: 214 QKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHAT 273
           +KLTFSKKQLVPLL+IPKGE+L +L+ L+KEGK+KT++DSK+ L+KAEDAWAK  DGHAT
Sbjct: 263 KKLTFSKKQLVPLLLIPKGEDLQYLIDLVKEGKLKTVVDSKYPLTKAEDAWAKSIDGHAT 322

Query: 274 GKIILE 279
           GKII+E
Sbjct: 323 GKIIIE 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567800|ref|XP_003552103.1| PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic-like [Glycine max]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/306 (66%), Positives = 241/306 (78%), Gaps = 27/306 (8%)

Query: 1   HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGS 60
           HV VP+PTP KDEVL+KVEA+S+N FDWK++K +  P+LPRKFP+IP TD+ GE+ EVG 
Sbjct: 23  HVEVPIPTPSKDEVLIKVEAASINPFDWKVQKRMLWPLLPRKFPHIPGTDITGEVTEVGQ 82

Query: 61  EVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
            V+ FK G  VVAI+N F+GGGLAEFA+ KES+TASRP E SA+E A LP+AGLTAL+AL
Sbjct: 83  GVQKFKPGDKVVAIVNPFNGGGLAEFAVAKESVTASRPSETSASECAALPVAGLTALQAL 142

Query: 121 TQSAG---------------------------LAKLGNSHVTATCGARNIEFVKSLGADE 153
           T+S G                           LAKLGN+HVTATCGARNIE VKSLGADE
Sbjct: 143 TKSIGIKLDGSGERKSILVTAASGGVGHYAVQLAKLGNTHVTATCGARNIELVKSLGADE 202

Query: 154 VLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAW 213
           V+DYKTPDGAALKSPSG+KYDAVIHCA G PWSTFEPNL   GKV+D+TP+ ++MLTFA 
Sbjct: 203 VIDYKTPDGAALKSPSGKKYDAVIHCAMGFPWSTFEPNLTVTGKVVDITPSSASMLTFAL 262

Query: 214 QKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHAT 273
           +KLTFSKKQLVPLL+ PKGE+L  L+ L+KEGK+KT++DSK+ L+KAEDAWAK   GHAT
Sbjct: 263 KKLTFSKKQLVPLLLFPKGEDLQHLIHLVKEGKLKTVVDSKYPLTKAEDAWAKSITGHAT 322

Query: 274 GKIILE 279
           GKII+E
Sbjct: 323 GKIIIE 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464110|ref|XP_004149772.1| PREDICTED: quinone-oxidoreductase homolog, chloroplastic-like [Cucumis sativus] gi|449475383|ref|XP_004154434.1| PREDICTED: quinone-oxidoreductase homolog, chloroplastic-like [Cucumis sativus]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/307 (65%), Positives = 241/307 (78%), Gaps = 27/307 (8%)

Query: 1   HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGS 60
           H  VP+P P+ DEVL+KVEA SLN  DWKI+KG+ RP  PRKFP+IP TDVAGE++EVG+
Sbjct: 23  HAEVPIPKPKTDEVLVKVEAVSLNPIDWKIQKGLIRPFFPRKFPHIPGTDVAGEVVEVGA 82

Query: 61  EVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
            VK+ KAG  VV  L+H +GGGLAE+A+ KES+T  RP EV+AA+GA LP+A LTA +AL
Sbjct: 83  GVKSLKAGDKVVTYLSHATGGGLAEYAVGKESVTVYRPPEVTAADGAALPVAALTAHQAL 142

Query: 121 TQSAG---------------------------LAKLGNSHVTATCGARNIEFVKSLGADE 153
           TQ AG                           LAKLGN+HVTATCGARNIEFVKSLGADE
Sbjct: 143 TQVAGVKLDGSGPQSNILITAASGGVGHYAVQLAKLGNTHVTATCGARNIEFVKSLGADE 202

Query: 154 VLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAW 213
           V+DY+TP+GAALKSPSG+KYDAV+HCA GIPWS FEPNL+ NGKVID+TPTP+A+ TFA+
Sbjct: 203 VIDYRTPEGAALKSPSGKKYDAVVHCASGIPWSVFEPNLSPNGKVIDITPTPAALATFAF 262

Query: 214 QKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHAT 273
           +KLTFSKKQLVPLL+  K ENL +L+ L+KE K+KT+IDS++ LSKAEDAWAK  DGHAT
Sbjct: 263 KKLTFSKKQLVPLLMSFKSENLSYLINLIKERKLKTVIDSRYPLSKAEDAWAKSMDGHAT 322

Query: 274 GKIILEP 280
           GKII+EP
Sbjct: 323 GKIIVEP 329

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
TAIR|locus:2123206	329	AT4G13010 [Arabidopsis thalian	0.553	0.471	0.806	1.1e-103
TIGR_CMR|BA_3566	332	BA_3566 "alcohol dehydrogenase	0.353	0.298	0.363	1.3e-19
TIGR_CMR|BA_3435	317	BA_3435 "alcohol dehydrogenase	0.532	0.470	0.272	3.5e-19
ASPGD|ASPL0000065803	357	AN10947 [Emericella nidulans (	0.532	0.417	0.341	4.5e-19
TAIR|locus:2034802	386	AOR "alkenal/one oxidoreductas	0.35	0.253	0.361	9.1e-18
ASPGD|ASPL0000057264	332	AN10098 [Emericella nidulans (	0.532	0.448	0.313	9.6e-18
TIGR_CMR|BA_0176	302	BA_0176 "alcohol dehydrogenase	0.35	0.324	0.339	4.8e-15
TIGR_CMR|BA_3438	335	BA_3438 "alcohol dehydrogenase	0.314	0.262	0.395	4.6e-14
TIGR_CMR|CBU_1023	318	CBU_1023 "alcohol dehydrogenas	0.257	0.226	0.407	5.7e-14
UNIPROTKB|G5EH83	339	MGCH7_ch7g170 "Uncharacterized	0.546	0.451	0.294	5.7e-14

TAIR|locus:2123206 AT4G13010 [Arabidopsis thaliana (taxid:3702)]

 Score = 665 (239.2 bits), Expect = 1.1e-103, Sum P(2) = 1.1e-103
 Identities = 125/155 (80%), Positives = 142/155 (91%)

Query:   126 LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPW 185
             LAKL N+HVTATCGARNIEFVKSLGADEVLDYKTP+GAALKSPSG+KYDAV+HCA GIP+
Sbjct:   175 LAKLANAHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKSPSGKKYDAVVHCANGIPF 234

Query:   186 STFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEG 245
             S FEPNL+ENGKVID+TP P+AM T+A +K+T SKKQLVPLL+IPK ENL F+V L+KEG
Sbjct:   235 SVFEPNLSENGKVIDITPGPNAMWTYAVKKITMSKKQLVPLLLIPKAENLEFMVNLVKEG 294

Query:   246 KIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP 280
             K+KT+IDSKH LSKAEDAWAK  DGHATGKII+EP
Sbjct:   295 KVKTVIDSKHPLSKAEDAWAKSIDGHATGKIIVEP 329

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

TIGR_CMR|BA_3566 BA_3566 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 156 (60.0 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
 Identities = 36/99 (36%), Positives = 54/99 (54%)

Query:     4 VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
             VP+P   + EVL ++ A+S+N  D+KI+ G  + +L  + P I   D AG II+VGS+V 
Sbjct:    19 VPIPEINEHEVLAEIHAASINPIDFKIRDGKVKMLLKYEMPLILGNDFAGVIIKVGSKVT 78

Query:    64 NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVS 102
              FK G  + A       G  AE+  + E   A +P  +S
Sbjct:    79 RFKIGDEIYARPRKNKIGTFAEYIAIHEDDIALKPKNLS 117

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

TIGR_CMR|BA_3435 BA_3435 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 152 (58.6 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
 Identities = 42/154 (27%), Positives = 68/154 (44%)

Query:     2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
             + +  P    ++VL++V A+ +N  DWKI++G+ + ++   FP +   DVAG +  +G  
Sbjct:    18 IEMQTPLLGDNDVLIEVYAAGVNPVDWKIREGLLQDVISYDFPLVLGWDVAGVVAAIGKN 77

Query:    62 VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSXXXXXXXXXXXXXXXXXXX 121
             V  FK G  V +  +    G  AE+  V E   A +P  +S                   
Sbjct:    78 VTVFKVGDEVYSRPDIERNGTYAEYVAVDEKYVAKKPRNLSFEEAASIPLVGLTSWQSLV 137

Query:   122 QSAGLAKLGNS---HV-TATCGARNIEFVKSLGA 151
             + A + K GN    H  +   G   I+  KS GA
Sbjct:   138 KFANVQK-GNKVLIHAGSGGIGTFAIQLAKSFGA 170

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

ASPGD|ASPL0000065803 AN10947 [Emericella nidulans (taxid:162425)]

 Score = 191 (72.3 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
 Identities = 56/164 (34%), Positives = 87/164 (53%)

Query:   126 LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVI-HCARGIP 184
             +AK+    VT TC  RNIE V+ LGADE++DY T +        G  YD VI H   G+P
Sbjct:   193 IAKMLGCQVTTTCSGRNIELVRDLGADEIIDYTTTNVTETLKTKGLVYDHVIDHI--GLP 250

Query:   185 WSTF-EPN--LAENGKVIDLTPTPSAMLTFAWQKLT--F---SKKQLVPLLVIPKGENLV 236
              + + E +  L  +G  + +     ++LT  W+ +T  F    ++  VPL++    E+LV
Sbjct:   251 GNLYAECHHFLKPSGVWVQVGA--GSILTAFWRAITPRFLGGGRRWFVPLMMANSKEDLV 308

Query:   237 FLVKLLKEGKIKTLIDSKHL--LSKAEDAWAKGADGHATGKIIL 278
              +  LLKEGK++T+ D   +      + A+   A G A GKI++
Sbjct:   309 EVGNLLKEGKLRTVKDGNRVWEFGDVKKAYELLASGRARGKIVI 352

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

TAIR|locus:2034802 AOR "alkenal/one oxidoreductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 9.1e-18, Sum P(3) = 9.1e-18
 Identities = 38/105 (36%), Positives = 60/105 (57%)

Query:     3 HVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEV 62
             ++ VP  ++D+VL+KV A++LN  D K ++G  +       P +P  DVAG +++VGS V
Sbjct:    97 NIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKAT-DSPLPTVPGYDVAGVVVKVGSAV 155

Query:    63 KNFKAGYNVVAILNH--FSG----GGLAEFAMVKESLTASRPLEV 101
             K+ K G  V A ++     G    G LAE+  V+E L A +P  +
Sbjct:   156 KDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLALKPKNI 200

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0035671 "enone reductase activity" evidence=IDA

GO:0035798 "2-alkenal reductase (NADP+) activity" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

ASPGD|ASPL0000057264 AN10098 [Emericella nidulans (taxid:162425)]

 Score = 182 (69.1 bits), Expect = 9.6e-18, Sum P(2) = 9.6e-18
 Identities = 48/153 (31%), Positives = 72/153 (47%)

Query:   127 AKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWS 186
             A LG + V  TCG RN EFV+ LGA E+LDY   D  A       K D V+ C  G    
Sbjct:   177 ALLG-ARVVGTCGPRNSEFVRGLGATEILDYHRTDFKAWGLQPENKVDLVVDCVGGKALE 235

Query:   187 TFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGK 246
                  L +NG +I +   P        +    + K  +   + P G++L  + K ++EGK
Sbjct:   236 DAWWTLKDNGTIIGIVQPPEQKRPEDLEVTGVTDKFFI---MSPSGKDLEQVTKFVEEGK 292

Query:   247 IKTLIDSKHLLSKAEDAWAKGADGHATGKIILE 279
                ++DS   L + E  + +   GHA GK++ +
Sbjct:   293 CWPVVDSVWSLEQFEPGYERLESGHARGKVVFD 325

GO:0005622 "intracellular" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

TIGR_CMR|BA_0176 BA_0176 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 130 (50.8 bits), Expect = 4.8e-15, Sum P(3) = 4.8e-15
 Identities = 38/112 (33%), Positives = 62/112 (55%)

Query:     3 HVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPIL---PRKF------PYIP--ATDV 51
             ++  P P+K+EVL+K+ A+S++  D +I+ G   P+L   P +       P  P    ++
Sbjct:    19 NIEKPIPKKNEVLVKIHATSVSTGDCRIR-GFNSPLLFWIPMRLILGLRKPRNPILGVEL 77

Query:    52 AGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKES-LTASRPLEVS 102
             AGEI ++G++V  FK G  + A L   + GG AE+  V ES L   +P  V+
Sbjct:    78 AGEIEDIGTDVTQFKKGDQIFA-LTELNLGGYAEYTCVHESGLITLKPTNVT 128

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

TIGR_CMR|BA_3438 BA_3438 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 149 (57.5 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
 Identities = 36/91 (39%), Positives = 50/91 (54%)

Query:    14 VLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVA 73
             VL+ V+A+S+N  D K++ G    + P +FP I   DVAG +IEVG  V  FK G  V  
Sbjct:    30 VLIDVKATSVNPIDTKMRSGAVSAVAP-EFPAILHGDVAGIVIEVGEGVSKFKCGDEVYG 88

Query:    74 ILNHF--SGGGLAEFAMVKESLTASRPLEVS 102
                 F  +GG LAEF +    L A +P  ++
Sbjct:    89 CAGGFKETGGALAEFMLADARLIAHKPNNIT 119

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

TIGR_CMR|CBU_1023 CBU_1023 "alcohol dehydrogenase, zinc-containing" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 128 (50.1 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
 Identities = 31/76 (40%), Positives = 44/76 (57%)

Query:     2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKG---VARPILPRKFPYIPATDVAGEIIEV 58
             V  P P  RK+++L+KV A+SLN  D+K + G   VA+  L    P     D +GE+IE+
Sbjct:    21 VDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKK-LKNNLPSGLGYDFSGEVIEL 79

Query:    59 GSEVKNFKAGYNVVAI 74
             GS+V N   G  V+ I
Sbjct:    80 GSDVNNVNIGDKVMGI 95

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

UNIPROTKB|G5EH83 MGCH7_ch7g170 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 150 (57.9 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
 Identities = 48/163 (29%), Positives = 76/163 (46%)

Query:   126 LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPW 185
             +AK    HVTATC     +F K LGADE++DYKT D  A     G+ +D  +      P 
Sbjct:   175 IAKQLGCHVTATCSTAKAQFCKDLGADEIIDYKTSDVVAELKKKGQVFDLAVDLVGFSPG 234

Query:   186 STF--EPN-LAENGKVIDLTPTP-SAMLTFAWQKLTF------SKKQLVPLLVIPKGENL 235
             + +   P+ L    K I +     SA++T   + L         K+++   +      +L
Sbjct:   235 NLYTGSPDYLRPEAKYIAVGGAANSAVVTSMVKGLMLPGFLGGGKRKMEFYMTSNNHNDL 294

Query:   236 VFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL 278
               + + L  GKIKT+        + ++A+A+   G A GKII+
Sbjct:   295 SRVSEWLANGKIKTVTHKTFPFEQVKEAFAELKTGRAAGKIII 337

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SV68	QORH_ARATH	1, ., -, ., -, ., -	0.6938	1.0	0.8510	yes	no
Q8H0M1	QORH_SPIOL	1, ., -, ., -, ., -	0.6416	1.0	0.8510	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	280
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	2e-94
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	1e-67
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	1e-49
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	2e-44
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	7e-44
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	3e-36
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	3e-35
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	2e-32
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	4e-30
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	8e-30
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	2e-29
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	1e-26
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	1e-25
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	2e-25
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	3e-24
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	4e-24
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	1e-23
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	4e-20
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	6e-20
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	2e-18
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	2e-18
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	1e-17
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	1e-17
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	3e-17
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	3e-17
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	4e-17
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	7e-17
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	2e-16
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	4e-16
pfam13602	129	pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenas	6e-16
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	5e-15
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	2e-14
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	8e-14
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	5e-13
smart00829	287	smart00829, PKS_ER, Enoylreductase	5e-13
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	6e-13
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	6e-13
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	8e-13
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	3e-12
TIGR02823	323	TIGR02823, oxido_YhdH, putative quinone oxidoreduc	3e-12
cd08288	324	cd08288, MDR_yhdh, Yhdh putative quinone oxidoredu	6e-12
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	1e-11
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	1e-11
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	2e-11
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	3e-11
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	3e-11
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	1e-10
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	2e-10
cd08289	326	cd08289, MDR_yhfp_like, Yhfp putative quinone oxid	3e-10
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	5e-10
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	7e-10
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	1e-09
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	5e-09
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	6e-09
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	1e-08
cd05281	341	cd05281, TDH, Threonine dehydrogenase	3e-08
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	3e-08
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	2e-07
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	5e-07
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	5e-07
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	1e-06
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	1e-06
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	3e-06
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	1e-05
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	1e-05
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	1e-05
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	2e-05
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	2e-05
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	2e-05
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	2e-05
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	1e-04
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	1e-04
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	1e-04
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	1e-04
cd08238	410	cd08238, sorbose_phosphate_red, L-sorbose-1-phosph	3e-04
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	3e-04
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	3e-04
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	3e-04
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	4e-04
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	5e-04
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	5e-04
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	6e-04
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	0.001
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	0.002

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  281 bits (720), Expect = 2e-94
 Identities = 116/305 (38%), Positives = 161/305 (52%), Gaps = 28/305 (9%)

Query: 1   HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGS 60
            V VP+PTP+  EVL+KV A+S+N  DWK+++G  + +L R FP IP  D AGE++ VGS
Sbjct: 16  EVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGS 75

Query: 61  EVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
            V  FK G  V   L    GG LAE+ +  ES  A +P  VS  E A LP+AGLTAL+AL
Sbjct: 76  GVTRFKVGDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQAL 135

Query: 121 TQSAG----------------------LAKLGNSHVTATCGARNIEFVKSLGADEVLDYK 158
             +                        +AK   +HVT  C  RN E V+SLGADEV+DY 
Sbjct: 136 RDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCSTRNAELVRSLGADEVIDYT 195

Query: 159 TPDGAALKSPSGRKYDAVIHCARGIPWSTFE--PNLAENGKVIDLTPTPSAMLT---FAW 213
           T D  AL +  G KYD +       P+S +     L   G+ + +   PS +L       
Sbjct: 196 TEDFVAL-TAGGEKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGLLLVLLLLP 254

Query: 214 QKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHAT 273
             L    ++L   L  P  E+L  L +L++EGK+K +IDS + L  A +A+ +   G A 
Sbjct: 255 LTLGGGGRRLKFFLAKPNAEDLEQLAELVEEGKLKPVIDSVYPLEDAPEAYRRLKSGRAR 314

Query: 274 GKIIL 278
           GK+++
Sbjct: 315 GKVVI 319

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score =  212 bits (541), Expect = 1e-67
 Identities = 100/297 (33%), Positives = 142/297 (47%), Gaps = 29/297 (9%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           VP P P   EVL+KV A+ +N  D KI++G+ +   P   P IP  DVAG ++ VG  V 
Sbjct: 20  VPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVT 79

Query: 64  NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQ- 122
            FK G  V  +     GG  AE+ +V     A +P  +S  E A LPLAGLTA +AL + 
Sbjct: 80  GFKVGDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFEL 139

Query: 123 ---SAG------------------LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPD 161
               AG                  LAK   + V AT  A N +F++SLGADEV+DY   D
Sbjct: 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAANADFLRSLGADEVIDYTKGD 199

Query: 162 GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKK 221
                +P G   DAV+    G   +     +   G+++ +   P      A Q       
Sbjct: 200 FERAAAPGG--VDAVLDTVGGETLARSLALVKPGGRLVSIAGPPP-----AEQAAKRRGV 252

Query: 222 QLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL 278
           +   + V P GE L  L +L++ GK++ ++D    L  A +A  +   GHA GK++L
Sbjct: 253 RAGFVFVEPDGEQLAELAELVEAGKLRPVVDRVFPLEDAAEAHERLESGHARGKVVL 309

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score =  167 bits (424), Expect = 1e-49
 Identities = 99/334 (29%), Positives = 143/334 (42%), Gaps = 66/334 (19%)

Query: 4   VPVPTPRK-DEVLLKVEASSLNAFDWKIKKGVARPILPRK------------FPYIPATD 50
             +P  RK ++VL+KV A+S+N  D  ++ G  R +L +K            FP     D
Sbjct: 21  ARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80

Query: 51  VAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLP 110
            +G ++++GS VK+F+ G  V   +  +S G  AE+ +V E+  + +P  +S  E A LP
Sbjct: 81  CSGVVVDIGSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLP 140

Query: 111 LAGLTALEALTQSAG--------------------------LAKLGNSHVTATCGARNIE 144
            AGLTA  AL    G                          L K   +HVT TC    I 
Sbjct: 141 YAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCSTDAIP 200

Query: 145 FVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARG--IPWSTFEPNLAENGKVIDLT 202
            VKSLGAD+V+DY   D     +  G K+D ++    G    W+     L + G  + L 
Sbjct: 201 LVKSLGADDVIDYNNEDFEEELTERG-KFDVILDTVGGDTEKWAL--KLLKKGGTYVTLV 257

Query: 203 PT----------PSAMLTFAWQKLTFSKKQLVPLL---------VIPKGENLVFLVKLLK 243
                          ML  A       KK +  LL           P G  L  L KL++
Sbjct: 258 SPLLKNTDKLGLVGGMLKSAV---DLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKLVE 314

Query: 244 EGKIKTLIDSKHLLSKAEDAWAKGADGHATGKII 277
           +GKIK +ID      +  +A+ K   GHA GK +
Sbjct: 315 DGKIKPVIDKVFPFEEVPEAYEKVESGHARGKTV 348

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  152 bits (387), Expect = 2e-44
 Identities = 97/314 (30%), Positives = 143/314 (45%), Gaps = 40/314 (12%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
           V VP P P   EVL++V+A+ +N  D  +++G+A P   R  P+IP ++ AG ++ VGS 
Sbjct: 18  VEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPP--VRPLPFIPGSEAAGVVVAVGSG 75

Query: 62  VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT 121
           V  FK G  V A+      GG AE+ +V        P  +S  E A LPLAGLTA  AL 
Sbjct: 76  VTGFKVGDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALF 135

Query: 122 QSAGL-----------------------AKLGNSHVTATCGARNIEFVKSLGADEVLDYK 158
             AGL                         LG + V     +  +E +K LGAD V++Y+
Sbjct: 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYR 195

Query: 159 TPD-GAALKSPS-GRKYDAVIHCARGIPWSTFEPN---LAENGKVI------DLTPTPSA 207
             D    ++  + G+  D V+    G    TF  +   LA  G+++         P P  
Sbjct: 196 EEDFVEQVRELTGGKGVDVVLDTVGG---DTFAASLAALAPGGRLVSIGALSGGPPVPLN 252

Query: 208 MLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKG 267
           +L    ++LT     L         E L  L  LL  GK+K +ID  + L++A  A A  
Sbjct: 253 LLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLKPVIDRVYPLAEAPAAAAHL 312

Query: 268 A-DGHATGKIILEP 280
             +   TGK++L+ 
Sbjct: 313 LLERRTTGKVVLKV 326

Length = 326

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  151 bits (383), Expect = 7e-44
 Identities = 95/313 (30%), Positives = 138/313 (44%), Gaps = 40/313 (12%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
             VP P P   +VL++V AS +N  D KI++G      P   P I   DVAG +  VG  
Sbjct: 18  REVPRPQPGPGQVLVRVHASGVNPLDTKIRRG-GAAARPP-LPAILGCDVAGVVEAVGEG 75

Query: 62  VKNFKAGYNVVAILNHFSG--GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEA 119
           V  F+ G  V        G  G LAE+A+V   L A +P  +S  E A LPL G+TA E 
Sbjct: 76  VTRFRVGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEG 135

Query: 120 LTQSAG----------------------LAKLGNSHVTATCGARNIEFVKSLGADEVLDY 157
           L   A                       LAK   + V AT  +    F +SLGAD ++ Y
Sbjct: 136 LVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASSEKAAFARSLGADPIIYY 195

Query: 158 K-TPDGAALKSPSGRKYDAVIHCARGIPWSTFE---PNLAENGKVIDLTPTPSAMLTFAW 213
           + T      +   GR +D V     G    T +     +A  G+V+ +    +  L    
Sbjct: 196 RETVVEYVAEHTGGRGFDVVFDTVGG---ETLDASFEAVALYGRVVSILGGATHDLAPLS 252

Query: 214 QK-LTFSKKQ-LVPLLVIPK----GENLVFLVKLLKEGKIKTLIDSKHL-LSKAEDAWAK 266
            +  T+S    L+PLL        GE L    +L++ G+++ L+D +   L +A  A A+
Sbjct: 253 FRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLRPLLDPRTFPLEEAAAAHAR 312

Query: 267 GADGHATGKIILE 279
              G A GKI+++
Sbjct: 313 LESGSARGKIVID 325

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  131 bits (331), Expect = 3e-36
 Identities = 93/309 (30%), Positives = 132/309 (42%), Gaps = 37/309 (11%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           + +P P   EVL+KV A+ LN  DWK+            +P++P  D AG ++ VG++V 
Sbjct: 20  IEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA---WSYPHVPGVDGAGVVVAVGAKVT 76

Query: 64  NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQ- 122
            +K G  V    +   GG  AE+ +V        P  +S  E A LP AGLTA +AL + 
Sbjct: 77  GWKVGDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKK 136

Query: 123 -----------SAG----------LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPD 161
                      + G          LAK     V  TC  RN E+VKSLGAD V+DY   D
Sbjct: 137 LRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTCSKRNFEYVKSLGADHVIDYNDED 196

Query: 162 --GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGK--VIDLTPTPSAMLTFAWQKLT 217
                 +   GR  DAV+    G   +   P LA NG    I   P  S    F  + L+
Sbjct: 197 VCERIKEITGGRGVDAVLDTVGGETAAALAPTLAFNGHLVCIQGRPDASPDPPFT-RALS 255

Query: 218 FSKKQLVPLLVIPKGE---NLVF----LVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADG 270
             +  L             +L +    L++LL  GK++ L+       +  +A     D 
Sbjct: 256 VHEVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLEPLVIEVLPFEQLPEALRALKDR 315

Query: 271 HATGKIILE 279
           H  GKI++ 
Sbjct: 316 HTRGKIVVT 324

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score =  129 bits (326), Expect = 3e-35
 Identities = 72/214 (33%), Positives = 91/214 (42%), Gaps = 42/214 (19%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           VPVP P  DEVL+KV+A +LN  DWK +     P     +P I   D AG ++EVGS V 
Sbjct: 19  VPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFIP----SYPAILGCDFAGTVVEVGSGVT 74

Query: 64  NFKAGYNVVAI-----LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALE 118
            FK G  V         N    G   E+ +    LTA  P  +S  E A LP+  +TA  
Sbjct: 75  RFKVGDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAAL 134

Query: 119 ALTQSAG--------------------------------LAKLGNSHVTATCGARNIEFV 146
           AL Q  G                                LAKL    V  T   +N + V
Sbjct: 135 ALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTASPKNFDLV 194

Query: 147 KSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHC 179
           KSLGAD V DY  PD    +++ +G K    + C
Sbjct: 195 KSLGADAVFDYHDPDVVEDIRAATGGKLRYALDC 228

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score =  121 bits (305), Expect = 2e-32
 Identities = 67/202 (33%), Positives = 89/202 (44%), Gaps = 29/202 (14%)

Query: 3   HVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEV 62
            +PVPTP   EVL++V AS +N  D  I+ G A P LP   PY+P +D AG +  VG  V
Sbjct: 19  DLPVPTPGPGEVLVRVHASGVNPVDTYIRAG-AYPGLP-PLPYVPGSDGAGVVEAVGEGV 76

Query: 63  KNFKAGYNVVAILNHFSG--GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
              K G  V      +    G  AE+ +V        P  VS  +GA L +  LTA  AL
Sbjct: 77  DGLKVGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRAL 136

Query: 121 TQSAG----------------------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDY 157
              AG                      LA+   + V AT   A   E V+  GAD V +Y
Sbjct: 137 FHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQAGADAVFNY 196

Query: 158 KTPDGAA--LKSPSGRKYDAVI 177
           +  D A   L + +G+  D +I
Sbjct: 197 RAEDLADRILAATAGQGVDVII 218

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  113 bits (286), Expect = 4e-30
 Identities = 69/256 (26%), Positives = 97/256 (37%), Gaps = 46/256 (17%)

Query: 13  EVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVV 72
           EVL++VEA+ L   D  I++G   P  P K P I   + AG ++EVG  V   K G  VV
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPP--PPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVV 58

Query: 73  AILNHFSG--------------------GGLAEFAMVKESLTASRPLEVSAAEGAGLPLA 112
            + N   G                    GG AE+ +V        P  +S  E A LP  
Sbjct: 59  VLPNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEP 118

Query: 113 GLTALEALTQSAG---------------------LAKLGNSHVTATCG-ARNIEFVKSLG 150
             TA  AL ++                       LAK   + V  T      +E  K LG
Sbjct: 119 LATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELG 178

Query: 151 ADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIP-WSTFEPNLAENGKVIDLTPTPSAM 208
           AD V+DYK  D    L+   G   D VI    G    +     L   G+++ +  T    
Sbjct: 179 ADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGP 238

Query: 209 LTFAWQKLTFSKKQLV 224
                ++L F +  ++
Sbjct: 239 PLDDLRRLLFKELTII 254

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score =  114 bits (287), Expect = 8e-30
 Identities = 90/335 (26%), Positives = 128/335 (38%), Gaps = 91/335 (27%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPY--------IPATDVAGEI 55
           VP P P   EVL++V A+ +N  D          +L R+  Y        I   +VAG +
Sbjct: 20  VPKPAPGPGEVLIRVAAAGVNRAD----------LLQRQGLYPPPPGASDILGLEVAGVV 69

Query: 56  IEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLT 115
           + VG  V  +K G  V A+L   +GGG AE+ +V        P  +S  E A LP    T
Sbjct: 70  VAVGPGVTGWKVGDRVCALL---AGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFT 126

Query: 116 ALEALTQSAG----------------------LAKLGNSHVTATCG-ARNIEFVKSLGAD 152
           A + L Q  G                      LAK   + V AT G    +E  ++LGAD
Sbjct: 127 AWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACRALGAD 186

Query: 153 EVLDYKTPDGAA--LKSPSGRKYDAVIHCARGIPWSTFEPN---LAENGKVI-------- 199
             ++Y+T D A    ++  GR  D ++    G        N   LA +G+++        
Sbjct: 187 VAINYRTEDFAEEVKEATGGRGVDVILDMVGG---DYLARNLRALAPDGRLVLIGLLGGA 243

Query: 200 ----DLTPTPSAMLTFAWQKLTFS---------KKQLVPLL---VIPKGENLVFLVKLLK 243
               DL     A L      LT S         K  L       V P          L  
Sbjct: 244 KAELDL-----APLLRKRLTLTGSTLRSRSLEEKAALAAAFREHVWP----------LFA 288

Query: 244 EGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL 278
            G+I+ +ID    L +A +A  +       GKI+L
Sbjct: 289 SGRIRPVIDKVFPLEEAAEAHRRMESNEHIGKIVL 323

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  113 bits (286), Expect = 2e-29
 Identities = 93/333 (27%), Positives = 134/333 (40%), Gaps = 74/333 (22%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
            PVP P   EVL++V A SLN  D  I  G  R   P K P IP +D AGE++ VG  V 
Sbjct: 20  EPVPEPGPGEVLVRVHAVSLNYRDLLILNG--RYPPPVKDPLIPLSDGAGEVVAVGEGVT 77

Query: 64  NFKAGYNVVAI--LNHFSG----------------GGLAEFAMVKESLTASRPLEVSAAE 105
            FK G  VV     N   G                G LAE+ ++ E      P  +S  E
Sbjct: 78  RFKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEE 137

Query: 106 GAGLPLAGLTALEALTQSAGLAK------LGNSHVTAT-------CGARNI--------- 143
            A LP AGLTA  AL     L         G   V+          GAR I         
Sbjct: 138 AATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKL 197

Query: 144 EFVKSLGADEVLDYKT-PD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNL---AENGK 197
           E  K+LGAD V++Y+T PD     LK   GR  D V+         T   ++   A  G 
Sbjct: 198 ERAKALGADHVINYRTTPDWGEEVLKLTGGRGVDHVVEVGGP---GTLAQSIKAVAPGGV 254

Query: 198 VIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKG-----------ENLVFLVKLLKEGK 246
           +        +++ F    L+  +  ++ L ++ KG                + + ++  +
Sbjct: 255 I--------SLIGF----LSGFEAPVLLLPLLTKGATLRGIAVGSRAQFEAMNRAIEAHR 302

Query: 247 IKTLIDSKHLLSKAEDAWAKGADGHATGKIILE 279
           I+ +ID      +A++A+     G   GK+++ 
Sbjct: 303 IRPVIDRVFPFEEAKEAYRYLESGSHFGKVVIR 335

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  105 bits (265), Expect = 1e-26
 Identities = 86/327 (26%), Positives = 122/327 (37%), Gaps = 54/327 (16%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
               +P P   EV ++VEA  LN  D   ++G+     P K P++P  + AG +  VG  
Sbjct: 17  EKEALPEPSSGEVRVRVEACGLNFADLMARQGLY-DSAP-KPPFVPGFECAGTVEAVGEG 74

Query: 62  VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT 121
           VK+FK G  V+ +      GG AE   V        P  +S  E A  P+  LTA  AL 
Sbjct: 75  VKDFKVGDRVMGLTRF---GGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALF 131

Query: 122 -------------QSAG------LAKLGNSH----VTATCGARNIEFVKSLGADEVLDYK 158
                         SA         +L  +     V  T  A   E +K  G   V+DY+
Sbjct: 132 ELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNVTVVGTASASKHEALKENGVTHVIDYR 191

Query: 159 TPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVI-----DLT--PTPSAMLT 210
           T D    +K  S    D V+    G         L   G+++     +L      S    
Sbjct: 192 TQDYVEEVKKISPEGVDIVLDALGGEDTRKSYDLLKPMGRLVVYGAANLVTGEKRS-WFK 250

Query: 211 FAWQKLTFSKKQLVPLLVIPK---GENLVFLV--------------KLLKEGKIKTLIDS 253
            A +     K   + L+   K   G NL +L               KL +EGKIK  IDS
Sbjct: 251 LAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIKPKIDS 310

Query: 254 KHLLSKAEDAWAKGADGHATGKIILEP 280
                +  +A  +       GK++L P
Sbjct: 311 VFPFEEVGEAMRRLQSRKNIGKVVLTP 337

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score =  103 bits (258), Expect = 1e-25
 Identities = 89/326 (27%), Positives = 131/326 (40%), Gaps = 52/326 (15%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           +P P P  DEVL++V+A++LN  D  +++G+  P +    P+I  +D AG +  VG  V 
Sbjct: 20  LPEPEPGPDEVLVRVKAAALNHLDLWVRRGM--PGIKLPLPHILGSDGAGVVEAVGPGVT 77

Query: 64  NFKAGYNVV------------------------AILNHFSGGGLAEFAMVKESLTASRPL 99
           N K G  VV                         IL     GG AE+  V        P 
Sbjct: 78  NVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPD 137

Query: 100 EVSAAEGAGLPLAGLTALEALTQSAGL----------------------AKLGNSHVTAT 137
            +S  E A  PL  LTA   L   A L                      AKL  + V AT
Sbjct: 138 NLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIAT 197

Query: 138 CG-ARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAE 194
            G    +E  K LGAD V+DY+  D      +    R  D V+       W     +LA 
Sbjct: 198 AGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHVGAATWEKSLKSLAR 257

Query: 195 NGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSK 254
            G+++    T         + + + +  ++   +  K E L   ++L+  GK+K +IDS 
Sbjct: 258 GGRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMGTKAE-LDEALRLVFRGKLKPVIDSV 316

Query: 255 HLLSKAEDAWAKGADGHATGKIILEP 280
             L +A +A  +       GKI+L P
Sbjct: 317 FPLEEAAEAHRRLESREQFGKIVLTP 342

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score =  102 bits (256), Expect = 2e-25
 Identities = 93/324 (28%), Positives = 133/324 (41%), Gaps = 71/324 (21%)

Query: 5   PVPTPRKDEVLLKVEASSLNAFDWKIKKGV--ARPILPRKFPYIPATDVAGEIIEVGSEV 62
           P P     EV ++VEA+ +N  D  + +G    +P LP    ++P ++VAG +  VG  V
Sbjct: 22  PEPGA-PGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLP----FVPGSEVAGVVEAVGEGV 76

Query: 63  KNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQ 122
             FK G  VVA+      GG AE  +V  +     P  +S  E A LP+   TA  AL +
Sbjct: 77  TGFKVGDRVVALTGQ---GGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVR 133

Query: 123 SAGL----------------------AKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKT 159
            A L                      AK   + V A       +   ++LGAD V+DY+ 
Sbjct: 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRD 193

Query: 160 PD-GAALKSPSGRK-----YDAVIHCARGIPWSTFEPNL---AENGK--VIDLT----PT 204
           PD    +K+ +G +     YD V     G     FE +L   A  G+  VI       P 
Sbjct: 194 PDLRERVKALTGGRGVDVVYDPV-----GGD--VFEASLRSLAWGGRLLVIGFASGEIPQ 246

Query: 205 PSAMLT---------FAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKH 255
             A L            W      + +L+         NL  L  LL EGKI+  + +  
Sbjct: 247 IPANLLLLKNISVVGVYWGAYARREPELL-------RANLAELFDLLAEGKIRPHVSAVF 299

Query: 256 LLSKAEDAWAKGADGHATGKIILE 279
            L +A +A    AD  ATGK++L 
Sbjct: 300 PLEQAAEALRALADRKATGKVVLT 323

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 99.5 bits (249), Expect = 3e-24
 Identities = 96/333 (28%), Positives = 141/333 (42%), Gaps = 76/333 (22%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVAR-PILPRKFPYIPATDVAGEIIEVGSEV 62
           +P P P   ++L++VEA S+N  D K++ G A  P  P+    I   D +G +  VGSEV
Sbjct: 23  LPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPK----ILGWDASGVVEAVGSEV 78

Query: 63  KNFKAGYNVVAILNHFSG-----GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTAL 117
             FK G  V     +++G     G  AE+ +V E +   +P  +S AE A LPL  LTA 
Sbjct: 79  TLFKVGDEV-----YYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAW 133

Query: 118 EALTQS-------------------AG--------LAK-LGNSHVTATCGARN--IEFVK 147
           EAL                      AG        LAK L    V AT  +R   I +VK
Sbjct: 134 EALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLTVIAT-ASRPESIAWVK 192

Query: 148 SLGADEVLDYKTPDGAALKSPSGRKYDAVIHCAR-GIPWSTFEPNLAENGKV-------- 198
            LGAD V+++       L++      D +         W      +A  G +        
Sbjct: 193 ELGADHVINHHQDLAEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQE 252

Query: 199 -IDLTPTPSAMLTFAWQKLTFSKKQLVPLL----VIPKGENLVFLVKLLKEGKIKT---- 249
            +DL P  S   +F W+   F++     +     +I + E L  +  LL  GK+KT    
Sbjct: 253 PLDLGPLKSKSASFHWE-FMFTR----SMFQTPDMIEQHEILNEVADLLDAGKLKTTLTE 307

Query: 250 ---LIDSKHLLSKAEDAWAKGADGHATGKIILE 279
               I++++L     +A A    G   GKI+LE
Sbjct: 308 TLGPINAENLR----EAHALLESGKTIGKIVLE 336

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 98.9 bits (247), Expect = 4e-24
 Identities = 86/315 (27%), Positives = 121/315 (38%), Gaps = 45/315 (14%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
           V VP+P P+  EVL++V A+ +N  D   + G   P  P     I   +VAGE++ VG  
Sbjct: 18  VEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPP--PPGASDILGLEVAGEVVAVGEG 75

Query: 62  VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT 121
           V  +K G  V A++    GGG AE+  V        P  +S  E A LP    T    L 
Sbjct: 76  VSRWKVGDRVCALVA---GGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLF 132

Query: 122 QSAGL----------------------AKLGNSHVTATCG-ARNIEFVKSLGADEVLDYK 158
           Q  GL                      AK   + V  T G        ++LGAD  ++Y+
Sbjct: 133 QRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACEALGADIAINYR 192

Query: 159 TPDGAA--LKSPSGRKYDAVIHCARGIPWSTFEPN---LAENGK--VIDLTPTPSAMLTF 211
             D          G+  D ++    G   S    N   LA +G+   I       A L  
Sbjct: 193 EEDFVEVVKAETGGKGVDVILDIVGG---SYLNRNIKALALDGRIVQIGFQGGRKAELDL 249

Query: 212 A---WQKLTFSKKQLVPLLVIPKGENLVFLVK----LLKEGKIKTLIDSKHLLSKAEDAW 264
                ++LT +   L    V  K      L +    LL  G+++ +ID    L  A  A 
Sbjct: 250 GPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVRPVIDKVFPLEDAAQAH 309

Query: 265 AKGADGHATGKIILE 279
           A    G   GKI+L 
Sbjct: 310 ALMESGDHIGKIVLT 324

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 98.0 bits (245), Expect = 1e-23
 Identities = 83/328 (25%), Positives = 117/328 (35%), Gaps = 62/328 (18%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           VPVP P   EVL+KVEA  +   D  + KG        K P IP  ++ G ++EVG  V 
Sbjct: 21  VPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVP---KLPLIPGHEIVGTVVEVGEGVT 77

Query: 64  NFKAGYNV-VAILNH--------------------FSG----GGLAEFAMVKESLTASRP 98
             K G  V V  L                       +G    GG AE+ +V        P
Sbjct: 78  GLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIP 137

Query: 99  LEVSAAEGAGLPLAGLTALEALTQS----------AGLAKLGNS----------HVTA-T 137
             +  AE A L  AG+T   AL ++           G   LG+            V A T
Sbjct: 138 EGLDLAEAAPLLCAGITTYRALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAIT 197

Query: 138 CGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENG 196
                +E  K LGAD V++    D   A+K       DA+I              L   G
Sbjct: 198 RSEEKLELAKKLGADHVINSSDSDALEAVK----EIADAIIDTVGPATLEPSLKALRRGG 253

Query: 197 KVIDLT--PTPSAMLTFAWQKLTFSKKQLVPLLV--IPKGENLVFLVKLLKEGKIKTLID 252
            ++ L   P    +       L   +  +V  LV      E  +       EGKIK  I 
Sbjct: 254 TLV-LVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEAL---DFAAEGKIKPEIL 309

Query: 253 SKHLLSKAEDAWAKGADGHATGKIILEP 280
               L +  +A+ +   G   G+ +++ 
Sbjct: 310 ETIPLDEINEAYERMEKGKVRGRAVIDM 337

Length = 339

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 88.0 bits (219), Expect = 4e-20
 Identities = 80/313 (25%), Positives = 120/313 (38%), Gaps = 36/313 (11%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
             +PVP P   EVL++VEA  LN  D   ++G    I P   P     + AG +  VG+ 
Sbjct: 18  EELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAY--IEPPPLPARLGYEAAGVVEAVGAG 75

Query: 62  VKNFKAGYNVVAILNHFS--GGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEA 119
           V  F  G  V  I        G  AE+A+V  +     P  +S  E A L +  LTA  A
Sbjct: 76  VTGFAVGDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGA 135

Query: 120 LTQSAGL----------------------AKLGNSHVTATC-GARNIEFVKSLGADEVLD 156
           L + AGL                      A    + V AT   +   + + +LGA  V+ 
Sbjct: 136 LVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLALGAAHVIV 195

Query: 157 YKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVI-----DLTPTPSAML 209
               D     L+   G+  D V     G  ++     LA  G ++        PTP  + 
Sbjct: 196 TDEEDLVAEVLRITGGKGVDVVFDPVGGPQFAKLADALAPGGTLVVYGALSGEPTPFPLK 255

Query: 210 TFAWQKLTFSKKQLVPLLVIPKGEN--LVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKG 267
               + LTF    L  + + P+     + F++  L  G +K ++D         +A    
Sbjct: 256 AALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLASGALKPVVDRVFPFDDIVEAHRYL 315

Query: 268 ADGHATGKIILEP 280
             G   GKI++ P
Sbjct: 316 ESGQQIGKIVVTP 328

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 87.3 bits (217), Expect = 6e-20
 Identities = 87/321 (27%), Positives = 132/321 (41%), Gaps = 58/321 (18%)

Query: 6   VPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNF 65
           +P P   EV++KVEAS ++  D ++++G+  P  P   P+ P  D+ G +  +GS V  F
Sbjct: 22  LPEPAAGEVVVKVEASGVSFADVQMRRGL-YPDQP-PLPFTPGYDLVGRVDALGSGVTGF 79

Query: 66  KAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA- 124
           + G  V A+      GG AE+  +        P  V AAE   L L  +TA + L ++A 
Sbjct: 80  EVGDRVAALT---RVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAK 136

Query: 125 ----------------G-----LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPD-G 162
                           G     LA L  + V  T   RN   ++ LGA   +DY+T D  
Sbjct: 137 VLTGQRVLIHGASGGVGQALLELALLAGAEVYGTASERNHAALRELGA-TPIDYRTKDWL 195

Query: 163 AALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVI-------------DLTPTPSAML 209
            A+ +P G   D V     G  +      LA  G ++              L    S + 
Sbjct: 196 PAMLTPGGV--DVVFDGVGGESYEESYAALAPGGTLVCYGGNSSLLQGRRSLAALGSLLA 253

Query: 210 TFAWQKLTFSKKQLVPLLVI------PKG--ENLVFLVKLLKEGKIKTLIDSKHLLSKAE 261
             A  KL  + ++     V       PK   ++L  L+ LL +GKI+  I  +  LS+  
Sbjct: 254 RLAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIRPKIAKRLPLSEVA 313

Query: 262 DA---WAKGADGHATGKIILE 279
           +A      G      GKI+L 
Sbjct: 314 EAHRLLESGK---VVGKIVLL 331

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score = 83.5 bits (207), Expect = 2e-18
 Identities = 80/330 (24%), Positives = 133/330 (40%), Gaps = 67/330 (20%)

Query: 11  KDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPAT---DVAGEIIEVGSEVKN-FK 66
            +E+++KV A++LN  D K+                      D +G I++VGS V + +K
Sbjct: 28  DNEIVVKVHAAALNPVDLKLYNSYTFHFK-----VKEKGLGRDYSGVIVKVGSNVASEWK 82

Query: 67  AGYNVVAILNHFSG--GGLAEFAMV-----KESLTASRPLEVSAAEGAGLPLAGLTALEA 119
            G  V  I  H  G  G L+++ +V     K+S+T  +P  +S  E A  PL   TA + 
Sbjct: 83  VGDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITR-KPENISLEEAAAWPLVLGTAYQI 141

Query: 120 L------------------TQSAG-----LAK--LGNSHVTATCGARNIEFVKSLGADEV 154
           L                  + S G     LAK       V  TC +R+ E  K LGAD  
Sbjct: 142 LEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSSRSAELNKKLGADHF 201

Query: 155 LDYKTPDGAALKSP------SGRKYDAVIHCARG---IPWST-FEPNLAENGKVI----D 200
           +DY    G  L  P         K+D ++ C  G    P         ++NG  +    D
Sbjct: 202 IDYDAHSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIVGD 261

Query: 201 LTPTPSAMLTFAWQKLTFSKKQL---VPL--------LVIPKGENLVFLVKLLKEGKIKT 249
                      +W   + + ++L   + L        L+ P  + +    +L+ +GK+K 
Sbjct: 262 YKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFLLDPNADWIEKCAELIADGKVKP 321

Query: 250 LIDSKHLLSKAEDAWAKGADGHATGKIILE 279
            IDS +     ++A+ +     A GK++++
Sbjct: 322 PIDSVYPFEDYKEAFERLKSNRAKGKVVIK 351

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 83.2 bits (206), Expect = 2e-18
 Identities = 84/329 (25%), Positives = 135/329 (41%), Gaps = 77/329 (23%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIP---ATD-----VAGEI 55
            P P P++++VL+KV A+ +N  D           L R+  Y P   +++     VAG +
Sbjct: 21  SPKPAPKRNDVLIKVSAAGVNRAD----------TLQRQGKYPPPPGSSEILGLEVAGYV 70

Query: 56  IEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLT 115
            +VGS+VK FK G  V+A+L    GGG AE+A+  +      P   +  E A +P A LT
Sbjct: 71  EDVGSDVKRFKEGDRVMALL---PGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLT 127

Query: 116 ALEAL----------------------TQSAGLAKLGNSH-VTATCGARNIEFVKSLGAD 152
           A + L                      T +A LA+   +  +  T     ++F K L A 
Sbjct: 128 AWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAI 187

Query: 153 EVLDYKTPDGAA--LKSPSGRK-YDAVIHCARGIPWSTFEPNLAENGKVI-------DLT 202
            ++ Y   +G A  +K  +G K  + V+ C  G   S     LA +GK I          
Sbjct: 188 ILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGSYLSETAEVLAVDGKWIVYGFMGGAKV 247

Query: 203 PTPSAMLTFAWQ-KLTFS---------KKQLVPLL---VIPKGENLVFLVKLLKEGKIKT 249
              + +     +  + FS         K  LV      V+P           ++EG+IK 
Sbjct: 248 EKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLP----------YMEEGEIKP 297

Query: 250 LIDSKHLLSKAEDAWAKGADGHATGKIIL 278
           ++D  + L +  +A          GK++L
Sbjct: 298 IVDRTYPLEEVAEAHTFLEQNKNIGKVVL 326

Length = 334

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 94/319 (29%), Positives = 131/319 (41%), Gaps = 51/319 (15%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
           V VPVP P   EVL+K     +NA D     G   P +  K P+    +  GE++ VG  
Sbjct: 21  VDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGV--KPPFDCGFEGVGEVVAVGEG 78

Query: 62  VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL- 120
           V +FK G  V       S G  AE+ +V      + P+     E   L ++GLTA  AL 
Sbjct: 79  VTDFKVGDAVA----TMSFGAFAEYQVVPARH--AVPVPELKPEVLPLLVSGLTASIALE 132

Query: 121 -------------TQSAG--------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYK 158
                        T +AG        LAKL   HV  TC +    EF+KSLG D  ++YK
Sbjct: 133 EVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKSLGCDRPINYK 192

Query: 159 TPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVI----------DLTPTPSA 207
           T D G  LK    +  D V     G  + T   NLA  G++I             P+P  
Sbjct: 193 TEDLGEVLKKEYPKGVDVVYESVGGEMFDTCVDNLALKGRLIVIGFISGYQSGTGPSPVK 252

Query: 208 MLTFAWQKLTFSKKQLVPLLVIPK-----GENLVFLVKLLKEGKIKTLIDSKHL--LSKA 260
             T   + L  +K   V    +P       ++L  L++L + GK+   +D      L   
Sbjct: 253 GATLPPKLL--AKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESV 310

Query: 261 EDAWAKGADGHATGKIILE 279
            DA      G   GK+++E
Sbjct: 311 ADAVDYLYSGKNIGKVVVE 329

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 80.7 bits (200), Expect = 1e-17
 Identities = 86/339 (25%), Positives = 125/339 (36%), Gaps = 78/339 (23%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           VPVP P   +VL++V  + +   D  +  GV   ILP K P+    + AG + EVGS V 
Sbjct: 18  VPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVD 77

Query: 64  NFKAGYNVV--AIL-------------NH-----FSG----GGLAEFAMVKESLTASRPL 99
             K G  VV                  N+     F G    GG AE+ +V        P 
Sbjct: 78  GLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPR 137

Query: 100 EVSAAEGAGLPLAGLTALEALTQSA---------------GLAKLGNSHVTATCGARNI- 143
            +   E A L  AGLTA  A+ ++                GL  +    + A   A  I 
Sbjct: 138 GLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPATVIA 197

Query: 144 --------EFVKSLGADEVLDYKTPDGAA--LKSPSGRKYDAVIHCARGIPWSTFEP--- 190
                   +  + LGAD VL+  + D      +   GR  DAVI    G    T      
Sbjct: 198 VDRSEEALKLAERLGADHVLN-ASDDVVEEVRELTGGRGADAVIDFV-GSD-ETLALAAK 254

Query: 191 NLAENGKVI------DLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGEN---LVFLVKL 241
            LA+ G+ +            S ++                 ++         LV +V L
Sbjct: 255 LLAKGGRYVIVGYGGHGRLPTSDLVPTEIS------------VIGSLWGTRAELVEVVAL 302

Query: 242 LKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP 280
            + GK+K  I +K  L  A +A  +  +G  TG+ +L P
Sbjct: 303 AESGKVKVEI-TKFPLEDANEALDRLREGRVTGRAVLVP 340

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 58/228 (25%), Positives = 80/228 (35%), Gaps = 54/228 (23%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKG-----------------VARPILPRKFPYI 46
           VPVPTP   EVL++V A  +N  D   ++G                          FP I
Sbjct: 21  VPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80

Query: 47  PATDVAGEIIEVGSEVKNFKAGYNVV----------------AILNHFSGGGLAEFAMVK 90
              D+ G ++ VG  V   + G  V+                  +     GG AE+ +V 
Sbjct: 81  QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVP 140

Query: 91  ESLTASRPLEVSAAEGAGLPLAGLTALEAL-------------TQSAG--------LAKL 129
                     +S  E A  P +  TA   L             T ++G        LAK 
Sbjct: 141 AENAYPVNSPLSDVELATFPCSYSTAENMLERAGVGAGETVLVTGASGGVGSALVQLAKR 200

Query: 130 GNSHVTATCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVI 177
             + V A  GA   E V++LGAD V+    P  A  K+  G   D V 
Sbjct: 201 RGAIVIAVAGAAKEEAVRALGADTVILRDAPLLADAKALGGEPVDVVA 248

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score = 79.8 bits (197), Expect = 3e-17
 Identities = 86/331 (25%), Positives = 133/331 (40%), Gaps = 69/331 (20%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
           + +P P P   ++L++V+A S+N  D K++  +A        P I   D AG ++ VG E
Sbjct: 20  IDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPE---AGQPKILGWDAAGVVVAVGDE 76

Query: 62  VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL- 120
           V  FK G  V    +    G  AEF +V E +   +P  +S AE A LPL  +TA E L 
Sbjct: 77  VTLFKPGDEVWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLF 136

Query: 121 ------------------TQSAG---------LAKLGNSHVTATCG-ARNIEFVKSLGAD 152
                                AG           +L    V AT     + E+V  LGA 
Sbjct: 137 DRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAH 196

Query: 153 EVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPN---------LAENGK------ 197
            V+D+  P  A L+       +AV +       S    +         LA  G+      
Sbjct: 197 HVIDHSKPLKAQLEK---LGLEAVSYVF-----SLTHTDQHFKEIVELLAPQGRFALIDD 248

Query: 198 --VIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT------ 249
              +D++P     ++  W+   F++       +I +   L  + +L+  GKI+T      
Sbjct: 249 PAELDISPFKRKSISLHWE-FMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRTTLAETF 307

Query: 250 -LIDSKHLLSKAEDAWAKGADGHATGKIILE 279
             I++ +L      A A    G A GKI+LE
Sbjct: 308 GTINAANLKR----AHALIESGKARGKIVLE 334

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 78.8 bits (195), Expect = 4e-17
 Identities = 78/308 (25%), Positives = 118/308 (38%), Gaps = 56/308 (18%)

Query: 12  DEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNV 71
           DEV ++V+A+ LN  D  +  G+               + +G +  VGS V   K G  V
Sbjct: 1   DEVEVEVKAAGLNFRDVLVALGLLPGDETP-----LGLECSGIVTRVGSGVTGLKVGDRV 55

Query: 72  VAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAGLAKLGN 131
           +      + G  A    V   L    P  +S  E A LP+A LTA  AL   A L K G 
Sbjct: 56  MG----LAPGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQK-GE 110

Query: 132 S---H--------------------VTATCG-ARNIEFVKSLG--ADEVLDYKTPDGAA- 164
           S   H                    V AT G     EF++ LG   D +   +    A  
Sbjct: 111 SVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRELGGPVDHIFSSRDLSFADG 170

Query: 165 -LKSPSGRKYDAVIHCARGIP----WSTFEPNLAENGKVIDL------TPTPSAMLTFAW 213
            L++  GR  D V++   G      W      LA  G+ +++      + +   M  F  
Sbjct: 171 ILRATGGRGVDVVLNSLSGELLRASWRC----LAPFGRFVEIGKRDILSNSKLGMRPFL- 225

Query: 214 QKLTFSKKQLVPLLVIPK---GENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADG 270
           + ++FS   L  L         E L  +++LL+ G +K L  +    +   DA+     G
Sbjct: 226 RNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLKPLPPTVVPSASEIDAFRLMQSG 285

Query: 271 HATGKIIL 278
              GK++L
Sbjct: 286 KHIGKVVL 293

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 78.6 bits (195), Expect = 7e-17
 Identities = 81/316 (25%), Positives = 117/316 (37%), Gaps = 53/316 (16%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           VPVP P   EVL++  A  +N  D   + G+     P   P++   + AG +  VG  V 
Sbjct: 19  VPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLY----PLPLPFVLGVEGAGVVEAVGPGVT 74

Query: 64  NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS 123
            FK G  V         G  AE+ +V  S     P  +S    A L L GLTA   L ++
Sbjct: 75  GFKVGDRVAY---AGPPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRET 131

Query: 124 --------------AG--------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTP 160
                         AG         AK   + V  T       E  ++ GAD V++Y+  
Sbjct: 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDE 191

Query: 161 DGAA--LKSPSGRKYDAVIHCARGIPWSTFEPNL---AENGKVIDLTPTPSAMLTFAWQK 215
           D      +   GR  D V     G+   TFE +L      G ++        +  F   +
Sbjct: 192 DFVERVREITGGRGVDVVYD---GVGKDTFEGSLDSLRPRGTLVSFGNASGPVPPFDLLR 248

Query: 216 LTFSKKQLVPLLVIPKGENLVF-----------LVKLLKEGKIKTLIDSKHLLSKAEDAW 264
           L  SK  L   L  P   + +            L   +  GK+K  I  ++ L+ A  A 
Sbjct: 249 L--SKGSLF--LTRPSLFHYIATREELLARAAELFDAVASGKLKVEIGKRYPLADAAQAH 304

Query: 265 AKGADGHATGKIILEP 280
                   TGK++L P
Sbjct: 305 RDLESRKTTGKLLLIP 320

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 77.1 bits (190), Expect = 2e-16
 Identities = 76/305 (24%), Positives = 126/305 (41%), Gaps = 35/305 (11%)

Query: 6   VPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNF 65
           V  P   EV ++V A SLN  D    +G+  P +P  +P+ P  + +G +  VG  V   
Sbjct: 2   VAPPGPGEVRIQVRAFSLNFGDLLCVRGL-YPTMP-PYPFTPGFEASGVVRAVGPHVTRL 59

Query: 66  KAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEA------ 119
             G  V+A     S GG A    V E     +P  +S  E   LP+  LT ++A      
Sbjct: 60  AVGDEVIAGTGE-SMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAFARAGL 118

Query: 120 ------LTQSAG---------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPDGA 163
                 L Q+A          LA+L  + + AT      +E++K LG   V++Y   D  
Sbjct: 119 AKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLKQLGVPHVINYVEEDFE 178

Query: 164 A--LKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPT-----PSAMLTFAWQKL 216
              ++   GR  D VI+   G         LA  G+ +++  T     PS  L+      
Sbjct: 179 EEIMRLTGGRGVDVVINTLSGEAIQKGLNCLAPGGRYVEIAMTALKSAPSVDLSVLSNNQ 238

Query: 217 TFSKKQLVPLLVIPK---GENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHAT 273
           +F    L  LL++      +    +V L++EG+++  +          +A+   +D    
Sbjct: 239 SFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELRPTVSRIFPFDDIGEAYRYLSDRENI 298

Query: 274 GKIIL 278
           GK+++
Sbjct: 299 GKVVV 303

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 76.6 bits (189), Expect = 4e-16
 Identities = 91/339 (26%), Positives = 129/339 (38%), Gaps = 89/339 (26%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPR-KFPYIPATDVAGEIIEVGSEV 62
           VP P P   EVL+KV+A+ +   D    KG      PR K+P I   ++ G + EVG  V
Sbjct: 18  VPDPEPGPGEVLIKVKAAGVCYRDLLFWKGF----FPRGKYPLILGHEIVGTVEEVGEGV 73

Query: 63  KNFKAGYNVVAILNHFSG------------------------GGLAEFAMVKESLTASRP 98
           + FK G  V+       G                        GG AE+  V E      P
Sbjct: 74  ERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLP 133

Query: 99  LEVSAAEGA-----------GLPLAGLTALEA--LTQSAG--------LAK-LGNSHVTA 136
             VS    A            L  AG+   +   +T + G        LAK LG   +  
Sbjct: 134 DNVSDESAALAACVVGTAVHALKRAGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAV 193

Query: 137 TCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPN---LA 193
           T     ++ +K LGAD V+D        +K   G   D VI    G P  T E +   L 
Sbjct: 194 TRSPEKLKILKELGADYVIDGSKF-SEDVKKLGG--ADVVIELV-GSP--TIEESLRSLN 247

Query: 194 ENGKVI---DLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKG-----------ENLVFLV 239
           + G+++   ++TP P+                L P L+I K             ++   +
Sbjct: 248 KGGRLVLIGNVTPDPA---------------PLRPGLLILKEIRIIGSISATKADVEEAL 292

Query: 240 KLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL 278
           KL+KEGKIK +ID    L    +A      G   G+I+L
Sbjct: 293 KLVKEGKIKPVIDRVVSLEDINEALEDLKSGKVVGRIVL 331

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|222256 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase

 Score = 72.0 bits (177), Expect = 6e-16
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 149 LGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDL-TPTPSA 207
           LGADEV+DY T D     +  G   D V+    G         L   G+++ +  P    
Sbjct: 1   LGADEVIDYTTEDFEEATAGEG--VDVVLDTVGGETLLRALLALKPGGRLVSIGGPDLLL 58

Query: 208 MLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKG 267
            +             L P+     G +L  L +L++ GK++ +ID    L +A +A    
Sbjct: 59  SVAAKAGGRGVRGVFLFPVSPGEAGADLAELAELVEAGKLRPVIDRVFPLEEAAEAHRYL 118

Query: 268 ADGHATGKIIL 278
             G A GK++L
Sbjct: 119 ESGRARGKVVL 129

Length = 129

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 73.5 bits (181), Expect = 5e-15
 Identities = 66/243 (27%), Positives = 93/243 (38%), Gaps = 58/243 (23%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGV-ARPILPRKFPYIPATDVAGEIIEVGSEV 62
           V  P P   EVL++V+ + +N  D+ +   V  +P+     P+IP  + AG + EVG  V
Sbjct: 19  VKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVKPM-----PHIPGAEFAGVVEEVGDHV 73

Query: 63  KNFKAGYNVVAILNHFSG------------------------GGLAEFAMVKESLTASRP 98
           K  K G  VV     F G                        GG AE+ +V E      P
Sbjct: 74  KGVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIP 133

Query: 99  LEVSAAEGAGLPLAGLTALEAL---TQSAG------------------LAKLGNSHVTAT 137
             +S    A LP+A LTA  AL       G                  LAK+  + V A 
Sbjct: 134 DSISDELAASLPVAALTAYHALKTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAV 193

Query: 138 CGARNIEFVKSLGADEVLDYKTPDGAALKS-PSGRKYDAVIHCARGIPWSTFEPNLAENG 196
                 +++K  GADEV+DY   D    K     +  D VI+      W      L   G
Sbjct: 194 SRK---DWLKEFGADEVVDY---DEVEEKVKEITKMADVVINSLGSSFWDLSLSVLGRGG 247

Query: 197 KVI 199
           +++
Sbjct: 248 RLV 250

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 71/314 (22%), Positives = 116/314 (36%), Gaps = 41/314 (13%)

Query: 1   HVHVPVPTPRKDEVLLKVEASSLNAFD-WKIKKGVARPILPRKFPYIPATDVAGEIIEVG 59
            V +P+P P   EVL+++ A+ +N  D   I    A    P   P +P  +  G ++EVG
Sbjct: 16  LVSLPIPPPGPGEVLVRMLAAPINPSDLITISG--AYGSRPPL-PAVPGNEGVGVVVEVG 72

Query: 60  SEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTAL-- 117
           S V     G  V+ +      G   E+ +         P  +S  + A L +  LTA   
Sbjct: 73  SGVSGLLVGQRVLPLG---GEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLM 129

Query: 118 ----------EALTQSAG-------LAKLGNSH-VTATCGARN---IEFVKSLGADEVLD 156
                     + + Q+A        L +L            R    +E +K+LGADEV+D
Sbjct: 130 LTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKALGADEVID 189

Query: 157 YKTPD-GAALKS-PSGRKYDAVIHCARGIPWSTFEPNLAENGKVI-----DLTPTPSAML 209
               D    +K    G      +    G   +    +L   G ++        P P    
Sbjct: 190 SSPEDLAQRVKEATGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLLSGEPVPFPRS 249

Query: 210 TFAWQKLTFSKKQLVPLLVIPKGENLVF----LVKLLKEGKIKTLIDSKHLLSKAEDAWA 265
            F ++ +T     L   L     E        ++KL++ G + T + +K  L   E+A A
Sbjct: 250 VFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLEDFEEAVA 309

Query: 266 KGADGHATGKIILE 279
                   GK++L 
Sbjct: 310 AAEQPGRGGKVLLT 323

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 70.2 bits (173), Expect = 8e-14
 Identities = 71/240 (29%), Positives = 90/240 (37%), Gaps = 53/240 (22%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           VPVP P  DEVL+KV A  +   D  I +G          P +P  + AG ++ VGS+V 
Sbjct: 17  VPVPEPGPDEVLIKVAACGICGTDLHIYEG--EFGA--APPLVPGHEFAGVVVAVGSKVT 72

Query: 64  NFKAGYNVVAILN------------------HFSG------GGLAEFAMVKESLTASRPL 99
            FK G  V    N                  + +       GG AE+ +V        P 
Sbjct: 73  GFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPD 132

Query: 100 EVSAAEGA----------GLPLAGLT-ALEALTQSAG--------LAKL-GNSHVT-ATC 138
            +S  E A          GL L G+      L   AG        L KL G S VT A  
Sbjct: 133 NLSFEEAALAEPLSCAVHGLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEP 192

Query: 139 GARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFE--PNLAENG 196
               +E  K LGA E +D    D  A K  +   +D VI    G+P  T E     A  G
Sbjct: 193 NEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEAT-GVP-KTLEQAIEYARRG 250

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 78/340 (22%), Positives = 121/340 (35%), Gaps = 83/340 (24%)

Query: 4   VPVPTPRKDEVLLKVEA-----SSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEV 58
           VPVP P   EVL+KV+A     S L+  D              K P     ++AG ++EV
Sbjct: 19  VPVPEPGPGEVLVKVKAAGVCHSDLHILD-------GGVPTLTKLPLTLGHEIAGTVVEV 71

Query: 59  GSEVKNFKAGYNVVAILNHFSG------------------------GGLAEFAMVKESLT 94
           G+ V NFK G  V        G                        GG AE+ +V     
Sbjct: 72  GAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARAL 131

Query: 95  ASRPLEVSAAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNSH 133
              P  V  A+ A    A LT   A+ ++                       +AK   + 
Sbjct: 132 VPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAA 191

Query: 134 VTAT-CGARNIEFVKSLGADEVLDYKTPDGAALKSPS-GRKYDAVIHCARGIPWSTFEPN 191
           V A       +E  K LGADEVL+         K+   G  +D +     G    TFE  
Sbjct: 192 VIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV-GTQ-PTFE-- 247

Query: 192 LAEN-----GKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKG------ENLVFLVK 240
            A+      G++         ++     KLT     L+   +   G      E+L  ++ 
Sbjct: 248 DAQKAVKPGGRI--------VVVGLGRDKLTVDLSDLIARELRIIGSFGGTPEDLPEVLD 299

Query: 241 LLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP 280
           L+ +GK+   +++   L +  +   +   G   G+++L P
Sbjct: 300 LIAKGKLDPQVET-RPLDEIPEVLERLHKGKVKGRVVLVP 338

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 67.4 bits (166), Expect = 5e-13
 Identities = 71/311 (22%), Positives = 110/311 (35%), Gaps = 74/311 (23%)

Query: 17  KVEASSLNAFDWKIKKGV--ARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI 74
           +V A+ LN  D      V  A  + P     +   + AG +  VG  V     G  V+  
Sbjct: 2   EVRAAGLNFRD------VLIALGLYPG--EAVLGGECAGVVTRVGPGVTGLAVGDRVMG- 52

Query: 75  LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAGL-------- 126
               + G  A   +    L    P   S  E A +P+  LTA  AL   A L        
Sbjct: 53  ---LAPGAFATRVVTDARLVVPIPDGWSFEEAATVPVVFLTAYYALVDLARLRPGESVLI 109

Query: 127 --------------AKLGNSHVTATCGARN-IEFVKSLG--ADEVLDYKTPDGAA----- 164
                         A+   + V AT G+    +F+++LG   D +   +    A      
Sbjct: 110 HAAAGGVGQAAIQLARHLGAEVFATAGSPEKRDFLRALGIPDDHIFSSRDLSFADEILRA 169

Query: 165 ---------LKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDL------TPTPSAML 209
                    L S SG   DA + C            LA  G+ +++        +  AM 
Sbjct: 170 TGGRGVDVVLNSLSGEFLDASLRC------------LAPGGRFVEIGKRDIRDNSQLAMA 217

Query: 210 TFAWQKLTFSKKQLVPLLVIPK--GENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKG 267
            F    +++    L  L   P    E L  +++L  EG ++ L  +   +S AEDA+   
Sbjct: 218 PFR-PNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPLPVTVFPISDAEDAFRYM 276

Query: 268 ADGHATGKIIL 278
             G   GK++L
Sbjct: 277 QQGKHIGKVVL 287

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 67.4 bits (165), Expect = 6e-13
 Identities = 54/183 (29%), Positives = 75/183 (40%), Gaps = 23/183 (12%)

Query: 1   HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGS 60
              VP P P   +V + V A+ ++  D +++ G      P + PY+P  +VAG +  VG 
Sbjct: 17  PEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGP 76

Query: 61  EVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
            V     G  VVA     +GGG AE A+         P  +       +   G TAL  L
Sbjct: 77  GVDPAWLGRRVVAHTG-RAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGLL 135

Query: 121 -------------TQSAG--------LAK-LGNSHVTATCGARNIEFVKSLGADEVLDYK 158
                        T +AG        LAK  G + V A  G      V++LGAD  +DY 
Sbjct: 136 DLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRALGADVAVDYT 195

Query: 159 TPD 161
            PD
Sbjct: 196 RPD 198

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 67.6 bits (166), Expect = 6e-13
 Identities = 59/228 (25%), Positives = 76/228 (33%), Gaps = 70/228 (30%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPIL--------PRKFPYIPATDVAG 53
             VPVP P   EVL+KVEA            GV R  L        P K P IP  ++ G
Sbjct: 20  TEVPVPEPGPGEVLIKVEAC-----------GVCRTDLHIVEGDLPPPKLPLIPGHEIVG 68

Query: 54  EIIEVGSEVKNFKAGYNV-VAILNH--------------------FSG----GGLAEFAM 88
            +  VG  V  F  G  V V  L                      F+G    GG AE+ +
Sbjct: 69  RVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMV 128

Query: 89  VKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS--------------------AGLAK 128
             E      P +    E A L  AG+    AL  +                      +A+
Sbjct: 129 ADERFAYPIPEDYDDEEAAPLLCAGIIGYRALKLAGLKPGQRLGLYGFGASAHLALQIAR 188

Query: 129 LGNSHVTA-TCGARNIEFVKSLGADEVLDYKTP-----DGAALKSPSG 170
              + V A T    + E  + LGAD   D         D A + +P G
Sbjct: 189 YQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVG 236

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 67.3 bits (165), Expect = 8e-13
 Identities = 60/219 (27%), Positives = 81/219 (36%), Gaps = 52/219 (23%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
           V   VP P   EVL+KVEA  +   D  +K+G    +    +P +P  +V G I  VG  
Sbjct: 16  VERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGL---SYPRVPGHEVVGRIDAVGEG 72

Query: 62  VKNFKAGYNV--------------------VAILN------HFSGGGLAEFAMVKESLTA 95
           V  +K G  V                    V   N          GG AE+ +      A
Sbjct: 73  VSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRD-GGYAEYMLAPAEALA 131

Query: 96  SRPLEVSAAEGAGLPLAGLTALEALTQSA-------------GL--------AKLGNSHV 134
             P ++ AAE A L  AG+T   AL  S              GL        AK+G   V
Sbjct: 132 RIPDDLDAAEAAPLLCAGVTTFNALRNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTV 191

Query: 135 TATCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRK 172
             + G+   +  + LGA   +D    D   AL+   G K
Sbjct: 192 AISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAK 230

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 65.6 bits (161), Expect = 3e-12
 Identities = 61/227 (26%), Positives = 84/227 (37%), Gaps = 53/227 (23%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           VPVP P   EVL+K+EAS +   D     G   P+ P K P I   + AG ++ VG  V 
Sbjct: 19  VPVPEPGPGEVLVKLEASGVCHTDLHAALGDW-PVKP-KLPLIGGHEGAGVVVAVGPGVS 76

Query: 64  NFKAGYNVVAILNHFS--------------------------GGGLAEFAMVKESLTASR 97
             K G + V +   +                            G  AE+A+         
Sbjct: 77  GLKVG-DRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPI 135

Query: 98  PLEVSAAEGAGLPLAGLTALEALTQSA--------------GL-------AKLGNSHVTA 136
           P  +S  + A L  AG+T  +AL ++               GL       AK     V A
Sbjct: 136 PDGLSFEQAAPLLCAGVTVYKALKKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIA 195

Query: 137 T-CGARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCA 180
              G   +E  K LGAD  +D+K  D   A  +   G    AV+  A
Sbjct: 196 IDVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVTA 242

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 54/177 (30%), Positives = 75/177 (42%), Gaps = 37/177 (20%)

Query: 11  KDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYN 70
           + +VL+KV  SSLN  D     G    +  R +P IP  D AG ++   SE   F+ G  
Sbjct: 26  EGDVLIKVAYSSLNYKDALAITGKGGVV--RSYPMIPGIDAAGTVVS--SEDPRFREGDE 81

Query: 71  VVAI-----LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTA------LEA 119
           V+       ++H   GG +++A V        P  +S  E   L  AG TA      LE 
Sbjct: 82  VIVTGYGLGVSHD--GGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALER 139

Query: 120 --LTQSAG------------------LAKLGNSHVTATCGARNIEFVKSLGADEVLD 156
             LT   G                  L+KLG   V +T  A   +++K LGA EV+D
Sbjct: 140 NGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLKELGASEVID 196

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323

>gnl|CDD|176248 cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases

 Score = 64.5 bits (158), Expect = 6e-12
 Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 49/181 (27%)

Query: 13  EVLLKVEASSLNAFDWKIKKGVA---RPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGY 69
           +V ++V  S+LN      K G+A   +  + R FP +P  D+AG ++E  S    FK G 
Sbjct: 29  DVTVEVHYSTLN-----YKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFKPGD 81

Query: 70  NVVAILN-------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTAL---EA 119
            V  +L        H+  GG A+ A VK       P  +SA +   +  AG TA+    A
Sbjct: 82  RV--VLTGWGVGERHW--GGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMA 137

Query: 120 L--------------TQSAG---------LAKLGNSHVTATCG-ARNIEFVKSLGADEVL 155
           L              T +AG         LA+LG   V A+ G     ++++SLGA E++
Sbjct: 138 LEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASEII 196

Query: 156 D 156
           D
Sbjct: 197 D 197

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 324

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 63/231 (27%), Positives = 80/231 (34%), Gaps = 59/231 (25%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           VPVP P   EVL+KV A  +   D K  +G    +   K P I   ++AGEI+EVG  V 
Sbjct: 17  VPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDL---KPPRILGHEIAGEIVEVGDGVT 73

Query: 64  NFKAGYNVVA------------------------ILNHFSGGGLAEFAMVKESLTASR-- 97
            FK G  V                             +   GG AE+  V          
Sbjct: 74  GFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGV 133

Query: 98  ---PLEVSAAEGAGL-PLAGLTALEALTQSA----------GLAKLGNSHV--TATCGAR 141
              P  VS  E A + PLA    + A  ++           G   +G  H       GAR
Sbjct: 134 LKLPDNVSFEEAALVEPLA--CCINAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGAR 191

Query: 142 NI----------EFVKSLGADEVLDYKTPDGAA--LKSPSGRKYDAVIHCA 180
            +          EF K LGAD  +D    D      +   GR  D VI   
Sbjct: 192 KVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVAT 242

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 84/346 (24%), Positives = 123/346 (35%), Gaps = 90/346 (26%)

Query: 4   VPVPTPRKDEVLLKVEA-----SSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEV 58
           +P P P   EVL+KV+A     S +  +      G          P +   + +G + EV
Sbjct: 17  IPKPEPGPGEVLVKVKACGICGSDIPRYL---GTG------AYHPPLVLGHEFSGTVEEV 67

Query: 59  GSEVKNFKAGYNVVAI------------LNHFS------------GGGLAEFAMVKESLT 94
           GS V +   G  V                  +S             G  AE+  V     
Sbjct: 68  GSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNL 127

Query: 95  ASRPLEVSAAEGAGL-PLAGLTALEALTQS------------AG--------LAK-LGNS 132
              P  V   E A + P A   AL A+  +            AG          K LG  
Sbjct: 128 IKIPDHVDYEEAAMIEPAA--VALHAVRLAGITLGDTVVVIGAGTIGLLAIQWLKILGAK 185

Query: 133 HVTATC-GARNIEFVKSLGADEVLDYKTPDGAALKSP-SGRKYDAVIHCARGIPWSTFEP 190
            V A       +   + LGAD+ ++ K  D   ++    GR  D VI  A G P +T E 
Sbjct: 186 RVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAA-GSP-ATIEQ 243

Query: 191 NLA---ENGKVIDL-TPTPSAMLT-FAWQKLTFSKKQLV----------PLLVIPKGENL 235
            LA     GKV+ +  P     L+  A++K+    K+L           P      G+  
Sbjct: 244 ALALARPGGKVVLVGIPYGDVTLSEEAFEKILR--KELTIQGSWNSYSAPF----PGDEW 297

Query: 236 VFLVKLLKEGKI--KTLIDSKHLLSKAEDAWAKGADG-HATGKIIL 278
              + LL  GKI  + LI  +  L     A+ + AD    +GK++L
Sbjct: 298 RTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL 343

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 55/199 (27%), Positives = 77/199 (38%), Gaps = 49/199 (24%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           VPVP P   EVL+K+EA  +   D    +G        K+P +P  ++ GE++EVG+ V+
Sbjct: 17  VPVPEPGPGEVLIKIEACGVCHTDLHAAEGD---WGGSKYPLVPGHEIVGEVVEVGAGVE 73

Query: 64  NFKAGYNV-VAILNHFSG------------------------GGLAEFAMVKESLTASRP 98
             K G  V V  L    G                        GG AE+ +     T   P
Sbjct: 74  GRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLP 133

Query: 99  LEVSAAEGAGLPLAGLTALEALTQSA----------GLAKLGN----------SHVTA-T 137
             +  A+ A L  AG+T   AL  +           G+  LG+              A T
Sbjct: 134 DGLPLAQAAPLLCAGITVYSALRDAGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAIT 193

Query: 138 CGARNIEFVKSLGADEVLD 156
                 E  + LGADEV+D
Sbjct: 194 RSPDKRELARKLGADEVVD 212

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 83/350 (23%), Positives = 124/350 (35%), Gaps = 86/350 (24%)

Query: 2   VHVPVPTPRKDEVLLKVEASSL---------NAFDW---KIKKGVARPILPRKFPYIPAT 49
           V +  P P   EVL+KV A  +           +D    K      R +   K P +   
Sbjct: 16  VEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGV---KLPLVLGH 72

Query: 50  DVAGEIIEVGSEVKNFKAGYNVVAI------------------------LNHFSGGGLAE 85
           ++ GE++ VG +  + K G  V+                          L  F  GG AE
Sbjct: 73  EIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAE 132

Query: 86  FAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQ-------------SAG------- 125
           + +V  S     P  +  A  A L  +GLTA  A+ +              AG       
Sbjct: 133 YVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMAL 192

Query: 126 -LAK--LGNSHVTATCGARNIEFVKSLGADEVLDYKTPDGAA-LKSPSGRKYDAVIHCAR 181
            L K     + +        +E  K+ GAD V++   PD A  +   +G   DAVI    
Sbjct: 193 ALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVN 252

Query: 182 GIPWSTF-EPNLAENGKVI-------DLT-PTPSAMLTFAWQKLTFSKKQLVPLLVIPKG 232
               ++     LA+ GK++       + T P P          L      +    V   G
Sbjct: 253 NSATASLAFDILAKGGKLVLVGLFGGEATLPLPL---------LPLRALTIQGSYV---G 300

Query: 233 --ENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP 280
             E L  LV L K GK+K +  ++  LS   DA      G   G+ +L+P
Sbjct: 301 SLEELRELVALAKAGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVLKP 350

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 55/212 (25%), Positives = 80/212 (37%), Gaps = 47/212 (22%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLN---AFDWKIKKGVARPILPRKFPYIPATDVAGEIIEV 58
             +P+    + +VL++V  SSLN   A       GV R      +P+ P  D AG ++  
Sbjct: 18  RTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTR-----NYPHTPGIDAAGTVVS- 71

Query: 59  GSEVKNFKAGYNVVAI---LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLT 115
            S+   F+ G  V+     L   + GG AE+  V        P  +S  E   L  AG T
Sbjct: 72  -SDDPRFREGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFT 130

Query: 116 ALEALT--QSAG------------------------LAKLGNSHVTATCGARN-IEFVKS 148
           A  ++   +  G                        LAKLG + V A  G     +++KS
Sbjct: 131 AALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGYT-VVALTGKEEQADYLKS 189

Query: 149 LGADEVL---DYKTPDGAALKSPSGRKYDAVI 177
           LGA EVL   D        L      ++   I
Sbjct: 190 LGASEVLDREDLLDESKKPLLK---ARWAGAI 218

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 36/204 (17%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEV-GS 60
             +P+P P+   VL++V+A  LN  +   ++G +  +   KFP +   +  GE+ E  G 
Sbjct: 18  REIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSV---KFPRVLGIEAVGEVEEAPGG 74

Query: 61  EVKNFKAGYNVVAILNHFS---GGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTAL 117
               F  G  V   +        G  AE+ +V      +   ++S AE A LP    TA 
Sbjct: 75  T---FTPGQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAW 131

Query: 118 EALTQS----------------------AGLAKLGNSHVTATC-GARNIEFVKSLGADEV 154
            +L +S                        LAK   + VTAT         +K LGADEV
Sbjct: 132 GSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKELGADEV 191

Query: 155 L-DYKTPDGAALKSPSGRKYDAVI 177
           + D          +P G  +D V+
Sbjct: 192 VIDDGAIAEQLRAAPGG--FDKVL 213

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 12 DEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNV 71
           EVL++V+A+ +   D  I +G      P K P I   + AG + EVG  V   K G  V
Sbjct: 2  GEVLVRVKAAGICGSDLHIYRGE---PPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRV 58

Query: 72 VAILNHFSG 80
          V       G
Sbjct: 59 VVYPLIPCG 67

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 37/203 (18%)

Query: 11  KDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYN 70
           + +VL++V  SS+N  D        +  + +++P+IP  D+AG ++E  S    FK G  
Sbjct: 27  EGDVLIRVAYSSVNYKDGLASIPGGK--IVKRYPFIPGIDLAGTVVE--SNDPRFKPGDE 82

Query: 71  VVAI-----LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTA------LE- 118
           V+       ++H   GG +E+A V        P  ++  E   L  AG TA      LE 
Sbjct: 83  VIVTSYDLGVSHH--GGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEE 140

Query: 119 -ALTQSAG------------------LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKT 159
             LT   G                  LAKLG   V +T  A   +++K LGA EV+  + 
Sbjct: 141 NGLTPEQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREE 200

Query: 160 PDGAALKSPSGRKYDAVIHCARG 182
               ++K    +++   +    G
Sbjct: 201 LQEESIKPLEKQRWAGAVDPVGG 223

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 326

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 89/327 (27%), Positives = 135/327 (41%), Gaps = 61/327 (18%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPR-KFPYIPATDVAGEIIEVGSEV 62
           VP P P KDEV++KV  + L   D    +G      PR K+P I   +V G + EVG  V
Sbjct: 18  VPDPKPGKDEVVIKVNYAGLCYRDLLQLQG----FYPRMKYPVILGHEVVGTVEEVGENV 73

Query: 63  KNFKAGYNVVAILNHFSG------------------------GGLAEFAMVKESLTASRP 98
           K FK G  V ++L    G                        G  AE+A VK +     P
Sbjct: 74  KGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVP 133

Query: 99  LEVSAAEGAGLPLAGLTALEALTQSAGLAKLGNSHVTATCGARNI---EFVKSLGADEVL 155
             VS  EGA +       +    + AG+ K     VT   G   I   +  K+LGA  + 
Sbjct: 134 PNVS-DEGAVIVPCVTGMVYRGLRRAGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIA 192

Query: 156 DYKTPDGAALKSP------SGRKY----------DAVIHCARGIPWSTFEPNLAE---NG 196
              +   A + S        G K+          D VI    G P  T E +L      G
Sbjct: 193 VTSSESKAKIVSKYADYVIVGSKFSEEVKKIGGADIVIETV-GTP--TLEESLRSLNMGG 249

Query: 197 KVI---DLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDS 253
           K+I   ++ P+P+  L   +  +     +++  +   K  ++   +KL+ EGKIK +I +
Sbjct: 250 KIIQIGNVDPSPTYSLRLGY--IILKDIEIIGHISATK-RDVEEALKLVAEGKIKPVIGA 306

Query: 254 KHLLSKAEDAWAKGADGHATGKIILEP 280
           +  LS+ + A  +  D    GKI+++P
Sbjct: 307 EVSLSEIDKALEELKDKSRIGKILVKP 333

Length = 334

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 58.6 bits (142), Expect = 7e-10
 Identities = 51/217 (23%), Positives = 78/217 (35%), Gaps = 71/217 (32%)

Query: 4   VPVPTPRKDEVLLKVEASSLN-------------AFDWKIKKGVARPILPRKFPYIPATD 50
           VPVP     EVL+ V A+ +N              F  + ++G   P       +I  +D
Sbjct: 35  VPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPY------HIGGSD 88

Query: 51  VAGEIIEVGSEVKNFKAGYNVVAILNHFSG-------------------------GGLAE 85
            +G +  VG  VKN+K G  VV   + + G                         G  A+
Sbjct: 89  ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQ 148

Query: 86  FAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQ-----------------SAGLAK 128
           FA+V+ +    +P  +S  E A   L G TA   L                   S GL  
Sbjct: 149 FALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGS 208

Query: 129 LGNSHVTATCGARNI---------EFVKSLGADEVLD 156
           +      A  GA  +         E+ ++LGA+ V++
Sbjct: 209 MAIQLARAA-GANPVAVVSSEEKAEYCRALGAEGVIN 244

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 54/173 (31%), Positives = 72/173 (41%), Gaps = 32/173 (18%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           VP P P   E L++V A SLN       +G  +    R    +P  D AG +    ++  
Sbjct: 19  VPDPQPAPHEALVRVAAISLN-------RGELKFAAERPDGAVPGWDAAGVVERAAADGS 71

Query: 64  NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQ- 122
               G  VV +    + G  AE   V     A  P  VS A+ A LP+AG+TAL AL + 
Sbjct: 72  GPAVGARVVGLG---AMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRG 128

Query: 123 -------------SAG-------LAKLGNSHVTATCGA-RNIEFVKSLGADEV 154
                        S G       LA L  +HV A  G+    E ++ LGA EV
Sbjct: 129 GPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEV 181

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 49/210 (23%), Positives = 73/210 (34%), Gaps = 53/210 (25%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           VP P P  D V+++VEA  +   DW   +G          P++P  + AG ++EVG +V 
Sbjct: 18  VPDPEPPPDGVVVEVEACGVCRSDWHGWQG--HDPDV-TLPHVPGHEFAGVVVEVGEDVS 74

Query: 64  NFKAGYNVVAILNHFSG------------------------GGLAEFAMVKES---LTAS 96
            ++ G  V        G                        G  AE+  V  +   L   
Sbjct: 75  RWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVR- 133

Query: 97  RPLEVSAAEGAGLPLAGLTALEALTQSAGLAK-----------LGNS--HVTATCGARNI 143
            P +V     AGL     TA  AL   A +             +G S   + +  GAR I
Sbjct: 134 LPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGARVI 193

Query: 144 ---------EFVKSLGADEVLDYKTPDGAA 164
                    E  + LGA   ++    +  A
Sbjct: 194 AVDIDDDKLELARELGAVATVNASEVEDVA 223

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 76/327 (23%), Positives = 112/327 (34%), Gaps = 74/327 (22%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIE------ 57
           V VP P + +VLL+    SL+           R  +     Y P  ++ GE++       
Sbjct: 32  VDVPEPGEGQVLLRTLYLSLD--------PYMRGRMSDAPSYAPPVEL-GEVMVGGTVAK 82

Query: 58  -VGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTA---SRPLEVSAAEGA-GLPLA 112
            V S    F+ G  VV +       G  E+A+            P  +SA  G  G+P  
Sbjct: 83  VVASNHPGFQPGDIVVGVS------GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMP-- 134

Query: 113 GLTALEALTQ--------------SAG--------LAKLGNSHVTATCG-ARNIEFVKS- 148
           GLTA   L                +AG        +AKL    V    G A   +F+   
Sbjct: 135 GLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEE 194

Query: 149 LGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVI-------- 199
           LG D  +DYK  D   ALK    +  D       G       P L    ++         
Sbjct: 195 LGFDAGIDYKAEDFAQALKEACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGAISQY 254

Query: 200 ---DLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPK-----GENLVFLVKLLKEGKIKTLI 251
              +L P P  +     ++L      +   +V         E L  L   +KEGKI+   
Sbjct: 255 NAPELPPGPRRLPLLMAKRLR-----VQGFIVASDYDQRFPEALRELGGWVKEGKIQYRE 309

Query: 252 DSKHLLSKAEDAWAKGADGHATGKIIL 278
                L  A +A+     G   GK+++
Sbjct: 310 TIVDGLENAPEAFIGLLSGKNFGKLVV 336

Length = 340

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 62/254 (24%), Positives = 88/254 (34%), Gaps = 82/254 (32%)

Query: 4   VPVPTPRKDEVLLKVEA-----SSLNAFDWKIKKGVARPILP----------RKFPYIPA 48
           VP P  +  EV +KV       S L+ +       +  PI               P    
Sbjct: 17  VPEPPVKPGEVKIKVAWCGICGSDLHEY-------LDGPIFIPTEGHPHLTGETAPVTLG 69

Query: 49  TDVAGEIIEVGSEVKNFKAG---------------------YNVVAILN----HFSGGGL 83
            + +G ++EVGS V  FK G                     YN+   L        GGG 
Sbjct: 70  HEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGF 129

Query: 84  AEFAMVKESLTASRPLEVSAAEGAGL-PLA-------------------------GLTAL 117
           AE+ +V        P  V   E A + PLA                         GL  +
Sbjct: 130 AEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWHAVRRSGFKPGDTALVLGAGPIGLLTI 189

Query: 118 EALTQSAGLAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRK-YDA 175
            AL ++AG +K+  S  +    AR  E  + LGA  VLD    D  A ++  +G    D 
Sbjct: 190 LAL-KAAGASKIIVSEPSE---AR-RELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDV 244

Query: 176 VIHCARGIPWSTFE 189
              CA G+  +T +
Sbjct: 245 SFDCA-GVQ-ATLD 256

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 2  VHVPVPTPRKDEVLLKVEASSLNAFDWKIKK--GVARPILPRKFPYIPATDVAGEIIEVG 59
          V VPVP P   EVL+KV A+S+   D  I +    A+  +  K P I   + AGE++EVG
Sbjct: 16 VEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRI--KPPLIFGHEFAGEVVEVG 73

Query: 60 SEVKNFKAGYNVVA 73
            V   K G  V A
Sbjct: 74 EGVTRVKVGDYVSA 87

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 57/204 (27%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           +PVP P++ E+L++V A  +   D  + KG     LP   P++   +++GE++EVG  V+
Sbjct: 18  IPVPRPKEGEILIRVAACGVCHSDLHVLKGE----LPFPPPFVLGHEISGEVVEVGPNVE 73

Query: 64  N---FKAGYNVV----------------------------------------------AI 74
           N      G  VV                                                
Sbjct: 74  NPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGP 133

Query: 75  LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAGLAKLGNSHV 134
           +  +S GGLAE+A+V  +  A  P  +   E A L  AG TA  AL + A   + G +  
Sbjct: 134 VYMYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGAL-KHAADVRPGETVA 192

Query: 135 ---TATCGARNIEFVKSLGADEVL 155
                  G+  I+  K+ GA  ++
Sbjct: 193 VIGVGGVGSSAIQLAKAFGASPII 216

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 31/149 (20%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           VP P P   EVL+KV A+ +   D  I KG   P+   + P +   + +G I+EVG +V+
Sbjct: 19  VPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPV---ETPVVLGHEFSGTIVEVGPDVE 75

Query: 64  NFKAGYNVVA-------------------------ILNHFSGGGLAEFAMVKESLTASRP 98
            +K G  VV+                          +   + GG AE+ +V E      P
Sbjct: 76  GWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELP 135

Query: 99  LEVSAAEGAGL-PLAGLTALEALTQSAGL 126
             +S    A   PLA   A+ A+ + +G+
Sbjct: 136 ENLSLEAAALTEPLA--VAVHAVAERSGI 162

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 61/233 (26%), Positives = 86/233 (36%), Gaps = 62/233 (26%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWK-IKKGVARPILPRKFPYIPATDVAGEIIEVGS 60
              PVP P   EVLL+V+AS L   D      G   P        IP  + AG ++ VG 
Sbjct: 15  REFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQ---GVIPGHEPAGVVVAVGP 71

Query: 61  EVKNFKAGYNVVAILNHFSG---------------------------GGLAEFAMVKESL 93
            V +F+ G  V  ++ H+ G                           GG AE+ +V E  
Sbjct: 72  GVTHFRVGDRV--MVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKT 129

Query: 94  TASRPLEVSAAEGAGLPLAGLTALEALTQS------------AGLAKLGNSHVTATCGAR 141
               P ++S A+GA L     TA  AL +             AG   LG   +    GA 
Sbjct: 130 LIPLPDDLSFADGALLLCGIGTAYHALRRVGVSGRDTVLVVGAGPVGLGALMLARALGAE 189

Query: 142 NI----------EFVKSLGADEVLDYKTPDGAALKSP----SGRKYDAVIHCA 180
           ++          E  K+LGAD V++        ++      SG   D  I C+
Sbjct: 190 DVIGVDPSPERLELAKALGADFVIN---SGQDDVQEIRELTSGAGADVAIECS 239

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 47/193 (24%), Positives = 62/193 (32%), Gaps = 37/193 (19%)

Query: 33  GVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKES 92
           G++        P  P     G ++EVGS V  FK G  V      F  G  AE  +V  +
Sbjct: 10  GLSTGTEKLPLPLPPGYSSVGRVVEVGSGVTGFKPGDRV------FCFGPHAERVVVPAN 63

Query: 93  LTASRPLEVSAAEGAGLPLAGLTALEALTQS--------------------AGLAKL-GN 131
           L    P  +     A   L   TAL  +  +                    A LAK  G 
Sbjct: 64  LLVPLPDGLPPERAALTAL-AATALNGVRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGA 122

Query: 132 SHVTAT-CGARNIEFVKSLG-ADEVLDYKTPDGAALKSPSGRKYDAVIHC-ARGIPWSTF 188
             V      A   E  ++LG AD V               GR  D VI          T 
Sbjct: 123 REVVGVDPDAARRELAEALGPADPVAA------DTADEIGGRGADVVIEASGSPSALETA 176

Query: 189 EPNLAENGKVIDL 201
              L + G+V+ +
Sbjct: 177 LRLLRDRGRVVLV 189

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 2  VHVPVPTPRKDEVLLKVEASSLNAFD---WKIKKGVARPILPRKFPYIPATDVAGEIIEV 58
            VPVP P  ++VL+KV+ +++   D   +   +   + I     P +   +  GE++EV
Sbjct: 16 TDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTI---PVPMVVGHEFVGEVVEV 72

Query: 59 GSEVKNFKAG 68
          GSEV  FK G
Sbjct: 73 GSEVTGFKVG 82

Length = 341

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 52/214 (24%), Positives = 77/214 (35%), Gaps = 64/214 (29%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFD-WKIKKGVARPILP----RKF-----PY-IPATDVA 52
           VPVP     EVL+ V A+ +N  + W     +  P+      RK+     P+ I  +D +
Sbjct: 30  VPVPELGPGEVLVAVMAAGVNYNNVW---AALGEPVSTFAFLRKYGKLDLPFHIIGSDAS 86

Query: 53  GEIIEVGSEVKNFKAGYNVVAILNHFSG-------------------------GGLAEFA 87
           G +  VG  V  +K G  VVA                                G  AEFA
Sbjct: 87  GVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRDGDPMLSSEQRIWGYETNFGSFAEFA 146

Query: 88  MVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAGLA-KLGNS-------------- 132
           +VK+     +P  ++  E A   L G TA   L      A K G++              
Sbjct: 147 LVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPAAVKPGDNVLIWGAAGGLGSYA 206

Query: 133 -HVTATCGARNI---------EFVKSLGADEVLD 156
             +    G   +         E+ +SLGA+ V+D
Sbjct: 207 TQLARAGGGNPVAVVSSPEKAEYCRSLGAEAVID 240

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 49/184 (26%), Positives = 72/184 (39%), Gaps = 33/184 (17%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
             VP P   EVL+KVEA+ +N  D    KG       +  P  P  + +G ++  G    
Sbjct: 23  PEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYG--STKALPVPPGFEGSGTVVAAGGGPL 80

Query: 64  NF-KAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLE--VSAAEGAGLPLAGLTAL--- 117
                G  V  +   +  G  AE+A+         PL   VS  +GA   +  LTAL   
Sbjct: 81  AQSLIGKRVAFLAGSY--GTYAEYAVADAQ--QCLPLPDGVSFEQGASSFVNPLTALGML 136

Query: 118 --------EALTQSAGLAKLGNSHVTATCGARNIEFV------------KSLGADEVLDY 157
                   +A+  +A  + LG   V   C A  I+ +            K +GA+ VL+ 
Sbjct: 137 ETAREEGAKAVVHTAAASALGRMLV-RLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNS 195

Query: 158 KTPD 161
             PD
Sbjct: 196 SDPD 199

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 84/343 (24%), Positives = 123/343 (35%), Gaps = 102/343 (29%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIE---V 58
           V VP+P  +  EVL++    S++           R  +     Y P   + GE +    V
Sbjct: 23  VEVPLPELKDGEVLVRTLYLSVDP--------YMRGWMSDAKSYSPPVQL-GEPMRGGGV 73

Query: 59  G----SEVKNFKAGYNVVAILNHFSGGGLAEFAMVKES-----LTASRPLEVSAAEGA-G 108
           G    S   +FK G     +++ F   G  E+A+V  +     L  S  L +SA  G  G
Sbjct: 74  GEVVESRSPDFKVG----DLVSGF--LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLG 127

Query: 109 LPLAGLTALEALTQ------------SAG----------LAKLGNSHVTATCG-ARNIEF 145
           +   GLTA   LT+            SA           +AKL  + V    G      +
Sbjct: 128 MT--GLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRW 185

Query: 146 VKS-LGADEVLDYKTPD-GAALK--SPSG-RKY---------DAVIHCARGIPWSTFEPN 191
           +   LG D  ++YKTPD   ALK  +P G   Y         DA +              
Sbjct: 186 LVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDNVGGEILDAAL------------TL 233

Query: 192 LAENGKVI----------DLTPTPSAMLTFAWQKLT------FSKKQLVPLLVIPKGENL 235
           L + G++              P P  +     ++LT             P       E L
Sbjct: 234 LNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFP-------EAL 286

Query: 236 VFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL 278
             L K L EGK+K   D    L  A +A+     G  TGK+++
Sbjct: 287 AELAKWLAEGKLKYREDVVEGLENAPEAFLGLFTGKNTGKLVV 329

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 25/72 (34%), Positives = 34/72 (47%)

Query: 2  VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
            VPVP P   EVL+KV A+S+   D  I           K P +   +VAGE++ +G  
Sbjct: 14 TEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPG 73

Query: 62 VKNFKAGYNVVA 73
          V+  K G  V  
Sbjct: 74 VEGIKVGDYVSV 85

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 59/223 (26%), Positives = 81/223 (36%), Gaps = 60/223 (26%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKG---VARPILPRKFPYIPATDVAGEIIEV 58
           V  PVP P   E+L++V A  +   D  + +G   V RP +       P  +V GE+   
Sbjct: 18  VERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRV------TPGHEVVGEVAGR 71

Query: 59  GSEVKNFKAGYNV-VAILNHFSG------------------------GGLAEFAMVKESL 93
           G++   F  G  V +A L    G                        GG AE+  V  + 
Sbjct: 72  GADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAF 131

Query: 94  TASRPLEVSAAEGAGLPLAGLTALEALTQSA-------GLAKLGNS-HVTA--------- 136
               P      E A L  AG+    AL +++       GL   G S H+TA         
Sbjct: 132 AYRLPTGYDDVELAPLLCAGIIGYRALLRASLPPGGRLGLYGFGGSAHLTAQVALAQGAT 191

Query: 137 ----TCGARNIEFVKSLGADEVLD-YKTP----DGAALKSPSG 170
               T GA       +LGA      Y TP    D A L +P+G
Sbjct: 192 VHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG 234

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 3  HVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVAR----PILPR--KFPYIPATDVAGEII 56
           VPVP P   E+L+KVEA  + A D K   G          P   K P IP  +  G ++
Sbjct: 16 EVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVV 75

Query: 57 EVGSEVKN--FKAGYNVVA 73
          E+G   +    K G  V++
Sbjct: 76 ELGEGAEERGVKVGDRVIS 94

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 76/342 (22%), Positives = 113/342 (33%), Gaps = 70/342 (20%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
              P P P   +VL++V A+ +   D  I +G   P +P     I   +  GE++EVG  
Sbjct: 16  EEPPPPIPGPGDVLIRVTATGICGSDLHIYRG-GEPFVPPGDI-ILGHEFVGEVVEVG-V 72

Query: 62  VKNFKAG---------------------YNVVAILNHF--------SGGGLAEFAMV-KE 91
           V+ FK G                     YN+      +          GG AE+  V  +
Sbjct: 73  VRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPAD 132

Query: 92  SLTASRPLEVSAAEGAGL--PLAGLTALEALTQSAGLAKLGNSHVT-------------A 136
              A  P  +     A L  PLA  TA     + A +   G   V               
Sbjct: 133 FNLAKLPDGIDEEAAA-LTEPLA--TAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAK 189

Query: 137 TCGARNI----------EFVKSLGADEVLDYKTPDGAALKS---PSGRKYDAVIHCARGI 183
             GA  +          E  K  G  +V+   + D A  +      GR  D VI    G 
Sbjct: 190 LLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV-GS 248

Query: 184 PWSTFE--PNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKL 241
           P +  +    L   G V+ +       +      +   +  L   L     E+    + L
Sbjct: 249 PPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERALDL 308

Query: 242 LKEGKIKTLIDSKHL--LSKAEDAWAKGADGHAT-GKIILEP 280
           L  GKI       H   L  A +A+   AD      K++L+P
Sbjct: 309 LASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP 350

Length = 350

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 49/185 (26%), Positives = 68/185 (36%), Gaps = 34/185 (18%)

Query: 2   VHVPVPTPR-KDEVLLKVEASSLNAFDWKIKKGVARPILPRK---FPYIPATDVAGEIIE 57
               +P P   +EVL+K+ A+ +N  D    +GV  PI P      P +   +  GE+++
Sbjct: 19  ESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVY-PIKPPTTPEPPAVGGNEGVGEVVK 77

Query: 58  VGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTAL 117
           VGS VK+ K G  V  I      G     A+V        P +V   + A L +   TA 
Sbjct: 78  VGSGVKSLKPGDWV--IPLRPGLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAY 135

Query: 118 EALTQSAGLAK-------LGNSHV----TATCGARNI----------------EFVKSLG 150
             L     L           NS V            I                E +K+LG
Sbjct: 136 RLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALG 195

Query: 151 ADEVL 155
           AD VL
Sbjct: 196 ADHVL 200

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 45/182 (24%), Positives = 64/182 (35%), Gaps = 42/182 (23%)

Query: 4   VPVPTPRKDEVLLKVEA-----SSLNAFDWKIKKGVARPIL--PRKFPYIPATDVAGEII 56
            P PTP   +VL++VE      S L AF+        RP    P + P  P  +  G ++
Sbjct: 12  HPRPTPGPGQVLVRVEGCGVCGSDLPAFNQ------GRPWFVYPAE-PGGPGHEGWGRVV 64

Query: 57  EVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTA 116
            +G  V+    G  V  +    SGG  AE+ +         P  +      G PL    A
Sbjct: 65  ALGPGVRGLAVGDRVAGL----SGGAFAEYDLADADHAVPLPSLLDGQAFPGEPLG--CA 118

Query: 117 LEALTQS------------AGLAKLGNSHVTATCGARNI----------EFVKSLGADEV 154
           L    +             AG   L    + A  GAR +             + LGA EV
Sbjct: 119 LNVFRRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEV 178

Query: 155 LD 156
           + 
Sbjct: 179 VT 180

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 2  VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
            V +  PR  EVL+++ A+ +   D     G      P  FP +   + AG +  VG  
Sbjct: 18 EEVDLDPPRAGEVLVRITATGVCHTDAHTLSG----DDPEGFPAVLGHEGAGIVEAVGEG 73

Query: 62 VKNFKAGYNVVAILNH 77
          V + K G +V+ +   
Sbjct: 74 VTSVKPGDHVILLFTP 89

Length = 366

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 13/79 (16%)

Query: 1  HVHVPVPTPRKDEVLLKVEA-----SSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEI 55
           V +P P P   EVL++V+      S L+ +  +       P     +P I   +++GE+
Sbjct: 14 VVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGR------NPFA--SYPRILGHELSGEV 65

Query: 56 IEVGSEVKNFKAGYNVVAI 74
          +EVG  V   K G  VV  
Sbjct: 66 VEVGEGVAGLKVGDRVVVD 84

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 6  VPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNF 65
          +  P   EVL+++ A+ L   D  +  G     LP   P +   + AG + EVG  V   
Sbjct: 20 LDDPGPGEVLVRIAAAGLCHSDLHVVTGD----LPAPLPAVLGHEGAGVVEEVGPGVTGV 75

Query: 66 KAGYNVV 72
          K G +VV
Sbjct: 76 KPGDHVV 82

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 9/106 (8%)

Query: 126 LAK-LGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPDGAA--LKSPSGRKYDAVIHCAR 181
           LAK LG + V A       +E  K LGAD V++Y+  D      +   GR  D VI C  
Sbjct: 9   LAKALGAARVIAVDRSEEKLELAKELGADHVINYRDEDFVERVRELTGGRGVDVVIDCV- 67

Query: 182 GIPWSTFEP---NLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLV 224
           G P +T E     L   G+V+ +     A + F  + L   +  ++
Sbjct: 68  GAP-ATLEQALELLRPGGRVVVVGLPGGAPVPFPLRDLLLKELTIL 112

Length = 131

>gnl|CDD|176200 cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 7  PTPRKDEVLLKVEASSLNAFDWK-IKKGVARPILPR---KFPYIPATDVAGEIIEVGSEV 62
          P    DE+L++V + SL    WK   +G     +P    K P I   + AG I++VG + 
Sbjct: 22 PEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGKKW 81

Query: 63 KN-FKAGYNVV 72
          +  +K G   V
Sbjct: 82 QGKYKPGQRFV 92

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 410

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 4  VPVPTPR-KDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEV 62
          VP+P  +   + ++KV A+++   D  I +G   P  P    ++   +  GE++EVG EV
Sbjct: 17 VPIPQIQDPTDAIVKVTAAAICGSDLHIYRG-HIPSTP---GFVLGHEFVGEVVEVGPEV 72

Query: 63 KNFKAGYNVVA 73
          +  K G  VV+
Sbjct: 73 RTLKVGDRVVS 83

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 39/169 (23%), Positives = 60/169 (35%), Gaps = 55/169 (32%)

Query: 42  KFPYIPATDVAGEIIEVGSEVKNFKAG--------------------------------Y 69
            +P +P  +V GE++EVGS+V  F  G                                Y
Sbjct: 62  NYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSY 121

Query: 70  NVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQ----SAG 125
           N V      + GG A   +V +      P  ++  + A L  AG+T    L+      +G
Sbjct: 122 NDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSG 181

Query: 126 L-----------------AKLGNSHVT--ATCGARNIEFVKSLGADEVL 155
           L                 AK    HVT  ++   +  E ++ LGAD+ L
Sbjct: 182 LRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYL 230

Length = 357

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 53/255 (20%), Positives = 83/255 (32%), Gaps = 80/255 (31%)

Query: 9   PRKDEVLLKVEASSL---------NAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVG 59
              D+V +K+    +         N  +W           P K+P +P  ++ G ++ VG
Sbjct: 22  LGPDDVDIKITYCGVCHSDLHTLRN--EWG----------PTKYPLVPGHEIVGIVVAVG 69

Query: 60  SEVKNFKAG--------------------------------YNVVAILNHFSGGGLAEFA 87
           S+V  FK G                                YN        + GG A+  
Sbjct: 70  SKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHI 129

Query: 88  MVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS----------AGL----------- 126
           +V E      P  + +A  A L  AG+T    L ++           G+           
Sbjct: 130 VVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKRNGVGPGKRVGVVGIGGLGHLAVKFA 189

Query: 127 AKLGNSHVTA-TCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARG-IP 184
             LG + VTA +      E    LGADE +   T D  A+K  +G   D +I        
Sbjct: 190 KALG-AEVTAFSRSPSKKEDALKLGADEFIA--TKDPEAMKKAAG-SLDLIIDTVSASHD 245

Query: 185 WSTFEPNLAENGKVI 199
              +   L   G ++
Sbjct: 246 LDPYLSLLKPGGTLV 260

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 50/235 (21%), Positives = 80/235 (34%), Gaps = 67/235 (28%)

Query: 4   VPVPTPRKDEVLLKVEA-----SSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEV 58
            P P P   EV ++V A     S L+ +    + G    +  R+ P +   +V+G +  V
Sbjct: 14  RPAPEPGPGEVRVRVAAGGICGSDLHYY----QHGGFGTVRLRE-PMVLGHEVSGVVEAV 68

Query: 59  GSEVKNFKAGYNVVAI----------------LNH-----FSG---------GGLAEFAM 88
           G  V     G   VA+                 N      F G         GG  E+ +
Sbjct: 69  GPGVTGLAPG-QRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLV 127

Query: 89  VKESLTASRPLEVSAAEGA-GLPLAGLTALEALTQS---------------------AGL 126
           V  S     P  +S    A   PLA   AL A+ ++                     A  
Sbjct: 128 VDASQCVPLPDGLSLRRAALAEPLA--VALHAVNRAGDLAGKRVLVTGAGPIGALVVAAA 185

Query: 127 AKLGNSHVTAT-CGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCA 180
            + G + + AT      +   +++GADE ++      AA  +  G  +D V   +
Sbjct: 186 RRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGD-FDVVFEAS 239

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 9  PRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAG 68
          P+  EVL+K+ AS L   D  +  G   P +PR +P +   + AG + +VG  V   K G
Sbjct: 24 PKAGEVLVKLVASGLCHSDEHLVTG-DLP-MPR-YPILGGHEGAGVVTKVGPGVTGVKPG 80

Query: 69 YNVV 72
           +VV
Sbjct: 81 DHVV 84

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 12/127 (9%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFD-WKIKKGVA-RPILPRKFPYIPATDVAGEIIEVGSE 61
           VP PTP   EVL++   S ++  D W I+     +P LP     I  ++  G +  VG  
Sbjct: 21  VPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPA----IGGSEAVGVVDAVGEG 76

Query: 62  VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVS---AAEGAGLPLAGLTALE 118
           VK  + G  V     H   G  AE+ +         P  +S   AA+   +PL+ L  L+
Sbjct: 77  VKGLQVGQRVAVAPVH---GTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLLD 133

Query: 119 ALTQSAG 125
            L    G
Sbjct: 134 FLGVKPG 140

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 4  VPVPTPRK-DEVLLKVEASSLNAFDWKIKKGVARPILPR-KFPYIPATDVAGEIIEVGSE 61
          VP P  +   + +++V A+S+   D  I +G      P  K   I   +  GE++EVGS+
Sbjct: 17 VPDPKIQGPHDAIVRVTATSICGSDLHIYRGGV----PGAKHGMILGHEFVGEVVEVGSD 72

Query: 62 VKNFKAGYNVVA 73
          VK  K G  V  
Sbjct: 73 VKRLKPGDRVSV 84

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 53/193 (27%), Positives = 68/193 (35%), Gaps = 55/193 (28%)

Query: 53  GEIIEVGSEVKNFKAGYNVV--AILNHF------------SGGGL-------------AE 85
           G + EVGSEVK+FK G  V+  AI   +            SGG L             AE
Sbjct: 63  GVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAE 122

Query: 86  FAMVKES------LTASRPLE------------VSAAEGAGLPLAGLTALEA-----LTQ 122
           +  V ++      L      E               AE A + L    A+       L  
Sbjct: 123 YFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFHGAELANIKLGDTVAVFGIGPVGLMA 182

Query: 123 SAGLAKLGNSHVTATCGARN-IEFVKSLGADEVLDYKT--PDGAALKSPSGRKYDAVIHC 179
            AG    G   + A     N +E  K  GA +++DYK        LK   G+  DAVI  
Sbjct: 183 VAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIA 242

Query: 180 ARGIPWSTFEPNL 192
             G    TFE  L
Sbjct: 243 GGGQ--DTFEQAL 253

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 59/249 (23%), Positives = 76/249 (30%), Gaps = 74/249 (29%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPA--------------- 48
           VP+P      VL++V  + +   D     G  RP +P   P I                 
Sbjct: 18  VPLPDLEPGAVLVRVRLAGVCGSDVHTVAGR-RPRVP--LPIILGHEGVGRVVALGGGVT 74

Query: 49  TDVAGEIIEVGSEV-----------------------KNFKAGYNVVAILNHFSGGGLAE 85
           TDVAGE ++VG  V                          K G+       H S GG AE
Sbjct: 75  TDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLS-GGYAE 133

Query: 86  FAMVKESLTASR-PLEVSAAEGAGLPLAGLTALEALTQSAGLAKLGNSHV---------- 134
              +       R P  V     A    A  T L AL + AG    G++ V          
Sbjct: 134 HIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDR-AGPVGAGDTVVVQGAGPLGLY 192

Query: 135 -TATC---GARNI----------EFVKSLGADEVLDYKTPD-----GAALKSPSGRKYDA 175
             A     GAR +          E  +  GAD  +D                  GR  D 
Sbjct: 193 AVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADV 252

Query: 176 VIHCARGIP 184
           VI  + G P
Sbjct: 253 VIEAS-GHP 260

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	280
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	100.0
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	100.0
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	100.0
COG2130	340	Putative NADP-dependent oxidoreductases [General f	100.0
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	100.0
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	100.0
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	100.0
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	100.0
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	100.0
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	100.0
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	100.0
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	100.0
PTZ00354	334	alcohol dehydrogenase; Provisional	100.0
PRK13771	334	putative alcohol dehydrogenase; Provisional	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	100.0
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	100.0
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	100.0
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	100.0
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	100.0
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	100.0
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	100.0
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	100.0
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	100.0
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	100.0
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	100.0
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	100.0
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	100.0
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	100.0
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	100.0
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	100.0
PLN02702	364	L-idonate 5-dehydrogenase	100.0
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	100.0
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	100.0
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	100.0
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	100.0
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	100.0
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.98
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.98
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.98
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.98
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.98
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.98
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.98
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.98
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.97
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.97
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.97
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.97
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.97
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.97
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.97
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.96
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.96
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.96
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.95
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.95
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.93
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.91
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.81
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.66
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.52
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.61
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.35
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	96.8
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	95.57
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	95.52
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.96
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	89.21
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	86.54
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	86.51
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	84.37
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	84.14
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	83.51
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	83.27
PTZ00414	100	10 kDa heat shock protein; Provisional	82.5
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	82.26
cd00320	93	cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); C	82.11
PRK08306	296	dipicolinate synthase subunit A; Reviewed	81.39
PRK00364	95	groES co-chaperonin GroES; Reviewed	80.41

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=1.4e-50  Score=330.51  Aligned_cols=272  Identities=28%  Similarity=0.367  Sum_probs=239.6

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEE-e-----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVA-I-----   74 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~-~-----   74 (280)
                      ++|++.|.|+++||+|+++|+|+|++|++..+|..+.   ..+|+++|||.+|+|+++|++|+.||+||||.. +     
T Consensus        18 i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~---~~~P~ipGHEivG~V~~vG~~V~~~k~GDrVgV~~~~~~C   94 (339)
T COG1064          18 IEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPV---PKLPLIPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISC   94 (339)
T ss_pred             EEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCC---CCCCccCCcceEEEEEEecCCCccCCCCCEEEecCccCCC
Confidence            3689999999999999999999999999999999874   358999999999999999999999999999976 3     


Q ss_pred             -------------------ecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------
Q 048785           75 -------------------LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------  125 (280)
Q Consensus        75 -------------------~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------  125 (280)
                                         .++..+|+|+||+++|+.+++++|+++++++||.+.|++.|+|.+|.+.--          
T Consensus        95 g~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~alk~~~~~pG~~V~I~G  174 (339)
T COG1064          95 GECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKKANVKPGKWVAVVG  174 (339)
T ss_pred             CCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeehhhcCCCCCCEEEEEC
Confidence                               234578999999999999999999999999999999999999999966311          


Q ss_pred             ----------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCCCccccccccc
Q 048785          126 ----------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLA  193 (280)
Q Consensus       126 ----------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~  193 (280)
                                +|+++|++|++++++ ++.++++++|++++++.++.+ .+....    .+|+++|+++...++..+++|+
T Consensus       175 ~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~----~~d~ii~tv~~~~~~~~l~~l~  250 (339)
T COG1064         175 AGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKE----IADAIIDTVGPATLEPSLKALR  250 (339)
T ss_pred             CcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHh----hCcEEEECCChhhHHHHHHHHh
Confidence                      999999999999965 889999999999999977433 122211    2999999999666999999999


Q ss_pred             CCcEEEEeCCCc-hhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCC
Q 048785          194 ENGKVIDLTPTP-SAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHA  272 (280)
Q Consensus       194 ~~g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~  272 (280)
                      ++|+++.+|... .....++...+.++++++.++. ..++.+.++++++..+|+++|.+.+.++++++++||+.|.+++.
T Consensus       251 ~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~-~g~~~d~~e~l~f~~~g~Ikp~i~e~~~l~~in~A~~~m~~g~v  329 (339)
T COG1064         251 RGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSL-VGTRADLEEALDFAAEGKIKPEILETIPLDEINEAYERMEKGKV  329 (339)
T ss_pred             cCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEe-cCCHHHHHHHHHHHHhCCceeeEEeeECHHHHHHHHHHHHcCCe
Confidence            999999999774 4445566777788999999977 46899999999999999999999779999999999999999999


Q ss_pred             cCcEEEeC
Q 048785          273 TGKIILEP  280 (280)
Q Consensus       273 ~gkvvi~~  280 (280)
                      .|+.||.+
T Consensus       330 ~gR~Vi~~  337 (339)
T COG1064         330 RGRAVIDM  337 (339)
T ss_pred             eeEEEecC
Confidence            99999864

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=1.7e-46  Score=313.62  Aligned_cols=278  Identities=33%  Similarity=0.467  Sum_probs=231.5

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCC
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSG   80 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   80 (280)
                      ++|+|.|.|+++||+||+++++||+.|.+..+|..+  ....+|+++|.|++|+|+++|++|+.+++||+|+........
T Consensus        17 ~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~--~~~~~P~i~G~d~aG~V~avG~~V~~~~~GdrV~~~~~~~~~   94 (326)
T COG0604          17 VVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAP--PVRPLPFIPGSEAAGVVVAVGSGVTGFKVGDRVAALGGVGRD   94 (326)
T ss_pred             EEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCC--CCCCCCCcccceeEEEEEEeCCCCCCcCCCCEEEEccCCCCC
Confidence            368899999999999999999999999999999732  123689999999999999999999999999999987411147


Q ss_pred             CcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEe
Q 048785           81 GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATC  138 (280)
Q Consensus        81 g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~  138 (280)
                      |+|+||..+|++.++++|+++++++||+++++++|||++|....+                      ||+++|+.+++++
T Consensus        95 G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~  174 (326)
T COG0604          95 GGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVV  174 (326)
T ss_pred             CcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEe
Confidence            999999999999999999999999999999999999999988544                      9999997655555


Q ss_pred             -cCCcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCc-hhhHHHHHh
Q 048785          139 -GARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTP-SAMLTFAWQ  214 (280)
Q Consensus       139 -~~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~-~~~~~~~~~  214 (280)
                       ++++.++++++|++++++|++.+  ....+.+.++++|+|||++|++.+..++++|+++|+++.+|... .....++..
T Consensus       175 ~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~~~g~~~~~~~~~  254 (326)
T COG0604         175 SSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGALSGGPPVPLNLL  254 (326)
T ss_pred             cCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCCHHHHHHHHHHhccCCEEEEEecCCCCCccccCHH
Confidence             56778899999999999998876  23445677789999999999999999999999999999998766 333333444


Q ss_pred             hhhccceeeEEEEEcCC-----HHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhc-CCCcCcEEEeC
Q 048785          215 KLTFSKKQLVPLLVIPK-----GENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGAD-GHATGKIILEP  280 (280)
Q Consensus       215 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~-~~~~gkvvi~~  280 (280)
                      .+..+.....+......     .+.+.++.+++++|++++.+..+||+++..++...+.. ++..||+|+++
T Consensus       255 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~e~~~a~a~~~~~~~~~GKvvl~~  326 (326)
T COG0604         255 PLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLKPVIDRVYPLAEAPAAAAHLLLERRTTGKVVLKV  326 (326)
T ss_pred             HHhhccEEEEEecceecchHHHHHHHHHHHHHHHcCCCcceeccEechhhhHHHHHHHHcccCCcceEEEeC
Confidence            44455666666554333     56788899999999999999999999996555554444 48889999975

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=4.3e-44  Score=274.11  Aligned_cols=274  Identities=28%  Similarity=0.364  Sum_probs=241.8

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCC
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSG   80 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   80 (280)
                      |++.|+|+|.++|.+||..|+|+|..|..+.+|.+.   +.+.|++||.|.+|+|+++|+.|+++++||||+...   .+
T Consensus        25 ~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~---~~plPytpGmEaaGvVvAvG~gvtdrkvGDrVayl~---~~   98 (336)
T KOG1197|consen   25 LEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYD---PAPLPYTPGMEAAGVVVAVGEGVTDRKVGDRVAYLN---PF   98 (336)
T ss_pred             EeeecCCCCCCCceEEeehhcCccHHHHHHhccccC---CCCCCcCCCcccceEEEEecCCccccccccEEEEec---cc
Confidence            578999999999999999999999999999999984   347899999999999999999999999999999876   78


Q ss_pred             CcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEe
Q 048785           81 GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATC  138 (280)
Q Consensus        81 g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~  138 (280)
                      |.|+|+..+|...++++|+.+++.+||++.+.++|||..+++..+                      +++..|+++|+++
T Consensus        99 g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~a  178 (336)
T KOG1197|consen   99 GAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATA  178 (336)
T ss_pred             hhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEe
Confidence            999999999999999999999999999999999999999987655                      8888999999999


Q ss_pred             cC-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhh
Q 048785          139 GA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQK  215 (280)
Q Consensus       139 ~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~  215 (280)
                      +. ++++.+++.|+++.|+++.++  ....+.++++|+|+++|.+|.+.+...+.+|++.|.+|.+|..++..-.+.+++
T Consensus       179 sTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKGVd~vyDsvG~dt~~~sl~~Lk~~G~mVSfG~asgl~~p~~l~~  258 (336)
T KOG1197|consen  179 STAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKGVDAVYDSVGKDTFAKSLAALKPMGKMVSFGNASGLIDPIPLNQ  258 (336)
T ss_pred             ccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCCceeeeccccchhhHHHHHHhccCceEEEeccccCCCCCeehhh
Confidence            75 899999999999999998877  445567889999999999999999999999999999999997777665566666


Q ss_pred             hhccceeeEEEEEcC---CHH----HHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          216 LTFSKKQLVPLLVIP---KGE----NLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       216 ~~~~~~~~~~~~~~~---~~~----~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ++-+.+++...++.+   .+.    ...+++.++.+|.+++.|.++|||+++.+|+..++++.+.||+++.+
T Consensus       259 ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~I~~~ypls~vadA~~diesrktvGkvlLlp  330 (336)
T KOG1197|consen  259 LSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLKIHIDHVYPLSKVADAHADIESRKTVGKVLLLP  330 (336)
T ss_pred             cChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhcCccceeeeeecchHHHHHHHHHHHhhhccceEEEeC
Confidence            666666655433322   222    34677888999999999999999999999999999999999999864

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=7.4e-44  Score=282.79  Aligned_cols=275  Identities=22%  Similarity=0.236  Sum_probs=225.5

Q ss_pred             CCCCCCCCC-CCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec---
Q 048785            1 HVHVPVPTP-RKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN---   76 (280)
Q Consensus         1 ~~~~~~~~~-~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~---   76 (280)
                      ++++|+|++ +|+||+|++.++|||++|++.+.......+-.+.|+++|||.+|+|.++|+.|+++|+||||+.-.+   
T Consensus        18 i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk~LkVGDrVaiEpg~~c   97 (354)
T KOG0024|consen   18 IEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVKHLKVGDRVAIEPGLPC   97 (354)
T ss_pred             EeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhcccccccccCCeEEecCCCcc
Confidence            467889986 9999999999999999999988766554333468999999999999999999999999999986311   


Q ss_pred             ----------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh---------
Q 048785           77 ----------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG---------  125 (280)
Q Consensus        77 ----------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~---------  125 (280)
                                            ...+|++++|++.++++|+|+|++++++++|++.. ++.+|+|.++ ++         
T Consensus        98 ~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~eP-LsV~~HAcr~-~~vk~Gs~vLV  175 (354)
T KOG0024|consen   98 RDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIEP-LSVGVHACRR-AGVKKGSKVLV  175 (354)
T ss_pred             ccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhcccccc-hhhhhhhhhh-cCcccCCeEEE
Confidence                                  24679999999999999999999999999999932 4599999944 33         


Q ss_pred             ------------hhhhCCC-EEEEEe-cCCcHHHHHhcCCCeeecCCCCC--c---cccc-CCCCCcccEEEECCCCCC-
Q 048785          126 ------------LAKLGNS-HVTATC-GARNIEFVKSLGADEVLDYKTPD--G---AALK-SPSGRKYDAVIHCARGIP-  184 (280)
Q Consensus       126 ------------la~~~G~-~Vi~~~-~~~~~~~~~~~g~~~v~~~~~~~--~---~~~~-~~~~~~~d~v~d~~g~~~-  184 (280)
                                  .|+++|| +|+.++ .+.|++.++++|++.+.+.....  .   ...+ ..+...+|+.|||+|-.. 
T Consensus       176 ~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~  255 (354)
T KOG0024|consen  176 LGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVT  255 (354)
T ss_pred             ECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEccCchHH
Confidence                        8899999 888888 56899999999999887654433  1   1222 233356999999999754 


Q ss_pred             cccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCe--eEeccceecchhHHH
Q 048785          185 WSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKI--KTLIDSKHLLSKAED  262 (280)
Q Consensus       185 ~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~--~~~~~~~~~~~~~~~  262 (280)
                      ++.++.+++.+|.+++.+... ....|+...+..++.++.+.++ ....+++.+++++++|++  ++++++.|++++..+
T Consensus       256 ~~aai~a~r~gGt~vlvg~g~-~~~~fpi~~v~~kE~~~~g~fr-y~~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~e  333 (354)
T KOG0024|consen  256 IRAAIKATRSGGTVVLVGMGA-EEIQFPIIDVALKEVDLRGSFR-YCNGDYPTAIELVSSGKIDVKPLITHRYKFDDADE  333 (354)
T ss_pred             HHHHHHHhccCCEEEEeccCC-CccccChhhhhhheeeeeeeee-eccccHHHHHHHHHcCCcCchhheecccccchHHH
Confidence            899999999999988877443 3355666777889999999874 567799999999999997  579999999999999


Q ss_pred             HHHHHhcCCC-cCcEEEe
Q 048785          263 AWAKGADGHA-TGKIILE  279 (280)
Q Consensus       263 a~~~~~~~~~-~gkvvi~  279 (280)
                      ||+.++.++. .-|+++.
T Consensus       334 Af~~~~~~~~~~iKv~i~  351 (354)
T KOG0024|consen  334 AFETLQHGEEGVIKVIIT  351 (354)
T ss_pred             HHHHHHhCcCCceEEEEe
Confidence            9999998874 3477775

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.1e-42  Score=273.91  Aligned_cols=272  Identities=26%  Similarity=0.350  Sum_probs=226.4

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEE-Ee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVV-AI------   74 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~-~~------   74 (280)
                      .+++.|+++++||+|+++|||||++|++...|..+.   ..+|.++|||.+|+|+++|++|+.|++||+|- ++      
T Consensus        27 ~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~---s~~PlV~GHEiaG~VvkvGs~V~~~kiGD~vGVg~~~~sC~  103 (360)
T KOG0023|consen   27 FSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGL---SKYPLVPGHEIAGVVVKVGSNVTGFKIGDRVGVGWLNGSCL  103 (360)
T ss_pred             eEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCc---ccCCccCCceeeEEEEEECCCcccccccCeeeeeEEecccc
Confidence            578899999999999999999999999999998863   58999999999999999999999999999983 32      


Q ss_pred             --------------------ecCC-----CCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----
Q 048785           75 --------------------LNHF-----SGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----  125 (280)
Q Consensus        75 --------------------~~~~-----~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----  125 (280)
                                          .+..     ..|+||+|+++++.++++||+++..++||.+.|++.|+|.+|....-    
T Consensus       104 ~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspLk~~g~~pG~  183 (360)
T KOG0023|consen  104 SCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGITVYSPLKRSGLGPGK  183 (360)
T ss_pred             CccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhccchhhcceEEeehhHHcCCCCCc
Confidence                                1112     34559999999999999999999999999999999999999954311    


Q ss_pred             ----------------hhhhCCCEEEEEecC--CcHHHHHhcCCCeeecCCC-CCc-ccccCCCCCcccEEEECCCCCCc
Q 048785          126 ----------------LAKLGNSHVTATCGA--RNIEFVKSLGADEVLDYKT-PDG-AALKSPSGRKYDAVIHCARGIPW  185 (280)
Q Consensus       126 ----------------la~~~G~~Vi~~~~~--~~~~~~~~~g~~~v~~~~~-~~~-~~~~~~~~~~~d~v~d~~g~~~~  185 (280)
                                      +|+++|.+|+++++.  +|.+.++.+|++..++..+ .++ .....+.+.++|.+.+. ....+
T Consensus       184 ~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~-a~~~~  262 (360)
T KOG0023|consen  184 WVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL-AEHAL  262 (360)
T ss_pred             EEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec-cccch
Confidence                            999999999999964  4566667899999998774 332 22223333445555544 33458


Q ss_pred             ccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHH
Q 048785          186 STFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWA  265 (280)
Q Consensus       186 ~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~  265 (280)
                      +.++.+++.+|++|++|.+.. ...++...+.+++..+.++.. +++.+.++++++.++|.+++.+. ..+++++++||+
T Consensus       263 ~~~~~~lk~~Gt~V~vg~p~~-~~~~~~~~lil~~~~I~GS~v-G~~ket~E~Ldf~a~~~ik~~IE-~v~~~~v~~a~e  339 (360)
T KOG0023|consen  263 EPLLGLLKVNGTLVLVGLPEK-PLKLDTFPLILGRKSIKGSIV-GSRKETQEALDFVARGLIKSPIE-LVKLSEVNEAYE  339 (360)
T ss_pred             HHHHHHhhcCCEEEEEeCcCC-cccccchhhhcccEEEEeecc-ccHHHHHHHHHHHHcCCCcCceE-EEehhHHHHHHH
Confidence            899999999999999997776 666666777788888888774 68999999999999999999887 899999999999


Q ss_pred             HHhcCCCcCcEEEeC
Q 048785          266 KGADGHATGKIILEP  280 (280)
Q Consensus       266 ~~~~~~~~gkvvi~~  280 (280)
                      +|.+++...+.|+.+
T Consensus       340 rm~kgdV~yRfVvD~  354 (360)
T KOG0023|consen  340 RMEKGDVRYRFVVDV  354 (360)
T ss_pred             HHHhcCeeEEEEEEc
Confidence            999999988988753

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=2.9e-41  Score=289.97  Aligned_cols=272  Identities=21%  Similarity=0.274  Sum_probs=223.7

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH----   77 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~----   77 (280)
                      +++|.|.|+++||+||+.+++||++|+..+.|..+    ..+|.++|||++|+|+++|++++++++||+|++....    
T Consensus        24 ~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~----~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~   99 (371)
T cd08281          24 EEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRP----RPLPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGH   99 (371)
T ss_pred             EEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCC----CCCCccCCccceeEEEEeCCCCCcCCCCCEEEEccCCCCCC
Confidence            57888999999999999999999999999888653    2568999999999999999999999999999863110    


Q ss_pred             -----------------------------------------CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHH
Q 048785           78 -----------------------------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTA  116 (280)
Q Consensus        78 -----------------------------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a  116 (280)
                                                               ...|+|+||+.+|.+.++++|+++++++|++++++++||
T Consensus       100 c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta  179 (371)
T cd08281         100 CRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTG  179 (371)
T ss_pred             CccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccceEECCCCCChHHhhhhcchHHHH
Confidence                                                     013799999999999999999999999999999999999


Q ss_pred             HHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCC-cc-cccCCCCC
Q 048785          117 LEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGR  171 (280)
Q Consensus       117 ~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~  171 (280)
                      |+++...++                     +|+.+|+ +|+++++ ++++++++++|+++++++++.+ .+ ....+.+ 
T Consensus       180 ~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~-  258 (371)
T cd08281         180 VGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGG-  258 (371)
T ss_pred             HHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCC-
Confidence            999755433                     8899999 7998885 5889999999999999887654 22 2233334 


Q ss_pred             cccEEEECCCCC-CcccccccccCCcEEEEeCCCch-hhHHHHHhhhhccceeeEEEEEc--CCHHHHHHHHHHHHCCCe
Q 048785          172 KYDAVIHCARGI-PWSTFEPNLAENGKVIDLTPTPS-AMLTFAWQKLTFSKKQLVPLLVI--PKGENLVFLVKLLKEGKI  247 (280)
Q Consensus       172 ~~d~v~d~~g~~-~~~~~~~~l~~~g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~g~~  247 (280)
                      ++|++|||+|+. .+..++++++++|+++.+|.... ....+....+..++.++.+....  ...++++++++++++|++
T Consensus       259 g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~i  338 (371)
T cd08281         259 GVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRL  338 (371)
T ss_pred             CCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEEecCCCChHHHHHHHHHHHHcCCC
Confidence            899999999974 58889999999999999985432 22344555666788888886542  135788999999999998


Q ss_pred             e--EeccceecchhHHHHHHHHhcCCCcCcEEE
Q 048785          248 K--TLIDSKHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       248 ~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                      +  ++++++|+|+|+++||+.+.+++..+|+++
T Consensus       339 ~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi~  371 (371)
T cd08281         339 PVDKLLTHRLPLDEINEGFDRLAAGEAVRQVIL  371 (371)
T ss_pred             CchhheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence            6  468899999999999999999988888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=9.4e-41  Score=283.82  Aligned_cols=274  Identities=26%  Similarity=0.308  Sum_probs=223.4

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      +++|.|.++++||+||+.++++|++|+..+.|....  +..+|.++|||++|+|+++|++++.+++||+|+...      
T Consensus        15 ~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~--~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~   92 (339)
T cd08239          15 REFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRA--PAYQGVIPGHEPAGVVVAVGPGVTHFRVGDRVMVYHYVGCGA   92 (339)
T ss_pred             EecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCc--cCCCCceeccCceEEEEEECCCCccCCCCCEEEECCCCCCCC
Confidence            578999999999999999999999999988776431  123578999999999999999999999999998742      


Q ss_pred             -------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh-----------
Q 048785           76 -------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-----------  125 (280)
Q Consensus        76 -------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----------  125 (280)
                                         +....|+|+||+.+|.+.++++|+++++++++++++++.|||+++....-           
T Consensus        93 c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~G~  172 (339)
T cd08239          93 CRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHALRRVGVSGRDTVLVVGA  172 (339)
T ss_pred             ChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHhcCCCCCCEEEEECC
Confidence                               22346999999999999999999999999999999999999999854210           


Q ss_pred             ---------hhhhCCCE-EEEEec-CCcHHHHHhcCCCeeecCCCCCc-ccccCCCCCcccEEEECCCCCC-cccccccc
Q 048785          126 ---------LAKLGNSH-VTATCG-ARNIEFVKSLGADEVLDYKTPDG-AALKSPSGRKYDAVIHCARGIP-WSTFEPNL  192 (280)
Q Consensus       126 ---------la~~~G~~-Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~-~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l  192 (280)
                               +|+.+|++ |+++++ +++.++++++|++.++++++... ...+.+.++++|++|||+|+.. +..+++++
T Consensus       173 G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l  252 (339)
T cd08239         173 GPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNTAARRLALEAV  252 (339)
T ss_pred             CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHh
Confidence                     88999997 999885 47888999999999998865442 2223445668999999999876 57889999


Q ss_pred             cCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCee--EeccceecchhHHHHHHHHhcC
Q 048785          193 AENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIK--TLIDSKHLLSKAEDAWAKGADG  270 (280)
Q Consensus       193 ~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~--~~~~~~~~~~~~~~a~~~~~~~  270 (280)
                      +++|+++.+|........ ....+..++.++.+... ...++++++++++++|+++  ++++++|+++++++||+.+.++
T Consensus       253 ~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~  330 (339)
T cd08239         253 RPWGRLVLVGEGGELTIE-VSNDLIRKQRTLIGSWY-FSVPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQG  330 (339)
T ss_pred             hcCCEEEEEcCCCCcccC-cHHHHHhCCCEEEEEec-CCHHHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcC
Confidence            999999999854432211 12345567888887653 4567899999999999986  5788999999999999999887


Q ss_pred             CCcCcEEEeC
Q 048785          271 HATGKIILEP  280 (280)
Q Consensus       271 ~~~gkvvi~~  280 (280)
                      . .||+|+++
T Consensus       331 ~-~gKvvi~~  339 (339)
T cd08239         331 E-SGKVVFVF  339 (339)
T ss_pred             C-ceEEEEeC
Confidence            5 68999864

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-40  Score=282.53  Aligned_cols=271  Identities=15%  Similarity=0.177  Sum_probs=214.4

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      +++|.| ++++||+||+.++|||++|+.++++...+.....+|.++|||++|+|+++  +++.|++||+|+...      
T Consensus        19 ~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~~~vGdrV~~~~~~~cg~   95 (343)
T PRK09880         19 TEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSGLKEGQTVAINPSKPCGH   95 (343)
T ss_pred             EecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCccCCCCCEEEECCCCCCcC
Confidence            577776 68899999999999999999987532211112357899999999999999  788999999998531      


Q ss_pred             ------------------c-----CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh-------
Q 048785           76 ------------------N-----HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-------  125 (280)
Q Consensus        76 ------------------~-----~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-------  125 (280)
                                        +     ...+|+|+||+++|++.++++|+++++++++ +..++.+||+++.+...       
T Consensus        96 c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa-~~~~~~~a~~al~~~~~~~g~~Vl  174 (343)
T PRK09880         96 CKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMA-FAEPLAVAIHAAHQAGDLQGKRVF  174 (343)
T ss_pred             ChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCCHHHHH-hhcHHHHHHHHHHhcCCCCCCEEE
Confidence                              1     0236999999999999999999999987665 44455699999865321       


Q ss_pred             -------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCC-Cccccc
Q 048785          126 -------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGI-PWSTFE  189 (280)
Q Consensus       126 -------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~  189 (280)
                                   +|+.+|+ +|+++++ ++++++++++|+++++++++.+........ +++|++|||+|++ .+..++
T Consensus       175 V~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~-g~~D~vid~~G~~~~~~~~~  253 (343)
T PRK09880        175 VSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEK-GYFDVSFEVSGHPSSINTCL  253 (343)
T ss_pred             EECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccC-CCCCEEEECCCCHHHHHHHH
Confidence                         8899999 7888885 589999999999999998765522222222 3699999999985 588999


Q ss_pred             ccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeE--eccceecchhHHHHHHHH
Q 048785          190 PNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT--LIDSKHLLSKAEDAWAKG  267 (280)
Q Consensus       190 ~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~--~~~~~~~~~~~~~a~~~~  267 (280)
                      ++++++|+++.+|.... ...++...+..+++++.+...  ..++++++++++++|++++  .++++|+++|+++||+.+
T Consensus       254 ~~l~~~G~iv~~G~~~~-~~~~~~~~~~~k~~~i~g~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~  330 (343)
T PRK09880        254 EVTRAKGVMVQVGMGGA-PPEFPMMTLIVKEISLKGSFR--FTEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFA  330 (343)
T ss_pred             HHhhcCCEEEEEccCCC-CCccCHHHHHhCCcEEEEEee--ccccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHH
Confidence            99999999999985432 223445556677888887654  3567899999999999975  778999999999999999


Q ss_pred             hcCCCcCcEEEeC
Q 048785          268 ADGHATGKIILEP  280 (280)
Q Consensus       268 ~~~~~~gkvvi~~  280 (280)
                      .++...||+++.+
T Consensus       331 ~~~~~~gKvvl~~  343 (343)
T PRK09880        331 GDKTQAAKVQLVF  343 (343)
T ss_pred             hcCCCceEEEEeC
Confidence            9888789999874

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=2.3e-40  Score=283.66  Aligned_cols=270  Identities=20%  Similarity=0.230  Sum_probs=219.8

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe-----e-
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI-----L-   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~-----~-   75 (280)
                      .+++.|.|+++||+||+.++|||++|+....|....   ..+|.++|||++|+|+++|++++++++||+|+..     + 
T Consensus        22 ~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~---~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV~~~~~~~~cg   98 (375)
T PLN02178         22 FHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGF---SRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQ   98 (375)
T ss_pred             EeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCC---CCCCcccCceeeEEEEEECCCCCccCCCCEEEEcCccCCCC
Confidence            367788899999999999999999999998886531   2467899999999999999999999999999742     1 


Q ss_pred             --------------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhh-----
Q 048785           76 --------------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA-----  124 (280)
Q Consensus        76 --------------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~-----  124 (280)
                                                +....|+|+||+.+|++.++++|+++++++++++++++.|||+++....     
T Consensus        99 ~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~~  178 (375)
T PLN02178         99 SCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKES  178 (375)
T ss_pred             CChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhhccchHHHHHHHHhCCCCCC
Confidence                                      1112689999999999999999999999999999999999999885431     


Q ss_pred             h-----------------hhhhCCCEEEEEec-CC-cHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCC-C
Q 048785          125 G-----------------LAKLGNSHVTATCG-AR-NIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGI-P  184 (280)
Q Consensus       125 ~-----------------la~~~G~~Vi~~~~-~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~  184 (280)
                      +                 +|+.+|++|+++++ ++ +.+.++++|+++++++++.. .....+ + ++|++|||+|++ .
T Consensus       179 g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~-~v~~~~-~-~~D~vid~~G~~~~  255 (375)
T PLN02178        179 GKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQ-KMKEAV-G-TMDFIIDTVSAEHA  255 (375)
T ss_pred             CCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHH-HHHHhh-C-CCcEEEECCCcHHH
Confidence            1                 88999999998885 33 46788899999999875431 122222 2 699999999987 5


Q ss_pred             cccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHH
Q 048785          185 WSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAW  264 (280)
Q Consensus       185 ~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~  264 (280)
                      +..++++++++|+++.+|.... ...++...+.+++.++.+... ...+++.++++++++|++++.+ ++|+|+++++||
T Consensus       256 ~~~~~~~l~~~G~iv~vG~~~~-~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~g~i~~~i-~~~~l~~~~~A~  332 (375)
T PLN02178        256 LLPLFSLLKVSGKLVALGLPEK-PLDLPIFPLVLGRKMVGGSQI-GGMKETQEMLEFCAKHKIVSDI-ELIKMSDINSAM  332 (375)
T ss_pred             HHHHHHhhcCCCEEEEEccCCC-CCccCHHHHHhCCeEEEEeCc-cCHHHHHHHHHHHHhCCCcccE-EEEeHHHHHHHH
Confidence            7899999999999999985432 233444556667888877653 4567899999999999999877 579999999999


Q ss_pred             HHHhcCCCcCcEEEeC
Q 048785          265 AKGADGHATGKIILEP  280 (280)
Q Consensus       265 ~~~~~~~~~gkvvi~~  280 (280)
                      +.+.+++..||+++++
T Consensus       333 ~~~~~~~~~gkvvi~~  348 (375)
T PLN02178        333 DRLAKSDVRYRFVIDV  348 (375)
T ss_pred             HHHHcCCCceEEEEEe
Confidence            9999998889999864

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=2.9e-40  Score=282.16  Aligned_cols=270  Identities=19%  Similarity=0.236  Sum_probs=216.1

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      .+++.|.++++||+||+.++|||++|+..+.|..+.   ..+|.++|||++|+|+++|++++.+++||+|+...      
T Consensus        28 ~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~---~~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg  104 (360)
T PLN02586         28 FHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGF---TRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCK  104 (360)
T ss_pred             EeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCC---CCCCccCCcceeEEEEEECCCCCccCCCCEEEEccccCcCC
Confidence            357788899999999999999999999988876531   25688999999999999999999999999997421      


Q ss_pred             --------------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----
Q 048785           76 --------------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----  125 (280)
Q Consensus        76 --------------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----  125 (280)
                                                +...+|+|+||+.+|.+.++++|+++++++++++++++.|||+++.....    
T Consensus       105 ~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g  184 (360)
T PLN02586        105 SCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPG  184 (360)
T ss_pred             CCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCC
Confidence                                      11136999999999999999999999999999999999999999854321    


Q ss_pred             -----------------hhhhCCCEEEEEec-CCc-HHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCC-Cc
Q 048785          126 -----------------LAKLGNSHVTATCG-ARN-IEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGI-PW  185 (280)
Q Consensus       126 -----------------la~~~G~~Vi~~~~-~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~  185 (280)
                                       +|+.+|++|++++. +++ .+.++++|+++++++++.. .....+ + ++|++|||+|+. .+
T Consensus       185 ~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~-~~~~~~-~-~~D~vid~~g~~~~~  261 (360)
T PLN02586        185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPE-KMKAAI-G-TMDYIIDTVSAVHAL  261 (360)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHH-HHHhhc-C-CCCEEEECCCCHHHH
Confidence                             88999999888774 444 4566789999999865532 122222 2 599999999975 58


Q ss_pred             ccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHH
Q 048785          186 STFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWA  265 (280)
Q Consensus       186 ~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~  265 (280)
                      ..++++++++|+++.+|.... ...++...+..++..+.+.. ....++++++++++++|++++.+ ++|+|+|+++||+
T Consensus       262 ~~~~~~l~~~G~iv~vG~~~~-~~~~~~~~~~~~~~~i~g~~-~~~~~~~~~~~~li~~g~i~~~~-~~~~l~~~~~A~~  338 (360)
T PLN02586        262 GPLLGLLKVNGKLITLGLPEK-PLELPIFPLVLGRKLVGGSD-IGGIKETQEMLDFCAKHNITADI-ELIRMDEINTAME  338 (360)
T ss_pred             HHHHHHhcCCcEEEEeCCCCC-CCccCHHHHHhCCeEEEEcC-cCCHHHHHHHHHHHHhCCCCCcE-EEEeHHHHHHHHH
Confidence            889999999999999985432 22333444455666666554 34567899999999999998766 5899999999999


Q ss_pred             HHhcCCCcCcEEEeC
Q 048785          266 KGADGHATGKIILEP  280 (280)
Q Consensus       266 ~~~~~~~~gkvvi~~  280 (280)
                      .+.+++..||+++++
T Consensus       339 ~~~~~~~~gkvvi~~  353 (360)
T PLN02586        339 RLAKSDVRYRFVIDV  353 (360)
T ss_pred             HHHcCCCcEEEEEEc
Confidence            999998889999874

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=3.5e-40  Score=278.60  Aligned_cols=272  Identities=24%  Similarity=0.238  Sum_probs=221.7

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCC-CCCCCEEEEeecCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKN-FKAGYNVVAILNHFSG   80 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~-~~~Gd~V~~~~~~~~~   80 (280)
                      +++|.|.|+++||+||+.++++|++|+....|..+.  ...+|.++|||++|+|+++|++++. +++||+|++..+  .+
T Consensus        21 ~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~--~~~~p~v~G~e~~G~V~~vG~~v~~~~~vGd~V~~~~~--~~   96 (324)
T cd08291          21 PEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGS--TKALPVPPGFEGSGTVVAAGGGPLAQSLIGKRVAFLAG--SY   96 (324)
T ss_pred             cccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCC--CCCCCcCCCcceEEEEEEECCCccccCCCCCEEEecCC--CC
Confidence            578889999999999999999999999988887542  1246789999999999999999996 999999998642  14


Q ss_pred             CcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEe
Q 048785           81 GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATC  138 (280)
Q Consensus        81 g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~  138 (280)
                      |+|++|+.+|++.++++|+++++++++++++.++|||.++. ...                      +|+.+|++|++++
T Consensus        97 g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~-~~~~~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~  175 (324)
T cd08291          97 GTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGMLE-TAREEGAKAVVHTAAASALGRMLVRLCKADGIKVINIV  175 (324)
T ss_pred             CcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHHH-hhccCCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEe
Confidence            99999999999999999999999999998888889986552 221                      8899999999988


Q ss_pred             c-CCcHHHHHhcCCCeeecCCCCCc--ccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhH-HHHHh
Q 048785          139 G-ARNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAML-TFAWQ  214 (280)
Q Consensus       139 ~-~~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~-~~~~~  214 (280)
                      + +++.+.++++|++++++++..++  ...+.+.++++|++|||+|+......+++++++|+++.+|..+.... .++..
T Consensus       176 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  255 (324)
T cd08291         176 RRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVGGGLTGQILLAMPYGSTLYVYGYLSGKLDEPIDPV  255 (324)
T ss_pred             CCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHhhCCCCEEEEEEecCCCCcccCCHH
Confidence            5 47889999999999999876552  23344566789999999999888888999999999999985432211 12233


Q ss_pred             hhhccceeeEEEEEc-----CCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEe
Q 048785          215 KLTFSKKQLVPLLVI-----PKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILE  279 (280)
Q Consensus       215 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  279 (280)
                      .+..++.++.+....     ...+.+++++++++ +.+++.++++|+|+++++||+.+.++...||+++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~~  324 (324)
T cd08291         256 DLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-TELKTTFASRYPLALTLEAIAFYSKNMSTGKKLLI  324 (324)
T ss_pred             HHhhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-CccccceeeEEcHHHHHHHHHHHHhCCCCCeEEeC
Confidence            345566666665432     13567888999998 99999999999999999999999999999999873

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=6.4e-40  Score=276.87  Aligned_cols=265  Identities=21%  Similarity=0.234  Sum_probs=217.7

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-----   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----   75 (280)
                      ++++|.|.|+++||+||+.+++||++|+....|..+.   ..+|.++|||++|+|+++|++++.+++||+|+...     
T Consensus        17 ~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~---~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c   93 (329)
T TIGR02822        17 FVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPV---HRPRVTPGHEVVGEVAGRGADAGGFAVGDRVGIAWLRRTC   93 (329)
T ss_pred             EEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCC---CCCCccCCcceEEEEEEECCCCcccCCCCEEEEcCccCcC
Confidence            3678999999999999999999999999998887542   13468999999999999999999999999997421     


Q ss_pred             --------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------
Q 048785           76 --------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------  125 (280)
Q Consensus        76 --------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------  125 (280)
                                          +...+|+|+||+.+|...++++|+++++++++.+++.++|||+++.. ++          
T Consensus        94 ~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~~-~~~~~g~~VlV~  172 (329)
T TIGR02822        94 GVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALLR-ASLPPGGRLGLY  172 (329)
T ss_pred             CCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHHHh-cCCCCCCEEEEE
Confidence                                11236999999999999999999999999999999999999999854 32          


Q ss_pred             -----------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCC-CCcccccccc
Q 048785          126 -----------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARG-IPWSTFEPNL  192 (280)
Q Consensus       126 -----------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l  192 (280)
                                 +|+.+|++|+++++ ++++++++++|+++++++.+..        ..++|.++++.+. ..+..+++++
T Consensus       173 G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~--------~~~~d~~i~~~~~~~~~~~~~~~l  244 (329)
T TIGR02822       173 GFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTP--------PEPLDAAILFAPAGGLVPPALEAL  244 (329)
T ss_pred             cCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccC--------cccceEEEECCCcHHHHHHHHHhh
Confidence                       88899999998885 5889999999999998754221        2358999988875 3488999999


Q ss_pred             cCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCC
Q 048785          193 AENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHA  272 (280)
Q Consensus       193 ~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~  272 (280)
                      +++|+++.+|........++...+.+++.++.+.. ...++++.++++++++|++++ ++++|+|+|+++||+.+.+++.
T Consensus       245 ~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~-~~~~~~~~~~~~l~~~g~i~~-i~~~~~l~~~~~A~~~~~~~~~  322 (329)
T TIGR02822       245 DRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVT-SNTRADAREFLELAAQHGVRV-TTHTYPLSEADRALRDLKAGRF  322 (329)
T ss_pred             CCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEee-cCCHHHHHHHHHHHHhCCCee-EEEEEeHHHHHHHHHHHHcCCC
Confidence            99999999986432222233444556777777654 345678899999999999975 5789999999999999999999


Q ss_pred             cCcEEEe
Q 048785          273 TGKIILE  279 (280)
Q Consensus       273 ~gkvvi~  279 (280)
                      .||+|+.
T Consensus       323 ~Gkvvl~  329 (329)
T TIGR02822       323 DGAAVLV  329 (329)
T ss_pred             ceEEEeC
Confidence            9999873

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=4.1e-40  Score=281.61  Aligned_cols=274  Identities=20%  Similarity=0.250  Sum_probs=222.6

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN----   76 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~----   76 (280)
                      ++|+|.|+|+++||+||+.++++|++|+....|..+    ..+|.++|||++|+|+++|++++++++||+|++...    
T Consensus        16 ~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~----~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg   91 (358)
T TIGR03451        16 LETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIN----DEFPFLLGHEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCG   91 (358)
T ss_pred             EEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCcc----ccCCcccccceEEEEEEeCCCCcccCCCCEEEEccCCCCC
Confidence            357899999999999999999999999999888653    256889999999999999999999999999986210    


Q ss_pred             ----------------------------C-----CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhh
Q 048785           77 ----------------------------H-----FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS  123 (280)
Q Consensus        77 ----------------------------~-----~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~  123 (280)
                                                  .     ...|+|+||+.+|.+.++++|+++++++++++++++.+||+++...
T Consensus        92 ~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~~~~~  171 (358)
T TIGR03451        92 QCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNT  171 (358)
T ss_pred             CChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCCCCChhHhhhhcccchhhHHHHHhc
Confidence                                        0     1258999999999999999999999999999998888999887554


Q ss_pred             hh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEE
Q 048785          124 AG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIH  178 (280)
Q Consensus       124 ~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d  178 (280)
                      .+                     +|+.+|+ +|+++++ +++.++++++|+++++++++.+  ......+.++++|++||
T Consensus       172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid  251 (358)
T TIGR03451       172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVID  251 (358)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEE
Confidence            32                     8899999 5988885 4889999999999999887655  22334456678999999


Q ss_pred             CCCCC-CcccccccccCCcEEEEeCCCchh-hHHHHHhhhhccceeeEEEEEc--CCHHHHHHHHHHHHCCCeeE--ecc
Q 048785          179 CARGI-PWSTFEPNLAENGKVIDLTPTPSA-MLTFAWQKLTFSKKQLVPLLVI--PKGENLVFLVKLLKEGKIKT--LID  252 (280)
Q Consensus       179 ~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~g~~~~--~~~  252 (280)
                      |+|++ .+..++++++++|+++.+|..... ...++...+..++.++.+....  ...++++++++++++|++++  +++
T Consensus       252 ~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~  331 (358)
T TIGR03451       252 AVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVT  331 (358)
T ss_pred             CCCCHHHHHHHHHHhccCCEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCCcHHHHHHHHHHHHcCCCCchheEE
Confidence            99974 588899999999999999865331 2334444555677777765432  24678999999999999964  688


Q ss_pred             ceecchhHHHHHHHHhcCCCcCcEEEe
Q 048785          253 SKHLLSKAEDAWAKGADGHATGKIILE  279 (280)
Q Consensus       253 ~~~~~~~~~~a~~~~~~~~~~gkvvi~  279 (280)
                      ++|+++|+++||+.+.+++.. |+++.
T Consensus       332 ~~~~l~~~~~A~~~~~~~~~~-k~~~~  357 (358)
T TIGR03451       332 ERIGLDDVEEAFDKMHAGDVL-RSVVE  357 (358)
T ss_pred             EEecHHHHHHHHHHHhCCCcc-eeEEe
Confidence            999999999999999888765 77765

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=6.1e-41  Score=268.50  Aligned_cols=273  Identities=18%  Similarity=0.222  Sum_probs=224.8

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-----   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----   75 (280)
                      ++|+.+++|++|||+||+.++|+|++|...++|..+.    .+|.++|||.+|+|++||+.|+++++||+|+..+     
T Consensus        17 i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~----~~P~vLGHEgAGiVe~VG~gVt~vkpGDhVI~~f~p~CG   92 (366)
T COG1062          17 IEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPE----GFPAVLGHEGAGIVEAVGEGVTSVKPGDHVILLFTPECG   92 (366)
T ss_pred             EEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCC----CCceecccccccEEEEecCCccccCCCCEEEEcccCCCC
Confidence            3678899999999999999999999999999999873    5899999999999999999999999999997630     


Q ss_pred             ----------------------------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHH
Q 048785           76 ----------------------------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLT  115 (280)
Q Consensus        76 ----------------------------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~  115 (280)
                                                              .+..-++|++|..+++.++++++++..++.++.+.|+..|
T Consensus        93 ~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p~~~a~llGCgV~T  172 (366)
T COG1062          93 QCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTT  172 (366)
T ss_pred             CCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCCCCccceEEEeeeecc
Confidence                                                    0112259999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCC--cccccCCCC
Q 048785          116 ALEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPD--GAALKSPSG  170 (280)
Q Consensus       116 a~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~  170 (280)
                      .+.+..+.++                     =|+..|+ ++|+++- ++|++++++||+++++|.++..  .+.+....+
T Consensus       173 G~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~  252 (366)
T COG1062         173 GIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTD  252 (366)
T ss_pred             ChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcC
Confidence            9998877766                     5667788 9999994 6999999999999999998763  233333455


Q ss_pred             CcccEEEECCCCCC-cccccccccCCcEEEEeCCCc-hhhHHHHHhhhhccceeeEEEEEc--CCHHHHHHHHHHHHCCC
Q 048785          171 RKYDAVIHCARGIP-WSTFEPNLAENGKVIDLTPTP-SAMLTFAWQKLTFSKKQLVPLLVI--PKGENLVFLVKLLKEGK  246 (280)
Q Consensus       171 ~~~d~v~d~~g~~~-~~~~~~~l~~~g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~g~  246 (280)
                      +++|++|||+|+.. +++++.++.++|+.+.+|... ....+...-++. .+..+.+....  ..+.++++++++..+|+
T Consensus       253 gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv-~gr~~~Gs~~G~~~p~~diP~lv~~y~~Gk  331 (366)
T COG1062         253 GGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLV-TGRVWKGSAFGGARPRSDIPRLVDLYMAGK  331 (366)
T ss_pred             CCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHee-ccceEEEEeecCCccccchhHHHHHHHcCC
Confidence            59999999999965 889999999999999998443 222222222222 23666666653  35789999999999999


Q ss_pred             e--eEeccceecchhHHHHHHHHhcCCCcCcEEEe
Q 048785          247 I--KTLIDSKHLLSKAEDAWAKGADGHATGKIILE  279 (280)
Q Consensus       247 ~--~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  279 (280)
                      +  .++++++++|+|+++||+.|.+++.. |.||.
T Consensus       332 l~~d~lvt~~~~Le~INeaf~~m~~G~~I-R~Vi~  365 (366)
T COG1062         332 LPLDRLVTHTIPLEDINEAFDLMHEGKSI-RSVIR  365 (366)
T ss_pred             CchhHHhhccccHHHHHHHHHHHhCCcee-eEEec
Confidence            7  47999999999999999999999876 55544

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=4.8e-39  Score=276.24  Aligned_cols=270  Identities=18%  Similarity=0.197  Sum_probs=217.8

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH----   77 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~----   77 (280)
                      +|+|.|.++++||+||+.++|||++|+..+.|..      .+|.++|||++|+|+++|++++++++||+|++....    
T Consensus        28 ~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~------~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~  101 (378)
T PLN02827         28 EEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA------LFPRIFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGS  101 (378)
T ss_pred             EEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC------CCCeeecccceEEEEEcCCCCcccCCCCEEEEecCCCCCC
Confidence            5789999999999999999999999999877642      357899999999999999999999999999875210    


Q ss_pred             -----------------------------------------CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHH
Q 048785           78 -----------------------------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTA  116 (280)
Q Consensus        78 -----------------------------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a  116 (280)
                                                               ...|+|+||+.+|++.++++|+++++++++++++++.++
T Consensus       102 C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~~l~~~~aa~l~~~~~~a  181 (378)
T PLN02827        102 CRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAG  181 (378)
T ss_pred             ChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEECCCCCCHHHhhhhcchhHhh
Confidence                                                     013899999999999999999999999999998888888


Q ss_pred             HHHHHhhhh---------------------hhhhCCC-EEEEEe-cCCcHHHHHhcCCCeeecCCCC--C-cccc-cCCC
Q 048785          117 LEALTQSAG---------------------LAKLGNS-HVTATC-GARNIEFVKSLGADEVLDYKTP--D-GAAL-KSPS  169 (280)
Q Consensus       117 ~~~l~~~~~---------------------la~~~G~-~Vi~~~-~~~~~~~~~~~g~~~v~~~~~~--~-~~~~-~~~~  169 (280)
                      |+++...++                     +|+.+|+ .|++++ ++++.++++++|+++++++++.  + ...+ +.+.
T Consensus       182 ~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~  261 (378)
T PLN02827        182 LGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTG  261 (378)
T ss_pred             HHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhC
Confidence            887654332                     8889999 577877 4588999999999999988753  2 2222 2333


Q ss_pred             CCcccEEEECCCCC-CcccccccccCC-cEEEEeCCCchhhHHHHH-hhhhccceeeEEEEEc--CCHHHHHHHHHHHHC
Q 048785          170 GRKYDAVIHCARGI-PWSTFEPNLAEN-GKVIDLTPTPSAMLTFAW-QKLTFSKKQLVPLLVI--PKGENLVFLVKLLKE  244 (280)
Q Consensus       170 ~~~~d~v~d~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~  244 (280)
                      + ++|++|||+|.. .+..+++.++++ |+++.+|..... ..+.. ..+.+++.++.+....  .+..++.++++++++
T Consensus       262 ~-g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~  339 (378)
T PLN02827        262 G-GADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAK-PEVSAHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMN  339 (378)
T ss_pred             C-CCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCC-ccccccHHHHhcCceEEeeecCCCchhhhHHHHHHHHHc
Confidence            3 899999999986 588999999998 999999865432 12211 3455678888876542  235678999999999


Q ss_pred             CCeeE--eccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          245 GKIKT--LIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       245 g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      |++++  +++++|+|+++++|++.+.+++. .|+||.+
T Consensus       340 g~i~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~vi~~  376 (378)
T PLN02827        340 KEIMIDEFITHNLSFDEINKAFELMREGKC-LRCVIHM  376 (378)
T ss_pred             CCCChHHheEEEecHHHHHHHHHHHHCCCc-eEEEEEe
Confidence            99987  88999999999999999998876 5888864

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=1.1e-38  Score=273.43  Aligned_cols=273  Identities=19%  Similarity=0.207  Sum_probs=214.1

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH----   77 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~----   77 (280)
                      +++|.|+|+++||+||+.++|||++|+....|..+.   ..+|.++|||++|+|+++|++++.+++||+|++....    
T Consensus        17 ~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~---~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~   93 (368)
T TIGR02818        17 EEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPE---GVFPVILGHEGAGIVEAVGEGVTSVKVGDHVIPLYTAECGE   93 (368)
T ss_pred             EEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCC---CCCCeeeccccEEEEEEECCCCccCCCCCEEEEcCCCCCCC
Confidence            578889999999999999999999999998887542   2578999999999999999999999999999864210    


Q ss_pred             -----------------------------------------CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHH
Q 048785           78 -----------------------------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTA  116 (280)
Q Consensus        78 -----------------------------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a  116 (280)
                                                               ...|+|+||+.+|.+.++++|+++++++++++++++.||
T Consensus        94 C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta  173 (368)
T TIGR02818        94 CKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTG  173 (368)
T ss_pred             ChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEECCCCCCHHHhhhhcchhHHH
Confidence                                                     013699999999999999999999999999999999999


Q ss_pred             HHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCC---cc-cccCCC
Q 048785          117 LEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPD---GA-ALKSPS  169 (280)
Q Consensus       117 ~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~---~~-~~~~~~  169 (280)
                      |+++.+.++                     +|+.+|+ +|+++++ +++++.++++|++.++++++..   .. ..+.+.
T Consensus       174 ~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~  253 (368)
T TIGR02818       174 IGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITD  253 (368)
T ss_pred             HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhC
Confidence            999855432                     8899999 8999885 5889999999999999876422   12 223334


Q ss_pred             CCcccEEEECCCCC-CcccccccccCC-cEEEEeCCCch-hhHHHHHhhhhccceeeEEEEEc--CCHHHHHHHHHHHHC
Q 048785          170 GRKYDAVIHCARGI-PWSTFEPNLAEN-GKVIDLTPTPS-AMLTFAWQKLTFSKKQLVPLLVI--PKGENLVFLVKLLKE  244 (280)
Q Consensus       170 ~~~~d~v~d~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~  244 (280)
                      + ++|++|||+|++ .+..++++++++ |+++.+|.... ....+....+. .+..+.+....  ..+.++.++++++++
T Consensus       254 ~-g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~  331 (368)
T TIGR02818       254 G-GVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLV-TGRVWRGSAFGGVKGRTELPGIVEQYMK  331 (368)
T ss_pred             C-CCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHh-ccceEEEeeccCCCcHHHHHHHHHHHHC
Confidence            3 899999999975 478889999886 99999985431 11211112222 22334443321  235678999999999


Q ss_pred             CCee--EeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          245 GKIK--TLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       245 g~~~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      |+++  ++++++|+|+++++||+.+.++.. .|+++++
T Consensus       332 g~i~~~~~it~~~~l~~~~~A~~~~~~~~~-~k~~v~~  368 (368)
T TIGR02818       332 GEIALDDFVTHTMPLEDINEAFDLMHEGKS-IRTVIHY  368 (368)
T ss_pred             CCCCchhheeEEecHHHHHHHHHHHhCCCc-eeEEeeC
Confidence            9875  578999999999999999987765 5998864

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=1.2e-38  Score=272.25  Aligned_cols=271  Identities=21%  Similarity=0.197  Sum_probs=206.1

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC---
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH---   77 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~---   77 (280)
                      ++++|.|+|+++||+||+.++|||++|++.++|..+......+|.++|||++|+|+++|++ +.|++||+|++....   
T Consensus        15 ~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~vGdrV~~~~~~~cg   93 (355)
T cd08230          15 VVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPG   93 (355)
T ss_pred             EEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCCCCCEEEeccccCCC
Confidence            3578999999999999999999999999999887532112246789999999999999999 999999999864210   


Q ss_pred             ------------------------CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHh------h----
Q 048785           78 ------------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQ------S----  123 (280)
Q Consensus        78 ------------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~------~----  123 (280)
                                              ..+|+|+||+.+|.+.++++|++++ ++ +++..++.+++.++..      .    
T Consensus        94 ~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~-~~-a~~~~p~~~~~~a~~~~~~~~~~~~~~  171 (355)
T cd08230          94 KCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA-DV-GVLLEPLSVVEKAIEQAEAVQKRLPTW  171 (355)
T ss_pred             cChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC-cc-eeecchHHHHHHHHHHHhhhhhhcccC
Confidence                                    1358999999999999999999999 43 3333343344433321      1    


Q ss_pred             hh-----------------hhhhCCCEEEEEec----CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCC
Q 048785          124 AG-----------------LAKLGNSHVTATCG----ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARG  182 (280)
Q Consensus       124 ~~-----------------la~~~G~~Vi~~~~----~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~  182 (280)
                      .+                 +|+.+|++|+++++    +++.++++++|++. +++.+......  ....++|++|||+|+
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~-v~~~~~~~~~~--~~~~~~d~vid~~g~  248 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY-VNSSKTPVAEV--KLVGEFDLIIEATGV  248 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE-ecCCccchhhh--hhcCCCCEEEECcCC
Confidence            11                 88999999999885    36888999999986 45544332111  123579999999998


Q ss_pred             C-CcccccccccCCcEEEEeCCCch-hhHHHH----HhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCC------eeEe
Q 048785          183 I-PWSTFEPNLAENGKVIDLTPTPS-AMLTFA----WQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGK------IKTL  250 (280)
Q Consensus       183 ~-~~~~~~~~l~~~g~~v~~g~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~------~~~~  250 (280)
                      + .+..++++++++|+++.+|.... ....+.    ...+.++++++.+.. ..+.++++++++++.++.      +++.
T Consensus       249 ~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~  327 (355)
T cd08230         249 PPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSV-NANKRHFEQAVEDLAQWKYRWPGVLERL  327 (355)
T ss_pred             HHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEec-CCchhhHHHHHHHHHhcccccccchHHh
Confidence            5 47899999999999999985443 222222    345667888888865 345678899999999876      5677


Q ss_pred             ccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          251 IDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       251 ~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ++++|+++++++||+.+.++.  .|+++++
T Consensus       328 i~~~~~l~~~~~a~~~~~~~~--~K~v~~~  355 (355)
T cd08230         328 ITRRVPLEEFAEALTEKPDGE--IKVVIEW  355 (355)
T ss_pred             eeeeecHHHHHHHHHhcccCC--eEEEeeC
Confidence            889999999999999887654  5998864

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=2.3e-38  Score=270.39  Aligned_cols=270  Identities=20%  Similarity=0.287  Sum_probs=218.5

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      ++++.|+++++||+||+.+++||++|+..+.|....   ..+|.++|||++|+|+++|++++.+++||+|+...      
T Consensus        25 ~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~---~~~p~i~G~E~~G~Vv~vG~~v~~~~~Gd~V~~~~~~~~c~  101 (357)
T PLN02514         25 YTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGM---SNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGVIVGCCG  101 (357)
T ss_pred             EeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCc---CCCCccCCceeeEEEEEECCCcccccCCCEEEEcCccccCC
Confidence            578899999999999999999999999988876531   24678999999999999999999999999997411      


Q ss_pred             --------------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----
Q 048785           76 --------------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----  125 (280)
Q Consensus        76 --------------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----  125 (280)
                                                +....|+|+||+.+|.+.++++|+++++++++++++++.|||+++.....    
T Consensus       102 ~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g  181 (357)
T PLN02514        102 ECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSG  181 (357)
T ss_pred             CChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCC
Confidence                                      01135999999999999999999999999999999999999999855321    


Q ss_pred             -----------------hhhhCCCEEEEEecC-CcHHH-HHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCC-Cc
Q 048785          126 -----------------LAKLGNSHVTATCGA-RNIEF-VKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGI-PW  185 (280)
Q Consensus       126 -----------------la~~~G~~Vi~~~~~-~~~~~-~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~  185 (280)
                                       +|+.+|++|+++++. +++.. ++++|++.++++.+.. .....+  .++|++|||+|.. .+
T Consensus       182 ~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~-~~~~~~--~~~D~vid~~g~~~~~  258 (357)
T PLN02514        182 LRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAA-EMQEAA--DSLDYIIDTVPVFHPL  258 (357)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChH-HHHHhc--CCCcEEEECCCchHHH
Confidence                             889999998888854 55544 4679998887654422 122222  3699999999964 58


Q ss_pred             ccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHH
Q 048785          186 STFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWA  265 (280)
Q Consensus       186 ~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~  265 (280)
                      +.++++++++|+++.+|.... ...+....+.+++.++.+... ...++++++++++++|++++.+ ++|+|+++++||+
T Consensus       259 ~~~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~g~l~~~i-~~~~l~~~~~A~~  335 (357)
T PLN02514        259 EPYLSLLKLDGKLILMGVINT-PLQFVTPMLMLGRKVITGSFI-GSMKETEEMLEFCKEKGLTSMI-EVVKMDYVNTAFE  335 (357)
T ss_pred             HHHHHHhccCCEEEEECCCCC-CCcccHHHHhhCCcEEEEEec-CCHHHHHHHHHHHHhCCCcCcE-EEEcHHHHHHHHH
Confidence            889999999999999986543 233445556678888888663 4567899999999999998876 5899999999999


Q ss_pred             HHhcCCCcCcEEEeC
Q 048785          266 KGADGHATGKIILEP  280 (280)
Q Consensus       266 ~~~~~~~~gkvvi~~  280 (280)
                      .+.++...||+++.+
T Consensus       336 ~~~~~~~~gk~v~~~  350 (357)
T PLN02514        336 RLEKNDVRYRFVVDV  350 (357)
T ss_pred             HHHcCCCceeEEEEc
Confidence            999998889999864

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=1.6e-38  Score=273.60  Aligned_cols=274  Identities=21%  Similarity=0.253  Sum_probs=217.6

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH----   77 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~----   77 (280)
                      +|+|.|.|+++||+||+.++|||++|+..+.|..+.  ...+|.++|||++|+|+++|++++.+++||+|++....    
T Consensus        26 ~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~--~~~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~  103 (381)
T PLN02740         26 EEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEA--QRAYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGD  103 (381)
T ss_pred             EEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcc--cCCCCccccccceEEEEEeCCCCCcCCCCCEEEecCCCCCCC
Confidence            578899999999999999999999999998887531  12568999999999999999999999999999864210    


Q ss_pred             --------------------------------------------CCCCcceeEEeecccccccCCCCCChhhhcccchhH
Q 048785           78 --------------------------------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAG  113 (280)
Q Consensus        78 --------------------------------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~  113 (280)
                                                                  ...|+|+||+.+|.+.++++|+++++++++++++++
T Consensus       104 C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~  183 (381)
T PLN02740        104 CRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGV  183 (381)
T ss_pred             ChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHeEECCCCCCHHHhhhhcccc
Confidence                                                        015899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCC---cc-ccc
Q 048785          114 LTALEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPD---GA-ALK  166 (280)
Q Consensus       114 ~~a~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~---~~-~~~  166 (280)
                      .|||+++...++                     +|+.+|+ +|+++++ +++.+.++++|+++++++++..   .+ ...
T Consensus       184 ~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~  263 (381)
T PLN02740        184 STGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIRE  263 (381)
T ss_pred             hhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHH
Confidence            999998755433                     8889999 7998885 5899999999999999876532   12 223


Q ss_pred             CCCCCcccEEEECCCCC-CcccccccccCC-cEEEEeCCCchh-hHHHHHhhhhccceeeEEEEEc--CCHHHHHHHHHH
Q 048785          167 SPSGRKYDAVIHCARGI-PWSTFEPNLAEN-GKVIDLTPTPSA-MLTFAWQKLTFSKKQLVPLLVI--PKGENLVFLVKL  241 (280)
Q Consensus       167 ~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  241 (280)
                      .+.+ ++|++|||+|+. .+..++++++++ |+++.+|..... ...+....+ +++.++.+....  ....++++++++
T Consensus       264 ~~~~-g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~  341 (381)
T PLN02740        264 MTGG-GVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMEL-FDGRSITGSVFGDFKGKSQLPNLAKQ  341 (381)
T ss_pred             HhCC-CCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHH-hcCCeEEEEecCCCCcHHHHHHHHHH
Confidence            3334 899999999985 588899999996 999999855432 112222212 356677765532  235678999999


Q ss_pred             HHCCCee--EeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          242 LKEGKIK--TLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       242 i~~g~~~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      +.+|+++  ++++++|+|+|+++||+.+.++.. .|++|+.
T Consensus       342 ~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~-~k~~~~~  381 (381)
T PLN02740        342 CMQGVVNLDGFITHELPFEKINEAFQLLEDGKA-LRCLLHL  381 (381)
T ss_pred             HHcCCCChHHheeEEecHHHHHHHHHHHHCCCc-eeEEEeC
Confidence            9999885  478899999999999999988866 4998863

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=4.4e-38  Score=269.95  Aligned_cols=272  Identities=19%  Similarity=0.214  Sum_probs=214.2

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH----   77 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~----   77 (280)
                      +++|.|.|+++||+||+.+++||++|+....|..+.   ..+|.++|||++|+|+++|++++++++||+|++....    
T Consensus        18 ~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~---~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~   94 (368)
T cd08300          18 EEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPE---GLFPVILGHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGE   94 (368)
T ss_pred             EEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCcc---CCCCceeccceeEEEEEeCCCCccCCCCCEEEEcCCCCCCC
Confidence            578899999999999999999999999998887542   2578999999999999999999999999999864100    


Q ss_pred             -----------------------------------------CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHH
Q 048785           78 -----------------------------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTA  116 (280)
Q Consensus        78 -----------------------------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a  116 (280)
                                                               ...|+|+||+.++.+.++++|+++++++++++++++.||
T Consensus        95 C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta  174 (368)
T cd08300          95 CKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTG  174 (368)
T ss_pred             ChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCCCCCChhhhhhhccchhhh
Confidence                                                     013689999999999999999999999999999999999


Q ss_pred             HHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCC---cc-cccCCC
Q 048785          117 LEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPD---GA-ALKSPS  169 (280)
Q Consensus       117 ~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~---~~-~~~~~~  169 (280)
                      |+++.+.++                     +|+.+|+ +|+++++ +++.+.++++|+++++++++.+   .. ..+.+.
T Consensus       175 ~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~  254 (368)
T cd08300         175 YGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTD  254 (368)
T ss_pred             HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhC
Confidence            998755432                     8899999 7999985 4788999999999999887642   12 223334


Q ss_pred             CCcccEEEECCCCC-CcccccccccCC-cEEEEeCCCch-hhHHHHHhhhhccceeeEEEEE--cCCHHHHHHHHHHHHC
Q 048785          170 GRKYDAVIHCARGI-PWSTFEPNLAEN-GKVIDLTPTPS-AMLTFAWQKLTFSKKQLVPLLV--IPKGENLVFLVKLLKE  244 (280)
Q Consensus       170 ~~~~d~v~d~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~  244 (280)
                      + ++|++|||+|+. .+..++++++++ |+++.+|.... .........+. .+..+.+...  +...++++++++++.+
T Consensus       255 ~-g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~  332 (368)
T cd08300         255 G-GVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLV-TGRVWKGTAFGGWKSRSQVPKLVEDYMK  332 (368)
T ss_pred             C-CCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHh-hcCeEEEEEecccCcHHHHHHHHHHHHc
Confidence            3 899999999975 588899999886 99999985431 11111111111 2223344332  2356789999999999


Q ss_pred             CCeeE--eccceecchhHHHHHHHHhcCCCcCcEEEe
Q 048785          245 GKIKT--LIDSKHLLSKAEDAWAKGADGHATGKIILE  279 (280)
Q Consensus       245 g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  279 (280)
                      |++++  +++++|+|+++++||+.+.+++. .|++++
T Consensus       333 g~l~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~~~~  368 (368)
T cd08300         333 GKIKVDEFITHTMPLDEINEAFDLMHAGKS-IRTVVK  368 (368)
T ss_pred             CCCChhhceeeeEcHHHHHHHHHHHhCCCC-ceeeeC
Confidence            99874  68899999999999999987765 588875

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=9.5e-38  Score=266.11  Aligned_cols=273  Identities=19%  Similarity=0.221  Sum_probs=218.0

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe------
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI------   74 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~------   74 (280)
                      ++|+|.|.++++||+||+.++++|++|+....+...+  ...+|.++|||++|+|+++|++++.+ +||+|++.      
T Consensus        13 ~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~--~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV~~~~~~~cg   89 (349)
T TIGR03201        13 KTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRT--NHALPLALGHEISGRVIQAGAGAASW-IGKAVIVPAVIPCG   89 (349)
T ss_pred             EEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCc--cCCCCeeccccceEEEEEeCCCcCCC-CCCEEEECCCCCCC
Confidence            3688999999999999999999999999876443321  12568899999999999999999887 99999862      


Q ss_pred             ------------------ecCCCCCcceeEEeecccccccCCC------CCChhhhcccchhHHHHHHHHHhhhh-----
Q 048785           75 ------------------LNHFSGGGLAEFAMVKESLTASRPL------EVSAAEGAGLPLAGLTALEALTQSAG-----  125 (280)
Q Consensus        75 ------------------~~~~~~g~~~~~~~v~~~~~~~~p~------~~~~~~aa~~~~~~~~a~~~l~~~~~-----  125 (280)
                                        .+....|+|+||+.+|.+.++++|+      +++++++++++.++.+||+++.. .+     
T Consensus        90 ~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~~~-~~~~~g~  168 (349)
T TIGR03201        90 ECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAVQ-AGLKKGD  168 (349)
T ss_pred             CChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHHHh-cCCCCCC
Confidence                              1112469999999999999999998      89999999999999999999854 22     


Q ss_pred             ----------------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCCCC----cc-cccCCCCCccc----EEEEC
Q 048785          126 ----------------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPD----GA-ALKSPSGRKYD----AVIHC  179 (280)
Q Consensus       126 ----------------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~----~~-~~~~~~~~~~d----~v~d~  179 (280)
                                      +|+.+|++|+++++ +++.++++++|+++++++.+.+    .+ ..+.+.++++|    .+|||
T Consensus       169 ~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~  248 (349)
T TIGR03201       169 LVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKIFEC  248 (349)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEEEEC
Confidence                            88899999999885 5889999999999999876542    11 22345566776    89999


Q ss_pred             CCCCC-cccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeE--eccceec
Q 048785          180 ARGIP-WSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT--LIDSKHL  256 (280)
Q Consensus       180 ~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~--~~~~~~~  256 (280)
                      +|+.. ++.++++++++|+++.+|..... ..+....+..++.++.+.+ ....++++++++++++|++++  ++ ++|+
T Consensus       249 ~g~~~~~~~~~~~l~~~G~iv~~G~~~~~-~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~i~~g~i~~~~~i-~~~~  325 (349)
T TIGR03201       249 SGSKPGQESALSLLSHGGTLVVVGYTMAK-TEYRLSNLMAFHARALGNW-GCPPDRYPAALDLVLDGKIQLGPFV-ERRP  325 (349)
T ss_pred             CCChHHHHHHHHHHhcCCeEEEECcCCCC-cccCHHHHhhcccEEEEEe-cCCHHHHHHHHHHHHcCCCCcccce-EEec
Confidence            99865 66789999999999999865432 2333344455566666654 235678999999999999864  45 4799


Q ss_pred             chhHHHHHHHHhcCCCcCcEEEeC
Q 048785          257 LSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       257 ~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      |+++++||+.+.+++..+|+++++
T Consensus       326 l~~~~~A~~~~~~~~~~~k~~~~~  349 (349)
T TIGR03201       326 LDQIEHVFAAAHHHKLKRRAILTP  349 (349)
T ss_pred             HHHHHHHHHHHHcCCccceEEecC
Confidence            999999999999999889999864

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=100.00  E-value=5.7e-38  Score=262.78  Aligned_cols=263  Identities=19%  Similarity=0.218  Sum_probs=201.5

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecC-hhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC--
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLN-AFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH--   77 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~-~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~--   77 (280)
                      ++++|.|.|+++||+||+.+++|| ++|+..+.|..+......+|.++|||++|+|+++|+++ .+++||||+.....  
T Consensus        15 ~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~~~vGdrV~~~~~~c~   93 (308)
T TIGR01202        15 LREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-GFRPGDRVFVPGSNCY   93 (308)
T ss_pred             EEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-CCCCCCEEEEeCcccc
Confidence            357889999999999999999996 69999888876432112578999999999999999999 59999999863210  


Q ss_pred             ----CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh-------------------hhhhCCCEE
Q 048785           78 ----FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-------------------LAKLGNSHV  134 (280)
Q Consensus        78 ----~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-------------------la~~~G~~V  134 (280)
                          ...|+|+||+.+|++.++++|++++++. ++++ .+.|||+++.+...                   +|+.+|+++
T Consensus        94 ~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~-~~~~a~~~~~~~~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~  171 (308)
T TIGR01202        94 EDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALLA-LAATARHAVAGAEVKVLPDLIVGHGTLGRLLARLTKAAGGSP  171 (308)
T ss_pred             ccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhhh-HHHHHHHHHHhcccCCCcEEEECCCHHHHHHHHHHHHcCCce
Confidence                1259999999999999999999999865 4444 35799999965211                   889999965


Q ss_pred             EE-EecC-CcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCC-cccccccccCCcEEEEeCCCchhhHHH
Q 048785          135 TA-TCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIP-WSTFEPNLAENGKVIDLTPTPSAMLTF  211 (280)
Q Consensus       135 i~-~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~  211 (280)
                      ++ ++.. ++++.+..   ..++|+++.        .+.++|++|||+|+.. ++.++++++++|+++.+|.... ...+
T Consensus       172 v~~~~~~~~rl~~a~~---~~~i~~~~~--------~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~-~~~~  239 (308)
T TIGR01202       172 PAVWETNPRRRDGATG---YEVLDPEKD--------PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTE-PVNF  239 (308)
T ss_pred             EEEeCCCHHHHHhhhh---ccccChhhc--------cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCC-Cccc
Confidence            54 4433 45544433   345554321        2457999999999864 7899999999999999985432 2334


Q ss_pred             HHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeE--eccceecchhHHHHHHHHhcCCCcCcEEEe
Q 048785          212 AWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT--LIDSKHLLSKAEDAWAKGADGHATGKIILE  279 (280)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  279 (280)
                      +...+..+++++.+.. ....++++++++++++|++++  .++++|+|+|+++||+.+.++...+|++++
T Consensus       240 ~~~~~~~~~~~i~~~~-~~~~~~~~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~  308 (308)
T TIGR01202       240 DFVPAFMKEARLRIAA-EWQPGDLHAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSDPDCLKMILD  308 (308)
T ss_pred             ccchhhhcceEEEEec-ccchhHHHHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence            4455566777776654 335678999999999999864  789999999999999998877777899874

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-37  Score=265.76  Aligned_cols=273  Identities=20%  Similarity=0.218  Sum_probs=214.0

Q ss_pred             CCCCCCCC-CCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-----
Q 048785            2 VHVPVPTP-RKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-----   75 (280)
Q Consensus         2 ~~~~~~~~-~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----   75 (280)
                      +|+|.|.+ +++||+||+.++++|++|+..+.+...    ..+|.++|||++|+|+++|++++++++||+|++..     
T Consensus        15 ~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~----~~~p~i~G~e~~G~V~~vG~~v~~~~vGd~V~~~~~~~c~   90 (347)
T PRK10309         15 AESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA----HYYPITLGHEFSGYVEAVGSGVDDLHPGDAVACVPLLPCF   90 (347)
T ss_pred             EECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC----CCCCcccccceEEEEEEeCCCCCCCCCCCEEEECCCcCCC
Confidence            57888887 589999999999999999975432211    13578999999999999999999999999998742     


Q ss_pred             -------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh-----------
Q 048785           76 -------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-----------  125 (280)
Q Consensus        76 -------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----------  125 (280)
                                         +....|+|+||+.+|.+.++++|+++++++++++. ...++|+++.. ..           
T Consensus        91 ~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~~~~~-~~~~~g~~vlV~G  168 (347)
T PRK10309         91 TCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAFHL-AQGCEGKNVIIIG  168 (347)
T ss_pred             CCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh-HHHHHHHHHHh-cCCCCCCEEEEEC
Confidence                               11236999999999999999999999999998873 33457777632 21           


Q ss_pred             ----------hhhhCCCE-EEEEec-CCcHHHHHhcCCCeeecCCCCC-cccccCCCCCccc-EEEECCCCC-Ccccccc
Q 048785          126 ----------LAKLGNSH-VTATCG-ARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYD-AVIHCARGI-PWSTFEP  190 (280)
Q Consensus       126 ----------la~~~G~~-Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d-~v~d~~g~~-~~~~~~~  190 (280)
                                +|+.+|++ |+++++ +++.+.++++|+++++++++.. ......+.+.++| ++|||+|+. .+..+++
T Consensus       169 ~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~  248 (347)
T PRK10309        169 AGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAGVPQTVELAIE  248 (347)
T ss_pred             CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCCCHHHHHHHHH
Confidence                      88999995 677775 4788899999999999876544 2233445566788 999999985 5889999


Q ss_pred             cccCCcEEEEeCCCchh-hH-HHHHhhhhccceeeEEEEEcC----CHHHHHHHHHHHHCCCe--eEeccceecchhHHH
Q 048785          191 NLAENGKVIDLTPTPSA-ML-TFAWQKLTFSKKQLVPLLVIP----KGENLVFLVKLLKEGKI--KTLIDSKHLLSKAED  262 (280)
Q Consensus       191 ~l~~~g~~v~~g~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~g~~--~~~~~~~~~~~~~~~  262 (280)
                      +++++|+++.+|..... .. ...+..+..++.++.+.....    ..++++++++++++|++  ++.++++|+|+++++
T Consensus       249 ~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~  328 (347)
T PRK10309        249 IAGPRAQLALVGTLHHDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQ  328 (347)
T ss_pred             HhhcCCEEEEEccCCCCcccChhhhhHHhhcCcEEEEEeccccCCcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHH
Confidence            99999999999854322 11 112234566778888765421    24778999999999998  478899999999999


Q ss_pred             HHHHHhcCCCcCcEEEeC
Q 048785          263 AWAKGADGHATGKIILEP  280 (280)
Q Consensus       263 a~~~~~~~~~~gkvvi~~  280 (280)
                      ||+.+.++...||+++++
T Consensus       329 A~~~~~~~~~~gKvvv~~  346 (347)
T PRK10309        329 AVRDLAGNPMPGKVLLQI  346 (347)
T ss_pred             HHHHHhcCCcceEEEEeC
Confidence            999999998889999875

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=7.4e-38  Score=268.26  Aligned_cols=271  Identities=18%  Similarity=0.199  Sum_probs=215.3

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH----   77 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~----   77 (280)
                      +++|.|.++++||+||+.++++|++|+..+.|..+    ..+|.++|||++|+|+++|++++++++||+|++....    
T Consensus        18 ~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~----~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~~   93 (365)
T cd08277          18 EEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA----TLFPVILGHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGE   93 (365)
T ss_pred             EEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC----CCCCeecccceeEEEEeeCCCCccCCCCCEEEECCCCCCCC
Confidence            57888999999999999999999999999888654    2578899999999999999999999999999874110    


Q ss_pred             ----------------------------------------CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHH
Q 048785           78 ----------------------------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTAL  117 (280)
Q Consensus        78 ----------------------------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~  117 (280)
                                                              ...|+|+||+.++.+.++++|++++++++++++++++|||
T Consensus        94 c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~  173 (365)
T cd08277          94 CSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGY  173 (365)
T ss_pred             CchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCCCCCHHHhhHhcchhHHHH
Confidence                                                    0248899999999999999999999999999999999999


Q ss_pred             HHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCC---cccc-cCCCC
Q 048785          118 EALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPD---GAAL-KSPSG  170 (280)
Q Consensus       118 ~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~---~~~~-~~~~~  170 (280)
                      +++....+                     +|+.+|+ +|+++++ +++.+.++++|+++++++++..   ...+ ..+. 
T Consensus       174 ~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~-  252 (365)
T cd08277         174 GAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTG-  252 (365)
T ss_pred             HHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhC-
Confidence            98754432                     8899999 7999886 4789999999999999876532   2222 2333 


Q ss_pred             CcccEEEECCCCC-CcccccccccCC-cEEEEeCCCchhhHHHHHhhhhccceeeEEEEEc--CCHHHHHHHHHHHHCCC
Q 048785          171 RKYDAVIHCARGI-PWSTFEPNLAEN-GKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVI--PKGENLVFLVKLLKEGK  246 (280)
Q Consensus       171 ~~~d~v~d~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~g~  246 (280)
                      +++|++|||+|+. .+..++++++++ |+++.+|........+....+.. +.++.+....  ..+.+++++++++.+++
T Consensus       253 ~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~~~  331 (365)
T cd08277         253 GGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLIL-GRTWKGSFFGGFKSRSDVPKLVSKYMNKK  331 (365)
T ss_pred             CCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccccccCHhHHhh-CCEEEeeecCCCChHHHHHHHHHHHHCCC
Confidence            6899999999964 478899999875 99999986542222222223332 5666665432  23567899999999997


Q ss_pred             ee--EeccceecchhHHHHHHHHhcCCCcCcEEEe
Q 048785          247 IK--TLIDSKHLLSKAEDAWAKGADGHATGKIILE  279 (280)
Q Consensus       247 ~~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  279 (280)
                      ++  ++++++|+++|+++||+.+.+++ ..|++++
T Consensus       332 ~~~~~~i~~~~~l~~~~~A~~~~~~~~-~~k~~i~  365 (365)
T cd08277         332 FDLDELITHVLPFEEINKGFDLMKSGE-CIRTVIT  365 (365)
T ss_pred             cChhHheeeEEchhhHHHHHHHHHCCC-CceEeeC
Confidence            54  67889999999999999998887 4588763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=1e-37  Score=267.93  Aligned_cols=273  Identities=20%  Similarity=0.215  Sum_probs=216.9

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC---
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH---   77 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~---   77 (280)
                      ++++|.|+|+++||+||+.+++||++|+..+.|..+   ...+|.++|||++|+|+++|++++++++||+|++....   
T Consensus        17 l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~   93 (369)
T cd08301          17 IEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQ---TPLFPRILGHEAAGIVESVGEGVTDLKPGDHVLPVFTGECK   93 (369)
T ss_pred             EEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCC---CCCCCcccccccceEEEEeCCCCCccccCCEEEEccCCCCC
Confidence            367889999999999999999999999998888754   23578999999999999999999999999999874100   


Q ss_pred             -------------------------------------------CCCCcceeEEeecccccccCCCCCChhhhcccchhHH
Q 048785           78 -------------------------------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGL  114 (280)
Q Consensus        78 -------------------------------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~  114 (280)
                                                                 ...|+|+||+.+|...++++|++++++++++++++++
T Consensus        94 ~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~  173 (369)
T cd08301          94 ECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVS  173 (369)
T ss_pred             CCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEECCCCCCHHHhhhhcchhh
Confidence                                                       0237899999999999999999999999999999989


Q ss_pred             HHHHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCC---cccccCC
Q 048785          115 TALEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPD---GAALKSP  168 (280)
Q Consensus       115 ~a~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~  168 (280)
                      |||+++....+                     +|+.+|+ +|+++++ +++.++++++|++.++++++..   ...+...
T Consensus       174 ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~  253 (369)
T cd08301         174 TGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEM  253 (369)
T ss_pred             HHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHH
Confidence            99998765433                     8889999 8999985 5889999999999999876532   1222222


Q ss_pred             CCCcccEEEECCCCCC-cccccccccCC-cEEEEeCCCch-hhHHHHHhhhhccceeeEEEEEc--CCHHHHHHHHHHHH
Q 048785          169 SGRKYDAVIHCARGIP-WSTFEPNLAEN-GKVIDLTPTPS-AMLTFAWQKLTFSKKQLVPLLVI--PKGENLVFLVKLLK  243 (280)
Q Consensus       169 ~~~~~d~v~d~~g~~~-~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~  243 (280)
                      .++++|++|||+|+.. +..++++++++ |+++.+|.... ....+....+ +++.++.+....  ..+++++++++++.
T Consensus       254 ~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~  332 (369)
T cd08301         254 TGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNL-LNGRTLKGTLFGGYKPKTDLPNLVEKYM  332 (369)
T ss_pred             hCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHH-hcCCeEEEEecCCCChHHHHHHHHHHHH
Confidence            2337999999999764 77889999996 99999986442 1222222222 356777776432  23567899999999


Q ss_pred             CCCee--EeccceecchhHHHHHHHHhcCCCcCcEEE
Q 048785          244 EGKIK--TLIDSKHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       244 ~g~~~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                      +|+++  +.++++|+|+++++||+.+.+++.. |+++
T Consensus       333 ~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~~~  368 (369)
T cd08301         333 KKELELEKFITHELPFSEINKAFDLLLKGECL-RCIL  368 (369)
T ss_pred             cCCCCcHHheeeeecHHHHHHHHHHHHCCCce-eEEe
Confidence            99875  4678999999999999999988764 8876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=1.6e-37  Score=267.35  Aligned_cols=273  Identities=17%  Similarity=0.139  Sum_probs=203.2

Q ss_pred             CCCCCCCCCC-------CCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEE
Q 048785            1 HVHVPVPTPR-------KDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVA   73 (280)
Q Consensus         1 ~~~~~~~~~~-------~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~   73 (280)
                      ++|+|.|.|+       ++||+|||.++|||++|+.++.|..+    ..+|.++|||++|+|+++|++|+++++||||++
T Consensus        16 ~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~----~~~p~i~GhE~~G~V~~vG~~V~~~~vGdrV~~   91 (393)
T TIGR02819        16 VQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT----APTGLVLGHEITGEVIEKGRDVEFIKIGDIVSV   91 (393)
T ss_pred             EEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC----CCCCccccceeEEEEEEEcCccccccCCCEEEE
Confidence            3578888764       68999999999999999999887643    256899999999999999999999999999976


Q ss_pred             ee------------------------------cC----CCCCcceeEEeeccc--ccccCCCCCCh----hhhcccchhH
Q 048785           74 IL------------------------------NH----FSGGGLAEFAMVKES--LTASRPLEVSA----AEGAGLPLAG  113 (280)
Q Consensus        74 ~~------------------------------~~----~~~g~~~~~~~v~~~--~~~~~p~~~~~----~~aa~~~~~~  113 (280)
                      ..                              +.    ...|+|+||+.+|..  .++++|++++.    .+++++...+
T Consensus        92 ~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~~~~~~~~~~~~a~l~~~~  171 (393)
T TIGR02819        92 PFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDRDQALEKIRDLTMLSDIF  171 (393)
T ss_pred             ecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCCcccccccccceeeeccHH
Confidence            21                              10    125899999999964  69999988653    3567777788


Q ss_pred             HHHHHHHHhhhh---------------------hhhhCCCEEEEE-ec-CCcHHHHHhcCCCeeecCCCCC-cc-cccCC
Q 048785          114 LTALEALTQSAG---------------------LAKLGNSHVTAT-CG-ARNIEFVKSLGADEVLDYKTPD-GA-ALKSP  168 (280)
Q Consensus       114 ~~a~~~l~~~~~---------------------la~~~G~~Vi~~-~~-~~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~  168 (280)
                      .+||+++.. .+                     +|+.+|++++.+ ++ +++.++++++|++.+...++.+ .. ..+.+
T Consensus       172 ~ta~~a~~~-~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~  250 (393)
T TIGR02819       172 PTGYHGAVT-AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQIL  250 (393)
T ss_pred             HHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHc
Confidence            899998853 22                     888999965444 44 4689999999997543333323 22 33345


Q ss_pred             CCCcccEEEECCCCC---------------CcccccccccCCcEEEEeCCCc-hhh-----------HHHHHhhhhccce
Q 048785          169 SGRKYDAVIHCARGI---------------PWSTFEPNLAENGKVIDLTPTP-SAM-----------LTFAWQKLTFSKK  221 (280)
Q Consensus       169 ~~~~~d~v~d~~g~~---------------~~~~~~~~l~~~g~~v~~g~~~-~~~-----------~~~~~~~~~~~~~  221 (280)
                      .++++|++|||+|++               .++.++++++++|+++.+|... ...           .++.....+.++.
T Consensus       251 ~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  330 (393)
T TIGR02819       251 GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSH  330 (393)
T ss_pred             CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeecCCcccccccccccccccccchHHhhccCc
Confidence            567899999999986               5889999999999999998642 111           1222333444555


Q ss_pred             eeEEEEEcCCHHHHHHHHHHHHCCCeeE--ecc-ceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          222 QLVPLLVIPKGENLVFLVKLLKEGKIKT--LID-SKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~i~~g~~~~--~~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ++.+.. ....+...++++++++|++++  +++ ++|+|+++++||+.+.++.. .|+++++
T Consensus       331 ~i~g~~-~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~~~~~~-~Kvvi~~  390 (393)
T TIGR02819       331 SFHTGQ-TPVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEFDAGAA-KKFVIDP  390 (393)
T ss_pred             eEEecc-CChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHHhhCCc-eEEEEeC
Confidence            555532 222344578999999999864  566 78999999999999987754 7999864

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=2.1e-37  Score=263.36  Aligned_cols=269  Identities=22%  Similarity=0.240  Sum_probs=211.4

Q ss_pred             CCCCCC-CCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccc--cceEEEEEeCCCCCCCCCCCEEEEeecCCC
Q 048785            3 HVPVPT-PRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPAT--DVAGEIIEVGSEVKNFKAGYNVVAILNHFS   79 (280)
Q Consensus         3 ~~~~~~-~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~--e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~   79 (280)
                      +++.|. ++++|||||+.++++||.|...+.+....   ...|+++|+  |++|+|..+|++++.+++||+|+++     
T Consensus        34 ~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~---~~~p~~~G~~~~~~G~v~~vg~~v~~~~~Gd~V~~~-----  105 (348)
T PLN03154         34 KIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDS---YLPPFVPGQRIEGFGVSKVVDSDDPNFKPGDLISGI-----  105 (348)
T ss_pred             ccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCC---CCCCcCCCCeeEeeEEEEEEecCCCCCCCCCEEEec-----
Confidence            356663 58999999999999999988754432221   135788997  8899999999999999999999864     


Q ss_pred             CCcceeEEeecccc--c--ccCCCCCChh-hhcccchhHHHHHHHHHhhhh----------------------hhhhCCC
Q 048785           80 GGGLAEFAMVKESL--T--ASRPLEVSAA-EGAGLPLAGLTALEALTQSAG----------------------LAKLGNS  132 (280)
Q Consensus        80 ~g~~~~~~~v~~~~--~--~~~p~~~~~~-~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~  132 (280)
                       |+|+||..++...  +  +++|++++++ ++|+++++++|||+++...++                      +|+.+|+
T Consensus       106 -~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~  184 (348)
T PLN03154        106 -TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC  184 (348)
T ss_pred             -CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC
Confidence             5799999998753  5  4458999986 688899999999999965433                      8899999


Q ss_pred             EEEEEecC-CcHHHHH-hcCCCeeecCCCC-C-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhh
Q 048785          133 HVTATCGA-RNIEFVK-SLGADEVLDYKTP-D-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAM  208 (280)
Q Consensus       133 ~Vi~~~~~-~~~~~~~-~~g~~~v~~~~~~-~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~  208 (280)
                      +|++++++ ++.+.++ ++|+++++++++. . ...+....++++|++|||+|+..+..++++++++|+++.+|......
T Consensus       185 ~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG~~~~~~~~~~l~~~G~iv~~G~~~~~~  264 (348)
T PLN03154        185 YVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVGGDMLDAALLNMKIHGRIAVCGMVSLNS  264 (348)
T ss_pred             EEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCCHHHHHHHHHHhccCCEEEEECccccCC
Confidence            99998865 7888886 7999999998753 3 22222223458999999999988899999999999999998543221


Q ss_pred             H-----HHHHhhhhccceeeEEEEEcC----CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEe
Q 048785          209 L-----TFAWQKLTFSKKQLVPLLVIP----KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILE  279 (280)
Q Consensus       209 ~-----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  279 (280)
                      .     .+....+..+++++.++....    ..+.++++++++++|++++.+..+|+|+++++|++.+.+++..||+|++
T Consensus       265 ~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~~~~~~~~L~~~~~A~~~l~~g~~~GKvVl~  344 (348)
T PLN03154        265 LSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVYIEDMSEGLESAPAALVGLFSGKNVGKQVIR  344 (348)
T ss_pred             CCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccCceecccCHHHHHHHHHHHHcCCCCceEEEE
Confidence            1     112334556777777765321    2356788999999999999888899999999999999999999999997


Q ss_pred             C
Q 048785          280 P  280 (280)
Q Consensus       280 ~  280 (280)
                      +
T Consensus       345 ~  345 (348)
T PLN03154        345 V  345 (348)
T ss_pred             e
Confidence            4

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=5.3e-37  Score=260.48  Aligned_cols=264  Identities=16%  Similarity=0.158  Sum_probs=200.6

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCC-CCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec---
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPI-LPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN---   76 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~-~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~---   76 (280)
                      ++|+|.|. +++||+|||.++|||++|+.++.|...+. ....+|.++|||++|+|+++|.+  .|++||+|+....   
T Consensus        16 ~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~~~vGdrV~~~~~~~~   92 (341)
T cd08237          16 VTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--TYKVGTKVVMVPNTPV   92 (341)
T ss_pred             EeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--ccCCCCEEEECCCCCc
Confidence            36788885 99999999999999999999998875321 11257899999999999998875  6999999986421   


Q ss_pred             ------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhh----h---------
Q 048785           77 ------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA----G---------  125 (280)
Q Consensus        77 ------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~----~---------  125 (280)
                                        ....|+|+||+.+|++.++++|+++++++||++ ..++++|+++....    +         
T Consensus        93 ~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~~-~~~~~a~~a~~~~~~~~~~~g~~VlV~G  171 (341)
T cd08237          93 EKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAAFT-ELVSVGVHAISRFEQIAHKDRNVIGVWG  171 (341)
T ss_pred             hhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhhhh-chHHHHHHHHHHHhhcCCCCCCEEEEEC
Confidence                              123599999999999999999999999887755 36668888885421    1         


Q ss_pred             ----------hhhh-CC-CEEEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCC----Ccccc
Q 048785          126 ----------LAKL-GN-SHVTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGI----PWSTF  188 (280)
Q Consensus       126 ----------la~~-~G-~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~----~~~~~  188 (280)
                                +++. +| ++|+++++ ++|++++++++++..++  +    .   ....++|++|||+|+.    .+..+
T Consensus       172 ~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~--~----~---~~~~g~d~viD~~G~~~~~~~~~~~  242 (341)
T cd08237         172 DGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLID--D----I---PEDLAVDHAFECVGGRGSQSAINQI  242 (341)
T ss_pred             CCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehh--h----h---hhccCCcEEEECCCCCccHHHHHHH
Confidence                      5664 55 48988885 47888888776654332  1    0   1123599999999963    37889


Q ss_pred             cccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCC-----CeeEeccceecc---hhH
Q 048785          189 EPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEG-----KIKTLIDSKHLL---SKA  260 (280)
Q Consensus       189 ~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g-----~~~~~~~~~~~~---~~~  260 (280)
                      +++++++|+++.+|.... ...+....+..+++++.+... ...++++++++++.++     .++++++++|++   +++
T Consensus       243 ~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~k~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~  320 (341)
T cd08237         243 IDYIRPQGTIGLMGVSEY-PVPINTRMVLEKGLTLVGSSR-STREDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDI  320 (341)
T ss_pred             HHhCcCCcEEEEEeecCC-CcccCHHHHhhCceEEEEecc-cCHHHHHHHHHHHHhCCcccCChHHHhccccccccHHHH
Confidence            999999999999985432 233444556678888887653 4567899999999999     577889999998   577


Q ss_pred             HHHHHHHhcCCCcCcEEEeC
Q 048785          261 EDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       261 ~~a~~~~~~~~~~gkvvi~~  280 (280)
                      +++|+.+.++ ..||+||++
T Consensus       321 ~~a~~~~~~~-~~gKvvi~~  339 (341)
T cd08237         321 HRAFESDLTN-SWGKTVMEW  339 (341)
T ss_pred             HHHHHHHhhc-CcceEEEEe
Confidence            7777776655 678999864

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=7.4e-37  Score=258.42  Aligned_cols=263  Identities=21%  Similarity=0.229  Sum_probs=209.2

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +|+|.|+|+++||+|||.++++|+.++.   |....   ...|.++|+|++|+|+++|+   .+++||+|+++      +
T Consensus        22 ~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~---~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~------~   86 (325)
T TIGR02825        22 KTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRL---KEGDTMMGQQVARVVESKNV---ALPKGTIVLAS------P   86 (325)
T ss_pred             EeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcC---CCCCcEecceEEEEEEeCCC---CCCCCCEEEEe------c
Confidence            5789999999999999999999996553   43321   13467999999999999874   59999999975      3


Q ss_pred             cceeEEeecccccccC----CCCCChhhh-cccchhHHHHHHHHHhhhh----------------------hhhhCCCEE
Q 048785           82 GLAEFAMVKESLTASR----PLEVSAAEG-AGLPLAGLTALEALTQSAG----------------------LAKLGNSHV  134 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~----p~~~~~~~a-a~~~~~~~~a~~~l~~~~~----------------------la~~~G~~V  134 (280)
                      +|++|+.++.+.+.++    |++++++++ ++++++++|||+++...++                      +|+..|++|
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~V  166 (325)
T TIGR02825        87 GWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKV  166 (325)
T ss_pred             CceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEE
Confidence            6999999998887766    899999987 6789999999999866543                      889999999


Q ss_pred             EEEecC-CcHHHHHhcCCCeeecCCCC-C-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCch-----
Q 048785          135 TATCGA-RNIEFVKSLGADEVLDYKTP-D-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPS-----  206 (280)
Q Consensus       135 i~~~~~-~~~~~~~~~g~~~v~~~~~~-~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~-----  206 (280)
                      ++++++ ++.++++++|+++++++++. . ...+....++++|++|||+|+..+..++++++++|+++.+|....     
T Consensus       167 i~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~  246 (325)
T TIGR02825       167 VGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTG  246 (325)
T ss_pred             EEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCHHHHHHHHHHhCcCcEEEEecchhhcccCC
Confidence            998864 78899999999999998764 3 223333445689999999999888999999999999999885321     


Q ss_pred             -hhHHHHHhhhhccceeeEEEEEcC-----CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEe
Q 048785          207 -AMLTFAWQKLTFSKKQLVPLLVIP-----KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILE  279 (280)
Q Consensus       207 -~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  279 (280)
                       .........+.+++.++.++....     ..+.++++++++++|++++.+..+|+++++++|++.+.+++..||+|++
T Consensus       247 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gkvVv~  325 (325)
T TIGR02825       247 PLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYKEYVIEGFENMPAAFMGMLKGENLGKTIVK  325 (325)
T ss_pred             CCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCcccceeccccHHHHHHHHHHHhcCCCCCeEEeC
Confidence             111112334555667776654311     2457889999999999998777889999999999999999999999974

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08293 PTGR2 Prostaglandin reductase

Probab=100.00  E-value=1.9e-36  Score=258.05  Aligned_cols=274  Identities=20%  Similarity=0.218  Sum_probs=203.5

Q ss_pred             CCCCCCCCC-CCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCC
Q 048785            2 VHVPVPTPR-KDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSG   80 (280)
Q Consensus         2 ~~~~~~~~~-~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   80 (280)
                      +|+|.|+|. ++||+|||.|+|||+.|++.............+|.++|||++|+|+++|++++.+++||+|+++.     
T Consensus        26 ~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----  100 (345)
T cd08293          26 EECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN-----  100 (345)
T ss_pred             EeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC-----
Confidence            578888874 99999999999999999754322111001124678999999999999999999999999998752     


Q ss_pred             CcceeEEeecccccccCCCCCChhh----hcccchhHHHHHHHHHhhh-------h-----------------hhhhCCC
Q 048785           81 GGLAEFAMVKESLTASRPLEVSAAE----GAGLPLAGLTALEALTQSA-------G-----------------LAKLGNS  132 (280)
Q Consensus        81 g~~~~~~~v~~~~~~~~p~~~~~~~----aa~~~~~~~~a~~~l~~~~-------~-----------------la~~~G~  132 (280)
                      ++|+||+++|.+.++++|+++++.+    +++++.+++|||+++.+.+       +                 +|+++|+
T Consensus       101 ~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~  180 (345)
T cd08293         101 WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGC  180 (345)
T ss_pred             CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCC
Confidence            6799999999999999999864332    4566778899999985432       2                 8899999


Q ss_pred             -EEEEEecC-CcHHHHHh-cCCCeeecCCCCC-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCch--
Q 048785          133 -HVTATCGA-RNIEFVKS-LGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPS--  206 (280)
Q Consensus       133 -~Vi~~~~~-~~~~~~~~-~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~--  206 (280)
                       +|++++++ ++.+.+++ +|+++++++++.+ ...+....++++|++|||+|+..+..++++++++|+++.+|....  
T Consensus       181 ~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~  260 (345)
T cd08293         181 SRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGGEISDTVISQMNENSHIILCGQISQYN  260 (345)
T ss_pred             CEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCcHHHHHHHHHhccCCEEEEEeeeeccc
Confidence             89999965 77788765 9999999987655 222222234689999999999888899999999999999873211  


Q ss_pred             ------hhHHHHHhhh-hccceeeEEEEEcC----CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCc
Q 048785          207 ------AMLTFAWQKL-TFSKKQLVPLLVIP----KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGK  275 (280)
Q Consensus       207 ------~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gk  275 (280)
                            .........+ ..++.....+....    ..+.++++++++++|++++....+++++++++|++.+.+++..||
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gk  340 (345)
T cd08293         261 KDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGKLKVKETVYEGLENAGEAFQSMMNGGNIGK  340 (345)
T ss_pred             CccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHHHHHHHCCCccceeEEeecHHHHHHHHHHHhcCCCCCe
Confidence                  0000000111 11222222221111    235577888999999998776667799999999999999998999


Q ss_pred             EEEeC
Q 048785          276 IILEP  280 (280)
Q Consensus       276 vvi~~  280 (280)
                      +|+++
T Consensus       341 vvl~~  345 (345)
T cd08293         341 QIVKV  345 (345)
T ss_pred             EEEEC
Confidence            99875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=1.3e-36  Score=259.57  Aligned_cols=275  Identities=24%  Similarity=0.282  Sum_probs=219.3

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCC--------CCCCCCCccccccceEEEEEeCCCCCCCCCCCEEE
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARP--------ILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVV   72 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~--------~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~   72 (280)
                      ++++|.|+++++||+||+.++++|++|+....+....        .....+|.++|||++|+|+++|++++.+++||+|+
T Consensus        14 ~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~   93 (351)
T cd08233          14 VEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVV   93 (351)
T ss_pred             EEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEeCCCCCCCCCCCEEE
Confidence            3578899999999999999999999999876543110        00123678999999999999999999999999998


Q ss_pred             Eeec------------------------C-CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh--
Q 048785           73 AILN------------------------H-FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG--  125 (280)
Q Consensus        73 ~~~~------------------------~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~--  125 (280)
                      +...                        . ..+|+|++|+.++...++++|+++++++++++ ..+.+||+++ ..++  
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~  171 (351)
T cd08233          94 VEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFK  171 (351)
T ss_pred             ECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCC
Confidence            6311                        0 12699999999999999999999999998776 5667999998 4332  


Q ss_pred             -------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCC
Q 048785          126 -------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARG  182 (280)
Q Consensus       126 -------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~  182 (280)
                                         +|+.+|+ +|+++++ +++.++++++|++.++++++..  ......+.++++|++|||+|+
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~  251 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV  251 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence                               8889999 8888885 4788888899999999987765  223344566679999999986


Q ss_pred             -CCcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCee--Eeccceecchh
Q 048785          183 -IPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIK--TLIDSKHLLSK  259 (280)
Q Consensus       183 -~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~--~~~~~~~~~~~  259 (280)
                       ..+..++++++++|+++.+|... ....+....+..++.++.+... ...++++++++++++|+++  +.++++|+++|
T Consensus       252 ~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e  329 (351)
T cd08233         252 QATLDTAIDALRPRGTAVNVAIWE-KPISFNPNDLVLKEKTLTGSIC-YTREDFEEVIDLLASGKIDAEPLITSRIPLED  329 (351)
T ss_pred             HHHHHHHHHhccCCCEEEEEccCC-CCCccCHHHHHhhCcEEEEEec-cCcchHHHHHHHHHcCCCChHHheEEEecHHH
Confidence             45888999999999999998654 2234445556677888877653 3568899999999999995  56788999999


Q ss_pred             H-HHHHHHHhcCCCc-CcEEEe
Q 048785          260 A-EDAWAKGADGHAT-GKIILE  279 (280)
Q Consensus       260 ~-~~a~~~~~~~~~~-gkvvi~  279 (280)
                      + ++||+.+.+++.. +|++|.
T Consensus       330 ~~~~a~~~~~~~~~~~~k~v~~  351 (351)
T cd08233         330 IVEKGFEELINDKEQHVKILVS  351 (351)
T ss_pred             HHHHHHHHHHhCCCCceEEEeC
Confidence            6 7999999999874 899873

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=2.9e-36  Score=254.74  Aligned_cols=272  Identities=21%  Similarity=0.259  Sum_probs=221.3

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +++|.|.+.++||+||+.++++|+.|+....|..+.  ...+|.++|||++|+|+++|++++.+++||+|++..   ..|
T Consensus        19 ~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~--~~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~---~~g   93 (324)
T cd08292          19 GEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGY--KPELPAIGGSEAVGVVDAVGEGVKGLQVGQRVAVAP---VHG   93 (324)
T ss_pred             eecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCC--CCCCCCCCCcceEEEEEEeCCCCCCCCCCCEEEecc---CCC
Confidence            578889999999999999999999999988887642  124578999999999999999999999999999863   378


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEec
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCG  139 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~  139 (280)
                      +|++|+.++...++++|+++++++++++++.+++||+++.. ++                      +|+.+|++++++++
T Consensus        94 ~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~~~-~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~  172 (324)
T cd08292          94 TWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLLDF-LGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVR  172 (324)
T ss_pred             cceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHHHh-hCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEec
Confidence            99999999999999999999999999999888899998843 22                      88999999988885


Q ss_pred             -CCcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhh
Q 048785          140 -ARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKL  216 (280)
Q Consensus       140 -~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  216 (280)
                       +++.+.++++|+++++++++..  ......+.++++|++|||+|+.....++++++++|+++.+|........+.....
T Consensus       173 ~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  252 (324)
T cd08292         173 RDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVGGKLAGELLSLLGEGGTLVSFGSMSGEPMQISSGDL  252 (324)
T ss_pred             CHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCCChhHHHHHHhhcCCcEEEEEecCCCCCCcCCHHHH
Confidence             4777888889999998887654  2233456677899999999998888999999999999999854322222222233


Q ss_pred             hccceeeEEEEEcC---------CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEe
Q 048785          217 TFSKKQLVPLLVIP---------KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILE  279 (280)
Q Consensus       217 ~~~~~~~~~~~~~~---------~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  279 (280)
                      ..++..+.+.....         ..+.+..+++++.+|.+++.+.+.|+++++++|++.+.++...+|+++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~  324 (324)
T cd08292         253 IFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLPVEAVFDLGDAAKAAAASMRPGRAGKVLLR  324 (324)
T ss_pred             hhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCccccEecHHHHHHHHHHHHcCCCCceEEeC
Confidence            44666666554311         1356788999999999986678899999999999999988888898874

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=100.00  E-value=2.1e-36  Score=235.99  Aligned_cols=275  Identities=23%  Similarity=0.264  Sum_probs=228.7

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCC
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSG   80 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   80 (280)
                      ++++++|.....+|+||..|+.|||+|+..++|.++.  -..+|.+-|+|++|+|+.+|+++++|++||+|+-...  ..
T Consensus        37 l~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpv--rP~~PAVgGnEGv~eVv~vGs~vkgfk~Gd~VIp~~a--~l  112 (354)
T KOG0025|consen   37 LKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPV--RPELPAVGGNEGVGEVVAVGSNVKGFKPGDWVIPLSA--NL  112 (354)
T ss_pred             eecccCCCCCCCceeeeeeecCCChHHhhhhccccCC--CCCCCcccCCcceEEEEEecCCcCccCCCCeEeecCC--CC
Confidence            3567888877888999999999999999999999974  2367899999999999999999999999999987643  67


Q ss_pred             CcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEe
Q 048785           81 GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATC  138 (280)
Q Consensus        81 g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~  138 (280)
                      |+|+++.+.+++.++++++.++.+.||++....+|||..|.+..+                      +|+++|.+-|.++
T Consensus       113 GtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvV  192 (354)
T KOG0025|consen  113 GTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVV  192 (354)
T ss_pred             ccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEe
Confidence            999999999999999999999999999999999999999987655                      9999999999888


Q ss_pred             cC-CcH----HHHHhcCCCeeecCCCCCcccc--cCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHH
Q 048785          139 GA-RNI----EFVKSLGADEVLDYKTPDGAAL--KSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTF  211 (280)
Q Consensus       139 ~~-~~~----~~~~~~g~~~v~~~~~~~~~~~--~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~  211 (280)
                      ++ .+.    +.++++||++|+...+.....+  .......+.+.|||+|+.....+.+.|..||..+++|..+..+..+
T Consensus       193 RdR~~ieel~~~Lk~lGA~~ViTeeel~~~~~~k~~~~~~~prLalNcVGGksa~~iar~L~~GgtmvTYGGMSkqPv~~  272 (354)
T KOG0025|consen  193 RDRPNIEELKKQLKSLGATEVITEEELRDRKMKKFKGDNPRPRLALNCVGGKSATEIARYLERGGTMVTYGGMSKQPVTV  272 (354)
T ss_pred             ecCccHHHHHHHHHHcCCceEecHHHhcchhhhhhhccCCCceEEEeccCchhHHHHHHHHhcCceEEEecCccCCCccc
Confidence            65 344    3446799999996544331111  1234456899999999999999999999999999999988888888


Q ss_pred             HHhhhhccceeeEEEEEcC----------CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCC-CcCcEEEe
Q 048785          212 AWQKLTFSKKQLVPLLVIP----------KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGH-ATGKIILE  279 (280)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~-~~gkvvi~  279 (280)
                      +...+.|+.+.+.|+++..          ..+.+.++.+|+..|+++.+.....+|++.+.|++...+.- ..||.++.
T Consensus       273 ~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~~e~v~L~~~~tald~~L~~~~~~~Kq~i~  351 (354)
T KOG0025|consen  273 PTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPNCEKVPLADHKTALDAALSKFGKSGKQIIV  351 (354)
T ss_pred             ccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeeccccceeeechhhhHHHHHHHHHhccCCceEEE
Confidence            8899999999999987721          12567889999999999988877889999989888655433 33455554

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=2.8e-36  Score=258.49  Aligned_cols=275  Identities=20%  Similarity=0.263  Sum_probs=221.5

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCC------CCCCCEEEEe
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKN------FKAGYNVVAI   74 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~------~~~Gd~V~~~   74 (280)
                      ++++|.|.++++||+||+.++++|++|+....|..+.   ..+|.++|||++|+|+++|++++.      +++||+|++.
T Consensus        15 ~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~~~~Gd~V~~~   91 (361)
T cd08231          15 IREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPR---VPLPIILGHEGVGRVVALGGGVTTDVAGEPLKVGDRVTWS   91 (361)
T ss_pred             EEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCC---CCCCcccccCCceEEEEeCCCccccccCCccCCCCEEEEc
Confidence            3578899999999999999999999999998887641   357789999999999999999986      9999999876


Q ss_pred             ec-------------------------------CCCCCcceeEEeeccc-ccccCCCCCChhhhcccchhHHHHHHHHHh
Q 048785           75 LN-------------------------------HFSGGGLAEFAMVKES-LTASRPLEVSAAEGAGLPLAGLTALEALTQ  122 (280)
Q Consensus        75 ~~-------------------------------~~~~g~~~~~~~v~~~-~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~  122 (280)
                      ..                               ....|+|++|+.++++ .++++|++++++++++++++++|||+++..
T Consensus        92 ~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~al~~  171 (361)
T cd08231          92 VGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDR  171 (361)
T ss_pred             ccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEECCCCCCHHHHHHhcCHHHHHHHHHHh
Confidence            21                               0135899999999986 799999999999999988999999999865


Q ss_pred             hhh---------------------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCCCCCc-----ccccCCCCCccc
Q 048785          123 SAG---------------------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYKTPDG-----AALKSPSGRKYD  174 (280)
Q Consensus       123 ~~~---------------------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~-----~~~~~~~~~~~d  174 (280)
                      ...                     +|+.+|+ +|++++++ ++.++++++|++.++++++...     .....+.++++|
T Consensus       172 ~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d  251 (361)
T cd08231         172 AGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGAD  251 (361)
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCc
Confidence            432                     8889999 99998864 7888889999999988765431     233456677899


Q ss_pred             EEEECCCCC-CcccccccccCCcEEEEeCCCch-hhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCC--C--ee
Q 048785          175 AVIHCARGI-PWSTFEPNLAENGKVIDLTPTPS-AMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEG--K--IK  248 (280)
Q Consensus       175 ~v~d~~g~~-~~~~~~~~l~~~g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g--~--~~  248 (280)
                      ++|||+|+. .+..++++++++|+++.+|.... ....+....+..++..+.+... ...++++++++++.++  +  ++
T Consensus       252 ~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  330 (361)
T cd08231         252 VVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHN-YDPSHLYRAVRFLERTQDRFPFA  330 (361)
T ss_pred             EEEECCCChHHHHHHHHHhccCCEEEEEcCCCCCCccccCHHHHhhcccEEEEccc-CCchhHHHHHHHHHhccCcCCch
Confidence            999999874 47889999999999999985432 2233334445667777776653 3566788899999887  3  45


Q ss_pred             EeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          249 TLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       249 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ++++++|+++++++||+.+.++.. +|++|++
T Consensus       331 ~~i~~~~~l~~~~~a~~~~~~~~~-~k~vi~~  361 (361)
T cd08231         331 ELVTHRYPLEDINEALELAESGTA-LKVVIDP  361 (361)
T ss_pred             hheeeeeeHHHHHHHHHHHHcCCc-eEEEeCC
Confidence            677889999999999999988774 7999875

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=1.5e-36  Score=257.15  Aligned_cols=274  Identities=27%  Similarity=0.315  Sum_probs=210.5

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCc-cccccceEEEEEeCCCCCCCCCCCEEEEe------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPY-IPATDVAGEIIEVGSEVKNFKAGYNVVAI------   74 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~-~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~------   74 (280)
                      ++.+.|.++++||+||+.++|||++|++.++|..+..   ..|. ++|||++|+|+++| .++.+++||||+..      
T Consensus        16 ~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~---~~~~~i~GHE~~G~V~evG-~~~~~~~GdrVvv~~~~~Cg   91 (350)
T COG1063          16 EEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFV---PPGDIILGHEFVGEVVEVG-VVRGFKVGDRVVVEPNIPCG   91 (350)
T ss_pred             ccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCC---CCCCcccCccceEEEEEec-cccCCCCCCEEEECCCcCCC
Confidence            4555666889999999999999999999999876421   3334 99999999999999 77889999999873      


Q ss_pred             ------------ec------C-----CCCCcceeEEeeccccccc-CCCCCChhhhcccchhHHHHHHHHHhhhh-----
Q 048785           75 ------------LN------H-----FSGGGLAEFAMVKESLTAS-RPLEVSAAEGAGLPLAGLTALEALTQSAG-----  125 (280)
Q Consensus        75 ------------~~------~-----~~~g~~~~~~~v~~~~~~~-~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----  125 (280)
                                  +.      .     ..+|+|+||+.+|.+.+++ +|+++ +.+++++.-.+.+++++......     
T Consensus        92 ~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~-~~~~aal~epla~~~~~~a~~~~~~~~~  170 (350)
T COG1063          92 HCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGI-DEEAAALTEPLATAYHGHAERAAVRPGG  170 (350)
T ss_pred             CChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCC-ChhhhhhcChhhhhhhhhhhccCCCCCC
Confidence                        10      0     1469999999999755555 58887 55666665555688666322221     


Q ss_pred             ----------------hhhhCCC-EEEEEec-CCcHHHHHh-cCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCC
Q 048785          126 ----------------LAKLGNS-HVTATCG-ARNIEFVKS-LGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIP  184 (280)
Q Consensus       126 ----------------la~~~G~-~Vi~~~~-~~~~~~~~~-~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~  184 (280)
                                      +++.+|+ +||+++. ++|++++++ .|++.+++.....  ......+.+.++|++|||+|...
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~  250 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP  250 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence                            8889998 8888885 589999988 6666666554433  23445667789999999999754


Q ss_pred             -cccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeE--eccceecchhHH
Q 048785          185 -WSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT--LIDSKHLLSKAE  261 (280)
Q Consensus       185 -~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~--~~~~~~~~~~~~  261 (280)
                       +..++++++++|+++.+|........+....+..+++++.+........+++.+++++++|++.+  ++++.+++++++
T Consensus       251 ~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~~~~~~~~~~~~ll~~g~i~~~~lit~~~~~~~~~  330 (350)
T COG1063         251 ALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERALDLLASGKIDPEKLITHRLPLDDAA  330 (350)
T ss_pred             HHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEEeccCCCCcccHHHHHHHHHcCCCChhHceEeeccHHHHH
Confidence             88999999999999999865443224556677788999998754356778999999999999864  668899999999


Q ss_pred             HHHHHHhcCCC-cCcEEEeC
Q 048785          262 DAWAKGADGHA-TGKIILEP  280 (280)
Q Consensus       262 ~a~~~~~~~~~-~gkvvi~~  280 (280)
                      +||+.+.+... .-|+++++
T Consensus       331 ~a~~~~~~~~~~~~Kv~i~~  350 (350)
T COG1063         331 EAYELFADRKEEAIKVVLKP  350 (350)
T ss_pred             HHHHHHHhcCCCeEEEEecC
Confidence            99999997554 55888864

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.7e-37  Score=243.05  Aligned_cols=275  Identities=17%  Similarity=0.189  Sum_probs=222.7

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe------
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI------   74 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~------   74 (280)
                      +||+.+++|+.+||+||+.++++|++|...++|..+   ...||.++|||.+|+|+++|+.|+.+++||+|+..      
T Consensus        22 IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~---~~~fP~IlGHEaaGIVESvGegV~~vk~GD~Viplf~p~Cg   98 (375)
T KOG0022|consen   22 IEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDP---EGLFPVILGHEAAGIVESVGEGVTTVKPGDHVIPLFTPQCG   98 (375)
T ss_pred             EEEEEeCCCCCceEEEEEEEEeeccccceeecCCCc---cccCceEecccceeEEEEecCCccccCCCCEEeeccccCCC
Confidence            478899999999999999999999999999999864   34789999999999999999999999999999863      


Q ss_pred             ----------------------------------------ecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHH
Q 048785           75 ----------------------------------------LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGL  114 (280)
Q Consensus        75 ----------------------------------------~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~  114 (280)
                                                              +....-.+|+||.+++...++++++....+.++.+.+...
T Consensus        99 eCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId~~aPl~kvcLLgCGvs  178 (375)
T KOG0022|consen   99 ECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKIDPSAPLEKVCLLGCGVS  178 (375)
T ss_pred             CcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecCCCCChhheeEeecccc
Confidence                                                    0011224899999999999999999999999999999999


Q ss_pred             HHHHHHHhhhh---------------------hhhhCCC-EEEEEe-cCCcHHHHHhcCCCeeecCCCCC---cccccCC
Q 048785          115 TALEALTQSAG---------------------LAKLGNS-HVTATC-GARNIEFVKSLGADEVLDYKTPD---GAALKSP  168 (280)
Q Consensus       115 ~a~~~l~~~~~---------------------la~~~G~-~Vi~~~-~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~  168 (280)
                      |.|.|..+.++                     -||+.|| ++|+++ .+++.+.++++|+++.+|+.+..   .+.+...
T Consensus       179 TG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~Em  258 (375)
T KOG0022|consen  179 TGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEM  258 (375)
T ss_pred             ccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHH
Confidence            99999888776                     6677888 999999 67999999999999999998544   2222333


Q ss_pred             CCCcccEEEECCCCCC-cccccccccCC-cEEEEeCCCch-hhHHHHHhhhhccceeeEEEEE--cCCHHHHHHHHHHHH
Q 048785          169 SGRKYDAVIHCARGIP-WSTFEPNLAEN-GKVIDLTPTPS-AMLTFAWQKLTFSKKQLVPLLV--IPKGENLVFLVKLLK  243 (280)
Q Consensus       169 ~~~~~d~v~d~~g~~~-~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~  243 (280)
                      .+.++|+-|||+|+.. ++.++.+...+ |.-+.+|.... ...+....++ +.+..+.+...  +..+.+++.+++...
T Consensus       259 TdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l-~~GR~~~Gs~FGG~K~~~~iP~lV~~y~  337 (375)
T KOG0022|consen  259 TDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQL-VTGRTWKGSAFGGFKSKSDIPKLVKDYM  337 (375)
T ss_pred             hcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhh-ccccEEEEEecccccchhhhhHHHHHHH
Confidence            4588999999999965 77888888888 88888874332 2222222222 23555555444  357889999999988


Q ss_pred             CCCe--eEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          244 EGKI--KTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       244 ~g~~--~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ++++  +..|+|++||+++++||+.|.+++.. +.|+.+
T Consensus       338 ~~~l~ld~~ITh~l~f~~In~AF~ll~~Gksi-R~vl~~  375 (375)
T KOG0022|consen  338 KKKLNLDEFITHELPFEEINKAFDLLHEGKSI-RCVLWM  375 (375)
T ss_pred             hCccchhhhhhcccCHHHHHHHHHHHhCCceE-EEEEeC
Confidence            8876  57999999999999999999988876 666653

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=3.1e-36  Score=261.65  Aligned_cols=278  Identities=20%  Similarity=0.245  Sum_probs=209.1

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhH-hccCCCCCC---CCCCccccccceEEEEEeCCCCC-CCCCCCEEEEee
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIK-KGVARPILP---RKFPYIPATDVAGEIIEVGSEVK-NFKAGYNVVAIL   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~-~g~~~~~~~---~~~p~~~G~e~~G~V~~vG~~v~-~~~~Gd~V~~~~   75 (280)
                      ++|+|.|.++++||+||+.++|||++|+..+ .|...+..+   ..+|.++|||++|+|+++|++++ .+++||+|++..
T Consensus        16 ~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~vGdrV~~~~   95 (410)
T cd08238          16 LEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGKKWQGKYKPGQRFVIQP   95 (410)
T ss_pred             EEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCCCccCCCCCCCEEEEcC
Confidence            3678999999999999999999999999976 454211000   14688999999999999999998 599999998742


Q ss_pred             -------------cCCCCCcceeEEeeccc----ccccCCCCCChhhhccc-chhH-HHHHHHHH--------hhhh---
Q 048785           76 -------------NHFSGGGLAEFAMVKES----LTASRPLEVSAAEGAGL-PLAG-LTALEALT--------QSAG---  125 (280)
Q Consensus        76 -------------~~~~~g~~~~~~~v~~~----~~~~~p~~~~~~~aa~~-~~~~-~~a~~~l~--------~~~~---  125 (280)
                                   +....|+|+||+.+|.+    .++++|+++++++++.+ +.+. .+++.++.        +.++   
T Consensus        96 ~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~  175 (410)
T cd08238          96 ALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKP  175 (410)
T ss_pred             CcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCCCC
Confidence                         11236999999999987    58999999999998866 4221 23343321        1111   


Q ss_pred             -------------------hhhhCCC---EEEEEec-CCcHHHHHhc--------CCC-eeecCCC-CC--cccccCCCC
Q 048785          126 -------------------LAKLGNS---HVTATCG-ARNIEFVKSL--------GAD-EVLDYKT-PD--GAALKSPSG  170 (280)
Q Consensus       126 -------------------la~~~G~---~Vi~~~~-~~~~~~~~~~--------g~~-~v~~~~~-~~--~~~~~~~~~  170 (280)
                                         +|+.+|+   +|+++++ +++++.++++        |++ .++++++ .+  ......+.+
T Consensus       176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g  255 (410)
T cd08238         176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGG  255 (410)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCC
Confidence                               7787653   7998886 4788999887        666 5677654 22  222334566


Q ss_pred             CcccEEEECCCC-CCcccccccccCCcEEEEeCCC-c-hhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCe
Q 048785          171 RKYDAVIHCARG-IPWSTFEPNLAENGKVIDLTPT-P-SAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKI  247 (280)
Q Consensus       171 ~~~d~v~d~~g~-~~~~~~~~~l~~~g~~v~~g~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~  247 (280)
                      +++|++|||+|+ ..+..++++++++|+++.++.. . .....++...+..++.++.+.. ....++++++++++++|++
T Consensus       256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~-~~~~~~~~~~~~li~~g~i  334 (410)
T cd08238         256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDKNFSAPLNFYNVHYNNTHYVGTS-GGNTDDMKEAIDLMAAGKL  334 (410)
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCCCccccccHHHhhhcCcEEEEeC-CCCHHHHHHHHHHHHcCCC
Confidence            789999999986 4588899999999988766422 1 1123455556777888888865 3467789999999999999


Q ss_pred             eE--eccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          248 KT--LIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       248 ~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ++  +++++|+|+++++||+.+. ++..||+++.+
T Consensus       335 ~~~~~it~~~~l~~~~~A~~~~~-~~~~gKvvl~~  368 (410)
T cd08238         335 NPARMVTHIGGLNAAAETTLNLP-GIPGGKKLIYT  368 (410)
T ss_pred             chhhcEEEEecHHHHHHHHHHhh-ccCCceEEEEC
Confidence            86  7899999999999999998 77789999864

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=2.1e-35  Score=252.16  Aligned_cols=276  Identities=28%  Similarity=0.369  Sum_probs=222.2

Q ss_pred             CCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCC-----------------CCCCCCCccccccceEEEEEeCCCCCCC
Q 048785            3 HVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARP-----------------ILPRKFPYIPATDVAGEIIEVGSEVKNF   65 (280)
Q Consensus         3 ~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~-----------------~~~~~~p~~~G~e~~G~V~~vG~~v~~~   65 (280)
                      +++.|.+.+++|+||+.++++|++|+.+..|..+.                 .....+|.++|||++|+|+++|++++.+
T Consensus        20 ~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   99 (350)
T cd08274          20 DVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRIQGADIVGRVVAVGEGVDTA   99 (350)
T ss_pred             cCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcccCCcceEEEEEeCCCCCCC
Confidence            35667789999999999999999999988775431                 0123567899999999999999999999


Q ss_pred             CCCCEEEEe----------------ecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----
Q 048785           66 KAGYNVVAI----------------LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----  125 (280)
Q Consensus        66 ~~Gd~V~~~----------------~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----  125 (280)
                      ++||+|++.                .+....|++++|+.++.+.++++|+++++.+++++++++.|||+++ ...+    
T Consensus       100 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g  178 (350)
T cd08274         100 RIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAG  178 (350)
T ss_pred             CCCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCC
Confidence            999999874                2222358999999999999999999999999999999999999998 3322    


Q ss_pred             ------------------hhhhCCCEEEEEecCCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCccc
Q 048785          126 ------------------LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWST  187 (280)
Q Consensus       126 ------------------la~~~G~~Vi~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  187 (280)
                                        +|+.+|++|++++++++.+.++++|++.+++.+.........+.++++|++|||+|+..+..
T Consensus       179 ~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~  258 (350)
T cd08274         179 ETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAAKEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGGPLFPD  258 (350)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCchhhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCHHHHHH
Confidence                              88899999999887668888889998766655443322244456778999999999988899


Q ss_pred             ccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHH
Q 048785          188 FEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKG  267 (280)
Q Consensus       188 ~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~  267 (280)
                      ++++++++|+++.+|........++...+..++..+.+... ...+.+.++++++.++++++.+.+.|+++++++|++.+
T Consensus       259 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~  337 (350)
T cd08274         259 LLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGSTL-GTREVFRRLVRYIEEGEIRPVVAKTFPLSEIREAQAEF  337 (350)
T ss_pred             HHHHhccCCEEEEecccCCccccCCHHHhhhcceEEEEeec-CCHHHHHHHHHHHHCCCcccccccccCHHHHHHHHHHH
Confidence            99999999999998754322123334444556667766553 46788999999999999988888899999999999999


Q ss_pred             hcCCCcCcEEEeC
Q 048785          268 ADGHATGKIILEP  280 (280)
Q Consensus       268 ~~~~~~gkvvi~~  280 (280)
                      .++...+|+++.+
T Consensus       338 ~~~~~~~kvvi~~  350 (350)
T cd08274         338 LEKRHVGKLVLVP  350 (350)
T ss_pred             hcCCCceEEEEeC
Confidence            9888889999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=1.1e-35  Score=252.51  Aligned_cols=268  Identities=24%  Similarity=0.260  Sum_probs=209.7

Q ss_pred             CCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccc--eEEEEEeCCCCCCCCCCCEEEEeecCCCCCc
Q 048785            5 PVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDV--AGEIIEVGSEVKNFKAGYNVVAILNHFSGGG   82 (280)
Q Consensus         5 ~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~--~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~   82 (280)
                      ++|+|+++||||||+|++|||.|++...|....  ....|+++|++.  .|.+..+|+.++++++||+|+++      |+
T Consensus        31 ~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~--~~~~p~~~g~~~~g~~~~~~v~~~v~~~~vGd~V~~~------g~  102 (338)
T cd08295          31 KVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDS--LYLPPFKPGEVITGYGVAKVVDSGNPDFKVGDLVWGF------TG  102 (338)
T ss_pred             CCCCCCCCeEEEEEEEEeeCHHHHHhhccCCcc--ccCCCcCCCCeEeccEEEEEEecCCCCCCCCCEEEec------CC
Confidence            348899999999999999999999988885431  114577888754  45665678888899999999865      58


Q ss_pred             ceeEEeecc-cccccCC-CCCChh-hhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEE
Q 048785           83 LAEFAMVKE-SLTASRP-LEVSAA-EGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTAT  137 (280)
Q Consensus        83 ~~~~~~v~~-~~~~~~p-~~~~~~-~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~  137 (280)
                      |+||+++|. ..++++| +++++. ++++++++++|||+++....+                      +|+.+|++|+++
T Consensus       103 ~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~  182 (338)
T cd08295         103 WEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGS  182 (338)
T ss_pred             ceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEE
Confidence            999999999 7999995 678876 788999999999999965432                      889999999998


Q ss_pred             ec-CCcHHHHHh-cCCCeeecCCCC-C-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhH----
Q 048785          138 CG-ARNIEFVKS-LGADEVLDYKTP-D-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAML----  209 (280)
Q Consensus       138 ~~-~~~~~~~~~-~g~~~v~~~~~~-~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~----  209 (280)
                      ++ +++.+++++ +|+++++++++. + ...+....++++|++||++|+..+..++++++++|+++.+|.......    
T Consensus       183 ~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~  262 (338)
T cd08295         183 AGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVGGKMLDAVLLNMNLHGRIAACGMISQYNLEWPE  262 (338)
T ss_pred             eCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCCHHHHHHHHHHhccCcEEEEecccccCCCCCCC
Confidence            85 478888887 999999987543 3 222222334689999999999888999999999999999874332110    


Q ss_pred             -HHHHhhhhccceeeEEEEEcCC----HHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          210 -TFAWQKLTFSKKQLVPLLVIPK----GENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       210 -~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                       ......+.+++.++.++.....    .+.++++++++.+|++++.+...|+++++++|++.+.+++..||+|+++
T Consensus       263 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~GkvVl~~  338 (338)
T cd08295         263 GVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYVEDIADGLESAPEAFVGLFTGSNIGKQVVKV  338 (338)
T ss_pred             CccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEceeecccCHHHHHHHHHHHhcCCCCceEEEEC
Confidence             1122445566667766443221    3457889999999999987777899999999999999999899999874

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=2.7e-35  Score=246.31  Aligned_cols=276  Identities=39%  Similarity=0.535  Sum_probs=217.0

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCC-CCCCCccccccceEE---EEEeC-CCCCCCCCCCEEEEeec
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPIL-PRKFPYIPATDVAGE---IIEVG-SEVKNFKAGYNVVAILN   76 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~-~~~~p~~~G~e~~G~---V~~vG-~~v~~~~~Gd~V~~~~~   76 (280)
                      ++.++|.|.+++++|++.++++||.|+.+..|...+.. ...+|.+.++++.|.   +...| ..+..+..||.+.... 
T Consensus        23 ~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~~~-  101 (347)
T KOG1198|consen   23 EEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVAFL-  101 (347)
T ss_pred             ecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEeecc-
Confidence            57899999999999999999999999999999886532 114665555555554   44444 3334567777666654 


Q ss_pred             CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhh------h----------------------hhh
Q 048785           77 HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA------G----------------------LAK  128 (280)
Q Consensus        77 ~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~------~----------------------la~  128 (280)
                        ..|+|+||+++|...++++|+++++++||++|.+++|||.++....      +                      ||+
T Consensus       102 --~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk  179 (347)
T KOG1198|consen  102 --SSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAK  179 (347)
T ss_pred             --CCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHH
Confidence              7899999999999999999999999999999999999999999888      4                      999


Q ss_pred             hCC-CEEEEEecCCcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCc-
Q 048785          129 LGN-SHVTATCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTP-  205 (280)
Q Consensus       129 ~~G-~~Vi~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~-  205 (280)
                      +.| ++|+++++.++.++++++|+++++||++++ .+++....+++||+||||+|+........++...|+...++... 
T Consensus       180 ~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~~~  259 (347)
T KOG1198|consen  180 HAGAIKVVTACSKEKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLVGD  259 (347)
T ss_pred             hcCCcEEEEEcccchHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEECCCCCccccchhhhccCCceEEEEeccc
Confidence            999 588888899999999999999999999977 33444333889999999999988888888888887643332111 


Q ss_pred             --hh---h------HHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcC
Q 048785          206 --SA---M------LTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATG  274 (280)
Q Consensus       206 --~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~g  274 (280)
                        ..   .      ..........++..........+.+.++.+.+++++|+++|.+.+.||++++.+|++.+.++...|
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ie~gkikp~i~~~~p~~~~~ea~~~~~~~~~~G  339 (347)
T KOG1198|consen  260 ELANYKLDDLWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLKALVELIEKGKIKPVIDSVYPFSQAKEAFEKLEKSHATG  339 (347)
T ss_pred             cccccccccchhhhhhhhheeeeeeccceeeeeecCCHHHHHHHHHHHHcCcccCCcceeeeHHHHHHHHHHHhhcCCcc
Confidence              10   0      000111112233333434445688999999999999999999999999999999999999999999


Q ss_pred             cEEEeC
Q 048785          275 KIILEP  280 (280)
Q Consensus       275 kvvi~~  280 (280)
                      |+++.+
T Consensus       340 K~vl~~  345 (347)
T KOG1198|consen  340 KVVLEK  345 (347)
T ss_pred             eEEEEe
Confidence            999864

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=100.00  E-value=2.8e-35  Score=249.30  Aligned_cols=265  Identities=23%  Similarity=0.250  Sum_probs=207.7

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCC
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSG   80 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   80 (280)
                      ++++|.|.|+++||+||+.+++||+.|.....  ..    ..+|.++|+|++|+|++   .++.+++||+|++.      
T Consensus        23 ~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~--~~----~~~p~v~G~e~~G~V~~---~~~~~~~Gd~V~~~------   87 (329)
T cd08294          23 LVEEELPPLKDGEVLCEALFLSVDPYMRPYSK--RL----NEGDTMIGTQVAKVIES---KNSKFPVGTIVVAS------   87 (329)
T ss_pred             EEecCCCCCCCCcEEEEEEEEecCHHHhcccc--cC----CCCCcEecceEEEEEec---CCCCCCCCCEEEee------
Confidence            35789999999999999999999998765211  11    13578999999999985   44679999999874      


Q ss_pred             CcceeEEeeccc---ccccCCCCCC-----hhhhcccchhHHHHHHHHHhhhh----------------------hhhhC
Q 048785           81 GGLAEFAMVKES---LTASRPLEVS-----AAEGAGLPLAGLTALEALTQSAG----------------------LAKLG  130 (280)
Q Consensus        81 g~~~~~~~v~~~---~~~~~p~~~~-----~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~  130 (280)
                      ++|++|+.++.+   .++++|++++     ...+++++++++|||+++....+                      +|+.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~  167 (329)
T cd08294          88 FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIK  167 (329)
T ss_pred             CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHc
Confidence            478999999999   9999999988     23334678899999999865443                      88999


Q ss_pred             CCEEEEEecC-CcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchh-
Q 048785          131 NSHVTATCGA-RNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSA-  207 (280)
Q Consensus       131 G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~-  207 (280)
                      |++|++++++ ++.++++++|+++++++++.+ ...+....++++|++|||+|++.+..++++++++|+++.+|..... 
T Consensus       168 G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~  247 (329)
T cd08294         168 GCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGSISTYN  247 (329)
T ss_pred             CCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCHHHHHHHHHhhccCCEEEEEcchhccC
Confidence            9999999864 789999999999999987765 2333323347899999999998889999999999999988742210 


Q ss_pred             ---h--HHHHHhhhhccceeeEEEEEcC----CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEE
Q 048785          208 ---M--LTFAWQKLTFSKKQLVPLLVIP----KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       208 ---~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                         .  .......+.+++.++.++....    ..+.++++++++++|++++....+|+++++++|++.+.+++..||+++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gkvvv  327 (329)
T cd08294         248 DKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYREHVTEGFENMPQAFIGMLKGENTGKAIV  327 (329)
T ss_pred             CCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCCcccccCHHHHHHHHHHHHcCCCCCeEEE
Confidence               0  1122334556777777654321    134577889999999998876678999999999999999999999998


Q ss_pred             eC
Q 048785          279 EP  280 (280)
Q Consensus       279 ~~  280 (280)
                      ++
T Consensus       328 ~~  329 (329)
T cd08294         328 KV  329 (329)
T ss_pred             eC
Confidence            75

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=5.2e-35  Score=247.93  Aligned_cols=270  Identities=26%  Similarity=0.318  Sum_probs=221.0

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-----   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----   75 (280)
                      ++++|.|.++++||+||+.++++|++|+....|..+.   ..+|.++|||++|+|+++|++++.+++||+|++..     
T Consensus        15 ~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~---~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~   91 (333)
T cd08296          15 LVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPG---LSYPRVPGHEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHC   91 (333)
T ss_pred             EEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCC---CCCCcccCcceeEEEEEECCCCccCCCCCEEEeccccCCC
Confidence            3578888899999999999999999999988886532   24578999999999999999999999999998621     


Q ss_pred             --------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------
Q 048785           76 --------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------  125 (280)
Q Consensus        76 --------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------  125 (280)
                                          +....|++++|+.++.+.++++|+++++++++.+++++++||+++... +          
T Consensus        92 ~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~-~~~~~~~vlV~  170 (333)
T cd08296          92 GTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALRNS-GAKPGDLVAVQ  170 (333)
T ss_pred             CCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHHHHhc-CCCCCCEEEEE
Confidence                                011258999999999999999999999999999999999999998543 3          


Q ss_pred             -----------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCC-CCCccccccc
Q 048785          126 -----------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCAR-GIPWSTFEPN  191 (280)
Q Consensus       126 -----------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g-~~~~~~~~~~  191 (280)
                                 +|+.+|++|++++++ ++.+.++++|++++++++... ...+...  +++|++||++| +..+..++++
T Consensus       171 g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~--~~~d~vi~~~g~~~~~~~~~~~  248 (333)
T cd08296         171 GIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQEL--GGAKLILATAPNAKAISALVGG  248 (333)
T ss_pred             CCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhc--CCCCEEEECCCchHHHHHHHHH
Confidence                       889999999999865 788999999999999887654 2222222  36999999987 4568889999


Q ss_pred             ccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCC
Q 048785          192 LAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGH  271 (280)
Q Consensus       192 l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~  271 (280)
                      ++++|+++.+|.... ...+....+..++.++.+.. ....+++..+++++.++++++.+ +.|+++++.+||+.+.+++
T Consensus       249 l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~l~~~v-~~~~~~~~~~a~~~~~~~~  325 (333)
T cd08296         249 LAPRGKLLILGAAGE-PVAVSPLQLIMGRKSIHGWP-SGTALDSEDTLKFSALHGVRPMV-ETFPLEKANEAYDRMMSGK  325 (333)
T ss_pred             cccCCEEEEEecCCC-CCCcCHHHHhhcccEEEEeC-cCCHHHHHHHHHHHHhCCCCceE-EEEEHHHHHHHHHHHHCCC
Confidence            999999999986542 22333444556777777765 34567889999999999998775 5899999999999999999


Q ss_pred             CcCcEEEe
Q 048785          272 ATGKIILE  279 (280)
Q Consensus       272 ~~gkvvi~  279 (280)
                      ..||+|++
T Consensus       326 ~~gk~v~~  333 (333)
T cd08296         326 ARFRVVLT  333 (333)
T ss_pred             CceeEEeC
Confidence            99999875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=1.3e-34  Score=246.33  Aligned_cols=275  Identities=28%  Similarity=0.339  Sum_probs=220.8

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec-----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN-----   76 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-----   76 (280)
                      .+++.|.+.++||+|++.++++|++|+....|..+...+..+|.++|+|++|+|+++|+++..+++||+|++...     
T Consensus        16 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~   95 (340)
T cd05284          16 EDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGT   95 (340)
T ss_pred             EeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCcCCCEEEEcCCCCCCC
Confidence            467888899999999999999999999988887653234466889999999999999999999999999987531     


Q ss_pred             -------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhh-h-----------
Q 048785           77 -------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA-G-----------  125 (280)
Q Consensus        77 -------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~-~-----------  125 (280)
                                         ....|+|++|+.++.+.++++|+++++++++++++.++|||+++.... .           
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g  175 (340)
T cd05284          96 CRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIG  175 (340)
T ss_pred             ChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEc
Confidence                               113689999999999999999999999999999999999999986542 1           


Q ss_pred             ----------hhhhCC-CEEEEEec-CCcHHHHHhcCCCeeecCCCCCcc-cccCCCCCcccEEEECCCC-CCccccccc
Q 048785          126 ----------LAKLGN-SHVTATCG-ARNIEFVKSLGADEVLDYKTPDGA-ALKSPSGRKYDAVIHCARG-IPWSTFEPN  191 (280)
Q Consensus       126 ----------la~~~G-~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~-~~~~~~~~~~d~v~d~~g~-~~~~~~~~~  191 (280)
                                +|+.+| ++|+++++ +++.+.++++|++++++++..... ....+.++++|+++||+|+ ..+..++++
T Consensus       176 ~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~  255 (340)
T cd05284         176 VGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGSDETLALAAKL  255 (340)
T ss_pred             CcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHH
Confidence                      788888 79998885 478888899999999887654212 2233455689999999997 558889999


Q ss_pred             ccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCC
Q 048785          192 LAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGH  271 (280)
Q Consensus       192 l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~  271 (280)
                      ++++|+++.+|....  ..+.......++..+.+.. ....+.+..+++++++|.+++ ..+.|+++++++|++.+.+++
T Consensus       256 l~~~g~~i~~g~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~g~l~~-~~~~~~~~~~~~a~~~~~~~~  331 (340)
T cd05284         256 LAKGGRYVIVGYGGH--GRLPTSDLVPTEISVIGSL-WGTRAELVEVVALAESGKVKV-EITKFPLEDANEALDRLREGR  331 (340)
T ss_pred             hhcCCEEEEEcCCCC--CccCHHHhhhcceEEEEEe-cccHHHHHHHHHHHHhCCCCc-ceEEEeHHHHHHHHHHHHcCC
Confidence            999999999875432  1111222234666666554 235678899999999999886 445799999999999999999


Q ss_pred             CcCcEEEeC
Q 048785          272 ATGKIILEP  280 (280)
Q Consensus       272 ~~gkvvi~~  280 (280)
                      ..||+++.+
T Consensus       332 ~~gkvv~~~  340 (340)
T cd05284         332 VTGRAVLVP  340 (340)
T ss_pred             ccceEEecC
Confidence            899999864

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=100.00  E-value=3e-34  Score=242.46  Aligned_cols=276  Identities=25%  Similarity=0.324  Sum_probs=218.9

Q ss_pred             CCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCCc
Q 048785            3 HVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGG   82 (280)
Q Consensus         3 ~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~   82 (280)
                      +.+.|.+.++||+|++.++++|++|+....|..+.......|.++|||++|+|+++|++++.+++||+|++..+ ...|+
T Consensus        19 ~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-~~~g~   97 (324)
T cd08244          19 DVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDPAWLGRRVVAHTG-RAGGG   97 (324)
T ss_pred             ccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCCCCCCCEEEEccC-CCCce
Confidence            55666788999999999999999999988876542222345788999999999999999999999999998631 13789


Q ss_pred             ceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEecC
Q 048785           83 LAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCGA  140 (280)
Q Consensus        83 ~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~~  140 (280)
                      |++|+.++.+.++++|+++++++++++++.++|||..+ ...+                      +|+.+|++|++++++
T Consensus        98 ~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~~-~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~  176 (324)
T cd08244          98 YAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGLL-DLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGG  176 (324)
T ss_pred             eeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHHHH-HhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            99999999999999999999999999999999996543 3322                      889999999999964


Q ss_pred             -CcHHHHHhcCCCeeecCCCCC-c-ccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhhh
Q 048785          141 -RNIEFVKSLGADEVLDYKTPD-G-AALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLT  217 (280)
Q Consensus       141 -~~~~~~~~~g~~~v~~~~~~~-~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~  217 (280)
                       ++.+.++++|++.++++++.. . .......++++|+++||+|+.....++++++++|+++.+|..+.....+......
T Consensus       177 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~  256 (324)
T cd08244         177 PAKTALVRALGADVAVDYTRPDWPDQVREALGGGGVTVVLDGVGGAIGRAALALLAPGGRFLTYGWASGEWTALDEDDAR  256 (324)
T ss_pred             HHHHHHHHHcCCCEEEecCCccHHHHHHHHcCCCCceEEEECCChHhHHHHHHHhccCcEEEEEecCCCCCCccCHHHHh
Confidence             778888899998888876655 2 2333456678999999999988889999999999999998544322122222223


Q ss_pred             ccceeeEEEEEcC-----CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          218 FSKKQLVPLLVIP-----KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       218 ~~~~~~~~~~~~~-----~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      .++..+.+.....     ..+.+.+++++++++.+.+.+...|+++++++|++.+.++...+|+++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  324 (324)
T cd08244         257 RRGVTVVGLLGVQAERGGLRALEARALAEAAAGRLVPVVGQTFPLERAAEAHAALEARSTVGKVLLLP  324 (324)
T ss_pred             hCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCCccCccceEEeHHHHHHHHHHHHcCCCCceEEEeC
Confidence            4555555443311     24567888999999999887878999999999999999999999999875

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=3e-34  Score=243.64  Aligned_cols=270  Identities=21%  Similarity=0.291  Sum_probs=221.2

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-----   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----   75 (280)
                      +++++.|+++++||+||+.++++|++|+....|...   ...+|.++|||++|+|+++|++++.+++||+|+...     
T Consensus        14 ~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~---~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   90 (337)
T cd05283          14 PFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWG---PTKYPLVPGHEIVGIVVAVGSKVTKFKVGDRVGVGCQVDSC   90 (337)
T ss_pred             EEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcC---CCCCCcccCcceeeEEEEECCCCcccCCCCEEEEecCCCCC
Confidence            357899999999999999999999999999888753   235688999999999999999999999999997320     


Q ss_pred             ---------------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh---
Q 048785           76 ---------------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG---  125 (280)
Q Consensus        76 ---------------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~---  125 (280)
                                                 +....|+|++|+.++.+.++++|+++++++++.+++.+.+||+++.+..-   
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~g  170 (337)
T cd05283          91 GTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKRNGVGPG  170 (337)
T ss_pred             CCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHHHHHHHhcCCCCC
Confidence                                       11246899999999999999999999999999999999999999855311   


Q ss_pred             -----------------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCC-cc
Q 048785          126 -----------------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIP-WS  186 (280)
Q Consensus       126 -----------------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~~  186 (280)
                                       +++.+|++|++++++ ++.++++++|++.+++.+......   ..++++|++|||+++.. +.
T Consensus       171 ~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~---~~~~~~d~v~~~~g~~~~~~  247 (337)
T cd05283         171 KRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMK---KAAGSLDLIIDTVSASHDLD  247 (337)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhh---hccCCceEEEECCCCcchHH
Confidence                             888899999998865 788888899999988765543211   12467999999999875 88


Q ss_pred             cccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHH
Q 048785          187 TFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAK  266 (280)
Q Consensus       187 ~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~  266 (280)
                      .++++++++|+++.+|...... .++...+..++.++.+... ...+.++.+++++.++++++.+ +.|+++++++||+.
T Consensus       248 ~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~a~~~  324 (337)
T cd05283         248 PYLSLLKPGGTLVLVGAPEEPL-PVPPFPLIFGRKSVAGSLI-GGRKETQEMLDFAAEHGIKPWV-EVIPMDGINEALER  324 (337)
T ss_pred             HHHHHhcCCCEEEEEeccCCCC-ccCHHHHhcCceEEEEecc-cCHHHHHHHHHHHHhCCCccce-EEEEHHHHHHHHHH
Confidence            9999999999999998544321 2333444557778777664 4678899999999999998765 68999999999999


Q ss_pred             HhcCCCcCcEEEe
Q 048785          267 GADGHATGKIILE  279 (280)
Q Consensus       267 ~~~~~~~gkvvi~  279 (280)
                      +.+++..||+|++
T Consensus       325 ~~~~~~~~k~v~~  337 (337)
T cd05283         325 LEKGDVRYRFVLD  337 (337)
T ss_pred             HHcCCCcceEeeC
Confidence            9999999999874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=1.3e-34  Score=250.63  Aligned_cols=277  Identities=24%  Similarity=0.271  Sum_probs=219.8

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCC------CC-CCCccccccceEEEEEeCCCCCCCCCCCEEEEe
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPIL------PR-KFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI   74 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~------~~-~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   74 (280)
                      +++|.|.++++||+|++.+++||.+|+....|......      +. ..+.++|||++|+|+++|++++.+++||+|++.
T Consensus        33 ~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~  112 (393)
T cd08246          33 EDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDASGIVWAVGEGVKNWKVGDEVVVH  112 (393)
T ss_pred             eecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccceEEEEEEeCCCCCcCCCCCEEEEe
Confidence            56788999999999999999999999988776521100      00 123588999999999999999999999999875


Q ss_pred             ec-------------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhh--hh--
Q 048785           75 LN-------------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS--AG--  125 (280)
Q Consensus        75 ~~-------------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~--~~--  125 (280)
                      ..                         ....|+|++|+.++...++++|+++++++++.++..+.|||+++...  ++  
T Consensus       113 ~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~  192 (393)
T cd08246         113 CSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVK  192 (393)
T ss_pred             ccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCC
Confidence            31                         01358999999999999999999999999999999999999998543  22  


Q ss_pred             --------------------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCCCC-----------------------
Q 048785          126 --------------------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPD-----------------------  161 (280)
Q Consensus       126 --------------------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~-----------------------  161 (280)
                                          +|+.+|++++++++ +++.+.++++|+++++++++.+                       
T Consensus       193 ~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (393)
T cd08246         193 PGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRF  272 (393)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchH
Confidence                                88999998888875 4788999999999999875431                       


Q ss_pred             -cccccCCCCC-cccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHH
Q 048785          162 -GAALKSPSGR-KYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLV  239 (280)
Q Consensus       162 -~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (280)
                       ....+.++++ ++|++|||+|+..+..++++++++|+++.+|........+....+..++.++.+.. ....+++..++
T Consensus       273 ~~~v~~l~~~~~g~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g~~-~~~~~~~~~~~  351 (393)
T cd08246         273 GKAIWDILGGREDPDIVFEHPGRATFPTSVFVCDRGGMVVICAGTTGYNHTYDNRYLWMRQKRIQGSH-FANDREAAEAN  351 (393)
T ss_pred             HHHHHHHhCCCCCCeEEEECCchHhHHHHHHHhccCCEEEEEcccCCCCCCCcHHHHhhheeEEEecc-cCcHHHHHHHH
Confidence             0112334555 79999999998778899999999999999985433222233444555666666654 23567889999


Q ss_pred             HHHHCCCeeEeccceecchhHHHHHHHHhcC-CCcCcEEEe
Q 048785          240 KLLKEGKIKTLIDSKHLLSKAEDAWAKGADG-HATGKIILE  279 (280)
Q Consensus       240 ~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~-~~~gkvvi~  279 (280)
                      ++++++.+.+.++++|+++++++|++.+.++ ...||+++-
T Consensus       352 ~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~~gkvvv~  392 (393)
T cd08246         352 RLVMKGRIDPCLSKVFSLDETPDAHQLMHRNQHHVGNMAVL  392 (393)
T ss_pred             HHHHcCCceeeeeEEEeHHHHHHHHHHHHhCccccceEEEe
Confidence            9999999988888899999999999999988 788899874

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=1.4e-34  Score=247.00  Aligned_cols=275  Identities=23%  Similarity=0.260  Sum_probs=215.5

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec-----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN-----   76 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-----   76 (280)
                      +++|.|.+.++||+||+.++++|++|+....|....   ..+|.++|||++|+|+++|++++.+++||+|++...     
T Consensus        15 ~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~---~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~   91 (351)
T cd08285          15 IEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPG---ERHGMILGHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWR   91 (351)
T ss_pred             EECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCC---CCCCcccCcceEEEEEEecCCcCccCCCCEEEEcCcCCCCC
Confidence            577888899999999999999999999988776532   356789999999999999999999999999987320     


Q ss_pred             ----------------------CCCCCcceeEEeeccc--ccccCCCCCChhhhcccchhHHHHHHHHHhhhh-------
Q 048785           77 ----------------------HFSGGGLAEFAMVKES--LTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-------  125 (280)
Q Consensus        77 ----------------------~~~~g~~~~~~~v~~~--~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-------  125 (280)
                                            ....|+|++|+.+|.+  .++++|++++++++++++..++|||+++.. ++       
T Consensus        92 c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~~~~-~~~~~g~~v  170 (351)
T cd08285          92 SVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFHGAEL-ANIKLGDTV  170 (351)
T ss_pred             CHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhHHHHHHc-cCCCCCCEE
Confidence                                  1136899999999974  899999999999999999899999998642 22       


Q ss_pred             --------------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCC-Ccc
Q 048785          126 --------------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGI-PWS  186 (280)
Q Consensus       126 --------------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~-~~~  186 (280)
                                    +|+.+|+ .|++++++ ++.+.++++|++.++++++.+  ......+.++++|++|||+|+. .+.
T Consensus       171 lI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~  250 (351)
T cd08285         171 AVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGGQDTFE  250 (351)
T ss_pred             EEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCCHHHHH
Confidence                          8899999 68888865 788888999999999887654  2233345567899999999975 578


Q ss_pred             cccccccCCcEEEEeCCCchh-hHHHH--HhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeE---eccceecchhH
Q 048785          187 TFEPNLAENGKVIDLTPTPSA-MLTFA--WQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT---LIDSKHLLSKA  260 (280)
Q Consensus       187 ~~~~~l~~~g~~v~~g~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~---~~~~~~~~~~~  260 (280)
                      .++++++++|+++.+|..... ...+.  ......+..++.+.......++++++++++++|++++   .+.+.|+++++
T Consensus       251 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~  330 (351)
T cd08285         251 QALKVLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCPGGRLRMERLASLIEYGRVDPSKLLTHHFFGFDDI  330 (351)
T ss_pred             HHHHHhhcCCEEEEecccCCCceeecChhhhhhhccccEEEEeecCCccccHHHHHHHHHcCCCChhhceeccccCHHHH
Confidence            999999999999998754421 11111  1112234444554333335678999999999999987   44567999999


Q ss_pred             HHHHHHHhcCC-CcCcEEEeC
Q 048785          261 EDAWAKGADGH-ATGKIILEP  280 (280)
Q Consensus       261 ~~a~~~~~~~~-~~gkvvi~~  280 (280)
                      ++||+.+.+++ ...|++|++
T Consensus       331 ~~a~~~~~~~~~~~~k~~~~~  351 (351)
T cd08285         331 EEALMLMKDKPDDLIKPVIIF  351 (351)
T ss_pred             HHHHHHHhcccCCeEEEEEeC
Confidence            99999999887 468999864

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=3.6e-34  Score=243.21  Aligned_cols=275  Identities=28%  Similarity=0.352  Sum_probs=211.4

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      .|+|.|+++++||+||+.++++|+.|.....|..+.   ..+|.++|+|++|+|+++|++++.+++||+|+++......|
T Consensus        20 ~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   96 (336)
T TIGR02817        20 IDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPE---AGQPKILGWDAAGVVVAVGDEVTLFKPGDEVWYAGDIDRPG   96 (336)
T ss_pred             cccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCC---CCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEcCCCCCCC
Confidence            578889999999999999999999999988776532   24678999999999999999999999999999864333469


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhh---------h------------------hhhhC-CCE
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA---------G------------------LAKLG-NSH  133 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~---------~------------------la~~~-G~~  133 (280)
                      +|++|+.++.+.++++|++++++++++++++++|||+++....         +                  +|+.+ |++
T Consensus        97 ~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~  176 (336)
T TIGR02817        97 SNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLT  176 (336)
T ss_pred             cccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCE
Confidence            9999999999999999999999999999999999999984421         2                  78887 999


Q ss_pred             EEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCC-CCcccccccccCCcEEEEeCCCchhhH-H
Q 048785          134 VTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARG-IPWSTFEPNLAENGKVIDLTPTPSAML-T  210 (280)
Q Consensus       134 Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~g~~v~~g~~~~~~~-~  210 (280)
                      |+++++ +++.+.++++|++++++++......+....++++|+++||+++ ..+...+++++++|+++.++....... .
T Consensus       177 vi~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~  256 (336)
T TIGR02817       177 VIATASRPESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQGRFALIDDPAELDISP  256 (336)
T ss_pred             EEEEcCcHHHHHHHHHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEcCCcHHHHHHHHHHhccCCEEEEEcccccccchh
Confidence            999986 4788888999999999865422233333455689999999864 568899999999999998863321111 1


Q ss_pred             HHHhhhhccceeeE-EEEE-cC----CHHHHHHHHHHHHCCCeeEeccceec---chhHHHHHHHHhcCCCcCcEEEe
Q 048785          211 FAWQKLTFSKKQLV-PLLV-IP----KGENLVFLVKLLKEGKIKTLIDSKHL---LSKAEDAWAKGADGHATGKIILE  279 (280)
Q Consensus       211 ~~~~~~~~~~~~~~-~~~~-~~----~~~~~~~~~~~i~~g~~~~~~~~~~~---~~~~~~a~~~~~~~~~~gkvvi~  279 (280)
                      +..++..+....+. .... ..    ..+.++++++++.++.+++.+.+.++   ++++++|++.+.+++..||++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  334 (336)
T TIGR02817       257 FKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRTTLAETFGTINAANLKRAHALIESGKARGKIVLE  334 (336)
T ss_pred             hhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHHCCCeeccchhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence            11122222221111 0000 01    12467889999999999887665664   68999999999999888999874

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=100.00  E-value=1.9e-34  Score=227.05  Aligned_cols=268  Identities=23%  Similarity=0.249  Sum_probs=210.0

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccc----eEEEEEeCCCCCCCCCCCEEEEeec
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDV----AGEIIEVGSEVKNFKAGYNVVAILN   76 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~----~G~V~~vG~~v~~~~~Gd~V~~~~~   76 (280)
                      ++|+++|.|+++|||||+.|.+++|.    ++|++.....-..|.-+|-..    +|+|++  |+..+|++||.|++.. 
T Consensus        29 lee~~vp~p~~GqvLl~~~ylS~DPy----mRgrm~d~~SY~~P~~lG~~~~gg~V~~Vv~--S~~~~f~~GD~V~~~~-  101 (340)
T COG2130          29 LEEVDVPEPGEGQVLLRTLYLSLDPY----MRGRMSDAPSYAPPVELGEVMVGGTVAKVVA--SNHPGFQPGDIVVGVS-  101 (340)
T ss_pred             eEeccCCCCCcCceEEEEEEeccCHH----HeecccCCcccCCCcCCCceeECCeeEEEEe--cCCCCCCCCCEEEecc-
Confidence            47899999999999999999999993    344443211113455666555    455555  6677899999999874 


Q ss_pred             CCCCCcceeEEeecccccccCCCCCChhhh--cccchhHHHHHHHHHhhhh----------------------hhhhCCC
Q 048785           77 HFSGGGLAEFAMVKESLTASRPLEVSAAEG--AGLPLAGLTALEALTQSAG----------------------LAKLGNS  132 (280)
Q Consensus        77 ~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a--a~~~~~~~~a~~~l~~~~~----------------------la~~~G~  132 (280)
                           +|++|..++.+.+.|+++..-+..+  ..+..++.|||.+|.+..+                      |||..|+
T Consensus       102 -----GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~  176 (340)
T COG2130         102 -----GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC  176 (340)
T ss_pred             -----cceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC
Confidence                 7999999999999999765433333  2345677899999988766                      9999999


Q ss_pred             EEEEEec-CCcHHHHHh-cCCCeeecCCCCC-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCc----
Q 048785          133 HVTATCG-ARNIEFVKS-LGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTP----  205 (280)
Q Consensus       133 ~Vi~~~~-~~~~~~~~~-~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~----  205 (280)
                      +|+++++ ++|.+++.+ +|.|.++||+..+ .+.+...+++++|++||++|++.++.++..|+.++|+..+|.-+    
T Consensus       177 rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeNVGg~v~DAv~~~ln~~aRi~~CG~IS~YN~  256 (340)
T COG2130         177 RVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGAISQYNA  256 (340)
T ss_pred             eEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCeEEEEEcCCchHHHHHHHhhccccceeeeeehhhcCC
Confidence            9999995 689999987 9999999999988 55666678899999999999999999999999999999998322    


Q ss_pred             --hhhHHHHHhhhhccceeeEEEEEcC-----CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEE
Q 048785          206 --SAMLTFAWQKLTFSKKQLVPLLVIP-----KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       206 --~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                        ..........+..++.++.++....     ..+..+++..|+++|+|+...+-+-.|+++|+||.-|.+++++||+|+
T Consensus       257 ~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~eti~dGlEnaP~Af~gLl~G~N~GK~vv  336 (340)
T COG2130         257 PELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRETIVDGLENAPEAFIGLLSGKNFGKLVV  336 (340)
T ss_pred             CCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEeeehhhhhccHHHHHHHhcCCccceEEE
Confidence              1111222334444577777776522     236788999999999999877766779999999999999999999999


Q ss_pred             eC
Q 048785          279 EP  280 (280)
Q Consensus       279 ~~  280 (280)
                      ++
T Consensus       337 Kv  338 (340)
T COG2130         337 KV  338 (340)
T ss_pred             Ee
Confidence            75

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=100.00  E-value=4.9e-34  Score=242.85  Aligned_cols=277  Identities=26%  Similarity=0.309  Sum_probs=217.7

Q ss_pred             CCCCCCCCCCC-CeEEEEEeeeecChhhHHhHhccCCCCCC--CCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC
Q 048785            1 HVHVPVPTPRK-DEVLLKVEASSLNAFDWKIKKGVARPILP--RKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH   77 (280)
Q Consensus         1 ~~~~~~~~~~~-~evlV~v~~~~i~~~d~~~~~g~~~~~~~--~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~   77 (280)
                      +++.|.|++.+ +||+||+.++++|++|+....|..+....  ..+|.++|||++|+|+++|++++.+++||+|++... 
T Consensus        18 ~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-   96 (341)
T cd08290          18 LESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPLRP-   96 (341)
T ss_pred             EeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCCCCCCCCCCCEEEecCC-
Confidence            35778888887 99999999999999999988887542100  125679999999999999999999999999998631 


Q ss_pred             CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEE
Q 048785           78 FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVT  135 (280)
Q Consensus        78 ~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi  135 (280)
                       ..|+|++|+.++.+.++++|+++++++++++++.+.|||+++.....                      +|+..|++|+
T Consensus        97 -~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~  175 (341)
T cd08290          97 -GLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTI  175 (341)
T ss_pred             -CCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCCeEE
Confidence             25899999999999999999999999999999999999999865422                      8899999999


Q ss_pred             EEecC-----CcHHHHHhcCCCeeecCCCC---C-cccc-cCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCc
Q 048785          136 ATCGA-----RNIEFVKSLGADEVLDYKTP---D-GAAL-KSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTP  205 (280)
Q Consensus       136 ~~~~~-----~~~~~~~~~g~~~v~~~~~~---~-~~~~-~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~  205 (280)
                      +++++     ++.+.++++|++++++++..   . ...+ ....+ ++|++|||+|+..+..++++++++|+++.+|...
T Consensus       176 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~-~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~  254 (341)
T cd08290         176 NVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAPGG-RPKLALNCVGGKSATELARLLSPGGTMVTYGGMS  254 (341)
T ss_pred             EEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHcCC-CceEEEECcCcHhHHHHHHHhCCCCEEEEEeccC
Confidence            88854     45778888999999987764   3 2222 23344 7999999999988888999999999999987433


Q ss_pred             hhhHHHHHhhhhccceeeEEEEEcC---------CHHHHHHHHHHHHCCCeeEecccee---cchhHHHHHHHHhcCCCc
Q 048785          206 SAMLTFAWQKLTFSKKQLVPLLVIP---------KGENLVFLVKLLKEGKIKTLIDSKH---LLSKAEDAWAKGADGHAT  273 (280)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~i~~g~~~~~~~~~~---~~~~~~~a~~~~~~~~~~  273 (280)
                      .....+.......++..+.+.....         ..+.++.+++++.+|++.+....++   +++++++|++.+.++...
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  334 (341)
T cd08290         255 GQPVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAPPVEKVTDDPLEEFKDALANALKGGGG  334 (341)
T ss_pred             CCCcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCCcccccccCCHHHHHHHHHHHhhcCCC
Confidence            2222222223344566666554311         1235788899999999987666667   999999999999999989


Q ss_pred             CcEEEeC
Q 048785          274 GKIILEP  280 (280)
Q Consensus       274 gkvvi~~  280 (280)
                      +|+++++
T Consensus       335 ~k~v~~~  341 (341)
T cd08290         335 GKQVLVM  341 (341)
T ss_pred             CeEEEeC
Confidence            9999874

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3.9e-34  Score=245.67  Aligned_cols=274  Identities=26%  Similarity=0.370  Sum_probs=219.4

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCC---CCCCCEEEEeecC-
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKN---FKAGYNVVAILNH-   77 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~---~~~Gd~V~~~~~~-   77 (280)
                      ++.|.|.++++||+|++.++++|++|+....|..+    ..+|.++|||++|+|+++|+++++   +++||+|++.... 
T Consensus        16 ~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~----~~~p~~~g~e~~G~v~~vG~~~~~~~~~~~Gd~V~~~~~~~   91 (367)
T cd08263          16 EEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELP----FPPPFVLGHEISGEVVEVGPNVENPYGLSVGDRVVGSFIMP   91 (367)
T ss_pred             EEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCC----CCCCcccccccceEEEEeCCCCCCCCcCCCCCEEEEcCCCC
Confidence            46788889999999999999999999998887664    256789999999999999999988   9999999873100 


Q ss_pred             ---------------------------------------------CCCCcceeEEeecccccccCCCCCChhhhcccchh
Q 048785           78 ---------------------------------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLA  112 (280)
Q Consensus        78 ---------------------------------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~  112 (280)
                                                                   ...|++++|+.++.+.++++|+++++.++++++++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~~is~~~aa~l~~~  171 (367)
T cd08263          92 CGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCA  171 (367)
T ss_pred             CCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhhEEECCCCCCHHHHhHhcch
Confidence                                                         13589999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhh---------------------hhhhCCCE-EEEEec-CCcHHHHHhcCCCeeecCCCCC-c-ccccC
Q 048785          113 GLTALEALTQSAG---------------------LAKLGNSH-VTATCG-ARNIEFVKSLGADEVLDYKTPD-G-AALKS  167 (280)
Q Consensus       113 ~~~a~~~l~~~~~---------------------la~~~G~~-Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~-~-~~~~~  167 (280)
                      ++|||+++.....                     +|+.+|++ |+++++ +++.+.++++|++.+++++... . .....
T Consensus       172 ~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~  251 (367)
T cd08263         172 GFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREI  251 (367)
T ss_pred             HHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHH
Confidence            9999999865432                     88899996 888875 4778888889999999887655 2 23334


Q ss_pred             CCCCcccEEEECCCCC-CcccccccccCCcEEEEeCCCchh-hHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCC
Q 048785          168 PSGRKYDAVIHCARGI-PWSTFEPNLAENGKVIDLTPTPSA-MLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEG  245 (280)
Q Consensus       168 ~~~~~~d~v~d~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g  245 (280)
                      ..++++|++|||+++. .+..++++++++|+++.++..... ...+....+..++..+.+......++.++.++++++++
T Consensus       252 ~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  331 (367)
T cd08263         252 TGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIGSYGARPRQDLPELVGLAASG  331 (367)
T ss_pred             hCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCCCccccCHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHcC
Confidence            4567899999999997 788899999999999999754321 11222233334555555533222357899999999999


Q ss_pred             CeeEe--ccceecchhHHHHHHHHhcCCCcCcEEEe
Q 048785          246 KIKTL--IDSKHLLSKAEDAWAKGADGHATGKIILE  279 (280)
Q Consensus       246 ~~~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  279 (280)
                      .+.+.  +++.++++++.++++.+.+++..||+|++
T Consensus       332 ~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~  367 (367)
T cd08263         332 KLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE  367 (367)
T ss_pred             CCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence            98763  67889999999999999999888999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=100.00  E-value=1.6e-33  Score=237.87  Aligned_cols=273  Identities=24%  Similarity=0.339  Sum_probs=218.8

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      ++.|.|.+++++|+||+.++++|+.|+..+.|....  ...+|.++|+|++|+|+++|++++.+++||+|++..   ..|
T Consensus        17 ~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~---~~g   91 (323)
T cd05282          17 VSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGS--RPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLG---GEG   91 (323)
T ss_pred             EeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCC--CCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeC---CCC
Confidence            466788899999999999999999999988776542  124578999999999999999999999999999863   168


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEec
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCG  139 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~  139 (280)
                      +|++|+.++.+.++++|+++++.+++.+++.+++||+++.....                      +|+.+|++++++++
T Consensus        92 ~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~  171 (323)
T cd05282          92 TWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVR  171 (323)
T ss_pred             cceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEec
Confidence            99999999999999999999999999999999999999865432                      88999999998885


Q ss_pred             -CCcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhh
Q 048785          140 -ARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKL  216 (280)
Q Consensus       140 -~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  216 (280)
                       +++.+.++++|++++++++...  ......+.++++|++|||+|+......+++++++|+++.+|........+....+
T Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  251 (323)
T cd05282         172 RDEQVEELKALGADEVIDSSPEDLAQRVKEATGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLLSGEPVPFPRSVF  251 (323)
T ss_pred             ChHHHHHHHhcCCCEEecccchhHHHHHHHHhcCCCceEEEECCCCHHHHHHHHhhCCCCEEEEEccCCCCCCCCCHHHH
Confidence             4788888899999999887644  2233456677899999999998878889999999999998754332111122222


Q ss_pred             hccceeeEEEEEcC---------CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEe
Q 048785          217 TFSKKQLVPLLVIP---------KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILE  279 (280)
Q Consensus       217 ~~~~~~~~~~~~~~---------~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  279 (280)
                      ..++..+.+.....         ..+.+.++++++.++++.+.+.+.|+++++++||+.+.++...+|++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  323 (323)
T cd05282         252 IFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLEDFEEAVAAAEQPGRGGKVLLT  323 (323)
T ss_pred             hhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCcccCccceecHHHHHHHHHHHhcCCCCceEeeC
Confidence            22445544443311         1246788899999999988778899999999999999988888899874

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=100.00  E-value=2.4e-33  Score=237.04  Aligned_cols=274  Identities=22%  Similarity=0.259  Sum_probs=212.1

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee---cCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL---NHF   78 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~---~~~   78 (280)
                      +++|.|.++++||+|++.++++|++|+....|..+.  ...+|.++|||++|+|+++  +++.+++||+|++..   +..
T Consensus        18 ~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~--~~~~~~~Gd~V~~~~~~~g~~   93 (325)
T cd05280          18 RTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGV--TRNYPHTPGIDAAGTVVSS--DDPRFREGDEVLVTGYDLGMN   93 (325)
T ss_pred             EeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCC--CCCCCCccCcccEEEEEEe--CCCCCCCCCEEEEcccccCCC
Confidence            578889999999999999999999999988887532  2245779999999999998  456799999999752   122


Q ss_pred             CCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhh--------h-----------------hhhhCCCE
Q 048785           79 SGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA--------G-----------------LAKLGNSH  133 (280)
Q Consensus        79 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~--------~-----------------la~~~G~~  133 (280)
                      ..|+|++|+.+|.+.++++|+++++++++.+++.+.+||+++....        +                 +|+.+|++
T Consensus        94 ~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~  173 (325)
T cd05280          94 TDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGYT  173 (325)
T ss_pred             CCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCCE
Confidence            3689999999999999999999999999999999999999875421        1                 88999999


Q ss_pred             EEEEecC-CcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHH
Q 048785          134 VTATCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFA  212 (280)
Q Consensus       134 Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~  212 (280)
                      |++++++ ++.+.++++|+++++++++..........++++|++|||+|+..+..++++++++|+++.+|........+.
T Consensus       174 v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~  253 (325)
T cd05280         174 VVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGGDVLANLLKQTKYGGVVASCGNAAGPELTTT  253 (325)
T ss_pred             EEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCchHHHHHHHHhhcCCCEEEEEecCCCCccccc
Confidence            9988864 788888999999998876532222233445579999999999889999999999999999985432211222


Q ss_pred             HhhhhccceeeEEEEEcC-----CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          213 WQKLTFSKKQLVPLLVIP-----KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ...+..++..+.+.....     ..+.++.+.+++..+ +.+.+..+|+++++++|++.+.+++..||+++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~  325 (325)
T cd05280         254 VLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWKPD-LLEIVVREISLEELPEAIDRLLAGKHRGRTVVKI  325 (325)
T ss_pred             cchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHhcC-CccceeeEecHHHHHHHHHHHhcCCcceEEEEeC
Confidence            333335666666644321     123445555566666 4445778999999999999999999999999874

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=4.9e-33  Score=233.10  Aligned_cols=262  Identities=27%  Similarity=0.329  Sum_probs=211.9

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      ++.|.|.++++||+||+.++++|+.|+....+.       ..|.++|+|++|+|+++|++++.+++||+|+++.   ..|
T Consensus        17 ~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~-------~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~---~~g   86 (305)
T cd08270          17 GEVPDPQPAPHEALVRVAAISLNRGELKFAAER-------PDGAVPGWDAAGVVERAAADGSGPAVGARVVGLG---AMG   86 (305)
T ss_pred             EecCCCCCCCCEEEEEEEEEecCHHHHHhhccC-------CCCCcccceeEEEEEEeCCCCCCCCCCCEEEEec---CCc
Confidence            467888899999999999999999999876521       2356899999999999999999999999999874   379


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCCEEEEEecC
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNSHVTATCGA  140 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~~Vi~~~~~  140 (280)
                      +|++|+.++.+.++++|+++++++++++++.+.|||+++.....                     +++.+|++|++++++
T Consensus        87 ~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~  166 (305)
T cd08270          87 AWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGS  166 (305)
T ss_pred             ceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCC
Confidence            99999999999999999999999999999999999999855421                     888999999999864


Q ss_pred             -CcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhhhc-
Q 048785          141 -RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTF-  218 (280)
Q Consensus       141 -~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~-  218 (280)
                       ++.+.++++|++.++....      . ..++++|+++||+|+..+..++++++++|+++.+|........+....+.. 
T Consensus       167 ~~~~~~~~~~g~~~~~~~~~------~-~~~~~~d~vl~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~  239 (305)
T cd08270         167 PARAEGLRELGAAEVVVGGS------E-LSGAPVDLVVDSVGGPQLARALELLAPGGTVVSVGSSSGEPAVFNPAAFVGG  239 (305)
T ss_pred             HHHHHHHHHcCCcEEEeccc------c-ccCCCceEEEECCCcHHHHHHHHHhcCCCEEEEEeccCCCcccccHHHHhcc
Confidence             7888898899876654322      1 122479999999999888999999999999999985432212222222222 


Q ss_pred             -cceeeEEEEEc---CCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          219 -SKKQLVPLLVI---PKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       219 -~~~~~~~~~~~---~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                       ++..+.+....   ...+.+..++++++++++++.+.++++++++++|++.+.++...||+++.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  305 (305)
T cd08270         240 GGGRRLYTFFLYDGEPLAADLARLLGLVAAGRLDPRIGWRGSWTEIDEAAEALLARRFRGKAVLDV  305 (305)
T ss_pred             cccceEEEEEccCHHHHHHHHHHHHHHHHCCCccceeccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence             35555554432   124678889999999999987778999999999999999998889999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=1.6e-33  Score=242.99  Aligned_cols=274  Identities=22%  Similarity=0.204  Sum_probs=215.4

Q ss_pred             CCCCCCCC-CCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC---
Q 048785            2 VHVPVPTP-RKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH---   77 (280)
Q Consensus         2 ~~~~~~~~-~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~---   77 (280)
                      +++|.|.+ ++++|+||+.++++|++|+....|..+.   ..+|.++|||++|+|+++|++++.+++||+|++....   
T Consensus        15 ~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g   91 (386)
T cd08283          15 EEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPG---MKKGDILGHEFMGVVEEVGPEVRNLKVGDRVVVPFTIACG   91 (386)
T ss_pred             EeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCC---CCCCccccccceEEEEEeCCCCCCCCCCCEEEEcCcCCCC
Confidence            56788887 4999999999999999999999887653   3567899999999999999999999999999874200   


Q ss_pred             -----------------------------------------CCCCcceeEEeeccc--ccccCCCCCChhhhcccchhHH
Q 048785           78 -----------------------------------------FSGGGLAEFAMVKES--LTASRPLEVSAAEGAGLPLAGL  114 (280)
Q Consensus        78 -----------------------------------------~~~g~~~~~~~v~~~--~~~~~p~~~~~~~aa~~~~~~~  114 (280)
                                                               ...|+|++|+.++.+  .++++|++++++++++++..++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~  171 (386)
T cd08283          92 ECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILP  171 (386)
T ss_pred             CChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccccCeEEECCCCCCHHHHhhhccchh
Confidence                                                     025899999999987  8999999999999999999999


Q ss_pred             HHHHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCC---cccccCC
Q 048785          115 TALEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPD---GAALKSP  168 (280)
Q Consensus       115 ~a~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~  168 (280)
                      +||+++ ...+                     +|+.+|+ +|+++++ +++.+.+++++...++++....   ......+
T Consensus       172 ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~  250 (386)
T cd08283         172 TGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELT  250 (386)
T ss_pred             hhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHc
Confidence            999998 4433                     8889998 6999885 5788888888545677766542   2233445


Q ss_pred             CCCcccEEEECCCCC----------------------CcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEE
Q 048785          169 SGRKYDAVIHCARGI----------------------PWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPL  226 (280)
Q Consensus       169 ~~~~~d~v~d~~g~~----------------------~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  226 (280)
                      .++++|++|||+|+.                      .+..++++++++|+++.+|........+.......++..+.+.
T Consensus       251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~  330 (386)
T cd08283         251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVYGGTVNKFPIGAAMNKGLTLRMG  330 (386)
T ss_pred             CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCCCCCcCccCHHHHHhCCcEEEec
Confidence            566899999999864                      3667889999999999998544322222222334456665554


Q ss_pred             EEcCCHHHHHHHHHHHHCCCeeE--eccceecchhHHHHHHHHhcCC-CcCcEEEeC
Q 048785          227 LVIPKGENLVFLVKLLKEGKIKT--LIDSKHLLSKAEDAWAKGADGH-ATGKIILEP  280 (280)
Q Consensus       227 ~~~~~~~~~~~~~~~i~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~-~~gkvvi~~  280 (280)
                      . ....+.+.++++++.++++.+  .+.+.|+++++++||+.+.++. ..+|+++++
T Consensus       331 ~-~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  386 (386)
T cd08283         331 Q-THVQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVLKP  386 (386)
T ss_pred             c-CCchHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            3 234678899999999999976  4668899999999999998876 568999874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=100.00  E-value=3e-33  Score=236.73  Aligned_cols=274  Identities=23%  Similarity=0.268  Sum_probs=214.2

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      ++++.|.++++||+||+.++++|++|+.+..|..+.   ..+|.++|||++|+|+++|++++.+++||+|+....  ..|
T Consensus        19 ~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~---~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~--~~g   93 (327)
T PRK10754         19 VEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPP---PSLPSGLGTEAAGVVSKVGSGVKHIKVGDRVVYAQS--ALG   93 (327)
T ss_pred             eeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCC---CCCCCccCcceEEEEEEeCCCCCCCCCCCEEEECCC--CCc
Confidence            577888899999999999999999999988776542   245778999999999999999999999999986521  358


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEec
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCG  139 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~  139 (280)
                      +|++|+.++.+.++++|+++++++++++++.+.+||.++....+                      +|+.+|++|+++++
T Consensus        94 ~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~  173 (327)
T PRK10754         94 AYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG  173 (327)
T ss_pred             ceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence            99999999999999999999999999999999999999865432                      88999999998886


Q ss_pred             C-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhh
Q 048785          140 A-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKL  216 (280)
Q Consensus       140 ~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  216 (280)
                      + ++.+.++++|++++++.+...  ...+..+.++++|++|||+|+..+..++++++++|+++.+|........+....+
T Consensus       174 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  253 (327)
T PRK10754        174 SAQKAQRAKKAGAWQVINYREENIVERVKEITGGKKVRVVYDSVGKDTWEASLDCLQRRGLMVSFGNASGPVTGVNLGIL  253 (327)
T ss_pred             CHHHHHHHHHCCCCEEEcCCCCcHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHhccCCEEEEEccCCCCCCCcCHHHH
Confidence            4 788888899999898876654  2233456677899999999988788899999999999999744321111111111


Q ss_pred             hc------cceeeEEEEEc--CCHHHHHHHHHHHHCCCeeEe--ccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          217 TF------SKKQLVPLLVI--PKGENLVFLVKLLKEGKIKTL--IDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       217 ~~------~~~~~~~~~~~--~~~~~~~~~~~~i~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ..      ....+.....+  ...+.+..+++++.+|++++.  ..++|++++++++++.+.++...+|+|+.+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  327 (327)
T PRK10754        254 NQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRATQGSSLLIP  327 (327)
T ss_pred             hccCceEEecceeecccCCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence            11      11111121111  112345678999999999853  468999999999999999999899999864

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=2.6e-33  Score=240.20  Aligned_cols=272  Identities=24%  Similarity=0.253  Sum_probs=214.0

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec-----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN-----   76 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-----   76 (280)
                      ++++.|.++++||+||+.++++|++|+....|..+    ..+|.++|+|++|+|+++|++++++++||+|++...     
T Consensus        18 ~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~----~~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~   93 (365)
T cd08278          18 EDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP----TPLPAVLGHEGAGVVEAVGSAVTGLKPGDHVVLSFASCGEC   93 (365)
T ss_pred             EEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC----CCCCcccccceeEEEEEeCCCcccCCCCCEEEEcccCCCCC
Confidence            56788889999999999999999999999888764    246789999999999999999999999999985210     


Q ss_pred             -----------------------------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHH
Q 048785           77 -----------------------------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLT  115 (280)
Q Consensus        77 -----------------------------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~  115 (280)
                                                               ....|+|++|+.++.+.++++|+++++++++.+++++++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~~~s~~~a~~l~~~~~t  173 (365)
T cd08278          94 ANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQT  173 (365)
T ss_pred             hHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCCCCCHHHhhhhcchhhh
Confidence                                                     012489999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCC-c-ccccCCCC
Q 048785          116 ALEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPD-G-AALKSPSG  170 (280)
Q Consensus       116 a~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~-~-~~~~~~~~  170 (280)
                      |+.++.....                     +|+..|+ +|+++++ +++.+.++++|++.++++++.. . .....+ +
T Consensus       174 a~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~-~  252 (365)
T cd08278         174 GAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREIT-G  252 (365)
T ss_pred             hhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHh-C
Confidence            9998855432                     8899999 6888875 4788888999999999887654 2 233334 6


Q ss_pred             CcccEEEECCCCC-CcccccccccCCcEEEEeCCCc-hhhHHHHHhhhhccceeeEEEEEc--CCHHHHHHHHHHHHCCC
Q 048785          171 RKYDAVIHCARGI-PWSTFEPNLAENGKVIDLTPTP-SAMLTFAWQKLTFSKKQLVPLLVI--PKGENLVFLVKLLKEGK  246 (280)
Q Consensus       171 ~~~d~v~d~~g~~-~~~~~~~~l~~~g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~g~  246 (280)
                      +++|+++||+|+. .+..++++++++|+++.+|... .....++...+..++..+.+....  ...+.+.++++++++|+
T Consensus       253 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  332 (365)
T cd08278         253 GGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGK  332 (365)
T ss_pred             CCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCCCccccCHHHHhhcCceEEEeecCCcChHHHHHHHHHHHHcCC
Confidence            7899999999864 5789999999999999998542 112223333333456666554431  22467788999999999


Q ss_pred             eeE-eccceecchhHHHHHHHHhcCCCcCcEEEe
Q 048785          247 IKT-LIDSKHLLSKAEDAWAKGADGHATGKIILE  279 (280)
Q Consensus       247 ~~~-~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  279 (280)
                      +.+ .+...|+++++++|++.+.++... |++++
T Consensus       333 l~~~~~~~~~~l~~~~~a~~~~~~~~~~-k~~~~  365 (365)
T cd08278         333 FPFDKLVTFYPFEDINQAIADSESGKVI-KPVLR  365 (365)
T ss_pred             CChHHheEEecHHHHHHHHHHHHCCCce-EEEEC
Confidence            854 244589999999999999877654 77764

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=100.00  E-value=2.3e-33  Score=239.47  Aligned_cols=277  Identities=28%  Similarity=0.334  Sum_probs=220.3

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCC---------CCCCCCccccccceEEEEEeCCCCCCCCCCCEE
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPI---------LPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNV   71 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~---------~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V   71 (280)
                      ++++|.|+++++||+|++.++++|++|+....|..+..         ....+|.++|+|++|+|+++|++++.+++||+|
T Consensus        15 ~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V   94 (350)
T cd08240          15 EVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKV   94 (350)
T ss_pred             EEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEeeCCCCCCCCCCCEE
Confidence            35788899999999999999999999999887754310         012456789999999999999999999999999


Q ss_pred             EEeec------------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh--
Q 048785           72 VAILN------------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG--  125 (280)
Q Consensus        72 ~~~~~------------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~--  125 (280)
                      +++..                        ....|++++|+.++.+.++++|+++++.+++++++.+.+||+++.....  
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~  174 (350)
T cd08240          95 LVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLV  174 (350)
T ss_pred             EECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCC
Confidence            87510                        0146899999999999999999999999999999999999999865432  


Q ss_pred             -------------------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCCCCC-cc-cccCCCCCcccEEEECCCC
Q 048785          126 -------------------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCARG  182 (280)
Q Consensus       126 -------------------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~  182 (280)
                                         +|+.+|+ +|++++++ ++.+.++++|++.++++++.. .. ......+ ++|++|||+|+
T Consensus       175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~d~vid~~g~  253 (350)
T cd08240         175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGG-GVDAVIDFVNN  253 (350)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCC-CCcEEEECCCC
Confidence                               8899999 78888754 788888999998888876654 22 2223334 79999999985


Q ss_pred             -CCcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHH
Q 048785          183 -IPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAE  261 (280)
Q Consensus       183 -~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~  261 (280)
                       ..+..++++|+++|+++.+|..... .........+++..+.+... ...+++.+++++++++.+++.....|++++++
T Consensus       254 ~~~~~~~~~~l~~~g~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~ll~~~~i~~~~~~~~~~~~~~  331 (350)
T cd08240         254 SATASLAFDILAKGGKLVLVGLFGGE-ATLPLPLLPLRALTIQGSYV-GSLEELRELVALAKAGKLKPIPLTERPLSDVN  331 (350)
T ss_pred             HHHHHHHHHHhhcCCeEEEECCCCCC-CcccHHHHhhcCcEEEEccc-CCHHHHHHHHHHHHcCCCccceeeEEcHHHHH
Confidence             5588999999999999998754322 11222234456667666543 34578899999999999987777789999999


Q ss_pred             HHHHHHhcCCCcCcEEEeC
Q 048785          262 DAWAKGADGHATGKIILEP  280 (280)
Q Consensus       262 ~a~~~~~~~~~~gkvvi~~  280 (280)
                      +|++.+.++...+|+++.+
T Consensus       332 ~a~~~~~~~~~~gkvvv~~  350 (350)
T cd08240         332 DALDDLKAGKVVGRAVLKP  350 (350)
T ss_pred             HHHHHHHcCCccceEEecC
Confidence            9999999988889999864

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=3.8e-33  Score=237.19  Aligned_cols=271  Identities=20%  Similarity=0.199  Sum_probs=207.1

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-----   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----   75 (280)
                      ++++|.|.++++|++||+.++++|++|+....|..+.   ..+|.++|||++|+|+++|++++.+++||+|+...     
T Consensus        14 ~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~---~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   90 (339)
T PRK10083         14 IEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPF---AKYPRVIGHEFFGVIDAVGEGVDAARIGERVAVDPVISCG   90 (339)
T ss_pred             EEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCc---CCCCcccccceEEEEEEECCCCccCCCCCEEEEccccCCC
Confidence            3578889999999999999999999999988776542   24688999999999999999999999999998421     


Q ss_pred             -------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh-----------
Q 048785           76 -------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-----------  125 (280)
Q Consensus        76 -------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----------  125 (280)
                                         +....|+|++|+.++.+.++++|+++++++++ +...+.++|.++ ...+           
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~~~-~~~~~~~g~~vlI~g  168 (339)
T PRK10083         91 HCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEPFTIAANVT-GRTGPTEQDVALIYG  168 (339)
T ss_pred             CCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hhchHHHHHHHH-HhcCCCCCCEEEEEC
Confidence                               11136899999999999999999999998876 445666777654 3322           


Q ss_pred             ----------hhhh-CCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCC-Ccccccc
Q 048785          126 ----------LAKL-GNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGI-PWSTFEP  190 (280)
Q Consensus       126 ----------la~~-~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~  190 (280)
                                +|+. +|+ .++++++ +++.+.++++|+++++++++.. ...+. ..+.++|++|||+|++ .+..+++
T Consensus       169 ~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~-~~g~~~d~vid~~g~~~~~~~~~~  247 (339)
T PRK10083        169 AGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALE-EKGIKPTLIIDAACHPSILEEAVT  247 (339)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHh-cCCCCCCEEEECCCCHHHHHHHHH
Confidence                      6775 699 4666765 4788899999999999887644 22221 1233468999999964 5889999


Q ss_pred             cccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeE--eccceecchhHHHHHHHHh
Q 048785          191 NLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT--LIDSKHLLSKAEDAWAKGA  268 (280)
Q Consensus       191 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~--~~~~~~~~~~~~~a~~~~~  268 (280)
                      +++++|+++.+|.... ...+....+..+++++.+..  ...+.++++++++++|++++  +++++|+++++++|++.+.
T Consensus       248 ~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~  324 (339)
T PRK10083        248 LASPAARIVLMGFSSE-PSEIVQQGITGKELSIFSSR--LNANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFE  324 (339)
T ss_pred             HhhcCCEEEEEccCCC-CceecHHHHhhcceEEEEEe--cChhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHh
Confidence            9999999999985432 11112223334555555443  25678999999999999987  4778999999999999988


Q ss_pred             cCC-CcCcEEEeC
Q 048785          269 DGH-ATGKIILEP  280 (280)
Q Consensus       269 ~~~-~~gkvvi~~  280 (280)
                      ++. ..+|+++.+
T Consensus       325 ~~~~~~~kvvv~~  337 (339)
T PRK10083        325 KDQRHCCKVLLTF  337 (339)
T ss_pred             cCCCceEEEEEec
Confidence            653 568998853

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=100.00  E-value=3.3e-33  Score=242.09  Aligned_cols=278  Identities=23%  Similarity=0.247  Sum_probs=217.4

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCC-------CCCCCC-ccccccceEEEEEeCCCCCCCCCCCEEEE
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPI-------LPRKFP-YIPATDVAGEIIEVGSEVKNFKAGYNVVA   73 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~-------~~~~~p-~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~   73 (280)
                      +++|.|.++++||+|++.++++|.+|.....+.....       .....| .++|||++|+|+++|++++.+++||+|++
T Consensus        28 ~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~  107 (398)
T TIGR01751        28 EVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGSDASGVVWRVGPGVTRWKVGDEVVA  107 (398)
T ss_pred             eecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceecccceEEEEEEeCCCCCCCCCCCEEEE
Confidence            4678889999999999999999999987665543110       000223 37999999999999999999999999987


Q ss_pred             eec-------------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHh--hhh-
Q 048785           74 ILN-------------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQ--SAG-  125 (280)
Q Consensus        74 ~~~-------------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~--~~~-  125 (280)
                      ...                         ....|+|++|+.++.+.++++|+++++++++.+++.+.+||+++..  ..+ 
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~  187 (398)
T TIGR01751       108 SCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATV  187 (398)
T ss_pred             ccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCC
Confidence            531                         0135899999999999999999999999999999999999999854  121 


Q ss_pred             ---------------------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCCCC----------------------
Q 048785          126 ---------------------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPD----------------------  161 (280)
Q Consensus       126 ---------------------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~----------------------  161 (280)
                                           +|+.+|++++++++ +++.+.++++|++.++|+++.+                      
T Consensus       188 ~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (398)
T TIGR01751       188 KPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKR  267 (398)
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchh
Confidence                                 88899998887775 4788888899999999875431                      


Q ss_pred             --cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHH
Q 048785          162 --GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLV  239 (280)
Q Consensus       162 --~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (280)
                        ....+.+.++++|++|||+|+..+..++++++++|+++.+|........+....+..++..+.+.. ....+++++++
T Consensus       268 ~~~~~~~~~~~~g~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  346 (398)
T TIGR01751       268 FGKRIRELTGGEDPDIVFEHPGRATFPTSVFVCRRGGMVVICGGTTGYNHDYDNRYLWMRQKRIQGSH-FANLREAWEAN  346 (398)
T ss_pred             HHHHHHHHcCCCCceEEEECCcHHHHHHHHHhhccCCEEEEEccccCCCCCcCHHHHhhcccEEEccc-cCcHHHHHHHH
Confidence              011223455789999999998778899999999999999986543222233334444555555543 23456678899


Q ss_pred             HHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          240 KLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       240 ~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ++++++++.+.+++++++++++++|+.+.++...||+|+++
T Consensus       347 ~~l~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~  387 (398)
T TIGR01751       347 RLVAKGRIDPTLSKVYPLEEIGQAHQDVHRNHHQGNVAVLV  387 (398)
T ss_pred             HHHHCCCcccceeeEEcHHHHHHHHHHHHcCCCCceEEEEe
Confidence            99999999988889999999999999999999899999864

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=7e-33  Score=235.75  Aligned_cols=274  Identities=27%  Similarity=0.352  Sum_probs=220.5

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      +++|.|.+.++|++||+.++++|+.|+.+..|..+.  ....|.++|+|++|+|+++|++++.+++||+|+...      
T Consensus        17 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~~~~~~~   94 (341)
T cd08297          17 KDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPV--KPKLPLIGGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACG   94 (341)
T ss_pred             EEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCc--CCCCCccCCcccceEEEEeCCCCCCCCCCCEEEEecCCCCCC
Confidence            467788899999999999999999999988776642  124467899999999999999999999999998641      


Q ss_pred             -------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh-----------
Q 048785           76 -------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-----------  125 (280)
Q Consensus        76 -------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----------  125 (280)
                                         +....|++++|+.++.+.++++|++++++++++++..+.|||+++... +           
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~~~~~-~~~~~~~vlV~g  173 (341)
T cd08297          95 KCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKKA-GLKPGDWVVISG  173 (341)
T ss_pred             CCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHHHHhc-CCCCCCEEEEEC
Confidence                               011368999999999999999999999999999999999999998552 2           


Q ss_pred             -----------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCC-CCcccccc
Q 048785          126 -----------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARG-IPWSTFEP  190 (280)
Q Consensus       126 -----------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~  190 (280)
                                 +|+.+|++|++++++ ++.+.++++|++.++++++..  ......+.++++|++|||.++ ..+..+++
T Consensus       174 ~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~  253 (341)
T cd08297         174 AGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALD  253 (341)
T ss_pred             CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHH
Confidence                       889999999999865 778888889999999887654  223344556789999997764 55788999


Q ss_pred             cccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcC
Q 048785          191 NLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADG  270 (280)
Q Consensus       191 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~  270 (280)
                      +++++|+++.+|........+....+..++.++.+... ...++++.++++++++.+++.+ ..|++++++++++.+.++
T Consensus       254 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~a~~~~~~~  331 (341)
T cd08297         254 YLRPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLV-GTRQDLQEALEFAARGKVKPHI-QVVPLEDLNEVFEKMEEG  331 (341)
T ss_pred             HhhcCCEEEEecCCCCCCCCCCHHHHHhcccEEEEecc-CCHHHHHHHHHHHHcCCCccee-EEEcHHHHHHHHHHHHcC
Confidence            99999999999855432223333344456666665432 2468899999999999998755 579999999999999999


Q ss_pred             CCcCcEEEeC
Q 048785          271 HATGKIILEP  280 (280)
Q Consensus       271 ~~~gkvvi~~  280 (280)
                      ...||+++++
T Consensus       332 ~~~gkvvi~~  341 (341)
T cd08297         332 KIAGRVVVDF  341 (341)
T ss_pred             CccceEEEeC
Confidence            9899999875

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=2.5e-33  Score=239.06  Aligned_cols=274  Identities=22%  Similarity=0.255  Sum_probs=215.3

Q ss_pred             CCCCCCCC-CCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-----
Q 048785            2 VHVPVPTP-RKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-----   75 (280)
Q Consensus         2 ~~~~~~~~-~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----   75 (280)
                      .++|.|.+ .++||+||+.++++|++|+....|..+.   ..+|.++|+|++|+|+++|++++.+++||+|++..     
T Consensus        15 ~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   91 (347)
T cd05278          15 EEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPG---AKHGMILGHEFVGEVVEVGSDVKRLKPGDRVSVPCITFCG   91 (347)
T ss_pred             EEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCC---CCCCceeccceEEEEEEECCCccccCCCCEEEecCCCCCC
Confidence            46788888 8999999999999999999988887653   35688999999999999999999999999998721     


Q ss_pred             ----------------------cCCCCCcceeEEeeccc--ccccCCCCCChhhhcccchhHHHHHHHHHhhhh------
Q 048785           76 ----------------------NHFSGGGLAEFAMVKES--LTASRPLEVSAAEGAGLPLAGLTALEALTQSAG------  125 (280)
Q Consensus        76 ----------------------~~~~~g~~~~~~~v~~~--~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~------  125 (280)
                                            +....|+|++|++++.+  .++++|++++++++++++.+++|||+++ ...+      
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~  170 (347)
T cd05278          92 RCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA-ELAGIKPGST  170 (347)
T ss_pred             CChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhhheeehh-hhcCCCCCCE
Confidence                                  01236899999999987  8999999999999999999999999997 3322      


Q ss_pred             ---------------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCCCCC-cc-cccCCCCCcccEEEECCCC-CCc
Q 048785          126 ---------------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCARG-IPW  185 (280)
Q Consensus       126 ---------------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~-~~~  185 (280)
                                     +|+.+|+ +|++++++ ++.+.++++|++.++++++.. .. ....+.++++|++|||+++ ..+
T Consensus       171 VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~  250 (347)
T cd05278         171 VAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAVGFEETF  250 (347)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEccCCHHHH
Confidence                           8889997 88888754 677888899999999887655 22 2234556789999999998 568


Q ss_pred             ccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEe--ccceecchhHHHH
Q 048785          186 STFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTL--IDSKHLLSKAEDA  263 (280)
Q Consensus       186 ~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~--~~~~~~~~~~~~a  263 (280)
                      ..++++++++|+++.+|................++..+.+.. ....+.++++++++.++.+++.  +...|+++++++|
T Consensus       251 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a  329 (347)
T cd05278         251 EQAVKVVRPGGTIANVGVYGKPDPLPLLGEWFGKNLTFKTGL-VPVRARMPELLDLIEEGKIDPSKLITHRFPLDDILKA  329 (347)
T ss_pred             HHHHHHhhcCCEEEEEcCCCCCcccCccchhhhceeEEEeec-cCchhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHH
Confidence            889999999999998874332210001111123455544433 2346789999999999999863  5678999999999


Q ss_pred             HHHHhcCCC-cCcEEEeC
Q 048785          264 WAKGADGHA-TGKIILEP  280 (280)
Q Consensus       264 ~~~~~~~~~-~gkvvi~~  280 (280)
                      ++.+..++. .+|+++++
T Consensus       330 ~~~~~~~~~~~~~~vv~~  347 (347)
T cd05278         330 YRLFDNKPDGCIKVVIRP  347 (347)
T ss_pred             HHHHhcCCCCceEEEecC
Confidence            999988776 68998864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=100.00  E-value=5e-33  Score=236.37  Aligned_cols=270  Identities=21%  Similarity=0.313  Sum_probs=212.9

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-----   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----   75 (280)
                      ++++|.|.++++||+||+.++++|++|+....|..+.    ..|.++|||++|+|+++|++++.+++||+|++..     
T Consensus        15 ~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~----~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~   90 (338)
T PRK09422         15 VVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD----KTGRILGHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGC   90 (338)
T ss_pred             EEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC----CCCccCCcccceEEEEECCCCccCCCCCEEEEccCCCCC
Confidence            3678899999999999999999999999988776532    3467899999999999999999999999998621     


Q ss_pred             --------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------
Q 048785           76 --------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------  125 (280)
Q Consensus        76 --------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------  125 (280)
                                          +....|++++|+.++.+.++++|++++++++++++..++|||+++ ..++          
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~  169 (338)
T PRK09422         91 GHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAI-KVSGIKPGQWIAIY  169 (338)
T ss_pred             CCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHHH-HhcCCCCCCEEEEE
Confidence                                112368999999999999999999999999999999999999998 4332          


Q ss_pred             -----------hhhh-CCCEEEEEec-CCcHHHHHhcCCCeeecCCC-CC-cccccCCCCCccc-EEEECCCCCCccccc
Q 048785          126 -----------LAKL-GNSHVTATCG-ARNIEFVKSLGADEVLDYKT-PD-GAALKSPSGRKYD-AVIHCARGIPWSTFE  189 (280)
Q Consensus       126 -----------la~~-~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~-~~-~~~~~~~~~~~~d-~v~d~~g~~~~~~~~  189 (280)
                                 +|+. .|++|+++++ +++.+.++++|++.+++++. .. ...+....+ ++| +++++.++..+..++
T Consensus       170 g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~-~~d~vi~~~~~~~~~~~~~  248 (338)
T PRK09422        170 GAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTG-GAHAAVVTAVAKAAFNQAV  248 (338)
T ss_pred             CCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcC-CCcEEEEeCCCHHHHHHHH
Confidence                       7776 5999999985 48899999999999988754 22 222222223 588 455555556688999


Q ss_pred             ccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhc
Q 048785          190 PNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGAD  269 (280)
Q Consensus       190 ~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~  269 (280)
                      ++++++|+++.+|.... ...+....+..+..++.+.. ....+.++.+++++++|.+.+.+. .++++++++||+.+.+
T Consensus       249 ~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~l~~~v~-~~~~~~~~~a~~~~~~  325 (338)
T PRK09422        249 DAVRAGGRVVAVGLPPE-SMDLSIPRLVLDGIEVVGSL-VGTRQDLEEAFQFGAEGKVVPKVQ-LRPLEDINDIFDEMEQ  325 (338)
T ss_pred             HhccCCCEEEEEeeCCC-CceecHHHHhhcCcEEEEec-CCCHHHHHHHHHHHHhCCCCccEE-EEcHHHHHHHHHHHHc
Confidence            99999999999985432 12223344455666665533 235778999999999999977655 6899999999999999


Q ss_pred             CCCcCcEEEe
Q 048785          270 GHATGKIILE  279 (280)
Q Consensus       270 ~~~~gkvvi~  279 (280)
                      +...||+++.
T Consensus       326 ~~~~gkvvv~  335 (338)
T PRK09422        326 GKIQGRMVID  335 (338)
T ss_pred             CCccceEEEe
Confidence            9988999885

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=5.5e-33  Score=238.56  Aligned_cols=273  Identities=18%  Similarity=0.177  Sum_probs=209.5

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN----   76 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~----   76 (280)
                      ++++|.|++.++||+||+.++++|++|+....|...    ..+|.++|||++|+|+++|++++.+++||+|++...    
T Consensus        22 l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~----~~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~   97 (373)
T cd08299          22 IEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV----TPFPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCG   97 (373)
T ss_pred             EEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC----CCCCccccccceEEEEEeCCCCccCCCCCEEEECCCCCCC
Confidence            357889999999999999999999999999888752    256789999999999999999999999999987510    


Q ss_pred             ----------------------------------------CC-CCCcceeEEeecccccccCCCCCChhhhcccchhHHH
Q 048785           77 ----------------------------------------HF-SGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLT  115 (280)
Q Consensus        77 ----------------------------------------~~-~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~  115 (280)
                                                              +. ..|+|+||+++|.+.++++|+++++++++++++++++
T Consensus        98 ~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~~l~~~~aa~~~~~~~t  177 (373)
T cd08299          98 KCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFST  177 (373)
T ss_pred             CChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCCCCCChHHhheeccchHH
Confidence                                                    00 2589999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCC---cc-cccCC
Q 048785          116 ALEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPD---GA-ALKSP  168 (280)
Q Consensus       116 a~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~---~~-~~~~~  168 (280)
                      ||+++...++                     +|+.+|+ +|+++++ +++.+.++++|++++++..+.+   .. ....+
T Consensus       178 a~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~  257 (373)
T cd08299         178 GYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLTEMT  257 (373)
T ss_pred             HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecccccchhHHHHHHHHh
Confidence            9998755433                     7888999 8999885 4789999999999999876533   12 22223


Q ss_pred             CCCcccEEEECCCCCC-ccccccc-ccCCcEEEEeCCCchh-hHHHHHhhhhccceeeEEEEEc--CCHHHHHHHHHHHH
Q 048785          169 SGRKYDAVIHCARGIP-WSTFEPN-LAENGKVIDLTPTPSA-MLTFAWQKLTFSKKQLVPLLVI--PKGENLVFLVKLLK  243 (280)
Q Consensus       169 ~~~~~d~v~d~~g~~~-~~~~~~~-l~~~g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~  243 (280)
                      . +++|+++||+|++. +..++.. ++++|+++.+|..... ..++....+ .++.++.+....  ...+++.++++.+.
T Consensus       258 ~-~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~  335 (373)
T cd08299         258 D-GGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPMLL-LTGRTWKGAVFGGWKSKDSVPKLVADYM  335 (373)
T ss_pred             C-CCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCCceeecCHHHH-hcCCeEEEEEecCCccHHHHHHHHHHHH
Confidence            3 57999999999744 5665554 4689999999854321 222222212 245556655432  23467778888888


Q ss_pred             CCCe--eEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          244 EGKI--KTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       244 ~g~~--~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ++.+  ++.++++|+++++++||+.+.+++. .|+++++
T Consensus       336 ~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~-~k~~~~~  373 (373)
T cd08299         336 AKKFNLDPLITHTLPFEKINEGFDLLRSGKS-IRTVLTF  373 (373)
T ss_pred             cCCCCchhheeeeecHHHHHHHHHHHhCCCc-ceEEEeC
Confidence            7754  4567899999999999999887765 4777764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=100.00  E-value=7.5e-33  Score=235.53  Aligned_cols=275  Identities=21%  Similarity=0.306  Sum_probs=209.2

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      +++|.|.++++||+||+.++++|++|+.++.+.........+|.++|||++|+|+++|++++.+++||+|++..      
T Consensus        16 ~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~   95 (341)
T PRK05396         16 TDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFKVGDRVSGEGHIVCGH   95 (341)
T ss_pred             EECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCCCCCEEEECCCCCCCC
Confidence            57788999999999999999999999997766421111124577899999999999999999999999998751      


Q ss_pred             ------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhh--h----------
Q 048785           76 ------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA--G----------  125 (280)
Q Consensus        76 ------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~--~----------  125 (280)
                                        +...+|+|++|+.++.+.++++|+++++++++++ ..+.++++++....  +          
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~-~~~~~~~~~~~~~~~~g~~vlV~~~g~  174 (341)
T PRK05396         96 CRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIF-DPFGNAVHTALSFDLVGEDVLITGAGP  174 (341)
T ss_pred             ChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHhh-hHHHHHHHHHHcCCCCCCeEEEECCCH
Confidence                              1114689999999999999999999999888754 34445554432211  1          


Q ss_pred             -------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCC-cc-cccCCCCCcccEEEECCCCC-Cccccccccc
Q 048785          126 -------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCARGI-PWSTFEPNLA  193 (280)
Q Consensus       126 -------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~  193 (280)
                             +|+.+|+ +|+++++ +++.++++++|+++++++++.. .. ....+.++++|++|||+|+. .+..++++++
T Consensus       175 vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~  254 (341)
T PRK05396        175 IGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMN  254 (341)
T ss_pred             HHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHh
Confidence                   8889999 6777774 4778888999999999887655 22 22345567899999999874 4788999999


Q ss_pred             CCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCC-CeeEeccceecchhHHHHHHHHhcCCC
Q 048785          194 ENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEG-KIKTLIDSKHLLSKAEDAWAKGADGHA  272 (280)
Q Consensus       194 ~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g-~~~~~~~~~~~~~~~~~a~~~~~~~~~  272 (280)
                      ++|+++.+|..... ..+....+.+++.++.++......+.+..+++++.++ ++.+.+.+.++++++++|++.+.++. 
T Consensus       255 ~~G~~v~~g~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~-  332 (341)
T PRK05396        255 HGGRIAMLGIPPGD-MAIDWNKVIFKGLTIKGIYGREMFETWYKMSALLQSGLDLSPIITHRFPIDDFQKGFEAMRSGQ-  332 (341)
T ss_pred             cCCEEEEEecCCCC-CcccHHHHhhcceEEEEEEccCccchHHHHHHHHHcCCChhHheEEEEeHHHHHHHHHHHhcCC-
Confidence            99999999854422 2223455666777776654322344566788899998 56566778999999999999998876 


Q ss_pred             cCcEEEe
Q 048785          273 TGKIILE  279 (280)
Q Consensus       273 ~gkvvi~  279 (280)
                      .||++++
T Consensus       333 ~gk~vv~  339 (341)
T PRK05396        333 SGKVILD  339 (341)
T ss_pred             CceEEEe
Confidence            7999985

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=100.00  E-value=1.5e-32  Score=233.51  Aligned_cols=277  Identities=23%  Similarity=0.257  Sum_probs=210.4

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN----   76 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~----   76 (280)
                      +++.|.|.++++||+||+.++++|+.|+.++.+.........+|.++|+|++|+|+++|++++.+++||+|++...    
T Consensus        13 l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   92 (340)
T TIGR00692        13 LTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVSVETHIVCG   92 (340)
T ss_pred             EEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEEECCcCCCC
Confidence            3578889999999999999999999999877654211111235678999999999999999999999999987310    


Q ss_pred             --------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh-----------
Q 048785           77 --------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-----------  125 (280)
Q Consensus        77 --------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----------  125 (280)
                                          ....|+|++|+.++.+.++++|++++++++ +++..+.+|++++.....           
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~~~~~~~g~~vlI~~~g  171 (340)
T TIGR00692        93 KCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTVLAGPISGKSVLVTGAG  171 (340)
T ss_pred             CChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcchHHHHHHHHHccCCCCCEEEEECCC
Confidence                                114689999999999999999999998654 566777788887632211           


Q ss_pred             --------hhhhCCCE-EEEEecC-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCC-Ccccccccc
Q 048785          126 --------LAKLGNSH-VTATCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGI-PWSTFEPNL  192 (280)
Q Consensus       126 --------la~~~G~~-Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l  192 (280)
                              +|+.+|++ |++++++ ++.+.++++|++.+++++...  ......+.++++|++|||+|+. .+..+++++
T Consensus       172 ~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l  251 (340)
T TIGR00692       172 PIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAV  251 (340)
T ss_pred             HHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhh
Confidence                    88899996 8888654 678888899998888876554  2223345567899999998864 578889999


Q ss_pred             cCCcEEEEeCCCchhhHHH-HHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCee--EeccceecchhHHHHHHHHhc
Q 048785          193 AENGKVIDLTPTPSAMLTF-AWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIK--TLIDSKHLLSKAEDAWAKGAD  269 (280)
Q Consensus       193 ~~~g~~v~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~--~~~~~~~~~~~~~~a~~~~~~  269 (280)
                      +++|+++.+|..... ..+ ....+.+++.++.+.......+.+.++++++++++++  +.+.+.+++++++++++.+.+
T Consensus       252 ~~~g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~  330 (340)
T TIGR00692       252 TPGGRVSLLGLPPGK-VTIDFTNKVIFKGLTIYGITGRHMFETWYTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRS  330 (340)
T ss_pred             cCCCEEEEEccCCCC-cccchhhhhhhcceEEEEEecCCchhhHHHHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHhc
Confidence            999999999854321 111 1224455666666544333445678899999999986  556789999999999999988


Q ss_pred             CCCcCcEEEeC
Q 048785          270 GHATGKIILEP  280 (280)
Q Consensus       270 ~~~~gkvvi~~  280 (280)
                      +.. ||+++.+
T Consensus       331 ~~~-gkvvv~~  340 (340)
T TIGR00692       331 GQT-GKVILSL  340 (340)
T ss_pred             CCC-ceEEEeC
Confidence            874 9999864

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=100.00  E-value=1.3e-32  Score=234.31  Aligned_cols=274  Identities=24%  Similarity=0.285  Sum_probs=211.0

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-----   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----   75 (280)
                      ++++|.|.+.++||+|++.++++|+.|+....+.........+|.++|+|++|+|+++|++++.+++||+|++..     
T Consensus        12 ~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   91 (343)
T cd05285          12 LEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVGDRVAIEPGVPCR   91 (343)
T ss_pred             EEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCCCEEEEccccCCC
Confidence            356788889999999999999999999987643211111123567899999999999999999999999998621     


Q ss_pred             -------------------c-CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------
Q 048785           76 -------------------N-HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------  125 (280)
Q Consensus        76 -------------------~-~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------  125 (280)
                                         + ....|+|++|+.++++.++++|+++++++++++ ..+.+||+++ ..++          
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~  169 (343)
T cd05285          92 TCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVF  169 (343)
T ss_pred             CChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEE
Confidence                               1 113689999999999999999999999999877 4667898887 3332          


Q ss_pred             -----------hhhhCCCE-EEEEec-CCcHHHHHhcCCCeeecCCCCCc-----ccccCCCCCcccEEEECCCCC-Ccc
Q 048785          126 -----------LAKLGNSH-VTATCG-ARNIEFVKSLGADEVLDYKTPDG-----AALKSPSGRKYDAVIHCARGI-PWS  186 (280)
Q Consensus       126 -----------la~~~G~~-Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~-----~~~~~~~~~~~d~v~d~~g~~-~~~  186 (280)
                                 +|+.+|++ |+++++ +++.++++++|++++++++....     .....+.++++|++|||+|+. .++
T Consensus       170 g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~  249 (343)
T cd05285         170 GAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIECTGAESCIQ  249 (343)
T ss_pred             CCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEEECCCCHHHHH
Confidence                       88999996 888875 47788888899999998776542     233445667899999999986 688


Q ss_pred             cccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCee--EeccceecchhHHHHH
Q 048785          187 TFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIK--TLIDSKHLLSKAEDAW  264 (280)
Q Consensus       187 ~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~--~~~~~~~~~~~~~~a~  264 (280)
                      .++++++++|+++.+|..... ..+......+++..+.+...  ..+.++.++++++++.+.  +.+.++|+++++.+|+
T Consensus       250 ~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~  326 (343)
T cd05285         250 TAIYATRPGGTVVLVGMGKPE-VTLPLSAASLREIDIRGVFR--YANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAF  326 (343)
T ss_pred             HHHHHhhcCCEEEEEccCCCC-CccCHHHHhhCCcEEEEecc--ChHHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHH
Confidence            899999999999998754322 12222345556666666543  347788999999999865  4566789999999999


Q ss_pred             HHHhcCC-CcCcEEEe
Q 048785          265 AKGADGH-ATGKIILE  279 (280)
Q Consensus       265 ~~~~~~~-~~gkvvi~  279 (280)
                      +.+.+++ ..+|++|.
T Consensus       327 ~~~~~~~~~~~k~~~~  342 (343)
T cd05285         327 ETAAKGKKGVIKVVIE  342 (343)
T ss_pred             HHHHcCCCCeeEEEEe
Confidence            9998874 45899873

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=100.00  E-value=2.3e-32  Score=231.84  Aligned_cols=273  Identities=27%  Similarity=0.368  Sum_probs=214.7

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      ++.+.|.+.++||+||+.++++|+.|+....|..+.  ....|.++|+|++|+|+++|++++.+++||+|+++.   ..|
T Consensus        19 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~---~~g   93 (334)
T PTZ00354         19 GESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPP--PPGSSEILGLEVAGYVEDVGSDVKRFKEGDRVMALL---PGG   93 (334)
T ss_pred             EeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC--CCCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEec---CCC
Confidence            355667789999999999999999999988776532  124467899999999999999999999999999874   358


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEec
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCG  139 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~  139 (280)
                      +|++|+.++.+.++++|+++++.+++.++.++.+||+++.....                      +|+.+|++++.+++
T Consensus        94 ~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~  173 (334)
T PTZ00354         94 GYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS  173 (334)
T ss_pred             ceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC
Confidence            99999999999999999999999999999999999999866432                      88899998776665


Q ss_pred             -CCcHHHHHhcCCCeeecCCCCC---cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHH-HHHh
Q 048785          140 -ARNIEFVKSLGADEVLDYKTPD---GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLT-FAWQ  214 (280)
Q Consensus       140 -~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~-~~~~  214 (280)
                       +++.+.+.++|.+.+++++..+   ......+.++++|++|||+++..+..++++++++|+++.++........ +...
T Consensus       174 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~~  253 (334)
T PTZ00354        174 SEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGSYLSETAEVLAVDGKWIVYGFMGGAKVEKFNLL  253 (334)
T ss_pred             CHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEECCchHHHHHHHHHhccCCeEEEEecCCCCcccccCHH
Confidence             4788888889998888875532   2233345567899999999988888999999999999998743322211 2223


Q ss_pred             hhhccceeeEEEEEcC--C-------HHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEe
Q 048785          215 KLTFSKKQLVPLLVIP--K-------GENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILE  279 (280)
Q Consensus       215 ~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  279 (280)
                      .+..++..+.+.....  .       .+.++.++++++++.+.+.+.+.+++++++++++.+.+++..+|+++.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kvvv~  327 (334)
T PTZ00354        254 PLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKPIVDRTYPLEEVAEAHTFLEQNKNIGKVVLT  327 (334)
T ss_pred             HHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHHHHHHhCCCCceEEEe
Confidence            3333444444433211  0       134577889999999988778899999999999999988888999885

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=100.00  E-value=7.4e-33  Score=234.95  Aligned_cols=271  Identities=27%  Similarity=0.325  Sum_probs=215.8

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN----   76 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~----   76 (280)
                      ++++|.|.++++|++|++.++++|++|+....|..+.   ..+|.++|||++|+|+++|++++.+++||+|++...    
T Consensus        15 ~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~~~~   91 (334)
T PRK13771         15 IEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPR---MKYPVILGHEVVGTVEEVGENVKGFKPGDRVASLLYAPDG   91 (334)
T ss_pred             EEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCC---CCCCeeccccceEEEEEeCCCCccCCCCCEEEECCCCCCc
Confidence            3578899999999999999999999999988776542   255788999999999999999988999999988520    


Q ss_pred             --------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh-----------
Q 048785           77 --------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-----------  125 (280)
Q Consensus        77 --------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----------  125 (280)
                                          ....|+|++|+.++.+.++++|+++++.+++.+++.+.+||+++... +           
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g  170 (334)
T PRK13771         92 TCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTG  170 (334)
T ss_pred             CChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHHHhc-CCCCCCEEEEEC
Confidence                                11268999999999999999999999999999999999999998553 3           


Q ss_pred             -----------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCccccccccc
Q 048785          126 -----------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLA  193 (280)
Q Consensus       126 -----------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~  193 (280)
                                 +++.+|++|+++++ +++.+.++++ +++++++++....... . + ++|++|||+|+..+..++++++
T Consensus       171 ~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~-~-~-~~d~~ld~~g~~~~~~~~~~l~  246 (334)
T PRK13771        171 AGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGSKFSEEVKK-I-G-GADIVIETVGTPTLEESLRSLN  246 (334)
T ss_pred             CCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCchhHHHHHHh-c-C-CCcEEEEcCChHHHHHHHHHHh
Confidence                       88999999998886 4778888878 7777766521122222 2 2 6999999999988889999999


Q ss_pred             CCcEEEEeCCCchhhH-HHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCC
Q 048785          194 ENGKVIDLTPTPSAML-TFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHA  272 (280)
Q Consensus       194 ~~g~~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~  272 (280)
                      ++|+++.+|....... .........++.++.+.. ...+++++.++++++++.+++.+.+.|+++++++||+.+.++..
T Consensus       247 ~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~  325 (334)
T PRK13771        247 MGGKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHI-SATKRDVEEALKLVAEGKIKPVIGAEVSLSEIDKALEELKDKSR  325 (334)
T ss_pred             cCCEEEEEeccCCCCCcccCHHHHHhcccEEEEec-CCCHHHHHHHHHHHHcCCCcceEeeeEcHHHHHHHHHHHHcCCC
Confidence            9999999985432111 111222234555665543 34678899999999999998878889999999999999998888


Q ss_pred             cCcEEEeC
Q 048785          273 TGKIILEP  280 (280)
Q Consensus       273 ~gkvvi~~  280 (280)
                      .+|+++.+
T Consensus       326 ~~kvv~~~  333 (334)
T PRK13771        326 IGKILVKP  333 (334)
T ss_pred             cceEEEec
Confidence            89999864

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.2e-32  Score=235.02  Aligned_cols=273  Identities=22%  Similarity=0.307  Sum_probs=210.8

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCC------CCCCCCccccccceEEEEEeCCCCC--CCCCCCEEE
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPI------LPRKFPYIPATDVAGEIIEVGSEVK--NFKAGYNVV   72 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~------~~~~~p~~~G~e~~G~V~~vG~~v~--~~~~Gd~V~   72 (280)
                      +++++.|+++++||+||+.++++|+.|+....|.....      ....+|.++|||++|+|+++|++++  ++++||+|+
T Consensus        14 ~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~~~Gd~V~   93 (350)
T cd08256          14 LEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGEGAEERGVKVGDRVI   93 (350)
T ss_pred             EEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCCCcccCCCCCCCEEE
Confidence            35788899999999999999999999999887753110      0014577899999999999999999  899999998


Q ss_pred             Ee--------------------------ecCCCCCcceeEEeeccc-ccccCCCCCChhhhcccchhHHHHHHHHHhhhh
Q 048785           73 AI--------------------------LNHFSGGGLAEFAMVKES-LTASRPLEVSAAEGAGLPLAGLTALEALTQSAG  125 (280)
Q Consensus        73 ~~--------------------------~~~~~~g~~~~~~~v~~~-~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~  125 (280)
                      +.                          ......|+|++|+.++++ .++++|+++++++++++ ..++|+|+++ ..++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~  171 (350)
T cd08256          94 SEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAILI-EPLACALHAV-DRAN  171 (350)
T ss_pred             ECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcC
Confidence            72                          101136899999999988 57899999999999988 7888999997 4333


Q ss_pred             ---------------------hhhhCCCE-EEEEecC-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECC
Q 048785          126 ---------------------LAKLGNSH-VTATCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCA  180 (280)
Q Consensus       126 ---------------------la~~~G~~-Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~  180 (280)
                                           +|+.+|++ +++++++ ++.+.++++|++.+++++...  ......+.++++|++|||+
T Consensus       172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vdvvld~~  251 (350)
T cd08256         172 IKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPEVDVVEKIKELTGGYGCDIYIEAT  251 (350)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence                                 88999984 6666654 677888899999998876544  2233445667899999999


Q ss_pred             CCC-CcccccccccCCcEEEEeCCCchhhHHHHHhhh-hccceeeEEEEEcCCHHHHHHHHHHHHCCCeeE--eccceec
Q 048785          181 RGI-PWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKL-TFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT--LIDSKHL  256 (280)
Q Consensus       181 g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~--~~~~~~~  256 (280)
                      |+. .+..++++++++|+++.+|..... ..+.+..+ ..+++.+.+...  ....+.++++++++|.+++  .+.++|+
T Consensus       252 g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~g~l~~~~~~~~~~~  328 (350)
T cd08256         252 GHPSAVEQGLNMIRKLGRFVEFSVFGDP-VTVDWSIIGDRKELDVLGSHL--GPYCYPIAIDLIASGRLPTDGIVTHQFP  328 (350)
T ss_pred             CChHHHHHHHHHhhcCCEEEEEccCCCC-CccChhHhhcccccEEEEecc--CchhHHHHHHHHHcCCCChhHheEEEeE
Confidence            964 578899999999999998743321 11222222 234555555432  3456888999999999986  3678999


Q ss_pred             chhHHHHHHHHhcCCCcCcEEE
Q 048785          257 LSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       257 ~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                      ++++++|++.+.+++..+|+++
T Consensus       329 l~~~~~a~~~~~~~~~~~kvv~  350 (350)
T cd08256         329 LEDFEEAFELMARGDDSIKVVL  350 (350)
T ss_pred             HHHHHHHHHHHHhCCCceEEeC
Confidence            9999999999999888888874

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=100.00  E-value=2.3e-32  Score=232.42  Aligned_cols=274  Identities=22%  Similarity=0.270  Sum_probs=209.9

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHh-ccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKK-GVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL----   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~-g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~----   75 (280)
                      ++++|.|.++++||+||+.++++|++|+...+ |.... ....+|.++|+|++|+|+++|++++.+++||+|++..    
T Consensus        11 ~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~-~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~   89 (339)
T cd08232          11 VEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGT-VRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVNPSRPC   89 (339)
T ss_pred             EEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCc-ccccCCeecCccceEEEEeeCCCCCcCCCCCEEEEccCCcC
Confidence            35778899999999999999999999998763 33211 1224577999999999999999999999999998621    


Q ss_pred             --------------------c-----CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh-----
Q 048785           76 --------------------N-----HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-----  125 (280)
Q Consensus        76 --------------------~-----~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----  125 (280)
                                          +     ....|+|++|+.++.+.++++|+++++++++. +.++++||+++.....     
T Consensus        90 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~l~~~~~~~~~~  168 (339)
T cd08232          90 GTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHAVNRAGDLAGKR  168 (339)
T ss_pred             CCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHHHHhcCCCCCCE
Confidence                                0     01368999999999999999999999998876 5677799998854321     


Q ss_pred             ---------------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCC-CCccc
Q 048785          126 ---------------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARG-IPWST  187 (280)
Q Consensus       126 ---------------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~  187 (280)
                                     +|+.+|+ +|++++++ ++.++++++|+++++++++...... ....+++|++|||+|+ ..+..
T Consensus       169 VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~-~~~~~~vd~vld~~g~~~~~~~  247 (339)
T cd08232         169 VLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAY-AADKGDFDVVFEASGAPAALAS  247 (339)
T ss_pred             EEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhh-hccCCCccEEEECCCCHHHHHH
Confidence                           8889999 88888864 6677888899999998765431111 1233469999999996 45788


Q ss_pred             ccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeE--eccceecchhHHHHHH
Q 048785          188 FEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT--LIDSKHLLSKAEDAWA  265 (280)
Q Consensus       188 ~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~--~~~~~~~~~~~~~a~~  265 (280)
                      ++++|+++|+++.++..... .......+..++.++.+..  ...+.++++++++++|.+++  .+.++|+++++++|++
T Consensus       248 ~~~~L~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~  324 (339)
T cd08232         248 ALRVVRPGGTVVQVGMLGGP-VPLPLNALVAKELDLRGSF--RFDDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFA  324 (339)
T ss_pred             HHHHHhcCCEEEEEecCCCC-ccCcHHHHhhcceEEEEEe--cCHHHHHHHHHHHHcCCCCchhheeEEecHHHHHHHHH
Confidence            99999999999998743311 1111222344666665544  24667889999999998863  4678899999999999


Q ss_pred             HHhcCCCcCcEEEeC
Q 048785          266 KGADGHATGKIILEP  280 (280)
Q Consensus       266 ~~~~~~~~gkvvi~~  280 (280)
                      .+.++...||+|+++
T Consensus       325 ~~~~~~~~gkvvv~~  339 (339)
T cd08232         325 LAADRTRSVKVQLSF  339 (339)
T ss_pred             HHHhCCCceeEEEeC
Confidence            999888889999864

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.9e-32  Score=232.70  Aligned_cols=271  Identities=23%  Similarity=0.324  Sum_probs=212.8

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec-----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN-----   76 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-----   76 (280)
                      +++|.|.++++||+|++.++++|+.|+....|..+.   ..+|.++|+|++|+|+++|++++.+++||+|++...     
T Consensus        15 ~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~---~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~   91 (337)
T cd08261          15 VDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPF---ASYPRILGHELSGEVVEVGEGVAGLKVGDRVVVDPYISCGE   91 (337)
T ss_pred             EECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCc---CCCCcccccccEEEEEEeCCCCCCCCCCCEEEECCCCCCCC
Confidence            577889999999999999999999999988776542   245778999999999999999999999999987310     


Q ss_pred             -------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh------------
Q 048785           77 -------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG------------  125 (280)
Q Consensus        77 -------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~------------  125 (280)
                                         ....|+|++|+.++++ ++++|+++++++++++ ..++++++++ ...+            
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~  168 (337)
T cd08261          92 CYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGA  168 (337)
T ss_pred             ChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECC
Confidence                               1136899999999999 9999999999999877 4566888776 3322            


Q ss_pred             ---------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCC-CCcccccccc
Q 048785          126 ---------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARG-IPWSTFEPNL  192 (280)
Q Consensus       126 ---------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l  192 (280)
                               +|+.+|++|+++++ +++.++++++|++++++++...  ......+.++++|++|||+|+ ..+..+++++
T Consensus       169 g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l  248 (337)
T cd08261         169 GPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATGNPASMEEAVELV  248 (337)
T ss_pred             CHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHH
Confidence                     88999999998875 5778888899999999887655  223334556679999999987 4578889999


Q ss_pred             cCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeE--eccceecchhHHHHHHHHhcC
Q 048785          193 AENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT--LIDSKHLLSKAEDAWAKGADG  270 (280)
Q Consensus       193 ~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~--~~~~~~~~~~~~~a~~~~~~~  270 (280)
                      +++|+++.++..... ..+....+..++..+.+.. ....+.++.+++++++|.+++  .+...+++++++++++.+.++
T Consensus       249 ~~~G~~i~~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~  326 (337)
T cd08261         249 AHGGRVVLVGLSKGP-VTFPDPEFHKKELTILGSR-NATREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAP  326 (337)
T ss_pred             hcCCEEEEEcCCCCC-CccCHHHHHhCCCEEEEec-cCChhhHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcC
Confidence            999999988744321 1111222333444444432 345678899999999999987  677899999999999999988


Q ss_pred             -CCcCcEEEeC
Q 048785          271 -HATGKIILEP  280 (280)
Q Consensus       271 -~~~gkvvi~~  280 (280)
                       ...+|+|+++
T Consensus       327 ~~~~~k~v~~~  337 (337)
T cd08261         327 PGGVIKVLIEF  337 (337)
T ss_pred             CCceEEEEEeC
Confidence             4778999864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=100.00  E-value=2.5e-32  Score=231.98  Aligned_cols=274  Identities=25%  Similarity=0.342  Sum_probs=221.3

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe-------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI-------   74 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~-------   74 (280)
                      .+.|.|.+++++|+|++.++++|+.|.....|..+.  ...+|.++|+|++|+|+++|++++.+++||+|++.       
T Consensus        17 ~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~--~~~~~~~~g~~~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~   94 (338)
T cd08254          17 EEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPT--LTKLPLTLGHEIAGTVVEVGAGVTNFKVGDRVAVPAVIPCGA   94 (338)
T ss_pred             eccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcc--cCCCCEeccccccEEEEEECCCCccCCCCCEEEECCCCCCCC
Confidence            456788889999999999999999999988887641  23457789999999999999999999999999861       


Q ss_pred             -----------e------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh------------
Q 048785           75 -----------L------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG------------  125 (280)
Q Consensus        75 -----------~------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~------------  125 (280)
                                 .      +....|+|++|+.++.+.++++|++++++++++++..+.+||+++.....            
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~  174 (338)
T cd08254          95 CALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGL  174 (338)
T ss_pred             ChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECC
Confidence                       0      01135899999999999999999999999999999999999999865432            


Q ss_pred             ---------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCC-Cccccccccc
Q 048785          126 ---------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGI-PWSTFEPNLA  193 (280)
Q Consensus       126 ---------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~  193 (280)
                               +|+.+|++|++++++ ++.+.++++|.++++++++.. ...+..+.++++|+++||+|.. .+..++++++
T Consensus       175 g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~  254 (338)
T cd08254         175 GGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGTQPTFEDAQKAVK  254 (338)
T ss_pred             cHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHhh
Confidence                     888899999988864 778888889998888876544 2222445667899999999864 5888999999


Q ss_pred             CCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCc
Q 048785          194 ENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHAT  273 (280)
Q Consensus       194 ~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~  273 (280)
                      ++|+++.++..... ..+....+..++.++.+.. ....+.+..++++++++.+.+. .+.+++++++++++.+.+++..
T Consensus       255 ~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~~l~~~-~~~~~~~~~~~a~~~~~~~~~~  331 (338)
T cd08254         255 PGGRIVVVGLGRDK-LTVDLSDLIARELRIIGSF-GGTPEDLPEVLDLIAKGKLDPQ-VETRPLDEIPEVLERLHKGKVK  331 (338)
T ss_pred             cCCEEEEECCCCCC-CccCHHHHhhCccEEEEec-cCCHHHHHHHHHHHHcCCCccc-ceeEcHHHHHHHHHHHHcCCcc
Confidence            99999998754321 2223344455666666543 3457889999999999999876 6789999999999999999999


Q ss_pred             CcEEEeC
Q 048785          274 GKIILEP  280 (280)
Q Consensus       274 gkvvi~~  280 (280)
                      +|+++++
T Consensus       332 ~kvv~~~  338 (338)
T cd08254         332 GRVVLVP  338 (338)
T ss_pred             ceEEEeC
Confidence            9999875

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=100.00  E-value=1.3e-32  Score=232.69  Aligned_cols=275  Identities=20%  Similarity=0.266  Sum_probs=205.3

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee---cCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL---NHF   78 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~---~~~   78 (280)
                      +++|.|.++++||+||+.++++|++|.....+...  ....+|.++|||++|+|+++|  ++.+++||+|++..   +..
T Consensus        18 ~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~--~~~~~~~~~g~e~~G~V~~~~--~~~~~~Gd~V~~~~~~~~~~   93 (326)
T cd08289          18 KNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGK--IVKRYPFIPGIDLAGTVVESN--DPRFKPGDEVIVTSYDLGVS   93 (326)
T ss_pred             EEccCCCCCCCeEEEEEEEEecChHHhhhhcCCcc--ccCCCCcCcccceeEEEEEcC--CCCCCCCCEEEEcccccCCC
Confidence            57788889999999999999999999876543211  112457899999999999954  56799999998762   112


Q ss_pred             CCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhh-------h------------------hhhhCCCE
Q 048785           79 SGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA-------G------------------LAKLGNSH  133 (280)
Q Consensus        79 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~-------~------------------la~~~G~~  133 (280)
                      ..|+|++|+.++.+.++++|+++++++++.+++++.|||+++....       +                  +|+.+|++
T Consensus        94 ~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~  173 (326)
T cd08289          94 HHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYE  173 (326)
T ss_pred             CCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCCe
Confidence            3699999999999999999999999999999999999998874321       1                  88999999


Q ss_pred             EEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHH
Q 048785          134 VTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFA  212 (280)
Q Consensus       134 Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~  212 (280)
                      |+++++ +++.+.++++|++.++++++.....+....++++|++|||+|+..+..++++++++|+++.+|.......+..
T Consensus       174 v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~i~~g~~~~~~~~~~  253 (326)
T cd08289         174 VVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGGKTLAYLLSTLQYGGSVAVSGLTGGGEVETT  253 (326)
T ss_pred             EEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcHHHHHHHHHHhhcCCEEEEEeecCCCCCCcc
Confidence            999885 5788999999999998876543222222245679999999999888899999999999999985433222222


Q ss_pred             HhhhhccceeeEEEEEcC-----CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          213 WQKLTFSKKQLVPLLVIP-----KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ...+..++..+.+.....     ..+.+..+.+.+....+.+.+.++|+++++++||+.+.++...+|+++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~  326 (326)
T cd08289         254 VFPFILRGVNLLGIDSVECPMELRRRIWRRLATDLKPTQLLNEIKQEITLDELPEALKQILQGRVTGRTVVKL  326 (326)
T ss_pred             hhhhhhccceEEEEEeEecCchHHHHHHHHHHhhcCccccccccceEeeHHHHHHHHHHHhcCcccceEEEeC
Confidence            333445666666653211     11223333333332333345678999999999999999999999999874

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=100.00  E-value=1.4e-32  Score=233.50  Aligned_cols=274  Identities=32%  Similarity=0.443  Sum_probs=214.8

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN----   76 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~----   76 (280)
                      ++++|.|.++++||+|++.++++|++|+....+...    ..+|.++|+|++|+|+.+|++++.+++||+|+++..    
T Consensus        16 ~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~----~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~   91 (339)
T cd08249          16 VVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI----PSYPAILGCDFAGTVVEVGSGVTRFKVGDRVAGFVHGGNP   91 (339)
T ss_pred             ccCCCCCCCCCCEEEEEEEEEEcCchheeeeecccc----cCCCceeeeeeeEEEEEeCCCcCcCCCCCEEEEEeccccC
Confidence            358899999999999999999999999987655431    135678999999999999999999999999998742    


Q ss_pred             -CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhh--------------h----------------
Q 048785           77 -HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA--------------G----------------  125 (280)
Q Consensus        77 -~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~--------------~----------------  125 (280)
                       ...+|+|++|+.++.+.++++|+++++++++++++.+.+||+++....              +                
T Consensus        92 ~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~  171 (339)
T cd08249          92 NDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLA  171 (339)
T ss_pred             CCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHH
Confidence             123589999999999999999999999999999999999999985431              1                


Q ss_pred             --hhhhCCCEEEEEecCCcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCC-CCcccccccccC--CcEEE
Q 048785          126 --LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARG-IPWSTFEPNLAE--NGKVI  199 (280)
Q Consensus       126 --la~~~G~~Vi~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~--~g~~v  199 (280)
                        +|+.+|++|++++++++.+.++++|++++++++... ...+....++++|++||++|+ ..+..+++++++  +|+++
T Consensus       172 ~~~a~~~G~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v  251 (339)
T cd08249         172 IQLAKLAGYKVITTASPKNFDLVKSLGADAVFDYHDPDVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGGGKLV  251 (339)
T ss_pred             HHHHHHcCCeEEEEECcccHHHHHhcCCCEEEECCCchHHHHHHHhcCCCeeEEEEeeccchHHHHHHHHHhccCCCEEE
Confidence              888999999988877889999999999999887655 222333345779999999998 678899999999  99999


Q ss_pred             EeCCCchhhHHHHHhhhhccceeeEEEE------EcCCHHHHHHHHHHHHCCCeeEeccceec--chhHHHHHHHHhcCC
Q 048785          200 DLTPTPSAMLTFAWQKLTFSKKQLVPLL------VIPKGENLVFLVKLLKEGKIKTLIDSKHL--LSKAEDAWAKGADGH  271 (280)
Q Consensus       200 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~g~~~~~~~~~~~--~~~~~~a~~~~~~~~  271 (280)
                      .++......  .................      .......++.++++++++++.+.....++  ++++++|++.+.+++
T Consensus       252 ~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~  329 (339)
T cd08249         252 SLLPVPEET--EPRKGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPHPVRVVEGGLEGVQEGLDLLRKGK  329 (339)
T ss_pred             EecCCCccc--cCCCCceEEEEEeeeecccccccccchHHHHHHHHHHHHcCCccCCCceecCCcHHHHHHHHHHHHCCC
Confidence            998554322  00111111222111111      11223567788999999999876656777  999999999999988


Q ss_pred             -CcCcEEEeC
Q 048785          272 -ATGKIILEP  280 (280)
Q Consensus       272 -~~gkvvi~~  280 (280)
                       ..+|+|+++
T Consensus       330 ~~~~kvvv~~  339 (339)
T cd08249         330 VSGEKLVVRL  339 (339)
T ss_pred             ccceEEEEeC
Confidence             889999874

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=1.7e-32  Score=235.12  Aligned_cols=272  Identities=21%  Similarity=0.264  Sum_probs=214.8

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec-----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN-----   76 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-----   76 (280)
                      +++|.|.++++||+|++.++++|+.|+....|..+    ..+|.++|+|++|+|+++|++++.+++||+|++...     
T Consensus        16 ~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~   91 (363)
T cd08279          16 EEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP----APLPAVLGHEGAGVVEEVGPGVTGVKPGDHVVLSWIPACGT   91 (363)
T ss_pred             EEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC----CCCCccccccceEEEEEeCCCccccCCCCEEEECCCCCCCC
Confidence            57788999999999999999999999998887654    256779999999999999999999999999987310     


Q ss_pred             ---------------------------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHH
Q 048785           77 ---------------------------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTAL  117 (280)
Q Consensus        77 ---------------------------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~  117 (280)
                                                             ....|+|++|+.++.+.++++|+++++++++++++++.+||
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~~~~~~~ta~  171 (363)
T cd08279          92 CRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGV  171 (363)
T ss_pred             ChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCCCCChHHeehhcchhHHHH
Confidence                                                   01358999999999999999999999999999999999999


Q ss_pred             HHHHhhhh---------------------hhhhCCCE-EEEEecC-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCc
Q 048785          118 EALTQSAG---------------------LAKLGNSH-VTATCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRK  172 (280)
Q Consensus       118 ~~l~~~~~---------------------la~~~G~~-Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~  172 (280)
                      .++....+                     +|+.+|++ |++++++ ++.+.++++|++++++++...  ......+.+++
T Consensus       172 ~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~  251 (363)
T cd08279         172 GAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRG  251 (363)
T ss_pred             HHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCC
Confidence            98765433                     88899995 8888864 778888889999999877654  22333445677


Q ss_pred             ccEEEECCCC-CCcccccccccCCcEEEEeCCCch-hhHHHHHhhhhccceeeEEEEEc--CCHHHHHHHHHHHHCCCee
Q 048785          173 YDAVIHCARG-IPWSTFEPNLAENGKVIDLTPTPS-AMLTFAWQKLTFSKKQLVPLLVI--PKGENLVFLVKLLKEGKIK  248 (280)
Q Consensus       173 ~d~v~d~~g~-~~~~~~~~~l~~~g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~g~~~  248 (280)
                      +|++|||+++ ..+..++++++++|+++.++.... ....+....+..++..+.+....  ...+.++++++++++++++
T Consensus       252 vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~  331 (363)
T cd08279         252 ADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLK  331 (363)
T ss_pred             CCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecCcCcHHHHHHHHHHHHcCCCC
Confidence            9999999995 457889999999999999875432 22233333333344444443321  3467899999999999987


Q ss_pred             E--eccceecchhHHHHHHHHhcCCCcCcEE
Q 048785          249 T--LIDSKHLLSKAEDAWAKGADGHATGKII  277 (280)
Q Consensus       249 ~--~~~~~~~~~~~~~a~~~~~~~~~~gkvv  277 (280)
                      +  .+.++|+++++++||+.+.+++..+.++
T Consensus       332 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  362 (363)
T cd08279         332 LDELVTRRYSLDEINEAFADMLAGENARGVI  362 (363)
T ss_pred             cceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence            5  4678899999999999999887765544

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=2.3e-32  Score=232.98  Aligned_cols=274  Identities=22%  Similarity=0.250  Sum_probs=213.7

Q ss_pred             CCCCCCCCC-CCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec---
Q 048785            1 HVHVPVPTP-RKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN---   76 (280)
Q Consensus         1 ~~~~~~~~~-~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~---   76 (280)
                      ++++|.|+| .++||+|++.++++|++|+....|..+.   ..+|.++|||++|+|+++|++++.+++||+|++...   
T Consensus        14 ~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~   90 (345)
T cd08286          14 WEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPT---VTPGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCISSC   90 (345)
T ss_pred             EEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCC---CCCCceecccceEEEEEeccCccccCCCCEEEECCcCCC
Confidence            357788885 7999999999999999999998887643   245789999999999999999999999999987421   


Q ss_pred             ----------------------CCCCCcceeEEeeccc--ccccCCCCCChhhhcccchhHHHHHHHHHhhhh-------
Q 048785           77 ----------------------HFSGGGLAEFAMVKES--LTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-------  125 (280)
Q Consensus        77 ----------------------~~~~g~~~~~~~v~~~--~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-------  125 (280)
                                            ....|++++|+.++.+  .++++|+++++.+++.++..+++||.++....+       
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~v  170 (345)
T cd08286          91 GTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTV  170 (345)
T ss_pred             CCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHHHHHHHhhcCCCCCCEE
Confidence                                  1124899999999987  899999999999999999999999987644322       


Q ss_pred             --------------hhhhCC-CEEEEEecC-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCC-Ccc
Q 048785          126 --------------LAKLGN-SHVTATCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGI-PWS  186 (280)
Q Consensus       126 --------------la~~~G-~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~-~~~  186 (280)
                                    +|+.+| .+|++++++ ++.+.++++|++.+++++...  ......+.++++|++|||+|+. .+.
T Consensus       171 lI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~  250 (345)
T cd08286         171 AIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAVGIPATFE  250 (345)
T ss_pred             EEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECCCCHHHHH
Confidence                          889999 688887754 677888899999999887654  2233445667899999999864 477


Q ss_pred             cccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeE--eccceecchhHHHHH
Q 048785          187 TFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT--LIDSKHLLSKAEDAW  264 (280)
Q Consensus       187 ~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~--~~~~~~~~~~~~~a~  264 (280)
                      .+++.++++|+++.+|..... ..+....+..++.++.+...  ..+.+..++++++++.+++  ++.++|+++++++|+
T Consensus       251 ~~~~~l~~~g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~  327 (345)
T cd08286         251 LCQELVAPGGHIANVGVHGKP-VDLHLEKLWIKNITITTGLV--DTNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAY  327 (345)
T ss_pred             HHHHhccCCcEEEEecccCCC-CCcCHHHHhhcCcEEEeecC--chhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHH
Confidence            888999999999998854321 22233333445666655332  3367888999999999865  467899999999999


Q ss_pred             HHHhcCC--CcCcEEEeC
Q 048785          265 AKGADGH--ATGKIILEP  280 (280)
Q Consensus       265 ~~~~~~~--~~gkvvi~~  280 (280)
                      +.+.+..  ...|++|++
T Consensus       328 ~~~~~~~~~~~~k~~~~~  345 (345)
T cd08286         328 DTFSAAAKHKALKVIIDF  345 (345)
T ss_pred             HHHhccCCCCeeEEEEeC
Confidence            9988653  345888875

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=5.2e-32  Score=229.82  Aligned_cols=276  Identities=32%  Similarity=0.409  Sum_probs=223.7

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec-----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN-----   76 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-----   76 (280)
                      ++.+.|.++++|++|++.++++|++|+....|..+.  ....|.++|||++|+|+++|+++.++++||+|++...     
T Consensus        18 ~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~   95 (336)
T cd08276          18 VEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPP--PVKDPLIPLSDGAGEVVAVGEGVTRFKVGDRVVPTFFPNWLD   95 (336)
T ss_pred             EeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCC--CCCCCcccccceeEEEEEeCCCCcCCCCCCEEEEeccccccc
Confidence            356677789999999999999999999988776542  1235778999999999999999999999999988531     


Q ss_pred             -------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh------------------
Q 048785           77 -------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG------------------  125 (280)
Q Consensus        77 -------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~------------------  125 (280)
                                   ....|+|++|+.++.+.++++|+++++.+++.+++.+++||+++.....                  
T Consensus        96 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~  175 (336)
T cd08276          96 GPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLF  175 (336)
T ss_pred             ccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHH
Confidence                         1126889999999999999999999999999999999999999865432                  


Q ss_pred             ---hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCC-CC-cc-cccCCCCCcccEEEECCCCCCcccccccccCCcEE
Q 048785          126 ---LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKT-PD-GA-ALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKV  198 (280)
Q Consensus       126 ---la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~-~~-~~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~  198 (280)
                         +++..|++|++++++ ++.+.+.++|.+.+++.+. .. .. ....++++++|++|||+++..+..++++++++|++
T Consensus       176 ~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~G~~  255 (336)
T cd08276         176 ALQFAKAAGARVIATSSSDEKLERAKALGADHVINYRTTPDWGEEVLKLTGGRGVDHVVEVGGPGTLAQSIKAVAPGGVI  255 (336)
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEcCCcccCHHHHHHHHcCCCCCcEEEECCChHHHHHHHHhhcCCCEE
Confidence               888999999998865 7788888899999988766 43 22 33445667899999999988888999999999999


Q ss_pred             EEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEE
Q 048785          199 IDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       199 v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                      +.+|................++..+.+... ...+.+++++++++++.+.+.....|++++++++++.+.+++..+|+++
T Consensus       256 v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~  334 (336)
T cd08276         256 SLIGFLSGFEAPVLLLPLLTKGATLRGIAV-GSRAQFEAMNRAIEAHRIRPVIDRVFPFEEAKEAYRYLESGSHFGKVVI  334 (336)
T ss_pred             EEEccCCCCccCcCHHHHhhcceEEEEEec-CcHHHHHHHHHHHHcCCcccccCcEEeHHHHHHHHHHHHhCCCCceEEE
Confidence            999854432222233344556777776653 3577889999999999988777789999999999999998888889998


Q ss_pred             eC
Q 048785          279 EP  280 (280)
Q Consensus       279 ~~  280 (280)
                      ++
T Consensus       335 ~~  336 (336)
T cd08276         335 RV  336 (336)
T ss_pred             eC
Confidence            64

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=100.00  E-value=2.6e-32  Score=234.81  Aligned_cols=270  Identities=21%  Similarity=0.228  Sum_probs=210.5

Q ss_pred             CCCCCCCC-CCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec----
Q 048785            2 VHVPVPTP-RKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN----   76 (280)
Q Consensus         2 ~~~~~~~~-~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~----   76 (280)
                      +++|+|.+ +++||+||+.++++|++|+....|..+    ..+|.++|||++|+|+++|++++.+++||+|++...    
T Consensus        15 ~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~----~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g   90 (375)
T cd08282          15 EDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG----AEPGLVLGHEAMGEVEEVGSAVESLKVGDRVVVPFNVACG   90 (375)
T ss_pred             EeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC----CCCCceeccccEEEEEEeCCCCCcCCCCCEEEEeCCCCCC
Confidence            57888885 799999999999999999999888764    246789999999999999999999999999986211    


Q ss_pred             ------------------------------CCCCCcceeEEeeccc--ccccCCCCCChh---hhcccchhHHHHHHHHH
Q 048785           77 ------------------------------HFSGGGLAEFAMVKES--LTASRPLEVSAA---EGAGLPLAGLTALEALT  121 (280)
Q Consensus        77 ------------------------------~~~~g~~~~~~~v~~~--~~~~~p~~~~~~---~aa~~~~~~~~a~~~l~  121 (280)
                                                    ...+|+|++|+.+|.+  .++++|++++++   ++++++..+++||+++ 
T Consensus        91 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~~a~~~~~~~ta~~a~-  169 (375)
T cd08282          91 RCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLMLSDIFPTGWHGL-  169 (375)
T ss_pred             CCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCCCChhhhhheeeecchHHHHHHHH-
Confidence                                          0124899999999976  899999999998   5677888888999998 


Q ss_pred             hhhh---------------------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCCCCC-cc-cccCCCCCcccEE
Q 048785          122 QSAG---------------------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAV  176 (280)
Q Consensus       122 ~~~~---------------------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v  176 (280)
                      ..++                     +|+..|+ +|++++++ ++.+.++++|+. .+++++.. .. ....+. +++|++
T Consensus       170 ~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~i~~~~~-~~~d~v  247 (375)
T cd08282         170 ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI-PIDFSDGDPVEQILGLEP-GGVDRA  247 (375)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCe-EeccCcccHHHHHHHhhC-CCCCEE
Confidence            4433                     8889998 89887754 788888999984 56665544 22 223333 679999


Q ss_pred             EECCCCCC------------cccccccccCCcEEEEeCCCchh------------hHHHHHhhhhccceeeEEEEEcCCH
Q 048785          177 IHCARGIP------------WSTFEPNLAENGKVIDLTPTPSA------------MLTFAWQKLTFSKKQLVPLLVIPKG  232 (280)
Q Consensus       177 ~d~~g~~~------------~~~~~~~l~~~g~~v~~g~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  232 (280)
                      |||+|+..            +..++++++++|+++.+|.....            ...+....++.++..+.+.. ....
T Consensus       248 ~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  326 (375)
T cd08282         248 VDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGTGQ-APVK  326 (375)
T ss_pred             EECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCcccccccccccCccccccHHHHHhcCcEEEEec-CCch
Confidence            99999874            67889999999999877643211            12233344444555544432 3356


Q ss_pred             HHHHHHHHHHHCCCeeE--eccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          233 ENLVFLVKLLKEGKIKT--LIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       233 ~~~~~~~~~i~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      +.++.++++++++++++  ++.+.|+++++++|++.+.+++ .+|+|+++
T Consensus       327 ~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~kvvv~~  375 (375)
T cd08282         327 KYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRL-ETKVVIKP  375 (375)
T ss_pred             hhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCC-ceEEEeCC
Confidence            78899999999999986  4789999999999999999888 88999864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.9e-32  Score=232.16  Aligned_cols=270  Identities=28%  Similarity=0.348  Sum_probs=215.3

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec-----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN-----   76 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-----   76 (280)
                      +++|.|.+.++||+|++.++++|++|+....|..+.   ...|.++|+|++|+|+++|++++.+++||+|+++..     
T Consensus        16 ~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~   92 (332)
T cd08259          16 EEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPR---GKYPLILGHEIVGTVEEVGEGVERFKPGDRVILYYYIPCGK   92 (332)
T ss_pred             EEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCC---CCCCeeccccceEEEEEECCCCccCCCCCEEEECCCCCCcC
Confidence            577888999999999999999999999988886542   245789999999999999999999999999998631     


Q ss_pred             -------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh------------
Q 048785           77 -------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG------------  125 (280)
Q Consensus        77 -------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~------------  125 (280)
                                         ....|++++|+.++.+.++++|++++++++++++.++.+||+++.. ++            
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga  171 (332)
T cd08259          93 CEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALKR-AGVKKGDTVLVTGA  171 (332)
T ss_pred             ChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECC
Confidence                               1126899999999999999999999999999999999999999865 33            


Q ss_pred             ----------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccC
Q 048785          126 ----------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAE  194 (280)
Q Consensus       126 ----------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~  194 (280)
                                +++..|++|++++++ ++.+.+.++|.+.+++.++ ....+....  ++|++++|+|......+++++++
T Consensus       172 ~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~d~v~~~~g~~~~~~~~~~~~~  248 (332)
T cd08259         172 GGGVGIHAIQLAKALGARVIAVTRSPEKLKILKELGADYVIDGSK-FSEDVKKLG--GADVVIELVGSPTIEESLRSLNK  248 (332)
T ss_pred             CCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCcEEEecHH-HHHHHHhcc--CCCEEEECCChHHHHHHHHHhhc
Confidence                      778889999988864 6778888888888876554 212222122  69999999998888889999999


Q ss_pred             CcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcC
Q 048785          195 NGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATG  274 (280)
Q Consensus       195 ~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~g  274 (280)
                      +|+++.++........+......+++..+.+.. ....++++++++++++|.+++.+.+.|+++++++||+.+.++...+
T Consensus       249 ~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~  327 (332)
T cd08259         249 GGRLVLIGNVTPDPAPLRPGLLILKEIRIIGSI-SATKADVEEALKLVKEGKIKPVIDRVVSLEDINEALEDLKSGKVVG  327 (332)
T ss_pred             CCEEEEEcCCCCCCcCCCHHHHHhCCcEEEEec-CCCHHHHHHHHHHHHcCCCccceeEEEcHHHHHHHHHHHHcCCccc
Confidence            999998875432211111111223444444432 3467788999999999999888888999999999999999998889


Q ss_pred             cEEEe
Q 048785          275 KIILE  279 (280)
Q Consensus       275 kvvi~  279 (280)
                      |++++
T Consensus       328 kvv~~  332 (332)
T cd08259         328 RIVLK  332 (332)
T ss_pred             EEEeC
Confidence            99874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=2.5e-31  Score=224.00  Aligned_cols=275  Identities=40%  Similarity=0.616  Sum_probs=212.8

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCC
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSG   80 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   80 (280)
                      +++.|.|+++++||+|++.++++|++|+....|..+......+|..+|||++|+|+++|++++++++||+|++.......
T Consensus        16 ~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~   95 (319)
T cd08267          16 EVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPKGG   95 (319)
T ss_pred             cccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccCCCC
Confidence            35778888999999999999999999999887765321122456789999999999999999999999999987422235


Q ss_pred             CcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEe
Q 048785           81 GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATC  138 (280)
Q Consensus        81 g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~  138 (280)
                      |+|++++.++.+.++++|+++++++++.+++.+.+||+++.....                      +|+.+|++|++++
T Consensus        96 g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~  175 (319)
T cd08267          96 GALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVC  175 (319)
T ss_pred             ceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe
Confidence            899999999999999999999999999999999999999866532                      8889999999988


Q ss_pred             cCCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCC--cccccccccCCcEEEEeCCCchhhHHH-----
Q 048785          139 GARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIP--WSTFEPNLAENGKVIDLTPTPSAMLTF-----  211 (280)
Q Consensus       139 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~--~~~~~~~l~~~g~~v~~g~~~~~~~~~-----  211 (280)
                      ++++.+.++++|.+++++.+..... ...+.++++|++++|+++..  .......++++|+++.+|.........     
T Consensus       176 ~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~  254 (319)
T cd08267         176 STRNAELVRSLGADEVIDYTTEDFV-ALTAGGEKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGLLLVLLLLP  254 (319)
T ss_pred             CHHHHHHHHHcCCCEeecCCCCCcc-hhccCCCCCcEEEECCCchHHHHHHhhhccCCCCEEEEeccccccccccccccc
Confidence            6677888889999888876654433 44456678999999999533  333333499999999998543221111     


Q ss_pred             HHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEE
Q 048785          212 AWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                      ..........  .........+.+.+++++++++++.+.+.+.|+++++++|++.+.++...+|+++
T Consensus       255 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~~~~~~~~~~vvv  319 (319)
T cd08267         255 LTLGGGGRRL--KFFLAKPNAEDLEQLAELVEEGKLKPVIDSVYPLEDAPEAYRRLKSGRARGKVVI  319 (319)
T ss_pred             hhhccccceE--EEEEecCCHHHHHHHHHHHHCCCeeeeeeeEEcHHHHHHHHHHHhcCCCCCcEeC
Confidence            1111111222  2222233478899999999999999888899999999999999998887788874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=1.4e-32  Score=235.61  Aligned_cols=270  Identities=19%  Similarity=0.209  Sum_probs=214.1

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec-----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN-----   76 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-----   76 (280)
                      +++|.|.++++||+|++.++++|++|+....|...    ..+|.++|||++|+|+++|++++.+++||+|++...     
T Consensus        16 ~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~----~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd~Vv~~~~~~~~~   91 (365)
T cd05279          16 EEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP----TPLPVILGHEGAGIVESIGPGVTTLKPGDKVIPLFGPQCGK   91 (365)
T ss_pred             EEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC----CCCCcccccceeEEEEEeCCCcccCCCCCEEEEcCCCCCCC
Confidence            57788999999999999999999999998888653    245789999999999999999999999999987521     


Q ss_pred             ---------------------------------------C-CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHH
Q 048785           77 ---------------------------------------H-FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTA  116 (280)
Q Consensus        77 ---------------------------------------~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a  116 (280)
                                                             + ...|+|++|+.++.+.++++|+++++++++++++++.+|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~~~a~~~~~~~~ta  171 (365)
T cd05279          92 CKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTG  171 (365)
T ss_pred             ChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCCCCCHHHhhHhccchhHH
Confidence                                                   0 023789999999999999999999999999999999999


Q ss_pred             HHHHHhhhh---------------------hhhhCCCE-EEEEec-CCcHHHHHhcCCCeeecCCCC--C-cc-cccCCC
Q 048785          117 LEALTQSAG---------------------LAKLGNSH-VTATCG-ARNIEFVKSLGADEVLDYKTP--D-GA-ALKSPS  169 (280)
Q Consensus       117 ~~~l~~~~~---------------------la~~~G~~-Vi~~~~-~~~~~~~~~~g~~~v~~~~~~--~-~~-~~~~~~  169 (280)
                      |+++...++                     +|+.+|++ |+++++ +++.+.++++|+++++++++.  . .. ....+ 
T Consensus       172 ~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~-  250 (365)
T cd05279         172 YGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMT-  250 (365)
T ss_pred             HHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHh-
Confidence            998765433                     88899994 677774 578888899999999987665  3 12 22333 


Q ss_pred             CCcccEEEECCCC-CCccccccccc-CCcEEEEeCCCc-hhhHHHHHhhhhccceeeEEEEE--cCCHHHHHHHHHHHHC
Q 048785          170 GRKYDAVIHCARG-IPWSTFEPNLA-ENGKVIDLTPTP-SAMLTFAWQKLTFSKKQLVPLLV--IPKGENLVFLVKLLKE  244 (280)
Q Consensus       170 ~~~~d~v~d~~g~-~~~~~~~~~l~-~~g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~  244 (280)
                      ++++|++|||+|. ..+..++++++ ++|+++.+|... .....+....+ .++..+.+...  ....+.+..+++++++
T Consensus       251 ~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~l~~~  329 (365)
T cd05279         251 DGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDL-LTGRTIKGTVFGGWKSKDSVPKLVALYRQ  329 (365)
T ss_pred             CCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCCCceeeCHHHH-hcCCeEEEEeccCCchHhHHHHHHHHHHc
Confidence            4689999999986 55788999999 999999887543 22333334344 45556665433  2356789999999999


Q ss_pred             CCeeE--eccceecchhHHHHHHHHhcCCCcCcEEE
Q 048785          245 GKIKT--LIDSKHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       245 g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                      +.+.+  .+.++|+++++++||+.+.+++.. |+++
T Consensus       330 ~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~-~~~~  364 (365)
T cd05279         330 KKFPLDELITHVLPFEEINDGFDLMRSGESI-RTIL  364 (365)
T ss_pred             CCcchhHheeeeecHHHHHHHHHHHhCCCce-eeee
Confidence            99874  577899999999999998877654 6655

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.2e-32  Score=233.11  Aligned_cols=273  Identities=22%  Similarity=0.284  Sum_probs=217.9

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe-------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI-------   74 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~-------   74 (280)
                      ++.|.|.+.++||+||+.++++|++|+....|..+.   ..+|.++|+|++|.|+++|++++.+++||+|++.       
T Consensus        16 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd~V~~~~~~~~~~   92 (345)
T cd08260          16 REVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPD---VTLPHVPGHEFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGT   92 (345)
T ss_pred             EEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCC---CCCCeeeccceeEEEEEECCCCccCCCCCEEEECCCCCCCC
Confidence            467888899999999999999999999988887542   3557899999999999999999999999999861       


Q ss_pred             -----------------ecCCCCCcceeEEeeccc--ccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------
Q 048785           75 -----------------LNHFSGGGLAEFAMVKES--LTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------  125 (280)
Q Consensus        75 -----------------~~~~~~g~~~~~~~v~~~--~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------  125 (280)
                                       .+....|+|++|+.++.+  .++++|+++++++++.++..+++||+++....+          
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~  172 (345)
T cd08260          93 CPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVH  172 (345)
T ss_pred             CccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHHHHHHccCCCCCCEEEEE
Confidence                             011136899999999975  899999999999999999999999999854432          


Q ss_pred             -----------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCC-CC-cc-cccCCCCCcccEEEECCCC-CCccccc
Q 048785          126 -----------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKT-PD-GA-ALKSPSGRKYDAVIHCARG-IPWSTFE  189 (280)
Q Consensus       126 -----------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~-~~-~~-~~~~~~~~~~d~v~d~~g~-~~~~~~~  189 (280)
                                 +|+.+|++|+++++ +++.+.++++|++.+++++. .+ .. ......+ ++|++|||+|+ ..+..++
T Consensus       173 g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~-~~d~vi~~~g~~~~~~~~~  251 (345)
T cd08260         173 GCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGG-GAHVSVDALGIPETCRNSV  251 (345)
T ss_pred             CCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCC-CCCEEEEcCCCHHHHHHHH
Confidence                       88899999999885 47888888999999998876 33 22 2233344 79999999995 5578899


Q ss_pred             ccccCCcEEEEeCCCchhh--HHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEe--ccceecchhHHHHHH
Q 048785          190 PNLAENGKVIDLTPTPSAM--LTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTL--IDSKHLLSKAEDAWA  265 (280)
Q Consensus       190 ~~l~~~g~~v~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~--~~~~~~~~~~~~a~~  265 (280)
                      ++++++|+++.+|......  ..+.+..+..++..+.+... ...+.++.++++++++++.+.  +.+.++++++++|++
T Consensus       252 ~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~  330 (345)
T cd08260         252 ASLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHG-MPAHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALA  330 (345)
T ss_pred             HHhhcCCEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCc-CCHHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHH
Confidence            9999999999998543221  22233334455666665442 356788999999999998753  568899999999999


Q ss_pred             HHhcCCCcCcEEEe
Q 048785          266 KGADGHATGKIILE  279 (280)
Q Consensus       266 ~~~~~~~~gkvvi~  279 (280)
                      .+.++...+|+|++
T Consensus       331 ~~~~~~~~~~~v~~  344 (345)
T cd08260         331 AMDDYATAGITVIT  344 (345)
T ss_pred             HHHcCCCCceEEec
Confidence            99999989999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=100.00  E-value=1.2e-31  Score=228.91  Aligned_cols=277  Identities=32%  Similarity=0.485  Sum_probs=214.5

Q ss_pred             CCCCCCCCC-CCCeEEEEEeeeecChhhHHhHhccCCC------------CCCCCCCccccccceEEEEEeCCCCCCCCC
Q 048785            1 HVHVPVPTP-RKDEVLLKVEASSLNAFDWKIKKGVARP------------ILPRKFPYIPATDVAGEIIEVGSEVKNFKA   67 (280)
Q Consensus         1 ~~~~~~~~~-~~~evlV~v~~~~i~~~d~~~~~g~~~~------------~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   67 (280)
                      ++|++.|.| +++||+|++.++++|++|+....|...+            +....+|.++|||++|+|+++|++++.+++
T Consensus        18 ~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e~~G~v~~vG~~v~~~~~   97 (350)
T cd08248          18 LENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRDCSGVVVDIGSGVKSFEI   97 (350)
T ss_pred             ecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecceeEEEEEecCCCcccCCC
Confidence            467888888 4999999999999999999988774210            002356789999999999999999999999


Q ss_pred             CCEEEEeecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhh--------h--------------
Q 048785           68 GYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA--------G--------------  125 (280)
Q Consensus        68 Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~--------~--------------  125 (280)
                      ||+|++.......|+|++|+.++.+.++++|+++++++++.+++.+.+||+++.+..        +              
T Consensus        98 Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~  177 (350)
T cd08248          98 GDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGT  177 (350)
T ss_pred             CCEEEEecCCCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHH
Confidence            999998754345799999999999999999999999999999999999999974421        2              


Q ss_pred             ----hhhhCCCEEEEEecCCcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEE
Q 048785          126 ----LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVID  200 (280)
Q Consensus       126 ----la~~~G~~Vi~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~  200 (280)
                          +|+.+|++|++++++++.+.++++|.+.+++..... ...+  ...+++|++|||+|+.....++++++++|+++.
T Consensus       178 ~~~~~a~~~G~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l--~~~~~vd~vi~~~g~~~~~~~~~~l~~~G~~v~  255 (350)
T cd08248         178 FAIQLLKAWGAHVTTTCSTDAIPLVKSLGADDVIDYNNEDFEEEL--TERGKFDVILDTVGGDTEKWALKLLKKGGTYVT  255 (350)
T ss_pred             HHHHHHHHCCCeEEEEeCcchHHHHHHhCCceEEECCChhHHHHH--HhcCCCCEEEECCChHHHHHHHHHhccCCEEEE
Confidence                888999999988876777888899998888876543 2222  223579999999999888899999999999999


Q ss_pred             eCCCch---h-------hH--HHHHhhhhcc----ceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHH
Q 048785          201 LTPTPS---A-------ML--TFAWQKLTFS----KKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAW  264 (280)
Q Consensus       201 ~g~~~~---~-------~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~  264 (280)
                      ++....   .       ..  ..........    ...+.........+.+..+++++++|.+.+.+++.|+++++++++
T Consensus       256 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~  335 (350)
T cd08248         256 LVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKLVEDGKIKPVIDKVFPFEEVPEAY  335 (350)
T ss_pred             ecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCHHHHHHHHHHHhCCCEecccceeecHHHHHHHH
Confidence            873321   0       00  0111111111    111111112345678999999999999988888999999999999


Q ss_pred             HHHhcCCCcCcEEEe
Q 048785          265 AKGADGHATGKIILE  279 (280)
Q Consensus       265 ~~~~~~~~~gkvvi~  279 (280)
                      +.+.++...+|++++
T Consensus       336 ~~~~~~~~~~~vv~~  350 (350)
T cd08248         336 EKVESGHARGKTVIK  350 (350)
T ss_pred             HHHhcCCCceEEEeC
Confidence            999988878888864

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3.3e-32  Score=231.62  Aligned_cols=275  Identities=20%  Similarity=0.219  Sum_probs=211.4

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCC--------CCCCCCCccccccceEEEEEeCCCCCC-CCCCCEE
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARP--------ILPRKFPYIPATDVAGEIIEVGSEVKN-FKAGYNV   71 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~--------~~~~~~p~~~G~e~~G~V~~vG~~v~~-~~~Gd~V   71 (280)
                      ++++|.|+++++||+|++.++++|+.|+....|....        .....+|.++|+|++|+|+++|++++. +++||+|
T Consensus        13 ~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V   92 (341)
T cd08262          13 VRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDYGPGTERKLKVGTRV   92 (341)
T ss_pred             EEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEeCCCCcCCCCCCCEE
Confidence            3678999999999999999999999999988773210        012245788999999999999999997 9999999


Q ss_pred             EEeec--------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh------------
Q 048785           72 VAILN--------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG------------  125 (280)
Q Consensus        72 ~~~~~--------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~------------  125 (280)
                      ++...              ....|+|++|+.+|.+.++++|+++++++++ ++.++++||+++ ..++            
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~~-~~~~~~~g~~VlI~g~  170 (341)
T cd08262          93 TSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHAV-RRARLTPGEVALVIGC  170 (341)
T ss_pred             EecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHHH-HhcCCCCCCEEEEECC
Confidence            98621              1136899999999999999999999998876 667778999885 3332            


Q ss_pred             ---------hhhhCCCE-EEEEec-CCcHHHHHhcCCCeeecCCCCCc-----ccccCCCCCcccEEEECCCCC-Ccccc
Q 048785          126 ---------LAKLGNSH-VTATCG-ARNIEFVKSLGADEVLDYKTPDG-----AALKSPSGRKYDAVIHCARGI-PWSTF  188 (280)
Q Consensus       126 ---------la~~~G~~-Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~-----~~~~~~~~~~~d~v~d~~g~~-~~~~~  188 (280)
                               +|+.+|++ ++++++ +++.+.++++|++++++++....     ..+..+.++++|++|||+|+. .+..+
T Consensus       171 g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~  250 (341)
T cd08262         171 GPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGGPKPAVIFECVGAPGLIQQI  250 (341)
T ss_pred             CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHHhCCCCCCEEEECCCCHHHHHHH
Confidence                     88899996 555554 47888889999998998765431     122344567899999999984 57888


Q ss_pred             cccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeE--eccceecchhHHHHHHH
Q 048785          189 EPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT--LIDSKHLLSKAEDAWAK  266 (280)
Q Consensus       189 ~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~--~~~~~~~~~~~~~a~~~  266 (280)
                      +++++++|+++.+|....... .......+++.++.+.. ....+.+.++++++++|.+.+  .+.+.+++++++++++.
T Consensus       251 ~~~l~~~g~~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~  328 (341)
T cd08262         251 IEGAPPGGRIVVVGVCMESDN-IEPALAIRKELTLQFSL-GYTPEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEA  328 (341)
T ss_pred             HHHhccCCEEEEECCCCCCCc-cCHHHHhhcceEEEEEe-cccHHHHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHH
Confidence            999999999999985432110 01111134555655443 335668899999999999875  45689999999999999


Q ss_pred             HhcCCCcCcEEEe
Q 048785          267 GADGHATGKIILE  279 (280)
Q Consensus       267 ~~~~~~~gkvvi~  279 (280)
                      +.+++..+|+|++
T Consensus       329 ~~~~~~~~kvvv~  341 (341)
T cd08262         329 LRDPEHHCKILVD  341 (341)
T ss_pred             HhcCCCceEEEeC
Confidence            9999989999874

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=100.00  E-value=5.5e-32  Score=228.60  Aligned_cols=274  Identities=21%  Similarity=0.261  Sum_probs=209.7

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee---cC
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL---NH   77 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~---~~   77 (280)
                      ++++|.|.++++||+||+.++++|++|+....|..+.  +..+|.++|||++|+|++  +++..+++||+|++..   +.
T Consensus        16 ~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~V~~--~~~~~~~~Gd~V~~~~~~~~~   91 (323)
T TIGR02823        16 VETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGV--VRSYPMIPGIDAAGTVVS--SEDPRFREGDEVIVTGYGLGV   91 (323)
T ss_pred             EeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCC--CCCCCccceeeeEEEEEe--cCCCCCCCCCEEEEccCCCCC
Confidence            4688999999999999999999999999988887531  124578899999999998  5667899999998762   11


Q ss_pred             CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhh--------h-h----------------hhhhCCC
Q 048785           78 FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS--------A-G----------------LAKLGNS  132 (280)
Q Consensus        78 ~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~--------~-~----------------la~~~G~  132 (280)
                      ...|++++|+.+|.+.++++|+++++++++++++.+.+|+.++...        . .                +|+.+|+
T Consensus        92 ~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~  171 (323)
T TIGR02823        92 SHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY  171 (323)
T ss_pred             CCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC
Confidence            2368999999999999999999999999999999988998776321        1 1                8899999


Q ss_pred             EEEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHH
Q 048785          133 HVTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTF  211 (280)
Q Consensus       133 ~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~  211 (280)
                      +++++++ +++.+.++++|++.+++.++....... ..+.++|+++||+|+..+..++++++++|+++.+|.......+.
T Consensus       172 ~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  250 (323)
T TIGR02823       172 EVVASTGKAEEEDYLKELGASEVIDREDLSPPGKP-LEKERWAGAVDTVGGHTLANVLAQLKYGGAVAACGLAGGPDLPT  250 (323)
T ss_pred             eEEEEeCCHHHHHHHHhcCCcEEEccccHHHHHHH-hcCCCceEEEECccHHHHHHHHHHhCCCCEEEEEcccCCCCccc
Confidence            9888875 567788899999888886553321112 22235999999999888889999999999999998543322222


Q ss_pred             HHhhhhccceeeEEEEEc-C----CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          212 AWQKLTFSKKQLVPLLVI-P----KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ....+..++.++.+.... .    ..+.+..+.+++..+.+++. .+.|+++++++||+.+.+++..+|+++.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~a~~~~~~~~~~~k~vv~~  323 (323)
T TIGR02823       251 TVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLKPRNLESI-TREITLEELPEALEQILAGQHRGRTVVDV  323 (323)
T ss_pred             cHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhhcCCCcCc-eeeecHHHHHHHHHHHhCCCccceEEEeC
Confidence            222233455555554321 1    12345666777888887664 45899999999999999999999999864

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=100.00  E-value=4.5e-32  Score=231.00  Aligned_cols=271  Identities=28%  Similarity=0.358  Sum_probs=215.8

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec-----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN-----   76 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-----   76 (280)
                      ++.+.|++.+++|+||+.++++|+.|+.+..|..+   +...|.++|+|++|+|+++|++++.+++||+|++...     
T Consensus        15 ~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~---~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~   91 (343)
T cd08235          15 EEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHT---DLKPPRILGHEIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGE   91 (343)
T ss_pred             EEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCc---cCCCCcccccceEEEEEeeCCCCCCCCCCCEEEEccCCCCCC
Confidence            46788889999999999999999999998877653   1245678999999999999999999999999998521     


Q ss_pred             -------------------CCCCCcceeEEeecccc-----cccCCCCCChhhhcccchhHHHHHHHHHhhhh-------
Q 048785           77 -------------------HFSGGGLAEFAMVKESL-----TASRPLEVSAAEGAGLPLAGLTALEALTQSAG-------  125 (280)
Q Consensus        77 -------------------~~~~g~~~~~~~v~~~~-----~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-------  125 (280)
                                         ....|+|++|+.++.+.     ++++|+++++.+++++ ..+.+||+++... +       
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l~~~-~~~~g~~V  169 (343)
T cd08235          92 CHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALV-EPLACCINAQRKA-GIKPGDTV  169 (343)
T ss_pred             ChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHHHHhh-hHHHHHHHHHHhc-CCCCCCEE
Confidence                               12469999999999998     9999999999999876 6778999998442 2       


Q ss_pred             --------------hhhhCCCE-EEEEec-CCcHHHHHhcCCCeeecCCCCCc--ccccCCCCCcccEEEECCCCC-Ccc
Q 048785          126 --------------LAKLGNSH-VTATCG-ARNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCARGI-PWS  186 (280)
Q Consensus       126 --------------la~~~G~~-Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~-~~~  186 (280)
                                    +|+..|++ |+++++ +++.+.+.++|.++++++++...  .....+.++++|++|||+++. .+.
T Consensus       170 lV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~vd~vld~~~~~~~~~  249 (343)
T cd08235         170 LVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVATGSPEAQA  249 (343)
T ss_pred             EEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHhCCcCCCEEEECCCChHHHH
Confidence                          88899998 888775 47778888899999998876652  233345567799999999975 578


Q ss_pred             cccccccCCcEEEEeCCCchh-hHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCee--EeccceecchhHHHH
Q 048785          187 TFEPNLAENGKVIDLTPTPSA-MLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIK--TLIDSKHLLSKAEDA  263 (280)
Q Consensus       187 ~~~~~l~~~g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~--~~~~~~~~~~~~~~a  263 (280)
                      .++++++++|+++.++..... ...+......+++.++.+.. ....+.++.++++++++.++  +.+...|+++++++|
T Consensus       250 ~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a  328 (343)
T cd08235         250 QALELVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITGSY-AASPEDYKEALELIASGKIDVKDLITHRFPLEDIEEA  328 (343)
T ss_pred             HHHHHhhcCCEEEEEeccCCCCCcccCHHHHhhCceEEEEEe-cCChhhHHHHHHHHHcCCCChHHheeeEeeHHHHHHH
Confidence            889999999999998754321 12223344556777766544 34567788999999999986  345678999999999


Q ss_pred             HHHHhcCCCcCcEEEe
Q 048785          264 WAKGADGHATGKIILE  279 (280)
Q Consensus       264 ~~~~~~~~~~gkvvi~  279 (280)
                      ++.+.+++ .+|+|++
T Consensus       329 ~~~~~~~~-~~k~vi~  343 (343)
T cd08235         329 FELAADGK-SLKIVIT  343 (343)
T ss_pred             HHHHhCCC-cEEEEeC
Confidence            99999998 8899874

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=100.00  E-value=4.1e-32  Score=231.29  Aligned_cols=271  Identities=21%  Similarity=0.258  Sum_probs=213.0

Q ss_pred             CCCCCCCCC-CCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec----
Q 048785            2 VHVPVPTPR-KDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN----   76 (280)
Q Consensus         2 ~~~~~~~~~-~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~----   76 (280)
                      +++|+|.|. ++||+|++.++++|+.|+....|..+    ..+|.++|+|++|+|+++|++++.+++||+|++...    
T Consensus        15 ~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   90 (344)
T cd08284          15 EEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP----STPGFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPFTIACG   90 (344)
T ss_pred             EeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC----CCCCcccccceEEEEEeeCCCccccCCCCEEEEcccCCCC
Confidence            577888875 99999999999999999998877654    245689999999999999999999999999987421    


Q ss_pred             ------------------------CCCCCcceeEEeeccc--ccccCCCCCChhhhcccchhHHHHHHHHHhhhh-----
Q 048785           77 ------------------------HFSGGGLAEFAMVKES--LTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-----  125 (280)
Q Consensus        77 ------------------------~~~~g~~~~~~~v~~~--~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----  125 (280)
                                              ....|++++|+.++.+  .++++|++++++++++++.+++|||+++.. .+     
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~~ta~~~~~~-~~~~~~~  169 (344)
T cd08284          91 ECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYFGAKR-AQVRPGD  169 (344)
T ss_pred             CChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCchHHHHhhhHh-cCCccCC
Confidence                                    0125899999999965  999999999999999999999999999854 32     


Q ss_pred             ----------------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCC-C
Q 048785          126 ----------------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGI-P  184 (280)
Q Consensus       126 ----------------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~-~  184 (280)
                                      +|+.+|+ +|++++++ ++.+.++++|+. .++.+...  ......+.++++|++|||+++. .
T Consensus       170 ~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~l~~~~~~~~~dvvid~~~~~~~  248 (344)
T cd08284         170 TVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PINFEDAEPVERVREATEGRGADVVLEAVGGAAA  248 (344)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EEecCCcCHHHHHHHHhCCCCCCEEEECCCCHHH
Confidence                            8889997 89988754 678888889975 45555443  2233345667899999999974 5


Q ss_pred             cccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeE--eccceecchhHHH
Q 048785          185 WSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT--LIDSKHLLSKAED  262 (280)
Q Consensus       185 ~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~--~~~~~~~~~~~~~  262 (280)
                      +..++++++++|+++.+|................++..+.... ....+.++++++++.++++++  ++.++++++++++
T Consensus       249 ~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  327 (344)
T cd08284         249 LDLAFDLVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLRFGR-CPVRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPE  327 (344)
T ss_pred             HHHHHHhcccCCEEEEECcCCCCCccccHHHHhhcCcEEEEec-CCcchhHHHHHHHHHcCCCChHHhEeeeecHHHHHH
Confidence            8889999999999999985542222222223334555554332 346788999999999999875  4667899999999


Q ss_pred             HHHHHhcCCCcCcEEEeC
Q 048785          263 AWAKGADGHATGKIILEP  280 (280)
Q Consensus       263 a~~~~~~~~~~gkvvi~~  280 (280)
                      +++.+.+++. +|+|+.+
T Consensus       328 a~~~~~~~~~-~k~Vi~~  344 (344)
T cd08284         328 AYRLFDKRKV-LKVVLDP  344 (344)
T ss_pred             HHHHHhcCCc-eEEEecC
Confidence            9999988877 8999863

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=5.2e-32  Score=227.60  Aligned_cols=270  Identities=20%  Similarity=0.237  Sum_probs=210.3

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhH-hccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCC
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIK-KGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFS   79 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~-~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~   79 (280)
                      +++++.|+++++||+|++.++++|+.|+..+ .|..... ...+|.++|+|++|+|+++|++++.+++||+|+++    .
T Consensus         9 ~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~-~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~----~   83 (312)
T cd08269           9 VEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFV-YPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGL----S   83 (312)
T ss_pred             EEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcc-cCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEe----c
Confidence            3577888999999999999999999999887 6654211 11347789999999999999999999999999987    4


Q ss_pred             CCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCCE-EEEE
Q 048785           80 GGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNSH-VTAT  137 (280)
Q Consensus        80 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~~-Vi~~  137 (280)
                      .|+|++|+.++.+.++++|+++  ..++....++++|++++. ..+                     +|+.+|++ |+++
T Consensus        84 ~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~  160 (312)
T cd08269          84 GGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAI  160 (312)
T ss_pred             CCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence            6899999999999999999988  222222366778888875 332                     88999997 9888


Q ss_pred             ecC-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCC-CcccccccccCCcEEEEeCCCchhhHHHHH
Q 048785          138 CGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGI-PWSTFEPNLAENGKVIDLTPTPSAMLTFAW  213 (280)
Q Consensus       138 ~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~  213 (280)
                      +++ ++.++++++|++++++++...  ......+.++++|++|||+|+. .+..++++++++|+++.+|........+..
T Consensus       161 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~  240 (312)
T cd08269         161 DRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQDGPRPVPF  240 (312)
T ss_pred             CCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCCcccCH
Confidence            865 678888899999888866544  2333455667899999999864 478899999999999999854322233333


Q ss_pred             hhhhccceeeEEEEEc---CCHHHHHHHHHHHHCCCeeE--eccceecchhHHHHHHHHhcCCC-cCcEEE
Q 048785          214 QKLTFSKKQLVPLLVI---PKGENLVFLVKLLKEGKIKT--LIDSKHLLSKAEDAWAKGADGHA-TGKIIL  278 (280)
Q Consensus       214 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~-~gkvvi  278 (280)
                      ..+.+++.++.++...   ...+.+++++++++++.+++  ++.+.|+++++++|++.+.+++. ..|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  311 (312)
T cd08269         241 QTWNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI  311 (312)
T ss_pred             HHHhhcCCEEEEecccCccchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence            4556677776655422   13478999999999999986  45678999999999999998864 578876

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=4.7e-32  Score=233.84  Aligned_cols=276  Identities=23%  Similarity=0.282  Sum_probs=210.0

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCC----CCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPI----LPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~----~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-   75 (280)
                      ++++|.|.++++||+|++.++++|++|+....+.....    ....+|.++|||++|+|+++|++++.+++||+|++.. 
T Consensus        41 ~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~  120 (384)
T cd08265          41 VEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAEEM  120 (384)
T ss_pred             EEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEEECCC
Confidence            35789999999999999999999999998776421100    0124678999999999999999999999999998610 


Q ss_pred             -----------------------cCCCCCcceeEEeecccccccCCCCC------ChhhhcccchhHHHHHHHHHhh-hh
Q 048785           76 -----------------------NHFSGGGLAEFAMVKESLTASRPLEV------SAAEGAGLPLAGLTALEALTQS-AG  125 (280)
Q Consensus        76 -----------------------~~~~~g~~~~~~~v~~~~~~~~p~~~------~~~~aa~~~~~~~~a~~~l~~~-~~  125 (280)
                                             +....|+|++|+.++.+.++++|+.+      .+.++++++.++++||+++... .+
T Consensus       121 ~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~  200 (384)
T cd08265         121 MWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFIRGGG  200 (384)
T ss_pred             CCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccccccccCCCHHHhhhhhHHHHHHHHHHhhcCC
Confidence                                   01136899999999999999999863      2334666777888999998544 22


Q ss_pred             ---------------------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCCCC---C--cccccCCCCCcccEEE
Q 048785          126 ---------------------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYKTP---D--GAALKSPSGRKYDAVI  177 (280)
Q Consensus       126 ---------------------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~---~--~~~~~~~~~~~~d~v~  177 (280)
                                           +|+.+|+ +|++++++ ++.+.++++|+++++++++.   .  ...+..+.++++|+++
T Consensus       201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvl  280 (384)
T cd08265         201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQV  280 (384)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEE
Confidence                                 8889999 79998864 68888899999999987643   2  2234456677899999


Q ss_pred             ECCCCC--CcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeE--eccc
Q 048785          178 HCARGI--PWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT--LIDS  253 (280)
Q Consensus       178 d~~g~~--~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~--~~~~  253 (280)
                      ||+|+.  .+..++++++++|+++.+|..... ..+....+.++..++.+.........+.+++++++++.+++  ++.+
T Consensus       281 d~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~g~l~~~~~~~~  359 (384)
T cd08265         281 EAAGAPPATIPQMEKSIAINGKIVYIGRAATT-VPLHLEVLQVRRAQIVGAQGHSGHGIFPSVIKLMASGKIDMTKIITA  359 (384)
T ss_pred             ECCCCcHHHHHHHHHHHHcCCEEEEECCCCCC-CcccHHHHhhCceEEEEeeccCCcchHHHHHHHHHcCCCChHHheEE
Confidence            999974  477889999999999999854321 22222344455666666543334567899999999999975  3668


Q ss_pred             eecchhHHHHHHHHhcCCCcCcEEE
Q 048785          254 KHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       254 ~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                      .|+++++++|++.+.++ ..+|+++
T Consensus       360 ~~~~~~~~~a~~~~~~~-~~~kvvv  383 (384)
T cd08265         360 RFPLEGIMEAIKAASER-TDGKITI  383 (384)
T ss_pred             EeeHHHHHHHHHHHhcC-CCceEEe
Confidence            89999999999997665 5678876

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=100.00  E-value=7.9e-32  Score=228.20  Aligned_cols=270  Identities=32%  Similarity=0.402  Sum_probs=212.0

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCC
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSG   80 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   80 (280)
                      +++++.|.+.++|++||+.++++|+.|+....|..+.  ...+|.++|+|++|+|+++|++++.+++||+|++.    ..
T Consensus        20 ~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~--~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~----~~   93 (329)
T cd08250          20 IVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDP--GVKPPFDCGFEGVGEVVAVGEGVTDFKVGDAVATM----SF   93 (329)
T ss_pred             EEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCC--CCCCCcccCceeEEEEEEECCCCCCCCCCCEEEEe----cC
Confidence            3567888899999999999999999999988876532  13577899999999999999999999999999987    47


Q ss_pred             CcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEe
Q 048785           81 GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATC  138 (280)
Q Consensus        81 g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~  138 (280)
                      |+|++|+.++.+.++++|++  +.++++++.++.+||+++.+..+                      +++.+|++|++++
T Consensus        94 g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~  171 (329)
T cd08250          94 GAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTC  171 (329)
T ss_pred             cceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEe
Confidence            89999999999999999987  45677888999999999865432                      7888999999988


Q ss_pred             cC-CcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchh---------
Q 048785          139 GA-RNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSA---------  207 (280)
Q Consensus       139 ~~-~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~---------  207 (280)
                      ++ ++.+.++++|++.+++.+... ...+....++++|++|||+|+..+..++++++++|+++.+|.....         
T Consensus       172 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  251 (329)
T cd08250         172 SSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYESVGGEMFDTCVDNLALKGRLIVIGFISGYQSGTGPSPV  251 (329)
T ss_pred             CcHHHHHHHHHcCCceEEeCCCccHHHHHHHhcCCCCeEEEECCcHHHHHHHHHHhccCCeEEEEecccCCcccCccccc
Confidence            64 778888899998888776544 2222223346799999999987788999999999999998754321         


Q ss_pred             -hHHHHHhhhhccceeeEEEEEcC----CHHHHHHHHHHHHCCCeeEe--ccceecchhHHHHHHHHhcCCCcCcEEEe
Q 048785          208 -MLTFAWQKLTFSKKQLVPLLVIP----KGENLVFLVKLLKEGKIKTL--IDSKHLLSKAEDAWAKGADGHATGKIILE  279 (280)
Q Consensus       208 -~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~g~~~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  279 (280)
                       ...+. .....++..+.+.....    ..+.+.+++++++++.+.+.  ..+.++++++++|++.+.++...+|++++
T Consensus       252 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~  329 (329)
T cd08250         252 KGATLP-PKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSGKNIGKVVVE  329 (329)
T ss_pred             cccccc-HHHhhcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcCCCCceEEeC
Confidence             00111 12233455555544311    24567889999999999874  34569999999999999988888899874

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=9.6e-32  Score=226.63  Aligned_cols=271  Identities=24%  Similarity=0.247  Sum_probs=210.2

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec---CC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN---HF   78 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~---~~   78 (280)
                      .+.+.|.++++||+||+.++++|+.|+....|..+.   ...|.++|||++|+|+++|+  ..+++||+|+++..   ..
T Consensus        18 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~---~~~~~~~g~e~~G~v~~vG~--~~~~~Gd~V~~~~~~~~~~   92 (320)
T cd08243          18 REIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPS---VKFPRVLGIEAVGEVEEAPG--GTFTPGQRVATAMGGMGRT   92 (320)
T ss_pred             eecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC---CCCCccccceeEEEEEEecC--CCCCCCCEEEEecCCCCCC
Confidence            355667789999999999999999999988776532   24578899999999999995  57999999998632   12


Q ss_pred             CCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEE
Q 048785           79 SGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTA  136 (280)
Q Consensus        79 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~  136 (280)
                      ..|+|++|+.++.+.++++|++++++++++++.++.|||+++....+                      +|+.+|++|++
T Consensus        93 ~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~  172 (320)
T cd08243          93 FDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTA  172 (320)
T ss_pred             CCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEE
Confidence            35899999999999999999999999999999999999999866432                      88999999999


Q ss_pred             Eec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhh--HHHHH
Q 048785          137 TCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAM--LTFAW  213 (280)
Q Consensus       137 ~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~--~~~~~  213 (280)
                      +++ +++.+.+.++|++++++........+... ++++|++|||+|+..+..++++++++|+++.+|......  .....
T Consensus       173 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~  251 (320)
T cd08243         173 TTRSPERAALLKELGADEVVIDDGAIAEQLRAA-PGGFDKVLELVGTATLKDSLRHLRPGGIVCMTGLLGGQWTLEDFNP  251 (320)
T ss_pred             EeCCHHHHHHHHhcCCcEEEecCccHHHHHHHh-CCCceEEEECCChHHHHHHHHHhccCCEEEEEccCCCCcccCCcch
Confidence            885 47788888999988875422112222223 678999999999988889999999999999988532110  00001


Q ss_pred             hhh--hccceeeEEEEE-cCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEE
Q 048785          214 QKL--TFSKKQLVPLLV-IPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       214 ~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                      ...  ..++..+.+... ....+.++.++++++++.+++...+.|+++++++|++.+.++...+|+++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvvv  319 (320)
T cd08243         252 MDDIPSGVNLTLTGSSSGDVPQTPLQELFDFVAAGHLDIPPSKVFTFDEIVEAHAYMESNRAFGKVVV  319 (320)
T ss_pred             hhhhhhccceEEEecchhhhhHHHHHHHHHHHHCCceecccccEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence            111  134444444332 11245688899999999998877789999999999999998888889886

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PLN02702 L-idonate 5-dehydrogenase

Probab=100.00  E-value=6.7e-32  Score=231.55  Aligned_cols=273  Identities=22%  Similarity=0.233  Sum_probs=205.2

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe-------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI-------   74 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~-------   74 (280)
                      ++++.|+++++||+||+.++++|++|+....|.........+|.++|||++|+|+++|++++.+++||+|++.       
T Consensus        32 ~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~  111 (364)
T PLN02702         32 QPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVALEPGISCWR  111 (364)
T ss_pred             EeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEcCCCCCCC
Confidence            4677788899999999999999999999887643211112357789999999999999999999999999862       


Q ss_pred             ------------------ecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh-----------
Q 048785           75 ------------------LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-----------  125 (280)
Q Consensus        75 ------------------~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----------  125 (280)
                                        ......|+|++|+.++.+.++++|++++++++++. ..+.++|+++ ...+           
T Consensus       112 c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g  189 (364)
T PLN02702        112 CNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMC-EPLSVGVHAC-RRANIGPETNVLVMG  189 (364)
T ss_pred             CcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEEC
Confidence                              11123689999999999999999999999988763 2233577776 3322           


Q ss_pred             ----------hhhhCCCE-EEEEecC-CcHHHHHhcCCCeeecCCC--CC-cccc---cCCCCCcccEEEECCCC-CCcc
Q 048785          126 ----------LAKLGNSH-VTATCGA-RNIEFVKSLGADEVLDYKT--PD-GAAL---KSPSGRKYDAVIHCARG-IPWS  186 (280)
Q Consensus       126 ----------la~~~G~~-Vi~~~~~-~~~~~~~~~g~~~v~~~~~--~~-~~~~---~~~~~~~~d~v~d~~g~-~~~~  186 (280)
                                +|+.+|++ |++++++ ++.+.++++|++.+++++.  .. ...+   ....++++|++|||+|+ ..+.
T Consensus       190 ~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~  269 (364)
T PLN02702        190 AGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMS  269 (364)
T ss_pred             CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHH
Confidence                      88899984 6666644 6788889999998876542  22 1211   11335579999999995 5588


Q ss_pred             cccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCee--Eeccceecc--hhHHH
Q 048785          187 TFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIK--TLIDSKHLL--SKAED  262 (280)
Q Consensus       187 ~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~--~~~~~~~~~--~~~~~  262 (280)
                      .++++++++|+++.+|..... ..+......+++.++.+...  ....+..++++++++++.  +.+.++|++  +++++
T Consensus       270 ~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~  346 (364)
T PLN02702        270 TALEATRAGGKVCLVGMGHNE-MTVPLTPAAAREVDVVGVFR--YRNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEE  346 (364)
T ss_pred             HHHHHHhcCCEEEEEccCCCC-CcccHHHHHhCccEEEEecc--ChHHHHHHHHHHHcCCCCchHheEEEeccChHHHHH
Confidence            999999999999998853321 22233345567777777553  456788999999999885  456677665  79999


Q ss_pred             HHHHHhcCCCcCcEEEe
Q 048785          263 AWAKGADGHATGKIILE  279 (280)
Q Consensus       263 a~~~~~~~~~~gkvvi~  279 (280)
                      |++.+.+++..+|+++.
T Consensus       347 a~~~~~~~~~~~kvv~~  363 (364)
T PLN02702        347 AFETSARGGNAIKVMFN  363 (364)
T ss_pred             HHHHHhcCCCceEEEEe
Confidence            99999988888899985

>cd05281 TDH Threonine dehydrogenase

Probab=100.00  E-value=9.9e-32  Score=228.63  Aligned_cols=276  Identities=26%  Similarity=0.282  Sum_probs=209.3

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec-----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN-----   76 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-----   76 (280)
                      .+.|.|.++++|++||+.++++|+.|+.++.+.........+|.++|+|++|+|+.+|++++.+++||+|+++..     
T Consensus        16 ~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~   95 (341)
T cd05281          16 VEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVKVGDYVSAETHIVCGK   95 (341)
T ss_pred             EeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCCCCCEEEECCccCCCC
Confidence            467888899999999999999999999876543211011235678999999999999999999999999988510     


Q ss_pred             -------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh------------
Q 048785           77 -------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG------------  125 (280)
Q Consensus        77 -------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~------------  125 (280)
                                         ....|+|++|++++.+.++++|++++++. ++++..+.++++++.....            
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~-a~~~~~~~~a~~~~~~~~~~g~~vlV~g~g~  174 (341)
T cd05281          96 CYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPPEI-ASIQEPLGNAVHTVLAGDVSGKSVLITGCGP  174 (341)
T ss_pred             ChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCHHH-hhhhhHHHHHHHHHHhcCCCCCEEEEECCCH
Confidence                               11368999999999999999999998854 4566666788877642111            


Q ss_pred             -------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCC-CcccccccccC
Q 048785          126 -------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGI-PWSTFEPNLAE  194 (280)
Q Consensus       126 -------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~  194 (280)
                             +|+.+|+ +|++++++ ++.+.++++|++++++++..+ ........++++|++|||+|+. .+..+++++++
T Consensus       175 vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~  254 (341)
T cd05281         175 IGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTP  254 (341)
T ss_pred             HHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhcc
Confidence                   8889999 78888644 678888899999888876544 3223345567899999999875 47788999999


Q ss_pred             CcEEEEeCCCchhhHHHH-HhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCee--EeccceecchhHHHHHHHHhcCC
Q 048785          195 NGKVIDLTPTPSAMLTFA-WQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIK--TLIDSKHLLSKAEDAWAKGADGH  271 (280)
Q Consensus       195 ~g~~v~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~--~~~~~~~~~~~~~~a~~~~~~~~  271 (280)
                      +|+++.+|..... .... .....+++..+.+.......+.+..++++++++.+.  +.+.+.++++++++||+.+.+++
T Consensus       255 ~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~  333 (341)
T cd05281         255 GGRVSILGLPPGP-VDIDLNNLVIFKGLTVQGITGRKMFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGK  333 (341)
T ss_pred             CCEEEEEccCCCC-cccccchhhhccceEEEEEecCCcchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcCC
Confidence            9999998754321 1111 223555666666654333456678899999999975  45667899999999999999988


Q ss_pred             CcCcEEEeC
Q 048785          272 ATGKIILEP  280 (280)
Q Consensus       272 ~~gkvvi~~  280 (280)
                       .||+++++
T Consensus       334 -~gk~vv~~  341 (341)
T cd05281         334 -CGKVVLYP  341 (341)
T ss_pred             -CceEEecC
Confidence             89999875

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.9e-31  Score=226.77  Aligned_cols=276  Identities=30%  Similarity=0.412  Sum_probs=218.4

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      ++.+.|.+.+++|+|++.++++|++|+....|..+.  ...+|.++|||++|+|+++|++++.+++||+|++..      
T Consensus        18 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~   95 (342)
T cd08266          18 GDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGI--KLPLPHILGSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGR   95 (342)
T ss_pred             eecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCC--CCCCCeecccceEEEEEEeCCCCCCCCCCCEEEEcccccccc
Confidence            356677789999999999999999999988776531  124578999999999999999999999999998751      


Q ss_pred             ------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh------------
Q 048785           76 ------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG------------  125 (280)
Q Consensus        76 ------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~------------  125 (280)
                                        +....|++++|+.++.+.++++|+++++++++++++++.+||+++....+            
T Consensus        96 ~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~  175 (342)
T cd08266          96 CEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGA  175 (342)
T ss_pred             chhhccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence                              11236889999999999999999999999999999999999999755432            


Q ss_pred             ----------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccc
Q 048785          126 ----------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNL  192 (280)
Q Consensus       126 ----------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l  192 (280)
                                +++..|++|+.++++ ++.+.+..++.+.+++..+..  ......+.++++|++++++|+..+..+++++
T Consensus       176 ~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~g~~~~~~~~~~l  255 (342)
T cd08266         176 GSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHVGAATWEKSLKSL  255 (342)
T ss_pred             CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHh
Confidence                      778889999988864 677778888887777665433  2223334456799999999988888899999


Q ss_pred             cCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCC
Q 048785          193 AENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHA  272 (280)
Q Consensus       193 ~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~  272 (280)
                      +++|+++.++................++..+.+.. ......+..++++++++.+++.+.+.|+++++++|++.+.++..
T Consensus       256 ~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~  334 (342)
T cd08266         256 ARGGRLVTCGATTGYEAPIDLRHVFWRQLSILGST-MGTKAELDEALRLVFRGKLKPVIDSVFPLEEAAEAHRRLESREQ  334 (342)
T ss_pred             hcCCEEEEEecCCCCCCCcCHHHHhhcceEEEEEe-cCCHHHHHHHHHHHHcCCcccceeeeEcHHHHHHHHHHHHhCCC
Confidence            99999999874433222222223344556665544 34567888999999999998888889999999999999998888


Q ss_pred             cCcEEEeC
Q 048785          273 TGKIILEP  280 (280)
Q Consensus       273 ~gkvvi~~  280 (280)
                      .+|+++++
T Consensus       335 ~~kvv~~~  342 (342)
T cd08266         335 FGKIVLTP  342 (342)
T ss_pred             CceEEEeC
Confidence            89999874

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=100.00  E-value=8.9e-32  Score=229.14  Aligned_cols=271  Identities=25%  Similarity=0.287  Sum_probs=211.3

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      ++.|.|+++++||+||+.++++|+.|+....|..+    ...|.++|+|++|+|+++|++++.+++||+|++..      
T Consensus        15 ~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~----~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd~V~~~~~~~~~~   90 (343)
T cd08236          15 EDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA----YHPPLVLGHEFSGTVEEVGSGVDDLAVGDRVAVNPLLPCGK   90 (343)
T ss_pred             EecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC----CCCCcccCcceEEEEEEECCCCCcCCCCCEEEEcCCCCCCC
Confidence            56788899999999999999999999998877652    24567899999999999999999999999998851      


Q ss_pred             ------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh------------
Q 048785           76 ------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG------------  125 (280)
Q Consensus        76 ------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~------------  125 (280)
                                        +....|+|++|+.+|.+.++++|+++++++++++ ..+++||+++. ..+            
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~  168 (343)
T cd08236          91 CEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGA  168 (343)
T ss_pred             ChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECC
Confidence                              1124689999999999999999999999999887 46679999985 332            


Q ss_pred             ---------hhhhCCCE-EEEEec-CCcHHHHHhcCCCeeecCCCCCcc-cccCCCCCcccEEEECCCCC-Ccccccccc
Q 048785          126 ---------LAKLGNSH-VTATCG-ARNIEFVKSLGADEVLDYKTPDGA-ALKSPSGRKYDAVIHCARGI-PWSTFEPNL  192 (280)
Q Consensus       126 ---------la~~~G~~-Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~-~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l  192 (280)
                               +|+.+|++ |+++++ +++.++++++|++.+++++..... ......++++|++|||+|+. .+..++++|
T Consensus       169 g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l  248 (343)
T cd08236         169 GTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAAGSPATIEQALALA  248 (343)
T ss_pred             CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHh
Confidence                     88999996 888885 477788888999999887654422 23345566799999999864 578899999


Q ss_pred             cCCcEEEEeCCCchhh--HHHHHhhhhccceeeEEEEEcC----CHHHHHHHHHHHHCCCee--EeccceecchhHHHHH
Q 048785          193 AENGKVIDLTPTPSAM--LTFAWQKLTFSKKQLVPLLVIP----KGENLVFLVKLLKEGKIK--TLIDSKHLLSKAEDAW  264 (280)
Q Consensus       193 ~~~g~~v~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~g~~~--~~~~~~~~~~~~~~a~  264 (280)
                      +++|+++.+|......  ....+..+..++..+.+.....    ..+.+++++++++++++.  +.+...++++++++++
T Consensus       249 ~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  328 (343)
T cd08236         249 RPGGKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAF  328 (343)
T ss_pred             hcCCEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeeccccccchhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHH
Confidence            9999999998443210  1111222334555555544321    256788899999999975  4566889999999999


Q ss_pred             HHHhc-CCCcCcEEE
Q 048785          265 AKGAD-GHATGKIIL  278 (280)
Q Consensus       265 ~~~~~-~~~~gkvvi  278 (280)
                      +.+.+ +...+|+|+
T Consensus       329 ~~~~~~~~~~~k~v~  343 (343)
T cd08236         329 ERLADREEFSGKVLL  343 (343)
T ss_pred             HHHHcCCCCeeEEeC
Confidence            99998 667788874

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=100.00  E-value=1e-30  Score=223.41  Aligned_cols=276  Identities=26%  Similarity=0.397  Sum_probs=208.2

Q ss_pred             CCCCCCC---CCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCC-CCCCCCEEEEeecCC
Q 048785            3 HVPVPTP---RKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK-NFKAGYNVVAILNHF   78 (280)
Q Consensus         3 ~~~~~~~---~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~-~~~~Gd~V~~~~~~~   78 (280)
                      +++.|.|   ++++|+||+.++++|++|+....+....  ....|.++|+|++|+|+++|++++ .+++||+|++.....
T Consensus        17 ~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~~~~   94 (352)
T cd08247          17 TIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFH--FKVKEKGLGRDYSGVIVKVGSNVASEWKVGDEVCGIYPHP   94 (352)
T ss_pred             ccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccc--cccCCCccCceeEEEEEEeCcccccCCCCCCEEEEeecCC
Confidence            3444444   8999999999999999999876543221  112367899999999999999998 899999998863211


Q ss_pred             --CCCcceeEEeeccc----ccccCCCCCChhhhcccchhHHHHHHHHHhhh-h----------------------hhhh
Q 048785           79 --SGGGLAEFAMVKES----LTASRPLEVSAAEGAGLPLAGLTALEALTQSA-G----------------------LAKL  129 (280)
Q Consensus        79 --~~g~~~~~~~v~~~----~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~-~----------------------la~~  129 (280)
                        ..|+|++|+.++.+    .++++|+++++++++.++.++.|||+++.... +                      +|+.
T Consensus        95 ~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~  174 (352)
T cd08247          95 YGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKN  174 (352)
T ss_pred             CCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHh
Confidence              26899999999987    78999999999999999999999999986654 2                      7777


Q ss_pred             C-CC-EEEEEecCCcHHHHHhcCCCeeecCCCCC-----cccccCCC-CCcccEEEECCCC-CCccccccccc---CCcE
Q 048785          130 G-NS-HVTATCGARNIEFVKSLGADEVLDYKTPD-----GAALKSPS-GRKYDAVIHCARG-IPWSTFEPNLA---ENGK  197 (280)
Q Consensus       130 ~-G~-~Vi~~~~~~~~~~~~~~g~~~v~~~~~~~-----~~~~~~~~-~~~~d~v~d~~g~-~~~~~~~~~l~---~~g~  197 (280)
                      + |. +++++.++++.+.++++|+++++++++..     ...+.... ++++|++|||+|+ .....++++++   ++|+
T Consensus       175 ~~~~~~v~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~  254 (352)
T cd08247         175 HYNIGTVVGTCSSRSAELNKKLGADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKNGH  254 (352)
T ss_pred             cCCcceEEEEeChhHHHHHHHhCCCEEEecCCCcccchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCCCE
Confidence            6 45 67777766666677889999998876543     12233333 6789999999998 46778889999   9999


Q ss_pred             EEEeCCCch-----hh----------HHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHH
Q 048785          198 VIDLTPTPS-----AM----------LTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAED  262 (280)
Q Consensus       198 ~v~~g~~~~-----~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~  262 (280)
                      ++.++....     ..          .........+....+......+..+.+..+++++.++.+++.+.+.++++++++
T Consensus       255 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~  334 (352)
T cd08247         255 YVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFLLDPNADWIEKCAELIADGKVKPPIDSVYPFEDYKE  334 (352)
T ss_pred             EEEEeCCCcccccchhhhhccccchhhhhhhhhhcCCCcceEEEEecCCHHHHHHHHHHHhCCCeEeeeccEecHHHHHH
Confidence            997642211     00          011122333444444433322334678889999999999988888999999999


Q ss_pred             HHHHHhcCCCcCcEEEeC
Q 048785          263 AWAKGADGHATGKIILEP  280 (280)
Q Consensus       263 a~~~~~~~~~~gkvvi~~  280 (280)
                      |++.+.+++..||+++.+
T Consensus       335 a~~~~~~~~~~gkvvi~~  352 (352)
T cd08247         335 AFERLKSNRAKGKVVIKV  352 (352)
T ss_pred             HHHHHHcCCCCCcEEEeC
Confidence            999999998889999864

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=2e-31  Score=224.80  Aligned_cols=256  Identities=21%  Similarity=0.265  Sum_probs=200.2

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC---
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH---   77 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~---   77 (280)
                      ++++|.|+++++||+||+.++++|++|+....|..+      +|.++|||++|+|+++|++   +++||+|......   
T Consensus        14 ~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~------~~~~~G~e~~G~Vv~~G~~---~~~G~~V~~~~~~~~~   84 (319)
T cd08242          14 VEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP------FPGVPGHEFVGIVEEGPEA---ELVGKRVVGEINIACG   84 (319)
T ss_pred             EEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC------CCCccCceEEEEEEEeCCC---CCCCCeEEECCCcCCC
Confidence            357899999999999999999999999998877652      5678999999999999998   6799999742110   


Q ss_pred             ----------------------CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------
Q 048785           78 ----------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------  125 (280)
Q Consensus        78 ----------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------  125 (280)
                                            ...|+|++|+.++.+.++++|+++++++++.+ ....++|.++ ...+          
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~~~-~~~~~~~g~~vlV~  162 (319)
T cd08242          85 RCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALEIL-EQVPITPGDKVAVL  162 (319)
T ss_pred             CChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEE
Confidence                                  13689999999999999999999999888864 3334666655 3322          


Q ss_pred             -----------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCC-Ccccccccc
Q 048785          126 -----------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGI-PWSTFEPNL  192 (280)
Q Consensus       126 -----------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l  192 (280)
                                 +|+.+|++|+++++ +++.++++++|++.+++++..       +.++++|++|||+|+. .+..+++++
T Consensus       163 g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~~~~~d~vid~~g~~~~~~~~~~~l  235 (319)
T cd08242         163 GDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAE-------SEGGGFDVVVEATGSPSGLELALRLV  235 (319)
T ss_pred             CCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCcccc-------ccCCCCCEEEECCCChHHHHHHHHHh
Confidence                       88999999998885 478899999999888776432       3556799999999874 578889999


Q ss_pred             cCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCe--eEeccceecchhHHHHHHHHhcC
Q 048785          193 AENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKI--KTLIDSKHLLSKAEDAWAKGADG  270 (280)
Q Consensus       193 ~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~--~~~~~~~~~~~~~~~a~~~~~~~  270 (280)
                      +++|+++..+.... ...+....+.+++.++.+...    ..+++++++++++++  .+.+.+.|+++++++||+.+.++
T Consensus       236 ~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~  310 (319)
T cd08242         236 RPRGTVVLKSTYAG-PASFDLTKAVVNEITLVGSRC----GPFAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEP  310 (319)
T ss_pred             hcCCEEEEEcccCC-CCccCHHHheecceEEEEEec----ccHHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcC
Confidence            99999998653222 122334445556666665432    127888999999999  56678999999999999999877


Q ss_pred             CCcCcEEEeC
Q 048785          271 HATGKIILEP  280 (280)
Q Consensus       271 ~~~gkvvi~~  280 (280)
                      . .+|+++++
T Consensus       311 ~-~~k~vi~~  319 (319)
T cd08242         311 G-ALKVLLRP  319 (319)
T ss_pred             C-ceEEEeCC
Confidence            5 57999874

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=8.4e-31  Score=221.36  Aligned_cols=277  Identities=32%  Similarity=0.433  Sum_probs=219.4

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCC
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSG   80 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   80 (280)
                      +++.|.|++.+++|+||+.++++|++|+....|....   ...|.++|||++|+|+.+|++++.+++||+|++..+....
T Consensus        17 ~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~---~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~   93 (325)
T cd08271          17 LEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA---WSYPHVPGVDGAGVVVAVGAKVTGWKVGDRVAYHASLARG   93 (325)
T ss_pred             EeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC---CCCCcccccceEEEEEEeCCCCCcCCCCCEEEeccCCCCC
Confidence            3577888999999999999999999999887765431   1236789999999999999999999999999987543346


Q ss_pred             CcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEe
Q 048785           81 GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATC  138 (280)
Q Consensus        81 g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~  138 (280)
                      |+|++++.++.+.++++|+++++.+++.+++.+.+|++++.+..+                      +++..|++|+.+.
T Consensus        94 ~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~~~~  173 (325)
T cd08271          94 GSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC  173 (325)
T ss_pred             ccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEE
Confidence            899999999999999999999999999999999999999865432                      7888999988877


Q ss_pred             cCCcHHHHHhcCCCeeecCCCCC-c-ccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchh-hHHHHHhh
Q 048785          139 GARNIEFVKSLGADEVLDYKTPD-G-AALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSA-MLTFAWQK  215 (280)
Q Consensus       139 ~~~~~~~~~~~g~~~v~~~~~~~-~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~-~~~~~~~~  215 (280)
                      ++++.+.+.++|++.+++..... . .......++++|++++|+++.....++++++++|+++.++..... ........
T Consensus       174 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~  253 (325)
T cd08271         174 SKRNFEYVKSLGADHVIDYNDEDVCERIKEITGGRGVDAVLDTVGGETAAALAPTLAFNGHLVCIQGRPDASPDPPFTRA  253 (325)
T ss_pred             cHHHHHHHHHcCCcEEecCCCccHHHHHHHHcCCCCCcEEEECCCcHhHHHHHHhhccCCEEEEEcCCCCCcchhHHhhc
Confidence            66777888889998888766544 2 233344567899999999988777889999999999988643221 11222234


Q ss_pred             hhccceeeEEEEEc-------CCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          216 LTFSKKQLVPLLVI-------PKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       216 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      +.+++..+......       ..++.+.+++++++++.+++...+.|+++++.++++.+.++...+|+++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~~kiv~~~  325 (325)
T cd08271         254 LSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLEPLVIEVLPFEQLPEALRALKDRHTRGKIVVTI  325 (325)
T ss_pred             ceEEEEEecccccccchhhHHHHHHHHHHHHHHHHCCCeeeccceEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence            45555555443221       123456788899999999887778999999999999999888889999874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=2.7e-31  Score=226.34  Aligned_cols=272  Identities=22%  Similarity=0.246  Sum_probs=208.1

Q ss_pred             CCCCCCCCC-CCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec---
Q 048785            1 HVHVPVPTP-RKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN---   76 (280)
Q Consensus         1 ~~~~~~~~~-~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~---   76 (280)
                      +++.|.|.| +++||+||+.++++|++|+....|..+    ...|.++|||++|+|+++|++++.+++||+|++...   
T Consensus        14 ~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~   89 (345)
T cd08287          14 VEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSP----TRAPAPIGHEFVGVVEEVGSEVTSVKPGDFVIAPFAISD   89 (345)
T ss_pred             EEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCC----CCCCcccccceEEEEEEeCCCCCccCCCCEEEeccccCC
Confidence            357788886 899999999999999999998887754    245789999999999999999999999999987211   


Q ss_pred             ---------------------CCCCCcceeEEeeccc--ccccCCCCCChhhhc-----ccchhHHHHHHHHHhhhh---
Q 048785           77 ---------------------HFSGGGLAEFAMVKES--LTASRPLEVSAAEGA-----GLPLAGLTALEALTQSAG---  125 (280)
Q Consensus        77 ---------------------~~~~g~~~~~~~v~~~--~~~~~p~~~~~~~aa-----~~~~~~~~a~~~l~~~~~---  125 (280)
                                           ...+|+|++|+.+|.+  .++++|++++++.+.     ++...+++||+++. .++   
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~~~~a~~~~~-~~~~~~  168 (345)
T cd08287          90 GTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVMGTGHHAAV-SAGVRP  168 (345)
T ss_pred             CCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcHHHHHHHHHH-hcCCCC
Confidence                                 1234899999999975  899999999872221     22256778888874 222   


Q ss_pred             ------------------hhhhCCCE-EEEEecC-CcHHHHHhcCCCeeecCCCCC-c-ccccCCCCCcccEEEECCCC-
Q 048785          126 ------------------LAKLGNSH-VTATCGA-RNIEFVKSLGADEVLDYKTPD-G-AALKSPSGRKYDAVIHCARG-  182 (280)
Q Consensus       126 ------------------la~~~G~~-Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~-~-~~~~~~~~~~~d~v~d~~g~-  182 (280)
                                        +|+.+|++ +++++++ ++.+.++++|++.+++++... . .....+.++++|+++||+|+ 
T Consensus       169 g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~il~~~g~~  248 (345)
T cd08287         169 GSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELTGGVGADAVLECVGTQ  248 (345)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCCCCEEEECCCCH
Confidence                              88999994 7777765 578888999999999987655 2 23344566789999999986 


Q ss_pred             CCcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeE--eccceecchhH
Q 048785          183 IPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT--LIDSKHLLSKA  260 (280)
Q Consensus       183 ~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~--~~~~~~~~~~~  260 (280)
                      ..+..++++++++|+++.++.... ...+.......++..+.+.. ....+.++++++++.++++++  ++.++++++++
T Consensus       249 ~~~~~~~~~l~~~g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~  326 (345)
T cd08287         249 ESMEQAIAIARPGGRVGYVGVPHG-GVELDVRELFFRNVGLAGGP-APVRRYLPELLDDVLAGRINPGRVFDLTLPLDEV  326 (345)
T ss_pred             HHHHHHHHhhccCCEEEEecccCC-CCccCHHHHHhcceEEEEec-CCcHHHHHHHHHHHHcCCCCHHHhEEeeecHHHH
Confidence            458899999999999998875442 11222223344666665533 345678999999999999876  46788999999


Q ss_pred             HHHHHHHhcCCCcCcEEEeC
Q 048785          261 EDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       261 ~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ++|++.+.++... |++|++
T Consensus       327 ~~a~~~~~~~~~~-k~~~~~  345 (345)
T cd08287         327 AEGYRAMDERRAI-KVLLRP  345 (345)
T ss_pred             HHHHHHHhCCCce-EEEeCC
Confidence            9999998876654 998864

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=6.4e-31  Score=222.64  Aligned_cols=262  Identities=27%  Similarity=0.337  Sum_probs=208.4

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      ++.+.|.++++||+||+.++++|++|+....|..+.   ...|.++|||++|+|+++|++++.+++||+|++..      
T Consensus        20 ~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~   96 (329)
T cd08298          20 TEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP---PKLPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCG   96 (329)
T ss_pred             EeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCC---CCCCccccccccEEEEEECCCCCCCcCCCEEEEeccCCCCC
Confidence            356677789999999999999999999988887542   24578999999999999999999999999997621      


Q ss_pred             -------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh-----------
Q 048785           76 -------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-----------  125 (280)
Q Consensus        76 -------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----------  125 (280)
                                         +....|+|++|+.++.+.++++|+++++.+++.+++.+.+||+++ ..++           
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g  175 (329)
T cd08298          97 ECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYG  175 (329)
T ss_pred             CChhHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEEC
Confidence                               111368999999999999999999999999999999999999998 5433           


Q ss_pred             ----------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCC-CCccccccccc
Q 048785          126 ----------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARG-IPWSTFEPNLA  193 (280)
Q Consensus       126 ----------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~  193 (280)
                                +++..|++|++++++ ++.+.++++|++.+++.+..        .++++|+++++++. ..++.++++++
T Consensus       176 ~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~vD~vi~~~~~~~~~~~~~~~l~  247 (329)
T cd08298         176 FGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDL--------PPEPLDAAIIFAPVGALVPAALRAVK  247 (329)
T ss_pred             CcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCcc--------CCCcccEEEEcCCcHHHHHHHHHHhh
Confidence                      888999999998864 78888889999888766432        24569999998764 45889999999


Q ss_pred             CCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCc
Q 048785          194 ENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHAT  273 (280)
Q Consensus       194 ~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~  273 (280)
                      ++|+++.+|........+.... ..++..+.+.. ....+.++.++++++++.+++. .++|+++++++|++.+.+++..
T Consensus       248 ~~G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~-~~~~~~~~~~~~l~~~~~l~~~-~~~~~~~~~~~a~~~~~~~~~~  324 (329)
T cd08298         248 KGGRVVLAGIHMSDIPAFDYEL-LWGEKTIRSVA-NLTRQDGEEFLKLAAEIPIKPE-VETYPLEEANEALQDLKEGRIR  324 (329)
T ss_pred             cCCEEEEEcCCCCCCCccchhh-hhCceEEEEec-CCCHHHHHHHHHHHHcCCCCce-EEEEeHHHHHHHHHHHHcCCCc
Confidence            9999998874321111112222 23444454433 3467788999999999998874 5789999999999999999888


Q ss_pred             CcEEE
Q 048785          274 GKIIL  278 (280)
Q Consensus       274 gkvvi  278 (280)
                      ||+++
T Consensus       325 ~~~v~  329 (329)
T cd08298         325 GAAVL  329 (329)
T ss_pred             ceeeC
Confidence            89874

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.98  E-value=3.9e-30  Score=215.57  Aligned_cols=270  Identities=36%  Similarity=0.550  Sum_probs=214.7

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      ++.+.|.++++||+|++.++++|+.|+....|.........+|..+|||++|+|+++|++++.+++||+|+++......|
T Consensus        18 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~G~~V~~~~~~~~~g   97 (309)
T cd05289          18 ADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTGFKVGDEVFGMTPFTRGG   97 (309)
T ss_pred             cccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCCCCCCCEEEEccCCCCCC
Confidence            46677778999999999999999999998877642111224578999999999999999999999999999873222268


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEec
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCG  139 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~  139 (280)
                      +|++|+.++...++++|+++++..++.+++.+.+||+++.....                      +++..|++|+++++
T Consensus        98 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~  177 (309)
T cd05289          98 AYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATAS  177 (309)
T ss_pred             cceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEec
Confidence            99999999999999999999999999999999999999866432                      78889999998886


Q ss_pred             CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhhhcc
Q 048785          140 ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFS  219 (280)
Q Consensus       140 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~  219 (280)
                      +.+.+.++++|.+.+++.+......  ...++++|+++||+++.....++++++++|+++.++.......     ....+
T Consensus       178 ~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~-----~~~~~  250 (309)
T cd05289         178 AANADFLRSLGADEVIDYTKGDFER--AAAPGGVDAVLDTVGGETLARSLALVKPGGRLVSIAGPPPAEQ-----AAKRR  250 (309)
T ss_pred             chhHHHHHHcCCCEEEeCCCCchhh--ccCCCCceEEEECCchHHHHHHHHHHhcCcEEEEEcCCCcchh-----hhhhc
Confidence            4477888889988888766544222  3456679999999999888899999999999999885443211     11223


Q ss_pred             ceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEE
Q 048785          220 KKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                      +..+......+..+.+.+++++++++.+.+.+++.|++++++++++.+.++...+|+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~  309 (309)
T cd05289         251 GVRAGFVFVEPDGEQLAELAELVEAGKLRPVVDRVFPLEDAAEAHERLESGHARGKVVL  309 (309)
T ss_pred             cceEEEEEecccHHHHHHHHHHHHCCCEEEeeccEEcHHHHHHHHHHHHhCCCCCcEeC
Confidence            33333333223367899999999999998888899999999999999998887788874

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.98  E-value=9.3e-31  Score=220.22  Aligned_cols=271  Identities=26%  Similarity=0.336  Sum_probs=213.4

Q ss_pred             CCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCCc
Q 048785            3 HVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGG   82 (280)
Q Consensus         3 ~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~   82 (280)
                      +.+.|.+.++||+|++.++++|+.|+....|..+.    .+|.++|||++|+|+.+|++++.+++||+|+++.   ..|+
T Consensus        18 ~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~----~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~---~~g~   90 (320)
T cd05286          18 DVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL----PLPFVLGVEGAGVVEAVGPGVTGFKVGDRVAYAG---PPGA   90 (320)
T ss_pred             ecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC----CCCccCCcceeEEEEEECCCCCCCCCCCEEEEec---CCCc
Confidence            45556688999999999999999999988776542    4567899999999999999999999999999872   2689


Q ss_pred             ceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEecC
Q 048785           83 LAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCGA  140 (280)
Q Consensus        83 ~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~~  140 (280)
                      +++++.++.+.++++|++++..+++.++..+++||+++....+                      +++.+|++|++++++
T Consensus        91 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~  170 (320)
T cd05286          91 YAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSS  170 (320)
T ss_pred             eeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence            9999999999999999999999999999999999999865432                      888999999999864


Q ss_pred             -CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhhh
Q 048785          141 -RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLT  217 (280)
Q Consensus       141 -~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~  217 (280)
                       ++.+.++++|++++++.....  ......+.++++|++|||+++.....++++++++|+++.+|........+....+.
T Consensus       171 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~  250 (320)
T cd05286         171 EEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVGKDTFEGSLDSLRPRGTLVSFGNASGPVPPFDLLRLS  250 (320)
T ss_pred             HHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECCCcHhHHHHHHhhccCcEEEEEecCCCCCCccCHHHHH
Confidence             778888889999888776544  22334456678999999999988888999999999999987433211111111121


Q ss_pred             ccceeeEEEEE---cC----CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          218 FSKKQLVPLLV---IP----KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       218 ~~~~~~~~~~~---~~----~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      .++..+.....   ..    ..+.+..+++++.++.+.+...+.|++++++++++.+.++...+|+++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~~  320 (320)
T cd05286         251 KGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKVEIGKRYPLADAAQAHRDLESRKTTGKLLLIP  320 (320)
T ss_pred             hcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCcccceEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            23333332211   11    12445678899999999877778999999999999999988889999875

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.98  E-value=1.5e-30  Score=220.97  Aligned_cols=272  Identities=30%  Similarity=0.381  Sum_probs=211.3

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +++|.|.+.+++|+|++.++++|++|+....|..+.   ..+|.++|||++|+|+++|++++.+++||+|++.......|
T Consensus        21 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~---~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~g   97 (336)
T cd08252          21 IELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPV---PGQPKILGWDASGVVEAVGSEVTLFKVGDEVYYAGDITRPG   97 (336)
T ss_pred             ccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCC---CCCCcccccceEEEEEEcCCCCCCCCCCCEEEEcCCCCCCc
Confidence            467888889999999999999999999987775431   24567899999999999999999999999999864222468


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhh---------h------------------hhhhCC-CE
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA---------G------------------LAKLGN-SH  133 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~---------~------------------la~~~G-~~  133 (280)
                      +|++|+.++.+.++++|+++++++++.+++.+.+||+++...+         +                  +|+.+| ++
T Consensus        98 ~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~  177 (336)
T cd08252          98 SNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLT  177 (336)
T ss_pred             cceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCcE
Confidence            9999999999999999999999999999999999999874421         2                  888999 89


Q ss_pred             EEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCC-CCcccccccccCCcEEEEeCCCchhhHHH
Q 048785          134 VTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARG-IPWSTFEPNLAENGKVIDLTPTPSAMLTF  211 (280)
Q Consensus       134 Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~  211 (280)
                      |+++++ +++.+.++++|++++++++......+....++++|++|||+|+ ..+..++++++++|+++.+|....   .+
T Consensus       178 v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~---~~  254 (336)
T cd08252         178 VIATASRPESIAWVKELGADHVINHHQDLAEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQE---PL  254 (336)
T ss_pred             EEEEcCChhhHHHHHhcCCcEEEeCCccHHHHHHhhCCCCCCEEEEccCcHHHHHHHHHHhcCCCEEEEecCCCC---cc
Confidence            999986 4788888999999998876422222223344689999999996 568899999999999999985421   11


Q ss_pred             HHhhhhccceeeEEEEEc-----------CCHHHHHHHHHHHHCCCeeEecc---ceecchhHHHHHHHHhcCCCcCcEE
Q 048785          212 AWQKLTFSKKQLVPLLVI-----------PKGENLVFLVKLLKEGKIKTLID---SKHLLSKAEDAWAKGADGHATGKII  277 (280)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~g~~~~~~~---~~~~~~~~~~a~~~~~~~~~~gkvv  277 (280)
                      ....+..++..+.+....           ...+.++++++++.+|.+++...   ..++++++++|++.+.++...+|++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv  334 (336)
T cd08252         255 DLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINAENLREAHALLESGKTIGKIV  334 (336)
T ss_pred             cchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCHHHHHHHHHHHHcCCccceEE
Confidence            112222334444332211           11356788999999999987543   3579999999999999998889998


Q ss_pred             Ee
Q 048785          278 LE  279 (280)
Q Consensus       278 i~  279 (280)
                      ++
T Consensus       335 ~~  336 (336)
T cd08252         335 LE  336 (336)
T ss_pred             eC
Confidence            74

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.98  E-value=2.6e-31  Score=224.67  Aligned_cols=262  Identities=29%  Similarity=0.396  Sum_probs=204.2

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      ++.+.|+++++||+||+.++++|++|+....+...    ..+|.++|||++|+|+++|++++.+++||+|++..      
T Consensus        17 ~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~~----~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~   92 (325)
T cd08264          17 EDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKV----KPMPHIPGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGT   92 (325)
T ss_pred             EeccCCCCCCCeEEEEEEEEEechHHHHHHhCCCC----CCCCeecccceeEEEEEECCCCCCCCCCCEEEECCCcCCCC
Confidence            35667778999999999999999999988764221    23567899999999999999999999999998751      


Q ss_pred             ------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh------------
Q 048785           76 ------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG------------  125 (280)
Q Consensus        76 ------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~------------  125 (280)
                                        +....|+|++|+.++.+.++++|+++++++++.+++++.+||+++.. ++            
T Consensus        93 c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~-~~~~~g~~vlI~g~  171 (325)
T cd08264          93 CDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKT-AGLGPGETVVVFGA  171 (325)
T ss_pred             ChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECC
Confidence                              11136899999999999999999999999999999999999999854 32            


Q ss_pred             ----------hhhhCCCEEEEEecCCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccCC
Q 048785          126 ----------LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAEN  195 (280)
Q Consensus       126 ----------la~~~G~~Vi~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~  195 (280)
                                +|+.+|++|+++++   .+.++++|+++++++++........+  +++|+++||+|+..+..++++++++
T Consensus       172 ~g~vg~~~~~~a~~~G~~v~~~~~---~~~~~~~g~~~~~~~~~~~~~l~~~~--~~~d~vl~~~g~~~~~~~~~~l~~~  246 (325)
T cd08264         172 SGNTGIFAVQLAKMMGAEVIAVSR---KDWLKEFGADEVVDYDEVEEKVKEIT--KMADVVINSLGSSFWDLSLSVLGRG  246 (325)
T ss_pred             CchHHHHHHHHHHHcCCeEEEEeH---HHHHHHhCCCeeecchHHHHHHHHHh--CCCCEEEECCCHHHHHHHHHhhccC
Confidence                      88899999988874   36677899988887654211122222  5799999999988788999999999


Q ss_pred             cEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCc
Q 048785          196 GKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGK  275 (280)
Q Consensus       196 g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gk  275 (280)
                      |+++.+|........++...+..++.++.+.. ...++.++++++++...+  ..+.+.|+++++++|++.+.++...+|
T Consensus       247 g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~k  323 (325)
T cd08264         247 GRLVTFGTLTGGEVKLDLSDLYSKQISIIGST-GGTRKELLELVKIAKDLK--VKVWKTFKLEEAKEALKELFSKERDGR  323 (325)
T ss_pred             CEEEEEecCCCCCCccCHHHHhhcCcEEEEcc-CCCHHHHHHHHHHHHcCC--ceeEEEEcHHHHHHHHHHHHcCCCccc
Confidence            99999885322123333444444555555543 345678999999996544  446678999999999999998877777


Q ss_pred             E
Q 048785          276 I  276 (280)
Q Consensus       276 v  276 (280)
                      +
T Consensus       324 v  324 (325)
T cd08264         324 I  324 (325)
T ss_pred             c
Confidence            5

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.98  E-value=2.5e-30  Score=219.12  Aligned_cols=270  Identities=29%  Similarity=0.382  Sum_probs=209.4

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      ++.+.|.+.++||+|++.++++|+.|+.+..|..+..  ..+|.++|+|++|+|+++|++++.+++||+|++..   ..|
T Consensus        18 ~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~---~~g   92 (331)
T cd08273          18 VEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQ--PPLPFTPGYDLVGRVDALGSGVTGFEVGDRVAALT---RVG   92 (331)
T ss_pred             eccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCC--CCCCcccccceEEEEEEeCCCCccCCCCCEEEEeC---CCc
Confidence            5678888999999999999999999999888775421  24678999999999999999999999999999873   248


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEec
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCG  139 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~  139 (280)
                      +|++|+.++.+.++++|+++++.+++.++.++.+||+++....+                      +|+.+|++|+++++
T Consensus        93 ~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~  172 (331)
T cd08273          93 GNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS  172 (331)
T ss_pred             ceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence            99999999999999999999999999999999999999865432                      88899999999888


Q ss_pred             CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhh---HHHHH---
Q 048785          140 ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAM---LTFAW---  213 (280)
Q Consensus       140 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~---~~~~~---  213 (280)
                      +++.+.++++|+.. ++.+..+.... ...++++|+++||+++.....++++++++|+++.+|......   ..+..   
T Consensus       173 ~~~~~~~~~~g~~~-~~~~~~~~~~~-~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~  250 (331)
T cd08273         173 ERNHAALRELGATP-IDYRTKDWLPA-MLTPGGVDVVFDGVGGESYEESYAALAPGGTLVCYGGNSSLLQGRRSLAALGS  250 (331)
T ss_pred             HHHHHHHHHcCCeE-EcCCCcchhhh-hccCCCceEEEECCchHHHHHHHHHhcCCCEEEEEccCCCCCCccccccchhh
Confidence            66777888898754 44443331111 233457999999999988889999999999999997543211   11100   


Q ss_pred             -------hhhhccceeeEEEEEc--------CCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEE
Q 048785          214 -------QKLTFSKKQLVPLLVI--------PKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       214 -------~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                             ................        ...+.+..+++++++|.+++.+.+++++++++++++.+.++...||+|+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~  330 (331)
T cd08273         251 LLARLAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIRPKIAKRLPLSEVAEAHRLLESGKVVGKIVL  330 (331)
T ss_pred             hhhhhhhhcceeccceeEEEeechhcccCHHHHHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence                   0011111122221111        1246788899999999998888889999999999999998888889886

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08251 polyketide_synthase polyketide synthase

Probab=99.98  E-value=5.9e-31  Score=220.03  Aligned_cols=270  Identities=26%  Similarity=0.395  Sum_probs=211.7

Q ss_pred             CCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCCcce
Q 048785            5 PVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLA   84 (280)
Q Consensus         5 ~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~   84 (280)
                      +.|.+.+++++|++.++++|+.|+..+.|..+.  ...+|.++|+|++|+|+++|++++++++||+|+++.+ ...|+|+
T Consensus         1 ~~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-~~~g~~~   77 (303)
T cd08251           1 EVAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPT--MPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG-ESMGGHA   77 (303)
T ss_pred             CCCCCCCCEEEEEEEEeecChHHHHHHCCCCCC--CCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecC-CCCccee
Confidence            356788999999999999999999988877542  1256789999999999999999999999999998631 2358999


Q ss_pred             eEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEecC-C
Q 048785           85 EFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCGA-R  141 (280)
Q Consensus        85 ~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~~-~  141 (280)
                      +|+.++.+.++++|++++++++++++..+++||+++. ..+                      +++.+|++|++++++ +
T Consensus        78 ~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~-~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~  156 (303)
T cd08251          78 TLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAFA-RAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDD  156 (303)
T ss_pred             eEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHH-hcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence            9999999999999999999999999999999999984 332                      888999999999864 7


Q ss_pred             cHHHHHhcCCCeeecCCCCC-c-ccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCch---h--hHHHHHh
Q 048785          142 NIEFVKSLGADEVLDYKTPD-G-AALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPS---A--MLTFAWQ  214 (280)
Q Consensus       142 ~~~~~~~~g~~~v~~~~~~~-~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~---~--~~~~~~~  214 (280)
                      +.+.++++|.+.+++..... . .....+.++++|+++||+++..+..++++++++|+++.++....   .  .......
T Consensus       157 ~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~  236 (303)
T cd08251         157 KLEYLKQLGVPHVINYVEEDFEEEIMRLTGGRGVDVVINTLSGEAIQKGLNCLAPGGRYVEIAMTALKSAPSVDLSVLSN  236 (303)
T ss_pred             HHHHHHHcCCCEEEeCCCccHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHhccCcEEEEEeccCCCccCccChhHhhc
Confidence            78888899999998876654 2 23334566789999999988778889999999999998864321   1  1111122


Q ss_pred             hhhccceeeEEEEEc---CCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEE
Q 048785          215 KLTFSKKQLVPLLVI---PKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       215 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                      +..++...+......   ...+.+.++++++.+|.+++...+.|++++++++++.+.++...+|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  303 (303)
T cd08251         237 NQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELRPTVSRIFPFDDIGEAYRYLSDRENIGKVVV  303 (303)
T ss_pred             CceEEEEehHHhhhhCHHHHHHHHHHHHHHHHCCCccCCCceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence            223333332222111   1235577888999999998877889999999999999998888888874

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.98  E-value=2.3e-30  Score=219.33  Aligned_cols=269  Identities=25%  Similarity=0.326  Sum_probs=212.6

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-----   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----   75 (280)
                      +++.|.|.+.++|++|++.++++|++|+....|....   ..+|.++|||++|+|+++|++++.+++||+|+...     
T Consensus        14 ~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~---~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~~~~~   90 (330)
T cd08245          14 PEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGG---SKYPLVPGHEIVGEVVEVGAGVEGRKVGDRVGVGWLVGSC   90 (330)
T ss_pred             EEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCC---CCCCcccCccceEEEEEECCCCcccccCCEEEEccccCCC
Confidence            3577888899999999999999999999988876531   24678999999999999999999999999998421     


Q ss_pred             --------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------
Q 048785           76 --------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------  125 (280)
Q Consensus        76 --------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------  125 (280)
                                          +....|+|++|+.++.+.++++|+++++.+++.+++.+.+||.++.. .+          
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~  169 (330)
T cd08245          91 GRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRD-AGPRPGERVAVL  169 (330)
T ss_pred             CCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEE
Confidence                                11136899999999999999999999999999999999999999854 32          


Q ss_pred             -----------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCC-CCcccccccc
Q 048785          126 -----------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARG-IPWSTFEPNL  192 (280)
Q Consensus       126 -----------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l  192 (280)
                                 +|+.+|++|++++++ ++.+.++++|++.+++.+.......   ..+++|++|||+++ .....+++++
T Consensus       170 g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~d~vi~~~~~~~~~~~~~~~l  246 (330)
T cd08245         170 GIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQA---AAGGADVILVTVVSGAAAEAALGGL  246 (330)
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHh---ccCCCCEEEECCCcHHHHHHHHHhc
Confidence                       788899999998864 7788888899988887654331111   22469999999875 4578889999


Q ss_pred             cCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCC
Q 048785          193 AENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHA  272 (280)
Q Consensus       193 ~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~  272 (280)
                      +++|+++.++........+....+..++.++.+... ...+.++.+++++.++.+.+ ..+.+++++++++|+.+.++..
T Consensus       247 ~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~l~~-~~~~~~~~~~~~a~~~~~~~~~  324 (330)
T cd08245         247 RRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTH-GGRADLQEALDFAAEGKVKP-MIETFPLDQANEAYERMEKGDV  324 (330)
T ss_pred             ccCCEEEEECCCCCCccccchHHHHhCCCEEEEecc-CCHHHHHHHHHHHHcCCCcc-eEEEEcHHHHHHHHHHHHcCCC
Confidence            999999998754322222212234445556655543 35678889999999999876 4468999999999999999988


Q ss_pred             cCcEEE
Q 048785          273 TGKIIL  278 (280)
Q Consensus       273 ~gkvvi  278 (280)
                      .+|+++
T Consensus       325 ~~~~v~  330 (330)
T cd08245         325 RFRFVL  330 (330)
T ss_pred             CcceeC
Confidence            888875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.98  E-value=1.8e-30  Score=219.00  Aligned_cols=276  Identities=29%  Similarity=0.401  Sum_probs=215.2

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC--CC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH--FS   79 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~--~~   79 (280)
                      +++|.|.+.+++|+|++.++++|++|+....|..+.  ...+|.++|||++|+|+++|++++.+++||+|++....  ..
T Consensus        18 ~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~v~~~~~~~~~~   95 (325)
T cd08253          18 GDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPG--LPPLPYVPGSDGAGVVEAVGEGVDGLKVGDRVWLTNLGWGRR   95 (325)
T ss_pred             eecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCC--CCCCCeecccceEEEEEeeCCCCCCCCCCCEEEEeccccCCC
Confidence            467778889999999999999999999988776532  12467899999999999999999999999999986311  12


Q ss_pred             CCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEE
Q 048785           80 GGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTAT  137 (280)
Q Consensus        80 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~  137 (280)
                      .|++++|+.++.+.++++|+++++.+++++++++.+||+++....+                      +++.+|++|+++
T Consensus        96 ~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~  175 (325)
T cd08253          96 QGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIAT  175 (325)
T ss_pred             CcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEE
Confidence            6899999999999999999999999999999999999999865332                      777889999999


Q ss_pred             ecC-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHh
Q 048785          138 CGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQ  214 (280)
Q Consensus       138 ~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~  214 (280)
                      +++ ++.+.+.++|++.+++.....  ......+.++++|+++||+++......+++++++|+++.++.... .......
T Consensus       176 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~~~~~~-~~~~~~~  254 (325)
T cd08253         176 ASSAEGAELVRQAGADAVFNYRAEDLADRILAATAGQGVDVIIEVLANVNLAKDLDVLAPGGRIVVYGSGGL-RGTIPIN  254 (325)
T ss_pred             eCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHHcCCCceEEEEECCchHHHHHHHHhhCCCCEEEEEeecCC-cCCCChh
Confidence            864 778888889998888776554  222333455689999999999888888899999999998875331 1111112


Q ss_pred             hhhccceeeEEEEEc-C----CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          215 KLTFSKKQLVPLLVI-P----KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       215 ~~~~~~~~~~~~~~~-~----~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      .+..++..+.+.... .    ..+.++.+.+++.++.+++...+.|++++++++++.+.++...+|+++++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~  325 (325)
T cd08253         255 PLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALRPVIAREYPLEEAAAAHEAVESGGAIGKVVLDP  325 (325)
T ss_pred             HHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence            222333344333211 1    23456677788889999887788999999999999999988889999864

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.97  E-value=1.6e-30  Score=219.06  Aligned_cols=272  Identities=29%  Similarity=0.411  Sum_probs=211.5

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      ++++.|.+.+++|+||+.++++|+.|+....|..+.  ...+|.++|||++|+|+++|++++.+++||+|+++.   .+|
T Consensus        18 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~---~~g   92 (323)
T cd05276          18 GEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPP--PPGASDILGLEVAGVVVAVGPGVTGWKVGDRVCALL---AGG   92 (323)
T ss_pred             EecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCC--CCCCCCcccceeEEEEEeeCCCCCCCCCCCEEEEec---CCC
Confidence            355666788999999999999999999887775531  224678999999999999999999999999999874   358


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEec
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCG  139 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~  139 (280)
                      +|++|+.++.+.++++|+++++.++++++..+.++|+++.....                      +++..|++|+.+++
T Consensus        93 ~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~  172 (323)
T cd05276          93 GYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAG  172 (323)
T ss_pred             ceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcC
Confidence            99999999999999999999999999999999999999865432                      78889999998886


Q ss_pred             C-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhh
Q 048785          140 A-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKL  216 (280)
Q Consensus       140 ~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  216 (280)
                      + ++.+.++++|.+.+++.....  ........++++|++|||+|+..+..++++++++|+++.++........+....+
T Consensus       173 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~  252 (323)
T cd05276         173 SEEKLEACRALGADVAINYRTEDFAEEVKEATGGRGVDVILDMVGGDYLARNLRALAPDGRLVLIGLLGGAKAELDLAPL  252 (323)
T ss_pred             CHHHHHHHHHcCCCEEEeCCchhHHHHHHHHhCCCCeEEEEECCchHHHHHHHHhhccCCEEEEEecCCCCCCCCchHHH
Confidence            5 677888889988888766544  2222334456899999999988888889999999999988743221111112222


Q ss_pred             hccceeeEEEEEcC---------CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEE
Q 048785          217 TFSKKQLVPLLVIP---------KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       217 ~~~~~~~~~~~~~~---------~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                      ..++..+.+.....         ..+.+.++++++.++++.+...+.|++++++++++.+.++...+|+++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~  323 (323)
T cd05276         253 LRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIRPVIDKVFPLEEAAEAHRRMESNEHIGKIVL  323 (323)
T ss_pred             HHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence            23444444443211         123467788899999998777889999999999999998887888774

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.97  E-value=1.8e-30  Score=220.39  Aligned_cols=268  Identities=26%  Similarity=0.318  Sum_probs=208.4

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec-----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN-----   76 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-----   76 (280)
                      ++.|.|++.++||+||+.++++|+.|+....|..+.    .+|.++|+|++|+|+++|++++.+++||+|++...     
T Consensus        15 ~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~----~~p~~~g~~~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~   90 (334)
T cd08234          15 EEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA----APPLVPGHEFAGVVVAVGSKVTGFKVGDRVAVDPNIYCGE   90 (334)
T ss_pred             EeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC----CCCcccccceEEEEEEeCCCCCCCCCCCEEEEcCCcCCCC
Confidence            467889999999999999999999999988887642    36789999999999999999999999999987210     


Q ss_pred             -------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh------------
Q 048785           77 -------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG------------  125 (280)
Q Consensus        77 -------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~------------  125 (280)
                                         ....|+|++|+.++.+.++++|+++++.+++.+ ..+.++++++ ..++            
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~  168 (334)
T cd08234          91 CFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGA  168 (334)
T ss_pred             CccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECC
Confidence                               113689999999999999999999999998766 6677888887 4322            


Q ss_pred             ---------hhhhCCCE-EEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCC-CCccccccccc
Q 048785          126 ---------LAKLGNSH-VTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARG-IPWSTFEPNLA  193 (280)
Q Consensus       126 ---------la~~~G~~-Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~  193 (280)
                               +|+..|++ |+++++ +++.+.++++|++.+++++.........+.++++|++|||++. ..+..++++++
T Consensus       169 g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~~~~~~~~~l~  248 (334)
T cd08234         169 GPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPKTLEQAIEYAR  248 (334)
T ss_pred             CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChHHHHHHHHHHh
Confidence                     88899996 777775 4778888889988888876654211134456789999999985 44778899999


Q ss_pred             CCcEEEEeCCCch-hhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeE--eccceecchhHHHHHHHHhcC
Q 048785          194 ENGKVIDLTPTPS-AMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT--LIDSKHLLSKAEDAWAKGADG  270 (280)
Q Consensus       194 ~~g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~--~~~~~~~~~~~~~a~~~~~~~  270 (280)
                      ++|+++.+|.... ....+....+..++..+.+..  ...+.+++++++++++++.+  .+...+++++++++++.+.+ 
T Consensus       249 ~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-  325 (334)
T cd08234         249 RGGTVLVFGVYAPDARVSISPFEIFQKELTIIGSF--INPYTFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGMRS-  325 (334)
T ss_pred             cCCEEEEEecCCCCCCcccCHHHHHhCCcEEEEec--cCHHHHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHHhc-
Confidence            9999999875432 112222222223455555543  24667899999999999864  35678999999999999998 


Q ss_pred             CCcCcEEE
Q 048785          271 HATGKIIL  278 (280)
Q Consensus       271 ~~~gkvvi  278 (280)
                      ...+|+++
T Consensus       326 ~~~~k~vi  333 (334)
T cd08234         326 GGALKVVV  333 (334)
T ss_pred             CCceEEEe
Confidence            77889886

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=5.3e-30  Score=216.40  Aligned_cols=273  Identities=32%  Similarity=0.481  Sum_probs=213.2

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC--CC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH--FS   79 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~--~~   79 (280)
                      ++.+.|.+.+++|+|++.++++|++|+....|....  ....|.++|||++|+|+++|++++.+++||+|+++...  ..
T Consensus        18 ~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~   95 (326)
T cd08272          18 REVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAA--RPPLPAILGCDVAGVVEAVGEGVTRFRVGDEVYGCAGGLGGL   95 (326)
T ss_pred             eecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCC--CCCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCCcCCC
Confidence            456677788999999999999999999987776431  12347789999999999999999999999999986311  12


Q ss_pred             CCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEE
Q 048785           80 GGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTAT  137 (280)
Q Consensus        80 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~  137 (280)
                      .|++++|+.++.+.++++|+++++.+++.++..+.+||+++.+..+                      +++.+|++|+++
T Consensus        96 ~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~  175 (326)
T cd08272          96 QGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYAT  175 (326)
T ss_pred             CCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEE
Confidence            6889999999999999999999999999999999999998755332                      888999999988


Q ss_pred             ecCCcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhh
Q 048785          138 CGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKL  216 (280)
Q Consensus       138 ~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  216 (280)
                      +++++.+.++++|.+.+++..... ......+.++++|+++||+++..+..++++++++|+++.++........    ..
T Consensus       176 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~----~~  251 (326)
T cd08272         176 ASSEKAAFARSLGADPIIYYRETVVEYVAEHTGGRGFDVVFDTVGGETLDASFEAVALYGRVVSILGGATHDLA----PL  251 (326)
T ss_pred             echHHHHHHHHcCCCEEEecchhHHHHHHHhcCCCCCcEEEECCChHHHHHHHHHhccCCEEEEEecCCccchh----hH
Confidence            865777888889998888764432 1233345567899999999998788899999999999988754311111    11


Q ss_pred             hccceeeEEEEEc----------CCHHHHHHHHHHHHCCCeeEecc-ceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          217 TFSKKQLVPLLVI----------PKGENLVFLVKLLKEGKIKTLID-SKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       217 ~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~g~~~~~~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ..++..+.+....          ...+.+..+++++.++.+++.++ +.|++++++++++.+.++...+|+++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~  326 (326)
T cd08272         252 SFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLRPLLDPRTFPLEEAAAAHARLESGSARGKIVIDV  326 (326)
T ss_pred             hhhcceEEEEEcccccccccchhhHHHHHHHHHHHHHCCCcccccccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence            1334443333211          12467888999999999987765 8999999999999999888888999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.97  E-value=1.6e-30  Score=220.22  Aligned_cols=269  Identities=25%  Similarity=0.275  Sum_probs=204.5

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCC
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSG   80 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   80 (280)
                      ++++|.|++.++||+||+.++++|+.|.....+......+...+.++|+|++|+|+++|++  .+++||+|+++      
T Consensus        22 ~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~--~~~~Gd~V~~~------   93 (329)
T cd05288          22 LVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP--DFKVGDLVSGF------   93 (329)
T ss_pred             EEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC--CCCCCCEEecc------
Confidence            3577888899999999999999999887655543211111123467899999999999964  79999999875      


Q ss_pred             CcceeEEeecc-cccccCCCCCC--hhhhcc-cchhHHHHHHHHHhhhh----------------------hhhhCCCEE
Q 048785           81 GGLAEFAMVKE-SLTASRPLEVS--AAEGAG-LPLAGLTALEALTQSAG----------------------LAKLGNSHV  134 (280)
Q Consensus        81 g~~~~~~~v~~-~~~~~~p~~~~--~~~aa~-~~~~~~~a~~~l~~~~~----------------------la~~~G~~V  134 (280)
                      ++|++|+.++. +.++++|++++  +.++++ +++++.+||+++.....                      +|+..|++|
T Consensus        94 ~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~v  173 (329)
T cd05288          94 LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARV  173 (329)
T ss_pred             cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEE
Confidence            48999999999 99999999985  445555 88889999999865432                      888999999


Q ss_pred             EEEecC-CcHHHHHh-cCCCeeecCCCCC-ccc-ccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhH-
Q 048785          135 TATCGA-RNIEFVKS-LGADEVLDYKTPD-GAA-LKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAML-  209 (280)
Q Consensus       135 i~~~~~-~~~~~~~~-~g~~~v~~~~~~~-~~~-~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~-  209 (280)
                      ++++++ ++.+.+++ +|+++++++++.. ... .... ++++|++|||+|+..+..++++++++|+++.+|....... 
T Consensus       174 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~-~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~  252 (329)
T cd05288         174 VGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAA-PDGIDVYFDNVGGEILDAALTLLNKGGRIALCGAISQYNAT  252 (329)
T ss_pred             EEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhc-cCCceEEEEcchHHHHHHHHHhcCCCceEEEEeeccCcccc
Confidence            999865 77888877 9999999887654 222 2233 4689999999999888899999999999999874432211 


Q ss_pred             ----HHHHhhhhccceeeEEEEEcCC----HHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEE
Q 048785          210 ----TFAWQKLTFSKKQLVPLLVIPK----GENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       210 ----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                          .++......++.++.+......    .+.+.++++++.+|.+++....++++++++++++.+.+++..+|+++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv  329 (329)
T cd05288         253 EPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYREDVVEGLENAPEAFLGLFTGKNTGKLVV  329 (329)
T ss_pred             cccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccccccccHHHHHHHHHHHhcCCCccceeC
Confidence                0112233445666655443222    35678889999999998766677999999999999998888888874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.97  E-value=6.8e-30  Score=215.88  Aligned_cols=274  Identities=21%  Similarity=0.254  Sum_probs=209.4

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee---cC
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL---NH   77 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~---~~   77 (280)
                      ++++|.|+++++||+|++.++++|++|.....|....  ...+|.++|||++|+|++  ++++.+++||+|++..   +.
T Consensus        17 ~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~V~~--~~~~~~~~Gd~V~~~~~~~~~   92 (324)
T cd08288          17 LRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGI--VRTFPLVPGIDLAGTVVE--SSSPRFKPGDRVVLTGWGVGE   92 (324)
T ss_pred             EEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccc--cCCCCCccccceEEEEEe--CCCCCCCCCCEEEECCccCCC
Confidence            3578899999999999999999999999988776421  123567899999999998  7778899999999852   11


Q ss_pred             CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhh-------hh------------------hhhhCCC
Q 048785           78 FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS-------AG------------------LAKLGNS  132 (280)
Q Consensus        78 ~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~-------~~------------------la~~~G~  132 (280)
                      ...|+|++|+.++.+.++++|+++++++++++++.+++|+.++...       .+                  +|+.+|+
T Consensus        93 ~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~  172 (324)
T cd08288          93 RHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY  172 (324)
T ss_pred             CCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence            2368999999999999999999999999999999999998776411       11                  8899999


Q ss_pred             EEEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHH
Q 048785          133 HVTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTF  211 (280)
Q Consensus       133 ~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~  211 (280)
                      +|+++++ +++.+.++++|+++++++++.... +......++|.+||++++..+..++..++.+|+++.+|.........
T Consensus       173 ~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~G~~~~~~~~~  251 (324)
T cd08288         173 EVVASTGRPEEADYLRSLGASEIIDRAELSEP-GRPLQKERWAGAVDTVGGHTLANVLAQTRYGGAVAACGLAGGADLPT  251 (324)
T ss_pred             eEEEEeCCHHHHHHHHhcCCCEEEEcchhhHh-hhhhccCcccEEEECCcHHHHHHHHHHhcCCCEEEEEEecCCCCCCc
Confidence            9998885 588899999999999987654332 22223335899999999866777788889999999887432111112


Q ss_pred             HHhhhhccceeeEEEEEc-----CCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          212 AWQKLTFSKKQLVPLLVI-----PKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ....+..++.++.+....     ...+.+..+.+++.++.+++ +.+.++++++++|++.+.+++..+|+++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~a~~~~~~~~~~~~vvv~~  324 (324)
T cd08288         252 TVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDPALLEA-LTREIPLADVPDAAEAILAGQVRGRVVVDV  324 (324)
T ss_pred             chhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhcCCccc-cceeecHHHHHHHHHHHhcCCccCeEEEeC
Confidence            222232455555554221     12346777788888998876 467999999999999999999999999864

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.97  E-value=2.1e-29  Score=212.66  Aligned_cols=273  Identities=28%  Similarity=0.396  Sum_probs=212.0

Q ss_pred             CCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCCc
Q 048785            3 HVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGG   82 (280)
Q Consensus         3 ~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~   82 (280)
                      +.+.|.+++++++|++.++++|+.|+....|..+.  +..+|.++|||++|+|+.+|+++..+++||+|++..   .+|+
T Consensus        19 ~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~---~~~~   93 (325)
T TIGR02824        19 EVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPP--PPGASDILGLEVAGEVVAVGEGVSRWKVGDRVCALV---AGGG   93 (325)
T ss_pred             eCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC--CCCCCCCccceeEEEEEEeCCCCCCCCCCCEEEEcc---CCCc
Confidence            44555688999999999999999999887775532  124578999999999999999999999999999863   3589


Q ss_pred             ceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEecC
Q 048785           83 LAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCGA  140 (280)
Q Consensus        83 ~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~~  140 (280)
                      +++++.++.+.++++|+++++.++++++.++.+||+++.....                      +++.+|++|++++++
T Consensus        94 ~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~  173 (325)
T TIGR02824        94 YAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGS  173 (325)
T ss_pred             ceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence            9999999999999999999999999999999999998754332                      888999999988864


Q ss_pred             -CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhhh
Q 048785          141 -RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLT  217 (280)
Q Consensus       141 -~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~  217 (280)
                       ++.+.++++|.+.+++.....  ........++++|++++|+|+..+..++++++++|+++.++........+....+.
T Consensus       174 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~  253 (325)
T TIGR02824       174 DEKCAACEALGADIAINYREEDFVEVVKAETGGKGVDVILDIVGGSYLNRNIKALALDGRIVQIGFQGGRKAELDLGPLL  253 (325)
T ss_pred             HHHHHHHHHcCCcEEEecCchhHHHHHHHHcCCCCeEEEEECCchHHHHHHHHhhccCcEEEEEecCCCCcCCCChHHHH
Confidence             677778889988777765433  22223344567999999999877888999999999999987433111122222222


Q ss_pred             ccceeeEEEEEcC---------CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          218 FSKKQLVPLLVIP---------KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       218 ~~~~~~~~~~~~~---------~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      .++..+.+.....         ..+.+.+++++++++.+.+..++.+++++++++++.+.++...+|+++.+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  325 (325)
T TIGR02824       254 AKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVRPVIDKVFPLEDAAQAHALMESGDHIGKIVLTV  325 (325)
T ss_pred             hcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCcccCccccEEeHHHHHHHHHHHHhCCCcceEEEeC
Confidence            4555555544211         12345667889999999877888999999999999999888888999864

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=3.2e-29  Score=211.74  Aligned_cols=277  Identities=25%  Similarity=0.326  Sum_probs=212.0

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec--CCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN--HFS   79 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~--~~~   79 (280)
                      ++.+.|.+++++++|++.++++|+.|+....|.....  ..+|.++|||++|+|+.+|++++++++||+|+++..  ...
T Consensus        18 ~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~--~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~   95 (328)
T cd08268          18 EELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEP--PPLPARLGYEAAGVVEAVGAGVTGFAVGDRVSVIPAADLGQ   95 (328)
T ss_pred             eecCCCCCCCCeEEEEEEEEecChHHhheeccccCCC--CCCCCCCCcceEEEEEeeCCCCCcCCCCCEEEeccccccCC
Confidence            3566677899999999999999999998877765421  244778999999999999999999999999998632  123


Q ss_pred             CCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEE
Q 048785           80 GGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTAT  137 (280)
Q Consensus        80 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~  137 (280)
                      .|++++|+.++.+.++++|+++++++++.+++.+.+||+++.....                      +++..|++++.+
T Consensus        96 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~  175 (328)
T cd08268          96 YGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIAT  175 (328)
T ss_pred             CccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEE
Confidence            5899999999999999999999999999999999999999865432                      778889999998


Q ss_pred             ecC-CcHHHHHhcCCCeeecCCCCC-c-ccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHh
Q 048785          138 CGA-RNIEFVKSLGADEVLDYKTPD-G-AALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQ  214 (280)
Q Consensus       138 ~~~-~~~~~~~~~g~~~v~~~~~~~-~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~  214 (280)
                      +++ ++.+.+.++|.+.+++.+... . .......++++|++++|+++.....++++++++|+++.+|........+...
T Consensus       176 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~  255 (328)
T cd08268         176 TRTSEKRDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVGGPQFAKLADALAPGGTLVVYGALSGEPTPFPLK  255 (328)
T ss_pred             cCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHhCCCCceEEEECCchHhHHHHHHhhccCCEEEEEEeCCCCCCCCchH
Confidence            854 677777888988888766544 1 2233345567999999999988888999999999999887433211111112


Q ss_pred             hhhccceeeEEEEEc-------CCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          215 KLTFSKKQLVPLLVI-------PKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       215 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ....++..+.+....       ...+.++.+.+++.++.+.+.....|+++++.++++.+.++...+|+++++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~  328 (328)
T cd08268         256 AALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLASGALKPVVDRVFPFDDIVEAHRYLESGQQIGKIVVTP  328 (328)
T ss_pred             HHhhcCCEEEEEecccccCCHHHHHHHHHHHHHHHHCCCCcCCcccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            123344444443321       112345566677888888877778899999999999999888888999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.9e-29  Score=211.26  Aligned_cols=239  Identities=25%  Similarity=0.356  Sum_probs=191.0

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN----   76 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~----   76 (280)
                      +++++.|++.++||+|++.++++|++|+....|...   +...|.++|+|++|+|+++|++++.+++||+|++...    
T Consensus        16 ~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   92 (306)
T cd08258          16 LREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYD---PVETPVVLGHEFSGTIVEVGPDVEGWKVGDRVVSETTFSTC   92 (306)
T ss_pred             EeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCC---cCCCCeeeccceEEEEEEECCCcCcCCCCCEEEEccCcCCC
Confidence            357888999999999999999999999998877652   1245689999999999999999999999999988531    


Q ss_pred             ---------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------
Q 048785           77 ---------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------  125 (280)
Q Consensus        77 ---------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------  125 (280)
                                           ....|+|++|+.++.+.++++|+++++++++ ++..+++||+++....+          
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~  171 (306)
T cd08258          93 GRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVF  171 (306)
T ss_pred             CCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEE
Confidence                                 1135899999999999999999999999887 66677799999866533          


Q ss_pred             -----------hhhhCCCEEEEEec--C-CcHHHHHhcCCCeeecCCCCC-c-ccccCCCCCcccEEEECCCC-CCcccc
Q 048785          126 -----------LAKLGNSHVTATCG--A-RNIEFVKSLGADEVLDYKTPD-G-AALKSPSGRKYDAVIHCARG-IPWSTF  188 (280)
Q Consensus       126 -----------la~~~G~~Vi~~~~--~-~~~~~~~~~g~~~v~~~~~~~-~-~~~~~~~~~~~d~v~d~~g~-~~~~~~  188 (280)
                                 +|+.+|++|+.+++  + ++.++++++|++++ +++..+ . .......++++|++|||+|+ ..+...
T Consensus       172 g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~  250 (306)
T cd08258         172 GPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADAV-NGGEEDLAELVNEITDGDGADVVIECSGAVPALEQA  250 (306)
T ss_pred             CCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhCCccc-CCCcCCHHHHHHHHcCCCCCCEEEECCCChHHHHHH
Confidence                       88999999888742  3 46778888999878 766554 2 23334556789999999975 457788


Q ss_pred             cccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCC
Q 048785          189 EPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEG  245 (280)
Q Consensus       189 ~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g  245 (280)
                      +++++++|+++.+|........+....+.+++.++.+... .+.++++++++++++|
T Consensus       251 ~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~  306 (306)
T cd08258         251 LELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSRS-STPASWETALRLLASG  306 (306)
T ss_pred             HHHhhcCCEEEEEcccCCCCcccCHHHHhhcCcEEEEEec-CchHhHHHHHHHHhcC
Confidence            9999999999999865433344455666678999998774 5688899999999876

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.97  E-value=5.3e-29  Score=206.80  Aligned_cols=258  Identities=28%  Similarity=0.320  Sum_probs=202.4

Q ss_pred             CeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCCcceeEEeecc
Q 048785           12 DEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKE   91 (280)
Q Consensus        12 ~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~   91 (280)
                      +||+||+.++++|++|+....|..+     .+|.++|||++|+|+++|++++.+++||+|+++    ..|+|++|+.++.
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~~-----~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~----~~g~~~~~~~~~~   71 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLLP-----GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGL----APGAFATHVRVDA   71 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCCC-----CCCCccceeeeEEEEeecCCccCCCCCCEEEEE----ecCcccceEEech
Confidence            5899999999999999998877652     457899999999999999999999999999987    3689999999999


Q ss_pred             cccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEecC-CcHHHHHh
Q 048785           92 SLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCGA-RNIEFVKS  148 (280)
Q Consensus        92 ~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~~-~~~~~~~~  148 (280)
                      +.++++|+++++.+++.+++++.+||.++.....                      +++.+|++|++++++ ++.+.+++
T Consensus        72 ~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~  151 (293)
T cd05195          72 RLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRE  151 (293)
T ss_pred             hheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            9999999999999999999999999999855332                      788999999999865 77888888


Q ss_pred             cC--CCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchh---hH--HHHHhhhhcc
Q 048785          149 LG--ADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSA---ML--TFAWQKLTFS  219 (280)
Q Consensus       149 ~g--~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~---~~--~~~~~~~~~~  219 (280)
                      .|  ++.+++++...  ......+.++++|.++||+|+..+..++++++++|+++.++.....   ..  ....+...++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~  231 (293)
T cd05195         152 LGGPVDHIFSSRDLSFADGILRATGGRGVDVVLNSLSGELLRASWRCLAPFGRFVEIGKRDILSNSKLGMRPFLRNVSFS  231 (293)
T ss_pred             hCCCcceEeecCchhHHHHHHHHhCCCCceEEEeCCCchHHHHHHHhcccCceEEEeeccccccCCccchhhhccCCeEE
Confidence            87  67788765543  2233345567899999999998889999999999999988744321   11  1111112222


Q ss_pred             ceeeEEEEE---cCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEE
Q 048785          220 KKQLVPLLV---IPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       220 ~~~~~~~~~---~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                      ...+.....   ....+.+..++++++++++++..+..+++++++++++.+.++...+|+++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ivv  293 (293)
T cd05195         232 SVDLDQLARERPELLRELLREVLELLEAGVLKPLPPTVVPSASEIDAFRLMQSGKHIGKVVL  293 (293)
T ss_pred             EEeHHHHhhhChHHHHHHHHHHHHHHHCCCcccCCCeeechhhHHHHHHHHhcCCCCceecC
Confidence            222211110   01234678889999999999888889999999999999998888788764

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=1.9e-28  Score=208.03  Aligned_cols=273  Identities=29%  Similarity=0.346  Sum_probs=206.6

Q ss_pred             CCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCCc
Q 048785            3 HVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGG   82 (280)
Q Consensus         3 ~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~   82 (280)
                      +.+.|.++++||+|++.++++|+.|+....|....  ....|.++|||++|+|+.+|+++.++++||+|+++.   ..|+
T Consensus        18 ~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~---~~~~   92 (337)
T cd08275          18 KEALPEPSSGEVRVRVEACGLNFADLMARQGLYDS--APKPPFVPGFECAGTVEAVGEGVKDFKVGDRVMGLT---RFGG   92 (337)
T ss_pred             ecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC--CCCCCCCCcceeEEEEEEECCCCcCCCCCCEEEEec---CCCe
Confidence            55667788999999999999999999988776532  124467899999999999999999999999999874   3589


Q ss_pred             ceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhC-CCEEEEEec
Q 048785           83 LAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLG-NSHVTATCG  139 (280)
Q Consensus        83 ~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~-G~~Vi~~~~  139 (280)
                      |++|+.++.+.++++|+++++.+++.+++.+.+||+++....+                      +|+.+ +..++...+
T Consensus        93 ~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~~~~~~~~~~~  172 (337)
T cd08275          93 YAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNVTVVGTAS  172 (337)
T ss_pred             eeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHccCcEEEEeCC
Confidence            9999999999999999999999999999999999999865432                      55665 323322222


Q ss_pred             CCcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchh---hH------
Q 048785          140 ARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSA---ML------  209 (280)
Q Consensus       140 ~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~---~~------  209 (280)
                      +++.+.++++|++.+++.+... ...+....++++|+++||+|+.....++++++++|+++.+|.....   ..      
T Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~  252 (337)
T cd08275         173 ASKHEALKENGVTHVIDYRTQDYVEEVKKISPEGVDIVLDALGGEDTRKSYDLLKPMGRLVVYGAANLVTGEKRSWFKLA  252 (337)
T ss_pred             HHHHHHHHHcCCcEEeeCCCCcHHHHHHHHhCCCceEEEECCcHHHHHHHHHhhccCcEEEEEeecCCcCcccccccccc
Confidence            3477888889998888876554 2222222246799999999998888899999999999998743311   11      


Q ss_pred             -------HHHHhhhhccceeeEEEEEc----C---CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCc
Q 048785          210 -------TFAWQKLTFSKKQLVPLLVI----P---KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGK  275 (280)
Q Consensus       210 -------~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gk  275 (280)
                             .+.......++..+.+....    .   ....+.++++++.++.+++.....|++++++++++.+.++...+|
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  332 (337)
T cd08275         253 KKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIKPKIDSVFPFEEVGEAMRRLQSRKNIGK  332 (337)
T ss_pred             cccccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCCCCceeeEEcHHHHHHHHHHHHcCCCcce
Confidence                   01112223444444444321    0   123567888999999998777789999999999999998888899


Q ss_pred             EEEeC
Q 048785          276 IILEP  280 (280)
Q Consensus       276 vvi~~  280 (280)
                      +++++
T Consensus       333 vv~~~  337 (337)
T cd08275         333 VVLTP  337 (337)
T ss_pred             EEEeC
Confidence            99875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.96  E-value=5.2e-28  Score=203.82  Aligned_cols=271  Identities=31%  Similarity=0.423  Sum_probs=210.2

Q ss_pred             CCCCCCCC-CCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            3 HVPVPTPR-KDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         3 ~~~~~~~~-~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +.+ |.+. +++++|++.++++|+.|+....|....  ....|.++|+|++|+|+.+|++++.+++||+|+++.   ..|
T Consensus        19 ~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~---~~~   92 (323)
T cd08241          19 EVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQV--KPPLPFVPGSEVAGVVEAVGEGVTGFKVGDRVVALT---GQG   92 (323)
T ss_pred             cCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCC--CCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEec---CCc
Confidence            445 5555 599999999999999999987776531  113466899999999999999999999999999873   268


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEec
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCG  139 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~  139 (280)
                      ++++++.++.+.++++|+++++.++++++..+.+||+++.....                      +++..|++|+.+++
T Consensus        93 ~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~  172 (323)
T cd08241          93 GFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAAS  172 (323)
T ss_pred             eeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeC
Confidence            99999999999999999999999998898899999998864322                      78889999999986


Q ss_pred             C-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhh
Q 048785          140 A-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKL  216 (280)
Q Consensus       140 ~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  216 (280)
                      + ++.+.++++|.+.+++.....  ......+.++++|+++||+|+..+..++++++++|+++.++........+.....
T Consensus       173 ~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~  252 (323)
T cd08241         173 SEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVGGDVFEASLRSLAWGGRLLVIGFASGEIPQIPANLL  252 (323)
T ss_pred             CHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEECccHHHHHHHHHhhccCCEEEEEccCCCCcCcCCHHHH
Confidence            4 778888889988888766544  2233345566899999999987788899999999999988743321110111122


Q ss_pred             hccceeeEEEEEcC--------CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEe
Q 048785          217 TFSKKQLVPLLVIP--------KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILE  279 (280)
Q Consensus       217 ~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  279 (280)
                      ..++..+.+.....        ..+.+.++++++.++.+.+.....|++++++++++.+.++...+|++++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~  323 (323)
T cd08241         253 LLKNISVVGVYWGAYARREPELLRANLAELFDLLAEGKIRPHVSAVFPLEQAAEALRALADRKATGKVVLT  323 (323)
T ss_pred             hhcCcEEEEEecccccchhHHHHHHHHHHHHHHHHCCCcccccceEEcHHHHHHHHHHHHhCCCCCcEEeC
Confidence            33455555443211        2356788999999999988778899999999999999988888898864

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.96  E-value=1.4e-29  Score=209.43  Aligned_cols=214  Identities=16%  Similarity=0.165  Sum_probs=169.9

Q ss_pred             cccccceEEEEEeCCCCC------CCCCCCEEEEeec------------------------C-------CCCCcceeEEe
Q 048785           46 IPATDVAGEIIEVGSEVK------NFKAGYNVVAILN------------------------H-------FSGGGLAEFAM   88 (280)
Q Consensus        46 ~~G~e~~G~V~~vG~~v~------~~~~Gd~V~~~~~------------------------~-------~~~g~~~~~~~   88 (280)
                      ++|||++|+|+++|++|+      ++++||||+....                        .       ..+|+|+||+.
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~   80 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCH   80 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEE
Confidence            589999999999999999      8999999976310                        0       12599999999


Q ss_pred             eccc-ccccCCCCCChhhhcccchhHHHHHHHHHhhhh--------------------hhhhCCCE-EEEEec-CCcHHH
Q 048785           89 VKES-LTASRPLEVSAAEGAGLPLAGLTALEALTQSAG--------------------LAKLGNSH-VTATCG-ARNIEF  145 (280)
Q Consensus        89 v~~~-~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~--------------------la~~~G~~-Vi~~~~-~~~~~~  145 (280)
                      +|+. .++++|+++++++++.+++++.|||+++.+...                    +|+.+|++ |+++++ ++|.++
T Consensus        81 v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~  160 (280)
T TIGR03366        81 LPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRREL  160 (280)
T ss_pred             ecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence            9997 699999999999999999999999999855321                    88899995 888874 478899


Q ss_pred             HHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCC-cccccccccCCcEEEEeCCCc-hhhHHHHHhhhhccceee
Q 048785          146 VKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIP-WSTFEPNLAENGKVIDLTPTP-SAMLTFAWQKLTFSKKQL  223 (280)
Q Consensus       146 ~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g~~v~~g~~~-~~~~~~~~~~~~~~~~~~  223 (280)
                      ++++|++.++++++........+.++++|++|||+|++. ++.++++++++|+++.+|... .....++...+.++++++
T Consensus       161 a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~~~~i  240 (280)
T TIGR03366       161 ALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRRWLTI  240 (280)
T ss_pred             HHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCceeeCHHHHHhCCcEE
Confidence            999999999887553222333445678999999999764 889999999999999998543 223345566677788888


Q ss_pred             EEEEEcCCHHHHHHHHHHHHCC--Ce--eEeccceecchhH
Q 048785          224 VPLLVIPKGENLVFLVKLLKEG--KI--KTLIDSKHLLSKA  260 (280)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~i~~g--~~--~~~~~~~~~~~~~  260 (280)
                      .+.. ....++++++++++.++  ++  +++++++|+++++
T Consensus       241 ~g~~-~~~~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       241 RGVH-NYEPRHLDQAVRFLAANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             EecC-CCCHHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence            8865 34567899999999985  43  4678899999863

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>smart00829 PKS_ER Enoylreductase

Probab=99.96  E-value=8.8e-28  Score=199.16  Aligned_cols=252  Identities=24%  Similarity=0.296  Sum_probs=195.7

Q ss_pred             EEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCCcceeEEeecccccc
Q 048785           16 LKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTA   95 (280)
Q Consensus        16 V~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~   95 (280)
                      ||+.++++|++|+....|..+      .|.++|+|++|+|+++|++++.+++||+|+++    ..|+|++|+.++.+.++
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~------~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~----~~g~~~~~~~~~~~~~~   71 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP------GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGL----APGSFATYVRTDARLVV   71 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC------CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEE----cCCceeeEEEccHHHeE
Confidence            789999999999998877653      35789999999999999999999999999987    36899999999999999


Q ss_pred             cCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEec-CCcHHHHHhcCC-
Q 048785           96 SRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCG-ARNIEFVKSLGA-  151 (280)
Q Consensus        96 ~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~-~~~~~~~~~~g~-  151 (280)
                      ++|+++++.+++++++.+.++|.++.....                      +++.+|++|+++++ +++.+.++++|+ 
T Consensus        72 ~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~  151 (288)
T smart00829       72 PIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGIP  151 (288)
T ss_pred             ECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC
Confidence            999999999999999999999999844332                      78889999999995 478888889998 


Q ss_pred             -CeeecCCCCCc-c-cccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchh-hHHHHHhhhhccceeeEEEE
Q 048785          152 -DEVLDYKTPDG-A-ALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSA-MLTFAWQKLTFSKKQLVPLL  227 (280)
Q Consensus       152 -~~v~~~~~~~~-~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~  227 (280)
                       +.+++++.... . ......++++|+++|++++..+..++++++++|+++.+|..+.. ........ ..++..+....
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~  230 (288)
T smart00829      152 DDHIFSSRDLSFADEILRATGGRGVDVVLNSLAGEFLDASLRCLAPGGRFVEIGKRDIRDNSQLGMAP-FRRNVSYHAVD  230 (288)
T ss_pred             hhheeeCCCccHHHHHHHHhCCCCcEEEEeCCCHHHHHHHHHhccCCcEEEEEcCcCCccccccchhh-hcCCceEEEEE
Confidence             77787765442 2 22334556799999999987788899999999999998754311 01111111 12222322222


Q ss_pred             E-----c--CCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEE
Q 048785          228 V-----I--PKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       228 ~-----~--~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                      .     .  ...+.+..++++++++++.+...+.|++++++++++.+..+...+|+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv  288 (288)
T smart00829      231 LDALEEGPDRIRELLAEVLELFAEGVLRPLPVTVFPISDVEDAFRYMQQGKHIGKVVL  288 (288)
T ss_pred             HHHhhcChHHHHHHHHHHHHHHHCCCccCcCceEEcHHHHHHHHHHHhcCCCcceEeC
Confidence            1     1  1234577888999999988766688999999999999998877778764

Enoylreductase in Polyketide synthases.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=1.5e-26  Score=190.30  Aligned_cols=226  Identities=31%  Similarity=0.375  Sum_probs=178.3

Q ss_pred             eEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec----------------
Q 048785           13 EVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN----------------   76 (280)
Q Consensus        13 evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~----------------   76 (280)
                      ||+|++.++++|+.|+....|..+  ....+|.++|+|++|+|+++|++++.+++||+|++...                
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~--~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~   78 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYP--PPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGG   78 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCC--cCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHhhCCCC
Confidence            689999999999999999888754  12356789999999999999999999999999998642                


Q ss_pred             ----CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh---------------------hhhhCC
Q 048785           77 ----HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG---------------------LAKLGN  131 (280)
Q Consensus        77 ----~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G  131 (280)
                          ....|+|++|+.++.+.++++|+++++++++.++..+.+||+++.....                     +++..|
T Consensus        79 ~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g  158 (271)
T cd05188          79 GILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAG  158 (271)
T ss_pred             CEeccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence                1236899999999999999999999999999999999999999855432                     778889


Q ss_pred             CEEEEEecC-CcHHHHHhcCCCeeecCCCCCc-ccccCCCCCcccEEEECCCC-CCcccccccccCCcEEEEeCCCchhh
Q 048785          132 SHVTATCGA-RNIEFVKSLGADEVLDYKTPDG-AALKSPSGRKYDAVIHCARG-IPWSTFEPNLAENGKVIDLTPTPSAM  208 (280)
Q Consensus       132 ~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~-~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~g~~v~~g~~~~~~  208 (280)
                      .+|++++++ ++.+.++++|++.++++.+... .......++++|++|||+++ .....++++++++|+++.++......
T Consensus       159 ~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~  238 (271)
T cd05188         159 ARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGP  238 (271)
T ss_pred             CeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCCCCC
Confidence            999999965 7788888899888887765541 11114456789999999998 66888999999999999998554322


Q ss_pred             HHHHHhhhhccceeeEEEEEcCCHHHHHHHHHH
Q 048785          209 LTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKL  241 (280)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (280)
                      ..........++..+.+... ...+++++++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  270 (271)
T cd05188         239 PLDDLRRLLFKELTIIGSTG-GTREDFEEALDL  270 (271)
T ss_pred             CcccHHHHHhcceEEEEeec-CCHHHHHHHHhh
Confidence            22123344557777777653 356677777665

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.95  E-value=3.5e-26  Score=180.01  Aligned_cols=264  Identities=22%  Similarity=0.229  Sum_probs=203.8

Q ss_pred             CCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCcccc----ccceEEEEEeCCCCCCCCCCCEEEEeecCCCCCc
Q 048785            7 PTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPA----TDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGG   82 (280)
Q Consensus         7 ~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G----~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~   82 (280)
                      .++++++|+||..|-+.+|.....+....+..+  -.|+.+|    ..++|+|++  ++-+.+++||.|+++.      +
T Consensus        33 ~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y--~~~~~~G~pi~g~GV~kVi~--S~~~~~~~GD~v~g~~------g  102 (343)
T KOG1196|consen   33 VPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDY--APPYEPGKPIDGFGVAKVID--SGHPNYKKGDLVWGIV------G  102 (343)
T ss_pred             CCCCCccEEeEeeeecCCHHHHhhccCCCcccc--cCcccCCcEecCCceEEEEe--cCCCCCCcCceEEEec------c
Confidence            347889999999999999988776654433211  1122332    378999999  5667799999999985      7


Q ss_pred             ceeEEeeccccc--ccCCC--CCChhhhc-ccchhHHHHHHHHHhhhh----------------------hhhhCCCEEE
Q 048785           83 LAEFAMVKESLT--ASRPL--EVSAAEGA-GLPLAGLTALEALTQSAG----------------------LAKLGNSHVT  135 (280)
Q Consensus        83 ~~~~~~v~~~~~--~~~p~--~~~~~~aa-~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi  135 (280)
                      |.||.+++++..  +++|.  ++...-.. ++..+++|||.++...+.                      +|+.+|+.|+
T Consensus       103 Weeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VV  182 (343)
T KOG1196|consen  103 WEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVV  182 (343)
T ss_pred             ceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEE
Confidence            999988887544  44443  33322222 235677899999987655                      9999999999


Q ss_pred             EEec-CCcHHHHH-hcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCch-----
Q 048785          136 ATCG-ARNIEFVK-SLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPS-----  206 (280)
Q Consensus       136 ~~~~-~~~~~~~~-~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~-----  206 (280)
                      +.+. +++..+++ ++|.+..+||.++.  ..++.....+++|+.||.+|+..++..+..|+..||++.+|.-+.     
T Consensus       183 GsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVGG~~lDavl~nM~~~gri~~CG~ISqYN~~~  262 (343)
T KOG1196|consen  183 GSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENVGGKMLDAVLLNMNLHGRIAVCGMISQYNLEN  262 (343)
T ss_pred             EecCChhhhhhhHhccCCccceeccCccCHHHHHHHhCCCcceEEEeccCcHHHHHHHHhhhhccceEeeeeehhccccC
Confidence            9995 58888885 67999999999885  567777888999999999999999999999999999999984331     


Q ss_pred             hhHHHHHhhhhccceeeEEEEEcCC----HHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          207 AMLTFAWQKLTFSKKQLVPLLVIPK----GENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ...-.....+..+++++.++.....    .+.++.+..++++|+|+-.-+-.-.|++.+.||.-|.+|.+.||.++++
T Consensus       263 ~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~ikegKI~y~edi~~Glen~P~A~vglf~GkNvGKqiv~v  340 (343)
T KOG1196|consen  263 PEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYIKEGKITYVEDIADGLENGPSALVGLFHGKNVGKQLVKV  340 (343)
T ss_pred             CccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHHhcCceEEehhHHHHHhccHHHHHHHhccCcccceEEEe
Confidence            1122234566788999988765332    4566788899999999987776677999999999999999999999874

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.93  E-value=1.7e-24  Score=178.95  Aligned_cols=224  Identities=25%  Similarity=0.292  Sum_probs=169.3

Q ss_pred             CCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHH
Q 048785           40 PRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEA  119 (280)
Q Consensus        40 ~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~  119 (280)
                      +..+|.++|+|++|+|+++|++++.+++||+|+++      ++|++|+.++.+.++++|+++++.+++++ ..+++||++
T Consensus        17 ~~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~------~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~   89 (277)
T cd08255          17 KLPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF------GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNG   89 (277)
T ss_pred             cCcCCcccCcceeEEEEEeCCCCCCCCCCCEEEec------CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHH
Confidence            44688999999999999999999999999999986      36999999999999999999999999888 788899999


Q ss_pred             HHhhhh---------------------hhhhCCCE-EEEEecC-CcHHHHHhcC-CCeeecCCCCCcccccCCCCCcccE
Q 048785          120 LTQSAG---------------------LAKLGNSH-VTATCGA-RNIEFVKSLG-ADEVLDYKTPDGAALKSPSGRKYDA  175 (280)
Q Consensus       120 l~~~~~---------------------la~~~G~~-Vi~~~~~-~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~~~~~d~  175 (280)
                      +. ..+                     +|+.+|++ |++++++ ++.++++++| ++.+++...      ..+.++++|+
T Consensus        90 ~~-~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~d~  162 (277)
T cd08255          90 VR-DAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTA------DEIGGRGADV  162 (277)
T ss_pred             HH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccch------hhhcCCCCCE
Confidence            74 332                     78889997 9999864 7888888998 555554322      1124567999


Q ss_pred             EEECCCC-CCcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEc-----------CCHHHHHHHHHHHH
Q 048785          176 VIHCARG-IPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVI-----------PKGENLVFLVKLLK  243 (280)
Q Consensus       176 v~d~~g~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~  243 (280)
                      +|||++. ..+..++++++++|+++.+|..... .......+..+...+.+....           ...+.++++++++.
T Consensus       163 vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  241 (277)
T cd08255         163 VIEASGSPSALETALRLLRDRGRVVLVGWYGLK-PLLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLA  241 (277)
T ss_pred             EEEccCChHHHHHHHHHhcCCcEEEEEeccCCC-ccccHHHHHhccCeEEeecccccccccccccccccccHHHHHHHHH
Confidence            9999886 4577889999999999998754332 100011111122222222110           12357889999999


Q ss_pred             CCCeeEeccceecchhHHHHHHHHhcC-CCcCcEEE
Q 048785          244 EGKIKTLIDSKHLLSKAEDAWAKGADG-HATGKIIL  278 (280)
Q Consensus       244 ~g~~~~~~~~~~~~~~~~~a~~~~~~~-~~~gkvvi  278 (280)
                      ++++++.+.+.|+++++++|++.+.++ ....|+++
T Consensus       242 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~~~  277 (277)
T cd08255         242 EGRLEALITHRVPFEDAPEAYRLLFEDPPECLKVVL  277 (277)
T ss_pred             cCCccccccCccCHHHHHHHHHHHHcCCccceeeeC
Confidence            999988888899999999999999876 34456653

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.91  E-value=1.7e-24  Score=195.34  Aligned_cols=258  Identities=19%  Similarity=0.205  Sum_probs=208.9

Q ss_pred             CCCCeEEEEEeeeecChhhHHhHhccCCCC-CCC---CCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCCcce
Q 048785            9 PRKDEVLLKVEASSLNAFDWKIKKGVARPI-LPR---KFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLA   84 (280)
Q Consensus         9 ~~~~evlV~v~~~~i~~~d~~~~~g~~~~~-~~~---~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~   84 (280)
                      ..++.=+..|.|+.||..|+.+..|..++. .|.   ..-+.+|-||+|+          .+-|.||+++.   ..-+++
T Consensus      1442 ~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRvM~mv---pAksLA 1508 (2376)
T KOG1202|consen 1442 TCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRVMGMV---PAKSLA 1508 (2376)
T ss_pred             CCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEEEEee---ehhhhh
Confidence            455667899999999999999999987542 122   2347899999997          45599999987   466899


Q ss_pred             eEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEecC-C
Q 048785           85 EFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCGA-R  141 (280)
Q Consensus        85 ~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~~-~  141 (280)
                      +.+.++.+.+|.+|....+++|++.|+.|.||||||..+.+                      +|.+.|++|+.++.+ +
T Consensus      1509 Tt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~~VFTTVGSaE 1588 (2376)
T KOG1202|consen 1509 TTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGCTVFTTVGSAE 1588 (2376)
T ss_pred             hhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCCEEEEecCcHH
Confidence            99999999999999999999999999999999999977654                      777889999999955 8


Q ss_pred             cHHHHHh----cCCCeeecCCCCCcc--cccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCc-----hhhHH
Q 048785          142 NIEFVKS----LGADEVLDYKTPDGA--ALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTP-----SAMLT  210 (280)
Q Consensus       142 ~~~~~~~----~g~~~v~~~~~~~~~--~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~-----~~~~~  210 (280)
                      +++++.+    +...++-|+++.+++  .+..+.|+|+|+|++....+.++..++||+.+||+..+|-.+     ...+.
T Consensus      1589 KRefL~~rFPqLqe~~~~NSRdtsFEq~vl~~T~GrGVdlVLNSLaeEkLQASiRCLa~~GRFLEIGKfDLSqNspLGMa 1668 (2376)
T KOG1202|consen 1589 KREFLLKRFPQLQETNFANSRDTSFEQHVLWHTKGRGVDLVLNSLAEEKLQASIRCLALHGRFLEIGKFDLSQNSPLGMA 1668 (2376)
T ss_pred             HHHHHHHhchhhhhhcccccccccHHHHHHHHhcCCCeeeehhhhhHHHHHHHHHHHHhcCeeeeecceecccCCcchhh
Confidence            8888864    345677788887743  456789999999999999999999999999999999888333     23456


Q ss_pred             HHHhhhhccceeeEEEEEcCCHHHHHHHHHHHH----CCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          211 FAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLK----EGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      .+.++.+++++-+..+. .+..++..++..+++    +|.++|+.+++|+-.++++||+.|.+|++.||||+++
T Consensus      1669 vfLkNvsfHGiLLDsvm-ege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMasGKHIGKVvikv 1741 (2376)
T KOG1202|consen 1669 VFLKNVSFHGILLDSVM-EGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMASGKHIGKVVIKV 1741 (2376)
T ss_pred             hhhcccceeeeehhhhh-cCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHHHhccCccceEEEEE
Confidence            66666666666555433 345566666666555    4578999999999999999999999999999999974

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.81  E-value=1.6e-19  Score=127.69  Aligned_cols=85  Identities=34%  Similarity=0.497  Sum_probs=70.8

Q ss_pred             CCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe----------------
Q 048785           11 KDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI----------------   74 (280)
Q Consensus        11 ~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~----------------   74 (280)
                      |+||+||+.++|||++|+.++.|...  ....+|.++|||++|+|+++|++++.|++||+|++.                
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~--~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~   78 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPP--PPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRP   78 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSS--STSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccc--cCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcc
Confidence            68999999999999999999998521  234789999999999999999999999999999873                


Q ss_pred             --------ecCCCCCcceeEEeecccccccC
Q 048785           75 --------LNHFSGGGLAEFAMVKESLTASR   97 (280)
Q Consensus        75 --------~~~~~~g~~~~~~~v~~~~~~~~   97 (280)
                              .+....|+|+||+.+|++.++++
T Consensus        79 ~~c~~~~~~g~~~~G~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   79 NLCPNPEVLGLGLDGGFAEYVVVPARNLVPV  109 (109)
T ss_dssp             GGTTTBEETTTSSTCSSBSEEEEEGGGEEEE
T ss_pred             ccCCCCCEeEcCCCCcccCeEEEehHHEEEC
Confidence                    22246899999999999998874

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.66  E-value=1.9e-16  Score=115.25  Aligned_cols=120  Identities=31%  Similarity=0.402  Sum_probs=80.3

Q ss_pred             cCCCeeecCCCCCcccccCCCCCcccEEEECCC--CCCc-ccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEE
Q 048785          149 LGADEVLDYKTPDGAALKSPSGRKYDAVIHCAR--GIPW-STFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVP  225 (280)
Q Consensus       149 ~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g--~~~~-~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  225 (280)
                      +|+++++||++.+.     +..++||+||||+|  ++.+ ..+.++| ++|+++.++. ..........   ....+...
T Consensus         1 LGAd~vidy~~~~~-----~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~-~~~~~~~~~~---~~~~~~~~   70 (127)
T PF13602_consen    1 LGADEVIDYRDTDF-----AGPGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG-DLPSFARRLK---GRSIRYSF   70 (127)
T ss_dssp             CT-SEEEETTCSHH-----HTTS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S-HHHHHHHHHH---CHHCEEEC
T ss_pred             CCcCEEecCCCccc-----cCCCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC-cccchhhhhc---ccceEEEE
Confidence            68999999985434     45678999999999  5444 7888999 9999999984 1111111111   12222222


Q ss_pred             EEE-cC---CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEE
Q 048785          226 LLV-IP---KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       226 ~~~-~~---~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                      +.. ..   ..+.++++.+++++|+++|.+.++|||+++++|++.+.+++..||+||
T Consensus        71 ~~~~~~~~~~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~~~~~~GKvVl  127 (127)
T PF13602_consen   71 LFSVDPNAIRAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHERLESGHARGKVVL  127 (127)
T ss_dssp             CC-H--HHHHHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred             EEecCCCchHHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence            221 11   345699999999999999999999999999999999999999999996

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.52  E-value=5.6e-15  Score=107.95  Aligned_cols=119  Identities=26%  Similarity=0.334  Sum_probs=99.0

Q ss_pred             hhhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCC-CCCcccccccccCCcEEEE
Q 048785          125 GLAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCAR-GIPWSTFEPNLAENGKVID  200 (280)
Q Consensus       125 ~la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g-~~~~~~~~~~l~~~g~~v~  200 (280)
                      .+|+.+|++|++++++ ++.++++++|+++++++++.+  ....+.++++++|++|||+| ...++.++++++++|+++.
T Consensus         8 q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~   87 (130)
T PF00107_consen    8 QLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLLRPGGRIVV   87 (130)
T ss_dssp             HHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHHHHhccCCEEEE
Confidence            3788999999999975 789999999999999998876  33445566679999999999 4669999999999999999


Q ss_pred             eCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHC
Q 048785          201 LTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKE  244 (280)
Q Consensus       201 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  244 (280)
                      +|........++...+++++.++.++.. .+.++++++++++.+
T Consensus        88 vg~~~~~~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~la~  130 (130)
T PF00107_consen   88 VGVYGGDPISFNLMNLMFKEITIRGSWG-GSPEDFQEALQLLAQ  130 (130)
T ss_dssp             ESSTSTSEEEEEHHHHHHTTEEEEEESS-GGHHHHHHHHHHHH-
T ss_pred             EEccCCCCCCCCHHHHHhCCcEEEEEcc-CCHHHHHHHHHHhcC
Confidence            9977755666677888889999998764 457889999988763

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.61  E-value=9e-08  Score=82.28  Aligned_cols=141  Identities=9%  Similarity=-0.006  Sum_probs=101.7

Q ss_pred             hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCC-cccc-cccccCCcEEEEeC
Q 048785          126 LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIP-WSTF-EPNLAENGKVIDLT  202 (280)
Q Consensus       126 la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~~~~-~~~l~~~g~~v~~g  202 (280)
                      .++.+|++|++++. +.+.+.++.+|++.+ +.    .+..     +++|++|+|+|++. +... +..++++|+++.+|
T Consensus       220 ~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~----~e~v-----~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         220 SLRGQGARVIVTEVDPICALQAAMEGYEVM-TM----EEAV-----KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             HHHHCCCEEEEEECChhhHHHHHhcCCEEc-cH----HHHH-----cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeC
Confidence            77889999999885 578888889998533 21    1111     24799999999866 6654 89999999999998


Q ss_pred             CCchhhHHHHHhhhhccceeeEEEEEcCCHHHHH--HHHHHHHCCCe---eEeccce-----ecch-hHHHHHHHHhcCC
Q 048785          203 PTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLV--FLVKLLKEGKI---KTLIDSK-----HLLS-KAEDAWAKGADGH  271 (280)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~g~~---~~~~~~~-----~~~~-~~~~a~~~~~~~~  271 (280)
                      ..+   ..++...+..++.++.+.........++  +.++++++|++   .+.++|.     ++|+ |+.++++.+.++.
T Consensus       290 ~~~---~eId~~~L~~~el~i~g~~~~~~~~~~~~g~aI~LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~  366 (413)
T cd00401         290 HFD---VEIDVKGLKENAVEVVNIKPQVDRYELPDGRRIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRD  366 (413)
T ss_pred             CCC---CccCHHHHHhhccEEEEccCCcceEEcCCcchhhhhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCC
Confidence            542   3455555666777777654322222455  78999999988   5677777     8898 9999999998765


Q ss_pred             Cc-CcEEEe
Q 048785          272 AT-GKIILE  279 (280)
Q Consensus       272 ~~-gkvvi~  279 (280)
                      .. .|+++.
T Consensus       367 ~~~~kV~~~  375 (413)
T cd00401         367 KYEVGVYFL  375 (413)
T ss_pred             cCCCcEEEC
Confidence            43 466654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.35  E-value=3.1e-06  Score=74.79  Aligned_cols=122  Identities=16%  Similarity=0.130  Sum_probs=83.1

Q ss_pred             hhhhCCCEEEEEec-CCcHHHHHhcCCCee-ecCCCCCc--c--cccCC-----------C--CCcccEEEECCCCCC--
Q 048785          126 LAKLGNSHVTATCG-ARNIEFVKSLGADEV-LDYKTPDG--A--ALKSP-----------S--GRKYDAVIHCARGIP--  184 (280)
Q Consensus       126 la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v-~~~~~~~~--~--~~~~~-----------~--~~~~d~v~d~~g~~~--  184 (280)
                      .|+.+|++|++++. +++++.++++|++.+ ++..+...  .  ..+.+           .  .+++|++|+|++.+.  
T Consensus       183 ~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~  262 (509)
T PRK09424        183 AAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKP  262 (509)
T ss_pred             HHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCccc
Confidence            88899999999995 589999999999854 55533210  0  11111           1  157999999999632  


Q ss_pred             -----cccccccccCCcEEEEeCCCchh--hHHHHHhhhhc-cceeeEEEEEcCCHHHHHHHHHHHHCCCee
Q 048785          185 -----WSTFEPNLAENGKVIDLTPTPSA--MLTFAWQKLTF-SKKQLVPLLVIPKGENLVFLVKLLKEGKIK  248 (280)
Q Consensus       185 -----~~~~~~~l~~~g~~v~~g~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~  248 (280)
                           .+.+++.++++|++++++...+.  ..+.....+.. ++.++.+.... ..+.-.++.++++++.+.
T Consensus       263 aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n~-P~~~p~~As~lla~~~i~  333 (509)
T PRK09424        263 APKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTDL-PSRLPTQSSQLYGTNLVN  333 (509)
T ss_pred             CcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeCCC-chhHHHHHHHHHHhCCcc
Confidence                 38899999999999999864322  23333344554 78888876633 234444689999998775

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=96.80  E-value=0.018  Score=47.86  Aligned_cols=58  Identities=31%  Similarity=0.434  Sum_probs=40.9

Q ss_pred             CEEEEEecCCcHHHHHhcC-CCeeecCCCCCcccccCCCCCcccEEEECCCCCC-cccccccccC
Q 048785          132 SHVTATCGARNIEFVKSLG-ADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIP-WSTFEPNLAE  194 (280)
Q Consensus       132 ~~Vi~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~  194 (280)
                      .++|+++|..+..+.+++| .+.|+.|++..     ......--+++|+.|+.. ...+...++.
T Consensus       163 ~~~vglTS~~N~~Fve~lg~Yd~V~~Yd~i~-----~l~~~~~~v~VDfaG~~~~~~~Lh~~l~d  222 (314)
T PF11017_consen  163 PKVVGLTSARNVAFVESLGCYDEVLTYDDID-----SLDAPQPVVIVDFAGNGEVLAALHEHLGD  222 (314)
T ss_pred             ceEEEEecCcchhhhhccCCceEEeehhhhh-----hccCCCCEEEEECCCCHHHHHHHHHHHhh
Confidence            4999999998999999999 57888886644     122244578999999866 3344444433

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=95.57  E-value=0.024  Score=46.11  Aligned_cols=124  Identities=14%  Similarity=0.065  Sum_probs=69.6

Q ss_pred             CCCCCCCEEEEeecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh-----------------
Q 048785           63 KNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-----------------  125 (280)
Q Consensus        63 ~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----------------  125 (280)
                      +.+++||+++...      +|.++.. +...++++++++.+-.+..-...  .....+.....                 
T Consensus        65 ~p~~~g~~~~i~p------~~~~~~~-~~~~~i~i~p~~afgtg~h~tt~--~~l~~l~~~~~~~~~VLDiGcGsG~l~i  135 (250)
T PRK00517         65 HPIRIGDRLWIVP------SWEDPPD-PDEINIELDPGMAFGTGTHPTTR--LCLEALEKLVLPGKTVLDVGCGSGILAI  135 (250)
T ss_pred             CCEEEcCCEEEEC------CCcCCCC-CCeEEEEECCCCccCCCCCHHHH--HHHHHHHhhcCCCCEEEEeCCcHHHHHH
Confidence            4578898887653      4545433 56677888888776655422222  12223322111                 


Q ss_pred             hhhhCCC-EEEEEec-CCcHHHHHhc----CCCeeecCCCCCcccccCCCCCcccEEEECCCCCC----cccccccccCC
Q 048785          126 LAKLGNS-HVTATCG-ARNIEFVKSL----GADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIP----WSTFEPNLAEN  195 (280)
Q Consensus       126 la~~~G~-~Vi~~~~-~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~----~~~~~~~l~~~  195 (280)
                      .+...|+ +|++++. +...+.+++.    +....+       ...  .....||+|+.+.....    ++.+.+.|+++
T Consensus       136 ~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~-------~~~--~~~~~fD~Vvani~~~~~~~l~~~~~~~Lkpg  206 (250)
T PRK00517        136 AAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNV-------YLP--QGDLKADVIVANILANPLLELAPDLARLLKPG  206 (250)
T ss_pred             HHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceE-------EEc--cCCCCcCEEEEcCcHHHHHHHHHHHHHhcCCC
Confidence            3344676 6999994 4555555432    221000       000  11115999997665432    56788889999


Q ss_pred             cEEEEeCCC
Q 048785          196 GKVIDLTPT  204 (280)
Q Consensus       196 g~~v~~g~~  204 (280)
                      |+++..+..
T Consensus       207 G~lilsgi~  215 (250)
T PRK00517        207 GRLILSGIL  215 (250)
T ss_pred             cEEEEEECc
Confidence            999976533

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=95.52  E-value=0.027  Score=46.38  Aligned_cols=143  Identities=13%  Similarity=0.036  Sum_probs=71.8

Q ss_pred             hhhCCC--EEEEEec-CCcHHHHHh----cCCCeeecCCCCCcccccCCCCCcccEEEECCC-----C--CCcccccccc
Q 048785          127 AKLGNS--HVTATCG-ARNIEFVKS----LGADEVLDYKTPDGAALKSPSGRKYDAVIHCAR-----G--IPWSTFEPNL  192 (280)
Q Consensus       127 a~~~G~--~Vi~~~~-~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g-----~--~~~~~~~~~l  192 (280)
                      ++..|.  +|++++. ++..+.+++    +|.+.+- ....+...+. ...+.||+|+....     +  ..++.+.+.|
T Consensus        96 a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~-~~~~d~~~l~-~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~L  173 (272)
T PRK11873         96 ARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVE-FRLGEIEALP-VADNSVDVIISNCVINLSPDKERVFKEAFRVL  173 (272)
T ss_pred             HHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEE-EEEcchhhCC-CCCCceeEEEEcCcccCCCCHHHHHHHHHHHc
Confidence            344453  7999995 466666654    3432221 1001111111 12457999985432     1  2378899999


Q ss_pred             cCCcEEEEeCCCchhhH-HHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCC---eeEeccceecchhHHHHHHHH-
Q 048785          193 AENGKVIDLTPTPSAML-TFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGK---IKTLIDSKHLLSKAEDAWAKG-  267 (280)
Q Consensus       193 ~~~g~~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~---~~~~~~~~~~~~~~~~a~~~~-  267 (280)
                      +++|+++..+....... ...............+   ...   ..++.+++.+..   ++......++++++.++++.+ 
T Consensus       174 kpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~e~~~~l~~aGf~~v~i~~~~~~~l~~~~~~~~~~~  247 (272)
T PRK11873        174 KPGGRFAISDVVLRGELPEEIRNDAELYAGCVAG---ALQ---EEEYLAMLAEAGFVDITIQPKREYRIPDAREFLEDWG  247 (272)
T ss_pred             CCCcEEEEEEeeccCCCCHHHHHhHHHHhccccC---CCC---HHHHHHHHHHCCCCceEEEeccceecccHHHHHHHhc
Confidence            99999987642221110 0011111111000100   112   334455555533   334455678899999999988 


Q ss_pred             -hcCCCcCcEE
Q 048785          268 -ADGHATGKII  277 (280)
Q Consensus       268 -~~~~~~gkvv  277 (280)
                       .++...++.+
T Consensus       248 ~~~~~~~~~~~  258 (272)
T PRK11873        248 IAPGRQLDGYI  258 (272)
T ss_pred             cccccccCceE
Confidence             5554444444

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.96  E-value=0.1  Score=46.65  Aligned_cols=80  Identities=20%  Similarity=0.213  Sum_probs=54.4

Q ss_pred             hhhhCCCEEEEEec-CCcHHHHHhcCCCee-ecCCCCC------cc---------cccCC--CCCcccEEEECC---CCC
Q 048785          126 LAKLGNSHVTATCG-ARNIEFVKSLGADEV-LDYKTPD------GA---------ALKSP--SGRKYDAVIHCA---RGI  183 (280)
Q Consensus       126 la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v-~~~~~~~------~~---------~~~~~--~~~~~d~v~d~~---g~~  183 (280)
                      +++.+|++|++++. +++++.++++|++.+ ++..+..      ..         +....  ..+++|++|+|+   |.+
T Consensus       182 ~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~  261 (511)
T TIGR00561       182 AANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP  261 (511)
T ss_pred             HHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC
Confidence            78889999999885 478889999998753 2321100      00         00111  135699999999   543


Q ss_pred             C----cccccccccCCcEEEEeCCCc
Q 048785          184 P----WSTFEPNLAENGKVIDLTPTP  205 (280)
Q Consensus       184 ~----~~~~~~~l~~~g~~v~~g~~~  205 (280)
                      .    .+.+++.+++++.++++....
T Consensus       262 aP~Lit~emv~~MKpGsvIVDlA~d~  287 (511)
T TIGR00561       262 APKLITEEMVDSMKAGSVIVDLAAEQ  287 (511)
T ss_pred             CCeeehHHHHhhCCCCCEEEEeeeCC
Confidence            2    567899999999999986443

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=89.21  E-value=0.57  Score=38.86  Aligned_cols=131  Identities=15%  Similarity=0.134  Sum_probs=70.0

Q ss_pred             CCCCCCEEEEeecCCCCCcceeEEeecccccccCCCCCChhhhccc-chhHHHHHHHHHhhhh-----------------
Q 048785           64 NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGL-PLAGLTALEALTQSAG-----------------  125 (280)
Q Consensus        64 ~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~-~~~~~~a~~~l~~~~~-----------------  125 (280)
                      .++.|++.+...      +|.++..-....++++.+++.+=  ... |... -+..+|.+...                 
T Consensus       108 P~rig~~f~I~P------sw~~~~~~~~~~~i~lDPGlAFG--TG~HpTT~-lcL~~Le~~~~~g~~vlDvGcGSGILaI  178 (300)
T COG2264         108 PVRIGERFVIVP------SWREYPEPSDELNIELDPGLAFG--TGTHPTTS-LCLEALEKLLKKGKTVLDVGCGSGILAI  178 (300)
T ss_pred             cEEeeeeEEECC------CCccCCCCCCceEEEEccccccC--CCCChhHH-HHHHHHHHhhcCCCEEEEecCChhHHHH
Confidence            467888877653      44443222134567777766431  111 2221 22233433322                 


Q ss_pred             hhhhCCC-EEEEEec-CCc----HHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCC----cccccccccCC
Q 048785          126 LAKLGNS-HVTATCG-ARN----IEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIP----WSTFEPNLAEN  195 (280)
Q Consensus       126 la~~~G~-~Vi~~~~-~~~----~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~----~~~~~~~l~~~  195 (280)
                      .+..+|+ +|++++- +..    .+.++..+.+...  ............++.||+|+-.+=-..    .+.+...++|+
T Consensus       179 Aa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~--~~~~~~~~~~~~~~~~DvIVANILA~vl~~La~~~~~~lkpg  256 (300)
T COG2264         179 AAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLV--QAKGFLLLEVPENGPFDVIVANILAEVLVELAPDIKRLLKPG  256 (300)
T ss_pred             HHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhh--hcccccchhhcccCcccEEEehhhHHHHHHHHHHHHHHcCCC
Confidence            5557898 7999994 333    3333444443211  111112222233467999997663222    56778889999


Q ss_pred             cEEEEeCCCc
Q 048785          196 GKVIDLTPTP  205 (280)
Q Consensus       196 g~~v~~g~~~  205 (280)
                      |++++-|...
T Consensus       257 g~lIlSGIl~  266 (300)
T COG2264         257 GRLILSGILE  266 (300)
T ss_pred             ceEEEEeehH
Confidence            9999877443

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=86.54  E-value=1.7  Score=33.36  Aligned_cols=69  Identities=17%  Similarity=0.174  Sum_probs=42.8

Q ss_pred             CCEEEEEecC-CcHHHH----HhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCC---cccccccccCCcEEEEe
Q 048785          131 NSHVTATCGA-RNIEFV----KSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIP---WSTFEPNLAENGKVIDL  201 (280)
Q Consensus       131 G~~Vi~~~~~-~~~~~~----~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---~~~~~~~l~~~g~~v~~  201 (280)
                      ..+||++.++ ++.+..    ++||.+.+..-.....+.+...  ..+|.+|-.=|...   ++.++..|+++||+|.-
T Consensus        58 ~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~--~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~n  134 (187)
T COG2242          58 SGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL--PSPDAIFIGGGGNIEEILEAAWERLKPGGRLVAN  134 (187)
T ss_pred             CceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC--CCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEE
Confidence            4599999975 444433    5788764432222222232211  15899985444322   88999999999999854

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=86.51  E-value=0.28  Score=40.85  Aligned_cols=74  Identities=15%  Similarity=-0.020  Sum_probs=41.8

Q ss_pred             hhhhCCC-EEEEEec-CCcHHHH----HhcCCC-eeecCCCCCcccccCCCCCcccEEEECCCCCC----cccccccccC
Q 048785          126 LAKLGNS-HVTATCG-ARNIEFV----KSLGAD-EVLDYKTPDGAALKSPSGRKYDAVIHCARGIP----WSTFEPNLAE  194 (280)
Q Consensus       126 la~~~G~-~Vi~~~~-~~~~~~~----~~~g~~-~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~----~~~~~~~l~~  194 (280)
                      .|..+|+ +|++++- +...+.+    +..|.. .+.-..      .......+||+|+-..-...    ++...+.+++
T Consensus       178 aA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~------~~~~~~~~~dlvvANI~~~vL~~l~~~~~~~l~~  251 (295)
T PF06325_consen  178 AAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL------SEDLVEGKFDLVVANILADVLLELAPDIASLLKP  251 (295)
T ss_dssp             HHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC------TSCTCCS-EEEEEEES-HHHHHHHHHHCHHHEEE
T ss_pred             HHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE------ecccccccCCEEEECCCHHHHHHHHHHHHHhhCC
Confidence            6667899 8999994 4333332    333322 121110      01112367999997766543    5567778899


Q ss_pred             CcEEEEeCCCc
Q 048785          195 NGKVIDLTPTP  205 (280)
Q Consensus       195 ~g~~v~~g~~~  205 (280)
                      +|++++-|...
T Consensus       252 ~G~lIlSGIl~  262 (295)
T PF06325_consen  252 GGYLILSGILE  262 (295)
T ss_dssp             EEEEEEEEEEG
T ss_pred             CCEEEEccccH
Confidence            99998766433

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=84.37  E-value=3.5  Score=32.37  Aligned_cols=74  Identities=19%  Similarity=0.200  Sum_probs=46.8

Q ss_pred             hhhhCCCEEEEEecCCc-----HHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCc-ccccccccCCcEEE
Q 048785          126 LAKLGNSHVTATCGARN-----IEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPW-STFEPNLAENGKVI  199 (280)
Q Consensus       126 la~~~G~~Vi~~~~~~~-----~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~-~~~~~~l~~~g~~v  199 (280)
                      |++..| +|+.+.+...     .+.++.+|...|.......  ...+.....||.|+-+.+-+.+ +..++.|++||+++
T Consensus        90 la~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG--~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv  166 (209)
T COG2518          90 LARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDG--SKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLV  166 (209)
T ss_pred             HHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc--ccCCCCCCCcCEEEEeeccCCCCHHHHHhcccCCEEE
Confidence            344444 9999986532     3345677874442221111  1222344679999988887765 57889999999998


Q ss_pred             EeC
Q 048785          200 DLT  202 (280)
Q Consensus       200 ~~g  202 (280)
                      ..-
T Consensus       167 ~Pv  169 (209)
T COG2518         167 IPV  169 (209)
T ss_pred             EEE
Confidence            764

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=84.14  E-value=1.3  Score=38.91  Aligned_cols=70  Identities=9%  Similarity=-0.064  Sum_probs=48.1

Q ss_pred             hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCC-cc-cccccccCCcEEEEeC
Q 048785          126 LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIP-WS-TFEPNLAENGKVIDLT  202 (280)
Q Consensus       126 la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~~-~~~~~l~~~g~~v~~g  202 (280)
                      .++.+|++|++++.+ .+...+...|+. +.+.    .+..     .++|++|+|+|+.. +. ..+..+++++.++..|
T Consensus       230 ~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l----~eal-----~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG  299 (425)
T PRK05476        230 RLRGLGARVIVTEVDPICALQAAMDGFR-VMTM----EEAA-----ELGDIFVTATGNKDVITAEHMEAMKDGAILANIG  299 (425)
T ss_pred             HHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCH----HHHH-----hCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcC
Confidence            677889999988854 555555555654 2211    1111     25899999999865 54 5788899999999888


Q ss_pred             CCc
Q 048785          203 PTP  205 (280)
Q Consensus       203 ~~~  205 (280)
                      ..+
T Consensus       300 ~~d  302 (425)
T PRK05476        300 HFD  302 (425)
T ss_pred             CCC
Confidence            554

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=83.51  E-value=2.5  Score=35.19  Aligned_cols=34  Identities=15%  Similarity=0.089  Sum_probs=24.8

Q ss_pred             CCcccEEEECCCCCC----cccccccccCCcEEEEeCC
Q 048785          170 GRKYDAVIHCARGIP----WSTFEPNLAENGKVIDLTP  203 (280)
Q Consensus       170 ~~~~d~v~d~~g~~~----~~~~~~~l~~~g~~v~~g~  203 (280)
                      ..+||+|+.......    +..+.+.|+++|+++..|.
T Consensus       223 ~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi  260 (288)
T TIGR00406       223 EGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGI  260 (288)
T ss_pred             CCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            357999997654332    5567789999999987664

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=83.27  E-value=1.5  Score=38.26  Aligned_cols=70  Identities=14%  Similarity=-0.011  Sum_probs=48.6

Q ss_pred             hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCC-cc-cccccccCCcEEEEeC
Q 048785          126 LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIP-WS-TFEPNLAENGKVIDLT  202 (280)
Q Consensus       126 la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~~-~~~~~l~~~g~~v~~g  202 (280)
                      .++.+|++|+++.. +.+...+...|+. +.+.    .+.+     .+.|++|+++|+.. ++ ..+..+++++.++..|
T Consensus       213 ~ak~~Ga~ViV~d~dp~r~~~A~~~G~~-v~~l----eeal-----~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G  282 (406)
T TIGR00936       213 RARGMGARVIVTEVDPIRALEAAMDGFR-VMTM----EEAA-----KIGDIFITATGNKDVIRGEHFENMKDGAIVANIG  282 (406)
T ss_pred             HHhhCcCEEEEEeCChhhHHHHHhcCCE-eCCH----HHHH-----hcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEEC
Confidence            77788999999874 4555555666653 3221    1111     24799999999866 54 4788999999999887


Q ss_pred             CCc
Q 048785          203 PTP  205 (280)
Q Consensus       203 ~~~  205 (280)
                      ..+
T Consensus       283 ~~~  285 (406)
T TIGR00936       283 HFD  285 (406)
T ss_pred             CCC
Confidence            544

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PTZ00414 10 kDa heat shock protein; Provisional

Probab=82.50  E-value=1.7  Score=29.61  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=19.2

Q ss_pred             eEEEEEeCCCCC----CCCCCCEEEEe
Q 048785           52 AGEIIEVGSEVK----NFKAGYNVVAI   74 (280)
Q Consensus        52 ~G~V~~vG~~v~----~~~~Gd~V~~~   74 (280)
                      -|+|+++|+...    .+++||+|+.-
T Consensus        46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~~   72 (100)
T PTZ00414         46 EGTVVAVAAATKDWTPTVKVGDTVLLP   72 (100)
T ss_pred             eeEEEEECCCCccccceecCCCEEEEc
Confidence            599999999864    38999999853

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=82.26  E-value=1.3  Score=35.46  Aligned_cols=70  Identities=21%  Similarity=0.265  Sum_probs=44.8

Q ss_pred             CCCEEEEEe-cCCcHHHHH----hcCCCeeecCCCCCcccccCCCCCcccEEEECC-----CCCC--cccccccccCCcE
Q 048785          130 GNSHVTATC-GARNIEFVK----SLGADEVLDYKTPDGAALKSPSGRKYDAVIHCA-----RGIP--WSTFEPNLAENGK  197 (280)
Q Consensus       130 ~G~~Vi~~~-~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~-----g~~~--~~~~~~~l~~~g~  197 (280)
                      .|++|.+++ +++..+.++    +-|..  ++|.....+.+.. .++.||+|++.-     .++.  +..+.++++|+|+
T Consensus        80 ~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~-~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~  156 (243)
T COG2227          80 LGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLAS-AGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGI  156 (243)
T ss_pred             CCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHh-cCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcE
Confidence            589999999 555555554    23333  5565555333322 237899998743     2322  6678999999999


Q ss_pred             EEEeC
Q 048785          198 VIDLT  202 (280)
Q Consensus       198 ~v~~g  202 (280)
                      +..--
T Consensus       157 lf~ST  161 (243)
T COG2227         157 LFLST  161 (243)
T ss_pred             EEEec
Confidence            87543

>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts

Probab=82.11  E-value=1.8  Score=29.22  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=19.7

Q ss_pred             ceEEEEEeCCCC---------CCCCCCCEEEEe
Q 048785           51 VAGEIIEVGSEV---------KNFKAGYNVVAI   74 (280)
Q Consensus        51 ~~G~V~~vG~~v---------~~~~~Gd~V~~~   74 (280)
                      ..|+|+++|+..         ..+++||+|+..
T Consensus        35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~   67 (93)
T cd00320          35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLFP   67 (93)
T ss_pred             eEEEEEEECCCeECCCCCCccccccCCCEEEEC
Confidence            479999999984         259999999854

It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=81.39  E-value=2.2  Score=35.64  Aligned_cols=75  Identities=13%  Similarity=0.186  Sum_probs=49.9

Q ss_pred             hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCC-cccccccccCCcEEEEeCC
Q 048785          126 LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIP-WSTFEPNLAENGKVIDLTP  203 (280)
Q Consensus       126 la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g~~v~~g~  203 (280)
                      .++.+|++|++.+++ ++.+.++++|...+ ...+. .+.     -.++|+||+|+.... -...++.+++++.++++..
T Consensus       170 ~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~-~~~~l-~~~-----l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        170 TLKALGANVTVGARKSAHLARITEMGLSPF-HLSEL-AEE-----VGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             HHHHCCCEEEEEECCHHHHHHHHHcCCeee-cHHHH-HHH-----hCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEcc
Confidence            666789999988865 66777778886532 21110 111     124899999987543 3456677899999998876


Q ss_pred             Cchh
Q 048785          204 TPSA  207 (280)
Q Consensus       204 ~~~~  207 (280)
                      .++.
T Consensus       243 ~pgg  246 (296)
T PRK08306        243 KPGG  246 (296)
T ss_pred             CCCC
Confidence            6543

>PRK00364 groES co-chaperonin GroES; Reviewed

Probab=80.41  E-value=1.9  Score=29.25  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=19.3

Q ss_pred             ceEEEEEeCCCCC---------CCCCCCEEEEe
Q 048785           51 VAGEIIEVGSEVK---------NFKAGYNVVAI   74 (280)
Q Consensus        51 ~~G~V~~vG~~v~---------~~~~Gd~V~~~   74 (280)
                      ..|+|+++|+...         .+++||+|+..
T Consensus        36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~   68 (95)
T PRK00364         36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFG   68 (95)
T ss_pred             ceEEEEEECCCeECCCCCEeecccCCCCEEEEc
Confidence            3799999999642         48999999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	280
3tqh_A	321	Structure Of The Quinone Oxidoreductase From Coxiel		4e-13
2vn8_A	375	Crystal Structure Of Human Reticulon 4 Interacting		2e-11
3gaz_A	343	Crystal Structure Of An Alcohol Dehydrogenase Super		2e-09
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		4e-09
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		1e-06
3b6z_A	371	Lovastatin Polyketide Enoyl Reductase (Lovc) Comple		1e-05
2j8z_A	354	Crystal Structure Of Human P53 Inducible Oxidoreduc		3e-05
2oby_A	338	Crystal Structure Of Human P53 Inducible Oxidoreduc		3e-05
3gqv_A	371	Lovastatin Polyketide Enoyl Reductase (Lovc) Mutant		4e-05
4dup_A	353	Crystal Structure Of A Quinone Oxidoreductase From		6e-05
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		2e-04
3fbg_A	346	Crystal Structure Of A Putative Arginate Lyase From		2e-04
2wek_A	341	Crystal Structure Of The Human Mgc45594 Gene Produc		4e-04
2x7h_A	370	Crystal Structure Of The Human Mgc45594 Gene Produc		4e-04
2c0c_A	362	Structure Of The Mgc45594 Gene Product Length = 362		4e-04
4dvj_A	363	Crystal Structure Of A Putative Zinc-Dependent Alco		7e-04
3goh_A	315	Crystal Structure Of Alcohol Dehydrogenase Superfam		8e-04

>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella Burnetii Length = 321

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 125/307 (40%), Gaps = 40/307 (13%)
Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKG---VARPILPRKFPYIPATDVAGEIIEV 58
           V  P P  RK++ L+KV A+SLN  D+K + G   VA+  L    P     D +GE+IE+
Sbjct: 24  VDTPTPEYRKNQXLIKVHAASLNPIDYKTRNGSGFVAKK-LKNNLPSGLGYDFSGEVIEL 82
Query: 59  GSEVKNFKAGYNVVAI------------------------LNHFSGGGLAEFAMVKESLT 94
           GS+V N   G  V  I                        L   S   L   ++    LT
Sbjct: 83  GSDVNNVNIGDKVXGIAGFPDHPCCYAEYVCASPDTIIQKLEKLS--FLQAASLPTAGLT 140
Query: 95  ASRPLEVSXXXXXXXXXXXXXXXXXXXQSAGLAKLGNSHVTATCGARNIEFVKSLGADEV 154
           A + L  +                    +  LAK   + V  T   RN  F+K+LGA++ 
Sbjct: 141 ALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQC 200
Query: 155 LDYKTPDG-AALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDL-TPTPSAMLTFA 212
           ++Y   D   A+ +P     DAVI    G         L E G ++ + T T   ++  A
Sbjct: 201 INYHEEDFLLAISTP----VDAVIDLVGGDVGIQSIDCLKETGCIVSVPTITAGRVIEVA 256
Query: 213 WQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHA 272
            QK     ++   LL     E L +L KL+ E K++  I     LS+A  A      GH 
Sbjct: 257 KQK----HRRAFGLLKQFNIEELHYLGKLVSEDKLRIEISRIFQLSEAVTAHELLETGHV 312
Query: 273 TGKIILE 279
            GK++ +
Sbjct: 313 RGKLVFK 319

>pdb|2VN8|A Chain A, Crystal Structure Of Human Reticulon 4 Interacting Protein 1 In Complex With Nadph Length = 375

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 126/338 (37%), Gaps = 71/338 (21%)
Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRK------------FPYIPAT 49
           +H P      +EV++KV A+S+N  D  ++ G     L  K            FP     
Sbjct: 47  IHYP------NEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGR 100
Query: 50  DVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSXXXXXXX 109
           DV+G ++E G +VK FK G  V A +  +  G L+EF +V  +  + +P  ++       
Sbjct: 101 DVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASL 160
Query: 110 XXXXXXXXXXXXQSAGL--------------------------AKLGNSHVTATCGARNI 143
                       +  GL                           K  ++HVTA C     
Sbjct: 161 PYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDAS 220
Query: 144 EFVKSLGADEVLDYKT-----------PDGAALKSPSG----------RKYDAVIHCARG 182
           E V+ LGAD+V+DYK+           P    L +  G          +K+    +    
Sbjct: 221 ELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLV 280
Query: 183 IPWSTFEPNLA-ENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKL 241
            P+      L   +G +       S  L   W+ + +          +  G  L  + +L
Sbjct: 281 TPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWA-----FFMASGPCLDDIAEL 335
Query: 242 LKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILE 279
           +  GKI+ +I+     SK  +A+ K   GHA GK ++ 
Sbjct: 336 VDAGKIRPVIEQTFPFSKVPEAFLKVERGHARGKTVIN 373

>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans Length = 343

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 81/194 (41%), Gaps = 25/194 (12%)
Query: 7   PTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFK 66
           P P   +VL+++EAS  N  D KI+ G A P   +  P I   D+AG ++ VG EV +F+
Sbjct: 28  PQPAPGQVLVQIEASGTNPLDAKIRAGEA-PHAQQPLPAILGXDLAGTVVAVGPEVDSFR 86
Query: 67  AGYNVVAILNHFSG--GGLAEFAMVKESLTASRPLEVSXXXXXXXXXXXXXXXXXXXQSA 124
            G  V  +     G  G  A+FA V   L AS+P  ++                     A
Sbjct: 87  VGDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTXRQASVLPLVFITAWEGLVDRA 146
Query: 125 ----------------------GLAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPDG 162
                                  +A    + V AT    ++E+V+ LGA  +   + P+ 
Sbjct: 147 QVQDGQTVLIQGGGGGVGHVAIQIALARGARVFATARGSDLEYVRDLGATPIDASREPED 206
Query: 163 AALKSPSGRKYDAV 176
            A +  +G+ +D V
Sbjct: 207 YAAEHTAGQGFDLV 220

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 126/325 (38%), Gaps = 52/325 (16%)
Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           +PVP P   EV ++++A++LN  D  ++KGVA P LP   P++   D +G +  VG  V+
Sbjct: 20  LPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLP--LPHVLGADGSGVVDAVGPGVE 77
Query: 64  NFKAGYNVV------------------------AILNHFSGGGLAEFAMVKESLTASRPL 99
            F  G  VV                         IL     G  AE+ ++ E+  A +P 
Sbjct: 78  GFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPK 137
Query: 100 EVSXXXXXXXXXXXXXXXXXXXQSAG----------------------LAKLGNSHVTAT 137
            +S                      G                      +AKL  + V AT
Sbjct: 138 NLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIAT 197
Query: 138 CGARN-IEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAE 194
            G+ + +   K+LGADE ++Y  PD      +   G+  D V+     + +       A 
Sbjct: 198 AGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTGALYFEGVIKATAN 257
Query: 195 NGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSK 254
            G++     +     T  +  + + +  ++   +  K   L  +++ ++EGK+K ++   
Sbjct: 258 GGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMASK-SRLFPILRFVEEGKLKPVVGQV 316
Query: 255 HLLSKAEDAWAKGADGHATGKIILE 279
             L  A +      +    GK++L+
Sbjct: 317 LPLEAAAEGHRLLEERRVFGKVVLQ 341

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGV--ARPILPRKFPYIPATDVAGEIIEVGSE 61
           + VP P+  +VL+KV A  +N  +  I+ G    +P+LP    Y P +DVAG I  VG  
Sbjct: 50  IAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLP----YTPGSDVAGVIEAVGDN 105
Query: 62  VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRP 98
              FK G  V    +    GG AE+A+  +      P
Sbjct: 106 ASAFKKGDRVFT--SSTISGGYAEYALAADHTVYKLP 140

>pdb|3B6Z|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Complexed With 2'- Phosphoadenosyl Isomer Of Crotonoyl-Coa Length = 371

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 85/224 (37%), Gaps = 46/224 (20%)
Query: 5   PVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKN 64
           P P   +D+V ++VEA ++N  D K++   A P     + ++  TD AG ++ VGS+V +
Sbjct: 30  PCPMLPRDQVYVRVEAVAINPSDTKMRGQFATP-----WAFL-GTDYAGTVVAVGSDVTH 83
Query: 65  FKAGYNVVAILNHFS-----GGGLAEFAMVKESL------------TASRPLEVSXXXXX 107
            + G  V    N         G  +++ + +  +             A+ P  +S     
Sbjct: 84  IQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLA 143
Query: 108 XXXXXXXXXXXXXXQSAGLAK------LGNSHVT----------------ATCGARNIEF 145
                         Q    +K       G S  T                ATC   N + 
Sbjct: 144 MKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDL 203
Query: 146 VKSLGADEVLDYKTPDGA-ALKSPSGRKYDAVIHCARGIPWSTF 188
            KS GA+EV DY+ P+ A  +++ +       + C   +  +TF
Sbjct: 204 AKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNVESTTF 247

>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase ( Tp53i3,Pig3) Length = 354

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 88/220 (40%), Gaps = 31/220 (14%)
Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           V  P+P + EVLLKV AS+LN  D   ++G   P  P     I   + +G + E+G   +
Sbjct: 42  VAKPSPGEGEVLLKVAASALNRADLMQRQGQYDP--PPGASNILGLEASGHVAELGPGCQ 99
Query: 64  -NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSXXXXXXX------------X 110
            ++K G   +A+L    GGG A++  V E L    P  ++                    
Sbjct: 100 GHWKIGDTAMALL---PGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHL 156
Query: 111 XXXXXXXXXXXQSAGLAKLGNS--HVTATCGA---------RNIEFVKSLGADEVLDYKT 159
                        AGL+ +G +   +T   GA         + ++  + LGA    +YK 
Sbjct: 157 VGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKK 216
Query: 160 PD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGK 197
            D   A LK   G   + ++ C  G  W      LA +G+
Sbjct: 217 EDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGR 256

>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp53i3,Pig3) Length = 338

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 31/217 (14%)
Query: 7   PTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK-NF 65
           P+P + EVLLKV AS+LN  D   ++G   P  P     I   + +G + E+G   + ++
Sbjct: 29  PSPGEGEVLLKVAASALNRADLMQRQGQYDP--PPGASNILGLEASGHVAELGPGCQGHW 86
Query: 66  KAGYNVVAILNHFSGGGLAEFAMVKESLTASRP-----LEVSXXXXXXXXXXXXXXXXXX 120
           K G   +A+L    GGG A++  V E L    P      + +                  
Sbjct: 87  KIGDTAMALL---PGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGN 143
Query: 121 XQS-------AGLAKLGNS--HVTATCGA---------RNIEFVKSLGADEVLDYKTPD- 161
            Q+       AGL+ +G +   +T   GA         + ++  + LGA    +YK  D 
Sbjct: 144 VQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDF 203
Query: 162 -GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGK 197
             A LK   G   + ++ C  G  W      LA +G+
Sbjct: 204 SEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGR 240

>pdb|3GQV|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Mutant K54s With Bound Nadp Length = 371

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 84/224 (37%), Gaps = 46/224 (20%)
Query: 5   PVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKN 64
           P P   +D+V ++VEA ++N  D  ++   A P     + ++  TD AG ++ VGS+V +
Sbjct: 30  PCPMLPRDQVYVRVEAVAINPSDTSMRGQFATP-----WAFL-GTDYAGTVVAVGSDVTH 83
Query: 65  FKAGYNVVAILNHFS-----GGGLAEFAMVKESL------------TASRPLEVSXXXXX 107
            + G  V    N         G  +++ + +  +             A+ P  +S     
Sbjct: 84  IQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLA 143
Query: 108 XXXXXXXXXXXXXXQSAGLAK------LGNSHVT----------------ATCGARNIEF 145
                         Q    +K       G S  T                ATC   N + 
Sbjct: 144 MKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDL 203
Query: 146 VKSLGADEVLDYKTPDGA-ALKSPSGRKYDAVIHCARGIPWSTF 188
            KS GA+EV DY+ P+ A  +++ +       + C   +  +TF
Sbjct: 204 AKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNVESTTF 247

>pdb|4DUP|A Chain A, Crystal Structure Of A Quinone Oxidoreductase From Rhizobium Etli Cfn 42 Length = 353

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 32/213 (15%)
Query: 5   PVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKN 64
           P+P   + EVL++ EA  +N  D   ++G   P  P+    I   +++GEI+ VG  V  
Sbjct: 49  PLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPP--PKDASPILGLELSGEIVGVGPGVSG 106
Query: 65  FKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSXXXXXXXXXXXXXXXXXXXQSA 124
           +  G  V  + N   GG  AE+ ++        P                       Q A
Sbjct: 107 YAVGDKVCGLAN---GGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQXA 163
Query: 125 G----------------------LAKLGNSHVTATCGARN-IEFVKSLGADEVLDYKTPD 161
           G                      LA+   + V AT G+    E  + LGA   ++Y++ D
Sbjct: 164 GLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSED 223
Query: 162 GAA-LKSPSGRKYDAVIHCARGIPWSTFEPNLA 193
            AA +K+ +G+  D ++     I  + FE N+A
Sbjct: 224 FAAVIKAETGQGVDIILDX---IGAAYFERNIA 253

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPI-----LPRKFPYIPATDVAGEIIEV 58
           +P+P P+  +VL+K+EA+ +   D  +++G    +     L  K P     ++AG I EV
Sbjct: 18  IPIPKPKGSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGRIEEV 77
Query: 59  GSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRP 98
           G EV  +  G ++VA+ N + G G   +  + E      P
Sbjct: 78  GDEVVGYSKG-DLVAV-NPWEGEGNCYYCRIGEEHLCDSP 115

>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From Staphylococcus Haemolyticus Length = 346

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 3   HVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEV 62
           ++ +P P+  E+L+K+++ S+N  D K      R +   K P +   D  G +  VG+EV
Sbjct: 24  NLDIPEPKVHEILVKIQSISVNPVDTK-----QRLMDVSKAPRVLGFDAIGVVESVGNEV 78
Query: 63  KNFKAGYNVVAILNHFSG-----GGLAEFAMVKESLTASRPLEVS 102
             F  G ++V    ++SG     G  AE+ ++ E L A  P  +S
Sbjct: 79  TMFNQG-DIV----YYSGSPDQNGSNAEYQLINERLVAKAPKNIS 118

>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Diclofenac Length = 341

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 78/218 (35%), Gaps = 27/218 (12%)
Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
            PVP P   ++L++     +NA D     G   P +  K P+    +  GE++ +G    
Sbjct: 25  CPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSV--KPPFDIGFEGIGEVVALGLSAS 82
Query: 64  NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPL--------------------EVSX 103
              A Y V   + + + G  AE+ +V  S+    P                     E+  
Sbjct: 83  ---ARYTVGQAVAYMAPGSFAEYTVVPASIATPVPSVKPEYLTLLVSGTTAYISLKELGG 139
Query: 104 XXXXXXXXXXXXXXXXXXQSAGLAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKT-PD 161
                              +  L+K    HV  TC +     F+KSLG D  ++YKT P 
Sbjct: 140 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPV 199
Query: 162 GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVI 199
           G  LK       D V     G  +      LA  G++I
Sbjct: 200 GTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLI 237

>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In Complex With Fenoprofen Length = 370

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 78/218 (35%), Gaps = 27/218 (12%)
Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
            PVP P   ++L++     +NA D     G   P +  K P+    +  GE++ +G    
Sbjct: 54  CPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSV--KPPFDIGFEGIGEVVALGLSAS 111
Query: 64  NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPL--------------------EVSX 103
              A Y V   + + + G  AE+ +V  S+    P                     E+  
Sbjct: 112 ---ARYTVGQAVAYMAPGSFAEYTVVPASIATPVPSVKPEYLTLLVSGTTAYISLKELGG 168
Query: 104 XXXXXXXXXXXXXXXXXXQSAGLAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKT-PD 161
                              +  L+K    HV  TC +     F+KSLG D  ++YKT P 
Sbjct: 169 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPV 228
Query: 162 GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVI 199
           G  LK       D V     G  +      LA  G++I
Sbjct: 229 GTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLI 266

>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product Length = 362

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 78/218 (35%), Gaps = 27/218 (12%)
Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
            PVP P   ++L++     +NA D     G   P +  K P+    +  GE++ +G    
Sbjct: 46  CPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSV--KPPFDIGFEGIGEVVALGLSAS 103
Query: 64  NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPL--------------------EVSX 103
              A Y V   + + + G  AE+ +V  S+    P                     E+  
Sbjct: 104 ---ARYTVGQAVAYMAPGSFAEYTVVPASIATPVPSVKPEYLTLLVSGTTAYISLKELGG 160
Query: 104 XXXXXXXXXXXXXXXXXXQSAGLAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKT-PD 161
                              +  L+K    HV  TC +     F+KSLG D  ++YKT P 
Sbjct: 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPV 220
Query: 162 GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVI 199
           G  LK       D V     G  +      LA  G++I
Sbjct: 221 GTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLI 258

>pdb|4DVJ|A Chain A, Crystal Structure Of A Putative Zinc-Dependent Alcohol Dehydrogenase Protein From Rhizobium Etli Cfn 42 Length = 363

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
           + +P P P   ++L++V+A S+N  D+K+++         K   +   D AG +  VG +
Sbjct: 43  IELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWK---VIGYDAAGIVSAVGPD 99
Query: 62  VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRP 98
           V  F+ G  V    +    G  AEF +V E +   +P
Sbjct: 100 VTLFRPGDEVFYAGSIIRPGTNAEFHLVDERIVGRKP 136

>pdb|3GOH|A Chain A, Crystal Structure Of Alcohol Dehydrogenase Superfamily Protein (np_718042.1) From Shewanella Oneidensis At 1.55 A Resolution Length = 315

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           V +P    D++L++ +A  +N  DWK  K  A PI      ++P  D AG I++VG++V 
Sbjct: 22  VDIPALAADDILVQNQAIGINPVDWKFIK--ANPI-NWSNGHVPGVDGAGVIVKVGAKVD 78
Query: 64  NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVS 102
           +   G  V    +    G  AEF ++      + P  +S
Sbjct: 79  SKXLGRRVAYHTSLKRHGSFAEFTVLNTDRVXTLPDNLS 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	280
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	4e-76
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	9e-72
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	2e-59
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	7e-57
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	6e-56
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	1e-55
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	1e-45
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	9e-42
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	1e-38
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	2e-37
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	6e-36
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	8e-36
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	7e-35
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	5e-33
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	5e-33
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	6e-33
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	2e-32
4eye_A	342	Probable oxidoreductase; structural genomics, niai	2e-31
3gms_A	340	Putative NADPH:quinone reductase; structural genom	8e-31
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	2e-29
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	3e-28
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	2e-27
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	4e-27
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	8e-24
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	8e-24
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	5e-22
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	1e-21
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	8e-21
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	1e-17
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	5e-17
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	9e-16
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	2e-15
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	1e-14
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	3e-14
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	2e-13
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	2e-13
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	4e-13
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	6e-13
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	7e-13
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	1e-12
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-12
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	3e-11
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	4e-10
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	4e-10
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	7e-09
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	2e-08
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	3e-06
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	7e-06
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	1e-05
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	4e-05
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	2e-04
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	3e-04
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	3e-04
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	4e-04
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	4e-04
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	5e-04
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	6e-04
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	7e-04
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	8e-04

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score =  235 bits (602), Expect = 4e-76
 Identities = 82/333 (24%), Positives = 135/333 (40%), Gaps = 58/333 (17%)

Query: 4   VPVPTPRK-DEVLLKVEASSLNAFDWKIKKGVARPILP------------RKFPYIPATD 50
           + +P     +EV++KV A+S+N  D  ++ G     L              +FP     D
Sbjct: 42  MMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRD 101

Query: 51  VAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLP 110
           V+G ++E G +VK FK G  V A +  +  G L+EF +V  +  + +P  ++  + A LP
Sbjct: 102 VSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLP 161

Query: 111 LAGLTALEALTQSAG--------------------------LAKLGNSHVTATCGARNIE 144
              LTA  A+ +  G                          + K  ++HVTA C     E
Sbjct: 162 YVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASE 221

Query: 145 FVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGK---VIDL 201
            V+ LGAD+V+DYK+      +  S + +D ++    G   +     L +      V  +
Sbjct: 222 LVRKLGADDVIDYKSGS-VEEQLKSLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLV 280

Query: 202 TPTPSAMLTFAWQK------LTFSKKQLVP---------LLVIPKGENLVFLVKLLKEGK 246
           TP    M             +T   K L              +  G  L  + +L+  GK
Sbjct: 281 TPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGK 340

Query: 247 IKTLIDSKHLLSKAEDAWAKGADGHATGKIILE 279
           I+ +I+     SK  +A+ K   GHA GK ++ 
Sbjct: 341 IRPVIEQTFPFSKVPEAFLKVERGHARGKTVIN 373

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score =  222 bits (568), Expect = 9e-72
 Identities = 84/300 (28%), Positives = 125/300 (41%), Gaps = 30/300 (10%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKG--VARPILPRKFPYIPATDVAGEIIEVGSE 61
            P P  RK+++L+KV A+SLN  D+K + G       L    P     D +GE+IE+GS+
Sbjct: 26  TPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGSD 85

Query: 62  VKNFKAGYNVVAILNHFS-GGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
           V N   G  V+ I          AE+          +  ++S  + A LP AGLTAL+AL
Sbjct: 86  VNNVNIGDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQAL 145

Query: 121 TQ---SAG------------------LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKT 159
            Q     G                  LAK   + V  T   RN  F+K+LGA++ ++Y  
Sbjct: 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHE 205

Query: 160 PDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFS 219
            D            DAVI    G         L E G ++ +    +  +    +     
Sbjct: 206 EDFLLA---ISTPVDAVIDLVGGDVGIQSIDCLKETGCIVSVPTITAGRV---IEVAKQK 259

Query: 220 KKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILE 279
            ++   LL     E L +L KL+ E K++  I     LS+A  A      GH  GK++ +
Sbjct: 260 HRRAFGLLKQFNIEELHYLGKLVSEDKLRIEISRIFQLSEAVTAHELLETGHVRGKLVFK 319

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score =  191 bits (488), Expect = 2e-59
 Identities = 75/314 (23%), Positives = 126/314 (40%), Gaps = 42/314 (13%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           +  P P   +VL+++EAS  N  D KI+ G A P   +  P I   D+AG ++ VG EV 
Sbjct: 25  LARPQPAPGQVLVQIEASGTNPLDAKIRAGEA-PHAQQPLPAILGMDLAGTVVAVGPEVD 83

Query: 64  NFKAGYNVVAILNHFSG--GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT 121
           +F+ G  V  +     G  G  A+FA V   L AS+P  ++  + + LPL  +TA E L 
Sbjct: 84  SFRVGDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLV 143

Query: 122 QSAG----------------------LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKT 159
             A                       +A    + V AT    ++E+V+ LGA  +   + 
Sbjct: 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFATARGSDLEYVRDLGATPIDASRE 203

Query: 160 PDGAALKSPSGRKYDAVIHCARGIPWSTFEPN---LAENGKVIDLTPTPSAMLTFAWQK- 215
           P+  A +  +G+ +D V     G      + +   +   G V+      +  L     K 
Sbjct: 204 PEDYAAEHTAGQGFDLVYDTLGG---PVLDASFSAVKRFGHVVSCLGWGTHKLAPLSFKQ 260

Query: 216 --LTFSKK---QLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHL-LSKAEDAWA---- 265
              +        L    +   GE L     L++ GK+   +D +   +++   A+     
Sbjct: 261 ATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLAPRLDPRTFSIAEIGSAYDAVLG 320

Query: 266 KGADGHATGKIILE 279
           +       GKI + 
Sbjct: 321 RNDVPRQRGKIAIT 334

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score =  183 bits (468), Expect = 7e-57
 Identities = 52/303 (17%), Positives = 98/303 (32%), Gaps = 39/303 (12%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           V +P    D++L++ +A  +N  DWK  K      +     ++P  D AG I++VG++V 
Sbjct: 22  VDIPALAADDILVQNQAIGINPVDWKFIKANP---INWSNGHVPGVDGAGVIVKVGAKVD 78

Query: 64  NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT-- 121
           +   G  V    +    G  AEF ++      + P  +S    A LP   LTA +A    
Sbjct: 79  SKMLGRRVAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAFEKI 138

Query: 122 -----QS-----AG--------LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPDGA 163
                +       G        +       V     + +       G   +    +    
Sbjct: 139 PLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVSASLSQALAAKRGVRHLYREPSQV-- 196

Query: 164 ALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVI--------DLTPTPSAMLTFAWQK 215
                  +KY A+         +   P+L  NG +I         + P  +  +++    
Sbjct: 197 ------TQKYFAIFDAVNSQNAAALVPSLKANGHIICIQDRIPAPIDPAFTRTISYHEIA 250

Query: 216 LTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGK 275
           L                +    L+ L+ +GK++          +  +A            
Sbjct: 251 LGALHDFGDRQDWQILMQQGEALLTLIAQGKMEIAAPDIFRFEQMIEALDHSEQTKLKTV 310

Query: 276 IIL 278
           + L
Sbjct: 311 LTL 313

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score =  182 bits (465), Expect = 6e-56
 Identities = 71/317 (22%), Positives = 124/317 (39%), Gaps = 45/317 (14%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           +P P P   ++L++V+A S+N  D+K+++             +   D AG +  VG +V 
Sbjct: 45  LPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTD---WKVIGYDAAGIVSAVGPDVT 101

Query: 64  NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS 123
            F+ G  V    +    G  AEF +V E +   +P  +  AE A LPL  +TA EA    
Sbjct: 102 LFRPGDEVFYAGSIIRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDR 161

Query: 124 AG---------------------------LAK-LGNSHVTATC-GARNIEFVKSLGADEV 154
                                        +A+   +  V AT       E+VKSLGA  V
Sbjct: 162 LDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHV 221

Query: 155 LDYKTPDGAALKSPSGRKYDAVIHCARGIP-WSTFEPNLAENGKVI--------DLTPTP 205
           +D+  P  A + +        V          +     +A  G+          D+    
Sbjct: 222 IDHSKPLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDDPSAFDIMLFK 281

Query: 206 SAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAED--- 262
              ++   + L F++       +  +G  L  + +L+ EG+++T + ++     A +   
Sbjct: 282 RKAVSIHHE-LMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRTTLTNRLSPINAANLKQ 340

Query: 263 AWAKGADGHATGKIILE 279
           A A    G A GK+++E
Sbjct: 341 AHALVESGTARGKVVIE 357

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score =  181 bits (462), Expect = 1e-55
 Identities = 65/319 (20%), Positives = 112/319 (35%), Gaps = 50/319 (15%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           + +P P+  E+L+K+++ S+N  D K +          K P +   D  G +  VG+EV 
Sbjct: 25  LDIPEPKVHEILVKIQSISVNPVDTKQRLM-----DVSKAPRVLGFDAIGVVESVGNEVT 79

Query: 64  NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS 123
            F  G  V    +    G  AE+ ++ E L A  P  +SA +   LPL G+TA E L   
Sbjct: 80  MFNQGDIVYYSGSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDV 139

Query: 124 AG----------------------------LAKLGNSHVTATC-GARNIEFVKSLGADEV 154
            G                            +AK     V  T      IE+ K +GAD V
Sbjct: 140 FGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIV 199

Query: 155 LDYKTPDGAALKSPSGRKYDAVIHCARG-IPWSTFEPNLAENGKVIDLTPTPSAM----- 208
           L++K       K+      D V       + +      +   G +  +    +       
Sbjct: 200 LNHKESLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAFENDQDLNAL 259

Query: 209 ----LTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHL----LSKA 260
               L+F+ +   F++       +I   E L  +   +++   +     K +        
Sbjct: 260 KPKSLSFSHE-FMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQPTTT-KVIEGLTTENI 317

Query: 261 EDAWAKGADGHATGKIILE 279
             A          GK+++ 
Sbjct: 318 YQAHQILESNTMIGKLVIN 336

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score =  156 bits (396), Expect = 1e-45
 Identities = 60/339 (17%), Positives = 110/339 (32%), Gaps = 71/339 (20%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
            P P   +D+V ++VEA ++N  D  ++   A P           TD AG ++ VGS+V 
Sbjct: 29  APCPMLPRDQVYVRVEAVAINPSDTSMRGQFATP------WAFLGTDYAGTVVAVGSDVT 82

Query: 64  NFKAGYNVVAILNHFSG-----GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALE 118
           + + G  V    N         G  +++ + +  + A  P  +S  + A LP    TA  
Sbjct: 83  HIQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGL 142

Query: 119 ALTQ-----------------------------SAG-----LAKLGNSHVTATCGARNIE 144
           A+                               +       + +L      ATC   N +
Sbjct: 143 AMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFD 202

Query: 145 FVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLA----ENGKVI 199
             KS GA+EV DY+ P+    +++ +       + C       +     A      G  +
Sbjct: 203 LAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITN--VESTTFCFAAIGRAGGHYV 260

Query: 200 DLTPTPSAMLTFAWQKLTFS--------KKQLVPLLVIPKGENLV--------FLVKLLK 243
            L P P    T       ++                  P  E              +L++
Sbjct: 261 SLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVE 320

Query: 244 EGKIKTLIDS--KHLLSKAEDAWAKGADGHATG-KIILE 279
           +G++        +      +        G  +G K+++ 
Sbjct: 321 DGRLVHHPLRVVQGGFDHIKQGMELVRKGELSGEKLVVR 359

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  145 bits (369), Expect = 9e-42
 Identities = 75/328 (22%), Positives = 130/328 (39%), Gaps = 58/328 (17%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           +PVP P   EV ++++A++LN  D  ++KGVA P      P++   D +G +  VG  V+
Sbjct: 20  LPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASP--KLPLPHVLGADGSGVVDAVGPGVE 77

Query: 64  NFKAGYNVVAILNHF------------------------SGGGLAEFAMVKESLTASRPL 99
            F  G  VV                                G  AE+ ++ E+  A +P 
Sbjct: 78  GFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPK 137

Query: 100 EVSAAEGAGLPLAGLTALEALTQSAGL----------------------AKLGNSHVTAT 137
            +S  E A +PL  LTA + +    G+                      AKL  + V AT
Sbjct: 138 NLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIAT 197

Query: 138 CG-ARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPN--- 191
            G    +   K+LGADE ++Y  PD      +   G+  D V+          FE     
Sbjct: 198 AGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTGA---LYFEGVIKA 254

Query: 192 LAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLI 251
            A  G++     +     T  +  + + +  ++   +  K   L  +++ ++EGK+K ++
Sbjct: 255 TANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMASK-SRLFPILRFVEEGKLKPVV 313

Query: 252 DSKHLLSKAEDAWAKGADGHATGKIILE 279
                L  A +      +    GK++L+
Sbjct: 314 GQVLPLEAAAEGHRLLEERRVFGKVVLQ 341

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  137 bits (348), Expect = 1e-38
 Identities = 69/330 (20%), Positives = 122/330 (36%), Gaps = 67/330 (20%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
            PVP   + +++++  A SLN  D  + +      L   FP++PA+D++G +  VG  V 
Sbjct: 46  RPVPEAGEHDIIVRTLAVSLNYRDKLVLET--GMGLDLAFPFVPASDMSGVVEAVGKSVT 103

Query: 64  NFKAGYNVVAIL--NHFSG-------------------GGLAEFAMVKESLTASRPLEVS 102
            F+ G  V++        G                   G L+E+ ++ E    + P  + 
Sbjct: 104 RFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLD 163

Query: 103 AAEGAGLPLAGLTALEALTQSAGL---------------------AKLGNSHVTATCG-A 140
           AAE + LP AGLTA  AL +   L                     AK   + V  T    
Sbjct: 164 AAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSR 223

Query: 141 RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNL---AEN 195
             ++   +LGAD  ++    D           R  D ++  A G   +    +L   A +
Sbjct: 224 EKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAGG---AGLGQSLKAVAPD 280

Query: 196 GKVI------DLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT 249
           G++           +                  +  + V  +   L  LV  +    +K 
Sbjct: 281 GRISVIGVLEGFEVSGPVGPLL------LKSPVVQGISVGHR-RALEDLVGAVDRLGLKP 333

Query: 250 LIDSKHLLSKAEDAWAKGADGHATGKIILE 279
           +ID ++  ++  +A A    G   GK+++E
Sbjct: 334 VIDMRYKFTEVPEALAHLDRGP-FGKVVIE 362

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score =  136 bits (345), Expect = 2e-37
 Identities = 65/358 (18%), Positives = 112/358 (31%), Gaps = 84/358 (23%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPIL---------------PRKFPYIPA 48
           VP+P    DEVL+ V ASS+N            P                   +  ++  
Sbjct: 55  VPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATRHDQPYHVLG 114

Query: 49  TDVAGEIIEVGSEVKNFKAGYNVVAILNHFSG------------------------GGLA 84
           +D +G ++  G  V+ +K G +V+    H                           GGLA
Sbjct: 115 SDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLA 174

Query: 85  EFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG------------------- 125
           E+ +V+ S    +P  ++  E A  PL   TA   L    G                   
Sbjct: 175 EYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLG 234

Query: 126 -----LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPD------------------ 161
                  K G     A    A+    V++LG D V++                       
Sbjct: 235 SYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRK 294

Query: 162 -GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSK 220
               +   +GR+ D V      + +          G V+    +   + TF  + L    
Sbjct: 295 LAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSSSGYLHTFDNRYLWMKL 354

Query: 221 KQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL 278
           K++V        E      +L + G +   + + + L++A +A          GK+ +
Sbjct: 355 KKIVGSHG-ANHEEQQATNRLFESGAVVPAMSAVYPLAEAAEACRVVQTSRQVGKVAV 411

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score =  130 bits (329), Expect = 6e-36
 Identities = 74/323 (22%), Positives = 121/323 (37%), Gaps = 65/323 (20%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
            P+P   + EVL++ EA  +N  D   ++G   P  P+    I   +++GEI+ VG  V 
Sbjct: 48  RPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPP--PKDASPILGLELSGEIVGVGPGVS 105

Query: 64  NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS 123
            +  G  V  + N   GG  AE+ ++        P    A + A LP    T    L Q 
Sbjct: 106 GYAVGDKVCGLAN---GGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQM 162

Query: 124 AGL----------------------AKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTP 160
           AGL                      A+   + V AT G     E  + LGA   ++Y++ 
Sbjct: 163 AGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSE 222

Query: 161 D-GAALKSPSGRKYDAVIHCARGIPWSTFEPN---LAENGKVIDL--------TPTPSAM 208
           D  A +K+ +G+  D ++        + FE N   LA++G +  +             + 
Sbjct: 223 DFAAVIKAETGQGVDIILDMIGA---AYFERNIASLAKDGCLSIIAFLGGAVAEKVNLSP 279

Query: 209 LTFAWQKLTFS---------KKQLVPLL---VIPKGENLVFLVKLLKEGKIKTLIDSKHL 256
           +      +T S         K+ +   L   V P          LL+ G +  +I     
Sbjct: 280 IMVKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWP----------LLEAGTVAPVIHKVFA 329

Query: 257 LSKAEDAWAKGADGHATGKIILE 279
                DA     +G   GK++L 
Sbjct: 330 FEDVADAHRLLEEGSHVGKVMLT 352

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score =  130 bits (328), Expect = 8e-36
 Identities = 66/329 (20%), Positives = 116/329 (35%), Gaps = 61/329 (18%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
             +P P+  E+ ++V+A  LN  D  +++G      P K P +P  + +G +  +G  VK
Sbjct: 23  KAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDN--PPKTPLVPGFECSGIVEALGDSVK 80

Query: 64  NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS 123
            ++ G  V+A +N       AE            P ++S +E A  P+  +TA   L + 
Sbjct: 81  GYEIGDRVMAFVN---YNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEV 137

Query: 124 AGLAK-----------------------LGNSHVTATCGARNIEFVKSLGADEVLDYKTP 160
           A L +                       + N  V  T      E +K      + D    
Sbjct: 138 ANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKD-SVTHLFDRNAD 196

Query: 161 DGAALKSPSGRKYDAVIHCARGIPWSTFEPN---LAENGKVIDL----TPTPSAMLTFAW 213
               +K  S    D V+ C  G            L   G  I        T      F++
Sbjct: 197 YVQEVKRISAEGVDIVLDCLCG---DNTGKGLSLLKPLGTYILYGSSNMVTGETKSFFSF 253

Query: 214 QKLTFSKKQLVPLLVIPKG----------------------ENLVFLVKLLKEGKIKTLI 251
            K  +  +++ P+ +  +                         +  L+ L  + KIK ++
Sbjct: 254 AKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKPVV 313

Query: 252 DSKHLLSKAEDAWAKGADGHATGKIILEP 280
           DS   L + ++A  +  D    GK+IL+ 
Sbjct: 314 DSLWALEEVKEAMQRIHDRGNIGKLILDV 342

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score =  127 bits (322), Expect = 7e-35
 Identities = 69/307 (22%), Positives = 110/307 (35%), Gaps = 39/307 (12%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           + VP P+  +VL+KV A  +N  +  I+ G          PY P +DVAG I  VG    
Sbjct: 50  IAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSR--KPLLPYTPGSDVAGVIEAVGDNAS 107

Query: 64  NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS 123
            FK G  V         GG AE+A+  +      P ++   +GA + +   TA  AL  S
Sbjct: 108 AFKKGDRVFTSST--ISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHS 165

Query: 124 AGL----------------------AKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTP 160
           A +                      A+     +  T G     + V   GA EV +++  
Sbjct: 166 ACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREV 225

Query: 161 DGAA--LKSPSGRKYDAVIHCARGIPWSTFEPN---LAENGKVI---DLTPTPSAMLTFA 212
           +      K    +  D +I             +   L+  G+VI                
Sbjct: 226 NYIDKIKKYVGEKGIDIIIEMLAN---VNLSKDLSLLSHGGRVIVVGSRGTIEINPRDTM 282

Query: 213 WQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKG-ADGH 271
            ++ +     L         +    L   ++ G +K +I S++ L K  +A         
Sbjct: 283 AKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKPVIGSQYPLEKVAEAHENIIHGSG 342

Query: 272 ATGKIIL 278
           ATGK+IL
Sbjct: 343 ATGKMIL 349

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score =  122 bits (309), Expect = 5e-33
 Identities = 60/321 (18%), Positives = 100/321 (31%), Gaps = 57/321 (17%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           + VP P   +VL+KV  +S+N  D    KG      PR        +  G I+  G E  
Sbjct: 42  IAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQ--PRVKGRPAGFEGVGTIVAGGDEPY 99

Query: 64  -NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTAL----- 117
                G  V       + G  AE+A+ + +        V   +GA + +  LTA+     
Sbjct: 100 AKSLVGKRVAFATGLSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDI 159

Query: 118 ------EALTQSAG----------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTP 160
                 +A   +AG          LAK        T      I  +K +GA  VL+ K P
Sbjct: 160 VKQEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAP 219

Query: 161 D-GAALKSPS-GRKYDAVIHCARGIPWSTFEPN---LAENG----------KVIDLTPTP 205
           D  A L+      +    +    G            + +                +    
Sbjct: 220 DFEATLREVMKAEQPRIFLDAVTG---PLASAIFNAMPKRARWIIYGRLDPDATVIREPG 276

Query: 206 SAMLT------FAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSK 259
             +        F   +     K+         G  ++   K   +G+  T + +   L++
Sbjct: 277 QLIFQHKHIEGFWLSEWMRQFKERR-------GPAILEAQKRFSDGRWSTDVTAVVPLAE 329

Query: 260 AEDAWAKGADGHATGKIILEP 280
           A             GK+ + P
Sbjct: 330 AIAWVPAELTKP-NGKVFIRP 349

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score =  122 bits (309), Expect = 5e-33
 Identities = 54/329 (16%), Positives = 101/329 (30%), Gaps = 70/329 (21%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGV--ARPILPRKFPYIPATDVAGEIIEVG 59
            ++ +   R  +V +K+ A+ +N  D  + +G     P    + P +   +   +++ VG
Sbjct: 45  KNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLP----ELPAVGGNEGVAQVVAVG 100

Query: 60  SEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEA 119
           S V   K G  V+        G     A+  E      P ++     A L +   TA   
Sbjct: 101 SNVTGLKPGDWVIPANAGL--GTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRM 158

Query: 120 LTQSAGL----------------------AKLGNSHVTATCGARN-----IEFVKSLGAD 152
           L     L                      A             R       + +KSLGA+
Sbjct: 159 LMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAE 218

Query: 153 EVLDYKTPDGAALKS--PSGRKYDAVIHCARGIPWSTFEPN---LAENGKVI-------D 200
            V+  +      +K+      +    ++C  G    +       LA  G ++        
Sbjct: 219 HVITEEELRRPEMKNFFKDMPQPRLALNCVGG---KSSTELLRQLARGGTMVTYGGMAKQ 275

Query: 201 LTPTPSAMLTF-----------AWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT 249
                 ++L F            W+K     +           E ++ L  L++ G++  
Sbjct: 276 PVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQ---------FKELILTLCDLIRRGQLTA 326

Query: 250 LIDSKHLLSKAEDAWAKGADGHATGKIIL 278
              S+  L   + A         + K IL
Sbjct: 327 PACSQVPLQDYQSALEASMKPFISSKQIL 355

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score =  122 bits (309), Expect = 6e-33
 Identities = 75/322 (23%), Positives = 129/322 (40%), Gaps = 58/322 (18%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           V  P+P + EVLLKV AS+LN  D   ++G   P  P     I   + +G + E+G   +
Sbjct: 42  VAKPSPGEGEVLLKVAASALNRADLMQRQGQYDP--PPGASNILGLEASGHVAELGPGCQ 99

Query: 64  -NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQ 122
            ++K G   +A+L    GGG A++  V E L    P  ++  + A +P A LTA + L  
Sbjct: 100 GHWKIGDTAMALLP---GGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHL 156

Query: 123 SAGL----------------------AKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKT 159
              +                       ++  +    T G  + ++  + LGA    +YK 
Sbjct: 157 VGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKK 216

Query: 160 PDGAA--LKSPSGRKYDAVIHCARGIPWSTFEPN---LAENGKVI--------DLTPTPS 206
            D +   LK   G   + ++ C  G   S +E N   LA +G+ +        D+     
Sbjct: 217 EDFSEATLKFTKGAGVNLILDCIGG---SYWEKNVNCLALDGRWVLYGLMGGGDINGPLF 273

Query: 207 AMLTFAWQKLTFS---------KKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLL 257
           + L F    L  S         K+ LV        E ++         ++  ++D  + +
Sbjct: 274 SKLLFKRGSLITSLLRSRDNKYKQMLVNAFT----EQILPHFSTEGPQRLLPVLDRIYPV 329

Query: 258 SKAEDAWAKGADGHATGKIILE 279
           ++ ++A          GKI+LE
Sbjct: 330 TEIQEAHKYMEANKNIGKIVLE 351

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  122 bits (309), Expect = 2e-32
 Identities = 65/361 (18%), Positives = 105/361 (29%), Gaps = 90/361 (24%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPR--------------KFPY-IPA 48
           VPVP     E L+ V ASS+N                                 PY +  
Sbjct: 63  VPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHDLPYHVIG 122

Query: 49  TDVAGEIIEVGSEVKNFKAGYNVVAILNHFSG------------------------GGLA 84
           +D+AG ++  G  V  ++AG  VVA                               GGLA
Sbjct: 123 SDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLA 182

Query: 85  EFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG------------------- 125
           E A+VK +    +P  +S  E A   L   TA   L    G                   
Sbjct: 183 EIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLG 242

Query: 126 -----LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPS---------- 169
                 A  G ++        +  E  +++GA+ ++D         K  +          
Sbjct: 243 SYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRF 302

Query: 170 ---------GRKYDAVIHCARGIPWSTFEPNL---AENGKVIDLTPTPSAMLTFAWQKLT 217
                    G   D V          TF  ++    + G +     T   M  +  + L 
Sbjct: 303 GKRIRELTGGEDIDIVFEHPGR---ETFGASVFVTRKGGTITTCASTSGYMHEYDNRYLW 359

Query: 218 FSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKII 277
            S K+++               +L+ +G+I   +   + L     A          GK+ 
Sbjct: 360 MSLKRIIGSHFANY-REAWEANRLIAKGRIHPTLSKVYSLEDTGQAAYDVHRNLHQGKVG 418

Query: 278 L 278
           +
Sbjct: 419 V 419

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score =  118 bits (298), Expect = 2e-31
 Identities = 72/323 (22%), Positives = 113/323 (34%), Gaps = 67/323 (20%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           V  P    + V++ V+A+ +   D+ + KG  +     + P++P  + AG +     E  
Sbjct: 41  VETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQL--KMEPPFVPGIETAGVVRSAP-EGS 97

Query: 64  NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS 123
             K G  V+A       GG AE   V  S     P ++  AE   L     T   A  + 
Sbjct: 98  GIKPGDRVMAFN---FIGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARR 154

Query: 124 AGL----------------------AKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTP 160
             L                      AK   + V A        EFVKS+GAD VL  +  
Sbjct: 155 GQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEG 214

Query: 161 DGAALKSPSGRK-----YDAVIHCARGIPWSTFEPNL---AENGK--VIDLT----PTPS 206
              A++  +G        D +     G     F+  +   A  G+  V+       PT  
Sbjct: 215 WAKAVREATGGAGVDMVVDPI-----G--GPAFDDAVRTLASEGRLLVVGFAAGGIPTIK 267

Query: 207 AMLT---------FAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLL 257
                         AW +   +    +        E    L KL+ EG ++  + ++  L
Sbjct: 268 VNRLLLRNASLIGVAWGEFLRTHADYLY-------ETQAGLEKLVAEG-MRPPVSARIPL 319

Query: 258 SKAEDAWAKGADGHATGKIILEP 280
           S+   A    ADG   GK++L P
Sbjct: 320 SEGRQALQDFADGKVYGKMVLVP 342

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score =  116 bits (293), Expect = 8e-31
 Identities = 49/320 (15%), Positives = 96/320 (30%), Gaps = 56/320 (17%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
             +   + +EV +++    +N  D     G          P IP  +  G +  VG+ V 
Sbjct: 25  KNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAH--RIPLPNIPGYEGVGIVENVGAFVS 82

Query: 64  NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS 123
               G  V+ +      G   E+           P  +     A + +  LTA    T++
Sbjct: 83  RELIGKRVLPLR---GEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTET 139

Query: 124 AGL----------------------AKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTP 160
             L                      +++ N  + A     ++ E +  LGA  V+D  T 
Sbjct: 140 LNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTA 199

Query: 161 DGAA--LKSPSGRKYDAVIHCARGIPWSTFEPNL-------------AENGKVIDLTPT- 204
                 ++  +G   DA I    G                         +G  ++     
Sbjct: 200 PLYETVMELTNGIGADAAIDSIGG---PDGNELAFSLRPNGHFLTIGLLSGIQVNWAEIV 256

Query: 205 --PSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTL-IDSKHLLSKAE 261
                        L     ++ P       E    L++L++  +++ + + S + L+  +
Sbjct: 257 TKAKVHANIFH--LRHWNDEVSPYKW---QETFRHLIRLVENEQLRFMKVHSTYELADVK 311

Query: 262 DAWAKGADG-HATGKIILEP 280
            A           GK+ L  
Sbjct: 312 AAVDVVQSAEKTKGKVFLTS 331

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score =  113 bits (285), Expect = 2e-29
 Identities = 71/324 (21%), Positives = 109/324 (33%), Gaps = 58/324 (17%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
            PVP P   ++L++     +NA D     G   P    K P+    +  GE++ +G    
Sbjct: 46  CPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDP--SVKPPFDIGFEGIGEVVALGLSAS 103

Query: 64  NFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS 123
                   VA +   + G  AE+ +V  S+    P+     E   L ++G TA  +L + 
Sbjct: 104 ARYTVGQAVAYM---APGSFAEYTVVPASIA--TPVPSVKPEYLTLLVSGTTAYISLKEL 158

Query: 124 AG----------------------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTP 160
            G                      L+K    HV  TC       F+KSLG D  ++YKT 
Sbjct: 159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTE 218

Query: 161 D-GAALKSPSGRKYDAVIHCARGIPWSTFEPN---LAENGKVI---------DLTPTPSA 207
             G  LK       D V     G   + F+     LA  G++I           T     
Sbjct: 219 PVGTVLKQEYPEGVDVVYESVGG---AMFDLAVDALATKGRLIVIGFISGYQTPTGLSPV 275

Query: 208 MLTFAWQKLTFSKKQLVPLLVIP----KGENLVFLVKLLKEGKIKTLIDSKHL------- 256
                  KL      +    +          +  L+++   G +   +D   L       
Sbjct: 276 KAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFT 335

Query: 257 -LSKAEDAWAKGADGHATGKIILE 279
            L     A      G  TGKI++E
Sbjct: 336 GLESIFRAVNYMYMGKNTGKIVVE 359

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score =  110 bits (276), Expect = 3e-28
 Identities = 60/349 (17%), Positives = 112/349 (32%), Gaps = 86/349 (24%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGV--ARPILP-----RKFPYIPATDVAGEII 56
           +       +EV++K   S +N  D    +GV  ++P         +       +   E+I
Sbjct: 26  IDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVI 85

Query: 57  EVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKES-----------LTASRPLEVSAAE 105
           +VGS V + +AG  V+    +F  G     A+  +                +P  ++  +
Sbjct: 86  KVGSNVSSLEAGDWVIPSHVNF--GTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQ 143

Query: 106 GAGLPLAGLTALEALTQSAGL-----------------------AKLGNSHVTATCGARN 142
           GA + +  LTA   LT    L                        KL N +  +    R 
Sbjct: 144 GATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRP 203

Query: 143 -----IEFVKSLGADEVLDYKTPDGAALKS-------PSGRKYDAVIHCARGIPWSTFEP 190
                +  +K LGA +V+     +              SG +    ++C  G    +   
Sbjct: 204 NLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGG---KSSTG 260

Query: 191 N---LAENGKVI-------DLTPTPSAMLT--------FAWQKLTFSKKQLVPLLVIPKG 232
               L  NG ++            P+++          F   +L  + K+L       K 
Sbjct: 261 IARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKEL-------KT 313

Query: 233 ENLVFLVKLLKEGKIKTLIDSKHLLS---KAEDAWAKGADGHATGKIIL 278
             L  ++   +EGK+      + L        + +  G      GK ++
Sbjct: 314 STLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLI 362

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score =  107 bits (269), Expect = 2e-27
 Identities = 64/318 (20%), Positives = 102/318 (32%), Gaps = 44/318 (13%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
             V V +P   +V L+  A  +N  D   + G+  P++  + P +   + A  + EVG  
Sbjct: 19  EEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPG 78

Query: 62  VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSA--AEGAGLPLAGLTALEA 119
           V +F  G  V   L     G  ++  +         P ++       AGL L G+TA   
Sbjct: 79  VTDFTVGERVCTCLP--PLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYL 136

Query: 120 LTQS--------------AG--------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLD 156
           L Q+              AG         A+   + V  T       E  + LG    ++
Sbjct: 137 LHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTIN 196

Query: 157 YKTPDGAA--LKSPSGRKYDAVIHCARGIPWSTFEPN---LAENGKVI-------DLTPT 204
           Y T D A    +   G+  D V      I   T + +   L   G             P 
Sbjct: 197 YSTQDFAEVVREITGGKGVDVVYD---SIGKDTLQKSLDCLRPRGMCAAYGHASGVADPI 253

Query: 205 PSAMLTFAWQKLTFSKKQLVPLLVIPK--GENLVFLVKLLKEGKIKTLIDSKHLLSKAED 262
                      L  ++  L   +       E    L   +K G + + +     L +A  
Sbjct: 254 RVVEDLGVRGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAGVLHSSVAKTFPLREAAA 313

Query: 263 AWAKGADGHATGKIILEP 280
           A          G I+L P
Sbjct: 314 AHKYMGGRQTIGSIVLLP 331

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  106 bits (267), Expect = 4e-27
 Identities = 79/334 (23%), Positives = 128/334 (38%), Gaps = 61/334 (18%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKG-----VARPILPRKFPYIPATDVAGEIIEV 58
           + VP P+  +VL+KVEA+ +   D  +++G          L  K P     ++AG+I EV
Sbjct: 18  IGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEV 77

Query: 59  GSEVKNFKAGYNVVAILNHFSG------------------------GGLAEFAMVKESLT 94
           G EV  +  G  V        G                        G  AE+ +V     
Sbjct: 78  GDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKY 137

Query: 95  ASRPLEVSAAEGAGLPLAGLTALEALTQSA--------------GLAKLGNSHVTATCGA 140
             +   ++A E A L  +G+T   A+ +++              GL  +      A  GA
Sbjct: 138 MYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA 197

Query: 141 RNI---------EFVKSLGADEVLDYKTPDGAA--LKSPSGRKYDAVIHCARGIPWSTFE 189
             I         E  K  GAD V++    D  A   +    +  DAVI         T  
Sbjct: 198 TIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLN-NSE-KTLS 255

Query: 190 P---NLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGK 246
                LA+ GK + +     A L +    +T S+ Q V  LV  + +  + +++L + GK
Sbjct: 256 VYPKALAKQGKYV-MVGLFGADLHYHAPLITLSEIQFVGSLVGNQSD-FLGIMRLAEAGK 313

Query: 247 IKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP 280
           +K +I     L +A +A     +  A G+ +L P
Sbjct: 314 VKPMITKTMKLEEANEAIDNLENFKAIGRQVLIP 347

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 97.3 bits (243), Expect = 8e-24
 Identities = 71/316 (22%), Positives = 109/316 (34%), Gaps = 46/316 (14%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
           V      P    V+++ +A  LN  D   + G+  P      P     + AG +  VG E
Sbjct: 19  VDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGL-YPAPF--LPSGLGAEGAGVVEAVGDE 75

Query: 62  VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT 121
           V  FK G  V         G  +E  ++ E+        VS  + A L L GLT    L 
Sbjct: 76  VTRFKVGDRVAYGTG--PLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLR 133

Query: 122 QS--------------AG--------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYK 158
           Q+              AG         AK   + +  T          K+LGA E +DY 
Sbjct: 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYS 193

Query: 159 TPDGAA--LKSPSGRKYDAVIHCARGIPWSTFEPN---LAENGKVI-------DLTPTPS 206
             D A   L+   G+K   V     G+   T+  +   +A  G V+        ++    
Sbjct: 194 HEDVAKRVLELTDGKKCPVVYD---GVGQDTWLTSLDSVAPRGLVVSFGNASGPVSGVNL 250

Query: 207 AMLTFAWQKLTFSKKQLVPLLVIPK--GENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAW 264
            +L      +  ++  L       +        L  +L  GK+K     ++ L  A  A 
Sbjct: 251 GIL-AQKDSVYVTRPTLGSYANNAQNLQTMADELFDMLASGKLKVDGIEQYALKDAAKAQ 309

Query: 265 AKGADGHATGKIILEP 280
            + +    TG  IL P
Sbjct: 310 IELSARRTTGSTILIP 325

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 97.7 bits (244), Expect = 8e-24
 Identities = 64/317 (20%), Positives = 116/317 (36%), Gaps = 50/317 (15%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
              PVP+  ++E+L+K + + +N  +   +KG+     P + PY+   + +G ++  G  
Sbjct: 26  EDYPVPSISEEELLIKNKYTGVNYIESYFRKGIY----PCEKPYVLGREASGTVVAKGKG 81

Query: 62  VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASR-PLEVS---AAEGAGLPLAGLTAL 117
           V NF+ G  V     + S    A+++ +       + P   S       A   L  LTAL
Sbjct: 82  VTNFEVGDQVA----YISNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTAL 137

Query: 118 EALTQS--------------AG--------LAKLGNSHVTATCG-ARNIEFVKSLGADEV 154
               ++              AG        L K+  +H  A       ++  K  GA+ +
Sbjct: 138 SFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYL 197

Query: 155 LDYKTPDGAA--LKSPSGRKYDAVIHCARGIPWSTFEPNL---AENGKVIDL-----TPT 204
           ++    D     LK  +G+  DA       +   TFE +L      G  +          
Sbjct: 198 INASKEDILRQVLKFTNGKGVDASFD---SVGKDTFEISLAALKRKGVFVSFGNASGLIP 254

Query: 205 PSAMLTFAWQKLTFSKKQLVPLLVIPK--GENLVFLVKLLKEGKIKTLIDSKHLLSKAED 262
           P ++   + + +T  + QL   +  P+           L+   K+   I   + L     
Sbjct: 255 PFSITRLSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIKIYKTYPLRDYRT 314

Query: 263 AWAKGADGHATGKIILE 279
           A A        GK++LE
Sbjct: 315 AAADIESRKTVGKLVLE 331

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 92.2 bits (230), Expect = 5e-22
 Identities = 69/317 (21%), Positives = 109/317 (34%), Gaps = 70/317 (22%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
           V +P P   + EV+L+VEA  LN  D  ++ G          P+IP  +V G +   G  
Sbjct: 16  VDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLT--RLHPPFIPGMEVVGVV--EGRR 71

Query: 62  VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT 121
                      A++     GGLAE   V +      P  +S  E A  P++ LTA  AL 
Sbjct: 72  Y---------AALVP---QGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALK 119

Query: 122 Q---SAG------------------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKT 159
           +     G                  +A+     V A       +    +LGA+E   Y  
Sbjct: 120 RAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAE 179

Query: 160 PDGAALKSPSGRKYDAVIHCARGIPWSTFEPN---LAENGK--VIDLT----PTPSAMLT 210
               A    +    D ++   RG      E +   LA  G+   I            +  
Sbjct: 180 VPERAK---AWGGLD-LVLEVRG---KEVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRL 232

Query: 211 FA--------WQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAED 262
                     W      +  LV        E L FL+  L   +++ ++      ++AE 
Sbjct: 233 MRRNLAVLGFWLTPLLREGALV-------EEALGFLLPRL-GRELRPVVGPVFPFAEAEA 284

Query: 263 AWAKGADGHATGKIILE 279
           A+    D   TGK+++ 
Sbjct: 285 AFRALLDRGHTGKVVVR 301

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 91.5 bits (228), Expect = 1e-21
 Identities = 68/318 (21%), Positives = 115/318 (36%), Gaps = 48/318 (15%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
           V      P ++E+ ++ +A  +N  D  I+ G+  P      P    T+ AG + +VGS 
Sbjct: 19  VEFTPADPAENEIQVENKAIGINFIDTYIRSGL-YPP--PSLPSGLGTEAAGIVSKVGSG 75

Query: 62  VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT 121
           VK+ KAG  VV   +  + G  +    +     A  P  +S  + A   L GLT    L 
Sbjct: 76  VKHIKAGDRVVYAQS--ALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLR 133

Query: 122 QS--------------AG--------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYK 158
           ++              AG         AK   + +  T G A+  +     GA +V++Y+
Sbjct: 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYR 193

Query: 159 TPDGAA--LKSPSGRKYDAVIHCARGIPWSTFEPN---LAENGKVI-------DLTPTPS 206
             D      +   G+K   V      +   T+E +   L   G ++        +T    
Sbjct: 194 EEDLVERLKEITGGKKVRVVYD---SVGRDTWERSLDCLQRRGLMVSFGNSSGAVTGVNL 250

Query: 207 AMLTFAWQKLTFSKKQLVPLLVIPK--GENLVFLVKLLKEGKIKTLIDSKHL--LSKAED 262
            +L      L  ++  L   +   +   E    L  L+  G IK  +  +    L  A+ 
Sbjct: 251 GILNQK-GSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKYPLKDAQR 309

Query: 263 AWAKGADGHATGKIILEP 280
           A          G  +L P
Sbjct: 310 AHEILESRATQGSSLLIP 327

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 90.0 bits (223), Expect = 8e-21
 Identities = 61/356 (17%), Positives = 101/356 (28%), Gaps = 82/356 (23%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVA------------RPILPRKFPYIPAT 49
             +  P P  DEVL+++EAS LN  D  +  G A            RPI+  + P     
Sbjct: 23  DSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMR 82

Query: 50  D--------------VAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTA 95
                           AG ++E GS           VA +    G   +++  +      
Sbjct: 83  SMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAI---GGAMYSQYRCIPADQCL 139

Query: 96  SRPLEVSAAEGAGLPLAGLTAL-----------EALTQSAG----------LAKLGNSHV 134
             P   + A+GA   +  LTAL            AL  +A           +       +
Sbjct: 140 VLPEGATPADGASSFVNPLTALGMVETMRLEGHSALVHTAAASNLGQMLNQICLKDGIKL 199

Query: 135 TATCG-ARNIEFVKSLGADEVLDYKTPD--------------GAALKSPSGRKYDAVIHC 179
                     + +K+ GA  V +  +P                 A  +  G K    I  
Sbjct: 200 VNIVRKQEQADLLKAQGAVHVCNAASPTFMQDLTEALVSTGATIAFDATGGGKLGGQILT 259

Query: 180 ARGIPWSTFEPNLAENGKVI----------DLTPTPSAMLTFAWQKLTFSKKQLVPLLVI 229
                 +      +  G             D +PT           +      L P L  
Sbjct: 260 CMEAALNKSAREYSRYGSTTHKQVYLYGGLDTSPTEFNRNFGMAWGMGGW--LLFPFLQK 317

Query: 230 PKGENLVFLVKLLK---EGKIKTLIDSKHLLSKAEDAWA-KGADGHAT-GKIILEP 280
              E    L + +    +    +    +  L++  D       +  AT  K ++ P
Sbjct: 318 IGRERANALKQRVVAELKTTFASHYSKEISLAEVLDLDMIAVYNKRATGEKYLINP 373

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score = 80.4 bits (199), Expect = 1e-17
 Identities = 75/331 (22%), Positives = 119/331 (35%), Gaps = 61/331 (18%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           V +P P+ +EVL+++  + +   D ++ KGV       + P I   + AG I+EVG E+ 
Sbjct: 21  VNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAK-QGFRLPIILGHENAGTIVEVG-ELA 78

Query: 64  NFKAGYNVVAILNH--------------------FSG----GGLAEFAMVKESLTASRPL 99
             K G NVV                           G    GG +E+ +VK S    +  
Sbjct: 79  KVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKLN 138

Query: 100 EVSAAEGAGLPLAGLTALEALTQSA--------------GLAKLGNSHV----TATCGAR 141
            +S  E A L  AG T++ A+ Q+               G+  L    +           
Sbjct: 139 SLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNIT 198

Query: 142 NI---------EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEP-- 190
            +         +F   LGAD V + K  +    K   G      I    G    T     
Sbjct: 199 IVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLV-GTE-ETTYNLG 256

Query: 191 -NLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT 249
             LA+ G +I L       ++          K+L+        + L  +V+L + GKIK 
Sbjct: 257 KLLAQEGAII-LVGMEGKRVSLEAFDTAVWNKKLLGSNYGSLND-LEDVVRLSESGKIKP 314

Query: 250 LIDSKHLLSKAEDAWAKGADGHATGKIILEP 280
            I  K  L     A+    +G   G+ ++ P
Sbjct: 315 YI-IKVPLDDINKAFTNLDEGRVDGRQVITP 344

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 78.8 bits (195), Expect = 5e-17
 Identities = 66/335 (19%), Positives = 109/335 (32%), Gaps = 70/335 (20%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           V +P P  D++L+KVEA  +   D  +  G      P   P     +  G ++E GS V+
Sbjct: 40  VGIPEPGPDDLLVKVEACGICGTDRHLLHGEF----PSTPPVTLGHEFCGIVVEAGSAVR 95

Query: 64  NFKAG---------------------YNV---VAILNHFSGGGLAEFAMVKESLTASRPL 99
           +   G                      N+   +  +     GG AE+ +V        PL
Sbjct: 96  DIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPL 155

Query: 100 EVSAAEGAGL-PLAGLTALEALTQS------------AG--------LAKL-GNSHVTAT 137
            +    GA   PLA    L  +  S             G        LA+L G + V  +
Sbjct: 156 TLDPVHGAFCEPLA--CCLHGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILS 213

Query: 138 --CGARNIEFVKSLGADEVLDYKTPDGAA----LKSPSGRKYDAVIHCARGIPWSTFE-- 189
                +     + +GA   +D    D                D VI CA G+   T +  
Sbjct: 214 TRQATK-RRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA-GVA-ETVKQS 270

Query: 190 -PNLAENGKVIDL-TPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKI 247
                  G V+ L        +      + F + +++   + P          L+  G I
Sbjct: 271 TRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFINPFVHRRA--ADLVATGAI 328

Query: 248 --KTLIDSKHLLSKAEDAWAKGADGHATGKIILEP 280
               +I  +  L +A D  +  A      K+++ P
Sbjct: 329 EIDRMISRRISLDEAPDVISNPAAAGE-VKVLVIP 362

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 75.0 bits (185), Expect = 9e-16
 Identities = 63/334 (18%), Positives = 110/334 (32%), Gaps = 63/334 (18%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           +P PTP   E+LLKV A+ L   D  +    A        P     +  G + E+G  V 
Sbjct: 18  IPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQY-AYGLPLTLGHEGVGTVAELGEGVT 76

Query: 64  NFKAGYNVV-----------------------------AILNHFSGGGLAEFAMVKESLT 94
            F  G  V                                    S G +AE+ +V  +  
Sbjct: 77  GFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARH 136

Query: 95  ASRPLEVSAAEGAGLPLAGLTALEALTQSAGLAKLGNSHV---------------TATCG 139
                ++     A L  AGLT   A+++   L   G++ V                A   
Sbjct: 137 LVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSA 196

Query: 140 ARNI---------EFVKSLGADEVLDYKTPDGAALKSPS-GRKYDAVIHCARGIPWSTFE 189
           AR I            + +GAD  +        A++  + G+   AV     G   ST +
Sbjct: 197 ARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFV-GAQ-STID 254

Query: 190 ---PNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGK 246
                +A +G +  +    +         +      +V      + E L+ +V L + G+
Sbjct: 255 TAQQVVAVDGHIS-VVGIHAGAHAKVGFFMIPFGASVVTPYWGTRSE-LMEVVALARAGR 312

Query: 247 IKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP 280
           +  +      L +   A+ +  +G   G+ ++ P
Sbjct: 313 LD-IHTETFTLDEGPAAYRRLREGSIRGRGVVVP 345

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 71/337 (21%), Positives = 117/337 (34%), Gaps = 70/337 (20%)

Query: 4   VPVPTPRK-DEVLLKVEAS----SLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEV 58
           V  P      +V++++  +    +    D  + +G+   +L  K PY    +  G I EV
Sbjct: 33  VDYPRLEGRFDVIVRIAGAGVCHT----DLHLVQGMWHELLQPKLPYTLGHENVGYIEEV 88

Query: 59  GSEVKNFKAGYNVVAIL--------------------NHFSG----GGLAEFAMVKESLT 94
              V+  + G  V+                         F G    GG AEF        
Sbjct: 89  AEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSV 148

Query: 95  ASRPLEVS---AAEGAGLPLAGLTALEALTQSAGLAK------------LGNSHV---TA 136
              P ++S     E A L  AG+TA  A+ ++A                LG+  V     
Sbjct: 149 IKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKV 208

Query: 137 TCGARNI---------EFVKSLGADEVLDYKTPDGAALKSPS-GRKYDAVIHCARGIPWS 186
              A  I         +  + LGAD V+D +      +   + GR  +  +    G   +
Sbjct: 209 MTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFV-GSQ-A 266

Query: 187 TFEP---NLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLK 243
           T +     L   G++I +       L F   ++  S+      LV    E L  LV L  
Sbjct: 267 TVDYTPYLLGRMGRLIIV--GYGGELRFPTIRVISSEVSFEGSLVGNYVE-LHELVTLAL 323

Query: 244 EGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP 280
           +GK++  +   H L +  D   +   G   G+ +L P
Sbjct: 324 QGKVRVEV-DIHKLDEINDVLERLEKGEVLGRAVLIP 359

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 37/196 (18%)

Query: 13  EVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVV 72
            VL+KV  S +N  D    K      + R++P I   D AG ++   S    F  G  V+
Sbjct: 33  GVLIKVAYSGINYKDGLAGKAGGN--IVREYPLILGIDAAGTVVS--SNDPRFAEGDEVI 88

Query: 73  AI-----LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEA-------- 119
           A      ++    GGL+E+A V        P  +S  E      AG TA  +        
Sbjct: 89  ATSYELGVSRD--GGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNG 146

Query: 120 ---------LTQSAG---------LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPD 161
                    +T + G         L K G   V +T      +++K LGA EV+  +   
Sbjct: 147 LSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVY 206

Query: 162 GAALKSPSGRKYDAVI 177
              LK+ S +++   +
Sbjct: 207 DGTLKALSKQQWQGAV 222

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 44/196 (22%), Positives = 83/196 (42%), Gaps = 37/196 (18%)

Query: 13  EVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVV 72
           +VL++V  SS+N  D        +  + + +P++P  D+AG ++   S+   F+ G  V+
Sbjct: 32  DVLVRVHYSSVNYKDGLASIPDGK--IVKTYPFVPGIDLAGVVVS--SQHPRFREGDEVI 87

Query: 73  AI-----LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEA-------- 119
           A      + HF  GG +E+A +        P  ++  E   +  AG TA  +        
Sbjct: 88  ATGYEIGVTHF--GGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHG 145

Query: 120 ---------LTQSAG---------LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPD 161
                    +T + G         LAK G +   +T  A   ++++ LGA EVL  +   
Sbjct: 146 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVM 205

Query: 162 GAALKSPSGRKYDAVI 177
              ++    +++ A +
Sbjct: 206 AERIRPLDKQRWAAAV 221

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 53/252 (21%), Positives = 82/252 (32%), Gaps = 67/252 (26%)

Query: 4   VPVPTPRKDEVLLKVEA-----SSLNAF--DWKIKKGVARPILPRKFPYIPATDVAGEII 56
           VPVP P   +V +K+EA     + L+A   DW          +    P+IP  +  G + 
Sbjct: 20  VPVPQPGPGQVQVKIEASGVCHTDLHAADGDWP---------VKPTLPFIPGHEGVGYVS 70

Query: 57  EVGSEVKNFKAGYNV-VAILNH--------------------FSG----GGLAEFAMVKE 91
            VGS V   K G  V V  L                       +G    GG  E+ +   
Sbjct: 71  AVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADP 130

Query: 92  SLTASRPLEVSAAEGAGLPL--AGLTALEALTQSA-------------GLAKLG------ 130
           +     P +V   E A  P+  AG+T  + L  +              GL  +       
Sbjct: 131 NYVGLLPDKVGFVEIA--PILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARA 188

Query: 131 -NSHVTA-TCGARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCA-RGIPWST 187
               V A       +   + LGA+  ++ +  D AA           V+  A     +S 
Sbjct: 189 MGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKAFSQ 248

Query: 188 FEPNLAENGKVI 199
               +   G + 
Sbjct: 249 AIGMVRRGGTIA 260

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 62/340 (18%), Positives = 107/340 (31%), Gaps = 73/340 (21%)

Query: 4   VPVPT-PRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEV 62
             +P    +DEV +K+ +S L   D               +P     + +G I  VGS V
Sbjct: 17  SVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNG----AHYYPITLGHEFSGYIDAVGSGV 72

Query: 63  KNFKAG---------------------YNV---VAILNHFSGGGLAEFAMVKESLTASRP 98
            +   G                     Y+       +     GG AE+ +VK     + P
Sbjct: 73  DDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALP 132

Query: 99  LEVSAAEGAGL-PLAGLTALEALTQS------------AG--------LAKL-GNSHVTA 136
            ++   +GA + P+     L A   +            AG         A   G   VTA
Sbjct: 133 TDMPIEDGAFIEPIT--VGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTA 190

Query: 137 T-CGARNIEFVKSLGADEVLDYKTPDGAAL--KSPSGRKYDAVIHCARGIPWSTFE---P 190
               +  +   KS GA +  +        +       R    ++  A G+P  T E    
Sbjct: 191 IDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETA-GVP-QTVELAVE 248

Query: 191 NLAENGKV--IDLTPTPSAMLTFAWQKLTFSKKQL------VPLLVIPKGENLVFLVKLL 242
               + ++  +        + +  + K+    K+L      +       G+      +LL
Sbjct: 249 IAGPHAQLALVGTLHQDLHLTSATFGKILR--KELTVIGSWMNYSSPWPGQEWETASRLL 306

Query: 243 KEGKI--KTLIDSKHLLSKAEDAWAKGADGHATGKIILEP 280
            E K+  + LI  +        A    A     GK++L P
Sbjct: 307 TERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP 346

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 67.6 bits (166), Expect = 4e-13
 Identities = 72/330 (21%), Positives = 113/330 (34%), Gaps = 61/330 (18%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           V VP P   EVL+KV A+S+   D  I +         K P I   +VAGE++E+G  V+
Sbjct: 22  VDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVE 81

Query: 64  NFKAG---------------------YNV---VAILNHFSGGGLAEFAMVKESLTASRPL 99
             + G                     Y+V     I    + G  AE+A+V        P 
Sbjct: 82  GIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPK 141

Query: 100 EVSAAEGAGL-PLAGLTALEALTQSAGLAK---------LGNSHVTA--TCGARNI---- 143
            +         PL    A++ +       K         LG   +      GA  +    
Sbjct: 142 SIPPEYATLQEPLG--NAVDTVLAGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSE 199

Query: 144 ------EFVKSLGADEVLDYKTPDGAA--LKSPSGRKYDAVIHCARGIPWSTFE---PNL 192
                 E  K +GAD V++    D     +    G   D  +  + G P    E     +
Sbjct: 200 PSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFS-GAP-KALEQGLQAV 257

Query: 193 AENGKVIDLTPTPSAMLTFAWQKLTFSK-KQLVPLLVIPKGENLVFLVKLLKEGKI--KT 249
              G+V  L       +T  +  L   K   +  +      E    + +LL+ GK+    
Sbjct: 258 TPAGRVS-LLGLYPGKVTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDP 316

Query: 250 LIDSK-HLLSKAEDAWAKGADGHATGKIIL 278
           +I  K     K E+A+     G   GK++ 
Sbjct: 317 IITHKYKGFDKYEEAFELMRAGKT-GKVVF 345

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score = 66.8 bits (164), Expect = 6e-13
 Identities = 57/233 (24%), Positives = 83/233 (35%), Gaps = 68/233 (29%)

Query: 4   VPVPTPRKDEVLLKVEA-----SSLNAF--DWKIKKGVARPILPRKFPYIPATDVAGEII 56
           V  PT    EVL++++A     + L+A   DW          +  K P IP  +  G + 
Sbjct: 18  VEKPTISYGEVLVRIKACGVCHTDLHAAHGDWP---------VKPKLPLIPGHEGVGIVE 68

Query: 57  EVGSEVKNFKAGYNV-VAILN--------------------HFSG----GGLAEFAMVKE 91
           EVG  V + K G  V +  L                       +G    GG AE+     
Sbjct: 69  EVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAA 128

Query: 92  SLTASRPLEVSAAEGAGLPL--AGLTALEALTQS----------AGLAKLGN-------- 131
                 P  +S  E A  P+  AG+T  +AL  +           G+  LG+        
Sbjct: 129 DYVVKIPDNLSFEEAA--PIFCAGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKA 186

Query: 132 --SHVTA-TCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCA 180
              +V A   G   +E  K LGAD V++    D    +K   G    A +  A
Sbjct: 187 MGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGG-VHAAVVTA 238

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 67.4 bits (165), Expect = 7e-13
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 10/122 (8%)

Query: 7   PTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFK 66
                 EV + + A+ +N  D  I  G+              ++ AG ++E G  V    
Sbjct: 234 APLGDGEVRIAMRAAGVNFRDALIALGMYPG------VASLGSEGAGVVVETGPGVTGLA 287

Query: 67  AGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAGL 126
            G  V+              A+    +    P   S A  A +P+  LTA  AL   AGL
Sbjct: 288 PGDRVMG----MIPKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGL 343

Query: 127 AK 128
             
Sbjct: 344 RP 345

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 54/218 (24%), Positives = 79/218 (36%), Gaps = 41/218 (18%)

Query: 13  EVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVV 72
           +V + V  SSLN  D     G  +  + R FP IP  D AG +    SE   F AG  V+
Sbjct: 29  DVTVDVHWSSLNYKDALAITGKGK--IIRHFPMIPGIDFAGTVHA--SEDPRFHAGQEVL 84

Query: 73  AI-----LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEA-------- 119
                   NH+  GGLAE A VK     + P  +S+     +  AG TA+          
Sbjct: 85  LTGWGVGENHW--GGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAG 142

Query: 120 ---------LTQSAG---------LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKT-P 160
                    +T ++G         L KLG      +       ++KSLGA+ +L      
Sbjct: 143 IRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFA 202

Query: 161 DGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKV 198
           +   L+      +   I        +     +   G V
Sbjct: 203 ESRPLEKQ---LWAGAIDTVGDKVLAKVLAQMNYGGCV 237

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 54/355 (15%), Positives = 103/355 (29%), Gaps = 83/355 (23%)

Query: 4   VPVPT-PRKDEVLLKVEA-----SSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIE 57
           VP P   +  E+++KV+A     S ++      ++G         FP     + +G ++E
Sbjct: 47  VPEPRIEKPTEIIIKVKACGICGSDVHMAQTD-EEGYILYPGLTGFPVTLGHEFSGVVVE 105

Query: 58  VGSEV------KNFKAG---------------------YNV---VAILNHFSGGGLAEFA 87
            G E       K F+ G                      N    +  L     G  AE+ 
Sbjct: 106 AGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFAEYV 165

Query: 88  MVKES-------LTASRPLEVSAAEGAGL-PLAGLTALEALTQSAGLAKLGNSHVTATCG 139
            V          L      +     G+ + P +   A  A+    G  + G++ V    G
Sbjct: 166 KVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTS--VAYNAVIVRGGGIRPGDNVVILGGG 223

Query: 140 --------------ARNI----------EFVKSLGADEVLDYKTPDGAA--LKSPSGRKY 173
                         A  +             K LGAD V+D    +     L   +G   
Sbjct: 224 PIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGA 283

Query: 174 DAVIHCARGIPWSTFEPNLAE-------NGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPL 226
              +    G+P     P + E           + +     A +    +     + Q+V  
Sbjct: 284 KLFLEAT-GVP-QLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGS 341

Query: 227 LVIPKGENLVFLVKLLKEG-KIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP 280
                      ++ L+  G  +  +I     + +  +   +     +  K+ +  
Sbjct: 342 QGHSGHGTFPRVISLMASGMDMTKIISKTVSMEEIPEYIKRLQTDKSLVKVTMLN 396

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 61.8 bits (151), Expect = 3e-11
 Identities = 51/237 (21%), Positives = 83/237 (35%), Gaps = 69/237 (29%)

Query: 2   VHVPVPTPRKDEVLLKVEA-----SSLNAF--DWKIKKGVARPILPRKFPYIPATDVAGE 54
             +PVP P+ +E+L+ V+      + L+A+  DW          LP K P +   + AG 
Sbjct: 21  KDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWP---------LPVKLPLVGGHEGAGV 71

Query: 55  IIEVGSEVKNFKAGYNV-VAILN--------------------HFSG----GGLAEFAMV 89
           ++ +G  VK +K G    +  LN                      SG    G   ++A  
Sbjct: 72  VVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATA 131

Query: 90  KESLTASRPLEVSAAEGAGLPL--AGLTALEALTQS--------------AGL------- 126
                A  P     A+ A  P+  AG+T  +AL  +               GL       
Sbjct: 132 DAVQAAHIPQGTDLAQVA--PILCAGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQY 189

Query: 127 AKLGNSHVTA-TCGARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCA 180
           AK     V     G    E  +S+G +  +D+        A+   +      VI+ +
Sbjct: 190 AKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVS 246

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 63/332 (18%), Positives = 109/332 (32%), Gaps = 63/332 (18%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
            PVP P   E+L++VEA+S+   D  I K  A      + P +   + +G +  VG  V+
Sbjct: 18  RPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVR 77

Query: 64  NFKAG---------------------YNV---VAILNHFSGGGLAEFAMVKESLTASRPL 99
             + G                     Y+V     IL     GG AE+ +V        P 
Sbjct: 78  RPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPK 137

Query: 100 EVSAAEGAGL-PLAGLTALEALTQSAGLAKLGNS--------------HVTATCGARNI- 143
           ++     A L P     A+     +      G S               V    GA  I 
Sbjct: 138 DLPFEVAAILEPFG--NAVHT-VYAGSG-VSGKSVLITGAGPIGLMAAMVVRASGAGPIL 193

Query: 144 ---------EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFE---PN 191
                     F +      V   +      ++  +G   + ++  + G   +        
Sbjct: 194 VSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEFS-GNE-AAIHQGLMA 251

Query: 192 LAENGKVIDLTPTPSAMLTFAWQ-KLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKI--K 248
           L   G+   +   PS  + F    +L         +      +  +    L+  G++   
Sbjct: 252 LIPGGEAR-ILGIPSDPIRFDLAGELVMRGITAFGIAGRRLWQTWMQGTALVYSGRVDLS 310

Query: 249 TLIDSKHLLSKAEDAWAKGADGHATGKIILEP 280
            L+  +  LS+  +A+   A G A  K+IL+P
Sbjct: 311 PLLTHRLPLSRYREAFGLLASGQA-VKVILDP 341

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 68/348 (19%), Positives = 119/348 (34%), Gaps = 93/348 (26%)

Query: 4   VPVPTPRKDEVLLKVEA-----SSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEV 58
            P+P P  +EVLL++ +     S ++ +++     +   I+  K P +   + +G + +V
Sbjct: 24  YPIPEPGPNEVLLRMHSVGICGSDVHYWEYG---RIGNFIV--KKPMVLGHEASGTVEKV 78

Query: 59  GSEVKNFKAG---------------------YNVVAILNHFS----GGGLAEFAMVKESL 93
           GS VK+ K G                     YN+   +   +     G L  F     + 
Sbjct: 79  GSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAF 138

Query: 94  TASRPLEVSAAEGAGL-PLAGLTALEALTQSAGLAKLGNSHVTATCG------------- 139
               P  V+  EGA + PL+    + A  +  G+  LG+  +    G             
Sbjct: 139 CYKLPDNVTFEEGALIEPLS--VGIHACRR-GGV-TLGHKVLVCGAGPIGMVTLLVAKAM 194

Query: 140 -ARNI----------EFVKSLGADEVLDYKTPDG----AALKSPSGRKYDAVIHCARGIP 184
            A  +             K +GAD VL             ++   G K +  I C  G  
Sbjct: 195 GAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT-GAE 253

Query: 185 WSTFE--PNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFL---- 238
            ++ +       +G  + L    S M T         +  +       KG   VF     
Sbjct: 254 -ASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDI-------KG---VFRYCNT 302

Query: 239 ----VKLLKEGKI--KTLIDSKHLLSKAEDAWAKGADGHATGKIILEP 280
               + +L    +  K L+  +  L KA +A+     G    KI+L+ 
Sbjct: 303 WPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLG-LKIMLKC 349

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 54.9 bits (133), Expect = 7e-09
 Identities = 53/235 (22%), Positives = 86/235 (36%), Gaps = 65/235 (27%)

Query: 4   VPVPTPRKDEVLLKVEA-----SSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEV 58
            P+P P++DEVLL++       S ++ ++      +A  I+  K P +   + +G +++V
Sbjct: 21  RPIPEPKEDEVLLQMAYVGICGSDVHYYEHG---RIADFIV--KDPMVIGHEASGTVVKV 75

Query: 59  GSEVKNFKAG---------------------YNVVAILNHFS----GGGLAEFAMVKESL 93
           G  VK+ K G                     YN+   L   +     G LA + +     
Sbjct: 76  GKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADF 135

Query: 94  TASRPLEVSAAEGAGL-PLAGLTALEALTQS------------AG--------LAKLGNS 132
               P  VS  EGA L PL+    + A  ++            AG         AK   +
Sbjct: 136 CHKLPDNVSLEEGALLEPLS--VGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA 193

Query: 133 HVTAT-CGARNIEFVKSLGADEVLDYKTPDG------AALKSPSGRKYDAVIHCA 180
            V  T    R +E  K+ GAD  L               ++S  G   +  I C+
Sbjct: 194 FVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCS 248

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 54/310 (17%), Positives = 100/310 (32%), Gaps = 48/310 (15%)

Query: 7    PTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFK 66
                  + L  V  +SLN  D  +  G   P        IP   +  + +          
Sbjct: 1555 LPASCQDRLCSVYYTSLNFRDVMLATGKLSP------DSIPGKWLTRDCMLGMEFSGRDA 1608

Query: 67   AGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAGL 126
            +G  V+ +       GLA   ++ +  T   P   +  E A +P+   TA  +L     +
Sbjct: 1609 SGRRVMGM---VPAEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRM 1665

Query: 127  ----------------------AKLGNSHVTATCG-ARNIEFVKS----LGADEVLDYKT 159
                                  A      V  T G A    ++++    L      + + 
Sbjct: 1666 QPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRD 1725

Query: 160  PDGAA--LKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDL------TPTPSAMLTF 211
                   L+  +G+  D V++             LA++G+ +++            M  F
Sbjct: 1726 TSFEQHVLRHTAGKGVDLVLNSLAEEKLQASVRCLAQHGRFLEIGKFDLSNNHALGMAVF 1785

Query: 212  AWQKLTFSKKQLVPLLVIP---KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGA 268
              + +TF    L  L         E    L   ++EG ++ L  +    +K E A+   A
Sbjct: 1786 -LKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVFPRTKVEAAFRYMA 1844

Query: 269  DGHATGKIIL 278
             G   GK+++
Sbjct: 1845 QGKHIGKVVI 1854

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 55/348 (15%), Positives = 112/348 (32%), Gaps = 96/348 (27%)

Query: 7   PTPRKDEVLLKVEA-----SSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
              ++ EV + V +     S ++ +       +   I+  +  ++   + AGE+I V   
Sbjct: 36  EELKEGEVTVAVRSTGICGSDVHFWKHG---CIGPMIV--ECDHVLGHESAGEVIAVHPS 90

Query: 62  VKNFKAG---------------------YNVVAILNHFS----GGGLAEFAMVKESLTAS 96
           VK+ K G                     YN    ++  S     G L  +          
Sbjct: 91  VKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHK 150

Query: 97  RPLEVSAAEGAGL-PLAGLTALEALTQSAGLAKLGNS----------HVTATC----GAR 141
               +S   GA L PL+   AL  L + AG+ +LG+            +T  C    GA 
Sbjct: 151 IG-NMSYENGAMLEPLS--VALAGLQR-AGV-RLGDPVLICGAGPIGLITMLCAKAAGAC 205

Query: 142 NI----------EFVKSLGADEVLDYKTPDGA------ALKSPSGRKYDAVIHCARGIPW 185
            +          +F K +  + V        A       ++S  G +    + C  G+  
Sbjct: 206 PLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECT-GVE- 263

Query: 186 STFE--PNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFL----- 238
           S+        + G  + +       +   + + +  +  L       +     +      
Sbjct: 264 SSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVREVDL-------QF---QYRYCNTW 313

Query: 239 ---VKLLKEGKI--KTLIDSKHLLSKAEDAWAKGADGHATG-KIILEP 280
              ++L++ G +    L+  +  L  A  A+   +D      K+ ++ 
Sbjct: 314 PRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQS 361

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 51/351 (14%), Positives = 84/351 (23%), Gaps = 90/351 (25%)

Query: 4   VPVPTPRKDEVLLKVEA-----SSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEV 58
            P P P   E L++        +               P    +   +   +  G +++ 
Sbjct: 18  KPRPEPESGEALVRTLRVGVCGTDHEVIAG---GHGGFPEG--EDHLVLGHEAVGVVVDP 72

Query: 59  GSEVKNFKAGYNVVAILNH----------------------FSG-------GGLAEFAMV 89
                  + G  VV  +                        +         G ++EF   
Sbjct: 73  N--DTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTS 130

Query: 90  KESLTASRPLEVSAAEGAGL-PLA-GLTALEALTQSAGLAKLGNSHV------------- 134
            E      P   +   G  + P++    ALE    S        S               
Sbjct: 131 PEKYLVRIPRSQA-ELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTL 189

Query: 135 ----TATCGARNI-------------EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVI 177
                   G  N+             + ++ L A  V   +TP             D + 
Sbjct: 190 AMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVEDVPDVYEQ--MDFIY 247

Query: 178 HCARGIPWSTFEP---NLAENGKVIDL----TPTPSAMLTFAWQKLTFSKKQLVPLLVIP 230
               G P          LA NG    L                +++    K LV  +   
Sbjct: 248 EAT-GFP-KHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVNSH 305

Query: 231 KGENLVFLVKLLKEGKI--KTLIDSKHLLSKAEDAWAKGADGHATGKIILE 279
                   V   K  K   + L+   H LS+ E A+          K  +E
Sbjct: 306 VEHFEAATVTFTKLPKWFLEDLVTGVHPLSEFEAAFDDDDTT---IKTAIE 353

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 13/67 (19%)

Query: 4  VPVPTPRKDEVLLKVEASS-----LNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEV 58
            +    +  +L+++ ++      ++ F  +  +           P I   + AG ++EV
Sbjct: 35 FEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRV--------PLPIILGHEGAGRVVEV 86

Query: 59 GSEVKNF 65
            E ++ 
Sbjct: 87 NGEKRDL 93

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 4  VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
          + V  P+  EV +K+ AS +   D  + K +    +P KFP I   +  G +  +G+ V 
Sbjct: 27 ITVAPPKAHEVRIKILASGICGSDSSVLKEI----IPSKFPVILGHEAVGVVESIGAGVT 82

Query: 64 NFKAGYNVVAI 74
            K G  V+ +
Sbjct: 83 CVKPGDKVIPL 93

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 4  VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
          + +  P+ DEVL+KV A+ +   D  ++        P   P +   + +G I  +G  V 
Sbjct: 24 LKIRQPQGDEVLVKVVATGMCHTDLIVRDQK----YPVPLPAVLGHEGSGIIEAIGPNVT 79

Query: 64 NFKAGYNVV 72
            + G +VV
Sbjct: 80 ELQVGDHVV 88

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 4  VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
          + V  P+  EV ++V A+ +   D               FP +   + AG +  VG  V 
Sbjct: 26 IEVSPPKACEVRIQVIATCVCPTDINATDPK----KKALFPVVLGHECAGIVESVGPGVT 81

Query: 64 NFKAGYNVV 72
          NFK G  V+
Sbjct: 82 NFKPGDKVI 90

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 4  VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
          V V  P+  EV +K+ A+ +   D  +  G     L    P I   + AG +  +G  V 
Sbjct: 26 VEVAPPKAHEVRIKMVATGICRSDDHVVSGT----LVTPLPVIAGHEAAGIVESIGEGVT 81

Query: 64 NFKAGYNVV 72
            + G  V+
Sbjct: 82 TVRPGDKVI 90

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* Length = 333

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 50/206 (24%), Positives = 71/206 (34%), Gaps = 57/206 (27%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAF------DWKIKKGVARPILPRKFPYIPATDVAGEI 55
             V +P  +  EVLL+    S++ +        K                +    V   +
Sbjct: 29  KTVELPPLKNGEVLLEALFLSVDPYMRIASKRLKEGA------------VMMGQQV-ARV 75

Query: 56  IEVGSEVKNFKAGYNVVAILN---HFSGGGLAEFAMVKESLTASRPLEVSAAEGA-GLPL 111
           +E  S+   F AG  V+A      HF   G      +        PL  S A G  G+P 
Sbjct: 76  VE--SKNSAFPAGSIVLAQSGWTTHFISDG-KGLEKLLTEWPDKLPL--SLALGTIGMP- 129

Query: 112 AGLTALEALTQ--------------SAG--------LAKLGNSHVTATCG-ARNIEFVKS 148
            GLTA   L +              +AG        +AKL    V    G    I ++K 
Sbjct: 130 -GLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ 188

Query: 149 LGADEVLDYKTPD--GAALKS--PSG 170
           +G D   +YKT +    ALK   P G
Sbjct: 189 IGFDAAFNYKTVNSLEEALKKASPDG 214

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 40 PRKFPYIPATDVAGEIIEVGSEVKNFKAG 68
             +P IP  ++AG I EVG  VK FK G
Sbjct: 55 EGIYPMIPGHEIAGIIKEVGKGVKKFKIG 83

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 4  VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
          + V  P+  EV +K+ A+++   D     G A P     FP I     AG +  VG  V 
Sbjct: 24 IEVAPPKAHEVRIKIIATAVCHTDAYTLSG-ADP--EGCFPVILGHLGAGIVESVGEGVT 80

Query: 64 NFKAGYNVV 72
            KAG  V+
Sbjct: 81 KLKAGDTVI 89

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 40 PRKFPYIPATDVAGEIIEVGSEVKNFKAG 68
             +P +P  +V GE++EVGS+V  F  G
Sbjct: 60 MSNYPMVPGHEVVGEVVEVGSDVSKFTVG 88

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 7/29 (24%), Positives = 16/29 (55%)

Query: 40  PRKFPYIPATDVAGEIIEVGSEVKNFKAG 68
              +P +P  ++ G ++ VG +V+ +  G
Sbjct: 73  GTVYPCVPGHEIVGRVVAVGDQVEKYAPG 101

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 36/214 (16%), Positives = 63/214 (29%), Gaps = 70/214 (32%)

Query: 2   VHVPVPTPRKD-EVLLKVEASSLNAF------DWKIKKGVARPILPRKFPYIPATDV--- 51
             V +P    + +V ++    S++ +      +                 YI    +   
Sbjct: 32  EEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGT------------DYITPWQLSQV 79

Query: 52  -----AGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEFAMVKES-----LTASRPLEV 101
                 G I E  S+  N   G  V +              ++  +             +
Sbjct: 80  VDGGGIGIIEE--SKHTNLTKGDFVTSFY-----WPWQTKVILDGNSLEKVDPQLVDGHL 132

Query: 102 SAAEGA-GLPLAGLTALEALTQ----------------SAG--------LAKL-GNSHVT 135
           S   GA G+P  GLT+L  + +                +AG        +    G S V 
Sbjct: 133 SYFLGAIGMP--GLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVV 190

Query: 136 ATCG-ARNIEFVKS-LGADEVLDYKTPD-GAALK 166
             CG       + S LG D  ++YK  +    L+
Sbjct: 191 GICGTHEKCILLTSELGFDAAINYKKDNVAEQLR 224

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	280
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.97
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.67
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.62
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.52
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	96.09
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.73
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.64
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	95.27
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	92.56
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	91.36
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	90.53
1g31_A	111	GP31; chaperone, CO-chaperonin, groes, in VIVO pro	89.68
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	85.7
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	85.0
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	84.89
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	84.71

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=6.4e-50  Score=341.34  Aligned_cols=275  Identities=24%  Similarity=0.321  Sum_probs=236.9

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe-------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI-------   74 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~-------   74 (280)
                      +|+|.|+|+++||+|||.++|||++|+.++.|..+.  ...+|.++|||++|+|+++|++|++|++||+|++.       
T Consensus        44 ~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~P~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~~~~c~~  121 (363)
T 3uog_A           44 AERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGL--DLAFPFVPASDMSGVVEAVGKSVTRFRPGDRVISTFAPGWLD  121 (363)
T ss_dssp             EEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTC--CCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSTTCCS
T ss_pred             EeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC--CCCCCcCcccceEEEEEEECCCCCCCCCCCEEEEeccccccc
Confidence            578899999999999999999999999999987642  24689999999999999999999999999999986       


Q ss_pred             --------------ecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh---------------
Q 048785           75 --------------LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG---------------  125 (280)
Q Consensus        75 --------------~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~---------------  125 (280)
                                    .+....|+|+||+.+|++.++++|+++++++||+++++++|||+++.+.++               
T Consensus       122 g~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~v  201 (363)
T 3uog_A          122 GLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGV  201 (363)
T ss_dssp             SSCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEECCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHH
T ss_pred             cccccccccccccccCcCCCCcceeEEEechHHeEECCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHH
Confidence                          233456999999999999999999999999999999999999999965443               


Q ss_pred             ------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCc
Q 048785          126 ------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENG  196 (280)
Q Consensus       126 ------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g  196 (280)
                            +|+.+|++|++++++ ++.++++++|++++++++..+  ....+.+.++++|++|||+|+..+..++++++++|
T Consensus       202 G~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~l~~~G  281 (363)
T 3uog_A          202 ALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAGGAGLGQSLKAVAPDG  281 (363)
T ss_dssp             HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHEEEEE
T ss_pred             HHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCChHHHHHHHHHhhcCC
Confidence                  889999999999965 889999999999999954344  23344566778999999999888999999999999


Q ss_pred             EEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcE
Q 048785          197 KVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKI  276 (280)
Q Consensus       197 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkv  276 (280)
                      +++.+|........++...+..++.++.++. ....++++++++++++|+++++++++|+++++++||+.+.++. .||+
T Consensus       282 ~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~-~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~-~gKv  359 (363)
T 3uog_A          282 RISVIGVLEGFEVSGPVGPLLLKSPVVQGIS-VGHRRALEDLVGAVDRLGLKPVIDMRYKFTEVPEALAHLDRGP-FGKV  359 (363)
T ss_dssp             EEEEECCCSSCEECCBTTHHHHTCCEEEECC-CCCHHHHHHHHHHHHHHTCCCCEEEEEEGGGHHHHHHTGGGCC-SBEE
T ss_pred             EEEEEecCCCcccCcCHHHHHhCCcEEEEEe-cCCHHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHHcCC-CccE
Confidence            9999986554333344455566788888765 3468899999999999999999999999999999999999998 8999


Q ss_pred             EEeC
Q 048785          277 ILEP  280 (280)
Q Consensus       277 vi~~  280 (280)
                      ||++
T Consensus       360 vi~~  363 (363)
T 3uog_A          360 VIEF  363 (363)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9975

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=5.7e-49  Score=330.33  Aligned_cols=271  Identities=31%  Similarity=0.408  Sum_probs=231.3

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhcc--CCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC-C
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGV--ARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH-F   78 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~--~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~   78 (280)
                      +|+|.|+|+++||+||+.+++||++|+.++.|.  .+......+|.++|||++|+|+++|+++++|++||+|++..+. .
T Consensus        24 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~~  103 (321)
T 3tqh_A           24 VDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGSDVNNVNIGDKVMGIAGFPD  103 (321)
T ss_dssp             EEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECSTTT
T ss_pred             EecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEccCCCC
Confidence            578899999999999999999999999999882  1100123678999999999999999999999999999988654 4


Q ss_pred             CCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEE
Q 048785           79 SGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTA  136 (280)
Q Consensus        79 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~  136 (280)
                      ..|+|+||+.+|++.++++|+++++++||+++++++|||+++ +.++                      +|+.+|++|++
T Consensus       104 ~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~  182 (321)
T 3tqh_A          104 HPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVIT  182 (321)
T ss_dssp             CCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEE
Confidence            579999999999999999999999999999999999999999 5444                      88999999999


Q ss_pred             EecCCcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhh
Q 048785          137 TCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQK  215 (280)
Q Consensus       137 ~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~  215 (280)
                      ++++++.++++++|+++++++++.+ .....    +++|++|||+|++.+..++++++++|+++.+|.......   ...
T Consensus       183 ~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~----~g~D~v~d~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~---~~~  255 (321)
T 3tqh_A          183 TASKRNHAFLKALGAEQCINYHEEDFLLAIS----TPVDAVIDLVGGDVGIQSIDCLKETGCIVSVPTITAGRV---IEV  255 (321)
T ss_dssp             EECHHHHHHHHHHTCSEEEETTTSCHHHHCC----SCEEEEEESSCHHHHHHHGGGEEEEEEEEECCSTTHHHH---HHH
T ss_pred             EeccchHHHHHHcCCCEEEeCCCcchhhhhc----cCCCEEEECCCcHHHHHHHHhccCCCEEEEeCCCCchhh---hhh
Confidence            9987778999999999999987765 22211    579999999999888999999999999999986543321   223


Q ss_pred             hhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          216 LTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      +..++.++.++......++++++++++++|++++.++++|+++++++||+.+.+++..||+|+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  320 (321)
T 3tqh_A          256 AKQKHRRAFGLLKQFNIEELHYLGKLVSEDKLRIEISRIFQLSEAVTAHELLETGHVRGKLVFKV  320 (321)
T ss_dssp             HHHTTCEEECCCCCCCHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             hhhcceEEEEEecCCCHHHHHHHHHHHHCCCcccccccEEcHHHHHHHHHHHHcCCCCceEEEEe
Confidence            44566777664445578899999999999999999999999999999999999999999999975

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=9.9e-49  Score=332.78  Aligned_cols=273  Identities=24%  Similarity=0.351  Sum_probs=232.8

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +++|.|+|+++||+|||.+++||++|+..+.|..+.  +..+|.++|||++|+|+++|++|++|++||+|+++.   ..|
T Consensus        46 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~---~~G  120 (353)
T 4dup_A           46 GKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPP--PKDASPILGLELSGEIVGVGPGVSGYAVGDKVCGLA---NGG  120 (353)
T ss_dssp             EEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCC--CTTSCSSSCCEEEEEEEEECTTCCSCCTTCEEEEEC---SSC
T ss_pred             EeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC--CCCCCCccccccEEEEEEECCCCCCCCCCCEEEEec---CCC
Confidence            578899999999999999999999999999987652  235789999999999999999999999999999875   579


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEec
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCG  139 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~  139 (280)
                      +|+||+++|++.++++|+++++++||+++.+++|||+++.+.++                      +++..|++|+++++
T Consensus       121 ~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~  200 (353)
T 4dup_A          121 AYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAG  200 (353)
T ss_dssp             CSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence            99999999999999999999999999999999999999965543                      88899999999995


Q ss_pred             -CCcHHHHHhcCCCeeecCCCCC-cc-cccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHH-HHHhh
Q 048785          140 -ARNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLT-FAWQK  215 (280)
Q Consensus       140 -~~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~-~~~~~  215 (280)
                       +++.+.++++|++.++++++.+ .+ ..+.+ ++++|++|||+|++.+..++++++++|+++.+|........ ++...
T Consensus       201 ~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~-~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~  279 (353)
T 4dup_A          201 STGKCEACERLGAKRGINYRSEDFAAVIKAET-GQGVDIILDMIGAAYFERNIASLAKDGCLSIIAFLGGAVAEKVNLSP  279 (353)
T ss_dssp             SHHHHHHHHHHTCSEEEETTTSCHHHHHHHHH-SSCEEEEEESCCGGGHHHHHHTEEEEEEEEECCCTTCSEEEEEECHH
T ss_pred             CHHHHHHHHhcCCCEEEeCCchHHHHHHHHHh-CCCceEEEECCCHHHHHHHHHHhccCCEEEEEEecCCCcccCCCHHH
Confidence             4789999999999999988766 22 23334 77899999999999899999999999999999865433222 33445


Q ss_pred             hhccceeeEEEEEcCCH---------HHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          216 LTFSKKQLVPLLVIPKG---------ENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       216 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      +..++.++.+.......         +.++++++++++|+++++++++|+++++++||+.+.+++..||+|+++
T Consensus       280 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~~~~~~gKvvl~~  353 (353)
T 4dup_A          280 IMVKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTVAPVIHKVFAFEDVADAHRLLEEGSHVGKVMLTV  353 (353)
T ss_dssp             HHHTTCEEEECCSTTSCHHHHHHHHHHHHHHTHHHHHHTSSCCCEEEEEEGGGHHHHHHHHHHTCCSSEEEEEC
T ss_pred             HHhcCceEEEEeccccchhhhHHHHHHHHHHHHHHHHCCCccCCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            56677777776542221         127889999999999999999999999999999999999999999975

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=9.9e-48  Score=326.54  Aligned_cols=273  Identities=20%  Similarity=0.274  Sum_probs=232.2

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe------
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI------   74 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~------   74 (280)
                      ++|+|+|+|+|+||||||.|+|||++|+++++|.++    ..+|.++|||++|+|+++|++|+.|++||||++.      
T Consensus        16 l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~----~~~p~i~GhE~aG~V~~vG~~V~~~~~GdrV~~~~~~~~~   91 (348)
T 4eez_A           16 LVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFG----NKAGTVLGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGC   91 (348)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTC----CCTTCBCCSEEEEEEEEECTTCCSCCTTCEEEEESEEECC
T ss_pred             EEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCC----CCCCcccceeEEEEEEEECceeeecccCCeEeeccccccc
Confidence            368899999999999999999999999999998764    3688999999999999999999999999999763      


Q ss_pred             -------------------ecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------
Q 048785           75 -------------------LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------  125 (280)
Q Consensus        75 -------------------~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------  125 (280)
                                         .+...+|+|+||+.+|++.++++|+++++++||+++++++|||+++.....          
T Consensus        92 g~~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~G  171 (348)
T 4eez_A           92 GHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFG  171 (348)
T ss_dssp             SSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             CccccccCCcccccccccccccccCCcceeeccccccceeecCCCCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEc
Confidence                               122457999999999999999999999999999999999999999954311          


Q ss_pred             ----------hhhh-CCCEEEEEecC-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCC-cccccc
Q 048785          126 ----------LAKL-GNSHVTATCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIP-WSTFEP  190 (280)
Q Consensus       126 ----------la~~-~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~  190 (280)
                                +++. .|++||+++++ +|.++++++|+++++|+++.+  ....+.+++.++|.+++|+++.. +..+++
T Consensus       172 aG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~  251 (348)
T 4eez_A          172 AGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVCAVARIAFEQAVA  251 (348)
T ss_dssp             CSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEECCSCHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEeccCcchhheehe
Confidence                      5554 46799999965 789999999999999998877  33455678889999999999865 889999


Q ss_pred             cccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcC
Q 048785          191 NLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADG  270 (280)
Q Consensus       191 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~  270 (280)
                      +++++|+++.+|..... ..++...+.++++++.+.. ..++++++++++++++|+++|.+ ++|+|+++++||+.+.++
T Consensus       252 ~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~gs~-~~~~~~~~~~~~l~~~g~i~p~~-~~~~l~~~~~A~~~l~~g  328 (348)
T 4eez_A          252 SLKPMGKMVAVAVPNTE-MTLSVPTVVFDGVEVAGSL-VGTRLDLAEAFQFGAEGKVKPIV-ATRKLEEINDIIDEMKAG  328 (348)
T ss_dssp             TEEEEEEEEECCCCSCE-EEECHHHHHHSCCEEEECC-SCCHHHHHHHHHHHHTTSCCCCE-EEECGGGHHHHHHHHHTT
T ss_pred             eecCCceEEEEeccCCC-CccCHHHHHhCCeEEEEEe-cCCHHHHHHHHHHHHcCCCEEEE-EEEeHHHHHHHHHHHHCC
Confidence            99999999999855432 2233445667888888765 45788999999999999999765 689999999999999999


Q ss_pred             CCcCcEEEeC
Q 048785          271 HATGKIILEP  280 (280)
Q Consensus       271 ~~~gkvvi~~  280 (280)
                      +..||+||++
T Consensus       329 ~~~GKvVl~~  338 (348)
T 4eez_A          329 KIEGRMVIDF  338 (348)
T ss_dssp             CCSSEEEEEC
T ss_pred             CCccEEEEEc
Confidence            9999999975

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=5.5e-48  Score=326.86  Aligned_cols=272  Identities=25%  Similarity=0.294  Sum_probs=228.0

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCC
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSG   80 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   80 (280)
                      ++|+|.|+|+++||+|||.++|||++|+.++.|..+.  ...+|.++|||++|+|+++|++++ |++||+|+++.   ..
T Consensus        38 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~v~G~E~~G~V~~vG~~v~-~~vGDrV~~~~---~~  111 (342)
T 4eye_A           38 YTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQL--KMEPPFVPGIETAGVVRSAPEGSG-IKPGDRVMAFN---FI  111 (342)
T ss_dssp             EEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSS--CCCSSBCCCSEEEEEEEECCTTSS-CCTTCEEEEEC---SS
T ss_pred             EEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC--CCCCCCccceeEEEEEEEECCCCC-CCCCCEEEEec---CC
Confidence            3578899999999999999999999999999987642  236789999999999999999999 99999999874   57


Q ss_pred             CcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEe
Q 048785           81 GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATC  138 (280)
Q Consensus        81 g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~  138 (280)
                      |+|+||+.+|++.++++|+++++++||+++.+++|||+++.+.++                      +|+..|++|++++
T Consensus       112 G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~  191 (342)
T 4eye_A          112 GGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVV  191 (342)
T ss_dssp             CCSBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CcceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEe
Confidence            999999999999999999999999999999999999999965543                      8889999999999


Q ss_pred             c-CCcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhh
Q 048785          139 G-ARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQK  215 (280)
Q Consensus       139 ~-~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~  215 (280)
                      + +++.++++++|++.+++++ .+  ....+.+.++++|++|||+|++.+..++++++++|+++.+|........+....
T Consensus       192 ~~~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~  270 (342)
T 4eye_A          192 NRTAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFAAGGIPTIKVNR  270 (342)
T ss_dssp             SSGGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEEEEEESCC--CHHHHHHTEEEEEEEEEC----------CCCC
T ss_pred             CCHHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCceEEEECCchhHHHHHHHhhcCCCEEEEEEccCCCCCccCHHH
Confidence            6 5889999999999999987 44  233445667789999999999999999999999999999986554444455566


Q ss_pred             hhccceeeEEEEEcC--------CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          216 LTFSKKQLVPLLVIP--------KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       216 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      +..++.++.++....        ..+.++++++++++| ++++++++|+++++++||+.+.+++..||+|+++
T Consensus       271 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~P  342 (342)
T 4eye_A          271 LLLRNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEG-MRPPVSARIPLSEGRQALQDFADGKVYGKMVLVP  342 (342)
T ss_dssp             GGGTTCEEEECCHHHHHHHCTTHHHHHHHHHHHHHHTT-CCCCEEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             HhhcCCEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcC-CCCCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            677888888765311        135689999999999 9999999999999999999999999999999975

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=4.7e-48  Score=324.03  Aligned_cols=265  Identities=20%  Similarity=0.254  Sum_probs=214.5

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +++|.|+|+++||+||+.+++||++|+.++.|..+.   ..+|.++|||++|+|+++|++|++|++||||++..+....|
T Consensus        20 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~G   96 (315)
T 3goh_A           20 NSVDIPALAADDILVQNQAIGINPVDWKFIKANPIN---WSNGHVPGVDGAGVIVKVGAKVDSKMLGRRVAYHTSLKRHG   96 (315)
T ss_dssp             EEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTC---CCTTCCCCSEEEEEEEEECTTSCGGGTTCEEEEECCTTSCC
T ss_pred             EecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCc---CCCCCEeeeeeEEEEEEeCCCCCCCCCCCEEEEeCCCCCCc
Confidence            578899999999999999999999999999988752   36889999999999999999999999999999987666689


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCCEEEEEecC
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNSHVTATCGA  140 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~~Vi~~~~~  140 (280)
                      +|+||+.+|++.++++|+++++++||+++.+++|||+++ +.++                     +|+.+|++|++++++
T Consensus        97 ~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~  175 (315)
T 3goh_A           97 SFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVSAS  175 (315)
T ss_dssp             SSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             ccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECh
Confidence            999999999999999999999999999999999999999 5544                     889999999999966


Q ss_pred             CcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchh-hHHHHHhhhhcc
Q 048785          141 RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSA-MLTFAWQKLTFS  219 (280)
Q Consensus       141 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~-~~~~~~~~~~~~  219 (280)
                      ++.++++++|++++++  +  .+.+    ++++|++|||+|++.+..++++++++|+++.++..... ......+.+.++
T Consensus       176 ~~~~~~~~lGa~~v~~--d--~~~v----~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  247 (315)
T 3goh_A          176 LSQALAAKRGVRHLYR--E--PSQV----TQKYFAIFDAVNSQNAAALVPSLKANGHIICIQDRIPAPIDPAFTRTISYH  247 (315)
T ss_dssp             CCHHHHHHHTEEEEES--S--GGGC----CSCEEEEECC-------TTGGGEEEEEEEEEECCC----------CCSEEE
T ss_pred             hhHHHHHHcCCCEEEc--C--HHHh----CCCccEEEECCCchhHHHHHHHhcCCCEEEEEeCCCCccccchhhhcceee
Confidence            8999999999999984  2  2222    67899999999998889999999999999999754322 222223344444


Q ss_pred             ceeeEEEEEcCC-------HHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          220 KKQLVPLLVIPK-------GENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       220 ~~~~~~~~~~~~-------~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ++.+.++....+       .+.++++++++++|+++++++++|+|+++++||+.+.  ...||+|+++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~gKvvi~~  313 (315)
T 3goh_A          248 EIALGALHDFGDRQDWQILMQQGEALLTLIAQGKMEIAAPDIFRFEQMIEALDHSE--QTKLKTVLTL  313 (315)
T ss_dssp             EECGGGHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCCCCEEEEGGGHHHHHHHHH--HHCCCEEEES
T ss_pred             EEEeecccccCChhHHHHHHHHHHHHHHHHHCCCcccccceEecHHHHHHHHHHHH--hcCCcEEEEe
Confidence            444443321112       2357899999999999999999999999999999998  6678999875

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=9.7e-48  Score=324.64  Aligned_cols=271  Identities=22%  Similarity=0.285  Sum_probs=231.6

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +++|.|+|+++||+|||.++|||++|+.+..|..+    ..+|.++|||++|+|+++|++|++|++||+|+++    ..|
T Consensus        26 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~----~~~P~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~----~~G   97 (334)
T 3qwb_A           26 EDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYP----CEKPYVLGREASGTVVAKGKGVTNFEVGDQVAYI----SNS   97 (334)
T ss_dssp             EEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSC----CCSSEECCSEEEEEEEEECTTCCSCCTTCEEEEE----CSS
T ss_pred             EeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCC----CCCCCccccceEEEEEEECCCCCCCCCCCEEEEe----eCC
Confidence            57889999999999999999999999999998764    3678999999999999999999999999999987    489


Q ss_pred             cceeEEeec-ccccccCCCCCChhh---hcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEE
Q 048785           82 GLAEFAMVK-ESLTASRPLEVSAAE---GAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVT  135 (280)
Q Consensus        82 ~~~~~~~v~-~~~~~~~p~~~~~~~---aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi  135 (280)
                      +|+||+.+| ++.++++|+++++++   +|++++.++|||+++.+..+                      +++..|++|+
T Consensus        98 ~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi  177 (334)
T 3qwb_A           98 TFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTI  177 (334)
T ss_dssp             CSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEE
T ss_pred             cceEEEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            999999999 999999999999999   88899999999999976533                      8889999999


Q ss_pred             EEecC-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHH
Q 048785          136 ATCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFA  212 (280)
Q Consensus       136 ~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~  212 (280)
                      +++++ ++.++++++|++.++++++.+  ....+.+.++++|++|||+|+..++.++++++++|+++.+|........++
T Consensus       178 ~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~  257 (334)
T 3qwb_A          178 AVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGKDTFEISLAALKRKGVFVSFGNASGLIPPFS  257 (334)
T ss_dssp             EEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCGGGGHHHHHHHEEEEEEEEECCCTTCCCCCBC
T ss_pred             EEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCChHHHHHHHHHhccCCEEEEEcCCCCCCCCcc
Confidence            99975 788999999999999988766  233445667789999999999889999999999999999986543322334


Q ss_pred             HhhhhccceeeEEEEEc---CCH----HHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          213 WQKLTFSKKQLVPLLVI---PKG----ENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       213 ~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ...+..+++++.+....   ...    +.++++++++++|++++.++++|+++++++||+.+.+++..||+|+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  332 (334)
T 3qwb_A          258 ITRLSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIKIYKTYPLRDYRTAAADIESRKTVGKLVLEI  332 (334)
T ss_dssp             GGGGTTTTCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCCCBEEEEEC
T ss_pred             hhhhhhCceEEEEEEeccccCCHHHHHHHHHHHHHHHHCCCccCceeeEEcHHHHHHHHHHHHhCCCceEEEEec
Confidence            45556677766653321   122    345789999999999999999999999999999999999999999975

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.4e-47  Score=322.29  Aligned_cols=272  Identities=24%  Similarity=0.287  Sum_probs=220.1

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +++|.|+|+++||+|||.+++||++|+.++.|..+.  ...+|.++|||++|+|+++|+++++|++||+|+++.   ..|
T Consensus        21 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~---~~G   95 (349)
T 4a27_A           21 FRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDN--PPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFV---NYN   95 (349)
T ss_dssp             EEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS--CCCSSBCCCSEEEEEEEEECTTCCSCCTTCEEEEEC---SSC
T ss_pred             EecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCC--CCCCCccccceeEEEEEEeCCCCCCCCCCCEEEEec---CCC
Confidence            577899999999999999999999999999998642  246889999999999999999999999999999875   579


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCC-CEEEEEe
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGN-SHVTATC  138 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G-~~Vi~~~  138 (280)
                      +|+||+.+|++.++++|+++++++||+++++++|||+++.+.++                      +|+.+| ++|++++
T Consensus        96 ~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~  175 (349)
T 4a27_A           96 AWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA  175 (349)
T ss_dssp             CSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE
T ss_pred             cceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC
Confidence            99999999999999999999999999999999999999966543                      788885 5999999


Q ss_pred             cCCcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhh---------
Q 048785          139 GARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAM---------  208 (280)
Q Consensus       139 ~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~---------  208 (280)
                      ++++.+.++ +|++++++ ++.+ .+.+....++++|++|||+|++.+..++++++++|+++.+|......         
T Consensus       176 ~~~~~~~~~-~ga~~~~~-~~~~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~  253 (349)
T 4a27_A          176 STFKHEAIK-DSVTHLFD-RNADYVQEVKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSSNMVTGETKSFFSF  253 (349)
T ss_dssp             CGGGHHHHG-GGSSEEEE-TTSCHHHHHHHHCTTCEEEEEEECC-------CTTEEEEEEEEEEC---------------
T ss_pred             CHHHHHHHH-cCCcEEEc-CCccHHHHHHHhcCCCceEEEECCCchhHHHHHHHhhcCCEEEEECCCccccccccccccc
Confidence            878888888 99999998 4444 23333334678999999999988899999999999999998543110         


Q ss_pred             -------HHHHHhhhhccceeeEEEEEc-----C-----CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCC
Q 048785          209 -------LTFAWQKLTFSKKQLVPLLVI-----P-----KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGH  271 (280)
Q Consensus       209 -------~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~  271 (280)
                             ..+....+..++..+.++...     .     ..++++++++++++|+++++++++|+++++++||+.+.+++
T Consensus       254 ~~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~~~~  333 (349)
T 4a27_A          254 AKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKPVVDSLWALEEVKEAMQRIHDRG  333 (349)
T ss_dssp             ----------CHHHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHHHTTSCCCCEEEEECGGGHHHHHHHHHTTC
T ss_pred             ccccccccccCHHHHhhcCceEEEEeehheeccccchHHHHHHHHHHHHHHHCCCccccccceECHHHHHHHHHHHHhCC
Confidence                   113334445566677665431     0     16789999999999999999999999999999999999999


Q ss_pred             CcCcEEEeC
Q 048785          272 ATGKIILEP  280 (280)
Q Consensus       272 ~~gkvvi~~  280 (280)
                      ..||+|+++
T Consensus       334 ~~GKvvi~~  342 (349)
T 4a27_A          334 NIGKLILDV  342 (349)
T ss_dssp             CSSEEEEET
T ss_pred             CCceEEEec
Confidence            999999975

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=1.7e-47  Score=321.87  Aligned_cols=274  Identities=24%  Similarity=0.235  Sum_probs=227.5

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +|+|.|+|+++||+|||.+++||++|+.++.|..+.   ..+|.++|||++|+|+++|+++++|++||+|++...  ..|
T Consensus        19 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~--~~G   93 (325)
T 3jyn_A           19 VDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPA---PFLPSGLGAEGAGVVEAVGDEVTRFKVGDRVAYGTG--PLG   93 (325)
T ss_dssp             EEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC---SSSSBCCCCCEEEEEEEECTTCCSCCTTCEEEESSS--SSC
T ss_pred             eecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC---CCCCCCCCceeEEEEEEECCCCCCCCCCCEEEEecC--CCc
Confidence            578899999999999999999999999999997652   367899999999999999999999999999987642  479


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEec
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCG  139 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~  139 (280)
                      +|+||+.+|++.++++|+++++++||++++.++|||+++.+.++                      +++..|++|+++++
T Consensus        94 ~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~  173 (325)
T 3jyn_A           94 AYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVS  173 (325)
T ss_dssp             CSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEES
T ss_pred             cccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            99999999999999999999999999999999999999976543                      88889999999996


Q ss_pred             C-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhh
Q 048785          140 A-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKL  216 (280)
Q Consensus       140 ~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  216 (280)
                      + ++.+.++++|+++++++++.+  ....+.+.++++|++|||+|+..+..++++++++|+++.+|........++...+
T Consensus       174 ~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~  253 (325)
T 3jyn_A          174 SPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGNASGPVSGVNLGIL  253 (325)
T ss_dssp             SHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCGGGHHHHHTTEEEEEEEEECCCTTCCCCSCCTHHH
T ss_pred             CHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCChHHHHHHHHHhcCCCEEEEEecCCCCCCCCCHHHH
Confidence            4 789999999999999988766  2344556677999999999998899999999999999999854432112222222


Q ss_pred             hcc-ceeeEEEEE---cCC----HHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          217 TFS-KKQLVPLLV---IPK----GENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       217 ~~~-~~~~~~~~~---~~~----~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ..+ .+.+.+...   ...    .+.++++++++++|++++.++++|+++++++||+.+.+++..||+|+++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl~p  325 (325)
T 3jyn_A          254 AQKDSVYVTRPTLGSYANNAQNLQTMADELFDMLASGKLKVDGIEQYALKDAAKAQIELSARRTTGSTILIP  325 (325)
T ss_dssp             HHTTSCEEECCCHHHHSCSTTHHHHHHHHHHHHHHTTSSCCCCCEEEEGGGHHHHHHHHHTTCCCSCEEEEC
T ss_pred             hhcCcEEEEeeeeeeecCCHHHHHHHHHHHHHHHHCCCeeCccccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            223 223322111   112    2345689999999999999999999999999999999999999999975

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=2e-48  Score=330.60  Aligned_cols=273  Identities=21%  Similarity=0.237  Sum_probs=225.8

Q ss_pred             CCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCC-CCCCCCCEEEEeecCCCCCcc
Q 048785            5 PVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEV-KNFKAGYNVVAILNHFSGGGL   83 (280)
Q Consensus         5 ~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v-~~~~~Gd~V~~~~~~~~~g~~   83 (280)
                      |.|+|+++||+|||.+++||++|+..+.|..+.  ...+|.++|||++|+|+++|++| ++|++||+|++..+....|+|
T Consensus        43 ~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~~~p~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~g~~~~G~~  120 (349)
T 3pi7_A           43 AVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQ--PRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNWGSW  120 (349)
T ss_dssp             ECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSS--CBCTTSBCCSEEEEEEEEECSSHHHHHHTTCEEEEECTTSSCCSS
T ss_pred             CCCCCCCCeEEEEEEEecCCHHHHHHhcccCCC--CCCCCCCccceEEEEEEEECCCccCCCCCCCEEEEeccCCCCccc
Confidence            999999999999999999999999999987642  23689999999999999999999 999999999998777778999


Q ss_pred             eeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCCEEEEEec-CC
Q 048785           84 AEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNSHVTATCG-AR  141 (280)
Q Consensus        84 ~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~~Vi~~~~-~~  141 (280)
                      +||+++|++.++++|+++++++||++++.++|||+++.....                     +|+..|++|+++++ ++
T Consensus       121 aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~  200 (349)
T 3pi7_A          121 AEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDIVKQEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDE  200 (349)
T ss_dssp             BSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHHHHHHHHHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGG
T ss_pred             eeeEeechHHeEECCCCCCHHHHhhccccHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            999999999999999999999999999999999977643211                     88899999999995 58


Q ss_pred             cHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHH-hhhhc
Q 048785          142 NIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAW-QKLTF  218 (280)
Q Consensus       142 ~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~-~~~~~  218 (280)
                      +.++++++|+++++++++.+  ....+.+.++++|++|||+|++.+..++++++++|+++.+|........+.. ..+..
T Consensus       201 ~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~  280 (349)
T 3pi7_A          201 QIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRLDPDATVIREPGQLIF  280 (349)
T ss_dssp             GHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCHHHHHHHHHHSCTTCEEEECCCSCCSCCCCSCTHHHHH
T ss_pred             HHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCChhHHHHHhhhcCCCEEEEEeccCCCCCCCCchhhhhc
Confidence            99999999999999987766  2233344556899999999998888999999999999999854433233333 45566


Q ss_pred             cceeeEEEEEcC--------CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          219 SKKQLVPLLVIP--------KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       219 ~~~~~~~~~~~~--------~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ++.++.++....        ..+.++++++++++|+++++++++|+++++++||+.+. +...||+|+++
T Consensus       281 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~-~~~~gKvvl~p  349 (349)
T 3pi7_A          281 QHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRWSTDVTAVVPLAEAIAWVPAEL-TKPNGKVFIRP  349 (349)
T ss_dssp             SCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTTTSSCCC-CCEEEEHHHHHHHHHHHH-TSSSSCEEEEC
T ss_pred             cccEEEEEEehhhhhhCcHHHHHHHHHHHHHHHcCCcccccceEEcHHHHHHHHHHHh-CCCCceEEEeC
Confidence            777777754311        14678889999999999999999999999999999554 45679999975

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=1.6e-47  Score=324.73  Aligned_cols=275  Identities=21%  Similarity=0.247  Sum_probs=232.9

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-----   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----   75 (280)
                      ++|+|.|+|+++||+|||.+++||++|+.++.|..+. .+..+|.++|||++|+|+++|++|++|++||+|++..     
T Consensus        15 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg   93 (345)
T 3jv7_A           15 VVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQ-YAYGLPLTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWGCG   93 (345)
T ss_dssp             EEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTT-CCSCSSEECCSEEEEEEEEECTTCCSCCTTCEEEECCSCCCS
T ss_pred             EEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCc-cCCCCCcccCcccEEEEEEECCCCCCCCCCCEEEEecCCCCC
Confidence            3578999999999999999999999999999987542 2246899999999999999999999999999999842     


Q ss_pred             ------------------------cCCCCCcceeEEeec-ccccccCCCCCChhhhcccchhHHHHHHHHHhh-hh----
Q 048785           76 ------------------------NHFSGGGLAEFAMVK-ESLTASRPLEVSAAEGAGLPLAGLTALEALTQS-AG----  125 (280)
Q Consensus        76 ------------------------~~~~~g~~~~~~~v~-~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~-~~----  125 (280)
                                              +....|+|+||+++| .+.++++|+ +++++||+++++++|||+++.+. .+    
T Consensus        94 ~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~~p~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g  172 (345)
T 3jv7_A           94 ACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGD-LDPVAAAPLTDAGLTPYHAISRVLPLLGPG  172 (345)
T ss_dssp             SSHHHHTTCGGGCSSHHHHTCCCBTTTBCCSSBSEEEESCGGGEEECTT-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTT
T ss_pred             CChHHHCcCcCcCccccccccccCCcCCCceeeEEEEecchhceEeCCC-CCHHHhhhhhhhHHHHHHHHHHhccCCCCC
Confidence                                    233579999999999 999999999 99999999999999999999763 22    


Q ss_pred             -----------------hhhhC-CCEEEEEec-CCcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCC-C
Q 048785          126 -----------------LAKLG-NSHVTATCG-ARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGI-P  184 (280)
Q Consensus       126 -----------------la~~~-G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~-~  184 (280)
                                       +|+.+ |++|+++++ +++.++++++|+++++++++.. ....+.+.++++|++|||+|++ .
T Consensus       173 ~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~~~  252 (345)
T 3jv7_A          173 STAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQST  252 (345)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCHHH
Confidence                             88888 669999985 4889999999999999987632 2344456677999999999997 6


Q ss_pred             cccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHH
Q 048785          185 WSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAW  264 (280)
Q Consensus       185 ~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~  264 (280)
                      ++.++++++++|+++.+|........+++ .+..++.++.+.. ....++++++++++++|++++ ++++|+++++++||
T Consensus       253 ~~~~~~~l~~~G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g~~-~~~~~~~~~~~~l~~~g~l~~-~~~~~~l~~~~~A~  329 (345)
T 3jv7_A          253 IDTAQQVVAVDGHISVVGIHAGAHAKVGF-FMIPFGASVVTPY-WGTRSELMEVVALARAGRLDI-HTETFTLDEGPAAY  329 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSCCTTCCEEEST-TTSCTTCEEECCC-SCCHHHHHHHHHHHHTTCCCC-CEEEECSTTHHHHH
T ss_pred             HHHHHHHHhcCCEEEEECCCCCCCCCcCH-HHHhCCCEEEEEe-cCCHHHHHHHHHHHHcCCCce-EEEEEcHHHHHHHH
Confidence            99999999999999999865542222233 5567788887765 456789999999999999998 55899999999999


Q ss_pred             HHHhcCCCcCcEEEeC
Q 048785          265 AKGADGHATGKIILEP  280 (280)
Q Consensus       265 ~~~~~~~~~gkvvi~~  280 (280)
                      +.+.+++..||+||++
T Consensus       330 ~~~~~~~~~Gkvvv~p  345 (345)
T 3jv7_A          330 RRLREGSIRGRGVVVP  345 (345)
T ss_dssp             HHHHHTCCSSEEEECC
T ss_pred             HHHHcCCCceeEEeCC
Confidence            9999999999999975

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=8.8e-47  Score=321.52  Aligned_cols=274  Identities=22%  Similarity=0.297  Sum_probs=227.9

Q ss_pred             CCCCCCCC-CCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec---
Q 048785            1 HVHVPVPT-PRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN---   76 (280)
Q Consensus         1 ~~~~~~~~-~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~---   76 (280)
                      ++|+|.|+ |+++||+|||.+++||++|+.++.|..+......+|.++|||++|+|+++|++|++|++||+|++...   
T Consensus        30 ~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~C  109 (359)
T 1h2b_A           30 IEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTD  109 (359)
T ss_dssp             EECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCBCC
T ss_pred             EEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECCCCCCCCCCCEEEeCCCCCC
Confidence            36789999 99999999999999999999999886531001257899999999999999999999999999977521   


Q ss_pred             ---------------------CCCCCcceeEEeecccccccCCCCCChhhhc---ccchhHHHHHHHHHhh-hh------
Q 048785           77 ---------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGA---GLPLAGLTALEALTQS-AG------  125 (280)
Q Consensus        77 ---------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa---~~~~~~~~a~~~l~~~-~~------  125 (280)
                                           ....|+|+||+.+|++.++++|+++++++||   +++++++|||+++.+. ++      
T Consensus       110 g~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~  189 (359)
T 1h2b_A          110 GTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAY  189 (359)
T ss_dssp             SCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCE
T ss_pred             CCChhhhCcCcccCCCccccccCCCCcccceEEechHhEEECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCE
Confidence                                 1246999999999999999999999999999   7888999999999763 33      


Q ss_pred             ---------------hhhhC-CCEEEEEecC-CcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCC---C
Q 048785          126 ---------------LAKLG-NSHVTATCGA-RNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGI---P  184 (280)
Q Consensus       126 ---------------la~~~-G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~---~  184 (280)
                                     +|+.+ |++|++++++ +++++++++|+++++|+++.. ....+.+.++++|++|||+|++   .
T Consensus       190 VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~v~~~~~g~g~Dvvid~~G~~~~~~  269 (359)
T 1h2b_A          190 VAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATVD  269 (359)
T ss_dssp             EEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCEEEeccchHHHHHHHHhCCCCCcEEEECCCCchHHH
Confidence                           88888 9999999964 789999999999999987651 1122334566899999999997   7


Q ss_pred             cccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHH
Q 048785          185 WSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAW  264 (280)
Q Consensus       185 ~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~  264 (280)
                      +..++++  ++|+++.+|.....  .++...+..++.++.+.. ....++++++++++++|++++.+ ++|+|+++++||
T Consensus       270 ~~~~~~~--~~G~~v~~g~~~~~--~~~~~~~~~~~~~i~g~~-~~~~~~~~~~~~l~~~g~l~~~i-~~~~l~~~~~A~  343 (359)
T 1h2b_A          270 YTPYLLG--RMGRLIIVGYGGEL--RFPTIRVISSEVSFEGSL-VGNYVELHELVTLALQGKVRVEV-DIHKLDEINDVL  343 (359)
T ss_dssp             HGGGGEE--EEEEEEECCCSSCC--CCCHHHHHHTTCEEEECC-SCCHHHHHHHHHHHHTTSCCCCE-EEEEGGGHHHHH
T ss_pred             HHHHhhc--CCCEEEEEeCCCCC--CCCHHHHHhCCcEEEEec-CCCHHHHHHHHHHHHcCCCcceE-EEEeHHHHHHHH
Confidence            8888888  99999999854432  233445566788887754 34678899999999999999988 999999999999


Q ss_pred             HHHhcCCCcCcEEEeC
Q 048785          265 AKGADGHATGKIILEP  280 (280)
Q Consensus       265 ~~~~~~~~~gkvvi~~  280 (280)
                      +.+.+++..||+|+++
T Consensus       344 ~~~~~~~~~gKvvv~~  359 (359)
T 1h2b_A          344 ERLEKGEVLGRAVLIP  359 (359)
T ss_dssp             HHHHTTCCSSEEEEEC
T ss_pred             HHHHcCCCceEEEeeC
Confidence            9999998889999975

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=8.5e-47  Score=319.62  Aligned_cols=273  Identities=21%  Similarity=0.281  Sum_probs=229.9

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe------
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI------   74 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~------   74 (280)
                      ++|+|.|+|+++||+|||.+++||++|+.++.|..+.  ...+|.++|||++|+|+++|++|++|++||+|+..      
T Consensus        17 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~c   94 (340)
T 3s2e_A           17 IDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPV--KPTLPFIPGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSAC   94 (340)
T ss_dssp             EEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSS--CCCSSBCCCSEEEEEEEEECSSCCSCCTTCEEEEESEEECC
T ss_pred             EEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCC--CCCCCcccCCcceEEEEEECCCCCcCCCCCEEEecCCCCCC
Confidence            3578999999999999999999999999999997652  23689999999999999999999999999999532      


Q ss_pred             -------------------ecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------
Q 048785           75 -------------------LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------  125 (280)
Q Consensus        75 -------------------~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------  125 (280)
                                         .+...+|+|+||+.+|++.++++|+++++++||++++++.|||+++.. .+          
T Consensus        95 g~C~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~  173 (340)
T 3s2e_A           95 GYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKV-TDTRPGQWVVIS  173 (340)
T ss_dssp             SSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTSCHHHHGGGGTHHHHHHHHHHT-TTCCTTSEEEEE
T ss_pred             CCChHHhCcCcccCccccccCCCCCCcceeEEEechHHEEECCCCCCHHHhhcccchhHHHHHHHHH-cCCCCCCEEEEE
Confidence                               223457999999999999999999999999999999999999999943 33          


Q ss_pred             -----------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCC-Cccccccc
Q 048785          126 -----------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGI-PWSTFEPN  191 (280)
Q Consensus       126 -----------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~  191 (280)
                                 +|+.+|++|+++++ +++.++++++|+++++++++.+ .+.+..+.+ ++|++|||+|+. .++.++++
T Consensus       174 GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g-~~d~vid~~g~~~~~~~~~~~  252 (340)
T 3s2e_A          174 GIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIG-GAHGVLVTAVSPKAFSQAIGM  252 (340)
T ss_dssp             CCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHS-SEEEEEESSCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCC-CCCEEEEeCCCHHHHHHHHHH
Confidence                       89999999999996 4889999999999999998766 222222334 899999999864 58899999


Q ss_pred             ccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCC
Q 048785          192 LAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGH  271 (280)
Q Consensus       192 l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~  271 (280)
                      ++++|+++.+|..... ..+....+..+++++.+.. ....++++++++++++|++++.+ +.|+|+++++||+.+.+++
T Consensus       253 l~~~G~iv~~G~~~~~-~~~~~~~~~~~~~~i~g~~-~~~~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~~~~  329 (340)
T 3s2e_A          253 VRRGGTIALNGLPPGD-FGTPIFDVVLKGITIRGSI-VGTRSDLQESLDFAAHGDVKATV-STAKLDDVNDVFGRLREGK  329 (340)
T ss_dssp             EEEEEEEEECSCCSSE-EEEEHHHHHHTTCEEEECC-SCCHHHHHHHHHHHHTTSCCCCE-EEECGGGHHHHHHHHHTTC
T ss_pred             hccCCEEEEeCCCCCC-CCCCHHHHHhCCeEEEEEe-cCCHHHHHHHHHHHHhCCCCceE-EEEeHHHHHHHHHHHHcCC
Confidence            9999999999865432 2223344556777887765 45688999999999999999864 5789999999999999999


Q ss_pred             CcCcEEEeC
Q 048785          272 ATGKIILEP  280 (280)
Q Consensus       272 ~~gkvvi~~  280 (280)
                      ..||+|+++
T Consensus       330 ~~Gkvvv~~  338 (340)
T 3s2e_A          330 VEGRVVLDF  338 (340)
T ss_dssp             CCSEEEEEC
T ss_pred             CceEEEEec
Confidence            999999975

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=4.5e-47  Score=321.85  Aligned_cols=271  Identities=23%  Similarity=0.265  Sum_probs=227.8

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +++|.|+|+++||+|||.+++||++|+..+.|..     ..+|.++|||++|+|+++|++|++|++||+|++.......|
T Consensus        23 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~-----~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~G   97 (346)
T 3fbg_A           23 FNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDV-----SKAPRVLGFDAIGVVESVGNEVTMFNQGDIVYYSGSPDQNG   97 (346)
T ss_dssp             EEECCCCCCTTEEEEEEEEEEECHHHHHHTTSCC-----SSSCBCCCCCEEEEEEEECTTCCSCCTTCEEEECCCTTSCC
T ss_pred             ccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCCC-----CCCCcCcCCccEEEEEEeCCCCCcCCCCCEEEEcCCCCCCc
Confidence            5789999999999999999999999999888873     26789999999999999999999999999999876555689


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhh----------h------------------hhhhCCCE
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA----------G------------------LAKLGNSH  133 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~----------~------------------la~~~G~~  133 (280)
                      +|+||+++|++.++++|+++++++||+++++++|||+++.+.+          +                  +|+..|++
T Consensus        98 ~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~  177 (346)
T 3fbg_A           98 SNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLR  177 (346)
T ss_dssp             SSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCE
T ss_pred             ceeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence            9999999999999999999999999999999999999996432          1                  88899999


Q ss_pred             EEEEecC-CcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCC-cccccccccCCcEEEEeCCCchhhHHH
Q 048785          134 VTATCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIP-WSTFEPNLAENGKVIDLTPTPSAMLTF  211 (280)
Q Consensus       134 Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~  211 (280)
                      |++++++ ++.++++++|+++++++++...+.+....++++|++|||+|++. ++.++++++++|+++.++.....   +
T Consensus       178 Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~~~~~~---~  254 (346)
T 3fbg_A          178 VITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAFEND---Q  254 (346)
T ss_dssp             EEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEEEEEEESSCCSSC---B
T ss_pred             EEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCchHHHHHHHHHhccCCEEEEECCCCCC---C
Confidence            9999974 88999999999999998753323333336678999999999865 68999999999999988753321   2


Q ss_pred             HHhhhhccceeeEEEEEcC-----------CHHHHHHHHHHHHCCCeeEecccee---cchhHHHHHHHHhcCCCcCcEE
Q 048785          212 AWQKLTFSKKQLVPLLVIP-----------KGENLVFLVKLLKEGKIKTLIDSKH---LLSKAEDAWAKGADGHATGKII  277 (280)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~g~~~~~~~~~~---~~~~~~~a~~~~~~~~~~gkvv  277 (280)
                      +...+..++.++.+.....           ..+.++++++++++|++++.++++|   +++++++||+.+.+++..||+|
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~g~~~GKvv  334 (346)
T 3fbg_A          255 DLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQPTTTKVIEGLTTENIYQAHQILESNTMIGKLV  334 (346)
T ss_dssp             CGGGGTTTTCEEEECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTSSCCCEEEEEESCCHHHHHHHHHHHHTTCCCSEEE
T ss_pred             ccccccccceEEEEEEEecccccchhhHHHHHHHHHHHHHHHHCCCEECCccceecCCCHHHHHHHHHHHhcCCcceEEE
Confidence            2334445666665533211           1366889999999999999988887   9999999999999999999999


Q ss_pred             EeC
Q 048785          278 LEP  280 (280)
Q Consensus       278 i~~  280 (280)
                      +++
T Consensus       335 l~~  337 (346)
T 3fbg_A          335 INL  337 (346)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            974

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=4e-46  Score=316.38  Aligned_cols=265  Identities=19%  Similarity=0.176  Sum_probs=224.9

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      +++|.|+|+++||+|||.+++||++|+.++.|..+.   ..+|.++|||++|+|+++|++|++|++||+|++..      
T Consensus        20 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg   96 (348)
T 3two_A           20 HDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKE---GIYPMIPGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCK   96 (348)
T ss_dssp             EEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSC---CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCS
T ss_pred             EEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCC---CCCCeecCcceeEEEEEECCCCCCCCCCCEEEEeCCcCCCC
Confidence            578899999999999999999999999999988653   36799999999999999999999999999997621      


Q ss_pred             ------------------cCC----------CCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh--
Q 048785           76 ------------------NHF----------SGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG--  125 (280)
Q Consensus        76 ------------------~~~----------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~--  125 (280)
                                        +..          ..|+|+||+++|++.++++|+++++++||++++++.|||+++.+. +  
T Consensus        97 ~C~~C~~g~~~~c~~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~-~~~  175 (348)
T 3two_A           97 ACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFS-KVT  175 (348)
T ss_dssp             CSHHHHTTCGGGCTTCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHHHT-TCC
T ss_pred             CChhHhCCCcccCcccccccccccccccCCcCCccccceEEechhhEEECCCCCCHHHhhhhhhhHHHHHHHHHhc-CCC
Confidence                              111          229999999999999999999999999999999999999999653 3  


Q ss_pred             -------------------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCC-C
Q 048785          126 -------------------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGI-P  184 (280)
Q Consensus       126 -------------------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~  184 (280)
                                         +|+.+|++|+++++ +++.++++++|+++++ . +.  ..+..    ++|++|||+|++ .
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~-~~--~~~~~----~~D~vid~~g~~~~  247 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFY-T-DP--KQCKE----ELDFIISTIPTHYD  247 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEE-S-SG--GGCCS----CEEEEEECCCSCCC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeec-C-CH--HHHhc----CCCEEEECCCcHHH
Confidence                               89999999999994 6899999999999998 2 21  12211    799999999998 7


Q ss_pred             cccccccccCCcEEEEeCCCc-hhhHHHHHhhhh-ccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHH
Q 048785          185 WSTFEPNLAENGKVIDLTPTP-SAMLTFAWQKLT-FSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAED  262 (280)
Q Consensus       185 ~~~~~~~l~~~g~~v~~g~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~  262 (280)
                      ++.++++++++|+++.+|... .....++...+. .++.++.+.. ....++++++++++++|++++.+ ++|+++++++
T Consensus       248 ~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~-~~~~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~  325 (348)
T 3two_A          248 LKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSL-IGGIKETQEMVDFSIKHNIYPEI-DLILGKDIDT  325 (348)
T ss_dssp             HHHHHTTEEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEEECC-SCCHHHHHHHHHHHHHTTCCCCE-EEECGGGHHH
T ss_pred             HHHHHHHHhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEEEEe-cCCHHHHHHHHHHHHhCCCCceE-EEEEHHHHHH
Confidence            999999999999999998665 322113334444 7888888765 45678899999999999999865 7999999999


Q ss_pred             HHHHHhcCCCcCcEEEeC
Q 048785          263 AWAKGADGHATGKIILEP  280 (280)
Q Consensus       263 a~~~~~~~~~~gkvvi~~  280 (280)
                      ||+.+.+++..||+|+++
T Consensus       326 A~~~~~~~~~~gKvVi~~  343 (348)
T 3two_A          326 AYHNLTHGKAKFRYVIDM  343 (348)
T ss_dssp             HHHHHHTTCCCSEEEEEG
T ss_pred             HHHHHHcCCCceEEEEec
Confidence            999999999999999974

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=1.1e-46  Score=319.10  Aligned_cols=276  Identities=26%  Similarity=0.414  Sum_probs=230.5

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee----c-
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL----N-   76 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~----~-   76 (280)
                      +++|.|+|+++||+|||.+++||++|+++..|..+.  ...+|.++|||++|+|+++|++|++|++||||+...    + 
T Consensus        18 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~   95 (343)
T 2eih_A           18 ADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASP--KLPLPHVLGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGR   95 (343)
T ss_dssp             EECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSST--TCCSSEECCSEEEEEEEEECSSCCSCCTTCEEEECCEECCSC
T ss_pred             EecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCC--CCCCCcccccceEEEEEEECCCCCCCCCCCEEEECCCCCccc
Confidence            578899999999999999999999999999886541  135789999999999999999999999999998421    1 


Q ss_pred             -------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh------------
Q 048785           77 -------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG------------  125 (280)
Q Consensus        77 -------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~------------  125 (280)
                                         ....|+|+||+.+|++.++++|+++++++||+++.++.|||+++.+.++            
T Consensus        96 c~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga  175 (343)
T 2eih_A           96 CERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAA  175 (343)
T ss_dssp             SHHHHTTCGGGCTTCEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECST
T ss_pred             chhhccCcccccccccccCcCCCccceeEEEeChHHeEECCCCCCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECC
Confidence                               2346999999999999999999999999999999999999999966432            


Q ss_pred             ----------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCCc--ccccCCCCCcccEEEECCCCCCcccccccc
Q 048785          126 ----------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPDG--AALKSPSGRKYDAVIHCARGIPWSTFEPNL  192 (280)
Q Consensus       126 ----------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l  192 (280)
                                +++..|++|++++++ ++.+.++++|++.++++++.+.  ...+.+.++++|++|||+|+..++.+++++
T Consensus       176 sg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l  255 (343)
T 2eih_A          176 GSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTGALYFEGVIKAT  255 (343)
T ss_dssp             TSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSCSSSHHHHHHHE
T ss_pred             CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCCHHHHHHHHHhh
Confidence                      788899999999965 7888888999999998876551  222334456899999999977789999999


Q ss_pred             cCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCC
Q 048785          193 AENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHA  272 (280)
Q Consensus       193 ~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~  272 (280)
                      +++|+++.+|........++...+..+++++.+.. ....++++++++++++|+++++++++|+|+++++||+.+.+++.
T Consensus       256 ~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~  334 (343)
T 2eih_A          256 ANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGST-MASKSRLFPILRFVEEGKLKPVVGQVLPLEAAAEGHRLLEERRV  334 (343)
T ss_dssp             EEEEEEEESSCCCSCCCCCCTTHHHHTTCEEEECC-SCCGGGHHHHHHHHHHTSSCCCEEEEEEGGGHHHHHHHHHTTCS
T ss_pred             ccCCEEEEEecCCCCcCccCHHHHHhCCcEEEEec-CccHHHHHHHHHHHHcCCCCCceeEEeeHHHHHHHHHHHHcCCC
Confidence            99999999986543221233344556777777654 34678899999999999999999999999999999999999888


Q ss_pred             cCcEEEeC
Q 048785          273 TGKIILEP  280 (280)
Q Consensus       273 ~gkvvi~~  280 (280)
                      .||+|+++
T Consensus       335 ~gKvvv~~  342 (343)
T 2eih_A          335 FGKVVLQV  342 (343)
T ss_dssp             SSEEEEEC
T ss_pred             ceEEEEec
Confidence            89999875

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=8.9e-47  Score=321.67  Aligned_cols=272  Identities=25%  Similarity=0.353  Sum_probs=228.0

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +|+|.|+|+++||+||+.+++||++|+.++.|..+.   ..+|.++|||++|+|+++|++|++|++||+|++..+....|
T Consensus        43 ~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~G  119 (363)
T 4dvj_A           43 IELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPD---GTDWKVIGYDAAGIVSAVGPDVTLFRPGDEVFYAGSIIRPG  119 (363)
T ss_dssp             EEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC-----CCSBCCCCCEEEEEEEECTTCCSCCTTCEEEECCCTTSCC
T ss_pred             eecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCC---CCCCCcccceeEEEEEEeCCCCCCCCCCCEEEEccCCCCCc
Confidence            478889999999999999999999999999988652   36789999999999999999999999999999876555689


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhh---------h------------------hhhh-CCCE
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA---------G------------------LAKL-GNSH  133 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~---------~------------------la~~-~G~~  133 (280)
                      +|+||+++|++.++++|+++++++||+++++++|||+++.+.+         +                  +|+. .|++
T Consensus       120 ~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~  199 (363)
T 4dvj_A          120 TNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLT  199 (363)
T ss_dssp             SCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSE
T ss_pred             cceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCE
Confidence            9999999999999999999999999999999999999985431         1                  8887 5889


Q ss_pred             EEEEecC-CcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCC-CcccccccccCCcEEEEeCCCchhhHHH
Q 048785          134 VTATCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGI-PWSTFEPNLAENGKVIDLTPTPSAMLTF  211 (280)
Q Consensus       134 Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~  211 (280)
                      |++++++ ++.++++++|+++++++++...+.+....++++|++|||+|++ .++.++++++++|+++.++....    +
T Consensus       200 Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~----~  275 (363)
T 4dvj_A          200 VIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDDPSA----F  275 (363)
T ss_dssp             EEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTTCEEEECSCCSS----C
T ss_pred             EEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCCCEEEEECCCCc----c
Confidence            9999975 7899999999999999876333333334677999999999986 58899999999999999975332    2


Q ss_pred             HHhhhhccceeeEEEEEcC-----------CHHHHHHHHHHHHCCCeeEecccee---cchhHHHHHHHHhcCCCcCcEE
Q 048785          212 AWQKLTFSKKQLVPLLVIP-----------KGENLVFLVKLLKEGKIKTLIDSKH---LLSKAEDAWAKGADGHATGKII  277 (280)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~g~~~~~~~~~~---~~~~~~~a~~~~~~~~~~gkvv  277 (280)
                      +...+..++.++.+.....           ..+.++++++++++|++++.+++++   +++++++||+.+.+++..||+|
T Consensus       276 ~~~~~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~~~~~GKvV  355 (363)
T 4dvj_A          276 DIMLFKRKAVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRTTLTNRLSPINAANLKQAHALVESGTARGKVV  355 (363)
T ss_dssp             CGGGGTTTTCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSSCCCEEEEECSCSHHHHHHHHHHHHHTCCCSEEE
T ss_pred             chHHHhhccceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCCCeeccccceecCCCHHHHHHHHHHHHhCCCceEEE
Confidence            3344555666666533211           1467899999999999999888766   9999999999999999999999


Q ss_pred             EeC
Q 048785          278 LEP  280 (280)
Q Consensus       278 i~~  280 (280)
                      +++
T Consensus       356 l~~  358 (363)
T 4dvj_A          356 IEG  358 (363)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            975

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=2.1e-47  Score=321.47  Aligned_cols=273  Identities=22%  Similarity=0.198  Sum_probs=228.5

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee---cC
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL---NH   77 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~---~~   77 (280)
                      ++++|.|+|+++||+||+.+++||++|+.++.|..+.  ...+|.++|||++|+|+++|  +++|++||||++..   +.
T Consensus        17 ~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~v~G~E~~G~V~~~G--v~~~~vGdrV~~~~~~~g~   92 (324)
T 3nx4_A           17 VQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKI--IRHFPMIPGIDFAGTVHASE--DPRFHAGQEVLLTGWGVGE   92 (324)
T ss_dssp             EEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTC--CCSSSBCCCSEEEEEEEEES--STTCCTTCEEEEECTTBTT
T ss_pred             EeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCC--CCCCCccccceeEEEEEEeC--CCCCCCCCEEEEcccccCC
Confidence            3578999999999999999999999999999987642  24688999999999999998  57899999999763   33


Q ss_pred             CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhh--h-------h----------------hhhhCCC
Q 048785           78 FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS--A-------G----------------LAKLGNS  132 (280)
Q Consensus        78 ~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~--~-------~----------------la~~~G~  132 (280)
                      ...|+|+||+.+|++.++++|+++++++||++++.++|||+++...  .       .                +|+.+|+
T Consensus        93 ~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga  172 (324)
T 3nx4_A           93 NHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGY  172 (324)
T ss_dssp             TBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC
T ss_pred             CCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCC
Confidence            4679999999999999999999999999999999999999988532  1       1                8999999


Q ss_pred             EEEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHH
Q 048785          133 HVTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTF  211 (280)
Q Consensus       133 ~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~  211 (280)
                      +|+++++ +++.++++++|+++++|+++...  .....++++|++|||+|++.++.++++++++|+++.+|........+
T Consensus       173 ~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~--~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~  250 (324)
T 3nx4_A          173 QVAAVSGRESTHGYLKSLGANRILSRDEFAE--SRPLEKQLWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGFALPT  250 (324)
T ss_dssp             CEEEEESCGGGHHHHHHHTCSEEEEGGGSSC--CCSSCCCCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTCSEEEE
T ss_pred             EEEEEeCCHHHHHHHHhcCCCEEEecCCHHH--HHhhcCCCccEEEECCCcHHHHHHHHHHhcCCEEEEEecCCCCCCCC
Confidence            9999995 58999999999999999876554  33445568999999999988999999999999999998654322222


Q ss_pred             HHhhhhccceeeEEEEEcC-C----HHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          212 AWQKLTFSKKQLVPLLVIP-K----GENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ....+..++.++.++.... .    .+.++++++++++|++++. +++|+++++++||+.+.+++..||+|+++
T Consensus       251 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~-~~~~~l~~~~~A~~~~~~~~~~gkvvv~~  323 (324)
T 3nx4_A          251 TVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKDLPESFYAQA-ATEITLADAPKFADAIINNQVQGRTLVKI  323 (324)
T ss_dssp             ESHHHHHHCCEEEECCSTTCCHHHHHHHHHHHHHHSCHHHHHHH-EEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             CHHHHhhcCeEEEEEeccccChHHHHHHHHHHHHHHHcCCCCCC-ceeEeHHHHHHHHHHHHhCCCCceEEEec
Confidence            3334455677777654311 1    3668899999999999987 99999999999999999999999999975

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=3.6e-46  Score=316.69  Aligned_cols=274  Identities=19%  Similarity=0.195  Sum_probs=225.7

Q ss_pred             CCCCCCCC-CCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe-----
Q 048785            1 HVHVPVPT-PRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI-----   74 (280)
Q Consensus         1 ~~~~~~~~-~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~-----   74 (280)
                      ++|+|+|+ +++|||||||.|+|||++|++.+.|..+    ..+|+++|||++|+|+++|++|+++++||+|++.     
T Consensus        14 v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~----~~~P~i~G~E~~G~V~~vG~~V~~~~~GdrV~~~~~~~~   89 (346)
T 4a2c_A           14 VAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGA----HYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPC   89 (346)
T ss_dssp             EEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCS----SSSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECCEECC
T ss_pred             EEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCC----CCCCccccEEEEEEEEEECCCcccccCCCeEEeeeccCC
Confidence            46899998 5799999999999999999998888764    3688999999999999999999999999999874     


Q ss_pred             -------------------ecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------
Q 048785           75 -------------------LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------  125 (280)
Q Consensus        75 -------------------~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------  125 (280)
                                         .+...+|+|+||+++|++.++++|+++++++||+++. +.++++++ ...+          
T Consensus        90 g~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~-~~~~~~~~-~~~~~~~g~~VlV~  167 (346)
T 4a2c_A           90 FTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEP-ITVGLHAF-HLAQGCENKNVIII  167 (346)
T ss_dssp             SCSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEEEGGGEEECCTTSCGGGGGGHHH-HHHHHHHH-HHTTCCTTSEEEEE
T ss_pred             CCcccccCCccccCCCcccccCCCCcccccccccchheEEECCCCCCHHHHHhchH-HHHHHHHH-HHhccCCCCEEEEE
Confidence                               2234679999999999999999999999999998753 33555555 3333          


Q ss_pred             -----------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCCc-c-cccCCCCCcccEEEECCCCC-Cccccc
Q 048785          126 -----------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPDG-A-ALKSPSGRKYDAVIHCARGI-PWSTFE  189 (280)
Q Consensus       126 -----------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~-~-~~~~~~~~~~d~v~d~~g~~-~~~~~~  189 (280)
                                 +|+.+|+ .++++++ ++|+++++++|+++++|+++.+. + ....+.++++|++|||+|++ .++.++
T Consensus       168 GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~  247 (346)
T 4a2c_A          168 GAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAGVPQTVELAV  247 (346)
T ss_dssp             CCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECSCSHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcccccccccccchhhhhh
Confidence                       8999998 5566665 47899999999999999988772 2 23345678899999999975 488999


Q ss_pred             ccccCCcEEEEeCCCchh--hHHHHHhhhhccceeeEEEEEc----CCHHHHHHHHHHHHCCCee--EeccceecchhHH
Q 048785          190 PNLAENGKVIDLTPTPSA--MLTFAWQKLTFSKKQLVPLLVI----PKGENLVFLVKLLKEGKIK--TLIDSKHLLSKAE  261 (280)
Q Consensus       190 ~~l~~~g~~v~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~g~~~--~~~~~~~~~~~~~  261 (280)
                      ++++++|+++.+|.....  .....+..+..+++++.+.+..    ...++++++++++++|+++  |+++++|+|++++
T Consensus       248 ~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~  327 (346)
T 4a2c_A          248 EIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFA  327 (346)
T ss_dssp             HHCCTTCEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCCSSTTCHHHHHHHHHHHTTCSCCGGGEEEEECHHHHH
T ss_pred             heecCCeEEEEEeccCCCccccccCHHHHhhceeEEEEEeccccCcchHHHHHHHHHHHHcCCCCCCccEeEEEeHHHHH
Confidence            999999999999865432  2345556667788888876432    2357899999999999874  6788999999999


Q ss_pred             HHHHHHhcCCCcCcEEEeC
Q 048785          262 DAWAKGADGHATGKIILEP  280 (280)
Q Consensus       262 ~a~~~~~~~~~~gkvvi~~  280 (280)
                      +||+.+.+++..||+||+|
T Consensus       328 ~A~~~l~~~~~~GKvVl~P  346 (346)
T 4a2c_A          328 QAVRDIARNAMPGKVLLIP  346 (346)
T ss_dssp             HHHHHHTTSCCCSEEEECC
T ss_pred             HHHHHHHcCCCceEEEEEC
Confidence            9999999999999999975

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=1.5e-46  Score=318.10  Aligned_cols=272  Identities=19%  Similarity=0.240  Sum_probs=224.6

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +++|.|+|+++||+|||.++|||++|+..+.|..+.  ...+|.++|||++|+|+++|++|+++++||+|+++.   ..|
T Consensus        23 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~i~G~E~~G~V~~vG~~v~~~~vGdrV~~~~---~~G   97 (340)
T 3gms_A           23 EYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAH--RIPLPNIPGYEGVGIVENVGAFVSRELIGKRVLPLR---GEG   97 (340)
T ss_dssp             EEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTT--TSCSSBCCCSCCEEEEEEECTTSCGGGTTCEEEECS---SSC
T ss_pred             EecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCC--CCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEecC---CCc
Confidence            578899999999999999999999999999987642  236789999999999999999999999999999864   579


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEec
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCG  139 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~  139 (280)
                      +|+||+++|++.++++|+++++++||++++.++|||+++.+.++                      +|+..|++|+++++
T Consensus        98 ~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~  177 (340)
T 3gms_A           98 TWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTR  177 (340)
T ss_dssp             SSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEES
T ss_pred             cceeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC
Confidence            99999999999999999999999999999999999999966544                      88889999999995


Q ss_pred             -CCcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhh
Q 048785          140 -ARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKL  216 (280)
Q Consensus       140 -~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  216 (280)
                       +++.+.++++|+++++++++.+  ....+.+.++++|++|||+|++.....+++++++|+++.+|........  +..+
T Consensus       178 ~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~--~~~~  255 (340)
T 3gms_A          178 NNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLSGIQVN--WAEI  255 (340)
T ss_dssp             SSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTSCCCC--HHHH
T ss_pred             CHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCChhHHHHHHHhcCCCEEEEEeecCCCCCC--HHHh
Confidence             5899999999999999987766  2344456677999999999998877777999999999999864432111  1111


Q ss_pred             h-ccceeeEEEEE---------cCCHHHHHHHHHHHHCCCeeE-eccceecchhHHHHHHHHhcCCC-cCcEEEeC
Q 048785          217 T-FSKKQLVPLLV---------IPKGENLVFLVKLLKEGKIKT-LIDSKHLLSKAEDAWAKGADGHA-TGKIILEP  280 (280)
Q Consensus       217 ~-~~~~~~~~~~~---------~~~~~~~~~~~~~i~~g~~~~-~~~~~~~~~~~~~a~~~~~~~~~-~gkvvi~~  280 (280)
                      . ..++.+..+..         ....++++++++++++|++++ .++++|+++++++||+.+.+++. .||+++++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~i~~~~~l~~~~~A~~~~~~~~~~~GKvvl~~  331 (340)
T 3gms_A          256 VTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMKVHSTYELADVKAAVDVVQSAEKTKGKVFLTS  331 (340)
T ss_dssp             HHTSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCCEEEEEEGGGHHHHHHHHHCTTCCSSEEEEEC
T ss_pred             hhcccceEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcCCCccccccEEEeHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence            1 12222222211         112467899999999999987 57899999999999999999974 59999974

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=1.9e-46  Score=318.85  Aligned_cols=275  Identities=19%  Similarity=0.223  Sum_probs=227.1

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHH-hHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWK-IKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL----   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~-~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~----   75 (280)
                      ++|+|.|+|+++||+|||.+++||++|++ +..|..+    ..+|.++|||++|+|+++|++|++|++||||++..    
T Consensus        14 ~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~----~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~c   89 (352)
T 3fpc_A           14 WIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIG----ERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPD   89 (352)
T ss_dssp             EEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTC----CCSSEECCCEEEEEEEEECTTCCSCCTTCEEEECSBCCC
T ss_pred             EEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCC----CCCCcccCCcceEEEEEECCCCCcCCCCCEEEEccccCC
Confidence            35789999999999999999999999999 5577664    36789999999999999999999999999998631    


Q ss_pred             -----------------------cCCCCCcceeEEeeccc--ccccCCCCCChhhhcccchhHHHHHHHHHhhhh-----
Q 048785           76 -----------------------NHFSGGGLAEFAMVKES--LTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-----  125 (280)
Q Consensus        76 -----------------------~~~~~g~~~~~~~v~~~--~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----  125 (280)
                                             +....|+|+||+.+|+.  .++++|+++++++||+++.++.|||+++ +.++     
T Consensus        90 ~~c~~c~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~al-~~~~~~~g~  168 (352)
T 3fpc_A           90 WRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELANIKLGD  168 (352)
T ss_dssp             SSSHHHHTTCGGGTTSTTTTBCBTTTBCCSSBSCEEESSHHHHCEECCTTSCHHHHTTTTTHHHHHHHHH-HHTTCCTTC
T ss_pred             CCchhhcCCCcCCccccccccccccCCCCcccceEEeccccCeEEECCCCCCHHHHhhccchhHHHHHHH-HhcCCCCCC
Confidence                                   22357999999999976  8999999999999999999999999999 4433     


Q ss_pred             ----------------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCC-C
Q 048785          126 ----------------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGI-P  184 (280)
Q Consensus       126 ----------------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~-~  184 (280)
                                      +|+.+|+ +|++++++ ++.++++++|+++++++++.+  ....+.+.++++|++|||+|++ .
T Consensus       169 ~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~~~~  248 (352)
T 3fpc_A          169 TVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGDVHT  248 (352)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCChHH
Confidence                            8999999 89999975 788999999999999987766  3344567778999999999995 5


Q ss_pred             cccccccccCCcEEEEeCCCchh-hHH--HHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeE--eccceec-ch
Q 048785          185 WSTFEPNLAENGKVIDLTPTPSA-MLT--FAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKT--LIDSKHL-LS  258 (280)
Q Consensus       185 ~~~~~~~l~~~g~~v~~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~--~~~~~~~-~~  258 (280)
                      ++.++++++++|+++.+|..... ...  .......+++.++.+.......++++++++++++|++++  +++++|+ |+
T Consensus       249 ~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~  328 (352)
T 3fpc_A          249 FAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFD  328 (352)
T ss_dssp             HHHHHHHEEEEEEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCCCCHHHHHHHHHHHHHTTSCCGGGGEEEEEESTT
T ss_pred             HHHHHHHHhcCCEEEEecccCCCCceecchhHhhhhccccEEEEeeccCchhHHHHHHHHHHcCCCChhHhheeeCCCHH
Confidence            89999999999999999854321 111  111122346677776554345778999999999999975  5789999 99


Q ss_pred             hHHHHHHHHhcCCC-cCcEEEeC
Q 048785          259 KAEDAWAKGADGHA-TGKIILEP  280 (280)
Q Consensus       259 ~~~~a~~~~~~~~~-~gkvvi~~  280 (280)
                      ++++||+.+.++.. .+|+|+++
T Consensus       329 ~~~~A~~~~~~~~~~~~Kvvi~~  351 (352)
T 3fpc_A          329 NIEKAFMLMKDKPKDLIKPVVIL  351 (352)
T ss_dssp             HHHHHHHHHHSCCTTCSEEEEEC
T ss_pred             HHHHHHHHHHhCCCCcEEEEEEe
Confidence            99999999998654 48999975

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=6.5e-45  Score=311.84  Aligned_cols=277  Identities=29%  Similarity=0.448  Sum_probs=223.0

Q ss_pred             CCCCCCCC-CCCeEEEEEeeeecChhhHHhHhccCCC------------CCCCCCCccccccceEEEEEeCCCCCCCCCC
Q 048785            2 VHVPVPTP-RKDEVLLKVEASSLNAFDWKIKKGVARP------------ILPRKFPYIPATDVAGEIIEVGSEVKNFKAG   68 (280)
Q Consensus         2 ~~~~~~~~-~~~evlV~v~~~~i~~~d~~~~~g~~~~------------~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   68 (280)
                      +++|.|.+ +++||+|||.++|||++|+.++.|..+.            .....+|.++|||++|+|+++|++|++|++|
T Consensus        40 ~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~v~G~E~~G~V~~vG~~V~~~~vG  119 (375)
T 2vn8_A           40 QNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPG  119 (375)
T ss_dssp             EEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSBCCCCEEEEEEEEECTTCCSCCTT
T ss_pred             ccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCcccceeeeEEEEEeCCCCCCCCCC
Confidence            56788884 9999999999999999999998875321            0112378999999999999999999999999


Q ss_pred             CEEEEeecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHh--h----hh-----------------
Q 048785           69 YNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQ--S----AG-----------------  125 (280)
Q Consensus        69 d~V~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~--~----~~-----------------  125 (280)
                      |+|++..+....|+|+||+++|++.++++|+++++++||+++++++|||+++.+  .    .+                 
T Consensus       120 DrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~  199 (375)
T 2vn8_A          120 DEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTF  199 (375)
T ss_dssp             CEEEEECCTTSCCSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHH
T ss_pred             CEEEEecCCCCCccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHH
Confidence            999987654457999999999999999999999999999999999999999953  1    11                 


Q ss_pred             ---hhhhCCCEEEEEecCCcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCCC--cccccccccCCcEEE
Q 048785          126 ---LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIP--WSTFEPNLAENGKVI  199 (280)
Q Consensus       126 ---la~~~G~~Vi~~~~~~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~--~~~~~~~l~~~g~~v  199 (280)
                         +|+..|++|++++++++.++++++|++.++++++.+ .+.+..  ..++|++|||+|++.  +..++++++++|+++
T Consensus       200 ~~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~--~~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv  277 (375)
T 2vn8_A          200 AIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKS--LKPFDFILDNVGGSTETWAPDFLKKWSGATYV  277 (375)
T ss_dssp             HHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSSCHHHHHHT--SCCBSEEEESSCTTHHHHGGGGBCSSSCCEEE
T ss_pred             HHHHHHhCCCEEEEEeChHHHHHHHHcCCCEEEECCchHHHHHHhh--cCCCCEEEECCCChhhhhHHHHHhhcCCcEEE
Confidence               888999999999977889999999999999987755 222222  247999999999984  589999999999999


Q ss_pred             EeCCCchhhHH--------------HHHhhh-hc-cceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHH
Q 048785          200 DLTPTPSAMLT--------------FAWQKL-TF-SKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDA  263 (280)
Q Consensus       200 ~~g~~~~~~~~--------------~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a  263 (280)
                      .+|........              +..+++ .+ ++..+.........+.++++++++++|+++++++++|+|+++++|
T Consensus       278 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A  357 (375)
T 2vn8_A          278 TLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEA  357 (375)
T ss_dssp             ESCCSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHH
T ss_pred             EeCCCcccccccccccchhheeehhhccccccccccCcceEEEEeCCCHHHHHHHHHHHHCCCcccCcCeEECHHHHHHH
Confidence            99865432110              111111 11 333333222233567889999999999999999999999999999


Q ss_pred             HHHHhcCCCcCcEEEeC
Q 048785          264 WAKGADGHATGKIILEP  280 (280)
Q Consensus       264 ~~~~~~~~~~gkvvi~~  280 (280)
                      |+.+.+++..||+|+++
T Consensus       358 ~~~~~~~~~~gKvvi~~  374 (375)
T 2vn8_A          358 FLKVERGHARGKTVINV  374 (375)
T ss_dssp             HHHHHHCCCSSEEEEEC
T ss_pred             HHHHHcCCCCCeEEEEe
Confidence            99999988889999975

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=2.5e-46  Score=318.56  Aligned_cols=275  Identities=18%  Similarity=0.187  Sum_probs=222.6

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +++|.|+|+++||+|||.++|||++|+..+.|..+.  ...+|.++|||++|+|+++|++|++|++||+|++...  ..|
T Consensus        45 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~--~~G  120 (357)
T 1zsy_A           45 KNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGL--LPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPANA--GLG  120 (357)
T ss_dssp             EEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSC--CCCSSEECCSCCEEEEEEECTTCCSCCTTCEEEESSS--CSC
T ss_pred             eeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCC--CCCCCccccceEEEEEEEeCCCCCCCCCCCEEEEcCC--CCc
Confidence            577889999999999999999999999999987542  1257899999999999999999999999999998632  369


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEec
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCG  139 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~  139 (280)
                      +|+||+++|++.++++|+++++++||+++++++|||+++.+.++                      +|+.+|+++|++++
T Consensus       121 ~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~  200 (357)
T 1zsy_A          121 TWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVR  200 (357)
T ss_dssp             CSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             cceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEec
Confidence            99999999999999999999999999999988999999965432                      88999999888884


Q ss_pred             C-C----cHHHHHhcCCCeeecCCCCC-cccccCCCCC-cccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHH
Q 048785          140 A-R----NIEFVKSLGADEVLDYKTPD-GAALKSPSGR-KYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFA  212 (280)
Q Consensus       140 ~-~----~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~  212 (280)
                      + +    +.++++++|+++++++++.. ....+.+.+. ++|++|||+|++....++++++++|+++.+|........++
T Consensus       201 ~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~  280 (357)
T 1zsy_A          201 DRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMAKQPVVAS  280 (357)
T ss_dssp             CCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEEEESSCHHHHHHHHTTSCTTCEEEECCCCTTCCBCCC
T ss_pred             CccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEEEECCCcHHHHHHHHhhCCCCEEEEEecCCCCCCCCC
Confidence            3 3    35788899999999875421 1222233332 59999999998877788999999999999974332222223


Q ss_pred             HhhhhccceeeEEEEEcC---------CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          213 WQKLTFSKKQLVPLLVIP---------KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ...+.++++++.++....         ..+.++++++++++|++++.+.++|+|+++++||+.+.++...||+|+++
T Consensus       281 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  357 (357)
T 1zsy_A          281 VSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEASMKPFISSKQILTM  357 (357)
T ss_dssp             HHHHHHSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCCEEEEEGGGHHHHHHHHTSSSCSSEEEEEC
T ss_pred             HHHHHhcCceEEEEEcchhcccCCHHHHHHHHHHHHHHHHcCCCcCccceEEcHHHHHHHHHHHHhCCCCCcEEEeC
Confidence            334556777777654311         13467899999999999988889999999999999999888889999975

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=1.3e-45  Score=314.56  Aligned_cols=266  Identities=18%  Similarity=0.274  Sum_probs=225.4

Q ss_pred             CCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCC-CCCCCCEEEEe--------
Q 048785            4 VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK-NFKAGYNVVAI--------   74 (280)
Q Consensus         4 ~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~-~~~~Gd~V~~~--------   74 (280)
                      +|.|+|+++||+|||.+++||++|++.+.|..+.   ..+|.++|||++|+|+++|++|+ +|++||||+..        
T Consensus        26 ~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~~p~v~GhE~~G~V~~vG~~v~~~~~~GdrV~~~~~~~~cg~  102 (360)
T 1piw_A           26 YDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN---MKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLE  102 (360)
T ss_dssp             ECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSC---CCSSEECCCCEEEEEEEECTTCCSSCCTTCEEEECSEEECCSC
T ss_pred             ccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCC---CCCCcccCcCceEEEEEeCCCCCCCCCCCCEEEEecCCCCCCC
Confidence            8899999999999999999999999999886542   35789999999999999999999 99999999542        


Q ss_pred             ------------------e------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh-----
Q 048785           75 ------------------L------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-----  125 (280)
Q Consensus        75 ------------------~------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----  125 (280)
                                        .      +....|+|+||+++|++.++++|+++++++||++++++.|||+++.+ ++     
T Consensus       103 C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~  181 (360)
T 1piw_A          103 CDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGK  181 (360)
T ss_dssp             SHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTC
T ss_pred             ChhhcCCCcccCcchhhccccccCCCccCCCcceeEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCC
Confidence                              1      22356999999999999999999999999999999999999999965 33     


Q ss_pred             ----------------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCCC-Cc-ccccCCCCCcccEEEECCCC---C
Q 048785          126 ----------------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTP-DG-AALKSPSGRKYDAVIHCARG---I  183 (280)
Q Consensus       126 ----------------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~-~~-~~~~~~~~~~~d~v~d~~g~---~  183 (280)
                                      +|+.+|++|+++++ ++++++++++|+++++++++. +. +.+.    +++|++|||+|+   .
T Consensus       182 ~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~----~~~D~vid~~g~~~~~  257 (360)
T 1piw_A          182 KVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYF----DTFDLIVVCASSLTDI  257 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSC----SCEEEEEECCSCSTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhh----cCCCEEEECCCCCcHH
Confidence                            88899999999995 589999999999999998765 42 2222    479999999998   5


Q ss_pred             CcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchh--HH
Q 048785          184 PWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSK--AE  261 (280)
Q Consensus       184 ~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~--~~  261 (280)
                      .++.++++++++|+++.+|.... ...++...+..+++++.+.. ....++++++++++++|++++.+ ++|++++  ++
T Consensus       258 ~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~-~~~~~~~~~~~~l~~~g~l~~~i-~~~~l~~~~~~  334 (360)
T 1piw_A          258 DFNIMPKAMKVGGRIVSISIPEQ-HEMLSLKPYGLKAVSISYSA-LGSIKELNQLLKLVSEKDIKIWV-ETLPVGEAGVH  334 (360)
T ss_dssp             CTTTGGGGEEEEEEEEECCCCCS-SCCEEECGGGCBSCEEEECC-CCCHHHHHHHHHHHHHTTCCCCE-EEEESSHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEecCCCC-ccccCHHHHHhCCeEEEEEe-cCCHHHHHHHHHHHHhCCCcceE-EEEeccHhHHH
Confidence            68899999999999999986543 11233345566778877754 34678899999999999999888 8999999  99


Q ss_pred             HHHHHHhcCCCcCcEEEeC
Q 048785          262 DAWAKGADGHATGKIILEP  280 (280)
Q Consensus       262 ~a~~~~~~~~~~gkvvi~~  280 (280)
                      +||+.+.+++..||+|+++
T Consensus       335 ~A~~~~~~~~~~gKvvi~~  353 (360)
T 1piw_A          335 EAFERMEKGDVRYRFTLVG  353 (360)
T ss_dssp             HHHHHHHHTCCSSEEEEEC
T ss_pred             HHHHHHHCCCCceEEEEec
Confidence            9999999988889999874

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=2.8e-46  Score=315.56  Aligned_cols=277  Identities=21%  Similarity=0.246  Sum_probs=222.4

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +++|.|+|+++||+|||.+++||++|+.+..|...+.....+|.++|||++|+|+++|++|++|++||+|++...  ..|
T Consensus        19 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~--~~G   96 (333)
T 1wly_A           19 EEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTDFTVGERVCTCLP--PLG   96 (333)
T ss_dssp             EECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCSCCTTCEEEECSS--SCC
T ss_pred             EeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCCCCCCCEEEEecC--CCC
Confidence            578899999999999999999999999998886511010257899999999999999999999999999976531  279


Q ss_pred             cceeEEeecccccccCCCCCChhh--hcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEE
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAE--GAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTAT  137 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~--aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~  137 (280)
                      +|+||+.+|++.++++|+++++++  ||+++.+++|||+++.+.++                      +++..|++|+++
T Consensus        97 ~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~  176 (333)
T 1wly_A           97 AYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGT  176 (333)
T ss_dssp             CSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEE
T ss_pred             cceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence            999999999999999999999999  99999999999999975433                      778889999999


Q ss_pred             ecC-CcHHHHHhcCCCeeecCCCCC-c-ccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHh
Q 048785          138 CGA-RNIEFVKSLGADEVLDYKTPD-G-AALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQ  214 (280)
Q Consensus       138 ~~~-~~~~~~~~~g~~~v~~~~~~~-~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~  214 (280)
                      +++ ++.+.++++|++.++++++.+ . ...+.+.++++|++|||+|+..++.++++++++|+++.+|........++..
T Consensus       177 ~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~  256 (333)
T 1wly_A          177 VSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKDTLQKSLDCLRPRGMCAAYGHASGVADPIRVV  256 (333)
T ss_dssp             ESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSCTTTHHHHHHTEEEEEEEEECCCTTCCCCCCCHH
T ss_pred             eCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHHhhccCCEEEEEecCCCCcCCCChh
Confidence            976 688888899999999887655 2 2233344568999999999988999999999999999998544221122233


Q ss_pred             -hhhccc--eeeEEEEEc--CC----HHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          215 -KLTFSK--KQLVPLLVI--PK----GENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       215 -~~~~~~--~~~~~~~~~--~~----~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                       .+..++  .++.+....  ..    .+.++++++++++|++++.++++|+++++++||+.+.+++..||+|+++
T Consensus       257 ~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  331 (333)
T 1wly_A          257 EDLGVRGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAGVLHSSVAKTFPLREAAAAHKYMGGRQTIGSIVLLP  331 (333)
T ss_dssp             HHTTTTTSCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHHHCSCCSEEEEET
T ss_pred             HhhhhcCCcEEEEEeehhhccCHHHHHHHHHHHHHHHHCCCcCCCcceEEeHHHHHHHHHHHHcCCCceEEEEEe
Confidence             444556  665554211  12    3478999999999999999999999999999999999888889999874

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.6e-45  Score=313.13  Aligned_cols=270  Identities=17%  Similarity=0.242  Sum_probs=224.4

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      +++|.|+|+++||+|||.++|||++|+.++.|..+.   ..+|.++|||++|+|+++|++|++|++||||++..      
T Consensus        38 ~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~~P~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~Cg  114 (369)
T 1uuf_A           38 MDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAG---TVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCK  114 (369)
T ss_dssp             EECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSC---CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCS
T ss_pred             EEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCC---CCCCeecccCceEEEEEECCCCCCCCCCCEEEEccCCCCCC
Confidence            578999999999999999999999999999886542   25789999999999999999999999999998631      


Q ss_pred             ---------------------------cCCCCCcceeEEeecccccccCCCC-CChhhhcccchhHHHHHHHHHhhhh--
Q 048785           76 ---------------------------NHFSGGGLAEFAMVKESLTASRPLE-VSAAEGAGLPLAGLTALEALTQSAG--  125 (280)
Q Consensus        76 ---------------------------~~~~~g~~~~~~~v~~~~~~~~p~~-~~~~~aa~~~~~~~~a~~~l~~~~~--  125 (280)
                                                 +....|+|+||+.+|++.++++|++ +++++||+++++++|||+++.+. +  
T Consensus       115 ~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~~~P~~~ls~~~aa~l~~~~~tA~~al~~~-~~~  193 (369)
T 1uuf_A          115 HCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHW-QAG  193 (369)
T ss_dssp             SSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCSCGGGHHHHGGGGTHHHHHHHHHHHT-TCC
T ss_pred             CCcccCCCCcccCcchhcccccccccCCCCCCCcccceEEEcchhEEECCCCCCCHHHhhhhhhhHHHHHHHHHhc-CCC
Confidence                                       1134699999999999999999999 99999999999999999999653 2  


Q ss_pred             -------------------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCC-C
Q 048785          126 -------------------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGI-P  184 (280)
Q Consensus       126 -------------------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~  184 (280)
                                         +|+.+|++|+++++ ++++++++++|+++++++++.+.  ..... +++|++|||+|++ .
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~--~~~~~-~g~Dvvid~~g~~~~  270 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADE--MAAHL-KSFDFILNTVAAPHN  270 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHH--HHTTT-TCEEEEEECCSSCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHH--HHHhh-cCCCEEEECCCCHHH
Confidence                               88999999999995 58999999999999998866431  11111 5799999999986 5


Q ss_pred             cccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHH
Q 048785          185 WSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAW  264 (280)
Q Consensus       185 ~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~  264 (280)
                      ++.++++++++|+++.+|........++...+..+++++.+.. ....++++++++++++|++++.+. +|+++++++||
T Consensus       271 ~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~-~~~~~~~~~~~~l~~~g~i~~~i~-~~~l~~~~~A~  348 (369)
T 1uuf_A          271 LDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSM-IGGIPETQEMLDFCAEHGIVADIE-MIRADQINEAY  348 (369)
T ss_dssp             HHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECC-SCCHHHHHHHHHHHHHHTCCCCEE-EECGGGHHHHH
T ss_pred             HHHHHHHhccCCEEEEeccCCCCccccCHHHHHhCCcEEEEee-cCCHHHHHHHHHHHHhCCCCcceE-EEcHHHHHHHH
Confidence            8899999999999999986543222344555667888887754 345788999999999999998764 79999999999


Q ss_pred             HHHhcCCCcCcEEEeC
Q 048785          265 AKGADGHATGKIILEP  280 (280)
Q Consensus       265 ~~~~~~~~~gkvvi~~  280 (280)
                      +.+.++...||+|+++
T Consensus       349 ~~~~~~~~~gKvvi~~  364 (369)
T 1uuf_A          349 ERMLRGDVKYRFVIDN  364 (369)
T ss_dssp             HHHHTTCSSSEEEEEG
T ss_pred             HHHHcCCCceEEEEec
Confidence            9999988889999864

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=2.4e-46  Score=316.92  Aligned_cols=271  Identities=27%  Similarity=0.386  Sum_probs=224.6

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCC--C
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHF--S   79 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~--~   79 (280)
                      +|+|.|+|+++||+|||.+++||++|+.++.|..+. ....+|.++|||++|+|+++|+++++|++||+|+++....  .
T Consensus        23 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~g~~~~  101 (343)
T 3gaz_A           23 RKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPH-AQQPLPAILGMDLAGTVVAVGPEVDSFRVGDAVFGLTGGVGGL  101 (343)
T ss_dssp             EEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGG-GCCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECCSSTTC
T ss_pred             EeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCC-CCCCCCcccCcceEEEEEEECCCCCCCCCCCEEEEEeCCCCCC
Confidence            578999999999999999999999999999886532 1236889999999999999999999999999999874321  4


Q ss_pred             CCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEE
Q 048785           80 GGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTAT  137 (280)
Q Consensus        80 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~  137 (280)
                      +|+|+||+++|++.++++|+++++++||+++++++|||+++.+.++                      +|+..|++|+++
T Consensus       102 ~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~  181 (343)
T 3gaz_A          102 QGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT  181 (343)
T ss_dssp             CCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence            6999999999999999999999999999999999999999955443                      888999999999


Q ss_pred             ecCCcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhh
Q 048785          138 CGARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQK  215 (280)
Q Consensus       138 ~~~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~  215 (280)
                      .++++.++++++|++. ++ ++.+  ......+.++++|++|||+|++.+..++++++++|+++.+|.....    +...
T Consensus       182 ~~~~~~~~~~~lGa~~-i~-~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~----~~~~  255 (343)
T 3gaz_A          182 ARGSDLEYVRDLGATP-ID-ASREPEDYAAEHTAGQGFDLVYDTLGGPVLDASFSAVKRFGHVVSCLGWGTH----KLAP  255 (343)
T ss_dssp             ECHHHHHHHHHHTSEE-EE-TTSCHHHHHHHHHTTSCEEEEEESSCTHHHHHHHHHEEEEEEEEESCCCSCC----CCHH
T ss_pred             eCHHHHHHHHHcCCCE-ec-cCCCHHHHHHHHhcCCCceEEEECCCcHHHHHHHHHHhcCCeEEEEcccCcc----ccch
Confidence            6668899999999998 66 4443  2333445677899999999998899999999999999999855421    2233


Q ss_pred             hhccceeeEEEEEc----------CCHHHHHHHHHHHHCCCeeEecc-ceecchhHHHHHHHHhcCCC----cCcEEEe
Q 048785          216 LTFSKKQLVPLLVI----------PKGENLVFLVKLLKEGKIKTLID-SKHLLSKAEDAWAKGADGHA----TGKIILE  279 (280)
Q Consensus       216 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~i~~g~~~~~~~-~~~~~~~~~~a~~~~~~~~~----~gkvvi~  279 (280)
                      +.+++.++.+....          ...++++++++++++|++++.++ ++|+++++++||+.+.+++.    .||++++
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~~  334 (343)
T 3gaz_A          256 LSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLAPRLDPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAIT  334 (343)
T ss_dssp             HHHTTCEEEECCTTHHHHHTCSHHHHHHHHHHHHHHHHTTCCCCCBCSCCEETTCHHHHHHHHHTCTTCCCCSSBCEEE
T ss_pred             hhhcCcEEEEEEeccchhcccchHHHHHHHHHHHHHHHCCCcccCccCcEecHHHHHHHHHHHHcCCCcccccceEEEE
Confidence            44566666664321          02367899999999999999999 79999999999999998865    5788875

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=2.6e-46  Score=318.07  Aligned_cols=274  Identities=26%  Similarity=0.400  Sum_probs=224.5

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCC-CCCCCCCEEEEeecCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEV-KNFKAGYNVVAILNHFSG   80 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v-~~~~~Gd~V~~~~~~~~~   80 (280)
                      +++|.|+|+++||+|||.++|||++|+.+..|..+.  +..+|.++|||++|+|+++|++| ++|++||+|+++.   ..
T Consensus        40 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~~~p~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~---~~  114 (354)
T 2j8z_A           40 KEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDP--PPGASNILGLEASGHVAELGPGCQGHWKIGDTAMALL---PG  114 (354)
T ss_dssp             EEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--CTTSCSSSCSEEEEEEEEECSCC--CCCTTCEEEEEC---SS
T ss_pred             eecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCC--CCCCCcccceeeEEEEEEECCCcCCCCCCCCEEEEec---CC
Confidence            567889999999999999999999999999886542  22578999999999999999999 9999999999874   46


Q ss_pred             CcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEe
Q 048785           81 GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATC  138 (280)
Q Consensus        81 g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~  138 (280)
                      |+|+||+.+|++.++++|+++++++||+++.+++|||+++.+.++                      +++..|++|++++
T Consensus       115 G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~  194 (354)
T 2j8z_A          115 GGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTA  194 (354)
T ss_dssp             CCSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CcceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEe
Confidence            999999999999999999999999999999999999999965433                      7788999999999


Q ss_pred             cC-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHH-h
Q 048785          139 GA-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAW-Q  214 (280)
Q Consensus       139 ~~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~-~  214 (280)
                      ++ ++.+.++++|++.++++++.+  ....+.+.++++|++|||+|++.+..++++++++|+++.+|........++. .
T Consensus       195 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~  274 (354)
T 2j8z_A          195 GSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDINGPLFS  274 (354)
T ss_dssp             SCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCGGGHHHHHHHEEEEEEEEECCCTTCSCCCSCHHH
T ss_pred             CCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCCchHHHHHHHhccCCCEEEEEeccCCCccCCChhH
Confidence            64 788888999999999887655  2233344556899999999998888999999999999999854432222233 4


Q ss_pred             hhhccceeeEEEEEcCC-H--------HHHHHHHHHHHCC---CeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          215 KLTFSKKQLVPLLVIPK-G--------ENLVFLVKLLKEG---KIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       215 ~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~i~~g---~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      .+..++.++.+...... .        +..+++++++++|   +++++++++|+++++++||+.+.++...||+|+++
T Consensus       275 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  352 (354)
T 2j8z_A          275 KLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYMEANKNIGKIVLEL  352 (354)
T ss_dssp             HHHHTTCEEEECCSTTCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred             HHHhCCCEEEEEEcccccccccHHHHHHHHHHHHHHHHcCCCccccCccceEEcHHHHHHHHHHHHhCCCCceEEEec
Confidence            45567777777543221 1        1234688899999   99999999999999999999999888889999874

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=1.6e-45  Score=311.47  Aligned_cols=271  Identities=23%  Similarity=0.295  Sum_probs=226.0

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      +|+|.|+|+++||+|||.++|||++|+..+.|..+.  ...+|.++|||++|+|+++|++|++|++||+|++..      
T Consensus        16 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~cg   93 (339)
T 1rjw_A           16 KEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPV--KPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACG   93 (339)
T ss_dssp             EECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS--CCCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECCS
T ss_pred             EEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCc--CCCCCeeccccceEEEEEECCCCCcCCCCCEEEEecCCCCCC
Confidence            578999999999999999999999999999886541  236789999999999999999999999999998631      


Q ss_pred             -------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh-----------
Q 048785           76 -------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-----------  125 (280)
Q Consensus        76 -------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----------  125 (280)
                                         +....|+|+||+.+|++.++++|+++++++||+++++++|||+++.+. +           
T Consensus        94 ~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~g~~VlV~G  172 (339)
T 1rjw_A           94 HCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVT-GAKPGEWVAIYG  172 (339)
T ss_dssp             CSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHHHH-TCCTTCEEEEEC
T ss_pred             CCchhhCcCcccCCCcceeecCCCCcceeeEEechHHEEECCCCCCHHHhhhhhhhHHHHHHHHHhc-CCCCCCEEEEEC
Confidence                               123479999999999999999999999999999999999999999653 2           


Q ss_pred             ----------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCC-cc-cccCCCCCcccEEEECCCC-CCccccccc
Q 048785          126 ----------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCARG-IPWSTFEPN  191 (280)
Q Consensus       126 ----------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~-~~~~~~~~~  191 (280)
                                +|+..|++|++++++ ++.++++++|++.++++++.+ .+ ..+.+  +++|++|||+|+ ..++.++++
T Consensus       173 aG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~--~~~d~vid~~g~~~~~~~~~~~  250 (339)
T 1rjw_A          173 IGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKV--GGVHAAVVTAVSKPAFQSAYNS  250 (339)
T ss_dssp             CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHH--SSEEEEEESSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHh--CCCCEEEECCCCHHHHHHHHHH
Confidence                      888999999999964 788999999999999887654 22 22223  479999999998 568899999


Q ss_pred             ccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCC
Q 048785          192 LAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGH  271 (280)
Q Consensus       192 l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~  271 (280)
                      ++++|+++.+|..... ..++...+..++.++.+.. ....++++++++++++|++++. +++|+++++++||+.+.+++
T Consensus       251 l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~g~~-~~~~~~~~~~~~l~~~g~l~~~-~~~~~l~~~~~A~~~~~~~~  327 (339)
T 1rjw_A          251 IRRGGACVLVGLPPEE-MPIPIFDTVLNGIKIIGSI-VGTRKDLQEALQFAAEGKVKTI-IEVQPLEKINEVFDRMLKGQ  327 (339)
T ss_dssp             EEEEEEEEECCCCSSE-EEEEHHHHHHTTCEEEECC-SCCHHHHHHHHHHHHTTSCCCC-EEEEEGGGHHHHHHHHHTTC
T ss_pred             hhcCCEEEEecccCCC-CccCHHHHHhCCcEEEEec-cCCHHHHHHHHHHHHcCCCCcc-EEEEcHHHHHHHHHHHHcCC
Confidence            9999999999865432 2223334556777777654 3467889999999999999886 46899999999999999988


Q ss_pred             CcCcEEEeC
Q 048785          272 ATGKIILEP  280 (280)
Q Consensus       272 ~~gkvvi~~  280 (280)
                      ..||+|+++
T Consensus       328 ~~gKvvi~~  336 (339)
T 1rjw_A          328 INGRVVLTL  336 (339)
T ss_dssp             CSSEEEEEC
T ss_pred             CceEEEEec
Confidence            889999874

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=9.9e-46  Score=317.23  Aligned_cols=274  Identities=18%  Similarity=0.194  Sum_probs=223.2

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC---
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH---   77 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~---   77 (280)
                      ++|+|.|+|+++||+|||.+++||++|+.++.|..+   ...+|.++|||++|+|+++|++|++|++||||++....   
T Consensus        23 ~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg   99 (378)
T 3uko_A           23 IEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECR   99 (378)
T ss_dssp             EEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCT---TCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCS
T ss_pred             EEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCC---CCCCCccCCccceEEEEEeCCCCCcCCCCCEEEEecCCCCC
Confidence            357889999999999999999999999999998864   23689999999999999999999999999999875320   


Q ss_pred             -------------------------------------------CCCCcceeEEeecccccccCCCCCChhhhcccchhHH
Q 048785           78 -------------------------------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGL  114 (280)
Q Consensus        78 -------------------------------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~  114 (280)
                                                                 ...|+|+||+.+|++.++++|+++++++||++++++.
T Consensus       100 ~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~  179 (378)
T 3uko_A          100 ECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVP  179 (378)
T ss_dssp             SSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHH
T ss_pred             CChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhheEECCCCCCHHHhhhhhhhHH
Confidence                                                       0126999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhh---------------------hhhhCCC-EEEEEe-cCCcHHHHHhcCCCeeecCCC--CC-cc-cccC
Q 048785          115 TALEALTQSAG---------------------LAKLGNS-HVTATC-GARNIEFVKSLGADEVLDYKT--PD-GA-ALKS  167 (280)
Q Consensus       115 ~a~~~l~~~~~---------------------la~~~G~-~Vi~~~-~~~~~~~~~~~g~~~v~~~~~--~~-~~-~~~~  167 (280)
                      |||+++.+.++                     +|+.+|+ +|++++ +++++++++++|+++++++++  .+ .+ ..+.
T Consensus       180 ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~  259 (378)
T 3uko_A          180 TGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDL  259 (378)
T ss_dssp             HHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHh
Confidence            99999866544                     8899999 899999 468999999999999999873  33 22 3334


Q ss_pred             CCCCcccEEEECCCCC-CcccccccccCC-cEEEEeCCCch-hhHHHHHhhhhccceeeEEEEEc--CCHHHHHHHHHHH
Q 048785          168 PSGRKYDAVIHCARGI-PWSTFEPNLAEN-GKVIDLTPTPS-AMLTFAWQKLTFSKKQLVPLLVI--PKGENLVFLVKLL  242 (280)
Q Consensus       168 ~~~~~~d~v~d~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i  242 (280)
                      +.+ ++|++|||+|++ .++.++++++++ |+++.+|.... ....+....+. ++.++.+....  ...++++++++++
T Consensus       260 ~~g-g~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~l~  337 (378)
T 3uko_A          260 TDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRTQVPWLVEKY  337 (378)
T ss_dssp             TTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHH-TTCEEEECSGGGCCHHHHHHHHHHHH
T ss_pred             cCC-CCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHh-cCcEEEEEEecCCCchHHHHHHHHHH
Confidence            445 999999999995 588999999996 99999985432 11111112222 35566654321  2467899999999


Q ss_pred             HCCCee--EeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          243 KEGKIK--TLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       243 ~~g~~~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ++|+++  ++++++|+|+++++||+.+.+++.. |+||++
T Consensus       338 ~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~-Kvvi~~  376 (378)
T 3uko_A          338 MNKEIKVDEYITHNLTLGEINKAFDLLHEGTCL-RCVLDT  376 (378)
T ss_dssp             HTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCS-EEEEET
T ss_pred             HcCCCChhHheeeEeeHHHHHHHHHHHHCCCce-EEEEec
Confidence            999986  5788999999999999999988865 999875

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.2e-45  Score=311.06  Aligned_cols=274  Identities=23%  Similarity=0.258  Sum_probs=222.1

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +++|.|+|+++||+|||.+++||++|++...|..+   ...+|.++|||++|+|+++|++|++|++||+| +..+ ...|
T Consensus        19 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV-~~~g-~~~G   93 (327)
T 1qor_A           19 VEFTPADPAENEIQVENKAIGINFIDTYIRSGLYP---PPSLPSGLGTEAAGIVSKVGSGVKHIKAGDRV-VYAQ-SALG   93 (327)
T ss_dssp             EECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSC---CSSSSBCCCSCEEEEEEEECTTCCSCCTTCEE-EESC-CSSC
T ss_pred             eccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCC---CCCCCCCCCceeEEEEEEECCCCCCCCCCCEE-EECC-CCCc
Confidence            57888999999999999999999999999988653   12578999999999999999999999999999 4431 1359


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEec
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCG  139 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~  139 (280)
                      +|+||+.+|++.++++|+++++++||+++.+++|||+++.+.++                      +++..|++|+++++
T Consensus        94 ~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~  173 (327)
T 1qor_A           94 AYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG  173 (327)
T ss_dssp             CSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES
T ss_pred             eeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence            99999999999999999999999999999999999999974433                      77788999999997


Q ss_pred             C-CcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhh
Q 048785          140 A-RNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKL  216 (280)
Q Consensus       140 ~-~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  216 (280)
                      + ++.+.++++|++.++++++.+  ....+.+.++++|++|||+|+..++.++++++++|+++.+|........++...+
T Consensus       174 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~  253 (327)
T 1qor_A          174 TAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGIL  253 (327)
T ss_dssp             SHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHH
T ss_pred             CHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCchHHHHHHHHHhcCCCEEEEEecCCCCCCccCHHHH
Confidence            5 778888889999999887655  2233344556899999999977799999999999999999854322111222223


Q ss_pred             hcc-ceeeEEEEE---cC----CHHHHHHHHHHHHCCCeeEecc--ceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          217 TFS-KKQLVPLLV---IP----KGENLVFLVKLLKEGKIKTLID--SKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       217 ~~~-~~~~~~~~~---~~----~~~~~~~~~~~i~~g~~~~~~~--~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ..+ ++.+.+...   ..    ..+.++++++++++|++++.++  ++|+|+++++||+.+.++...||+++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  327 (327)
T 1qor_A          254 NQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLIP  327 (327)
T ss_dssp             HHTTSCEEECCCHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEEC
T ss_pred             hhccceEEEccchhhhcCCHHHHHHHHHHHHHHHHCCCcccccccCcEEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence            333 444432211   01    2456899999999999999999  9999999999999999988889999875

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=9.2e-46  Score=316.20  Aligned_cols=271  Identities=21%  Similarity=0.285  Sum_probs=225.7

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe------
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI------   74 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~------   74 (280)
                      ++++|.|+|+++||+|||.+++||++|+.++.|..+    ..+|.++|||++|+|+++|++|++|++||+|++.      
T Consensus        37 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~----~~~p~v~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg  112 (370)
T 4ej6_A           37 VRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFP----STPPVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNISCG  112 (370)
T ss_dssp             EEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSC----CCSSEECCCSEEEEEEEECTTCCSSCTTCEEEECCEECCS
T ss_pred             EEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCC----CCCCeecCcceEEEEEEECCCCCCCCCCCEEEECCCCCCC
Confidence            357899999999999999999999999999998763    4678999999999999999999999999999873      


Q ss_pred             ------------------ecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh-----------
Q 048785           75 ------------------LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-----------  125 (280)
Q Consensus        75 ------------------~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----------  125 (280)
                                        .+....|+|+||+++|.+.++++|+++++++|| ++.++.|||+++ +.++           
T Consensus       113 ~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~G  190 (370)
T 4ej6_A          113 RCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILG  190 (370)
T ss_dssp             SSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEEC
T ss_pred             CChHHhCcCcccCCCccccCCCCCCcceEEEEEchhhEEECCCCCCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEEC
Confidence                              233467999999999999999999999999998 666888999999 4443           


Q ss_pred             ----------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCCCCCc-c-ccc---CCCCCcccEEEECCCCC-Cccc
Q 048785          126 ----------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYKTPDG-A-ALK---SPSGRKYDAVIHCARGI-PWST  187 (280)
Q Consensus       126 ----------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~-~-~~~---~~~~~~~d~v~d~~g~~-~~~~  187 (280)
                                +|+.+|+ +|++++++ ++.++++++|+++++++++.+. + ..+   .+.+ ++|++|||+|+. .++.
T Consensus       191 aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~g-g~Dvvid~~G~~~~~~~  269 (370)
T 4ej6_A          191 GGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPG-GVDVVIECAGVAETVKQ  269 (370)
T ss_dssp             CSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTT-CEEEEEECSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCC-CCCEEEECCCCHHHHHH
Confidence                      8999999 99999865 7899999999999999877662 2 222   3444 899999999964 5899


Q ss_pred             ccccccCCcEEEEeCCCchh-hHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCe--eEeccceecchhHHHHH
Q 048785          188 FEPNLAENGKVIDLTPTPSA-MLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKI--KTLIDSKHLLSKAEDAW  264 (280)
Q Consensus       188 ~~~~l~~~g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~--~~~~~~~~~~~~~~~a~  264 (280)
                      ++++++++|+++.+|..... ...++...+..+++++.+...  ..++++++++++++|++  +++++++|+|+++++||
T Consensus       270 ~~~~l~~~G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~  347 (370)
T 4ej6_A          270 STRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFI--NPFVHRRAADLVATGAIEIDRMISRRISLDEAPDVI  347 (370)
T ss_dssp             HHHHEEEEEEEEECSCCCTTCCCCCCHHHHHHTTCEEEECCS--CTTCHHHHHHHHHTTCSCCGGGEEEEECGGGHHHHH
T ss_pred             HHHHhccCCEEEEEeccCCCCccccCHHHHHhCCcEEEEecc--ChHHHHHHHHHHHcCCCChhHcEEEEEEHHHHHHHH
Confidence            99999999999999865431 333445566778888888653  34679999999999998  46788999999999999


Q ss_pred             HHHhcCC-CcCcEEEeC
Q 048785          265 AKGADGH-ATGKIILEP  280 (280)
Q Consensus       265 ~~~~~~~-~~gkvvi~~  280 (280)
                      +.+.++. ..+|+++++
T Consensus       348 ~~~~~~~~~~~kvv~~~  364 (370)
T 4ej6_A          348 SNPAAAGEVKVLVIPSA  364 (370)
T ss_dssp             HSCCCTTCSEEEECCC-
T ss_pred             HHHHcCCCCeEEEEEcc
Confidence            9998776 456777653

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=1.1e-45  Score=323.88  Aligned_cols=278  Identities=22%  Similarity=0.242  Sum_probs=227.7

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCC-------------CC-CCCCCC-ccccccceEEEEEeCCCCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVAR-------------PI-LPRKFP-YIPATDVAGEIIEVGSEVKNFK   66 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~-------------~~-~~~~~p-~~~G~e~~G~V~~vG~~v~~~~   66 (280)
                      +++|.|+|+++||+|||.++|||++|++...+...             .. ....+| .++|||++|+|+++|++|++|+
T Consensus        61 ~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~  140 (456)
T 3krt_A           61 DDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQ  140 (456)
T ss_dssp             EEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHHHTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCC
T ss_pred             EEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhccccccccccCCCCcccccceeEEEEEEECCCCCCCC
Confidence            57899999999999999999999999876432210             00 012456 6999999999999999999999


Q ss_pred             CCCEEEEeec-----------------------C-CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHh
Q 048785           67 AGYNVVAILN-----------------------H-FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQ  122 (280)
Q Consensus        67 ~Gd~V~~~~~-----------------------~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~  122 (280)
                      +||+|++...                       . ...|+|+||+++|.+.++++|+++++++||+++++++|||+++..
T Consensus       141 vGdrV~~~~~~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~  220 (456)
T 3krt_A          141 AGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVS  220 (456)
T ss_dssp             TTCEEEECCEECCCCSGGGTTSGGGCTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCcccccccccccccccCccccccccCCCCCcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHh
Confidence            9999997431                       0 125999999999999999999999999999999999999999854


Q ss_pred             h--hh----------------------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCCCCc---------------
Q 048785          123 S--AG----------------------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPDG---------------  162 (280)
Q Consensus       123 ~--~~----------------------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~---------------  162 (280)
                      .  ++                      +|+.+|++||++++ +++.++++++|++.++++.+.+.               
T Consensus       221 ~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~  300 (456)
T 3krt_A          221 RNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWK  300 (456)
T ss_dssp             TTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHH
T ss_pred             hcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHH
Confidence            3  22                      88999999998885 47899999999999999876531               


Q ss_pred             ---c-cccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHH
Q 048785          163 ---A-ALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFL  238 (280)
Q Consensus       163 ---~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (280)
                         + +.+.+.++++|++|||+|+..+..++++++++|+++.+|........++...+.++..++.+.. ....+++.++
T Consensus       301 ~~~~~i~~~t~g~g~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~-~~~~~~~~~~  379 (456)
T 3krt_A          301 RFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRKGGTITTCASTSGYMHEYDNRYLWMSLKRIIGSH-FANYREAWEA  379 (456)
T ss_dssp             HHHHHHHHHHTSCCEEEEEECSCHHHHHHHHHHEEEEEEEEESCCTTCSEEEEEHHHHHHTTCEEEECC-SCCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCcEEEEcCCchhHHHHHHHhhCCcEEEEEecCCCcccccCHHHHHhcCeEEEEec-cCCHHHHHHH
Confidence               2 2233566799999999999889999999999999999986554322333445566777777755 3466778889


Q ss_pred             HHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          239 VKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       239 ~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ++++++|++++.++++|+|+++++||+.+.+++..||+||.+
T Consensus       380 ~~l~~~g~l~~~i~~~~~l~~~~eA~~~l~~~~~~GKvvv~~  421 (456)
T 3krt_A          380 NRLIAKGRIHPTLSKVYSLEDTGQAAYDVHRNLHQGKVGVLC  421 (456)
T ss_dssp             HHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCSSSEEEEES
T ss_pred             HHHHHcCCcccceeEEEcHHHHHHHHHHHHhCCCCCcEEEEe
Confidence            999999999999999999999999999999999999999864

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=6.9e-45  Score=309.62  Aligned_cols=270  Identities=19%  Similarity=0.257  Sum_probs=222.6

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      +++|.|+|+++||+|||.++|||++|+..+.|..+.   ..+|.++|||++|+|+++|++|++|++||||++..      
T Consensus        25 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg  101 (357)
T 2cf5_A           25 YTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGM---SNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCG  101 (357)
T ss_dssp             EEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTC---CCSSBCCCCEEEEEEEEECSSCCSCCTTCEEEECSEEECCS
T ss_pred             EEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCC---CCCCeecCcceeEEEEEECCCCCCCCCCCEEEEcCCCCCCC
Confidence            567889999999999999999999999999886532   35789999999999999999999999999997521      


Q ss_pred             --------------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhh----hh
Q 048785           76 --------------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS----AG  125 (280)
Q Consensus        76 --------------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~----~~  125 (280)
                                                +....|+|+||+++|++.++++|+++++++||+++++++|||+++.+.    .+
T Consensus       102 ~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g  181 (357)
T 2cf5_A          102 GCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPG  181 (357)
T ss_dssp             SSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEECCSSCCHHHHTGGGTHHHHHHHHHHHTSTTSTT
T ss_pred             CChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEECcCCCCHHHhhhhhhhHHHHHHHHHhcCCCCCC
Confidence                                      112579999999999999999999999999999999999999998542    11


Q ss_pred             -----------------hhhhCCCEEEEEec-CCcHHHHH-hcCCCeeecCCCCCcccccCCCCCcccEEEECCCCC-Cc
Q 048785          126 -----------------LAKLGNSHVTATCG-ARNIEFVK-SLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGI-PW  185 (280)
Q Consensus       126 -----------------la~~~G~~Vi~~~~-~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~  185 (280)
                                       +|+.+|++|+++++ +++++.++ ++|+++++++++.. ...+.+  +++|++|||+|++ .+
T Consensus       182 ~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~-~~~~~~--~g~D~vid~~g~~~~~  258 (357)
T 2cf5_A          182 LRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQA-KMSELA--DSLDYVIDTVPVHHAL  258 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHH-HHHHST--TTEEEEEECCCSCCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHH-HHHHhc--CCCCEEEECCCChHHH
Confidence                             88899999999996 47788887 99999999886532 112222  3799999999986 58


Q ss_pred             ccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHH
Q 048785          186 STFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWA  265 (280)
Q Consensus       186 ~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~  265 (280)
                      +.++++++++|+++.+|........++.. +..++.++.+.. ....++++++++++++|++++.+ ++|+++++++||+
T Consensus       259 ~~~~~~l~~~G~iv~~G~~~~~~~~~~~~-~~~~~~~i~g~~-~~~~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~  335 (357)
T 2cf5_A          259 EPYLSLLKLDGKLILMGVINNPLQFLTPL-LMLGRKVITGSF-IGSMKETEEMLEFCKEKGLSSII-EVVKMDYVNTAFE  335 (357)
T ss_dssp             HHHHTTEEEEEEEEECSCCSSCCCCCHHH-HHHHTCEEEECC-SCCHHHHHHHHHHHHHTTCCCCE-EEEEGGGHHHHHH
T ss_pred             HHHHHHhccCCEEEEeCCCCCCccccCHH-HHhCccEEEEEc-cCCHHHHHHHHHHHHcCCCCCce-EEEeHHHHHHHHH
Confidence            89999999999999998544221112223 556777777754 34678899999999999998876 6999999999999


Q ss_pred             HHhcCCCcCcEEEeC
Q 048785          266 KGADGHATGKIILEP  280 (280)
Q Consensus       266 ~~~~~~~~gkvvi~~  280 (280)
                      .+.+++..||+|+++
T Consensus       336 ~~~~~~~~gKvvi~~  350 (357)
T 2cf5_A          336 RLEKNDVRYRFVVDV  350 (357)
T ss_dssp             HHHTTCSSSEEEEET
T ss_pred             HHHCCCCceEEEEeC
Confidence            999998889999874

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.3e-45  Score=311.19  Aligned_cols=275  Identities=21%  Similarity=0.254  Sum_probs=222.8

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN----   76 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~----   76 (280)
                      ++++|.|+|+++||+|||.+++||++|+..+.+.........+|.++|||++|+|+++|++|++|++||+|++...    
T Consensus        18 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg   97 (352)
T 1e3j_A           18 LEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCR   97 (352)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCS
T ss_pred             EEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCCCCCCCCEEEEcCcCCCC
Confidence            3578899999999999999999999999988743211112357899999999999999999999999999987421    


Q ss_pred             --------------------C-CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------
Q 048785           77 --------------------H-FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------  125 (280)
Q Consensus        77 --------------------~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------  125 (280)
                                          . ...|+|+||+++|++.++++|+++++++||++ .++.|||+++ +.++          
T Consensus        98 ~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~  175 (352)
T 1e3j_A           98 RCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVI  175 (352)
T ss_dssp             SSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEE
T ss_pred             CChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEECcCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEE
Confidence                                1 24799999999999999999999999999876 4667999999 4433          


Q ss_pred             -----------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCC-CC-c-ccccCCC---CCcccEEEECCCCC-Ccc
Q 048785          126 -----------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKT-PD-G-AALKSPS---GRKYDAVIHCARGI-PWS  186 (280)
Q Consensus       126 -----------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~-~~-~-~~~~~~~---~~~~d~v~d~~g~~-~~~  186 (280)
                                 +|+.+|++|++++++ ++.++++++|+++++++++ .+ . ...+.+.   ++++|++|||+|+. .++
T Consensus       176 GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~  255 (352)
T 1e3j_A          176 GAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCIT  255 (352)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEECCCCHHHHH
Confidence                       889999999999854 7889999999999999874 33 2 2223333   56899999999986 588


Q ss_pred             cccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCe--eEeccceecchhHHHHH
Q 048785          187 TFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKI--KTLIDSKHLLSKAEDAW  264 (280)
Q Consensus       187 ~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~--~~~~~~~~~~~~~~~a~  264 (280)
                      .++++++++|+++.+|.... ...++...+.++++++.+...  ..++++++++++++|++  +++++++|+++++++||
T Consensus       256 ~~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~  332 (352)
T 1e3j_A          256 IGINITRTGGTLMLVGMGSQ-MVTVPLVNACAREIDIKSVFR--YCNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAF  332 (352)
T ss_dssp             HHHHHSCTTCEEEECSCCSS-CCCCCHHHHHTTTCEEEECCS--CSSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHH
T ss_pred             HHHHHHhcCCEEEEEecCCC-CccccHHHHHhcCcEEEEecc--chHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHH
Confidence            99999999999999985432 122334566778888877543  35679999999999996  46778999999999999


Q ss_pred             HHHhcCC-CcCcEEEeC
Q 048785          265 AKGADGH-ATGKIILEP  280 (280)
Q Consensus       265 ~~~~~~~-~~gkvvi~~  280 (280)
                      +.+.+++ ..+|+|+++
T Consensus       333 ~~~~~~~~~~~Kvvi~~  349 (352)
T 1e3j_A          333 EAARKKADNTIKVMISC  349 (352)
T ss_dssp             HHHHHCCTTCSEEEEEC
T ss_pred             HHHhcCCCCceEEEEec
Confidence            9999887 689999875

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=9.3e-45  Score=307.85  Aligned_cols=274  Identities=26%  Similarity=0.336  Sum_probs=227.1

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCC-----CCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARP-----ILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~-----~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-   75 (280)
                      +|+|.|+|+++||+|||.+++||++|++++.|..+.     .....+|.++|||++|+|+++|++|++|++||||++.. 
T Consensus        16 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~   95 (347)
T 1jvb_A           16 QEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPW   95 (347)
T ss_dssp             EECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCE
T ss_pred             EEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCCCCCCCCCCEEEeCCC
Confidence            578999999999999999999999999998886431     01236789999999999999999999999999997642 


Q ss_pred             -----------------------cCCCCCcceeEEeecc-cccccCCCCCChhhhcccchhHHHHHHHHHhhhh------
Q 048785           76 -----------------------NHFSGGGLAEFAMVKE-SLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG------  125 (280)
Q Consensus        76 -----------------------~~~~~g~~~~~~~v~~-~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~------  125 (280)
                                             +....|+|+||+.+|+ +.++++ +++++++||++++++.|||+++.+ ++      
T Consensus        96 ~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~  173 (347)
T 1jvb_A           96 QGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLTCSGITTYRAVRK-ASLDPTKT  173 (347)
T ss_dssp             ECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEEC-SSSCHHHHGGGGTHHHHHHHHHHH-TTCCTTCE
T ss_pred             CCCCCChhhhCcCcccCcccccccccCCCcceeEEEecCccceEEe-CCCCHHHcccchhhHHHHHHHHHh-cCCCCCCE
Confidence                                   1125699999999999 999999 999999999999999999999954 33      


Q ss_pred             ----------------hhhhC-CCEEEEEecC-CcHHHHHhcCCCeeecCCCCCc-c-cccCCCCCcccEEEECCCCC-C
Q 048785          126 ----------------LAKLG-NSHVTATCGA-RNIEFVKSLGADEVLDYKTPDG-A-ALKSPSGRKYDAVIHCARGI-P  184 (280)
Q Consensus       126 ----------------la~~~-G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~-~-~~~~~~~~~~d~v~d~~g~~-~  184 (280)
                                      +++.. |++|++++++ ++.+.++++|++.++++++.+. + ..+.+..+++|++|||+|++ .
T Consensus       174 vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~  253 (347)
T 1jvb_A          174 LLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKT  253 (347)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCHHH
T ss_pred             EEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECCCCHHH
Confidence                            77788 9999999964 7888889999999998876542 1 22223214899999999987 6


Q ss_pred             cccccccccCCcEEEEeCCCc-hhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHH
Q 048785          185 WSTFEPNLAENGKVIDLTPTP-SAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDA  263 (280)
Q Consensus       185 ~~~~~~~l~~~g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a  263 (280)
                      ++.++++++++|+++.+|... ..  .++...+..++.++.+.. ....++++++++++++|++++.++++|+|+++++|
T Consensus       254 ~~~~~~~l~~~G~iv~~g~~~~~~--~~~~~~~~~~~~~i~g~~-~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A  330 (347)
T 1jvb_A          254 LSVYPKALAKQGKYVMVGLFGADL--HYHAPLITLSEIQFVGSL-VGNQSDFLGIMRLAEAGKVKPMITKTMKLEEANEA  330 (347)
T ss_dssp             HTTGGGGEEEEEEEEECCSSCCCC--CCCHHHHHHHTCEEEECC-SCCHHHHHHHHHHHHTTSSCCCCEEEEEGGGHHHH
T ss_pred             HHHHHHHHhcCCEEEEECCCCCCC--CCCHHHHHhCceEEEEEe-ccCHHHHHHHHHHHHcCCCCceEEEEEcHHHHHHH
Confidence            899999999999999998544 22  233344556777777654 34678899999999999999999999999999999


Q ss_pred             HHHHhcCCCcCcEEEeC
Q 048785          264 WAKGADGHATGKIILEP  280 (280)
Q Consensus       264 ~~~~~~~~~~gkvvi~~  280 (280)
                      |+.+.+++..||+|+++
T Consensus       331 ~~~~~~~~~~gKvvl~~  347 (347)
T 1jvb_A          331 IDNLENFKAIGRQVLIP  347 (347)
T ss_dssp             HHHHHTTCCCSEEEEEC
T ss_pred             HHHHHCCCCcceEEecC
Confidence            99999998889999975

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.6e-45  Score=312.54  Aligned_cols=273  Identities=26%  Similarity=0.337  Sum_probs=223.0

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +++|.|+|+++||+|||.++|||++|+.+..|..+.  ...+|.++|||++|+|+++|++|++|++||+|++...  ..|
T Consensus        48 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~~~P~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~--~~G  123 (351)
T 1yb5_A           48 SDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSR--KPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSST--ISG  123 (351)
T ss_dssp             EEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSC--CCCSSBCCCSCEEEEEEEECTTCTTCCTTCEEEESCC--SSC
T ss_pred             eecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC--CCCCCCcCCceeEEEEEEECCCCCCCCCCCEEEEeCC--CCC
Confidence            477889999999999999999999999998886532  2357899999999999999999999999999988632  369


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEec
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCG  139 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~  139 (280)
                      +|+||+++|++.++++|+++++++||+++++++|||+++.+.++                      +++..|++|+++++
T Consensus       124 ~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~  203 (351)
T 1yb5_A          124 GYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG  203 (351)
T ss_dssp             SSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             cceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence            99999999999999999999999999999999999999965433                      78889999999996


Q ss_pred             C-CcHHHHHhcCCCeeecCCCCC-c-ccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhh
Q 048785          140 A-RNIEFVKSLGADEVLDYKTPD-G-AALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKL  216 (280)
Q Consensus       140 ~-~~~~~~~~~g~~~v~~~~~~~-~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  216 (280)
                      + ++.+.++++|++.++++++.+ . ...+.+.++++|++|||+|++.+..++++++++|+++.+|....  ..+....+
T Consensus       204 ~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~  281 (351)
T 1yb5_A          204 TEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRGT--IEINPRDT  281 (351)
T ss_dssp             SHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCCCSC--EEECTHHH
T ss_pred             ChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCChHHHHHHHHhccCCCEEEEEecCCC--CccCHHHH
Confidence            5 788889999999999887655 2 23333455689999999998888899999999999999985422  11222334


Q ss_pred             hccceeeEEEEE-cCCHH----HHHHHHHHHHCCCeeEeccceecchhHHHHHHH-HhcCCCcCcEEEeC
Q 048785          217 TFSKKQLVPLLV-IPKGE----NLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAK-GADGHATGKIILEP  280 (280)
Q Consensus       217 ~~~~~~~~~~~~-~~~~~----~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~-~~~~~~~gkvvi~~  280 (280)
                      ..++.++.++.. ....+    .++.+.+++++|+++++++++|+++++++||+. +.++...||+|+++
T Consensus       282 ~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~~gKvvi~~  351 (351)
T 1yb5_A          282 MAKESSIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  351 (351)
T ss_dssp             HTTTCEEEECCGGGCCHHHHHHHHHHHHHHHHHTCCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             HhCCcEEEEEEeecCCHHHHHHHHHHHHHHHHCCCccCccceEEcHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            556777776532 11233    345566788899999999999999999999998 66667789999975

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.6e-45  Score=313.09  Aligned_cols=272  Identities=21%  Similarity=0.217  Sum_probs=223.6

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      +|+|.|+|+++||+|||.+++||++|+.++.|..+    ..+|.++|||++|+|+++|++|++|++||+|++..      
T Consensus        22 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~----~~~P~v~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~Cg~C   97 (371)
T 1f8f_A           22 QALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP----VPLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKC   97 (371)
T ss_dssp             EEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC----CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECCCCCSSS
T ss_pred             EEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC----CCCCcccCcccceEEEEeCCCCCCCCCCCEEEecCCCCCCC
Confidence            57888999999999999999999999999988653    35789999999999999999999999999998731      


Q ss_pred             ----------------------------------c------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHH
Q 048785           76 ----------------------------------N------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLT  115 (280)
Q Consensus        76 ----------------------------------~------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~  115 (280)
                                                        +      ....|+|+||+++|++.++++|+++++++||++++++.|
T Consensus        98 ~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~t  177 (371)
T 1f8f_A           98 TQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQT  177 (371)
T ss_dssp             HHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECTTSCGGGTGGGGTHHHH
T ss_pred             hhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheEECCCCCCHHHHHHhcchHHH
Confidence                                              0      012589999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCC-cc-cccCCCC
Q 048785          116 ALEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPD-GA-ALKSPSG  170 (280)
Q Consensus       116 a~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~  170 (280)
                      ||+++.+.++                     +|+.+|+ +|+++++ +++.++++++|+++++++++.+ .+ ..+.+.+
T Consensus       178 a~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~g  257 (371)
T 1f8f_A          178 GAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDG  257 (371)
T ss_dssp             HHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTS
T ss_pred             HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCC
Confidence            9999965433                     8889999 7999985 4789999999999999987765 22 3333445


Q ss_pred             CcccEEEECCCCC-CcccccccccCCcEEEEeCCCch-hhHHHHHhhhhccceeeEEEEEcC--CHHHHHHHHHHHHCCC
Q 048785          171 RKYDAVIHCARGI-PWSTFEPNLAENGKVIDLTPTPS-AMLTFAWQKLTFSKKQLVPLLVIP--KGENLVFLVKLLKEGK  246 (280)
Q Consensus       171 ~~~d~v~d~~g~~-~~~~~~~~l~~~g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~g~  246 (280)
                       ++|++|||+|++ .++.++++++++|+++.+|.... ....++...+..++.++.+.....  ..++++++++++++|+
T Consensus       258 -g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~  336 (371)
T 1f8f_A          258 -GVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGK  336 (371)
T ss_dssp             -CEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGSCHHHHHHHHHHHHHTTS
T ss_pred             -CCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCCCccccCHHHHHhCCCEEEEeCCCCCchHHHHHHHHHHHHcCC
Confidence             899999999984 58899999999999999986542 122233344556777777654321  2478999999999999


Q ss_pred             eeE--eccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          247 IKT--LIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       247 ~~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      +++  ++++ |+|+++++||+.+.+++. +|+|+++
T Consensus       337 l~~~~~i~~-~~l~~~~~A~~~~~~~~~-~Kvvv~~  370 (371)
T 1f8f_A          337 FPFDQLVKF-YAFDEINQAAIDSRKGIT-LKPIIKI  370 (371)
T ss_dssp             CCGGGGEEE-EEGGGHHHHHHHHHHTSC-SEEEEEC
T ss_pred             CCcccceeE-ecHHHHHHHHHHHHCCCc-eEEEEee
Confidence            975  5777 999999999999988775 7999875

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-44  Score=306.84  Aligned_cols=273  Identities=21%  Similarity=0.274  Sum_probs=225.1

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      +++|.|+|+++||+|||.++|||++|+.++.|..+.  ...+|.++|||++|+|+++|++|++|++||||++..      
T Consensus        21 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~v~G~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~~cg   98 (347)
T 2hcy_A           21 KDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPL--PVKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCM   98 (347)
T ss_dssp             EEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS--CCCSSEECCCEEEEEEEEECTTCCSCCTTCEEEECSEEECCS
T ss_pred             EEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCC--CCCCCcccCccceEEEEEECCCCCCCcCCCEEEEecCCCCCC
Confidence            578899999999999999999999999999886541  236789999999999999999999999999998631      


Q ss_pred             -------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh-----------
Q 048785           76 -------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-----------  125 (280)
Q Consensus        76 -------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----------  125 (280)
                                         +....|+|+||+.+|++.++++|+++++++||+++++++|||+++.+. +           
T Consensus        99 ~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~g~~vlV~G  177 (347)
T 2hcy_A           99 ACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSA-NLMAGHWVAISG  177 (347)
T ss_dssp             SSTTTTTTCGGGCTTCEEBTTTBCCSSBSEEEEETTTSEEECTTCCHHHHGGGGTHHHHHHHHHHTT-TCCTTCEEEEET
T ss_pred             CChhhhCCCcccCccccccccCCCCcceeEEEeccccEEECCCCCCHHHHHHHhhhHHHHHHHHHhc-CCCCCCEEEEEC
Confidence                               123479999999999999999999999999999999999999999643 2           


Q ss_pred             -----------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCC-CC-cccc-cCCCCCcccEEEECCCC-CCccccc
Q 048785          126 -----------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKT-PD-GAAL-KSPSGRKYDAVIHCARG-IPWSTFE  189 (280)
Q Consensus       126 -----------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~-~~-~~~~-~~~~~~~~d~v~d~~g~-~~~~~~~  189 (280)
                                 +++..|++|+++++ +++.+.++++|++.++|+.+ .+ .+.+ +.+.+ ++|++||++|. ..++.++
T Consensus       178 a~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~-~~D~vi~~~g~~~~~~~~~  256 (347)
T 2hcy_A          178 AAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDG-GAHGVINVSVSEAAIEAST  256 (347)
T ss_dssp             TTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTS-CEEEEEECSSCHHHHHHHT
T ss_pred             CCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCC-CCCEEEECCCcHHHHHHHH
Confidence                       77788999999995 57888889999999988763 33 2222 22334 89999999998 5688999


Q ss_pred             ccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhc
Q 048785          190 PNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGAD  269 (280)
Q Consensus       190 ~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~  269 (280)
                      ++|+++|+++.+|........++...+..+++++.++. ....++++++++++++|++++. .++|+++++++||+.+.+
T Consensus       257 ~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~-~~~~~~~~~~~~l~~~g~l~~~-~~~~~l~~~~~A~~~~~~  334 (347)
T 2hcy_A          257 RYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSY-VGNRADTREALDFFARGLVKSP-IKVVGLSTLPEIYEKMEK  334 (347)
T ss_dssp             TSEEEEEEEEECCCCTTCEEEEEHHHHHHTTCEEEECC-CCCHHHHHHHHHHHHTTSCCCC-EEEEEGGGHHHHHHHHHT
T ss_pred             HHHhcCCEEEEEeCCCCCCCCCCHHHHhhCCcEEEEcc-CCCHHHHHHHHHHHHhCCCccc-eEEEcHHHHHHHHHHHHc
Confidence            99999999999986543222233344556777777754 3467889999999999999886 469999999999999999


Q ss_pred             CCCcCcEEEeC
Q 048785          270 GHATGKIILEP  280 (280)
Q Consensus       270 ~~~~gkvvi~~  280 (280)
                      ++..||+|+++
T Consensus       335 ~~~~gKvvv~~  345 (347)
T 2hcy_A          335 GQIVGRYVVDT  345 (347)
T ss_dssp             TCCSSEEEEES
T ss_pred             CCcceeEEEec
Confidence            88889999874

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.7e-45  Score=312.19  Aligned_cols=272  Identities=17%  Similarity=0.180  Sum_probs=220.5

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHH-hHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWK-IKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN----   76 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~-~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~----   76 (280)
                      +++|.|+|+++||+|||.+++||++|+. ++.|..+    ..+|.++|||++|+|+++|++|++|++||||++...    
T Consensus        24 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~----~~~P~v~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg   99 (374)
T 1cdo_A           24 EEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK----DGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCG   99 (374)
T ss_dssp             EEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT----TSCSEECCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCS
T ss_pred             EEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC----CCCCcccCccceEEEEEECCCCccCCCCCEEEeCCCCCCC
Confidence            5778899999999999999999999999 8888653    367899999999999999999999999999987521    


Q ss_pred             -----------------------C------------------CCCCcceeEEeecccccccCCCCCChhhhcccchhHHH
Q 048785           77 -----------------------H------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLT  115 (280)
Q Consensus        77 -----------------------~------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~  115 (280)
                                             .                  ...|+|+||+++|++.++++|+++++++||++++++.|
T Consensus       100 ~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~t  179 (374)
T 1cdo_A          100 ECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVST  179 (374)
T ss_dssp             SSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHH
T ss_pred             CChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeEEEEchhheEECCCCCCHHHHhhhccHHHH
Confidence                                   0                  02489999999999999999999999999999999999


Q ss_pred             HHHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCC--CC-cccc-cCC
Q 048785          116 ALEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKT--PD-GAAL-KSP  168 (280)
Q Consensus       116 a~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~--~~-~~~~-~~~  168 (280)
                      ||+++.+.++                     +|+.+|+ +|+++++ ++++++++++|+++++++++  .+ .+.+ +.+
T Consensus       180 a~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~  259 (374)
T 1cdo_A          180 GFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMT  259 (374)
T ss_dssp             HHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHh
Confidence            9999865443                     8899999 8999985 58999999999999998875  22 2222 233


Q ss_pred             CCCcccEEEECCCC-CCcccccccccCC-cEEEEeCCCchhhHHHHHhhhhccceeeEEEEEc--CCHHHHHHHHHHHHC
Q 048785          169 SGRKYDAVIHCARG-IPWSTFEPNLAEN-GKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVI--PKGENLVFLVKLLKE  244 (280)
Q Consensus       169 ~~~~~d~v~d~~g~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~  244 (280)
                      .+ ++|++|||+|+ ..++.++++++++ |+++.+|........+....+..++ ++.+....  ...++++++++++++
T Consensus       260 ~~-g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~  337 (374)
T 1cdo_A          260 NG-GVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGR-TWKGSMFGGFKGKDGVPKMVKAYLD  337 (374)
T ss_dssp             TS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHT
T ss_pred             CC-CCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCCCCcccCHHHHhcCC-eEEEEecCCCCcHHHHHHHHHHHHc
Confidence            33 89999999998 4588999999999 9999998654311112222334455 66654321  135789999999999


Q ss_pred             CCee--EeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          245 GKIK--TLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       245 g~~~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      |+++  ++++++|+|+++++||+.+.+++. +|++|++
T Consensus       338 g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  374 (374)
T 1cdo_A          338 KKVKLDEFITHRMPLESVNDAIDLMKHGKC-IRTVLSL  374 (374)
T ss_dssp             TSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             CCCChHHheeeEecHHHHHHHHHHHHCCCe-eEEEEeC
Confidence            9987  577899999999999999988875 6999875

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=7.7e-45  Score=311.58  Aligned_cols=271  Identities=18%  Similarity=0.189  Sum_probs=220.2

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      +++|.|+|+++||+|||.+++||++|++++.|. +   ...+|.++|||++|+|+++|++|++|++||||++..      
T Consensus        24 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~---~~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~   99 (376)
T 1e3i_A           24 EEIEVSPPKACEVRIQVIATCVCPTDINATDPK-K---KALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKR   99 (376)
T ss_dssp             EEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-S---CCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSS
T ss_pred             EEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-C---CCCCCcccCccccEEEEEECCCCccCCCCCEEEECCcCCCCC
Confidence            577889999999999999999999999988886 2   136789999999999999999999999999998742      


Q ss_pred             -------------------------cCC------------------CCCcceeEEeecccccccCCCCCChhhhcccchh
Q 048785           76 -------------------------NHF------------------SGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLA  112 (280)
Q Consensus        76 -------------------------~~~------------------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~  112 (280)
                                               +..                  ..|+|+||+++|++.++++|+++++++||+++++
T Consensus       100 C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~  179 (376)
T 1e3i_A          100 CKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCG  179 (376)
T ss_dssp             SHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTH
T ss_pred             CccccCCCcccCcCcCccccccccccccccCccccccCCcccccccCCccceeEEEeccccEEECCCCCCHHHhhhhccH
Confidence                                     100                  2489999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCC--CC-cc-cc
Q 048785          113 GLTALEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKT--PD-GA-AL  165 (280)
Q Consensus       113 ~~~a~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~--~~-~~-~~  165 (280)
                      +.|||+++.+.++                     +|+.+|+ +|+++++ ++++++++++|+++++++++  .+ .+ ..
T Consensus       180 ~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~  259 (376)
T 1e3i_A          180 FSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVIT  259 (376)
T ss_dssp             HHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHH
Confidence            9999999865433                     8999999 8999985 58999999999999999875  22 22 22


Q ss_pred             cCCCCCcccEEEECCCC-CCcccccccccCC-cEEEEeCCCchhhHHHHHhhhhccceeeEEEEEc--CCHHHHHHHHHH
Q 048785          166 KSPSGRKYDAVIHCARG-IPWSTFEPNLAEN-GKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVI--PKGENLVFLVKL  241 (280)
Q Consensus       166 ~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  241 (280)
                      +.+.+ ++|++|||+|+ ..++.++++++++ |+++.+|.... ...++...+..++ ++.+....  ...+++++++++
T Consensus       260 ~~~~~-g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~~~-~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l  336 (376)
T 1e3i_A          260 ELTAG-GVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVD-EMTIPTVDVILGR-SINGTFFGGWKSVDSVPNLVSD  336 (376)
T ss_dssp             HHHTS-CBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSS-EEEEEHHHHHTTC-EEEECSGGGCCHHHHHHHHHHH
T ss_pred             HHhCC-CccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCCCC-ccccCHHHhhccC-eEEEEecCCCCcHHHHHHHHHH
Confidence            33344 89999999998 4588999999999 99999986322 1222233344455 66654321  135789999999


Q ss_pred             HHCCCee--EeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          242 LKEGKIK--TLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       242 i~~g~~~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      +++|+++  ++++++|+|+++++||+.+.+++. +|+++++
T Consensus       337 ~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~Kvvi~~  376 (376)
T 1e3i_A          337 YKNKKFDLDLLVTHALPFESINDAIDLMKEGKS-IRTILTF  376 (376)
T ss_dssp             HHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             HHcCCCCcHHhEeeeecHHHHHHHHHHHhcCCc-ceEEEeC
Confidence            9999986  577899999999999999988774 7999875

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=8.4e-45  Score=311.12  Aligned_cols=273  Identities=17%  Similarity=0.151  Sum_probs=220.9

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      +++|.|+|+++||+|||.++|||++|++++.|..+.   ..+|.++|||++|+|+++|++|++|++||||++..      
T Consensus        22 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~~P~v~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~   98 (373)
T 2fzw_A           22 EEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPE---GCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGE   98 (373)
T ss_dssp             EEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTT---CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCSC
T ss_pred             EEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCC---CCCCccccccccEEEEEECCCCCCCCCCCEEEECCCCCCCC
Confidence            577889999999999999999999999999887542   35789999999999999999999999999998752      


Q ss_pred             ---------------------cC------------------CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHH
Q 048785           76 ---------------------NH------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTA  116 (280)
Q Consensus        76 ---------------------~~------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a  116 (280)
                                           +.                  ...|+|+||+++|++.++++|+++++++||++++++.||
T Consensus        99 C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta  178 (373)
T 2fzw_A           99 CKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTG  178 (373)
T ss_dssp             SHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHH
T ss_pred             ChHHcCcCcccCCCcccccccccccCCcccccccccccccccCCccceeEEEEchhheEECCCCCCHHHHhhhccHHHHH
Confidence                                 10                  024899999999999999999999999999999999999


Q ss_pred             HHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCC--CC-cc-cccCCC
Q 048785          117 LEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKT--PD-GA-ALKSPS  169 (280)
Q Consensus       117 ~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~--~~-~~-~~~~~~  169 (280)
                      |+++.+.++                     +|+.+|+ +|+++++ +++.++++++|+++++++++  .+ .+ ..+.+.
T Consensus       179 ~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~  258 (373)
T 2fzw_A          179 YGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTD  258 (373)
T ss_dssp             HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred             HHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhC
Confidence            999865433                     8889999 8999985 58999999999999998875  22 22 223334


Q ss_pred             CCcccEEEECCCC-CCcccccccccCC-cEEEEeCCCch-hhHHHHHhhhhccceeeEEEEEc--CCHHHHHHHHHHHHC
Q 048785          170 GRKYDAVIHCARG-IPWSTFEPNLAEN-GKVIDLTPTPS-AMLTFAWQKLTFSKKQLVPLLVI--PKGENLVFLVKLLKE  244 (280)
Q Consensus       170 ~~~~d~v~d~~g~-~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~  244 (280)
                      + ++|++|||+|+ ..+..++++++++ |+++.+|.... ....+....+..++ ++.+....  ...++++++++++++
T Consensus       259 ~-g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~  336 (373)
T 2fzw_A          259 G-GVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGR-TWKGTAFGGWKSVESVPKLVSEYMS  336 (373)
T ss_dssp             S-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHT
T ss_pred             C-CCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCCceeeeCHHHHhcCC-EEEEeccCCCCcHHHHHHHHHHHHc
Confidence            4 89999999998 4588999999999 99999985432 11112222333455 66654321  135789999999999


Q ss_pred             CCee--EeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          245 GKIK--TLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       245 g~~~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      |+++  ++++++|+|+++++||+.+.+++. +|+++++
T Consensus       337 g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  373 (373)
T 2fzw_A          337 KKIKVDEFVTHNLSFDEINKAFELMHSGKS-IRTVVKI  373 (373)
T ss_dssp             TSSCSGGGEEEEEEGGGHHHHHHHHHHTCC-SEEEEEC
T ss_pred             CCCCchheEeEEeeHHHHHHHHHHHhCCCc-ceEEEeC
Confidence            9987  577899999999999999988775 6999875

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=1.4e-44  Score=309.80  Aligned_cols=272  Identities=17%  Similarity=0.161  Sum_probs=220.2

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      +++|.|+|+++||+|||.+++||++|++++.|..+.    .+|.++|||++|+|+++|++|++|++||||++..      
T Consensus        24 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~----~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~   99 (374)
T 2jhf_A           24 EEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT----PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGK   99 (374)
T ss_dssp             EEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC----CSSBCCCCSEEEEEEEECTTCCSCCTTCEEEECSSCCCSC
T ss_pred             EEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCC----CCCcccCcCceEEEEEECCCCCCCCCCCEEEECCCCCCCC
Confidence            577889999999999999999999999999886541    3789999999999999999999999999998752      


Q ss_pred             ---------------------cC------------------CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHH
Q 048785           76 ---------------------NH------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTA  116 (280)
Q Consensus        76 ---------------------~~------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a  116 (280)
                                           +.                  ...|+|+||+++|++.++++|+++++++||++++++.||
T Consensus       100 C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta  179 (374)
T 2jhf_A          100 CRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG  179 (374)
T ss_dssp             SHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHH
T ss_pred             CccccCCCcCcCCCCccccccccccCCcccccccccccccccCCccCeeEEEEchHHeEECCCCCCHHHhhhhccHHHHH
Confidence                                 10                  024899999999999999999999999999999999999


Q ss_pred             HHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCC--CC-cccc-cCCC
Q 048785          117 LEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKT--PD-GAAL-KSPS  169 (280)
Q Consensus       117 ~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~--~~-~~~~-~~~~  169 (280)
                      |+++.+.++                     +|+.+|+ +|+++++ +++.++++++|+++++++++  .+ .+.+ +.+.
T Consensus       180 ~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~  259 (374)
T 2jhf_A          180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSN  259 (374)
T ss_dssp             HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred             HHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhC
Confidence            999865433                     8899999 8999985 58999999999999998875  22 2222 2333


Q ss_pred             CCcccEEEECCCC-CCcccccccccCC-cEEEEeCCCch-hhHHHHHhhhhccceeeEEEEEc--CCHHHHHHHHHHHHC
Q 048785          170 GRKYDAVIHCARG-IPWSTFEPNLAEN-GKVIDLTPTPS-AMLTFAWQKLTFSKKQLVPLLVI--PKGENLVFLVKLLKE  244 (280)
Q Consensus       170 ~~~~d~v~d~~g~-~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~  244 (280)
                      + ++|++|||+|+ ..+..++++++++ |+++.+|.... ....+....+..++ ++.+....  ...++++++++++++
T Consensus       260 ~-g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~  337 (374)
T 2jhf_A          260 G-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGR-TWKGAIFGGFKSKDSVPKLVADFMA  337 (374)
T ss_dssp             S-CBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHT
T ss_pred             C-CCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCCCccccCHHHHhcCC-eEEEeccCCCChHHHHHHHHHHHHc
Confidence            4 89999999998 4588999999999 99999985442 11122222334455 66654321  135789999999999


Q ss_pred             CCee--EeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          245 GKIK--TLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       245 g~~~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      |+++  ++++++|+|+++++||+.+.+++. +|+++++
T Consensus       338 g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~Kvvi~~  374 (374)
T 2jhf_A          338 KKFALDPLITHVLPFEKINEGFDLLRSGES-IRTILTF  374 (374)
T ss_dssp             TSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             CCCCchhheEEEEeHHHHHHHHHHHHCCCc-ceEEEeC
Confidence            9987  577899999999999999988775 6999875

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=1.1e-44  Score=310.22  Aligned_cols=271  Identities=20%  Similarity=0.208  Sum_probs=219.3

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      +|+|.|+|+++||+|||.+++||++|++++.|..+    ..+|.++|||++|+|+++|++|++|++||||++..      
T Consensus        25 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~----~~~P~v~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~  100 (373)
T 1p0f_A           25 ETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP----SKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGS  100 (373)
T ss_dssp             EEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC----CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCSS
T ss_pred             EEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC----CCCCcccCcCceEEEEEECCCCCccCCCCEEEECCCCCCCC
Confidence            57888999999999999999999999999988653    36789999999999999999999999999998752      


Q ss_pred             ---------------------cC------------------CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHH
Q 048785           76 ---------------------NH------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTA  116 (280)
Q Consensus        76 ---------------------~~------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a  116 (280)
                                           +.                  ...|+|+||+++|++.++++|++++++ ||++++++.||
T Consensus       101 C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~-aa~l~~~~~ta  179 (373)
T 1p0f_A          101 CRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATG  179 (373)
T ss_dssp             SHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEECTTCCGG-GGGGGTHHHHH
T ss_pred             ChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEEEEchhhEEECCCCCChh-hhhhhhHHHHH
Confidence                                 11                  024899999999999999999999999 99999999999


Q ss_pred             HHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCC--CC-cc-cccCCC
Q 048785          117 LEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKT--PD-GA-ALKSPS  169 (280)
Q Consensus       117 ~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~--~~-~~-~~~~~~  169 (280)
                      |+++.+.++                     +|+.+|+ +|+++++ ++++++++++|+++++++++  .+ .+ ..+.+.
T Consensus       180 ~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~  259 (373)
T 1p0f_A          180 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTN  259 (373)
T ss_dssp             HHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred             HHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhC
Confidence            999865443                     8899999 8999985 58999999999999999874  22 22 223344


Q ss_pred             CCcccEEEECCCC-CCcccccccccCC-cEEEEeCCCch-hhHHHHHhhhhccceeeEEEEEc-CCHHHHHHHHHHHHCC
Q 048785          170 GRKYDAVIHCARG-IPWSTFEPNLAEN-GKVIDLTPTPS-AMLTFAWQKLTFSKKQLVPLLVI-PKGENLVFLVKLLKEG  245 (280)
Q Consensus       170 ~~~~d~v~d~~g~-~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~g  245 (280)
                      + ++|++|||+|+ ..+..++++++++ |+++.+|.... ....+....+..++ ++.+.... ...++++++++++++|
T Consensus       260 g-g~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~l~~~g  337 (373)
T 1p0f_A          260 G-GVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGR-SLKGSVFGGFKGEEVSRLVDDYMKK  337 (373)
T ss_dssp             S-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTC-EEEECSGGGCCGGGHHHHHHHHHTT
T ss_pred             C-CCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCCCccccCHHHhccCc-eEEeeccCCcCHHHHHHHHHHHHcC
Confidence            4 89999999998 4588999999999 99999985442 11112222333444 66554321 1247899999999999


Q ss_pred             Cee--EeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          246 KIK--TLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       246 ~~~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      +++  ++++++|+|+++++||+.+.+++. +|+++++
T Consensus       338 ~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  373 (373)
T 1p0f_A          338 KINVNFLVSTKLTLDQINKAFELLSSGQG-VRSIMIY  373 (373)
T ss_dssp             SSCGGGGEEEEECGGGHHHHHHHTTTSSC-SEEEEEC
T ss_pred             CCCchheEEEEeeHHHHHHHHHHHHCCCc-ceEEEeC
Confidence            987  577899999999999999988775 7999875

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=3.6e-45  Score=310.47  Aligned_cols=274  Identities=23%  Similarity=0.256  Sum_probs=224.2

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhc-cCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-----
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKG-VARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-----   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g-~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----   75 (280)
                      +|+|.|+|+++||+|||.+++||++|++++.| ..+. ....+|.++|||++|+|+++|++|++|++||||++..     
T Consensus        20 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg   98 (348)
T 2d8a_A           20 VEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQ-SRIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCG   98 (348)
T ss_dssp             EEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHH-HHCCSSEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCS
T ss_pred             EECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCc-ccCCCCCccCccceEEEEEECCCCCcCCCCCEEEEcCCCCCC
Confidence            57889999999999999999999999999988 3210 0125789999999999999999999999999998752     


Q ss_pred             -------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh-----------
Q 048785           76 -------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG-----------  125 (280)
Q Consensus        76 -------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~-----------  125 (280)
                                         +....|+|+||+++|++.++++|+++++++||+++ ++.|||+++. .++           
T Consensus        99 ~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~-~~~ta~~~l~-~~~~~g~~VlV~Ga  176 (348)
T 2d8a_A           99 KCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQE-PLGNAVDTVL-AGPISGKSVLITGA  176 (348)
T ss_dssp             CCC------------CEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHTTHH-HHHHHHHHHT-TSCCTTCCEEEECC
T ss_pred             CChhhhCcCcccCCCCCeecCCCCCcCcceEEeChHHeEECCCCCCHHHHHhhh-HHHHHHHHHH-hcCCCCCEEEEECC
Confidence                               12356999999999999999999999999999885 6679999993 321           


Q ss_pred             ---------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCCCCC-c-ccccCCCCCcccEEEECCCC-CCccccccc
Q 048785          126 ---------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYKTPD-G-AALKSPSGRKYDAVIHCARG-IPWSTFEPN  191 (280)
Q Consensus       126 ---------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~-~-~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~  191 (280)
                               +|+.+|+ +|++++++ ++.++++++|+++++++++.+ . ...+.+.++++|++|||+|+ ..++.++++
T Consensus       177 G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~  256 (348)
T 2d8a_A          177 GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQA  256 (348)
T ss_dssp             SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHH
Confidence                     8889999 99999965 788999999999999987655 2 23344566789999999998 558899999


Q ss_pred             ccCCcEEEEeCCCchhhHHHHH-hhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCe--eEeccceec-chhHHHHHHHH
Q 048785          192 LAENGKVIDLTPTPSAMLTFAW-QKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKI--KTLIDSKHL-LSKAEDAWAKG  267 (280)
Q Consensus       192 l~~~g~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~--~~~~~~~~~-~~~~~~a~~~~  267 (280)
                      ++++|+++.+|.... ...++. ..+..+++++.+.......++++++++++++|++  +++++++|+ |+++++||+.+
T Consensus       257 l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~  335 (348)
T 2d8a_A          257 VTPAGRVSLLGLYPG-KVTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELM  335 (348)
T ss_dssp             EEEEEEEEECCCCSS-CCCCCHHHHTTTTTCEEEECCCCCSHHHHHHHHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHH
T ss_pred             HhcCCEEEEEccCCC-CcccCchHHHHhCCcEEEEecCCCcHHHHHHHHHHHHcCCCChHHhheeeCCCHHHHHHHHHHH
Confidence            999999999986543 222333 4566778888775432227889999999999995  577889999 99999999999


Q ss_pred             hcCCCcCcEEEeC
Q 048785          268 ADGHATGKIILEP  280 (280)
Q Consensus       268 ~~~~~~gkvvi~~  280 (280)
                      .+ ...+|+|+++
T Consensus       336 ~~-~~~gKvvi~~  347 (348)
T 2d8a_A          336 RA-GKTGKVVFML  347 (348)
T ss_dssp             HT-TCCSEEEEEC
T ss_pred             hC-CCceEEEEee
Confidence            77 5678999875

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=5e-45  Score=310.46  Aligned_cols=273  Identities=20%  Similarity=0.219  Sum_probs=220.5

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-----   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----   75 (280)
                      ++|+|.|+|+++||+|||.++|||++|+.++.|.........+|.++|||++|+|+++|++|++|++||||++..     
T Consensus        21 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~~~~vGdrV~~~~~~~cg  100 (356)
T 1pl8_A           21 LENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRE  100 (356)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSCCTTCEEEECSEECSS
T ss_pred             EEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCCCCCCCCEEEEeccCCCC
Confidence            357889999999999999999999999998875321111125789999999999999999999999999998741     


Q ss_pred             -------------------cC-CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------
Q 048785           76 -------------------NH-FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------  125 (280)
Q Consensus        76 -------------------~~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------  125 (280)
                                         +. ...|+|+||+.+|++.++++|+++++++||++ .++.|||+++ +.++          
T Consensus       101 ~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~  178 (356)
T 1pl8_A          101 NDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALI-EPLSVGIHAC-RRGGVTLGHKVLVC  178 (356)
T ss_dssp             CCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEE
T ss_pred             CChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEECcCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEE
Confidence                               11 24799999999999999999999999999876 4667999999 4433          


Q ss_pred             -----------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCCC---CC-c-ccccCCCCCcccEEEECCCCC-Ccc
Q 048785          126 -----------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYKT---PD-G-AALKSPSGRKYDAVIHCARGI-PWS  186 (280)
Q Consensus       126 -----------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~~---~~-~-~~~~~~~~~~~d~v~d~~g~~-~~~  186 (280)
                                 +|+.+|+ +|++++++ ++.++++++|++++++++.   .+ . .....+. +++|++|||+|++ .+.
T Consensus       179 GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~-~g~D~vid~~g~~~~~~  257 (356)
T 1pl8_A          179 GAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLG-CKPEVTIECTGAEASIQ  257 (356)
T ss_dssp             CCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHT-SCCSEEEECSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhC-CCCCEEEECCCChHHHH
Confidence                       8899999 99999964 7889999999999999872   22 1 2222333 6899999999986 588


Q ss_pred             cccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCee--EeccceecchhHHHHH
Q 048785          187 TFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIK--TLIDSKHLLSKAEDAW  264 (280)
Q Consensus       187 ~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~--~~~~~~~~~~~~~~a~  264 (280)
                      .++++++++|+++.+|.... ...++...+.++++++.+...  ..++++++++++++|+++  ++++++|+++++++||
T Consensus       258 ~~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~  334 (356)
T 1pl8_A          258 AGIYATRSGGTLVLVGLGSE-MTTVPLLHAAIREVDIKGVFR--YCNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAF  334 (356)
T ss_dssp             HHHHHSCTTCEEEECSCCCS-CCCCCHHHHHHTTCEEEECCS--CSSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHH
T ss_pred             HHHHHhcCCCEEEEEecCCC-CCccCHHHHHhcceEEEEecc--cHHHHHHHHHHHHcCCCChHHheEEEecHHHHHHHH
Confidence            99999999999999985432 122334556677888777543  256789999999999964  6788999999999999


Q ss_pred             HHHhcCCCcCcEEEeC
Q 048785          265 AKGADGHATGKIILEP  280 (280)
Q Consensus       265 ~~~~~~~~~gkvvi~~  280 (280)
                      +.+.++ ..+|+|+++
T Consensus       335 ~~~~~~-~~gKvvi~~  349 (356)
T 1pl8_A          335 ETFKKG-LGLKIMLKC  349 (356)
T ss_dssp             HHHHTT-CCSEEEEEC
T ss_pred             HHHhCC-CceEEEEeC
Confidence            999988 789999874

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=1.7e-45  Score=311.89  Aligned_cols=274  Identities=20%  Similarity=0.234  Sum_probs=223.6

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      +|+|.|+|+++||+|||.++|||++|+.++.|..+......+|.++|||++|+|+++|++|++|++||||++..      
T Consensus        16 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~   95 (343)
T 2dq4_A           16 VDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHA   95 (343)
T ss_dssp             EECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSCTTCEEEECCEECCSC
T ss_pred             EeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCCCCCEEEECCCCCCCC
Confidence            57899999999999999999999999999988643100125789999999999999999999999999999742      


Q ss_pred             ------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh------------
Q 048785           76 ------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG------------  125 (280)
Q Consensus        76 ------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~------------  125 (280)
                                        +....|+|+||+.+|++.++++|+++++++||++ ..+.|||+++...++            
T Consensus        96 C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~~l~~~~~~~g~~VlV~GaG  174 (343)
T 2dq4_A           96 CPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAIL-EPFGNAVHTVYAGSGVSGKSVLITGAG  174 (343)
T ss_dssp             SHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCHHHHTTH-HHHHHHHHHHHSTTCCTTSCEEEECCS
T ss_pred             ChhhhCcCcccCCCcceecCCCCCcceeEEEEchHHeEECCCCCCHHHHHhh-hHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence                              2235799999999999999999999999999987 455699999962211            


Q ss_pred             --------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCCCCC-cc-cccCCCCCcccEEEECCCC-CCcccccccc
Q 048785          126 --------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCARG-IPWSTFEPNL  192 (280)
Q Consensus       126 --------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l  192 (280)
                              +|+.+|+ +|++++++ ++.++++++ +++++++++.+ .+ ..+.+ ++++|++|||+|+ ..++.+++++
T Consensus       175 ~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~-~~g~D~vid~~g~~~~~~~~~~~l  252 (343)
T 2dq4_A          175 PIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVT-GSGVEVLLEFSGNEAAIHQGLMAL  252 (343)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHH-SSCEEEEEECSCCHHHHHHHHHHE
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhc-CCCCCEEEECCCCHHHHHHHHHHH
Confidence                    8899999 99999965 788888899 99999987655 22 22334 6789999999998 5688999999


Q ss_pred             cCCcEEEEeCCCchhhHHHHH-hhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCe--eEeccceecchhHHHHHHHHhc
Q 048785          193 AENGKVIDLTPTPSAMLTFAW-QKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKI--KTLIDSKHLLSKAEDAWAKGAD  269 (280)
Q Consensus       193 ~~~g~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~--~~~~~~~~~~~~~~~a~~~~~~  269 (280)
                      +++|+++.+|.... ...++. ..+..++.++.+.......++++++++++++|++  +++++++|+++++++||+.+.+
T Consensus       253 ~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~  331 (343)
T 2dq4_A          253 IPGGEARILGIPSD-PIRFDLAGELVMRGITAFGIAGRRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLAS  331 (343)
T ss_dssp             EEEEEEEECCCCSS-CEEECHHHHTGGGTCEEEECCSCCTTHHHHHHHHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHH
T ss_pred             hcCCEEEEEecCCC-CceeCcHHHHHhCceEEEEeecCCCHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhc
Confidence            99999999986432 222333 4566678888776432257789999999999994  6788899999999999999998


Q ss_pred             CCCcCcEEEeC
Q 048785          270 GHATGKIILEP  280 (280)
Q Consensus       270 ~~~~gkvvi~~  280 (280)
                      ++. +|+|+++
T Consensus       332 ~~~-gKvv~~~  341 (343)
T 2dq4_A          332 GQA-VKVILDP  341 (343)
T ss_dssp             SSC-SEEEEET
T ss_pred             CCc-eEEEEee
Confidence            877 9999875

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=4.6e-45  Score=319.64  Aligned_cols=278  Identities=23%  Similarity=0.267  Sum_probs=223.8

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHh-------------ccCCCC-CCCCCC-ccccccceEEEEEeCCCCCCC
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKK-------------GVARPI-LPRKFP-YIPATDVAGEIIEVGSEVKNF   65 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~-------------g~~~~~-~~~~~p-~~~G~e~~G~V~~vG~~v~~~   65 (280)
                      ++|+|.|+|+++||+|||.++|||++|++...             +..... ....+| .++|||++|+|+++|++|++|
T Consensus        52 ~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~  131 (447)
T 4a0s_A           52 LGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRW  131 (447)
T ss_dssp             EEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHHTTCGGGGGGCCSEEECCSCEEEEEEEECTTCCSC
T ss_pred             EEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhcccCccccccCCCCcccccceeEEEEEECCCCCCC
Confidence            35789999999999999999999999985421             111100 011456 699999999999999999999


Q ss_pred             CCCCEEEEeecC------------------------CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHH
Q 048785           66 KAGYNVVAILNH------------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT  121 (280)
Q Consensus        66 ~~Gd~V~~~~~~------------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  121 (280)
                      ++||+|++....                        ...|+|+||+++|++.++++|+++++++||+++++++|||+++.
T Consensus       132 ~vGDrV~~~~~~~~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~  211 (447)
T 4a0s_A          132 KPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLV  211 (447)
T ss_dssp             CTTCEEEECSEECCTTSGGGGTCTTCSTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHT
T ss_pred             CCCCEEEEecCcCcCcccccccccccccccccccccCCCCceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHH
Confidence            999999975310                        12599999999999999999999999999999999999999995


Q ss_pred             hh--hh----------------------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCC---------------
Q 048785          122 QS--AG----------------------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPD---------------  161 (280)
Q Consensus       122 ~~--~~----------------------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~---------------  161 (280)
                      ..  ++                      +|+..|++|++++++ ++.++++++|++.++++.+.+               
T Consensus       212 ~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~  291 (447)
T 4a0s_A          212 SDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVET  291 (447)
T ss_dssp             STTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHH
T ss_pred             hhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchh
Confidence            32  22                      888999999988854 789999999999998864432               


Q ss_pred             ----cc-cccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHH
Q 048785          162 ----GA-ALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLV  236 (280)
Q Consensus       162 ----~~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (280)
                          .+ ..+.+ ++++|++|||+|+..++.++++++++|+++.+|........+....+..++.++.+.. ....+++.
T Consensus       292 ~~~~~~~v~~~~-g~g~Dvvid~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~-~~~~~~~~  369 (447)
T 4a0s_A          292 GRKLAKLVVEKA-GREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSH-GANHEEQQ  369 (447)
T ss_dssp             HHHHHHHHHHHH-SSCCSEEEECSCHHHHHHHHHHSCTTCEEEESCCTTCSEEEEEHHHHHHTTCEEEECC-SCCHHHHH
T ss_pred             hhHHHHHHHHHh-CCCceEEEECCCchHHHHHHHHHhcCCEEEEEecCCCcccccCHHHHHhCCCEEEecC-CCCHHHHH
Confidence                11 12223 6789999999999888999999999999999986543322233444556777777654 34667888


Q ss_pred             HHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          237 FLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       237 ~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ++++++++|+++++++++|+|+++++||+.+.+++..||++|.+
T Consensus       370 ~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~GKvvv~~  413 (447)
T 4a0s_A          370 ATNRLFESGAVVPAMSAVYPLAEAAEACRVVQTSRQVGKVAVLC  413 (447)
T ss_dssp             HHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEES
T ss_pred             HHHHHHHcCCcccceeEEEcHHHHHHHHHHHhcCCCceEEEEEe
Confidence            99999999999999999999999999999999999999998864

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=3.6e-45  Score=310.03  Aligned_cols=273  Identities=25%  Similarity=0.321  Sum_probs=210.3

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN----   76 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~----   76 (280)
                      ++|+|.|+|+++||+|||.+++||++|+..+.|..+. ....+|.++|||++|+|+++|++ ++|++||||++...    
T Consensus        18 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~~p~i~G~E~~G~V~~vG~~-~~~~~GdrV~~~~~~~Cg   95 (344)
T 2h6e_A           18 IEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAK-QGFRLPIILGHENAGTIVEVGEL-AKVKKGDNVVVYATWGDL   95 (344)
T ss_dssp             --EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCC-TTCCSSEECCCCEEEEEEEECTT-CCCCTTCEEEECSCBCCS
T ss_pred             EEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcc-cCCCCCccccccceEEEEEECCC-CCCCCCCEEEECCCCCCC
Confidence            4678889999999999999999999999999886531 12357899999999999999999 99999999976521    


Q ss_pred             --------------------CCCCCcceeEEeec-ccccccCCCCCChhhhcccchhHHHHHHHHHhhh-------h---
Q 048785           77 --------------------HFSGGGLAEFAMVK-ESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA-------G---  125 (280)
Q Consensus        77 --------------------~~~~g~~~~~~~v~-~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~-------~---  125 (280)
                                          ....|+|+||+++| ++.++++ +++++++||+++++++|||+++....       +   
T Consensus        96 ~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~~g~~V  174 (344)
T 2h6e_A           96 TCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVV  174 (344)
T ss_dssp             CSTTGGGTCGGGCTTCBCBTTTBCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTCSSCEE
T ss_pred             CChhhhCCCcccCCCccccccccCCcceeeEEecCcccEEEe-CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCCCCCEE
Confidence                                12479999999999 9999999 99999999999999999999996551       1   


Q ss_pred             --------------hhhhC--CCEEEEEec-CCcHHHHHhcCCCeeecCCC-CCcccccCCCCCcccEEEECCCCC-Ccc
Q 048785          126 --------------LAKLG--NSHVTATCG-ARNIEFVKSLGADEVLDYKT-PDGAALKSPSGRKYDAVIHCARGI-PWS  186 (280)
Q Consensus       126 --------------la~~~--G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~-~~~~~~~~~~~~~~d~v~d~~g~~-~~~  186 (280)
                                    +|+.+  |++|+++++ +++.++++++|+++++++++ .+. ....+.++++|++|||+|++ .++
T Consensus       175 lV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~-~~~~~~g~g~D~vid~~g~~~~~~  253 (344)
T 2h6e_A          175 IVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESL-INKLTDGLGASIAIDLVGTEETTY  253 (344)
T ss_dssp             EEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHH-HHHHHTTCCEEEEEESSCCHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHH-HHHhhcCCCccEEEECCCChHHHH
Confidence                          88888  999999995 47899999999999998754 321 11122355899999999997 688


Q ss_pred             cccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHH
Q 048785          187 TFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAK  266 (280)
Q Consensus       187 ~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~  266 (280)
                      .++++++++|+++.+|..... ..++...+..++.++.+.. ....++++++++++++|++++.+ ++|+|+++++||+.
T Consensus       254 ~~~~~l~~~G~iv~~g~~~~~-~~~~~~~~~~~~~~i~g~~-~~~~~~~~~~~~l~~~g~i~~~i-~~~~l~~~~~A~~~  330 (344)
T 2h6e_A          254 NLGKLLAQEGAIILVGMEGKR-VSLEAFDTAVWNKKLLGSN-YGSLNDLEDVVRLSESGKIKPYI-IKVPLDDINKAFTN  330 (344)
T ss_dssp             HHHHHEEEEEEEEECCCCSSC-CCCCHHHHHHTTCEEEECC-SCCHHHHHHHHHHHHTTSSCCCE-EEECC---------
T ss_pred             HHHHHhhcCCEEEEeCCCCCC-cccCHHHHhhCCcEEEEEe-cCCHHHHHHHHHHHHcCCCCcce-EEEeHHHHHHHHHH
Confidence            999999999999999854422 2233344556777777754 34678899999999999999988 99999999999999


Q ss_pred             HhcCCCcCcEEEeC
Q 048785          267 GADGHATGKIILEP  280 (280)
Q Consensus       267 ~~~~~~~gkvvi~~  280 (280)
                      +.+++..||+|+++
T Consensus       331 ~~~~~~~gKvvl~~  344 (344)
T 2h6e_A          331 LDEGRVDGRQVITP  344 (344)
T ss_dssp             -------CEEEECC
T ss_pred             HHcCCCceEEEEeC
Confidence            99888889999975

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=7e-45  Score=310.50  Aligned_cols=273  Identities=18%  Similarity=0.166  Sum_probs=221.7

Q ss_pred             CCCCCCC--------CCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEE
Q 048785            1 HVHVPVP--------TPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVV   72 (280)
Q Consensus         1 ~~~~~~~--------~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~   72 (280)
                      ++++|.|        +|+++||+|||.+++||++|+.++.+.........+|.++|||++|+|+++|++|++|++||||+
T Consensus        22 ~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~  101 (363)
T 3m6i_A           22 ISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVA  101 (363)
T ss_dssp             EEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCTTCEEE
T ss_pred             EEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceEEEEEEECCCCCCCCCCCEEE
Confidence            3578999        99999999999999999999998875432222346789999999999999999999999999998


Q ss_pred             Eeec-------------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh--
Q 048785           73 AILN-------------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG--  125 (280)
Q Consensus        73 ~~~~-------------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~--  125 (280)
                      +...                         ....|+|+||+++|++.++++|+ +++++||++. ++.|||+++ +.++  
T Consensus       102 ~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~  178 (363)
T 3m6i_A          102 IEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVR  178 (363)
T ss_dssp             ECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCC
T ss_pred             EecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCC
Confidence            7411                         12579999999999999999999 9999999884 667999999 4443  


Q ss_pred             -------------------hhhhCCCE-EEEEec-CCcHHHHHhcCCCeeecCCC--C---C--cccccCCCCCcccEEE
Q 048785          126 -------------------LAKLGNSH-VTATCG-ARNIEFVKSLGADEVLDYKT--P---D--GAALKSPSGRKYDAVI  177 (280)
Q Consensus       126 -------------------la~~~G~~-Vi~~~~-~~~~~~~~~~g~~~v~~~~~--~---~--~~~~~~~~~~~~d~v~  177 (280)
                                         +|+.+|++ |+++++ +++.++++++ ++.++++..  .   +  ....+.+.++++|++|
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvi  257 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVAL  257 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhcccccccccchHHHHHHHHHHhCCCCCCEEE
Confidence                               89999996 898885 5889999999 766665531  1   1  2233456678999999


Q ss_pred             ECCCCC-CcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCe--eEeccce
Q 048785          178 HCARGI-PWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKI--KTLIDSK  254 (280)
Q Consensus       178 d~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~--~~~~~~~  254 (280)
                      ||+|++ .++.++++++++|+++.+|..... ..++...+.++++++.+...  ..++++++++++++|++  +++++++
T Consensus       258 d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~-~~~~~~~~~~~~~~i~g~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~  334 (363)
T 3m6i_A          258 ECTGVESSIAAAIWAVKFGGKVFVIGVGKNE-IQIPFMRASVREVDLQFQYR--YCNTWPRAIRLVENGLVDLTRLVTHR  334 (363)
T ss_dssp             ECSCCHHHHHHHHHHSCTTCEEEECCCCCSC-CCCCHHHHHHHTCEEEECCS--CSSCHHHHHHHHHTTSSCCGGGEEEE
T ss_pred             ECCCChHHHHHHHHHhcCCCEEEEEccCCCC-ccccHHHHHhcCcEEEEccC--CHHHHHHHHHHHHhCCCChHHceeee
Confidence            999997 589999999999999999854432 22334456677777777653  26789999999999998  5678899


Q ss_pred             ecchhHHHHHHHHhcC-CCcCcEEEeC
Q 048785          255 HLLSKAEDAWAKGADG-HATGKIILEP  280 (280)
Q Consensus       255 ~~~~~~~~a~~~~~~~-~~~gkvvi~~  280 (280)
                      |+|+++++||+.+.++ ...+|+++++
T Consensus       335 ~~l~~~~~A~~~~~~~~~~~~Kvvi~~  361 (363)
T 3m6i_A          335 FPLEDALKAFETASDPKTGAIKVQIQS  361 (363)
T ss_dssp             EEGGGHHHHHHHHHCGGGCCSEEEEEC
T ss_pred             eeHHHHHHHHHHHhccCCCeEEEEEec
Confidence            9999999999999988 5778999874

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.6e-45  Score=312.08  Aligned_cols=272  Identities=17%  Similarity=0.192  Sum_probs=225.0

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCC------CCCCCCEEEEee
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK------NFKAGYNVVAIL   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~------~~~~Gd~V~~~~   75 (280)
                      +|+|.|+|+++||+|||.+++||++|+.++.|..+   ...+|.++|||++|+|+++| +|+      +|++||+|++..
T Consensus        33 ~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~---~~~~P~v~GhE~~G~V~~vG-~V~~~~~~~~~~vGdrV~~~~  108 (380)
T 1vj0_A           33 KEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDP---RVPLPIILGHEGAGRVVEVN-GEKRDLNGELLKPGDLIVWNR  108 (380)
T ss_dssp             EEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCT---TCCSSBCCCCEEEEEEEEES-SCCBCTTSCBCCTTCEEEECS
T ss_pred             EEccCCCCCCCEEEEEEeEEeecccchHHhcCCCC---CCCCCcccCcCcEEEEEEeC-CccccccCCCCCCCCEEEEcc
Confidence            57788999999999999999999999999988653   13578999999999999999 999      999999999741


Q ss_pred             -------------------------cC--------CCCCcceeEEee-cccccccCCCCCChh-hhcccchhHHHHHHHH
Q 048785           76 -------------------------NH--------FSGGGLAEFAMV-KESLTASRPLEVSAA-EGAGLPLAGLTALEAL  120 (280)
Q Consensus        76 -------------------------~~--------~~~g~~~~~~~v-~~~~~~~~p~~~~~~-~aa~~~~~~~~a~~~l  120 (280)
                                               +.        ...|+|+||+++ |++.++++|++++++ +|++++ +++|||+++
T Consensus       109 ~~~cg~C~~C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~aey~~v~~~~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al  187 (380)
T 1vj0_A          109 GITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMC-SGATAYHAF  187 (380)
T ss_dssp             EECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTSCHHHHHHHTT-HHHHHHHHH
T ss_pred             cCCCCCCHHHhcCCCcccCCCcceeccccccCCCCCCCccccceEEEcccceEEECCCCCChHHhHhhhc-HHHHHHHHH
Confidence                                     11        237999999999 999999999999999 666666 888999999


Q ss_pred             Hhhh--h-------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCC---CCC--cccccCCCCCc
Q 048785          121 TQSA--G-------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYK---TPD--GAALKSPSGRK  172 (280)
Q Consensus       121 ~~~~--~-------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~---~~~--~~~~~~~~~~~  172 (280)
                      ....  +                   +|+.+|+ +|+++++ +++.++++++|++++++++   +.+  ....+.+.+++
T Consensus       188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g  267 (380)
T 1vj0_A          188 DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRG  267 (380)
T ss_dssp             HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSC
T ss_pred             HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCC
Confidence            5433  1                   8899995 9999995 4889999999999999986   333  12334455668


Q ss_pred             ccEEEECCCCC-CcccccccccCCcEEEEeCCCc-hhhHHHHHhh-hhccceeeEEEEEcCCHHHHHHHHHHHHC--CCe
Q 048785          173 YDAVIHCARGI-PWSTFEPNLAENGKVIDLTPTP-SAMLTFAWQK-LTFSKKQLVPLLVIPKGENLVFLVKLLKE--GKI  247 (280)
Q Consensus       173 ~d~v~d~~g~~-~~~~~~~~l~~~g~~v~~g~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--g~~  247 (280)
                      +|++|||+|++ .+..++++++++|+++.+|... .....++... +..+++++.+... ...++++++++++++  |++
T Consensus       268 ~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~l~~~~~g~l  346 (380)
T 1vj0_A          268 ADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWV-SDTSHFVKTVSITSRNYQLL  346 (380)
T ss_dssp             EEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCC-CCHHHHHHHHHHHHTCHHHH
T ss_pred             CcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCCeeEchHHHHHhCCeEEEEeec-CCHHHHHHHHHHHHhhcCCe
Confidence            99999999985 5889999999999999998654 3122233444 6678888887653 467889999999999  999


Q ss_pred             eEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          248 KTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       248 ~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      +++++++|+|+++++||+.+.+++.. |+|+++
T Consensus       347 ~~~i~~~~~l~~~~~A~~~~~~~~~~-Kvvl~~  378 (380)
T 1vj0_A          347 SKLITHRLPLKEANKALELMESREAL-KVILYP  378 (380)
T ss_dssp             GGGCCEEEEGGGHHHHHHHHHHTSCS-CEEEEC
T ss_pred             eeEEEEEEeHHHHHHHHHHHhcCCCc-eEEEEe
Confidence            98999999999999999999988877 999875

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=2.1e-44  Score=308.02  Aligned_cols=269  Identities=21%  Similarity=0.288  Sum_probs=211.8

Q ss_pred             CCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC-----
Q 048785            3 HVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH-----   77 (280)
Q Consensus         3 ~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-----   77 (280)
                      ++|.|+|+++||+|||.+++||++|+.++.|..      .+|.++|||++|+|+++|++|++|++||||++.+..     
T Consensus        28 ~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~------~~p~v~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~~~~~  101 (371)
T 3gqv_A           28 AAPCPMLPRDQVYVRVEAVAINPSDTSMRGQFA------TPWAFLGTDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRT  101 (371)
T ss_dssp             EECCCCCCTTSEEEEEEEEECCGGGGC-----C------CTTSCCCSEEEEEEEEECTTCCSCCTTCEEEEECCTTCTTC
T ss_pred             cCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcCC------CCCccCccccEEEEEEeCCCCCCCCCCCEEEEeccCCCCCC
Confidence            789999999999999999999999999887632      468999999999999999999999999999987522     


Q ss_pred             CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhh-h-------------h------------------
Q 048785           78 FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS-A-------------G------------------  125 (280)
Q Consensus        78 ~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~-~-------------~------------------  125 (280)
                      ...|+|+||+++|.+.++++|+++++++||++++++.|||+++.+. .             +                  
T Consensus       102 ~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a  181 (371)
T 3gqv_A          102 PDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVT  181 (371)
T ss_dssp             TTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHH
T ss_pred             CCCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHH
Confidence            3479999999999999999999999999999999999999999554 1             3                  


Q ss_pred             --hhhhCCCEEEEEecCCcHHHHHhcCCCeeecCCCCC-cc-cccCCCCCcccEEEECCCCC-Ccccccccc-cCCcEEE
Q 048785          126 --LAKLGNSHVTATCGARNIEFVKSLGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCARGI-PWSTFEPNL-AENGKVI  199 (280)
Q Consensus       126 --la~~~G~~Vi~~~~~~~~~~~~~~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l-~~~g~~v  199 (280)
                        +|+..|++||++++++++++++++|+++++|+++.+ .+ ..+.+.+ ++|++|||+|++ .+..+++++ +++|+++
T Consensus       182 ~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g-~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv  260 (371)
T 3gqv_A          182 MQMLRLSGYIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKN-NLRYALDCITNVESTTFCFAAIGRAGGHYV  260 (371)
T ss_dssp             HHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTT-CCCEEEESSCSHHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHCCCEEEEEeCHHHHHHHHHcCCcEEEECCCchHHHHHHHHccC-CccEEEECCCchHHHHHHHHHhhcCCCEEE
Confidence              899999999999888899999999999999998776 22 3333444 499999999985 588899999 5999999


Q ss_pred             EeCCCchh-----hHH---HHHhhhhccceeeEEEEEc-CC-------HHHHHHHHHHHHCCCeeEe--ccceecchhHH
Q 048785          200 DLTPTPSA-----MLT---FAWQKLTFSKKQLVPLLVI-PK-------GENLVFLVKLLKEGKIKTL--IDSKHLLSKAE  261 (280)
Q Consensus       200 ~~g~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~i~~g~~~~~--~~~~~~~~~~~  261 (280)
                      .+|.....     ...   .....+..+++++.+.... ..       .+.++++++++++|++++.  +++.|++++++
T Consensus       261 ~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~  340 (371)
T 3gqv_A          261 SLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIK  340 (371)
T ss_dssp             ESSCCCC---CCSCEEEEECCGGGGGTSCBSCSTTTCBCCCHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEECHHHHH
T ss_pred             EEecCccccccccccceeeeeeeeeccccccccccccccccHHHHHHHHHHHHHHHHHHHCCeeeCCcCeecCCcHHHHH
Confidence            99843321     000   0112234455555543211 11       1234588899999999764  44569999999


Q ss_pred             HHHHHHhcCCCcCcEEE
Q 048785          262 DAWAKGADGHATGKIIL  278 (280)
Q Consensus       262 ~a~~~~~~~~~~gkvvi  278 (280)
                      +||+.+.+++..||.++
T Consensus       341 ~A~~~l~~g~~~Gkkvv  357 (371)
T 3gqv_A          341 QGMELVRKGELSGEKLV  357 (371)
T ss_dssp             HHHHHHHTTCCSSCEEE
T ss_pred             HHHHHHHcCCCceEEEE
Confidence            99999999988775444

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=1.1e-43  Score=302.97  Aligned_cols=270  Identities=20%  Similarity=0.216  Sum_probs=222.8

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee------
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL------   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~------   75 (280)
                      +++|.|+|+++||+|||.++|||++|+.++.|..+.   ..+|.++|||++|+|+++|++|++|++||+|++..      
T Consensus        32 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~~P~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~Cg  108 (366)
T 1yqd_A           32 FNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGF---SMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACH  108 (366)
T ss_dssp             EEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSC---CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECCS
T ss_pred             EEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCC---CCCCEecccceEEEEEEECCCCCcCCCCCEEEEcCCcCCCC
Confidence            467889999999999999999999999999886542   35789999999999999999999999999998521      


Q ss_pred             --------------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhh----hh
Q 048785           76 --------------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS----AG  125 (280)
Q Consensus        76 --------------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~----~~  125 (280)
                                                +....|+|+||+.+|++.++++|+++++++||++++++.|||+++.+.    .+
T Consensus       109 ~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g  188 (366)
T 1yqd_A          109 SCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLDEPG  188 (366)
T ss_dssp             SSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEECCTTSCTTTTGGGGTHHHHHHHHHHHTTCCCTT
T ss_pred             CChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEECCCCCCHHHhhhhhhhHHHHHHHHHhcCcCCCC
Confidence                                      112569999999999999999999999999999999999999998642    11


Q ss_pred             -----------------hhhhCCCEEEEEec-CCcHHHHH-hcCCCeeecCCCCCcccccCCCCCcccEEEECCCCC-Cc
Q 048785          126 -----------------LAKLGNSHVTATCG-ARNIEFVK-SLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGI-PW  185 (280)
Q Consensus       126 -----------------la~~~G~~Vi~~~~-~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~  185 (280)
                                       +|+.+|++|+++++ +++++.++ ++|+++++++++.. ...+.+  +++|++|||+|+. .+
T Consensus       189 ~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~-~~~~~~--~~~D~vid~~g~~~~~  265 (366)
T 1yqd_A          189 KHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQE-QMQAAA--GTLDGIIDTVSAVHPL  265 (366)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHH-HHHHTT--TCEEEEEECCSSCCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHH-HHHHhh--CCCCEEEECCCcHHHH
Confidence                             88899999999995 57888876 89999999887532 122222  3799999999986 58


Q ss_pred             ccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHH
Q 048785          186 STFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWA  265 (280)
Q Consensus       186 ~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~  265 (280)
                      +.++++++++|+++.+|..... ..++...+..++.++.+.. ....++++++++++++|++++.+ ++|+|+++++||+
T Consensus       266 ~~~~~~l~~~G~iv~~g~~~~~-~~~~~~~~~~~~~~i~g~~-~~~~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~  342 (366)
T 1yqd_A          266 LPLFGLLKSHGKLILVGAPEKP-LELPAFSLIAGRKIVAGSG-IGGMKETQEMIDFAAKHNITADI-EVISTDYLNTAME  342 (366)
T ss_dssp             HHHHHHEEEEEEEEECCCCSSC-EEECHHHHHTTTCEEEECC-SCCHHHHHHHHHHHHHTTCCCCE-EEECGGGHHHHHH
T ss_pred             HHHHHHHhcCCEEEEEccCCCC-CCcCHHHHHhCCcEEEEec-CCCHHHHHHHHHHHHcCCCCCce-EEEcHHHHHHHHH
Confidence            8999999999999999865432 1223344566777777754 34577899999999999998876 6999999999999


Q ss_pred             HHhcCCCcCcEEEeC
Q 048785          266 KGADGHATGKIILEP  280 (280)
Q Consensus       266 ~~~~~~~~gkvvi~~  280 (280)
                      .+.+++..||+|+++
T Consensus       343 ~~~~~~~~gKvvl~~  357 (366)
T 1yqd_A          343 RLAKNDVRYRFVIDV  357 (366)
T ss_dssp             HHHTTCCSSEEEECH
T ss_pred             HHHcCCcceEEEEEc
Confidence            999998889999863

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=9.7e-44  Score=302.97  Aligned_cols=270  Identities=26%  Similarity=0.348  Sum_probs=221.1

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCC-CCCCCCEEEEeecCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK-NFKAGYNVVAILNHFSG   80 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~-~~~~Gd~V~~~~~~~~~   80 (280)
                      +++|.|+|+++||+|||.++|||++|+.++.|..+.  ...+|.++|||++|+|+++|++|+ +|++||+|++.    ..
T Consensus        44 ~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~~~P~i~G~E~~G~V~~vG~~V~~~~~vGdrV~~~----~~  117 (362)
T 2c0c_A           44 RDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDP--SVKPPFDIGFEGIGEVVALGLSASARYTVGQAVAYM----AP  117 (362)
T ss_dssp             EEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCT--TCCSCEECCSEEEEEEEEECTTGGGTCCTTCEEEEE----CS
T ss_pred             eecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCC--CCCCCCCCCceeEEEEEEECCCccCCCCCCCEEEEc----cC
Confidence            578899999999999999999999999999886532  236789999999999999999999 99999999987    47


Q ss_pred             CcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEe
Q 048785           81 GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATC  138 (280)
Q Consensus        81 g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~  138 (280)
                      |+|+||+++|++.++++|+. + .++|+++.+++|||+++.+.++                      +|+..|++|++++
T Consensus       118 G~~aey~~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~  195 (362)
T 2c0c_A          118 GSFAEYTVVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTC  195 (362)
T ss_dssp             CCSBSEEEEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEE
T ss_pred             CcceeEEEEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEE
Confidence            99999999999999999986 4 4677888899999999976533                      8888999999999


Q ss_pred             cC-CcHHHHHhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhh--------
Q 048785          139 GA-RNIEFVKSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAM--------  208 (280)
Q Consensus       139 ~~-~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~--------  208 (280)
                      ++ ++.++++++|++.++++++.+ .+.+....++++|++|||+|+..++.++++++++|+++.+|......        
T Consensus       196 ~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~  275 (362)
T 2c0c_A          196 SSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTPTGLSPV  275 (362)
T ss_dssp             SSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCTHHHHHHHHHEEEEEEEEECCCGGGTTSSSCCCCC
T ss_pred             CCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCCcCcccccccc
Confidence            75 788999999999999987655 22222223568999999999988889999999999999998543211        


Q ss_pred             --HHHHHhhhhccceeeEEEEEcC----CHHHHHHHHHHHHCCCeeEecc--------ceecchhHHHHHHHHhcCCCcC
Q 048785          209 --LTFAWQKLTFSKKQLVPLLVIP----KGENLVFLVKLLKEGKIKTLID--------SKHLLSKAEDAWAKGADGHATG  274 (280)
Q Consensus       209 --~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~g~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~g  274 (280)
                        ..+. ..+..++.++.++....    ..+.++++++++++|++++.+.        +.|+++++++||+.+.++...|
T Consensus       276 ~~~~~~-~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~~~A~~~~~~~~~~g  354 (362)
T 2c0c_A          276 KAGTLP-AKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGKNTG  354 (362)
T ss_dssp             CCTTHH-HHHHHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCCCEECSTTSTTCSCBSTTHHHHHHHHHHTTCCSB
T ss_pred             cccccH-HHHHhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEeeeccccccccccccCHHHHHHHHHHHHcCCCCc
Confidence              0121 34455677777654311    2567899999999999987543        5689999999999999888889


Q ss_pred             cEEEeC
Q 048785          275 KIILEP  280 (280)
Q Consensus       275 kvvi~~  280 (280)
                      |+|+++
T Consensus       355 Kvvv~~  360 (362)
T 2c0c_A          355 KIVVEL  360 (362)
T ss_dssp             EEEEEC
T ss_pred             eEEEEc
Confidence            999874

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=7.7e-45  Score=310.45  Aligned_cols=275  Identities=20%  Similarity=0.231  Sum_probs=220.3

Q ss_pred             CCCCCCCCC--CCeEEEEEeeeecChhhHHhHhccCCCCCCCCCC---------ccccccceEEEEEeCCCCCCCCCCCE
Q 048785            2 VHVPVPTPR--KDEVLLKVEASSLNAFDWKIKKGVARPILPRKFP---------YIPATDVAGEIIEVGSEVKNFKAGYN   70 (280)
Q Consensus         2 ~~~~~~~~~--~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p---------~~~G~e~~G~V~~vG~~v~~~~~Gd~   70 (280)
                      +|+|.|.|+  ++||+|||.++|||++|+.++.|..+.  ...+|         .++|||++|+|+++|++|++|++||+
T Consensus        22 ~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~P~~~~~~~p~~i~G~E~~G~V~~vG~~v~~~~vGdr   99 (364)
T 1gu7_A           22 QSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPS--KPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDW   99 (364)
T ss_dssp             EEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSC--CCCCBSTTCCSSCBEECCSCCEEEEEEECTTCCSCCTTCE
T ss_pred             eeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCC--CCCCCccccccCcccccCceeEEEEEEeCCCCCcCCCCCE
Confidence            466777776  999999999999999999999986542  12355         89999999999999999999999999


Q ss_pred             EEEeecCCCCCcceeEEeecccccccCCC-----------CCChhhhcccchhHHHHHHHHHhhh------h--------
Q 048785           71 VVAILNHFSGGGLAEFAMVKESLTASRPL-----------EVSAAEGAGLPLAGLTALEALTQSA------G--------  125 (280)
Q Consensus        71 V~~~~~~~~~g~~~~~~~v~~~~~~~~p~-----------~~~~~~aa~~~~~~~~a~~~l~~~~------~--------  125 (280)
                      |++...  ..|+|+||+++|++.++++|+           ++++++||+++++++|||+++.+.+      +        
T Consensus       100 V~~~~~--~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~  177 (364)
T 1gu7_A          100 VIPSHV--NFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGT  177 (364)
T ss_dssp             EEESSS--CCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTT
T ss_pred             EEecCC--CCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCC
Confidence            997632  469999999999999999998           8999999999999999999996532      2        


Q ss_pred             ---------hhhhCCCEEEEEecC-Cc----HHHHHhcCCCeeecCCC---CC-c-ccccCC--CCCcccEEEECCCCCC
Q 048785          126 ---------LAKLGNSHVTATCGA-RN----IEFVKSLGADEVLDYKT---PD-G-AALKSP--SGRKYDAVIHCARGIP  184 (280)
Q Consensus       126 ---------la~~~G~~Vi~~~~~-~~----~~~~~~~g~~~v~~~~~---~~-~-~~~~~~--~~~~~d~v~d~~g~~~  184 (280)
                               +|+.+|++||+++++ ++    .++++++|+++++++++   .+ . ...+.+  .++++|++|||+|++.
T Consensus       178 G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g~Dvvid~~G~~~  257 (364)
T 1gu7_A          178 SAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKS  257 (364)
T ss_dssp             SHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHH
T ss_pred             cHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCCceEEEECCCchh
Confidence                     888999999999854 54    57788999999998764   22 1 222333  4668999999999887


Q ss_pred             cccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcC--------CHHHHHHHHHHHHCCCeeEeccceec
Q 048785          185 WSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIP--------KGENLVFLVKLLKEGKIKTLIDSKHL  256 (280)
Q Consensus       185 ~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~g~~~~~~~~~~~  256 (280)
                      ...++++++++|+++.+|........++...+..++.++.++....        ..+.++++++++++|++++.+..+++
T Consensus       258 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~  337 (364)
T 1gu7_A          258 STGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETL  337 (364)
T ss_dssp             HHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTCCCCCCCEEEE
T ss_pred             HHHHHHHhccCCEEEEecCCCCCCcccCHHHHhhcCcEEEEEchhHhcccCHHHHHHHHHHHHHHHHcCCcccccceEEe
Confidence            6688999999999999986442222222334455777777654311        13678999999999999887667777


Q ss_pred             ch---hHHHHHHHHhcCCCcCcEEEeC
Q 048785          257 LS---KAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       257 ~~---~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ++   ++++||+.+.++...||+|+++
T Consensus       338 ~~~l~~~~~A~~~~~~~~~~gKvvv~~  364 (364)
T 1gu7_A          338 YDGTKPLHELYQDGVANSKDGKQLITY  364 (364)
T ss_dssp             CCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             cCchhhHHHHHHHHHhCCCCceEEEeC
Confidence            75   9999999999888889999975

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=9.9e-45  Score=305.80  Aligned_cols=275  Identities=21%  Similarity=0.247  Sum_probs=220.2

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee---cCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL---NHF   78 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~---~~~   78 (280)
                      +++|.|+|+++||+||+.++|||++|+..+.|..+.  ...+|.++|||++|+|+++  ++++|++||||++..   +..
T Consensus        22 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~i~G~E~~G~V~~~--~v~~~~vGdrV~~~~~~~g~~   97 (330)
T 1tt7_A           22 KTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNI--VREYPLILGIDAAGTVVSS--NDPRFAEGDEVIATSYELGVS   97 (330)
T ss_dssp             EEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTT--CSSCSEECCSEEEEEEEEC--SSTTCCTTCEEEEESTTBTTT
T ss_pred             eecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCC--cCCCCccccceEEEEEEEc--CCCCCCCCCEEEEcccccCCC
Confidence            577889999999999999999999999998886431  2357899999999999996  468899999999762   223


Q ss_pred             CCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhh--h-------h----------------hhhhCCCE
Q 048785           79 SGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS--A-------G----------------LAKLGNSH  133 (280)
Q Consensus        79 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~--~-------~----------------la~~~G~~  133 (280)
                      ..|+|+||+.+|++.++++|+++++++||+++++++|||.++...  +       .                +|+..|++
T Consensus        98 ~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~  177 (330)
T 1tt7_A           98 RDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYD  177 (330)
T ss_dssp             BCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCC
T ss_pred             CCccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCE
Confidence            579999999999999999999999999999999999999887421  1       1                88889999


Q ss_pred             EEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHH
Q 048785          134 VTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFA  212 (280)
Q Consensus       134 Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~  212 (280)
                      |+++++ ++++++++++|+++++++++..........++++|++|||+|++.+..++++++++|+++.+|........++
T Consensus       178 vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~  257 (330)
T 1tt7_A          178 VVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPAT  257 (330)
T ss_dssp             EEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCTHHHHHHHTTEEEEEEEEECCCSSCSCEEEC
T ss_pred             EEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCcHHHHHHHHHhhcCCCEEEEEecCCCCccCcc
Confidence            999996 5889999999999999875432122233345689999999999889999999999999999985443211122


Q ss_pred             HhhhhccceeeEEEEE-cCC----HHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          213 WQKLTFSKKQLVPLLV-IPK----GENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       213 ~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ...+..++.++.++.. ...    .+.++.+++++++|+++++++++|+++++++||+.+.+++..||+|+++
T Consensus       258 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  330 (330)
T 1tt7_A          258 VYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL  330 (330)
T ss_dssp             SHHHHTSCCEEEECCSSSCCHHHHHHHHHHTTTTSCCSCSTTSEEEEECSTTHHHHHHHTTTTCCSSEEEECC
T ss_pred             hHHHHhcCeEEEEEeccccCHHHHHHHHHHHHHHHhcCCcccccceEEcHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            2334557777776531 112    2456777788888999988889999999999999999988889999975

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=9.8e-44  Score=299.48  Aligned_cols=273  Identities=19%  Similarity=0.234  Sum_probs=214.3

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee---cCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL---NHF   78 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~---~~~   78 (280)
                      +|+|.|+|+++||+||+.++|||++|+..+.|..+.  ...+|.++|||++|+|+++  ++++|++||||++..   +..
T Consensus        21 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~v~G~E~~G~V~~~--~v~~~~vGdrV~~~~~~~g~~   96 (328)
T 1xa0_A           21 QTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKI--VKTYPFVPGIDLAGVVVSS--QHPRFREGDEVIATGYEIGVT   96 (328)
T ss_dssp             EEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSS--CCSSSBCCCSEEEEEEEEC--CSSSCCTTCEEEEESTTBTTT
T ss_pred             EeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCC--CCCCCcccCcceEEEEEec--CCCCCCCCCEEEEccccCCCC
Confidence            567888999999999999999999999998886431  2357899999999999995  568899999999752   223


Q ss_pred             CCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhh--h-------h----------------hhhhCCCE
Q 048785           79 SGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS--A-------G----------------LAKLGNSH  133 (280)
Q Consensus        79 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~--~-------~----------------la~~~G~~  133 (280)
                      ..|+|+||+.+|++.++++|+++++++||+++++++|||.++...  +       .                +|+.+|++
T Consensus        97 ~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~  176 (328)
T 1xa0_A           97 HFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYT  176 (328)
T ss_dssp             BCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCC
T ss_pred             CCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCE
Confidence            579999999999999999999999999999999999999887421  1       1                88899999


Q ss_pred             EEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHH
Q 048785          134 VTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFA  212 (280)
Q Consensus       134 Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~  212 (280)
                      |+++++ ++++++++++|+++++++++..........++++|++|||+|++.+..++++++++|+++.+|........+.
T Consensus       177 vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~  256 (328)
T 1xa0_A          177 VEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGGAEVPTT  256 (328)
T ss_dssp             EEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTTTHHHHHHTEEEEEEEEECSCCSSSCCCCC
T ss_pred             EEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcHHHHHHHHHhhccCCEEEEEeecCCCCCCCc
Confidence            999996 5899999999999999887543222233345589999999999889999999999999999985443222222


Q ss_pred             HhhhhccceeeEEEEE-cCC----HHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          213 WQKLTFSKKQLVPLLV-IPK----GENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       213 ~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ...+..++.++.++.. ...    .+.++.+.+++++| +++ ++++|+++++++||+.+.+++..||+|+++
T Consensus       257 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g-l~~-~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  327 (328)
T 1xa0_A          257 VHPFILRGVSLLGIDSVYCPMDLRLRIWERLAGDLKPD-LER-IAQEISLAELPQALKRILRGELRGRTVVRL  327 (328)
T ss_dssp             SHHHHHTTCEEEECCSSSCCHHHHHHHHHHHHTTTCCC-HHH-HEEEEEGGGHHHHHHHHHHTCCCSEEEEEC
T ss_pred             hhhhhhcCceEEEEecccCCHHHHHHHHHHHHHHHHcC-Cce-eeeEeCHHHHHHHHHHHHcCCCCCeEEEEe
Confidence            2334456777766521 112    24567777777888 776 468999999999999999888889999975

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=5.1e-44  Score=308.93  Aligned_cols=272  Identities=19%  Similarity=0.239  Sum_probs=222.6

Q ss_pred             CCCCCCC-CCCCeEEEEEeeeecChhhHHhHhccCCCC----CCCCCCccccccceEEEEEeCCCC------CCCCCCCE
Q 048785            2 VHVPVPT-PRKDEVLLKVEASSLNAFDWKIKKGVARPI----LPRKFPYIPATDVAGEIIEVGSEV------KNFKAGYN   70 (280)
Q Consensus         2 ~~~~~~~-~~~~evlV~v~~~~i~~~d~~~~~g~~~~~----~~~~~p~~~G~e~~G~V~~vG~~v------~~~~~Gd~   70 (280)
                      +++|.|+ |+++||+|||.+++||++|+.++.|.....    ....+|.++|||++|+|+++|++|      ++|++||+
T Consensus        45 ~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~vG~~v~~~~~~~~~~vGdr  124 (404)
T 3ip1_A           45 EEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEP  124 (404)
T ss_dssp             EEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEEECTTCEETTTTEECCTTCE
T ss_pred             EEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEEECCCccccccCCCCCCCCE
Confidence            5789999 999999999999999999999988753211    113678999999999999999999      89999999


Q ss_pred             EEEe------------------------ecCCCCCcceeEEeecccccccCCCCCC------hhhhcccchhHHHHHHHH
Q 048785           71 VVAI------------------------LNHFSGGGLAEFAMVKESLTASRPLEVS------AAEGAGLPLAGLTALEAL  120 (280)
Q Consensus        71 V~~~------------------------~~~~~~g~~~~~~~v~~~~~~~~p~~~~------~~~aa~~~~~~~~a~~~l  120 (280)
                      |++.                        .+....|+|+||+.+|++.++++|++++      +.++|+++.+++|||+++
T Consensus       125 V~~~~~~~Cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al  204 (404)
T 3ip1_A          125 VCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAV  204 (404)
T ss_dssp             EEECSEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHH
T ss_pred             EEECCccCCCCCHHHHCcCcccCccccccCCCCCCCCcceEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHH
Confidence            9974                        1234579999999999999999999875      456888999999999999


Q ss_pred             Hhhh-h---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCC--cccccCCCCCccc
Q 048785          121 TQSA-G---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYD  174 (280)
Q Consensus       121 ~~~~-~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d  174 (280)
                      .... +                     +|+.+|+ +|+++++ +++.++++++|+++++++++.+  ....+.+.++++|
T Consensus       205 ~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D  284 (404)
T 3ip1_A          205 IVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAK  284 (404)
T ss_dssp             TTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCS
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCC
Confidence            5432 2                     8999999 9999985 4889999999999999987766  2344556778999


Q ss_pred             EEEECCCCC--Ccccccccc----cCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCee
Q 048785          175 AVIHCARGI--PWSTFEPNL----AENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIK  248 (280)
Q Consensus       175 ~v~d~~g~~--~~~~~~~~l----~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~  248 (280)
                      ++|||+|++  .+..+.+++    +++|+++.+|..... ..++...+..++.++.+.......++++++++++++| ++
T Consensus       285 ~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~~-~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ll~~g-l~  362 (404)
T 3ip1_A          285 LFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAK-IPLTGEVFQVRRAQIVGSQGHSGHGTFPRVISLMASG-MD  362 (404)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCSC-EEECHHHHHHTTCEEEECCCCCSTTHHHHHHHHHHTT-CC
T ss_pred             EEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCCC-CcccHHHHhccceEEEEecCCCchHHHHHHHHHHHcC-CC
Confidence            999999998  566666677    999999999865432 2334555667888888765433467899999999999 64


Q ss_pred             --EeccceecchhHHHHHHHHhcCCCcCcEEEe
Q 048785          249 --TLIDSKHLLSKAEDAWAKGADGHATGKIILE  279 (280)
Q Consensus       249 --~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~  279 (280)
                        ++++++|+|+++++||+.+.    .||+|++
T Consensus       363 ~~~~i~~~~~l~~~~~A~~~~~----~GKvvl~  391 (404)
T 3ip1_A          363 MTKIISKTVSMEEIPEYIKRLQ----TDKSLVK  391 (404)
T ss_dssp             GGGGCCEEECGGGHHHHHHHTT----TCTTCSC
T ss_pred             hhheEEEEeeHHHHHHHHHHHh----CCcEEEe
Confidence              57889999999999999987    5677765

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=7.6e-44  Score=307.39  Aligned_cols=271  Identities=18%  Similarity=0.172  Sum_probs=220.3

Q ss_pred             CCCCCCCC-CC-----CeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee
Q 048785            2 VHVPVPTP-RK-----DEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL   75 (280)
Q Consensus         2 ~~~~~~~~-~~-----~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~   75 (280)
                      +|+|.|+| ++     +||+|||.++|||++|+.++.|..+    ..+|.++|||++|+|+++|++|++|++||+|++..
T Consensus        17 ~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~----~~~p~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~~   92 (398)
T 2dph_A           17 ETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI----VPKGHVLGHEITGEVVEKGSDVELMDIGDLVSVPF   92 (398)
T ss_dssp             EEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC----CCTTCBCCCCEEEEEEEECTTCCSCCTTCEEECCS
T ss_pred             EEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC----CCCCcccCCceEEEEEEECCCCCCCCCCCEEEEcC
Confidence            57788887 67     9999999999999999999988642    36789999999999999999999999999998631


Q ss_pred             --------------------------------c---CCCCCcceeEEeeccc--ccccCCCCCChhh----hcccchhHH
Q 048785           76 --------------------------------N---HFSGGGLAEFAMVKES--LTASRPLEVSAAE----GAGLPLAGL  114 (280)
Q Consensus        76 --------------------------------~---~~~~g~~~~~~~v~~~--~~~~~p~~~~~~~----aa~~~~~~~  114 (280)
                                                      +   ....|+|+||+++|++  .++++|+++++++    ||+++.+++
T Consensus        93 ~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~~~~~aa~l~~~~~  172 (398)
T 2dph_A           93 NVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLISDILP  172 (398)
T ss_dssp             BCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHHHHCEECSSHHHHHHTHHHHTTTTTHHH
T ss_pred             CCCCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEeccccCeEEECCCCCChhhhcchhhhhcCHHH
Confidence                                            0   0246999999999987  8999999999998    888999999


Q ss_pred             HHHHHHHhhhh---------------------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCCCCCc--c-cccCC
Q 048785          115 TALEALTQSAG---------------------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYKTPDG--A-ALKSP  168 (280)
Q Consensus       115 ~a~~~l~~~~~---------------------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~--~-~~~~~  168 (280)
                      |||+++ +.++                     +|+.+|+ +|++++++ +++++++++|++ ++++++.+.  + ..+.+
T Consensus       173 ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~i~~~~~~~~~~~~~~~~  250 (398)
T 2dph_A          173 TGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFE-TIDLRNSAPLRDQIDQIL  250 (398)
T ss_dssp             HHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCE-EEETTSSSCHHHHHHHHH
T ss_pred             HHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-EEcCCCcchHHHHHHHHh
Confidence            999999 4433                     8889999 99999964 788999999995 888866542  2 22334


Q ss_pred             CCCcccEEEECCCCC---------------CcccccccccCCcEEEEeCCCc------------hhhHHHHHhhhhccce
Q 048785          169 SGRKYDAVIHCARGI---------------PWSTFEPNLAENGKVIDLTPTP------------SAMLTFAWQKLTFSKK  221 (280)
Q Consensus       169 ~~~~~d~v~d~~g~~---------------~~~~~~~~l~~~g~~v~~g~~~------------~~~~~~~~~~~~~~~~  221 (280)
                      .++++|++|||+|+.               .+..++++++++|+++.+|...            .....++...+..+++
T Consensus       251 ~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~  330 (398)
T 2dph_A          251 GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSI  330 (398)
T ss_dssp             SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTC
T ss_pred             CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccccccccccccccccCCcccccHHHHhhcCC
Confidence            566899999999986               3778999999999999998551            1111223334555677


Q ss_pred             eeEEEEEcCCHHHHHHHHHHHHCCCee--E--eccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          222 QLVPLLVIPKGENLVFLVKLLKEGKIK--T--LIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~i~~g~~~--~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ++.+.. ....+.++++++++++|+++  +  +++++|+|+++++||+.+.++.. +|+|+++
T Consensus       331 ~i~g~~-~~~~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-gKvvv~~  391 (398)
T 2dph_A          331 RIMTGM-APVTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGSP-AKFVIDP  391 (398)
T ss_dssp             EEECSS-CCGGGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHHHHHHHHTTCS-CEEEECT
T ss_pred             EEEEec-cCcHHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHHHHHHHhcCCc-eEEEEec
Confidence            766533 23567799999999999998  6  67899999999999999998888 9999864

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=1.1e-42  Score=294.08  Aligned_cols=267  Identities=21%  Similarity=0.237  Sum_probs=219.6

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCcccccc----ceEEEEEeCCCCCCCCCCCEEEEeecC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATD----VAGEIIEVGSEVKNFKAGYNVVAILNH   77 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e----~~G~V~~vG~~v~~~~~Gd~V~~~~~~   77 (280)
                      +|+|.|+|+++||+|||.+++||++|+..+.+...    ..+|.++|||    ++|+|++.  ++++|++||||++.   
T Consensus        29 ~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~----~~~p~~~G~e~g~~~~G~V~~~--~v~~~~vGdrV~~~---   99 (336)
T 4b7c_A           29 VETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARS----YIPPVGIGEVMRALGVGKVLVS--KHPGFQAGDYVNGA---   99 (336)
T ss_dssp             EEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCC----SSCCCCTTSBCCCEEEEEEEEE--CSTTCCTTCEEEEE---
T ss_pred             EeccCCCCCCCEEEEEEEEEEeCHHHHhhhhcccc----cCCCCCCCcccCCceEEEEEec--CCCCCCCCCEEecc---
Confidence            57889999999999999999999999988876432    1346667776    79999994  58899999999974   


Q ss_pred             CCCCcceeEEeecccccccCCCCCChhhh--cccchhHHHHHHHHHhhhh----------------------hhhhCCCE
Q 048785           78 FSGGGLAEFAMVKESLTASRPLEVSAAEG--AGLPLAGLTALEALTQSAG----------------------LAKLGNSH  133 (280)
Q Consensus        78 ~~~g~~~~~~~v~~~~~~~~p~~~~~~~a--a~~~~~~~~a~~~l~~~~~----------------------la~~~G~~  133 (280)
                         |+|+||+.+|++.++++|+++++.++  |+++.+++|||+++.+.++                      +++..|++
T Consensus       100 ---G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~  176 (336)
T 4b7c_A          100 ---LGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCR  176 (336)
T ss_dssp             ---CCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCE
T ss_pred             ---CCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCE
Confidence               78999999999999999999987776  7889999999999966544                      88899999


Q ss_pred             EEEEecC-CcHHHH-HhcCCCeeecCCCCC-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchh---
Q 048785          134 VTATCGA-RNIEFV-KSLGADEVLDYKTPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSA---  207 (280)
Q Consensus       134 Vi~~~~~-~~~~~~-~~~g~~~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~---  207 (280)
                      |++++++ ++.+.+ +++|++.++++++.+ .+.+....++++|++|||+|++.+..++++++++|+++.+|.....   
T Consensus       177 Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~  256 (336)
T 4b7c_A          177 VVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAISQYNNK  256 (336)
T ss_dssp             EEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCGGGGC--
T ss_pred             EEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCcchHHHHHHHHhhCCEEEEEeecccccCC
Confidence            9999964 788888 899999999988766 2222222256899999999998899999999999999999855421   


Q ss_pred             ---hHHHHHhhhhccceeeEEEEEcC----CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          208 ---MLTFAWQKLTFSKKQLVPLLVIP----KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       208 ---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                         ...++...+..++.++.++....    ..+.++++++++++|++++.+..+|+++++++||+.+.+++..||+|+++
T Consensus       257 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  336 (336)
T 4b7c_A          257 EAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSREDIVEGLETFPETLLKLFSGENFGKLVLKV  336 (336)
T ss_dssp             ----CCTTTTHHHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             cccccchhHHHHHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCcccceeeecCHHHHHHHHHHHHcCCCCceEEEeC
Confidence               11233445566778887765422    13788999999999999988887899999999999999999999999975

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.4e-43  Score=302.84  Aligned_cols=271  Identities=17%  Similarity=0.132  Sum_probs=217.9

Q ss_pred             CCCCCCCCC-CCe------EEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe
Q 048785            2 VHVPVPTPR-KDE------VLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI   74 (280)
Q Consensus         2 ~~~~~~~~~-~~e------vlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   74 (280)
                      +++|.|+|+ ++|      |+|||.+++||++|+.++.|..+    ..+|.++|||++|+|+++|++|++|++||||++.
T Consensus        17 ~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~----~~~p~v~GhE~~G~V~~vG~~v~~~~vGDrV~~~   92 (398)
T 1kol_A           17 QKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT----AQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVP   92 (398)
T ss_dssp             EEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC----CCTTCBCCCCEEEEEEEECTTCCSCCTTCEEECC
T ss_pred             EEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC----CCCCcccCcccEEEEEEECCCCCcCCCCCEEEEC
Confidence            578888886 888      99999999999999999988643    3578999999999999999999999999999852


Q ss_pred             ------------------------------ecC----CCCCcceeEEeeccc--ccccCCCCCChhh----hcccchhHH
Q 048785           75 ------------------------------LNH----FSGGGLAEFAMVKES--LTASRPLEVSAAE----GAGLPLAGL  114 (280)
Q Consensus        75 ------------------------------~~~----~~~g~~~~~~~v~~~--~~~~~p~~~~~~~----aa~~~~~~~  114 (280)
                                                    .+.    ...|+|+||+++|++  .++++|+++++++    +|+++.++.
T Consensus        93 ~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~~~~~P~~~~~~~~~~~aa~l~~~~~  172 (398)
T 1kol_A           93 FNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILP  172 (398)
T ss_dssp             SEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHHHHHHTHHHHGGGGTHHH
T ss_pred             CcCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchhCeEEECCCCcchhhhcccccccccHHH
Confidence                                          111    135999999999987  8999999999888    788899999


Q ss_pred             HHHHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCCCC---cccccCC
Q 048785          115 TALEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKTPD---GAALKSP  168 (280)
Q Consensus       115 ~a~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~  168 (280)
                      |||+++. .++                     +|+.+|+ +|+++++ ++++++++++|++ ++++++.+   ....+.+
T Consensus       173 ta~~al~-~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~-~i~~~~~~~~~~~v~~~t  250 (398)
T 1kol_A          173 TGYHGAV-TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE-IADLSLDTPLHEQIAALL  250 (398)
T ss_dssp             HHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE-EEETTSSSCHHHHHHHHH
T ss_pred             HHHHHHH-HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCc-EEccCCcchHHHHHHHHh
Confidence            9999995 333                     8999999 8999986 4789999999997 78876543   1233345


Q ss_pred             CCCcccEEEECCCCC----------------CcccccccccCCcEEEEeCCC-chh-----------hHHHHHhhhhccc
Q 048785          169 SGRKYDAVIHCARGI----------------PWSTFEPNLAENGKVIDLTPT-PSA-----------MLTFAWQKLTFSK  220 (280)
Q Consensus       169 ~~~~~d~v~d~~g~~----------------~~~~~~~~l~~~g~~v~~g~~-~~~-----------~~~~~~~~~~~~~  220 (280)
                      .++++|++|||+|++                .++.++++++++|+++.+|.. ...           ...+.+..++.++
T Consensus       251 ~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (398)
T 1kol_A          251 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKS  330 (398)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCCCCCHHHHHHTT
T ss_pred             CCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEeccccCCcccccccccccccccccHHHHhhcc
Confidence            667899999999986                477899999999999999854 110           1122233445566


Q ss_pred             eeeEEEEEcCCHHHHHHHHHHHHCCCee---EeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          221 KQLVPLLVIPKGENLVFLVKLLKEGKIK---TLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~i~~g~~~---~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      .++.+.. ....+.++++++++++|+++   ++++++|+|+++++||+.+.+++. +|+|+++
T Consensus       331 ~~~~g~~-~~~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~~~~~~~~~-gKvvi~~  391 (398)
T 1kol_A          331 HSFHTGQ-TPVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVP-KKFVIDP  391 (398)
T ss_dssp             CEEEESS-CCHHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHHHHHHHTCS-CEEEECT
T ss_pred             cEEEecc-cChHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHHHHHhCCCc-eEEEEEe
Confidence            6665432 23456789999999999998   567899999999999999998887 9999874

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=1e-43  Score=328.27  Aligned_cols=260  Identities=23%  Similarity=0.233  Sum_probs=219.5

Q ss_pred             CCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCCcceeE
Q 048785            7 PTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEF   86 (280)
Q Consensus         7 ~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~   86 (280)
                      |+++++||+|||.++|||++|+.+..|..+      .|.++|||++|+|+++|++|++|++||||+++    ..|+|+||
T Consensus       234 ~~~~~~eVlV~V~a~gin~~D~~~~~G~~~------~~~~lG~E~aG~V~~vG~~V~~~~vGDrV~~~----~~G~~ae~  303 (795)
T 3slk_A          234 APLGDGEVRIAMRAAGVNFRDALIALGMYP------GVASLGSEGAGVVVETGPGVTGLAPGDRVMGM----IPKAFGPL  303 (795)
T ss_dssp             SCCCSSEEEEEEEEEEECHHHHHHTTTCCS------SCCCSCCCEEEEEEEECSSCCSSCTTCEEEEC----CSSCSSSE
T ss_pred             CCCCCCEEEEEEEEEccCHHHHHHHcCCCC------CCccccceeEEEEEEeCCCCCcCCCCCEEEEE----ecCCCcCE
Confidence            568999999999999999999999988763      34679999999999999999999999999987    57999999


Q ss_pred             EeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEecCCcHH
Q 048785           87 AMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCGARNIE  144 (280)
Q Consensus        87 ~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~~~~~~  144 (280)
                      +++|.+.++++|+++++++||+++++++|||+++.+.++                      +||.+|++||+++++++.+
T Consensus       304 ~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~k~~  383 (795)
T 3slk_A          304 AVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASEDKWQ  383 (795)
T ss_dssp             EEEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGGGGG
T ss_pred             EEeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChHHhh
Confidence            999999999999999999999999999999999865433                      9999999999999766666


Q ss_pred             HHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhh-HHHHHhhhhccce
Q 048785          145 FVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAM-LTFAWQKLTFSKK  221 (280)
Q Consensus       145 ~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~-~~~~~~~~~~~~~  221 (280)
                      .++ +|+++++++++.+  ...++.++++++|+||||+|++.++.++++++++|+++.+|...... ..+..   ..++.
T Consensus       384 ~l~-lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~gg~~~~~~l~~l~~~Gr~v~iG~~~~~~~~~~~~---~~~~~  459 (795)
T 3slk_A          384 AVE-LSREHLASSRTCDFEQQFLGATGGRGVDVVLNSLAGEFADASLRMLPRGGRFLELGKTDVRDPVEVAD---AHPGV  459 (795)
T ss_dssp             GSC-SCGGGEECSSSSTHHHHHHHHSCSSCCSEEEECCCTTTTHHHHTSCTTCEEEEECCSTTCCCHHHHHH---HSSSE
T ss_pred             hhh-cChhheeecCChhHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHhcCCCEEEEeccccccCcccccc---cCCCC
Confidence            555 9999999988776  33456678889999999999999999999999999999998554321 11111   12344


Q ss_pred             eeEEEEEc-----CCHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          222 QLVPLLVI-----PKGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       222 ~~~~~~~~-----~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      .+..+...     ...+.++++++++++|++++++.++|+++++++||+.+.+++..||+||++
T Consensus       460 ~~~~~~l~~~~~~~~~~~l~~~~~l~~~g~l~p~~~~~~~l~~~~eA~~~l~~g~~~GKvVl~~  523 (795)
T 3slk_A          460 SYQAFDTVEAGPQRIGEMLHELVELFEGRVLEPLPVTAWDVRQAPEALRHLSQARHVGKLVLTM  523 (795)
T ss_dssp             EEEECCGGGGHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEGGGHHHHHHHHHHTCCCBEEEEEC
T ss_pred             EEEEeeccccCHHHHHHHHHHHHHHHHcCCcCCCcceeEcHHHHHHHHHHHhcCCccceEEEec
Confidence            44332211     124678999999999999999999999999999999999999999999974

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=1e-43  Score=304.44  Aligned_cols=273  Identities=19%  Similarity=0.174  Sum_probs=217.3

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCC------------CC--------------CCCCCCccccccceEE
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVAR------------PI--------------LPRKFPYIPATDVAGE   54 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~------------~~--------------~~~~~p~~~G~e~~G~   54 (280)
                      ++|+|.|+|+++||+|||.+++||++|+.++.|..+            +.              ....+|.++|||++|+
T Consensus        22 ~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~~~~~~~~p~i~G~e~~G~  101 (379)
T 3iup_A           22 LDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSMAGRLDASMPVGNEGAGV  101 (379)
T ss_dssp             EEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHHHGGGTTEEEECCSCEEEE
T ss_pred             EEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCccccccccccccCCCccceeeeEEE
Confidence            357889999999999999999999999999988521            00              0125689999999999


Q ss_pred             EEEeCCCC-CCCCCCCEEEEeecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh--------
Q 048785           55 IIEVGSEV-KNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG--------  125 (280)
Q Consensus        55 V~~vG~~v-~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~--------  125 (280)
                      |+++|++| ++|++||+|++.    ..|+|+||+++|++.++++|+++++++||++++.++|||+++....+        
T Consensus       102 V~~vG~~v~~~~~vGdrV~~~----~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~g~~vlV~  177 (379)
T 3iup_A          102 VVEAGSSPAAQALMGKTVAAI----GGAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVETMRLEGHSALVH  177 (379)
T ss_dssp             EEEECSSHHHHTTTTCEEEEC----CSCCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHHHHHHHTTCSCEEE
T ss_pred             EEEeCCCcccCCCCCCEEEec----CCCcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhccCCCEEEEE
Confidence            99999999 889999999987    47999999999999999999999999999999999999988754211        


Q ss_pred             -------------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCC-cccc
Q 048785          126 -------------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIP-WSTF  188 (280)
Q Consensus       126 -------------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~-~~~~  188 (280)
                                   +|+.+|++|+++++ +++.++++++|+++++++++.+  ....+.+.++++|++|||+|++. ++.+
T Consensus       178 gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~  257 (379)
T 3iup_A          178 TAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQGAVHVCNAASPTFMQDLTEALVSTGATIAFDATGGGKLGGQI  257 (379)
T ss_dssp             SSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHTTCSCEEETTSTTHHHHHHHHHHHHCCCEEEESCEEESHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCcEEEeCCChHHHHHHHHHhcCCCceEEEECCCchhhHHHH
Confidence                         88899999999995 4889999999999999998766  23334455668999999999865 5677


Q ss_pred             ccccc-----CC-----------cEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcC-----C----HHHHHHHHHHHH
Q 048785          189 EPNLA-----EN-----------GKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIP-----K----GENLVFLVKLLK  243 (280)
Q Consensus       189 ~~~l~-----~~-----------g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~i~  243 (280)
                      +++++     ++           |+++.+|.......  ....+..+++++.++....     .    .+.++.+++++.
T Consensus       258 ~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~~~~~--~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (379)
T 3iup_A          258 LTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTSPT--EFNRNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELK  335 (379)
T ss_dssp             HHHHHHHHHTTCCSCCTTCCCSCEEEEECCCSEEEEE--EECCCSCSCEEEEECCHHHHHHHHCHHHHHHHHHHHHHTTT
T ss_pred             HHhcchhhhccccceeecccccCceEEEecCCCCCcc--ccccccccceEEEEEEeeeecccCCHHHHHHHHHHHHHHHh
Confidence            77774     44           56666654332211  1233445667776654311     1    234577777877


Q ss_pred             CCCeeEeccceecchhH--HHHHHHHhcCCCcCcEEEeC
Q 048785          244 EGKIKTLIDSKHLLSKA--EDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       244 ~g~~~~~~~~~~~~~~~--~~a~~~~~~~~~~gkvvi~~  280 (280)
                      + .++++++++|+|+++  ++||+.+.++...||+||++
T Consensus       336 ~-~l~~~i~~~~~l~~~~~~~A~~~l~~~~~~gKvVv~~  373 (379)
T 3iup_A          336 T-TFASHYSKEISLAEVLDLDMIAVYNKRATGEKYLINP  373 (379)
T ss_dssp             T-TTCCCCSEEEEHHHHTCHHHHHHHTTCCTTCCEEEET
T ss_pred             c-cCCCcceEEecHHHhhhHHHHHHHhcCCCCceEEEeC
Confidence            7 589999999999999  99999999999999999975

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=7.6e-43  Score=297.10  Aligned_cols=266  Identities=17%  Similarity=0.120  Sum_probs=214.6

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCC---CccccccceEEEEEeCCCCCCCCCCCEEEEee---
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKF---PYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL---   75 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~---p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~---   75 (280)
                      +++|.|+|+++||+|||.++|||++|++++.|..+.   ..+   |.++|||++| |+++|++ ++|++||||++..   
T Consensus        16 ~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~~~~~p~v~G~E~~G-V~~vG~~-~~~~vGdrV~~~~~~~   90 (357)
T 2b5w_A           16 IEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGG---FPEGEDHLVLGHEAVG-VVVDPND-TELEEGDIVVPTVRRP   90 (357)
T ss_dssp             EECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTT---SCTTCSEEECCSEEEE-EEEECTT-SSCCTTCEEEECSEEC
T ss_pred             EECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCC---CCCCCCCcccCceeEE-EEEECCC-CCCCCCCEEEECCcCC
Confidence            578999999999999999999999999999987542   245   8999999999 9999999 9999999998751   


Q ss_pred             -------------------------cC-CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhh----h-
Q 048785           76 -------------------------NH-FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS----A-  124 (280)
Q Consensus        76 -------------------------~~-~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~----~-  124 (280)
                                               +. ...|+|+||+++|++.++++|++++ + +|+++.+++|||+++...    . 
T Consensus        91 ~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~-~-~aal~~~~~ta~~al~~~~~~~g~  168 (357)
T 2b5w_A           91 PASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-E-LGFLIEPISITEKALEHAYASRSA  168 (357)
T ss_dssp             CTTCCCHHHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEEECCGGGS-T-TGGGHHHHHHHHHHHHHHHHTTTT
T ss_pred             CCCCCChHHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeEECCCCcc-h-hhhhhchHHHHHHHHHhcCCCCCc
Confidence                                     11 2369999999999999999999999 5 456778899999998431    2 


Q ss_pred             -----h-----------------hh-hhCCCE-EEEEecC-C---cHHHHHhcCCCeeecCCCCCcccccCCCCCcccEE
Q 048785          125 -----G-----------------LA-KLGNSH-VTATCGA-R---NIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAV  176 (280)
Q Consensus       125 -----~-----------------la-~~~G~~-Vi~~~~~-~---~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v  176 (280)
                           +                 +| +.+|++ |++++++ +   +.++++++|++++ ++++.+...+....+ ++|++
T Consensus       169 ~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v-~~~~~~~~~i~~~~g-g~Dvv  246 (357)
T 2b5w_A          169 FDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV-DSRQTPVEDVPDVYE-QMDFI  246 (357)
T ss_dssp             SCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE-ETTTSCGGGHHHHSC-CEEEE
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc-CCCccCHHHHHHhCC-CCCEE
Confidence                 2                 44 889995 9999975 6   8999999999999 887655221322234 89999


Q ss_pred             EECCCCC-CcccccccccCCcEEEEeCCCchhhHHHHHhhh----hccceeeEEEEEcCCHHHHHHHHHHHHCC--C-ee
Q 048785          177 IHCARGI-PWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKL----TFSKKQLVPLLVIPKGENLVFLVKLLKEG--K-IK  248 (280)
Q Consensus       177 ~d~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~g--~-~~  248 (280)
                      |||+|++ .++.++++++++|+++.+|........++...+    ..++.++.+.. ....++++++++++++|  + ++
T Consensus       247 id~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~i~g~~-~~~~~~~~~~~~l~~~g~~~~~~  325 (357)
T 2b5w_A          247 YEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSV-NSHVEHFEAATVTFTKLPKWFLE  325 (357)
T ss_dssp             EECSCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHTTCEEEECC-CCCHHHHHHHHHHHHHSCHHHHH
T ss_pred             EECCCChHHHHHHHHHHhcCCEEEEEeCCCCCCceecHHHHhHHHHhCCeEEEEec-cCCHHHHHHHHHHHHhCchhhhh
Confidence            9999986 588999999999999999855411122223333    56777777754 34578899999999999  9 68


Q ss_pred             EeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          249 TLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       249 ~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      ++++++|+++++++||+.+   ...+|+|+++
T Consensus       326 ~~i~~~~~l~~~~~A~~~~---~~~gKvvi~~  354 (357)
T 2b5w_A          326 DLVTGVHPLSEFEAAFDDD---DTTIKTAIEF  354 (357)
T ss_dssp             HHEEEEEEGGGGGGGGCCS---TTCCEEEEEC
T ss_pred             hhcceeecHHHHHHHHHHh---CCCceEEEEe
Confidence            8889999999999999988   3568999875

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=7.3e-42  Score=284.80  Aligned_cols=257  Identities=24%  Similarity=0.332  Sum_probs=211.1

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +|+|.|+++++||+||+.++|||++|+.+..|..+.  ...+|.++|||++|+|+           ||+|++..   ..|
T Consensus        16 ~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~i~G~e~~G~V~-----------GdrV~~~~---~~G   79 (302)
T 1iz0_A           16 VDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLT--RLHPPFIPGMEVVGVVE-----------GRRYAALV---PQG   79 (302)
T ss_dssp             EECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS--CCCSSBCCCCEEEEEET-----------TEEEEEEC---SSC
T ss_pred             EECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC--CCCCCCcccceEEEEEE-----------CcEEEEec---CCc
Confidence            367889999999999999999999999999986542  12578999999999998           99999875   469


Q ss_pred             cceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhh-h--------------------hhhhCCCEEEEEec-
Q 048785           82 GLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA-G--------------------LAKLGNSHVTATCG-  139 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~-~--------------------la~~~G~~Vi~~~~-  139 (280)
                      +|+||+.+|++.++++|+++++++||+++.+++|||+++.+.+ +                    +++..|++|+++++ 
T Consensus        80 ~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~  159 (302)
T 1iz0_A           80 GLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASR  159 (302)
T ss_dssp             CSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            9999999999999999999999999999999999999996321 1                    88899999999997 


Q ss_pred             CCcHHHHHhcCCCeeecCCC-CCc-ccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhhh
Q 048785          140 ARNIEFVKSLGADEVLDYKT-PDG-AALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLT  217 (280)
Q Consensus       140 ~~~~~~~~~~g~~~v~~~~~-~~~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~  217 (280)
                      +++.+.++++|+++++++++ .+. +.+     +++|++|| +|++.+..++++++++|+++.+|........++...+.
T Consensus       160 ~~~~~~~~~~ga~~~~~~~~~~~~~~~~-----~~~d~vid-~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  233 (302)
T 1iz0_A          160 PEKLALPLALGAEEAATYAEVPERAKAW-----GGLDLVLE-VRGKEVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLM  233 (302)
T ss_dssp             GGGSHHHHHTTCSEEEEGGGHHHHHHHT-----TSEEEEEE-CSCTTHHHHHTTEEEEEEEEEC-------CCCCTTHHH
T ss_pred             HHHHHHHHhcCCCEEEECCcchhHHHHh-----cCceEEEE-CCHHHHHHHHHhhccCCEEEEEeCCCCCCCCcCHHHHH
Confidence            57888999999999998765 331 222     57999999 99988999999999999999998544322122334455


Q ss_pred             ccceeeEEEEE---cCCHHHHHHHHH---HHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          218 FSKKQLVPLLV---IPKGENLVFLVK---LLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       218 ~~~~~~~~~~~---~~~~~~~~~~~~---~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      .++.++.++..   ....++++++++   ++++|++++.++++|+++++++||+.+.+++..||+++++
T Consensus       234 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  302 (302)
T 1iz0_A          234 RRNLAVLGFWLTPLLREGALVEEALGFLLPRLGRELRPVVGPVFPFAEAEAAFRALLDRGHTGKVVVRL  302 (302)
T ss_dssp             HTTCEEEECCHHHHTTCHHHHHHHHHHHGGGBTTTBCCCEEEEEEGGGHHHHHHHTTCTTCCBEEEEEC
T ss_pred             hCCCeEEEEeccchhhhHHHHHHHHhhhHHHHcCCcccccceEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            67777776543   124678899999   9999999999999999999999999999888889999875

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=8e-41  Score=284.82  Aligned_cols=270  Identities=18%  Similarity=0.155  Sum_probs=214.5

Q ss_pred             CCCCCCCC-CCCeEEEEEeeeecChhhHHhHhccC--CCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCC
Q 048785            2 VHVPVPTP-RKDEVLLKVEASSLNAFDWKIKKGVA--RPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHF   78 (280)
Q Consensus         2 ~~~~~~~~-~~~evlV~v~~~~i~~~d~~~~~g~~--~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~   78 (280)
                      +++|.|.| +++||+|||.++|||++|+..+.|..  ....+..+|.++|||++|+|++  ++|++|++||||++.    
T Consensus        32 ~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~--~~v~~~~vGdrV~~~----  105 (357)
T 2zb4_A           32 EEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEE--SKHTNLTKGDFVTSF----  105 (357)
T ss_dssp             EEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEEEEEEEEE--ECSTTCCTTCEEEEE----
T ss_pred             EeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccccEEEEEEe--cCCCCCCCCCEEEec----
Confidence            56788888 99999999999999999998776521  1101235788999999999999  889999999999986    


Q ss_pred             CCCcceeEEeecccccccCCCCC-----ChhhhcccchhHHHHHHHHHhh-----h--h-----------------hhhh
Q 048785           79 SGGGLAEFAMVKESLTASRPLEV-----SAAEGAGLPLAGLTALEALTQS-----A--G-----------------LAKL  129 (280)
Q Consensus        79 ~~g~~~~~~~v~~~~~~~~p~~~-----~~~~aa~~~~~~~~a~~~l~~~-----~--~-----------------la~~  129 (280)
                       .|+|+||+++|++.++++|+++     +++ +|+++.+++|||+++.+.     .  +                 +++.
T Consensus       106 -~G~~aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~  183 (357)
T 2zb4_A          106 -YWPWQTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHF  183 (357)
T ss_dssp             -EEESBSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHH
T ss_pred             -CCCcEEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHH
Confidence             3799999999999999999998     555 778899999999999532     2  2                 7888


Q ss_pred             CCC-EEEEEecC-CcHHHHHh-cCCCeeecCCCCC-cc-cccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCC
Q 048785          130 GNS-HVTATCGA-RNIEFVKS-LGADEVLDYKTPD-GA-ALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPT  204 (280)
Q Consensus       130 ~G~-~Vi~~~~~-~~~~~~~~-~g~~~v~~~~~~~-~~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~  204 (280)
                      .|+ +|++++++ ++.+.+++ +|++.++++++.+ .+ ..+.+.+ ++|++|||+|+..+..++++++++|+++.+|..
T Consensus       184 ~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~-~~d~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~  262 (357)
T 2zb4_A          184 LGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPA-GVDVYFDNVGGNISDTVISQMNENSHIILCGQI  262 (357)
T ss_dssp             TTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTT-CEEEEEESCCHHHHHHHHHTEEEEEEEEECCCG
T ss_pred             CCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCC-CCCEEEECCCHHHHHHHHHHhccCcEEEEECCc
Confidence            999 99999975 67788876 9999999887655 22 2233334 899999999987788999999999999999854


Q ss_pred             chhhHHH---------HHhhhhccceeeEEEEEcC----CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCC
Q 048785          205 PSAMLTF---------AWQKLTFSKKQLVPLLVIP----KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGH  271 (280)
Q Consensus       205 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~  271 (280)
                      ......+         ....+..+++++.++....    ..+.++++++++++|++++.+..+|+|+++++||+.+.+++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~  342 (357)
T 2zb4_A          263 SQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMMTGG  342 (357)
T ss_dssp             GGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTCCCCCEEEEECGGGHHHHHHHHHTTC
T ss_pred             cccccCccccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHHHHHHHcCCCcCccceecCHHHHHHHHHHHHcCC
Confidence            3211001         0133455667776654211    25678999999999999987777899999999999999988


Q ss_pred             CcCcEEEeC
Q 048785          272 ATGKIILEP  280 (280)
Q Consensus       272 ~~gkvvi~~  280 (280)
                      ..||+|+++
T Consensus       343 ~~gKvvi~~  351 (357)
T 2zb4_A          343 NIGKQIVCI  351 (357)
T ss_dssp             CSBEEEEEC
T ss_pred             CCceEEEEE
Confidence            889999874

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=7.3e-41  Score=285.82  Aligned_cols=266  Identities=14%  Similarity=0.114  Sum_probs=209.9

Q ss_pred             CCCCCCCCCC-CeEEEEEeeeecChhhHHhHhc--cCCCCCCCCC---CccccccceEEEEEeCCCCCCCCCCCEEEEee
Q 048785            2 VHVPVPTPRK-DEVLLKVEASSLNAFDWKIKKG--VARPILPRKF---PYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL   75 (280)
Q Consensus         2 ~~~~~~~~~~-~evlV~v~~~~i~~~d~~~~~g--~~~~~~~~~~---p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~   75 (280)
                      +++|.|+|++ +||+|||.++|||++|+.++.|  ..+.   ..+   |.++|||++|+|++  ++ ++|++||||++..
T Consensus        16 ~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~---~~~~~~p~v~G~E~~G~V~~--~~-~~~~~GDrV~~~~   89 (366)
T 2cdc_A           16 KDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLST---LPKGKDFLVLGHEAIGVVEE--SY-HGFSQGDLVMPVN   89 (366)
T ss_dssp             EECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC----------CCSCEECCSEEEEEECS--CC-SSCCTTCEEEECS
T ss_pred             EECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCC---CCcCCCCCcCCcceEEEEEe--CC-CCCCCCCEEEEcC
Confidence            5788899999 9999999999999999999988  4431   245   89999999999999  77 8899999998742


Q ss_pred             --------------------------cCC-CCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHH--h----
Q 048785           76 --------------------------NHF-SGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT--Q----  122 (280)
Q Consensus        76 --------------------------~~~-~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~--~----  122 (280)
                                                +.. ..|+|+||+++|++.++++|++++ ++|| ++.++.|||+++.  .    
T Consensus        90 ~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~  167 (366)
T 2cdc_A           90 RRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIE-DIGI-LAQPLADIEKSIEEILEVQK  167 (366)
T ss_dssp             EECCSSSHHHHTTCGGGCSSSCCEEETTBEECCSCBSEEEECGGGEEEECGGGT-TTGG-GHHHHHHHHHHHHHHHHHGG
T ss_pred             CCCCCCChhhhCcCcccCCCCCcccCCccCCCCceeEEEEechHHeEECcCCcc-hhhh-hcCcHHHHHHHHHhhhhccc
Confidence                                      222 469999999999999999999999 7764 6778889999996  2    


Q ss_pred             --h--h-------h-----------------hhhhCCCEEEEEec-C---CcHHHHHhcCCCeeecCCCCC-cccccCCC
Q 048785          123 --S--A-------G-----------------LAKLGNSHVTATCG-A---RNIEFVKSLGADEVLDYKTPD-GAALKSPS  169 (280)
Q Consensus       123 --~--~-------~-----------------la~~~G~~Vi~~~~-~---~~~~~~~~~g~~~v~~~~~~~-~~~~~~~~  169 (280)
                        .  .       +                 +++..|++|+++++ +   ++.++++++|++.+ + ++ + .+.+..+.
T Consensus       168 ~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v-~-~~-~~~~~~~~~~  244 (366)
T 2cdc_A          168 RVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYY-N-SS-NGYDKLKDSV  244 (366)
T ss_dssp             GSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEE-E-CT-TCSHHHHHHH
T ss_pred             CccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCcee-c-hH-HHHHHHHHhC
Confidence              1  2       3                 78889999999996 4   67888999999988 7 55 4 22222233


Q ss_pred             CCcccEEEECCCCC-Cc-ccccccccCCcEEEEeCCCchhhHHHHHhh---hhccceeeEEEEEcCCHHHHHHHHHHHHC
Q 048785          170 GRKYDAVIHCARGI-PW-STFEPNLAENGKVIDLTPTPSAMLTFAWQK---LTFSKKQLVPLLVIPKGENLVFLVKLLKE  244 (280)
Q Consensus       170 ~~~~d~v~d~~g~~-~~-~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  244 (280)
                       +++|++|||+|+. .+ +.++++++++|+++.+|........++...   +..++.++.+.. ....++++++++++++
T Consensus       245 -~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~-~~~~~~~~~~~~l~~~  322 (366)
T 2cdc_A          245 -GKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLV-NGQKPHFQQAVVHLAS  322 (366)
T ss_dssp             -CCEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCSCEEEEEHHHHHHHHHTTCEEEECC-CCCHHHHHHHHHHHHH
T ss_pred             -CCCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCCCccccChhhhHHHHhcCcEEEEec-CCCHHHHHHHHHHHHc
Confidence             6899999999986 47 899999999999999986543211222233   566777777754 3457889999999999


Q ss_pred             CC------eeEeccceecchhHHHHHHHH-hcCCCcCcEEEeC
Q 048785          245 GK------IKTLIDSKHLLSKAEDAWAKG-ADGHATGKIILEP  280 (280)
Q Consensus       245 g~------~~~~~~~~~~~~~~~~a~~~~-~~~~~~gkvvi~~  280 (280)
                      |+      ++++++++|+|+++++||+.+ .++...+|+|+++
T Consensus       323 g~i~~~~~~~~~i~~~~~l~~~~~A~~~l~~~~~~~gKvvi~~  365 (366)
T 2cdc_A          323 WKTLYPKAAKMLITKTVSINDEKELLKVLREKEHGEIKIRILW  365 (366)
T ss_dssp             HHHHSHHHHTTSEEEEEETTCHHHHHHHHHCCCTTCCEEEEEC
T ss_pred             CCCCcccchhhcEEEEEcHHHHHHHHHHHhhhcCCceEEEEec
Confidence            99      668888999999999999994 3466789999875

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=7.1e-39  Score=270.35  Aligned_cols=264  Identities=21%  Similarity=0.249  Sum_probs=209.2

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGG   81 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g   81 (280)
                      +|+|.|+|+++||+|||.++|||+.|... .+      +..+|.++|||++|+|++.  ++++|++||||++.      |
T Consensus        29 ~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~~------~~~~p~~~g~e~~G~Vv~~--~v~~~~vGdrV~~~------g   93 (333)
T 1v3u_A           29 KTVELPPLKNGEVLLEALFLSVDPYMRIA-SK------RLKEGAVMMGQQVARVVES--KNSAFPAGSIVLAQ------S   93 (333)
T ss_dssp             EEEECCCCCTTCEEEEEEEEECCTHHHHH-TT------TCCTTSBCCCCEEEEEEEE--SCTTSCTTCEEEEC------C
T ss_pred             EeCCCCCCCCCEEEEEEEEeccCHHHccc-cC------cCCCCcccccceEEEEEec--CCCCCCCCCEEEec------C
Confidence            56788999999999999999999998732 11      2256789999999999995  67889999999974      7


Q ss_pred             cceeEEeecccccccCCCC----CChhh-hcccchhHHHHHHHHHhhhh----------------------hhhhCCCEE
Q 048785           82 GLAEFAMVKESLTASRPLE----VSAAE-GAGLPLAGLTALEALTQSAG----------------------LAKLGNSHV  134 (280)
Q Consensus        82 ~~~~~~~v~~~~~~~~p~~----~~~~~-aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~V  134 (280)
                      +|+||+.+|.+.++++|++    +++++ +|+++.+++|||+++.+.++                      +++..|++|
T Consensus        94 ~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V  173 (333)
T 1v3u_A           94 GWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKV  173 (333)
T ss_dssp             CSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEE
T ss_pred             ceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEE
Confidence            8999999999999999997    88887 48889999999999965433                      777899999


Q ss_pred             EEEecC-CcHHHHHhcCCCeeecCCC-CC-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhh---
Q 048785          135 TATCGA-RNIEFVKSLGADEVLDYKT-PD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAM---  208 (280)
Q Consensus       135 i~~~~~-~~~~~~~~~g~~~v~~~~~-~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~---  208 (280)
                      ++++++ ++.+.++++|++.++|+++ .+ ...+....++++|++|||+|++.+..++++++++|+++.+|......   
T Consensus       174 ~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  253 (333)
T 1v3u_A          174 VGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMD  253 (333)
T ss_dssp             EEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCCC------
T ss_pred             EEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCChHHHHHHHHHHhcCCEEEEEeccccccCCC
Confidence            999965 7788888999999998876 43 22222222257999999999988889999999999999998543210   


Q ss_pred             ---HHHHHhhhhccceeeEEEEEcC-----CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          209 ---LTFAWQKLTFSKKQLVPLLVIP-----KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       209 ---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                         ...+...+.++++++.++....     ..+.++++++++++|++++.+..+++|+++++||+.+.+++..||+|+++
T Consensus       254 ~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  333 (333)
T 1v3u_A          254 QLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEHVTKGFENMPAAFIEMLNGANLGKAVVTA  333 (333)
T ss_dssp             -CCBCCCHHHHHHTTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred             CCCCCcCHHHHhhcCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccCccccccCHHHHHHHHHHHHcCCCCceEEEeC
Confidence               0113345566778877754321     14678899999999999887766789999999999999988889999975

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=1.3e-38  Score=270.05  Aligned_cols=270  Identities=20%  Similarity=0.260  Sum_probs=208.8

Q ss_pred             CCCCCC-CCCCeEEEEEeeeecChhhHHhHhccCCCC-CCCCCCccccccceEEEEE--eCCCCCCCCCCCEEEEeecCC
Q 048785            3 HVPVPT-PRKDEVLLKVEASSLNAFDWKIKKGVARPI-LPRKFPYIPATDVAGEIIE--VGSEVKNFKAGYNVVAILNHF   78 (280)
Q Consensus         3 ~~~~~~-~~~~evlV~v~~~~i~~~d~~~~~g~~~~~-~~~~~p~~~G~e~~G~V~~--vG~~v~~~~~Gd~V~~~~~~~   78 (280)
                      ++|.|. |+++||+|||.++++|+.|. ...|...+. ....+|.++|||++|++++  +|+++++|++||||++.    
T Consensus        29 ~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G~~~~GvV~~~v~~~~vGdrV~~~----  103 (345)
T 2j3h_A           29 TVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGI----  103 (345)
T ss_dssp             EEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEEEEEEEEEEECSTTCCTTCEEEEE----
T ss_pred             ecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeecceEEEEEecCCCCCCCCCEEEee----
Confidence            667776 89999999999999998875 345543210 0014688999999999999  99999999999999875    


Q ss_pred             CCCcceeEEeecccc--cccCCC---CCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCC
Q 048785           79 SGGGLAEFAMVKESL--TASRPL---EVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGN  131 (280)
Q Consensus        79 ~~g~~~~~~~v~~~~--~~~~p~---~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G  131 (280)
                        |+|+||+.++++.  ++++|+   .++++ +|+++++++|||+++.+.++                      +++..|
T Consensus       104 --g~~aey~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G  180 (345)
T 2j3h_A          104 --VAWEEYSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMG  180 (345)
T ss_dssp             --EESBSEEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTT
T ss_pred             --cCceeEEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCC
Confidence              6899999999876  999996   35655 67888899999999965433                      788899


Q ss_pred             CEEEEEecC-CcHHHHH-hcCCCeeecCCCC-C-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchh
Q 048785          132 SHVTATCGA-RNIEFVK-SLGADEVLDYKTP-D-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSA  207 (280)
Q Consensus       132 ~~Vi~~~~~-~~~~~~~-~~g~~~v~~~~~~-~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~  207 (280)
                      ++|++++++ ++.+.++ ++|++.++|+++. + ...+....++++|++|||+|+..+..++++++++|+++.+|.....
T Consensus       181 ~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~G~~~~~  260 (345)
T 2j3h_A          181 CYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMISQY  260 (345)
T ss_dssp             CEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCGGGT
T ss_pred             CEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEcccccc
Confidence            999999965 7888887 7999999987654 3 2222222246799999999997788999999999999999854321


Q ss_pred             -----hHHHHHhhhhccceeeEEEEEcC----CHHHHHHHHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEE
Q 048785          208 -----MLTFAWQKLTFSKKQLVPLLVIP----KGENLVFLVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIIL  278 (280)
Q Consensus       208 -----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi  278 (280)
                           ...++...+.++++++.++....    ..+.++++++++++|++++.+.++|+|+++++||+.+.+++..||+|+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv  340 (345)
T 2j3h_A          261 NLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVV  340 (345)
T ss_dssp             TCSSCCCBSCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCCEEEEESGGGSHHHHHHHHTTCCSSEEEE
T ss_pred             ccCCccccccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHHCCCCcCcccccCCHHHHHHHHHHHHcCCCceEEEE
Confidence                 11122334555677776644221    124588999999999999888788999999999999999998999998


Q ss_pred             eC
Q 048785          279 EP  280 (280)
Q Consensus       279 ~~  280 (280)
                      .+
T Consensus       341 ~~  342 (345)
T 2j3h_A          341 VV  342 (345)
T ss_dssp             ES
T ss_pred             Ee
Confidence            74

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.97  E-value=7.1e-31  Score=265.28  Aligned_cols=257  Identities=18%  Similarity=0.196  Sum_probs=202.0

Q ss_pred             CCeEEEEEeeeecChhhHHhHhccCCCCC----CCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCCcceeE
Q 048785           11 KDEVLLKVEASSLNAFDWKIKKGVARPIL----PRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGGLAEF   86 (280)
Q Consensus        11 ~~evlV~v~~~~i~~~d~~~~~g~~~~~~----~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~   86 (280)
                      ++||+|+|.++|+|+.|+.+..|..+...    ....|.++|+|++|+|.          +||+|+++.   ..|+|++|
T Consensus      1559 ~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~----------vGdrV~g~~---~~G~~Aey 1625 (2512)
T 2vz8_A         1559 CQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA----------SGRRVMGMV---PAEGLATS 1625 (2512)
T ss_dssp             HHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET----------TSCCEEEEC---SSCCSBSE
T ss_pred             CCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc----------cCCEEEEee---cCCceeeE
Confidence            78999999999999999999998764211    11346789999999873          799999874   46999999


Q ss_pred             EeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEecC-CcH
Q 048785           87 AMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCGA-RNI  143 (280)
Q Consensus        87 ~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~~-~~~  143 (280)
                      +++|++.++++|+++++++||+++++++|||+++...++                      +|+..|++|++++++ ++.
T Consensus      1626 v~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~ 1705 (2512)
T 2vz8_A         1626 VLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKR 1705 (2512)
T ss_dssp             EECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             EEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhh
Confidence            999999999999999999999999999999999965443                      899999999999965 778


Q ss_pred             HHHHh----cCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhhh
Q 048785          144 EFVKS----LGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLT  217 (280)
Q Consensus       144 ~~~~~----~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~  217 (280)
                      +++++    +|+++++++++.+  ...+..+.++++|+||||++++.+..++++++++|+++.+|.............+.
T Consensus      1706 ~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~g~~~l~~~l~~L~~~Gr~V~iG~~~~~~~~~~~~~~~ 1785 (2512)
T 2vz8_A         1706 AYLQARFPQLDETCFANSRDTSFEQHVLRHTAGKGVDLVLNSLAEEKLQASVRCLAQHGRFLEIGKFDLSNNHALGMAVF 1785 (2512)
T ss_dssp             HHHHHHCTTCCSTTEEESSSSHHHHHHHHTTTSCCEEEEEECCCHHHHHHHHTTEEEEEEEEECCCHHHHTTCEEEGGGG
T ss_pred             HHHHhhcCCCCceEEecCCCHHHHHHHHHhcCCCCceEEEECCCchHHHHHHHhcCCCcEEEEeecccccccCccccccc
Confidence            88875    7899999987765  23445677889999999999888999999999999999998433211000111233


Q ss_pred             ccceeeEEEEEcC----CHHHHHH----HHHHHHCCCeeEeccceecchhHHHHHHHHhcCCCcCcEEEeC
Q 048785          218 FSKKQLVPLLVIP----KGENLVF----LVKLLKEGKIKTLIDSKHLLSKAEDAWAKGADGHATGKIILEP  280 (280)
Q Consensus       218 ~~~~~~~~~~~~~----~~~~~~~----~~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  280 (280)
                      .++.++.+.....    ..+.+++    +.+++.+|+++++++++|+++++++|++.+.+++..||+|+++
T Consensus      1786 ~~~~~~~g~~l~~~~~~~~~~~~~~l~~l~~~~~~g~l~p~i~~~f~l~ei~eA~~~l~~g~~~GKvVi~~ 1856 (2512)
T 2vz8_A         1786 LKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVFPRTKVEAAFRYMAQGKHIGKVVIQV 1856 (2512)
T ss_dssp             GGCCEEEECCGGGTTSSCCHHHHHHHHHHHHHHTTTCSCCCCEEEEESSTHHHHHHHHHTTCCSSEEEEEC
T ss_pred             ccCCcEEEeeHHHHhhhCHHHHHHHHHHHHHHHHcCCcCCCcceEecHHHHHHHHHhhhccCccceEEEEC
Confidence            4566665543211    1233444    4445567889999999999999999999999999899999864

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.67  E-value=1.4e-17  Score=129.65  Aligned_cols=162  Identities=21%  Similarity=0.251  Sum_probs=106.8

Q ss_pred             cccccCCCCCChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEecC-CcHHHHHh
Q 048785           92 SLTASRPLEVSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCGA-RNIEFVKS  148 (280)
Q Consensus        92 ~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~~-~~~~~~~~  148 (280)
                      +.++++|+++++++||+++.++.|||+++.+.++                      +++..|++|++++++ ++.+.+++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~   81 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR   81 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            4678999999999999999999999999965433                      667789999999975 66778888


Q ss_pred             cCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchh-hHHHHHhhhhccceeeEE
Q 048785          149 LGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSA-MLTFAWQKLTFSKKQLVP  225 (280)
Q Consensus       149 ~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~  225 (280)
                      +|++.+++.++.+  ....+.+.++++|++|||+|...+..++++++++|+++.+|..... ...+... .+.++.++.+
T Consensus        82 ~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~~~~  160 (198)
T 1pqw_A           82 LGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYADASLGLA-ALAKSASFSV  160 (198)
T ss_dssp             TCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTTTCEEEGG-GGTTTCEEEE
T ss_pred             cCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCchHHHHHHHHHhccCCEEEEEcCCCCcCcCcCChh-HhcCCcEEEE
Confidence            9999888876654  1222334455799999999987788999999999999999854321 1111111 2235555543


Q ss_pred             EEE------cC--CHHHHHHHHHHHHCCCeeEeccce
Q 048785          226 LLV------IP--KGENLVFLVKLLKEGKIKTLIDSK  254 (280)
Q Consensus       226 ~~~------~~--~~~~~~~~~~~i~~g~~~~~~~~~  254 (280)
                      +..      ..  ..+.++++++++++|++++.+.++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~  197 (198)
T 1pqw_A          161 VDLDLNLKLQPARYRQLLQHILQHVADGKLEVLPVTA  197 (198)
T ss_dssp             CCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCCCCC-
T ss_pred             EehHHhhccCHHHHHHHHHHHHHHHHcCCccCCCCCc
Confidence            211      11  246789999999999998865543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.62  E-value=0.00018  Score=60.60  Aligned_cols=116  Identities=11%  Similarity=0.091  Sum_probs=68.7

Q ss_pred             hhhhCCCEEEEEecC-CcHHHHHhcCCCe--eecCCCCC-cccccCCCCCcccEEEECCCCCC-------cccccccccC
Q 048785          126 LAKLGNSHVTATCGA-RNIEFVKSLGADE--VLDYKTPD-GAALKSPSGRKYDAVIHCARGIP-------WSTFEPNLAE  194 (280)
Q Consensus       126 la~~~G~~Vi~~~~~-~~~~~~~~~g~~~--v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~-------~~~~~~~l~~  194 (280)
                      +++.+|++|++++++ ++.+.+++.++..  +++.+... .+.+     .++|++|+|++.+.       .+..++.+++
T Consensus       185 ~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~  259 (361)
T 1pjc_A          185 MAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAV-----AEADLLIGAVLVPGRRAPILVPASLVEQMRT  259 (361)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHH-----HTCSEEEECCCCTTSSCCCCBCHHHHTTSCT
T ss_pred             HHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHH-----cCCCEEEECCCcCCCCCCeecCHHHHhhCCC
Confidence            777889999998865 7777777665443  23322111 1111     25899999998643       3456788999


Q ss_pred             CcEEEEeCCCchh------hHHHHHhhhhccceeeEEEEEc-----------CCHHHHHHHHHHHHCCC
Q 048785          195 NGKVIDLTPTPSA------MLTFAWQKLTFSKKQLVPLLVI-----------PKGENLVFLVKLLKEGK  246 (280)
Q Consensus       195 ~g~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~g~  246 (280)
                      +|+++.++...+.      ...++...+..++..+.+....           .....++.+++++.+|.
T Consensus       260 g~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~~~~~l~~l~~~G~  328 (361)
T 1pjc_A          260 GSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTLPYVVKLANQGL  328 (361)
T ss_dssp             TCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             CCEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999754422      1112222233445554432210           01344678888888873

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.52  E-value=2.2e-06  Score=73.54  Aligned_cols=150  Identities=10%  Similarity=0.026  Sum_probs=96.2

Q ss_pred             ccccccceEEEEEeCCCCCCCCCCCEEEE------eecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHH
Q 048785           45 YIPATDVAGEIIEVGSEVKNFKAGYNVVA------ILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALE  118 (280)
Q Consensus        45 ~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~------~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~  118 (280)
                      ...|++.++.|.++|+.++++.+|+.++.      +......|++++++..+...++++|+.++.+.++.. .+..++|.
T Consensus        75 ~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~-~~~s~a~~  153 (404)
T 1gpj_A           75 VKRGSEAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTLDEALKIVFRRAINLGKRAREETRISE-GAVSIGSA  153 (404)
T ss_dssp             EEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSTTC-SCCSHHHH
T ss_pred             eecCchHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhccCcchhhhcC-CCccHHHH
Confidence            46799999999999999999999998731      110113466788888888888888888776665543 23335665


Q ss_pred             HHHhh-------hh-----------------hhhhCCC-EEEEEecC-CcH-HHHHhcCCCeeecCCCCCcccccCCCCC
Q 048785          119 ALTQS-------AG-----------------LAKLGNS-HVTATCGA-RNI-EFVKSLGADEVLDYKTPDGAALKSPSGR  171 (280)
Q Consensus       119 ~l~~~-------~~-----------------la~~~G~-~Vi~~~~~-~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~~  171 (280)
                      ++...       .+                 .++..|+ +|+++.+. ++. ++++++|++ ++++.+. .+.+     .
T Consensus       154 av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~~~l-~~~l-----~  226 (404)
T 1gpj_A          154 AVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-AVRFDEL-VDHL-----A  226 (404)
T ss_dssp             HHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCGGGH-HHHH-----H
T ss_pred             HHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-eecHHhH-HHHh-----c
Confidence            54321       11                 5556798 89988865 554 677788875 3333211 1111     3


Q ss_pred             cccEEEECCCCCC-cc--ccccc--c--cCCcEEEEeC
Q 048785          172 KYDAVIHCARGIP-WS--TFEPN--L--AENGKVIDLT  202 (280)
Q Consensus       172 ~~d~v~d~~g~~~-~~--~~~~~--l--~~~g~~v~~g  202 (280)
                      ++|+|++|++.+. +.  ..+..  +  ++++.++.++
T Consensus       227 ~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vd  264 (404)
T 1gpj_A          227 RSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIID  264 (404)
T ss_dssp             TCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred             CCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEE
Confidence            5899999998654 21  33444  3  4566555554

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=96.09  E-value=0.00063  Score=59.37  Aligned_cols=71  Identities=14%  Similarity=0.030  Sum_probs=52.9

Q ss_pred             hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCC-cc-cccccccCCcEEEEeC
Q 048785          126 LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIP-WS-TFEPNLAENGKVIDLT  202 (280)
Q Consensus       126 la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~~-~~~~~l~~~g~~v~~g  202 (280)
                      .++.+|++|++++++ .+.+.+.+.|++ +++.    .+.+     .++|++++|+++.. +. ..++.++++|+++.+|
T Consensus       292 ~lka~Ga~Viv~d~~~~~~~~A~~~Ga~-~~~l----~e~l-----~~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG  361 (494)
T 3ce6_A          292 AMKGQGARVSVTEIDPINALQAMMEGFD-VVTV----EEAI-----GDADIVVTATGNKDIIMLEHIKAMKDHAILGNIG  361 (494)
T ss_dssp             HHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCH----HHHG-----GGCSEEEECSSSSCSBCHHHHHHSCTTCEEEECS
T ss_pred             HHHHCCCEEEEEeCCHHHHHHHHHcCCE-EecH----HHHH-----hCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeC
Confidence            677889999999965 666778888875 3221    1111     35899999999766 55 6888999999999998


Q ss_pred             CCch
Q 048785          203 PTPS  206 (280)
Q Consensus       203 ~~~~  206 (280)
                      ....
T Consensus       362 ~~~~  365 (494)
T 3ce6_A          362 HFDN  365 (494)
T ss_dssp             SSGG
T ss_pred             CCCC
Confidence            6543

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.73  E-value=0.0042  Score=52.68  Aligned_cols=121  Identities=19%  Similarity=0.076  Sum_probs=70.7

Q ss_pred             hhhhCCCEEEEEec-CCcHHHHHhcCCCee-ecCCCC-------------C-------cccccCCCCCcccEEEECC---
Q 048785          126 LAKLGNSHVTATCG-ARNIEFVKSLGADEV-LDYKTP-------------D-------GAALKSPSGRKYDAVIHCA---  180 (280)
Q Consensus       126 la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v-~~~~~~-------------~-------~~~~~~~~~~~~d~v~d~~---  180 (280)
                      +++.+|++|+++++ +++.+.++++|++.+ ++.++.             +       ...+.. .-.++|++|+|+   
T Consensus       190 ~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~-~~~~aDvVi~~~~~p  268 (384)
T 1l7d_A          190 TAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLK-ELVKTDIAITTALIP  268 (384)
T ss_dssp             HHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHH-HHTTCSEEEECCCCT
T ss_pred             HHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHHH-HhCCCCEEEECCccC
Confidence            78889999888885 478888888998754 233110             0       000110 013589999999   


Q ss_pred             CCCC---c-ccccccccCCcEEEEeCCCchhh--HHHHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCCee
Q 048785          181 RGIP---W-STFEPNLAENGKVIDLTPTPSAM--LTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKIK  248 (280)
Q Consensus       181 g~~~---~-~~~~~~l~~~g~~v~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~  248 (280)
                      |.+.   + ..+++.|++++.++.++...+..  ...+...+..++.++.+... ......+.+.+++.++.+.
T Consensus       269 g~~~~~li~~~~l~~mk~g~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~-~p~~~~~~a~~l~~~~~~~  341 (384)
T 1l7d_A          269 GKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTN-VPSRVAADASPLFAKNLLN  341 (384)
T ss_dssp             TSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSS-GGGGGHHHHHHHHHHHHHH
T ss_pred             CCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCeecccCCcEEEECCEEEEEeCC-CcchhHHHHHHHHHHhHHH
Confidence            5322   2 46788999999999997432211  11122233445666655432 2223355577888877653

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.64  E-value=0.0068  Score=51.12  Aligned_cols=116  Identities=13%  Similarity=0.111  Sum_probs=63.2

Q ss_pred             hhhhCCCEEEEEecC-CcHHHHHh-cCCCeeecCCCCC--cccccCCCCCcccEEEECCCCCC-------cccccccccC
Q 048785          126 LAKLGNSHVTATCGA-RNIEFVKS-LGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIP-------WSTFEPNLAE  194 (280)
Q Consensus       126 la~~~G~~Vi~~~~~-~~~~~~~~-~g~~~v~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~~-------~~~~~~~l~~  194 (280)
                      +++.+|++|++++++ ++.+.+.+ +|.....+..+..  .+.+     .++|++++|++.+.       ...+++.+++
T Consensus       184 ~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~-----~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~  258 (369)
T 2eez_A          184 IALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSV-----QHADLLIGAVLVPGAKAPKLVTRDMLSLMKE  258 (369)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHH-----HHCSEEEECCC-------CCSCHHHHTTSCT
T ss_pred             HHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHH-----hCCCEEEECCCCCccccchhHHHHHHHhhcC
Confidence            677889999999865 66666654 6765322222111  1111     25899999998642       4567888999


Q ss_pred             CcEEEEeCCCchh------hHHHHHhhhhccceeeEEEEEc-----------CCHHHHHHHHHHHHCCC
Q 048785          195 NGKVIDLTPTPSA------MLTFAWQKLTFSKKQLVPLLVI-----------PKGENLVFLVKLLKEGK  246 (280)
Q Consensus       195 ~g~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~~g~  246 (280)
                      +|+++.++...+.      +..++...+..++..+.+....           .....++.+++++.+|.
T Consensus       259 gg~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~l~~l~~~g~  327 (369)
T 2eez_A          259 GAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKLAEKGL  327 (369)
T ss_dssp             TCEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            9999998754432      1122222333445544332210           12345677888887774

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=95.27  E-value=0.01  Score=46.68  Aligned_cols=74  Identities=15%  Similarity=0.057  Sum_probs=46.2

Q ss_pred             hhhhCCCEEEEEec-CCcHHHHHh----cCC-Cee-ecCCCCCcccccCC-CCCcccEEEECCCCC--CcccccccccCC
Q 048785          126 LAKLGNSHVTATCG-ARNIEFVKS----LGA-DEV-LDYKTPDGAALKSP-SGRKYDAVIHCARGI--PWSTFEPNLAEN  195 (280)
Q Consensus       126 la~~~G~~Vi~~~~-~~~~~~~~~----~g~-~~v-~~~~~~~~~~~~~~-~~~~~d~v~d~~g~~--~~~~~~~~l~~~  195 (280)
                      +++. +.+|++++. ++..+.+++    .+. ..+ +...+    ..... .+.+||+|+.+.+.+  .+..+.+.|+++
T Consensus       109 l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d----~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g  183 (248)
T 2yvl_A          109 LSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVD----FKDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEG  183 (248)
T ss_dssp             HHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSC----TTTSCCCTTCBSEEEECSSCGGGGHHHHHHHBCTT
T ss_pred             HHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcC----hhhcccCCCcccEEEECCcCHHHHHHHHHHHcCCC
Confidence            5556 779999994 455555543    342 111 11111    11112 345799999987754  377888999999


Q ss_pred             cEEEEeCCC
Q 048785          196 GKVIDLTPT  204 (280)
Q Consensus       196 g~~v~~g~~  204 (280)
                      |+++.....
T Consensus       184 G~l~~~~~~  192 (248)
T 2yvl_A          184 APVGFLLPT  192 (248)
T ss_dssp             CEEEEEESS
T ss_pred             CEEEEEeCC
Confidence            999876543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=92.56  E-value=0.089  Score=44.39  Aligned_cols=72  Identities=13%  Similarity=0.137  Sum_probs=48.6

Q ss_pred             hhhhCCCEEEEEecC-CcHHHHHh-cCCCeeecCCCC-C-cccccCCCCCcccEEEECCCCCC-------cccccccccC
Q 048785          126 LAKLGNSHVTATCGA-RNIEFVKS-LGADEVLDYKTP-D-GAALKSPSGRKYDAVIHCARGIP-------WSTFEPNLAE  194 (280)
Q Consensus       126 la~~~G~~Vi~~~~~-~~~~~~~~-~g~~~v~~~~~~-~-~~~~~~~~~~~~d~v~d~~g~~~-------~~~~~~~l~~  194 (280)
                      +++.+|++|++++++ ++.+.+++ +|+....+.... + .+.+     .++|++++|++.+.       ....++.|++
T Consensus       186 ~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l-----~~aDvVi~~~~~p~~~t~~li~~~~l~~mk~  260 (377)
T 2vhw_A          186 IANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAV-----KRADLVIGAVLVPGAKAPKLVSNSLVAHMKP  260 (377)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHH-----HHCSEEEECCCCTTSCCCCCBCHHHHTTSCT
T ss_pred             HHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHH-----cCCCEEEECCCcCCCCCcceecHHHHhcCCC
Confidence            677889999999865 66666665 676532221111 1 1111     25899999997543       4567888999


Q ss_pred             CcEEEEeC
Q 048785          195 NGKVIDLT  202 (280)
Q Consensus       195 ~g~~v~~g  202 (280)
                      +|+++.++
T Consensus       261 g~~iV~va  268 (377)
T 2vhw_A          261 GAVLVDIA  268 (377)
T ss_dssp             TCEEEEGG
T ss_pred             CcEEEEEe
Confidence            99999987

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=91.36  E-value=0.17  Score=41.05  Aligned_cols=72  Identities=18%  Similarity=0.214  Sum_probs=44.8

Q ss_pred             hhhCCCEEEEEec-CCcHHHHHh----cCCCeeecCCCCCcccccCCCCCcccEEEECCCCC----CcccccccccCCcE
Q 048785          127 AKLGNSHVTATCG-ARNIEFVKS----LGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGI----PWSTFEPNLAENGK  197 (280)
Q Consensus       127 a~~~G~~Vi~~~~-~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~----~~~~~~~~l~~~g~  197 (280)
                      ++..|++|++++. ++..+.+++    .|.+.+ .....+...   .....||+|+.+...+    .++.+.+.|+|+|+
T Consensus       142 A~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v-~~v~gDa~~---l~d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~  217 (298)
T 3fpf_A          142 SHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGV-NVITGDETV---IDGLEFDVLMVAALAEPKRRVFRNIHRYVDTETR  217 (298)
T ss_dssp             HHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSE-EEEESCGGG---GGGCCCSEEEECTTCSCHHHHHHHHHHHCCTTCE
T ss_pred             HHccCCEEEEEECCHHHHHHHHHHHHhcCCCCe-EEEECchhh---CCCCCcCEEEECCCccCHHHHHHHHHHHcCCCcE
Confidence            4456899999995 466555543    353222 111111111   1256799999765543    27788999999999


Q ss_pred             EEEeC
Q 048785          198 VIDLT  202 (280)
Q Consensus       198 ~v~~g  202 (280)
                      ++...
T Consensus       218 Lvv~~  222 (298)
T 3fpf_A          218 IIYRT  222 (298)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            98664

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=90.53  E-value=0.27  Score=39.32  Aligned_cols=75  Identities=17%  Similarity=0.142  Sum_probs=44.0

Q ss_pred             hhhhC--CCEEEEEec-CCcHHHHH----hcCC-CeeecCCCCCcccccCCCCCcccEEEECCCCC--CcccccccccCC
Q 048785          126 LAKLG--NSHVTATCG-ARNIEFVK----SLGA-DEVLDYKTPDGAALKSPSGRKYDAVIHCARGI--PWSTFEPNLAEN  195 (280)
Q Consensus       126 la~~~--G~~Vi~~~~-~~~~~~~~----~~g~-~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~--~~~~~~~~l~~~  195 (280)
                      +++.+  +.+|++++. ++..+.++    ..|. +.+ .....+  .........||+|+.....+  .+..+.+.|+++
T Consensus       130 la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d--~~~~~~~~~~D~V~~~~~~~~~~l~~~~~~L~pg  206 (277)
T 1o54_A          130 LARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERV-TIKVRD--ISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGG  206 (277)
T ss_dssp             HHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGE-EEECCC--GGGCCSCCSEEEEEECCSCGGGTHHHHHHHEEEE
T ss_pred             HHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCE-EEEECC--HHHcccCCccCEEEECCcCHHHHHHHHHHHcCCC
Confidence            66664  469999994 45555554    3343 111 111111  11112335799999866543  267788899999


Q ss_pred             cEEEEeCC
Q 048785          196 GKVIDLTP  203 (280)
Q Consensus       196 g~~v~~g~  203 (280)
                      |+++....
T Consensus       207 G~l~~~~~  214 (277)
T 1o54_A          207 GRFATVCP  214 (277)
T ss_dssp             EEEEEEES
T ss_pred             CEEEEEeC
Confidence            99887653

>1g31_A GP31; chaperone, CO-chaperonin, groes, in VIVO protein folding, bacteriophage T4; 2.30A {Enterobacteria phage T4} SCOP: b.35.1.1 PDB: 2cgt_O

Probab=89.68  E-value=0.48  Score=31.98  Aligned_cols=23  Identities=17%  Similarity=0.079  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCC--CCCCCCEEEEe
Q 048785           52 AGEIIEVGSEVK--NFKAGYNVVAI   74 (280)
Q Consensus        52 ~G~V~~vG~~v~--~~~~Gd~V~~~   74 (280)
                      -|+|++||+.+.  .+++||+|..-
T Consensus        48 ~g~VvAVG~g~~~~~vKvGD~Vl~~   72 (111)
T 1g31_A           48 LCVVHSVGPDVPEGFCEVGDLTSLP   72 (111)
T ss_dssp             EEEEEEECTTSCTTSCCTTCEEEEE
T ss_pred             eEEEEEECCCCccccccCCCEEEEC
Confidence            699999999875  38999999863

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=85.70  E-value=2  Score=36.35  Aligned_cols=78  Identities=27%  Similarity=0.119  Sum_probs=49.2

Q ss_pred             hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecC----CC-C--CcccccCCC-------------CCcccEEEECCCCC-
Q 048785          126 LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDY----KT-P--DGAALKSPS-------------GRKYDAVIHCARGI-  183 (280)
Q Consensus       126 la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~----~~-~--~~~~~~~~~-------------~~~~d~v~d~~g~~-  183 (280)
                      +++.+|++|++.+. +++.+.++++|++.+-..    .+ .  .....+.++             -.+.|+||.|+..+ 
T Consensus       208 ~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg  287 (405)
T 4dio_A          208 TARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVITTALIPG  287 (405)
T ss_dssp             HHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHHHHHHTCSEEEECCCCSS
T ss_pred             HHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCC
Confidence            78889999999985 478888888887532110    00 0  000000001             13589999997422 


Q ss_pred             ----C--cccccccccCCcEEEEeCC
Q 048785          184 ----P--WSTFEPNLAENGKVIDLTP  203 (280)
Q Consensus       184 ----~--~~~~~~~l~~~g~~v~~g~  203 (280)
                          .  -+.+++.|++++.++.+..
T Consensus       288 ~~ap~Lvt~emv~~Mk~GsVIVDvA~  313 (405)
T 4dio_A          288 RPAPRLVTREMLDSMKPGSVVVDLAV  313 (405)
T ss_dssp             SCCCCCBCHHHHTTSCTTCEEEETTG
T ss_pred             CCCCEEecHHHHhcCCCCCEEEEEeC
Confidence                1  3578889999999999863

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=85.00  E-value=0.65  Score=39.42  Aligned_cols=78  Identities=19%  Similarity=0.194  Sum_probs=49.6

Q ss_pred             hhhhCCCEEEEEec-CCcHHHHHhcCCCeee-cCCCC-----------Ccc-------cccCCCCCcccEEEECCCCC--
Q 048785          126 LAKLGNSHVTATCG-ARNIEFVKSLGADEVL-DYKTP-----------DGA-------ALKSPSGRKYDAVIHCARGI--  183 (280)
Q Consensus       126 la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~-~~~~~-----------~~~-------~~~~~~~~~~d~v~d~~g~~--  183 (280)
                      +++.+|++|+++++ +++.+.++++|++.+. +..+.           +..       .+... -.++|++|+|++.+  
T Consensus       190 ~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~-~~~aDvVI~~~~~pg~  268 (401)
T 1x13_A          190 AANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQ-AKEVDIIVTTALIPGK  268 (401)
T ss_dssp             HHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHH-HHHCSEEEECCCCTTS
T ss_pred             HHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHH-hCCCCEEEECCccCCC
Confidence            77889999999985 4788888889886442 11100           000       01100 12589999996321  


Q ss_pred             ---C-c-ccccccccCCcEEEEeCCC
Q 048785          184 ---P-W-STFEPNLAENGKVIDLTPT  204 (280)
Q Consensus       184 ---~-~-~~~~~~l~~~g~~v~~g~~  204 (280)
                         . + ..+++.|++++.++.++..
T Consensus       269 ~ap~li~~~~l~~mk~g~vIVdva~~  294 (401)
T 1x13_A          269 PAPKLITREMVDSMKAGSVIVDLAAQ  294 (401)
T ss_dssp             CCCCCBCHHHHHTSCTTCEEEETTGG
T ss_pred             CCCeeeCHHHHhcCCCCcEEEEEcCC
Confidence               2 3 3678899999999999843

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=84.89  E-value=0.79  Score=36.18  Aligned_cols=74  Identities=16%  Similarity=0.014  Sum_probs=47.5

Q ss_pred             hhhhC-CCEEEEEec-CCcHHHHHhcCCC-eeecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeC
Q 048785          126 LAKLG-NSHVTATCG-ARNIEFVKSLGAD-EVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLT  202 (280)
Q Consensus       126 la~~~-G~~Vi~~~~-~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g  202 (280)
                      +++.. |.+|++++. +...+.+++.+.. .++..+...   +. ...+.||+|+.......+..+.+.|+++|+++...
T Consensus       103 l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~---~~-~~~~~fD~v~~~~~~~~l~~~~~~L~pgG~l~~~~  178 (269)
T 1p91_A          103 FADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHR---LP-FSDTSMDAIIRIYAPCKAEELARVVKPGGWVITAT  178 (269)
T ss_dssp             HHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTS---CS-BCTTCEEEEEEESCCCCHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhh---CC-CCCCceeEEEEeCChhhHHHHHHhcCCCcEEEEEE
Confidence            55554 679999995 4667777665533 222221111   11 22357999997555555888999999999988765


Q ss_pred             C
Q 048785          203 P  203 (280)
Q Consensus       203 ~  203 (280)
                      +
T Consensus       179 ~  179 (269)
T 1p91_A          179 P  179 (269)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0

Probab=84.71  E-value=0.66  Score=30.42  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=19.2

Q ss_pred             eEEEEEeCCCCC---------CCCCCCEEEEe
Q 048785           52 AGEIIEVGSEVK---------NFKAGYNVVAI   74 (280)
Q Consensus        52 ~G~V~~vG~~v~---------~~~~Gd~V~~~   74 (280)
                      .|+|+++|+...         .+++||+|+.-
T Consensus        37 ~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl~~   68 (95)
T 3nx6_A           37 KGEVVAIGAGKPLDNGSLHAPVVKVGDKVIYG   68 (95)
T ss_dssp             EEEEEEECSCEECTTSCEECCSCCTTCEEEEC
T ss_pred             ccEEEEECCCeECCCCCEEccccCCCCEEEEC
Confidence            799999999753         48999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	280
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	1e-12
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	3e-12
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	6e-12
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	2e-11
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	2e-11
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	7e-10
d1o89a1	146	b.35.1.2 (A:1-115,A:293-323) Hypothetical protein	9e-10
d1yb5a1	150	b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas	3e-08
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	3e-08
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	7e-08
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	8e-08
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	1e-07
d1qora1	147	b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas	5e-07
d1qora2	179	c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher	3e-06
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	3e-06
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	3e-06
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	3e-06
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	1e-05
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	8e-05
d1v3va1	147	b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hyd	3e-04
d1o8ca2	77	c.2.1.1 (A:116-192) Hypothetical protein YhdH {Esc	3e-04
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	5e-04
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	0.001
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	0.001
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	0.002
d1jvba2	170	c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeo	0.003
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	0.003
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	0.003

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 61.8 bits (149), Expect = 1e-12
 Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 8/127 (6%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           + +    + +VL++V  SS+N  D       + P       Y     +    + V S+  
Sbjct: 23  ISMDDLPEGDVLVRVHYSSVNYKDGLA----SIPDGKIVKTYPFVPGIDLAGVVVSSQHP 78

Query: 64  NFKAGYNVVAILNHFSG---GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
            F+ G  V+A          GG +E+A +        P  +       + LA L      
Sbjct: 79  RFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLE-RIAQEISLAELPQALKR 137

Query: 121 TQSAGLA 127
                L 
Sbjct: 138 ILRGELR 144

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 61.6 bits (148), Expect = 3e-12
 Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 25/142 (17%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
            P+P P++DEVLL++    +   D    +         K P +   + +G +++VG  VK
Sbjct: 18  RPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVK 77

Query: 64  NFKAGYNVVAILNHFSGGG-------------------------LAEFAMVKESLTASRP 98
           + K G  V                                    LA + +         P
Sbjct: 78  HLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLP 137

Query: 99  LEVSAAEGAGLPLAGLTALEAL 120
              +  +           ++A 
Sbjct: 138 DNCNVKQLVTHSFKLEQTVDAF 159

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 60.7 bits (146), Expect = 6e-12
 Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 29/154 (18%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKG-----VARPILPRKFPYIPATDVAGEIIEV 58
           + VP P+  +VL+KVEA+ +   D  +++G          L  K P     ++AG+I EV
Sbjct: 18  IGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEV 77

Query: 59  GSEVKNFKAGYNVVAILNHFSG------------------------GGLAEFAMVKESLT 94
           G EV  +  G  V        G                        G  AE+ +V     
Sbjct: 78  GDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKY 137

Query: 95  ASRPLEVSAAEGAGLPLAGLTALEALTQSAGLAK 128
             +   V       + L          ++     
Sbjct: 138 MYKLRRVKPMITKTMKLEEANEAIDNLENFKAIG 171

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 2e-11
 Identities = 31/162 (19%), Positives = 47/162 (29%), Gaps = 32/162 (19%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
            P+P P  +EVLL++ +  +   D    +         K P +   + +G + +VGS VK
Sbjct: 24  YPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK 83

Query: 64  NFKAGYNVVAILNHFSG-------------------------GGLAEFAMVKESLTASRP 98
           + K G  V                                  G L  F     +     P
Sbjct: 84  HLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLP 143

Query: 99  LEVSAAEGAGLPLA-GLTALEALTQSAGLAKLGNSHVTATCG 139
             V        PL   L A E   +  G        +   C 
Sbjct: 144 DNVKPLVTHRFPLEKALEAFETFKKGLG------LKIMLKCD 179

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 59.2 bits (142), Expect = 2e-11
 Identities = 31/142 (21%), Positives = 47/142 (33%), Gaps = 27/142 (19%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           V VP P   +VL+K+EAS +   D    +G     +    P+IP  +  G +  VGS V 
Sbjct: 23  VKVPLPGPGQVLVKIEASGVCHTDLHAAEG--DWPVKPPLPFIPGHEGVGYVAAVGSGVT 80

Query: 64  NFKAGYNVVAILNHFSGGG-------------------------LAEFAMVKESLTASRP 98
             K G  V     + + G                           AE+ +   +     P
Sbjct: 81  RVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGILP 140

Query: 99  LEVSAAEGAGLPLAGLTALEAL 120
             V A    G        L+ +
Sbjct: 141 KNVKATIHPGKLDDINQILDQM 162

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 54.1 bits (129), Expect = 7e-10
 Identities = 30/127 (23%), Positives = 39/127 (30%), Gaps = 16/127 (12%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
           V +P P   + EV+L+VEA  LN  D  ++ G     L   F                 E
Sbjct: 16  VDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPG-------------ME 62

Query: 62  VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT 121
           V     G    A++     GGLAE   V +      P                 A  AL 
Sbjct: 63  VVGVVEGRRYAALVPQ---GGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALL 119

Query: 122 QSAGLAK 128
                 K
Sbjct: 120 DRGHTGK 126

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 146

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 53.7 bits (128), Expect = 9e-10
 Identities = 35/129 (27%), Positives = 48/129 (37%), Gaps = 7/129 (5%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           +      + +V + V  SSLN  D     G  +  + R FP IP  D AG +    SE  
Sbjct: 20  LDESRLPEGDVTVDVHWSSLNYKDALAITG--KGKIIRNFPMIPGIDFAGTVRT--SEDP 75

Query: 64  NFKAGYNVVAI---LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
            F AG  V+     +     GGLAE A VK     + P   +A E +             
Sbjct: 76  RFHAGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAIIN 135

Query: 121 TQSAGLAKL 129
            Q  G   +
Sbjct: 136 NQIQGRTLV 144

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 3e-08
 Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 4/127 (3%)

Query: 1   HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGS 60
              + VP P+  +VL+KV A  +N  +  I+ G          PY P +DVAG I  VG 
Sbjct: 20  RSDIAVPIPKDHQVLIKVHACGVNPVETYIRSG--TYSRKPLLPYTPGSDVAGVIEAVGD 77

Query: 61  EVKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
               FK G  V         GG AE+A+  +      P ++    G+  PL  +      
Sbjct: 78  NASAFKKGDRVFTSSTIS--GGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHEN 135

Query: 121 TQSAGLA 127
                 A
Sbjct: 136 IIHGSGA 142

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 3e-08
 Identities = 27/162 (16%), Positives = 45/162 (27%), Gaps = 48/162 (29%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           + V  P+  EV +K+ A+++   D     G          P I     AG +  VG  V 
Sbjct: 24  IEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF---PVILGHLGAGIVESVGEGVT 80

Query: 64  NFKAGYNVVA---------------------------------------------ILNHF 78
             KAG  V+                                              IL++ 
Sbjct: 81  KLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYM 140

Query: 79  SGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
                +E+ +V +   A     +   E     L+     +A 
Sbjct: 141 GTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAF 182

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 49.5 bits (117), Expect = 7e-08
 Identities = 23/174 (13%), Positives = 46/174 (26%), Gaps = 49/174 (28%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
           + V  P  +E+ +K+ A+ +   D               FP +   + AG +  VG  V 
Sbjct: 26  IEVDVPHANEIRIKIIATGVCHTDLYHLF---EGKHKDGFPVVLGHEGAGIVESVGPGVT 82

Query: 64  NFKAGYNVVA---------------------------------------------ILNHF 78
            F+ G  V+                                              +L   
Sbjct: 83  EFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFL 142

Query: 79  SGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAGLAKLGNS 132
                +++ +V +   A     V   E     +   +  +A+       K   +
Sbjct: 143 GTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDL-MKHGKCIRT 195

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 48.7 bits (115), Expect = 8e-08
 Identities = 19/118 (16%), Positives = 31/118 (26%), Gaps = 3/118 (2%)

Query: 4   VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDV-AGEIIEVGSEV 62
           +      KD VL+KV  S +N  D    K     +                   +     
Sbjct: 23  ISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPRFAE 82

Query: 63  KNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL 120
            +     +    ++   G    E+A V        P  +S  E     L  +   E  
Sbjct: 83  GDEVIATSYELGVSRDGGLS--EYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVS 138

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 31/189 (16%), Positives = 51/189 (26%), Gaps = 43/189 (22%)

Query: 101 VSAAEGAGLPLAGLTALEALTQSAGL-----------------------AKLGNSHVTAT 137
           ++  +GA + +  LTA   LT    L                        KL N +  + 
Sbjct: 1   LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISV 60

Query: 138 CGARNIEFVK-----SLGADEVLDYKTPD-------GAALKSPSGRKYDAVIHCARGIPW 185
              R            LGA +V+     +              SG +    ++C  G   
Sbjct: 61  IRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSS 120

Query: 186 STFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIP--------KGENLVF 237
           +     L  NG ++         +T       F         V          K   L  
Sbjct: 121 TGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQ 180

Query: 238 LVKLLKEGK 246
           ++   +EGK
Sbjct: 181 IIAWYEEGK 189

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 46.2 bits (108), Expect = 5e-07
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
           V      P ++E+ ++ +A  +N  D  I+ G+     P   P    T+ AG + +VGS 
Sbjct: 18  VEFTPADPAENEIQVENKAIGINFIDTYIRSGLYP---PPSLPSGLGTEAAGIVSKVGSG 74

Query: 62  VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT 121
           VK+ KAG  VV   +           +  ++      ++V  AE    PL        + 
Sbjct: 75  VKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEIL 134

Query: 122 QSA 124
           +S 
Sbjct: 135 ESR 137

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 29/178 (16%), Positives = 52/178 (29%), Gaps = 33/178 (18%)

Query: 101 VSAAEGAGLPLAGLTALEALTQSAGL----------------------AKLGNSHVTATC 138
           +S  + A   L GLT    L ++  +                      AK   + +  T 
Sbjct: 1   ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTV 60

Query: 139 GAR-NIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAEN 195
           G     +     GA +V++Y+  D      +   G+K   V        W      L   
Sbjct: 61  GTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRR 120

Query: 196 GKVIDLTPTPSAMLTFAWQK------LTFSKKQLVPLLVIPK--GENLVFLVKLLKEG 245
           G ++    +  A+             L  ++  L   +   +   E    L  L+  G
Sbjct: 121 GLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASG 178

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 4  VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
          + V  P+  EV ++V A+ +   D        + +    FP +   + AG +  VG  V 
Sbjct: 26 IEVSPPKACEVRIQVIATCVCPTDINATDPKKKAL----FPVVLGHECAGIVESVGPGVT 81

Query: 64 NFKAGYNVVA 73
          NFK G  V+ 
Sbjct: 82 NFKPGDKVIP 91

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 4  VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
          + V  P+  EV +K+ AS +   D  +     + I+P KFP I   +  G +  +G+ V 
Sbjct: 26 ITVAPPKAHEVRIKILASGICGSDSSV----LKEIIPSKFPVILGHEAVGVVESIGAGVT 81

Query: 64 NFKAGYNVV 72
            K G  V+
Sbjct: 82 CVKPGDKVI 90

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 4  VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
          + +  P+ DEVL+KV A+ +   D  ++       LP    +  +      I  +G  V 
Sbjct: 21 LKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPLPAVLGHEGSG----IIEAIGPNVT 76

Query: 64 NFKAGYNVVAILNHF 78
            + G +VV    + 
Sbjct: 77 ELQVGDHVVLSYGYC 91

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 4  VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
          V  PT    EVL++++A  +   D     G     +  K P IP  +  G + EVG  V 
Sbjct: 18 VEKPTISYGEVLVRIKACGVCHTDLHAAHG--DWPVKPKLPLIPGHEGVGIVEEVGPGVT 75

Query: 64 NFKAGYNVVAILNHFSGG 81
          + K G  V     + + G
Sbjct: 76 HLKVGDRVGIPWLYSACG 93

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 40.2 bits (93), Expect = 8e-05
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 4  VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
          V V  P+  EV +K+ A+ +   D  +  G          P I   + AG +  +G  V 
Sbjct: 26 VEVAPPKAHEVRIKMVATGICRSDDHVVSGTL----VTPLPVIAGHEAAGIVESIGEGVT 81

Query: 64 NFKAGYNVVAILNHF 78
            + G  V+ +    
Sbjct: 82 TVRPGDKVIPLFTPQ 96

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 10/115 (8%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
             V +P  +  EVLL+    S++ +     K +           +           V S+
Sbjct: 25  KTVELPPLKNGEVLLEALFLSVDPYMRIASKRLKEG------AVMMG---QQVARVVESK 75

Query: 62  VKNFKAGYNVVAILNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTA 116
              F AG  V+A     +   +++   +++ LT     ++   E        + A
Sbjct: 76  NSAFPAGSIVLAQSGW-TTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPA 129

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 77

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 26/76 (34%)

Query: 102 SAAEGAGLPLAGLTALEAL-------------------------TQSAGLAKLGNSHVTA 136
            A +   +  AG TA+  +                         + +  L       V A
Sbjct: 2   DARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVA 61

Query: 137 TCG-ARNIEFVKSLGA 151
             G     E++KSLGA
Sbjct: 62  VSGRESTHEYLKSLGA 77

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 36/179 (20%), Positives = 61/179 (34%), Gaps = 33/179 (18%)

Query: 105 EGAGLPLAGLTALEALTQSAGLAK-----------------------LGNSHVTATCGAR 141
           E A   +A LTA  +L +   L+                        +G    T      
Sbjct: 2   EAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA 61

Query: 142 NIEFVKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVI 199
             E +  LG + V D ++ D     L+   G   D V++   G         LA  G+ I
Sbjct: 62  KREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFI 121

Query: 200 -----DLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPK---GENLVFLVKLLKEGKIKTL 250
                D+    S  L    +  +FS   L   L +      + L  +++ + +GK++ L
Sbjct: 122 ELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVL 180

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 2  VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
          +    P     + +++  A S    D           L  +   I   +  GE++EVGSE
Sbjct: 15 IEKERPVAGSYDAIVRPLAVSPCTSDIHTVF---EGALGDRKNMILGHEAVGEVVEVGSE 71

Query: 62 VKNFKAGYNVVAILNHF 78
          VK+FK G  V+      
Sbjct: 72 VKDFKPGDRVIVPCTTP 88

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 2   VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
                      ++ +K+EA  +   D     G        K P +   ++ G+++++G +
Sbjct: 24  TKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGH---WGNMKMPLVVGHEIVGKVVKLGPK 80

Query: 62  -VKNFKAGYNVVAILNHFSGG 81
                K G  V      FS  
Sbjct: 81  SNSGLKVGQRVGVGAQVFSCL 101

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 4  VPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK 63
            +    +  +L+++ ++ +   D  +             P I   + AG ++EV  E +
Sbjct: 22 FEISDIPRGSILVEILSAGVCGSDVHM---FRGEDPRVPLPIILGHEGAGRVVEVNGEKR 78

Query: 64 NF 65
          + 
Sbjct: 79 DL 80

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 28/171 (16%)

Query: 102 SAAEGAGLPLAGLTALEALTQSAGLAKLGNSHVTATCGARNIEF---------------- 145
           +A E A L  +G+T   A+ + A L       V    G                      
Sbjct: 2   NAVEAAPLTCSGITTYRAVRK-ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVD 60

Query: 146 --------VKSLGADEVLDYKTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAEN 195
                    K  GAD V++    D      +    +  DAVI         +  P     
Sbjct: 61  VREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAK 120

Query: 196 GKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGK 246
                +     A L +    +T S+ Q V  LV  + +  + +++L + GK
Sbjct: 121 QGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSD-FLGIMRLAEAGK 170

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 2  VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSE 61
          + +    P  ++V +++    +   D      V        +P +P  ++ G ++ VG +
Sbjct: 16 MDITRREPGPNDVKIEIAYCGVCHSDLHQ---VRSEWAGTVYPCVPGHEIVGRVVAVGDQ 72

Query: 62 VKNFKAGYNVV 72
          V+ +  G  V 
Sbjct: 73 VEKYAPGDLVG 83

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 28/171 (16%)

Query: 100 EVSAAEGAGLPLAGLTALEALTQSAGLAKLGNSHVTATCGARNI---------------- 143
           +   A  A L  AG+T    L             V    G  ++                
Sbjct: 3   QEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFT 61

Query: 144 ------EFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCA-RGIPWSTFEPNLAENG 196
                 E  K+LGADEV++ +  D  A      + +D +++          F   L  +G
Sbjct: 62  TSEAKREAAKALGADEVVNSRNADEMAAH---LKSFDFILNTVAAPHNLDDFTTLLKRDG 118

Query: 197 KVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGKI 247
            +  +    +   +     L   ++ +   ++    E    ++    E  I
Sbjct: 119 TMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPE-TQEMLDFCAEHGI 168

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	280
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.95
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.95
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.94
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.93
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.93
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.93
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.93
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.93
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.92
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.92
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.92
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.92
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.91
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.91
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.9
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.9
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.9
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.9
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.89
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.88
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.87
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.87
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.87
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.86
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.8
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.8
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.78
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.77
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.77
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.76
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.75
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.75
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.75
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.74
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.73
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.73
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.72
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.72
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.7
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.69
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.69
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.69
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.69
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.68
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.67
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.67
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.65
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.65
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.62
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.61
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.6
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.51
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.51
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.49
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	98.54
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	87.12
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	84.87
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	83.69
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	80.35

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.95  E-value=2.9e-28  Score=184.90  Aligned_cols=121  Identities=20%  Similarity=0.269  Sum_probs=107.6

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-----   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----   75 (280)
                      ++|+|.|+|+++|||||+.+++||++|++.+++.........+|+++|||++|+|+++|+++++|++||+|+...     
T Consensus        15 ~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~~GdrV~~~~~~~~~   94 (178)
T d1e3ja1          15 LEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCR   94 (178)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECCEECCS
T ss_pred             EEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCCCCCEEEECcccccC
Confidence            478999999999999999999999999999887665444557889999999999999999999999999997631     


Q ss_pred             --------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHH
Q 048785           76 --------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT  121 (280)
Q Consensus        76 --------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  121 (280)
                                          ....+|+|+||+++|+++++++|++++++++|+++..+.|||+++.
T Consensus        95 ~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~a~~  160 (178)
T d1e3ja1          95 RCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDAFE  160 (178)
T ss_dssp             SSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCCCGGGEEEEEEGGGHHHHHH
T ss_pred             CccccccCCccccccccceeccccccccceeeeecccceeeCCCCCCHHHHHHHHhHHHHHHHHHH
Confidence                                1235699999999999999999999999999999888889999984

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.3e-28  Score=178.94  Aligned_cols=117  Identities=29%  Similarity=0.482  Sum_probs=106.4

Q ss_pred             CCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCCCc
Q 048785            3 HVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSGGG   82 (280)
Q Consensus         3 ~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~   82 (280)
                      |+|.|.|+++||+||+.+++||++|+..+.|....  ...+|.++|||++|+|+++|+++++|++||||++...  .+|+
T Consensus        22 ~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~i~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~--~~G~   97 (150)
T d1yb5a1          22 DIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSR--KPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFTSST--ISGG   97 (150)
T ss_dssp             EEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSC--CCCSSBCCCSCEEEEEEEECTTCTTCCTTCEEEESCC--SSCS
T ss_pred             ecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCc--cccccccCccceeeeeEeecceeeccccCcccccccc--cccc
Confidence            57889999999999999999999999999987753  3367889999999999999999999999999987643  6799


Q ss_pred             ceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhh
Q 048785           83 LAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQS  123 (280)
Q Consensus        83 ~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~  123 (280)
                      |+||+.+|++.++++|+++++++||+++++++|+|+++...
T Consensus        98 ~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~  138 (150)
T d1yb5a1          98 YAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIH  138 (150)
T ss_dssp             SBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHH
T ss_pred             ccccccccccccccccCCCCHHHHHHhhhhhhhehhhheEE
Confidence            99999999999999999999999999999999999988554

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.94  E-value=3.3e-27  Score=177.46  Aligned_cols=121  Identities=21%  Similarity=0.257  Sum_probs=106.4

Q ss_pred             CCCCCCCCC-CCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee----
Q 048785            1 HVHVPVPTP-RKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL----   75 (280)
Q Consensus         1 ~~~~~~~~~-~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~----   75 (280)
                      ++|++.|++ +++|||||+.+++||++|+++++|..+......+|+++|||++|+|+++|++++++++||||++..    
T Consensus        14 i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~c   93 (171)
T d1h2ba1          14 IEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTD   93 (171)
T ss_dssp             EECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCBCC
T ss_pred             EEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCCCCCEEEEcCccCC
Confidence            468899985 689999999999999999999988765433447899999999999999999999999999998742    


Q ss_pred             --------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHH
Q 048785           76 --------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT  121 (280)
Q Consensus        76 --------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  121 (280)
                                          +...+|+|+||+.+|.+.++++|++++++.+++++.++.|||+++.
T Consensus        94 g~~~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~~~ta~~al~  159 (171)
T d1h2ba1          94 GTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERLE  159 (171)
T ss_dssp             SCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCCCEEEEEGGGHHHHHHHHH
T ss_pred             CCcccccccccccccccccceeecccccceeeeehhhcceecCCCCCHHHHHHHHhHHHHHHHHHH
Confidence                                1245699999999999999999999999989988889999999994

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=4e-26  Score=167.37  Aligned_cols=117  Identities=24%  Similarity=0.318  Sum_probs=101.0

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCC
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSG   80 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   80 (280)
                      ++|+|.|.|+++||+||+.|++||++|+.+++|..+.   ..+|.++|||++|+|+++|+++++|++||||+....  ..
T Consensus        17 ~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~---~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~--~~   91 (147)
T d1qora1          17 AVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPP---PSLPSGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQS--AL   91 (147)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC---SSSSBCCCSCEEEEEEEECTTCCSCCTTCEEEESCC--SS
T ss_pred             EEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCC---Ccceeeeccccccceeeeeeecccccccceeeeecc--cc
Confidence            3588999999999999999999999999999998752   368899999999999999999999999999986443  57


Q ss_pred             CcceeEEeecccccccCCCCCChhhh--cccchhHHHHHHHHHh
Q 048785           81 GGLAEFAMVKESLTASRPLEVSAAEG--AGLPLAGLTALEALTQ  122 (280)
Q Consensus        81 g~~~~~~~v~~~~~~~~p~~~~~~~a--a~~~~~~~~a~~~l~~  122 (280)
                      |+|+||+.++.+.++++|++++++++  ++++....++++++.+
T Consensus        92 G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~~  135 (147)
T d1qora1          92 GAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILE  135 (147)
T ss_dssp             CCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHHH
T ss_pred             ccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987644  4556776777777643

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=5.7e-26  Score=171.70  Aligned_cols=119  Identities=27%  Similarity=0.324  Sum_probs=104.9

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe------
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI------   74 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~------   74 (280)
                      ++|+|.|.|+++||+||+.+++||++|++.++|..+.  ...+|.++|||++|+|+++|++++++++||||+..      
T Consensus        20 l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~--~~~~P~i~GhE~~G~V~~~G~~v~~~~~GdrV~~~~~~~~~   97 (175)
T d1llua1          20 IEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPV--KPPLPFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTAC   97 (175)
T ss_dssp             EEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSS--CCCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECC
T ss_pred             EEEeECCCCCCCEEEEEEEEecCcccchhhhccCccc--cccCCcCCCCcceEEEEEeCCCccccccCCEEEeccccccC
Confidence            3678999999999999999999999999999998752  24688999999999999999999999999999753      


Q ss_pred             -------------------ecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHH
Q 048785           75 -------------------LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT  121 (280)
Q Consensus        75 -------------------~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  121 (280)
                                         .+...+|+|+||+.+|+++++++|++++++.++++..++.|+++++.
T Consensus        98 g~~~~~~~g~~~~~~~~~~~G~~~~gg~aey~~v~~~~~~~iPd~l~~~~a~~~~~~~~t~~~~~~  163 (175)
T d1llua1          98 GCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQMR  163 (175)
T ss_dssp             SSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTCCCCEEEECGGGHHHHHHHHH
T ss_pred             CccccccCCcccccccccccccccccccceEEEechHHEEECCCCCChhHHHHHHhHHHHHHHHHH
Confidence                               12245689999999999999999999999988888888888888773

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.4e-26  Score=173.07  Aligned_cols=135  Identities=24%  Similarity=0.299  Sum_probs=109.3

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-----   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----   75 (280)
                      ++|+|.|+|+++||+||+.+++||++|++++++.........+|+++|||++|+|+++|++++++++||||+...     
T Consensus        21 l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg  100 (185)
T d1pl8a1          21 LENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRE  100 (185)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSCCTTCEEEECSEECSS
T ss_pred             EEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceeeecccccceecceeccc
Confidence            468999999999999999999999999999886543333447889999999999999999999999999998631     


Q ss_pred             --------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhhhhhhhCCCEEE
Q 048785           76 --------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSAGLAKLGNSHVT  135 (280)
Q Consensus        76 --------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~~la~~~G~~Vi  135 (280)
                                          ....+|+|+||++++.++++++|++++++++++++++  +|++++. .  +....|-+|+
T Consensus       101 ~c~~c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~~lP~~~~~~~aa~~pl~--~a~~a~~-~--~~~~~G~~Vl  175 (185)
T d1pl8a1         101 NDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFPLE--KALEAFE-T--FKKGLGLKIM  175 (185)
T ss_dssp             CCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCGGGEEEEEEGG--GHHHHHH-H--HHTTCCSEEE
T ss_pred             cchhhccchhchhccceeeecccccccceEEEEEchHHEEECCCCCCHHHHHHHHHH--HHHHHHH-H--hCCCCCCEEE
Confidence                                1235688999999999999999999999999887754  4555552 2  1223577777


Q ss_pred             EEecC
Q 048785          136 ATCGA  140 (280)
Q Consensus       136 ~~~~~  140 (280)
                      ..+.+
T Consensus       176 Ig~GP  180 (185)
T d1pl8a1         176 LKCDP  180 (185)
T ss_dssp             EECCT
T ss_pred             EEeCC
Confidence            77765

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=4.9e-26  Score=162.63  Aligned_cols=108  Identities=28%  Similarity=0.346  Sum_probs=97.8

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCC
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSG   80 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   80 (280)
                      ++|+|.|.|+++||+||++++|||++|+...+|..+.  ...+|+++|||++|+|           +||+|+++.   .+
T Consensus        15 ~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~--~~~~P~v~G~E~~G~V-----------vGd~V~~~~---~~   78 (131)
T d1iz0a1          15 LVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLT--RLHPPFIPGMEVVGVV-----------EGRRYAALV---PQ   78 (131)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS--CCCSSBCCCCEEEEEE-----------TTEEEEEEC---SS
T ss_pred             EEEccCCCCCCCEEEEEEEEEeccccccccccccccc--cccceeEeeeeeEEee-----------ccceEEEEe---cc
Confidence            4688999999999999999999999999999998653  3368999999999999           399999876   67


Q ss_pred             CcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhh
Q 048785           81 GGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA  124 (280)
Q Consensus        81 g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~  124 (280)
                      |+|+||+.++++.++++|+++++++||++++++.|||++|.+.+
T Consensus        79 G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g  122 (131)
T d1iz0a1          79 GGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG  122 (131)
T ss_dssp             CCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTT
T ss_pred             CccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999996654

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.93  E-value=5.6e-26  Score=174.88  Aligned_cols=120  Identities=18%  Similarity=0.216  Sum_probs=106.0

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC---
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH---   77 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~---   77 (280)
                      ++|++.|+|+++||+||+.++|||++|++.+.|...   +..+|.++|||++|+|+++|++++++++||||++....   
T Consensus        23 i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~---~~~~p~i~GhE~~G~v~~vG~~v~~~~~GdrV~~~~~~~cg   99 (199)
T d1cdoa1          23 IEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKH---KDGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCG   99 (199)
T ss_dssp             EEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCC---TTSCSEECCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCS
T ss_pred             EEEEECCCCCCCEEEEEEEEEEEecchhhhhhhccc---ccccccccccccceEEEEEcCCCceecCCCEEEEeeecccc
Confidence            468899999999999999999999999999988764   34788999999999999999999999999999874110   


Q ss_pred             ------------------------------------------CCCCcceeEEeecccccccCCCCCChhhhcccchhHHH
Q 048785           78 ------------------------------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLT  115 (280)
Q Consensus        78 ------------------------------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~  115 (280)
                                                                ...|+|+||+++|.+.++++|++++++++|++.+++.|
T Consensus       100 ~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~iP~~~~~~~aa~l~~~l~t  179 (199)
T d1cdoa1         100 ECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLES  179 (199)
T ss_dssp             SSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGG
T ss_pred             ccccccCCCcccccccccccccccccCcccceeeccceeecccccCCceEEEEEchHHEEECCCCCCHHHHHHHHHHHHH
Confidence                                                      01489999999999999999999999999999988889


Q ss_pred             HHHHHHhh
Q 048785          116 ALEALTQS  123 (280)
Q Consensus       116 a~~~l~~~  123 (280)
                      ++.++...
T Consensus       180 ~~~av~~~  187 (199)
T d1cdoa1         180 VNDAIDLM  187 (199)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999543

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.8e-25  Score=170.35  Aligned_cols=116  Identities=18%  Similarity=0.231  Sum_probs=97.9

Q ss_pred             CCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCC-CCCCCCCEEEEee------
Q 048785            3 HVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEV-KNFKAGYNVVAIL------   75 (280)
Q Consensus         3 ~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v-~~~~~Gd~V~~~~------   75 (280)
                      +++.++++++||+||+.++|||++|++.+.|..+.   ..+|+++|||++|+|+++|+++ +.+++||||....      
T Consensus        25 ~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~---~~~P~i~GHE~~G~Vv~vG~~v~~~~k~GdrV~~~~~~~~c~  101 (192)
T d1piwa1          25 KYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN---MKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCL  101 (192)
T ss_dssp             EECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSC---CCSSEECCCCEEEEEEEECTTCCSSCCTTCEEEECSEEECCS
T ss_pred             eccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCC---CCCCcCcccccccchhhcccccccccCCCCeeeEeeeccCCC
Confidence            44556689999999999999999999999988652   4789999999999999999998 5699999996421      


Q ss_pred             --------------------------cCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHH
Q 048785           76 --------------------------NHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT  121 (280)
Q Consensus        76 --------------------------~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  121 (280)
                                                +...+|+|+||+++|++.++++|+++++++|+.+..+..|||+++.
T Consensus       102 ~c~~c~~g~~~~C~~~~~~~~~~~~~G~~~~Ggfaey~~v~~~~~~~iP~~l~~e~Aal~~~~~~ta~~~l~  173 (192)
T d1piwa1         102 ECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERME  173 (192)
T ss_dssp             CSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTCCEEEEESSHHHHHHHHHHHH
T ss_pred             CchhhhcCCcccccccccccccccccccccccceeeEEEeehHHeEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                                      2235699999999999999999999999887666555679999884

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.92  E-value=2e-25  Score=170.69  Aligned_cols=129  Identities=19%  Similarity=0.205  Sum_probs=108.4

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC---
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH---   77 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~---   77 (280)
                      ++++|.|+|+++|||||+.+++||++|++++.|..+    .++|+++|||++|+|+++|+++++|++||||+.....   
T Consensus        18 l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~----~~~P~i~GHE~~G~V~~vG~~v~~~~vGDrVv~~~~~Cg~   93 (194)
T d1f8fa1          18 LQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP----VPLPAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGK   93 (194)
T ss_dssp             EEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC----CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECCCCCSS
T ss_pred             EEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhccc----ccCCcccccceEEEeeecCccceeEccCceeeeecccccC
Confidence            468899999999999999999999999999998865    3789999999999999999999999999999653110   


Q ss_pred             -------------------------------------------CCCCcceeEEeecccccccCCCCCChhhhcccchhHH
Q 048785           78 -------------------------------------------FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGL  114 (280)
Q Consensus        78 -------------------------------------------~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~  114 (280)
                                                                 ...|+|+||..++..+++++|+++++++++.+...+.
T Consensus        94 C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip~~i~~~~~~~i~g~g~  173 (194)
T d1f8fa1          94 CTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDE  173 (194)
T ss_dssp             SHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECTTCCGGGGEEEEEGGG
T ss_pred             ChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEECCCCCCcccEEEEeCcHH
Confidence                                                       0137899999999999999999999999998866665


Q ss_pred             HHHHHHHhhhhhhhhCCC-EEEEE
Q 048785          115 TALEALTQSAGLAKLGNS-HVTAT  137 (280)
Q Consensus       115 ~a~~~l~~~~~la~~~G~-~Vi~~  137 (280)
                      +.+.++    ++++.+|+ +|+++
T Consensus       174 ~g~~ai----q~a~~~g~~~iiaV  193 (194)
T d1f8fa1         174 INQAAI----DSRKGITLKPIIKI  193 (194)
T ss_dssp             HHHHHH----HHHHTSCSEEEEEC
T ss_pred             HHHHHH----HHHHHcCCCEEEEe
Confidence            666666    36777887 55554

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.92  E-value=1.7e-25  Score=171.64  Aligned_cols=118  Identities=22%  Similarity=0.212  Sum_probs=104.7

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN----   76 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~----   76 (280)
                      ++|+|.|+|+++|||||+.++|||++|+++++|...   ...+|+++|||++|+|+++|++|+.+++||+|+....    
T Consensus        21 i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~---~~~~p~v~GhE~~G~V~~vG~~V~~~~~GdrV~v~~~~~cg   97 (197)
T d2fzwa1          21 IEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADP---EGCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCG   97 (197)
T ss_dssp             EEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCT---TCCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCS
T ss_pred             EEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcc---cccccccCCcceeeEEEeecCCceecCCCCEEEEccccccc
Confidence            368899999999999999999999999999999764   2478999999999999999999999999999986310    


Q ss_pred             -----------------------------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHH
Q 048785           77 -----------------------------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLT  115 (280)
Q Consensus        77 -----------------------------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~  115 (280)
                                                               ....|+|+||+++|+.+++++|++++++++|++++++.|
T Consensus        98 ~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp~~l~~~~aa~~~~~~~t  177 (197)
T d2fzwa1          98 ECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDE  177 (197)
T ss_dssp             CSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTSCSGGGEEEEEEGGG
T ss_pred             cccccccCccccCccccccccccccCCccceeccCCcceecccccccceeEEEechHHEEECCCCCCHHHHhhhhhHHHH
Confidence                                                     011389999999999999999999999999999999989


Q ss_pred             HHHHHH
Q 048785          116 ALEALT  121 (280)
Q Consensus       116 a~~~l~  121 (280)
                      ++.++.
T Consensus       178 ~~~a~~  183 (197)
T d2fzwa1         178 INKAFE  183 (197)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999884

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.92  E-value=2e-25  Score=172.43  Aligned_cols=117  Identities=21%  Similarity=0.265  Sum_probs=102.5

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN----   76 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~----   76 (280)
                      ++|+|.|.|+++|||||+.++|||++|+++++|..+    ..+|.++|||++|+|+++|++|+++++||+|++...    
T Consensus        23 i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~----~~~P~v~GHE~~G~V~~vG~~V~~~~~GdrV~~~~~~~c~   98 (202)
T d1e3ia1          23 IEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKK----ALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCK   98 (202)
T ss_dssp             EEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSC----CCSSBCCCCEEEEEEEEECTTCCSCCTTCEEEECSSCCCS
T ss_pred             EEEEECCCCCCCEEEEEEEEEEEeccccceeeeecc----cccccccccccceEEeeecCCceeccCCCEEEEEeecccc
Confidence            468899999999999999999999999999998775    367899999999999999999999999999987410    


Q ss_pred             ---------------------------------------------CCCCCcceeEEeecccccccCCCCCChhhhcccch
Q 048785           77 ---------------------------------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPL  111 (280)
Q Consensus        77 ---------------------------------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~  111 (280)
                                                                   ....|+|+||+++|+..++++|++++++.++++.+
T Consensus        99 ~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~~l~~lP~~~~~~~~~~~~~  178 (202)
T d1e3ia1          99 RCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHAL  178 (202)
T ss_dssp             SSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTSCGGGGEEEEE
T ss_pred             ccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehhhEEECCCCCCHHHHHHHHH
Confidence                                                         01138999999999999999999999998888888


Q ss_pred             hHHHHHHHHH
Q 048785          112 AGLTALEALT  121 (280)
Q Consensus       112 ~~~~a~~~l~  121 (280)
                      ++.+++.++.
T Consensus       179 ~~~~~~~a~~  188 (202)
T d1e3ia1         179 PFESINDAID  188 (202)
T ss_dssp             EGGGHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7778877773

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=7.2e-25  Score=159.72  Aligned_cols=116  Identities=27%  Similarity=0.224  Sum_probs=101.9

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec---CC
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN---HF   78 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~---~~   78 (280)
                      ++++.|+++++||+|||.|+|||++|++...|..+.  ...+|+++|+|++|+|+++|.  +.+++||+|+....   ..
T Consensus        18 ~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~--~~~~p~v~G~e~~G~V~~~~~--~~~~~g~~v~~~~~~~g~~   93 (146)
T d1o89a1          18 QTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKI--IRNFPMIPGIDFAGTVRTSED--PRFHAGQEVLLTGWGVGEN   93 (146)
T ss_dssp             EECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSC--CCSSSBCCCSEEEEEEEEECS--TTCCTTCEEEEECTTBTTT
T ss_pred             EEcCCCCCCCCEEEEEEeeccCccceeeEEEeeccc--ccccceeccccccccceeecc--CCccceeeEEeecccceec
Confidence            588999999999999999999999999999997652  246789999999999999766  46999999987533   34


Q ss_pred             CCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHH
Q 048785           79 SGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT  121 (280)
Q Consensus        79 ~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  121 (280)
                      .+|+|+||+++|++.++++|+++|+++||++++++.||+..+.
T Consensus        94 ~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~~~~  136 (146)
T d1o89a1          94 HWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAIINN  136 (146)
T ss_dssp             BCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHHHTT
T ss_pred             CCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999989877663

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.91  E-value=1.5e-24  Score=163.29  Aligned_cols=116  Identities=22%  Similarity=0.235  Sum_probs=96.2

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe------
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI------   74 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~------   74 (280)
                      ++|+|.|.|+++|||||+.++|||++|+.++++....  ...+|.++|||++|+|+++|++++.+++||||+..      
T Consensus        15 i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~--~~~~p~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~~~~~   92 (171)
T d1rjwa1          15 IKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPV--KPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSAC   92 (171)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS--CCCSSBCCCSCEEEEEEEECTTCCSCCTTCEEEECSEEECC
T ss_pred             EEEeECCCCCCCeEEEEEEEeeccccceeeeeccccc--ccccccccCCEEEEEEEEecccccCceeeeEEeeccccccc
Confidence            4689999999999999999999999999988866442  34788999999999999999999999999999752      


Q ss_pred             -------------------ecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHH
Q 048785           75 -------------------LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL  120 (280)
Q Consensus        75 -------------------~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l  120 (280)
                                         .+...+|+|+||+++|+++++++|++++++.|++ .. ..++++.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~A~l-~~-~~~~~~~~  155 (171)
T d1rjwa1          93 GHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQPL-EK-INEVFDRM  155 (171)
T ss_dssp             SCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTCCEEEEEG-GG-HHHHHHHH
T ss_pred             cccccccCCCccccccccccceeccCccccceEecHHHEEECCCCCCHHHHHH-HH-HHHHHHHH
Confidence                               1224569999999999999999999999866554 32 23566555

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.90  E-value=2.1e-24  Score=162.25  Aligned_cols=109  Identities=24%  Similarity=0.274  Sum_probs=92.2

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe------
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI------   74 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~------   74 (280)
                      ++|+|.|.|+++||+||+.++|||++|++.+.+...   ...+|+++|||++|+|+++|+++++|++||||+..      
T Consensus        14 i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~---~~~~P~i~GhE~~G~V~~vG~~v~~~~vGdrV~v~~~~~cg   90 (177)
T d1jqba1          14 WIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGAL---GDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDW   90 (177)
T ss_dssp             EEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTT---CCCSSEECCCCEEEEEEEECTTCCSCCTTCEEEECSCCCCS
T ss_pred             EEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCC---CCCCCccCcceeeEEeeecccccceecCCCcEEEeeeeccc
Confidence            468899999999999999999999999987765443   23779999999999999999999999999999853      


Q ss_pred             ---------------------ecCCCCCcceeEEeecc--cccccCCCCCChhhhcccchh
Q 048785           75 ---------------------LNHFSGGGLAEFAMVKE--SLTASRPLEVSAAEGAGLPLA  112 (280)
Q Consensus        75 ---------------------~~~~~~g~~~~~~~v~~--~~~~~~p~~~~~~~aa~~~~~  112 (280)
                                           .+...+|+|+||+++|.  .+++++|+++++++++...+.
T Consensus        91 ~c~~C~~g~~~~c~~~~~~~~~g~~~~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~~~~~~  151 (177)
T d1jqba1          91 RSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTHVYH  151 (177)
T ss_dssp             SSHHHHTTCGGGTTSTTTTCCBTTTBCCSSBSSEEESSHHHHCEECCTTSCGGGGEEEEEE
T ss_pred             cccchhhhhhcccccccccccccCCCChhcCeeEEEEhhhCeEEECCCCcchHHHHHHHHH
Confidence                                 11235699999999986  468999999999888776543

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.90  E-value=1.8e-24  Score=159.33  Aligned_cols=119  Identities=21%  Similarity=0.284  Sum_probs=101.9

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecC---
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNH---   77 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~---   77 (280)
                      ++++|.|+|++||||||+.++|||++|++...|..+.  ...+|+++|+|++|+|++  +.++.+++||+|+.....   
T Consensus        20 i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~--~~~~p~v~g~e~~G~v~~--~~~~~~~~g~~v~~~~~~~~~   95 (152)
T d1xa0a1          20 VQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKI--VKTYPFVPGIDLAGVVVS--SQHPRFREGDEVIATGYEIGV   95 (152)
T ss_dssp             EEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSS--CCSSSBCCCSEEEEEEEE--CCSSSCCTTCEEEEESTTBTT
T ss_pred             EEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccc--cccccceeeeeeeeeeec--cCCCccccCCEEEEecCcccc
Confidence            3578999999999999999999999999988887642  346789999999999999  667789999999886432   


Q ss_pred             CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHHhhh
Q 048785           78 FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALTQSA  124 (280)
Q Consensus        78 ~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~~~~  124 (280)
                      ..+|+|+||+.+|++.++++|++++ .+||+++++++|||.++....
T Consensus        96 ~~~G~~aEy~~v~~~~~~~iP~~l~-~~aa~l~~a~~ta~~~~~~~~  141 (152)
T d1xa0a1          96 THFGGYSEYARLHGEWLVPLPKGLE-RIAQEISLAELPQALKRILRG  141 (152)
T ss_dssp             TBCCSSBSEEEECGGGCEECCTTHH-HHEEEEEGGGHHHHHHHHHHT
T ss_pred             ccCCCcceeeeehhhccccCCCCCC-HHHHHHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999998 578889999889988875543

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.90  E-value=5.3e-24  Score=161.07  Aligned_cols=121  Identities=26%  Similarity=0.334  Sum_probs=96.8

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCC-----CCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe-
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPI-----LPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI-   74 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~-----~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~-   74 (280)
                      ++|+|.|+|+++||+||+.++|||++|+++++|..+..     ....+|+++|||++|+|+++|++++++++||+|++. 
T Consensus        15 i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~v~~~~~GdrV~~~~   94 (177)
T d1jvba1          15 LQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNP   94 (177)
T ss_dssp             EEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTTCCSCCTTCEEEECC
T ss_pred             EEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccCccccccCceEeeee
Confidence            46899999999999999999999999999999875421     223689999999999999999999999999999764 


Q ss_pred             -----------------------ecCCCCCcceeEEeecccccccCCCCCChhhhccc-chhHHHHHHHHH
Q 048785           75 -----------------------LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGL-PLAGLTALEALT  121 (280)
Q Consensus        75 -----------------------~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~-~~~~~~a~~~l~  121 (280)
                                             .+...+|+|+||+.+|...++..|+++++.++|++ ..++.+|++++.
T Consensus        95 ~~~c~~c~~~~~g~~~~c~~~~~~g~~~~G~~aey~~vp~~~~~~~~~~~~~~~~a~~~~~~~~~a~~~~~  165 (177)
T d1jvba1          95 WQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEAIDNLE  165 (177)
T ss_dssp             EECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEECSSSCCCCEEEEEGGGHHHHHHHHH
T ss_pred             ccccccccccccccccccCCcceeeeccccccccEEEEEhHHeEEECCCCChHHHHHHHHHHHHHHHHHHH
Confidence                                   12235699999999987665444455555666655 457778888884

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4.6e-24  Score=160.79  Aligned_cols=115  Identities=15%  Similarity=0.207  Sum_probs=93.0

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEee-----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAIL-----   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-----   75 (280)
                      ++|+|.|.|+++|||||+.++|||++|++.+.|....   ..+|+++|||++|+|+++|++|+++++||+|....     
T Consensus        15 i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~---~~~P~i~GhE~~G~V~~vG~~V~~~~vGdrV~v~~~~~~c   91 (179)
T d1uufa1          15 PMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAG---TVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSC   91 (179)
T ss_dssp             EEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSC---CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSEEECC
T ss_pred             EEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeecc---ccccccccccccccchhhccccccCCCCCEEEEccccccc
Confidence            3689999999999999999999999999999987652   37899999999999999999999999999996421     


Q ss_pred             c----------------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHH
Q 048785           76 N----------------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT  121 (280)
Q Consensus        76 ~----------------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  121 (280)
                      +                            ....|+|+||+.+|+++++++|+.......   ...+.++++++.
T Consensus        92 g~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~~ip~~~~~~~~---a~~l~~a~~a~~  162 (179)
T d1uufa1          92 KHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRVADIEMIR---ADQINEAYERML  162 (179)
T ss_dssp             SSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCCCCEEEEC---GGGHHHHHHHHH
T ss_pred             CccccccCcccccCCCccccccccCCCCCcccccccceEEEechHHEEECCCCCcChhH---hchhHHHHHHHH
Confidence            0                            023589999999999999999965432222   223447777773

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=1e-24  Score=167.38  Aligned_cols=115  Identities=23%  Similarity=0.267  Sum_probs=93.8

Q ss_pred             CCCCCCCC-------CCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEe
Q 048785            2 VHVPVPTP-------RKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI   74 (280)
Q Consensus         2 ~~~~~~~~-------~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   74 (280)
                      +|+|.|.+       +++||+||+.+++||++|+++++|..+    ..+|+++|||++|+|+++|++|++|++||||+..
T Consensus        16 ~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~----~~~P~v~GHE~~G~Vv~vG~~V~~~~vGdrV~v~   91 (201)
T d1kola1          16 QKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT----AQVGLVLGHEITGEVIEKGRDVENLQIGDLVSVP   91 (201)
T ss_dssp             EEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC----CCTTCBCCCCEEEEEEEECTTCCSCCTTCEEECC
T ss_pred             EEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCcc----cccceeccceeeeeeeccccccccccccceeEEe
Confidence            45666643       569999999999999999999998875    3689999999999999999999999999999742


Q ss_pred             ec----------------------------------CCCCCcceeEEeecc--cccccCCCCCChhhhcccchhHHHHHH
Q 048785           75 LN----------------------------------HFSGGGLAEFAMVKE--SLTASRPLEVSAAEGAGLPLAGLTALE  118 (280)
Q Consensus        75 ~~----------------------------------~~~~g~~~~~~~v~~--~~~~~~p~~~~~~~aa~~~~~~~~a~~  118 (280)
                      ..                                  ...+|+|+||+++|.  .+++++|++..+.+++++...+.++++
T Consensus        92 ~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~~~~l~~iPd~~~~~~~~~~~~~~~~~~~  171 (201)
T d1kola1          92 FNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVI  171 (201)
T ss_dssp             SEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHHHHHHTCCHHHHHTEEEE
T ss_pred             eeeeccCChhhhCCCcccccccccccccccccccCCCccccccccEEEeehHHCeEEECCCCCChHHHHHHHHHHHHHHH
Confidence            10                                  124689999999985  369999998777777777666666666


Q ss_pred             HH
Q 048785          119 AL  120 (280)
Q Consensus       119 ~l  120 (280)
                      ++
T Consensus       172 a~  173 (201)
T d1kola1         172 SL  173 (201)
T ss_dssp             CG
T ss_pred             HH
Confidence            65

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.88  E-value=5.3e-23  Score=158.12  Aligned_cols=108  Identities=19%  Similarity=0.290  Sum_probs=92.4

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN----   76 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~----   76 (280)
                      ++|+|.|.|+++||||||.++|||++|++.++|..+    ..+|+++|||++|+|+++|++++++++||+|++...    
T Consensus        23 i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~----~~~P~i~GHE~~G~Vv~vG~~v~~~~vGdrV~v~~~~~c~   98 (198)
T d2jhfa1          23 IEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLV----TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCG   98 (198)
T ss_dssp             EEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSC----CCSSBCCCCSEEEEEEEECTTCCSCCTTCEEEECSSCCCS
T ss_pred             EEEEECCCCCCCEEEEEEEEEecccccceeecCCcc----cccceecccceeEEEEecCccccCcCCCCEEEEeeeeccc
Confidence            468899999999999999999999999999999875    368999999999999999999999999999977310    


Q ss_pred             -----------------------------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchh
Q 048785           77 -----------------------------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLA  112 (280)
Q Consensus        77 -----------------------------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~  112 (280)
                                                               ....|+|+||+++|+.+++++|+.++++.+++...+
T Consensus        99 ~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~~~p~~~~~e~l~~~~~~  175 (198)
T d2jhfa1          99 KCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALDPLITHVLP  175 (198)
T ss_dssp             CSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEE
T ss_pred             ccccccCCccceeccccccccCccccCccccccccCceeccCCCCCcccCeEEeCHHHeEECCCCCCHHHHHHHHHH
Confidence                                                     012389999999999999999999887666555433

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.87  E-value=1e-22  Score=156.01  Aligned_cols=109  Identities=21%  Similarity=0.299  Sum_probs=94.0

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec----
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN----   76 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~----   76 (280)
                      ++|+|+|+|+++|||||+.++|||++|+++++|..+    ..+|.++|||++|+|+++|++++++++||||+....    
T Consensus        23 i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~----~~~P~i~GHE~~G~Vv~~G~~v~~~~~GdrV~~~~~~~Cg   98 (198)
T d1p0fa1          23 LETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP----SKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCG   98 (198)
T ss_dssp             EEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC----CCSSBCCCCCEEEEEEEECTTCCSCCTTCEEEECSSCCCS
T ss_pred             EEEEECCCCCCCEEEEEEEEEEEecccceeeeeccc----cccccccceeeeeeeeecCcccccCcCCCEEEEEeecccc
Confidence            468899999999999999999999999999998764    478999999999999999999999999999987310    


Q ss_pred             -----------------------------------------CCCCCcceeEEeecccccccCCCCCChhhhcccchhH
Q 048785           77 -----------------------------------------HFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAG  113 (280)
Q Consensus        77 -----------------------------------------~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~  113 (280)
                                                               ....|+|+||+.+++.+++++|+.++.+.++...+..
T Consensus        99 ~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~kip~~~~~~~~~~~~~~~  176 (198)
T d1p0fa1          99 SCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTL  176 (198)
T ss_dssp             SSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEECTTSCGGGGEEEEECG
T ss_pred             ccccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEEecHHHEEECCCCCCHHHHHHhhcch
Confidence                                                     0124789999999999999999999988776665544

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.8e-22  Score=152.33  Aligned_cols=111  Identities=18%  Similarity=0.224  Sum_probs=91.2

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCC-----CCCCCCEEEEee
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVK-----NFKAGYNVVAIL   75 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~-----~~~~Gd~V~~~~   75 (280)
                      ++|+|+|.|+++|||||+.++|||++|+++++|..+.   ..+|+++|||++|+|+++|++|+     .+++||+|+...
T Consensus        19 i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~---~~~P~vlGHE~~G~V~~vG~~v~~~~~~~~~~Gd~V~~~~   95 (184)
T d1vj0a1          19 YKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPR---VPLPIILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNR   95 (184)
T ss_dssp             EEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTT---CCSSBCCCCEEEEEEEEESSCCBCTTSCBCCTTCEEEECS
T ss_pred             EEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCc---cccccccceeeeeeeeEEeccccccccccccceeeeEecc
Confidence            3678999999999999999999999999999998753   36899999999999999999986     468999998631


Q ss_pred             c---------------------------------CCCCCcceeEEeec-ccccccCCCCCChhhhcccchhHHHHHHHH
Q 048785           76 N---------------------------------HFSGGGLAEFAMVK-ESLTASRPLEVSAAEGAGLPLAGLTALEAL  120 (280)
Q Consensus        76 ~---------------------------------~~~~g~~~~~~~v~-~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l  120 (280)
                      .                                 ...+|+|+||+.++ +++++++|++++.++    |++  +|++++
T Consensus        96 ~~~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~v~~ip~~l~~~~----pl~--~A~~a~  168 (184)
T d1vj0a1          96 GITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKITHRL----PLK--EANKAL  168 (184)
T ss_dssp             EECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTCCEEE----EGG--GHHHHH
T ss_pred             ccccccChhHhCccccccCCCceeeccCCCCCCCCCcceeCcCcEEechhHcEEECCCCCCHHH----HHH--HHHHHH
Confidence            1                                 02378999999996 578999999998653    222  566666

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=3e-23  Score=154.28  Aligned_cols=116  Identities=28%  Similarity=0.294  Sum_probs=102.0

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeec---C
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILN---H   77 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~---~   77 (280)
                      +++++.|++++||||||++|+|||++|++.+.|..+.  ....|.++|+|++|+|++  +.++.+++||+|+....   .
T Consensus        20 ~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~--~~~~~~~~g~e~~G~v~~--~~~~~~~~g~~v~~~~~~~g~   95 (162)
T d1tt7a1          20 VKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNI--VREYPLILGIDAAGTVVS--SNDPRFAEGDEVIATSYELGV   95 (162)
T ss_dssp             EEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTT--CSSCSEECCSEEEEEEEE--CSSTTCCTTCEEEEESTTBTT
T ss_pred             EEEcCCCCCCCCEEEEEEEEecccchhhheeeecccc--cccceeeeeeeccccccc--ccccccccceeeEeeecccee
Confidence            3678899999999999999999999999988887652  336678999999999998  66778999999988643   3


Q ss_pred             CCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHH
Q 048785           78 FSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEAL  120 (280)
Q Consensus        78 ~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l  120 (280)
                      ..+|+|+||+.+|++.++++|+++++++||++++.++|||.++
T Consensus        96 ~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~  138 (162)
T d1tt7a1          96 SRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVS  138 (162)
T ss_dssp             TBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEEC
T ss_pred             ccccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999998998765

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.86  E-value=2.5e-22  Score=150.43  Aligned_cols=148  Identities=18%  Similarity=0.186  Sum_probs=115.7

Q ss_pred             CChhhhcccchhHHHHHHHHHhh---hh----------------------hhhhCCCEEEEEec-CCcHHHHHhcCCCee
Q 048785          101 VSAAEGAGLPLAGLTALEALTQS---AG----------------------LAKLGNSHVTATCG-ARNIEFVKSLGADEV  154 (280)
Q Consensus       101 ~~~~~aa~~~~~~~~a~~~l~~~---~~----------------------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v  154 (280)
                      +|++|||++|++++|||++++..   .+                      +|+.+|++||++++ +++.++++++|++++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~v   80 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEV   80 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhccccee
Confidence            58999999999999999887532   21                      99999999999996 589999999999999


Q ss_pred             ecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEE-cCCHH
Q 048785          155 LDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLV-IPKGE  233 (280)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  233 (280)
                      +|+++...+....+.++++|+|||++|++.++.++++|+++||++.+|...+....++...+.+++.++.+... ....+
T Consensus        81 i~~~~~~~~~~~~~~~~gvD~vid~vgg~~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv~~~~~~~~  160 (176)
T d1xa0a2          81 LAREDVMAERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYCPMD  160 (176)
T ss_dssp             EECC---------CCSCCEEEEEECSTTTTHHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSSSCCHH
T ss_pred             eecchhHHHHHHHhhccCcCEEEEcCCchhHHHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEEeCCcCCHH
Confidence            99876655555677888999999999999999999999999999999977666666667777788888888532 33456


Q ss_pred             HHHHHHHHHHCCCeeE
Q 048785          234 NLVFLVKLLKEGKIKT  249 (280)
Q Consensus       234 ~~~~~~~~i~~g~~~~  249 (280)
                      ...++++.+. ++++|
T Consensus       161 ~~~~~~~~la-g~lkP  175 (176)
T d1xa0a2         161 LRLRIWERLA-GDLKP  175 (176)
T ss_dssp             HHHHHHHHHH-TTTCC
T ss_pred             HHHHHHHHHh-cccCC
Confidence            6677777664 66654

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.1e-21  Score=145.41  Aligned_cols=143  Identities=19%  Similarity=0.231  Sum_probs=116.5

Q ss_pred             CChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecC
Q 048785          101 VSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDY  157 (280)
Q Consensus       101 ~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~  157 (280)
                      +|+++||+++++++|||++|.+.++                      +|+.+|++||+++++ ++.++++++|+++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~   80 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNH   80 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCccccccc
Confidence            5899999999999999999977654                      899999999999965 78899999999999999


Q ss_pred             CCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEE-cCCHHH
Q 048785          158 KTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLV-IPKGEN  234 (280)
Q Consensus       158 ~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  234 (280)
                      ++.+  ...+..+.++++|++|||+|++.++.++++++++|+++.+|....  ..++...+..++.++.++.. ....++
T Consensus        81 ~~~~~~~~i~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~~--~~~~~~~~~~k~~~i~g~~~~~~~~~~  158 (174)
T d1yb5a2          81 REVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRGT--IEINPRDTMAKESSIIGVTLFSSTKEE  158 (174)
T ss_dssp             TSTTHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCCCSC--EEECTHHHHTTTCEEEECCGGGCCHHH
T ss_pred             ccccHHHHhhhhhccCCceEEeecccHHHHHHHHhccCCCCEEEEEecCCC--CCCCHHHHHHCCCEEEEEEecCCCHHH
Confidence            8877  344566788899999999999889999999999999999985443  22334556677888887654 235677


Q ss_pred             HHHHHHHHHCC
Q 048785          235 LVFLVKLLKEG  245 (280)
Q Consensus       235 ~~~~~~~i~~g  245 (280)
                      ++++++++++|
T Consensus       159 ~~~~~~~l~~g  169 (174)
T d1yb5a2         159 FQQYAAALQAG  169 (174)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888877654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=5.5e-21  Score=145.34  Aligned_cols=147  Identities=21%  Similarity=0.213  Sum_probs=114.1

Q ss_pred             hhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCC
Q 048785          104 AEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTP  160 (280)
Q Consensus       104 ~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~  160 (280)
                      +|||++|++++|||++|.+.++                      +|+.+|++|++++++ ++.+.++++|+++++++++.
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~   80 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSV   80 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCS
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCcc
Confidence            4799999999999999977755                      999999999999864 78999999999999999887


Q ss_pred             C--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEc--------C
Q 048785          161 D--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVI--------P  230 (280)
Q Consensus       161 ~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  230 (280)
                      +  ...++.++++++|++|||+|++.++.++++++++|+++.+|..+.............++..+.++...        .
T Consensus        81 ~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (183)
T d1pqwa_          81 DFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQPAR  160 (183)
T ss_dssp             THHHHHHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTTTCEEEGGGGTTTCEEEECCHHHHHHHCHHH
T ss_pred             CHHHHHHHHhCCCCEEEEEecccchHHHHHHHHhcCCCEEEEEccCCCCCCcccchHHHhCCcEEEEEEccceeccCHHH
Confidence            7  44556678899999999999999999999999999999998544322111111122345555443321        1


Q ss_pred             CHHHHHHHHHHHHCCCeeEe
Q 048785          231 KGENLVFLVKLLKEGKIKTL  250 (280)
Q Consensus       231 ~~~~~~~~~~~i~~g~~~~~  250 (280)
                      .++.++++++++++|+++|+
T Consensus       161 ~~~~~~~v~~~i~~G~i~p~  180 (183)
T d1pqwa_         161 YRQLLQHILQHVADGKLEVL  180 (183)
T ss_dssp             HHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHHHCCCCcee
Confidence            24678899999999999874

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.78  E-value=1.6e-19  Score=135.38  Aligned_cols=143  Identities=24%  Similarity=0.306  Sum_probs=117.7

Q ss_pred             CChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeec
Q 048785          101 VSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLD  156 (280)
Q Consensus       101 ~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~  156 (280)
                      +|+.+||+++++++|||+++.+ ++                      +++..|+ +|++++.+ ++.++++++|++++++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al~~-~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~   79 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAVRK-ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVIN   79 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeec
Confidence            5789999999999999999955 33                      7777886 88888854 7899999999999999


Q ss_pred             CCCCC--cccccCCCCCcccEEEECCCCCC-cccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHH
Q 048785          157 YKTPD--GAALKSPSGRKYDAVIHCARGIP-WSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGE  233 (280)
Q Consensus       157 ~~~~~--~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (280)
                      +++.+  ...++.+.++++|++|||+|++. ++.++++++++|+++.+|.... ...++...+.++++++.++. ..+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~k~i~i~Gs~-~~~~~  157 (170)
T d1jvba2          80 ASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGA-DLHYHAPLITLSEIQFVGSL-VGNQS  157 (170)
T ss_dssp             TTTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCC-CCCCCHHHHHHHTCEEEECC-SCCHH
T ss_pred             cCCcCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccccC-ccccCHHHHHhCCcEEEEEe-cCCHH
Confidence            88776  34455677888999999999865 8999999999999999985433 24455666777889988865 45789


Q ss_pred             HHHHHHHHHHCCC
Q 048785          234 NLVFLVKLLKEGK  246 (280)
Q Consensus       234 ~~~~~~~~i~~g~  246 (280)
                      +++++++++++||
T Consensus       158 d~~~~l~lv~~GK  170 (170)
T d1jvba2         158 DFLGIMRLAEAGK  170 (170)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999999986

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.77  E-value=2.1e-19  Score=134.90  Aligned_cols=142  Identities=24%  Similarity=0.225  Sum_probs=117.6

Q ss_pred             ChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecC
Q 048785          102 SAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDY  157 (280)
Q Consensus       102 ~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~  157 (280)
                      .+.++|+++++++|||+++.+...                      +++.+|+ +|++++++ +|+++++++|+++++++
T Consensus         5 ~l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~   84 (172)
T d1h2ba2           5 KLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDA   84 (172)
T ss_dssp             HHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEET
T ss_pred             hHHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecC
Confidence            367899999999999999976542                      7888887 77777764 78999999999999998


Q ss_pred             CCCC-cccccCCCCCcccEEEECCCCCC-cccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHH
Q 048785          158 KTPD-GAALKSPSGRKYDAVIHCARGIP-WSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENL  235 (280)
Q Consensus       158 ~~~~-~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (280)
                      ++.. ...++.+.+.++|++|||+|+.. ++.++++++++|+++.+|....  .+++...+++++.++.+++ ..+.+++
T Consensus        85 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~--~~~~~~~l~~k~~~i~Gs~-~~~~~d~  161 (172)
T d1h2ba2          85 RRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGGE--LRFPTIRVISSEVSFEGSL-VGNYVEL  161 (172)
T ss_dssp             TSCHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSSC--CCCCHHHHHHTTCEEEECC-SCCHHHH
T ss_pred             cccHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCccc--ccCCHHHHHhCCcEEEEEE-ecCHHHH
Confidence            7765 34556677889999999999975 8999999999999999985432  3455667788999999876 4578899


Q ss_pred             HHHHHHHHCCC
Q 048785          236 VFLVKLLKEGK  246 (280)
Q Consensus       236 ~~~~~~i~~g~  246 (280)
                      +++++++++|+
T Consensus       162 ~~~l~l~~~GK  172 (172)
T d1h2ba2         162 HELVTLALQGK  172 (172)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHcCC
Confidence            99999999986

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.77  E-value=3.7e-19  Score=134.03  Aligned_cols=116  Identities=20%  Similarity=0.172  Sum_probs=95.5

Q ss_pred             CCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCC-------CCCCccccccceEEEEEeCCCCCCCCCCCEEEEe
Q 048785            2 VHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILP-------RKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAI   74 (280)
Q Consensus         2 ~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~-------~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   74 (280)
                      .++|.|+|+++||+||+++++||++|+.+++|..+....       ..+|.++|+|++|+|+++|..++.++.||+|...
T Consensus        24 ~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~g~V~~~~~~~~~~~~g~~v~~~  103 (175)
T d1gu7a1          24 FEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPS  103 (175)
T ss_dssp             EEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCEEEEEEECTTCCSCCTTCEEEES
T ss_pred             EECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCcccccccccccccccccccccccccceecc
Confidence            367888899999999999999999999999987643211       2567889999999999999999999999999865


Q ss_pred             ecCCCCCcceeEEeecccccccCCCCCChhhhcccchhHHHHHHHHH
Q 048785           75 LNHFSGGGLAEFAMVKESLTASRPLEVSAAEGAGLPLAGLTALEALT  121 (280)
Q Consensus        75 ~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~~~~~~~~a~~~l~  121 (280)
                      .  ...|+|+||+.+|++.++++|++++.+.++  ++..+|||+++.
T Consensus       104 ~--~~~g~~aey~~v~~~~~~~iP~~~~~~~a~--~~~~~ta~~~l~  146 (175)
T d1gu7a1         104 H--VNFGTWRTHALGNDDDFIKLPNPAQSKANG--KPNGLTDAKSIE  146 (175)
T ss_dssp             S--SCCCCSBSEEEEEGGGEEEECCHHHHHHTT--CSCCCCCCCCEE
T ss_pred             c--cccccccceeeehhhhccCCCccchhhhhc--cchHHHHHHHHH
Confidence            3  367899999999999999999987644443  445557777763

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=8.4e-20  Score=138.16  Aligned_cols=105  Identities=21%  Similarity=0.267  Sum_probs=92.9

Q ss_pred             CChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecC
Q 048785          101 VSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDY  157 (280)
Q Consensus       101 ~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~  157 (280)
                      +|+++||+++++++|||++|.+.++                      +|+..|++||+++++ +++++++++|+++++|+
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~   80 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINY   80 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEEC
Confidence            5899999999999999999977654                      999999999999864 88999999999999999


Q ss_pred             CCCC--cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCc
Q 048785          158 KTPD--GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTP  205 (280)
Q Consensus       158 ~~~~--~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~  205 (280)
                      ++.+  ...++.++++++|+++|++|++.+..++++++++|+++.++...
T Consensus        81 ~~~d~~~~v~~~t~g~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~  130 (179)
T d1qora2          81 REEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSS  130 (179)
T ss_dssp             TTSCHHHHHHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCCTT
T ss_pred             CCCCHHHHHHHHhCCCCeEEEEeCccHHHHHHHHHHHhcCCeeeeccccc
Confidence            8877  34556678889999999999999999999999999999887444

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1e-18  Score=130.55  Aligned_cols=141  Identities=17%  Similarity=0.232  Sum_probs=112.8

Q ss_pred             hhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCCC
Q 048785          103 AAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTP  160 (280)
Q Consensus       103 ~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~  160 (280)
                      .+.||+++|++.|||+++.+ ++                     +++.+|++||++++ ++|.++++++|+++++++.+.
T Consensus         3 ~e~AApl~cag~Ta~~al~~-~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~   81 (168)
T d1piwa2           3 SHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEE   81 (168)
T ss_dssp             HHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGT
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccch
Confidence            46788999999999999964 33                     88999999999995 589999999999999987655


Q ss_pred             CcccccCCCCCcccEEEECCCCCC---cccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHHH
Q 048785          161 DGAALKSPSGRKYDAVIHCARGIP---WSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLVF  237 (280)
Q Consensus       161 ~~~~~~~~~~~~~d~v~d~~g~~~---~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (280)
                      .....  ...+++|.++||+++..   ++.++++++++|+++.+|..... ..++...+.+++.++.+.. ..+++++++
T Consensus        82 ~~~~~--~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~-~~~~~~~~~~k~~~i~Gs~-~g~~~~~~e  157 (168)
T d1piwa2          82 GDWGE--KYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQH-EMLSLKPYGLKAVSISYSA-LGSIKELNQ  157 (168)
T ss_dssp             SCHHH--HSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCSS-CCEEECGGGCBSCEEEECC-CCCHHHHHH
T ss_pred             HHHHH--hhhcccceEEEEecCCccchHHHHHHHhhccceEEEecccccc-ccccHHHHHhCCcEEEEEe-eCCHHHHHH
Confidence            42111  12356999999988643   78899999999999999855432 3455666778888888865 467899999


Q ss_pred             HHHHHHCCCee
Q 048785          238 LVKLLKEGKIK  248 (280)
Q Consensus       238 ~~~~i~~g~~~  248 (280)
                      +++++++|+++
T Consensus       158 ~l~li~~gkIk  168 (168)
T d1piwa2         158 LLKLVSEKDIK  168 (168)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHhCCCC
Confidence            99999999875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.5e-18  Score=129.73  Aligned_cols=143  Identities=21%  Similarity=0.219  Sum_probs=113.4

Q ss_pred             CCChhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecC
Q 048785          100 EVSAAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDY  157 (280)
Q Consensus       100 ~~~~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~  157 (280)
                      ..+++.+|.++|+++|+|+++. .++                     +|+.+|+++|++++ ++++++++++|+++++++
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al~-~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~   81 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPLR-HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNS   81 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEET
T ss_pred             cccHHHHHHHHhHHHHHHHHHH-HhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEEC
Confidence            3567888899999999999995 444                     99999998888885 478899999999999998


Q ss_pred             CCCCcccccCCCCCcccEEEECCCCCC-cccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHH
Q 048785          158 KTPDGAALKSPSGRKYDAVIHCARGIP-WSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLV  236 (280)
Q Consensus       158 ~~~~~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (280)
                      .+.....   ...+++|++|||+|++. ++.++++++++|+++.+|........+....+.++++++.+.+ ..+.++++
T Consensus        82 ~~~~~~~---~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~-~~~~~d~~  157 (168)
T d1uufa2          82 RNADEMA---AHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSM-IGGIPETQ  157 (168)
T ss_dssp             TCHHHHH---TTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECC-SCCHHHHH
T ss_pred             chhhHHH---HhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEEEe-ecCHHHHH
Confidence            7654221   23468999999999865 8999999999999999997666556667777788999998876 46789999


Q ss_pred             HHHHHHHCCCe
Q 048785          237 FLVKLLKEGKI  247 (280)
Q Consensus       237 ~~~~~i~~g~~  247 (280)
                      ++++++++++|
T Consensus       158 e~l~l~a~~~I  168 (168)
T d1uufa2         158 EMLDFCAEHGI  168 (168)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHcCC
Confidence            99999988764

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.75  E-value=5.8e-20  Score=140.08  Aligned_cols=146  Identities=21%  Similarity=0.262  Sum_probs=112.9

Q ss_pred             CChhhhcccchhHHHHHHHHHhhhh-----------------------hhhhCCCEEEEEecC-Cc----HHHHHhcCCC
Q 048785          101 VSAAEGAGLPLAGLTALEALTQSAG-----------------------LAKLGNSHVTATCGA-RN----IEFVKSLGAD  152 (280)
Q Consensus       101 ~~~~~aa~~~~~~~~a~~~l~~~~~-----------------------la~~~G~~Vi~~~~~-~~----~~~~~~~g~~  152 (280)
                      +|+++||++|++++|||++|.+..+                       +||.+|++||++++. ++    .+.++++|++
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad   80 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT   80 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc
Confidence            5899999999999999999977654                       999999999999843 33    4567899999


Q ss_pred             eeecCCCCCcc-------cccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEE
Q 048785          153 EVLDYKTPDGA-------ALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVP  225 (280)
Q Consensus       153 ~v~~~~~~~~~-------~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  225 (280)
                      +++++++....       ......++++|++|||+|++.+..++++|+++|+++.+|.....+..++...+.++++++.+
T Consensus        81 ~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~~k~~~i~G  160 (189)
T d1gu7a2          81 QVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAG  160 (189)
T ss_dssp             EEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEE
T ss_pred             EEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcchhhhhhhhhcCCcEEEEECCccCCCccCcHHHHHHCCcEEEE
Confidence            99987543311       11223567899999999999999999999999999999866554455556667778888887


Q ss_pred             EEEcC--------CHHHHHHHHHHHHCCC
Q 048785          226 LLVIP--------KGENLVFLVKLLKEGK  246 (280)
Q Consensus       226 ~~~~~--------~~~~~~~~~~~i~~g~  246 (280)
                      +....        .++.+.++++++++|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         161 FWVTELLKNNKELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             CCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             EEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence            64311        1356788888888875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.74  E-value=5.7e-19  Score=132.68  Aligned_cols=145  Identities=20%  Similarity=0.156  Sum_probs=114.1

Q ss_pred             ChhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCC
Q 048785          102 SAAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYK  158 (280)
Q Consensus       102 ~~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~  158 (280)
                      .++.|++++|++.|||+++.+.++                     +++.+|+ +|+++++ ++|+++++++|++++++++
T Consensus         2 P~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~   81 (174)
T d1f8fa2           2 PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSK   81 (174)
T ss_dssp             CGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETT
T ss_pred             CHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCC
Confidence            357789999999999999877655                     8889999 5556665 4789999999999999998


Q ss_pred             CCC-cccccCCCCCcccEEEECCCCCC-cccccccccCCcEEEEeCCCc-hhhHHHHHhhhhccceeeEEEEEc--CCHH
Q 048785          159 TPD-GAALKSPSGRKYDAVIHCARGIP-WSTFEPNLAENGKVIDLTPTP-SAMLTFAWQKLTFSKKQLVPLLVI--PKGE  233 (280)
Q Consensus       159 ~~~-~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  233 (280)
                      +.+ .+.+....++++|++|||+|++. ++.++++++++|+++.+|... .....++...+.++++++.++...  ..++
T Consensus        82 ~~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g~~~~~~  161 (174)
T d1f8fa2          82 TQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKK  161 (174)
T ss_dssp             TSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGSCHHH
T ss_pred             CcCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCCcccccCHHHHHHCCCEEEEEEecCCChHH
Confidence            766 33333334458999999999865 789999999999999998543 334455667778889998886532  2367


Q ss_pred             HHHHHHHHHHCCC
Q 048785          234 NLVFLVKLLKEGK  246 (280)
Q Consensus       234 ~~~~~~~~i~~g~  246 (280)
                      +++++++|+++|+
T Consensus       162 ~~~~~~~l~~~Gk  174 (174)
T d1f8fa2         162 FIPELVRLYQQGK  174 (174)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHcCC
Confidence            8999999999986

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.73  E-value=6.3e-19  Score=131.55  Aligned_cols=141  Identities=19%  Similarity=0.202  Sum_probs=111.4

Q ss_pred             CChhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCC
Q 048785          101 VSAAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYK  158 (280)
Q Consensus       101 ~~~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~  158 (280)
                      +++++||+++++++|||+++.+ ++                     +++.+|++|++++++ +++++++++|++++++++
T Consensus         1 v~f~~aA~l~ca~~Ta~~al~~-~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~   79 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGLKQ-TNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNAR   79 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcccccccc
Confidence            5799999999999999999954 44                     899999999999965 789999999999999988


Q ss_pred             CCC-cccccCCCCCcccEEEECCCC-CCcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHH
Q 048785          159 TPD-GAALKSPSGRKYDAVIHCARG-IPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLV  236 (280)
Q Consensus       159 ~~~-~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (280)
                      +.+ .+.+..... +++.+++++++ ..++.++++++++|+++.+|..... ..++...+.++++++.++. ..++++++
T Consensus        80 ~~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~-~~~~~~~~~~k~~~i~Gs~-~~~~~d~~  156 (166)
T d1llua2          80 QEDPVEAIQRDIG-GAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPGD-FPTPIFDVVLKGLHIAGSI-VGTRADLQ  156 (166)
T ss_dssp             TSCHHHHHHHHHS-SEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCCSSE-EEEEHHHHHHTTCEEEECC-SCCHHHHH
T ss_pred             chhHHHHHHHhhc-CCcccccccccchHHHHHHHHhcCCcEEEEEEecCCC-ccCCHHHHHhCCcEEEEEe-ecCHHHHH
Confidence            776 333332233 35555555555 5588999999999999999865432 3455666778899998865 35788999


Q ss_pred             HHHHHHHCC
Q 048785          237 FLVKLLKEG  245 (280)
Q Consensus       237 ~~~~~i~~g  245 (280)
                      ++++++++|
T Consensus       157 e~l~l~~~G  165 (166)
T d1llua2         157 EALDFAGEG  165 (166)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHCc
Confidence            999999987

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=6.4e-19  Score=131.91  Aligned_cols=123  Identities=20%  Similarity=0.216  Sum_probs=96.5

Q ss_pred             CChhhhcccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecC
Q 048785          101 VSAAEGAGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDY  157 (280)
Q Consensus       101 ~~~~~aa~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~  157 (280)
                      +++++||+++++++|||++|.+ ++                      +|+.+|++||++++ +++.+.++++|+++++|+
T Consensus         1 ls~eeAA~l~~~~~TA~~al~~-~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~   79 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALKR-AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATY   79 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHHH-TTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeeh
Confidence            5899999999999999999965 44                      89999999999996 578999999999999987


Q ss_pred             CCCCcccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEE
Q 048785          158 KTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLV  228 (280)
Q Consensus       158 ~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (280)
                      .+..   ...+.++++|++|||+| +.++.++++++++|+++.+|..++....++...+..+++++.++..
T Consensus        80 ~~~~---~~~~~~~g~D~v~d~~G-~~~~~~~~~l~~~G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~~  146 (171)
T d1iz0a2          80 AEVP---ERAKAWGGLDLVLEVRG-KEVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWL  146 (171)
T ss_dssp             GGHH---HHHHHTTSEEEEEECSC-TTHHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCH
T ss_pred             hhhh---hhhhccccccccccccc-hhHHHHHHHHhcCCcEEEEeCCCCCCCCccHHHHHHCCcEEEEEeC
Confidence            5432   22345678999999987 5789999999999999999866555555556667778888887654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.72  E-value=1.4e-18  Score=130.30  Aligned_cols=145  Identities=17%  Similarity=0.133  Sum_probs=111.0

Q ss_pred             CChhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecC
Q 048785          101 VSAAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDY  157 (280)
Q Consensus       101 ~~~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~  157 (280)
                      +++++|+++++++.|||+++.. ++                     +|+.+|+ +|++++++ +|++.++++|+++++++
T Consensus         1 ip~e~A~~l~~~~~ta~~a~~~-a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~   79 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGAEL-ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNY   79 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHHHH-TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECG
T ss_pred             CCHHHHHHhhhHHHHHHHHHHH-hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccc
Confidence            4689999999999999999844 44                     8999998 89999965 78999999999999999


Q ss_pred             CCCC--cccccCCCCCcccEEEECCCCCC-cccccccccCCcEEEEeCCCchh-hHHH--HHhhhhccceeeEEEEEcCC
Q 048785          158 KTPD--GAALKSPSGRKYDAVIHCARGIP-WSTFEPNLAENGKVIDLTPTPSA-MLTF--AWQKLTFSKKQLVPLLVIPK  231 (280)
Q Consensus       158 ~~~~--~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~  231 (280)
                      ++.+  ....+.++++++|++|||+|++. ++.++++++++|+++.+|..... ...+  ..-....++.++.+......
T Consensus        80 ~~~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  159 (174)
T d1jqba2          80 KNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGG  159 (174)
T ss_dssp             GGSCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBCCCCH
T ss_pred             cchhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEecCCCC
Confidence            8766  33456678889999999999866 89999999999999999854321 1111  11112235566666554445


Q ss_pred             HHHHHHHHHHHHCCC
Q 048785          232 GENLVFLVKLLKEGK  246 (280)
Q Consensus       232 ~~~~~~~~~~i~~g~  246 (280)
                      +..++++++++++|+
T Consensus       160 r~~~e~l~~li~~gk  174 (174)
T d1jqba2         160 RLRAERLRDMVVYNR  174 (174)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             cccHHHHHHHHHcCC
Confidence            667888999999886

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.72  E-value=2.4e-18  Score=130.27  Aligned_cols=139  Identities=24%  Similarity=0.345  Sum_probs=109.8

Q ss_pred             cccchhHHHHHHHHHhhhh----------------------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCC--
Q 048785          107 AGLPLAGLTALEALTQSAG----------------------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPD--  161 (280)
Q Consensus       107 a~~~~~~~~a~~~l~~~~~----------------------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~--  161 (280)
                      ++++++++|||++|.+.++                      +|+..|++||+++++ ++.++++++|+++++++++..  
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~   87 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSL   87 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCH
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHH
Confidence            4677889999999987765                      999999999999965 789999999999999988877  


Q ss_pred             cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCch------hhHHHHHhhhhccceeeEEEEEcC-----
Q 048785          162 GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPS------AMLTFAWQKLTFSKKQLVPLLVIP-----  230 (280)
Q Consensus       162 ~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----  230 (280)
                      ...++.+.++++|++|||+|++.++.++++++++|+++.+|....      .+..+....+.+++.++.++....     
T Consensus        88 ~~~~~~~~~~Gvd~v~D~vG~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~~~~~~  167 (182)
T d1v3va2          88 EEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDV  167 (182)
T ss_dssp             HHHHHHHCTTCEEEEEESSCHHHHHHHGGGEEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGGCCHHH
T ss_pred             HHHHHHhhcCCCceeEEecCchhhhhhhhhccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEeccChHH
Confidence            234556778899999999999989999999999999999984322      122334456667788887764321     


Q ss_pred             CHHHHHHHHHHHHCC
Q 048785          231 KGENLVFLVKLLKEG  245 (280)
Q Consensus       231 ~~~~~~~~~~~i~~g  245 (280)
                      ..+.++++++|+++|
T Consensus       168 ~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         168 REKALRDLMKWVLEG  182 (182)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCc
Confidence            135678888888876

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.70  E-value=3.7e-18  Score=127.65  Aligned_cols=144  Identities=23%  Similarity=0.271  Sum_probs=111.5

Q ss_pred             CChhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCC
Q 048785          101 VSAAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYK  158 (280)
Q Consensus       101 ~~~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~  158 (280)
                      +++++||+++++++|||++++.. +                     +++..|++|++++++ +|+++++++|++.+++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al~~~-~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~   79 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKALKVT-GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPL   79 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHH-TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHh-CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccc
Confidence            57999999999999999999643 3                     888999999999964 899999999999999988


Q ss_pred             CCC-cccccCCCCCcccEEEECCCC-CCcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCHHHHH
Q 048785          159 TPD-GAALKSPSGRKYDAVIHCARG-IPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKGENLV  236 (280)
Q Consensus       159 ~~~-~~~~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (280)
                      +.+ ...+.....+..|++ +++++ ..++.++++++++|+++.+|..... ..++...+..++.++.++. ..++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~~-~~~~~~~~~~~~~~i~gs~-~~~~~~~~  156 (168)
T d1rjwa2          80 KEDAAKFMKEKVGGVHAAV-VTAVSKPAFQSAYNSIRRGGACVLVGLPPEE-MPIPIFDTVLNGIKIIGSI-VGTRKDLQ  156 (168)
T ss_dssp             TSCHHHHHHHHHSSEEEEE-ESSCCHHHHHHHHHHEEEEEEEEECCCCSSE-EEEEHHHHHHTTCEEEECC-SCCHHHHH
T ss_pred             cchhhhhcccccCCCceEE-eecCCHHHHHHHHHHhccCCceEecccccCC-CCCCHHHHHHCCcEEEEEe-eCCHHHHH
Confidence            876 233332233334444 55555 4599999999999999999855432 2334555677888888765 45788999


Q ss_pred             HHHHHHHCCCee
Q 048785          237 FLVKLLKEGKIK  248 (280)
Q Consensus       237 ~~~~~i~~g~~~  248 (280)
                      ++++++++|+++
T Consensus       157 ~~l~l~~~Gkik  168 (168)
T d1rjwa2         157 EALQFAAEGKVK  168 (168)
T ss_dssp             HHHHHHHTTSCC
T ss_pred             HHHHHHHhCCCC
Confidence            999999999985

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=1.4e-17  Score=126.04  Aligned_cols=143  Identities=15%  Similarity=0.176  Sum_probs=113.4

Q ss_pred             ChhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCC
Q 048785          102 SAAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYK  158 (280)
Q Consensus       102 ~~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~  158 (280)
                      ++..+|+++|+++|||+++.+..+                     +|+.+|+ +|++++++ +++++++++|+++++|++
T Consensus         2 d~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~   81 (182)
T d1vj0a2           2 DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRR   81 (182)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETT
T ss_pred             cHHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEecc
Confidence            356688889999999999976544                     8999999 89999964 889999999999999998


Q ss_pred             CCC-c----ccccCCCCCcccEEEECCCCCC-cccccccccCCcEEEEeCCCc-hhhHHH-HHhhhhccceeeEEEEEcC
Q 048785          159 TPD-G----AALKSPSGRKYDAVIHCARGIP-WSTFEPNLAENGKVIDLTPTP-SAMLTF-AWQKLTFSKKQLVPLLVIP  230 (280)
Q Consensus       159 ~~~-~----~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g~~v~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~  230 (280)
                      +.+ .    ...+.+.++++|+||||+|++. ++.++++++++|+++.+|... .....+ .+..+.++++++.+++ ..
T Consensus        82 ~~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~-~~  160 (182)
T d1vj0a2          82 ETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIW-VS  160 (182)
T ss_dssp             TSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECC-CC
T ss_pred             ccchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccccHHHHHHCCcEEEEEE-eC
Confidence            776 1    2344567889999999999865 889999999999999998432 222222 2345667899998876 45


Q ss_pred             CHHHHHHHHHHHHCC
Q 048785          231 KGENLVFLVKLLKEG  245 (280)
Q Consensus       231 ~~~~~~~~~~~i~~g  245 (280)
                      +.+++++++++++++
T Consensus       161 ~~~~~~~~~~~i~~~  175 (182)
T d1vj0a2         161 DTSHFVKTVSITSRN  175 (182)
T ss_dssp             CHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHC
Confidence            788899999998875

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=5.2e-18  Score=126.98  Aligned_cols=125  Identities=18%  Similarity=0.148  Sum_probs=99.8

Q ss_pred             CChhhhcccchhHHHHHHHHHhhhh-------------------------hhhhCCCEEEEEecC-CcHHHHHhcCCCee
Q 048785          101 VSAAEGAGLPLAGLTALEALTQSAG-------------------------LAKLGNSHVTATCGA-RNIEFVKSLGADEV  154 (280)
Q Consensus       101 ~~~~~aa~~~~~~~~a~~~l~~~~~-------------------------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v  154 (280)
                      +|+.+||+++++++|||++++...+                         +||.+|++||+++++ ++.+.++++|++++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~v   80 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRV   80 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccc
Confidence            5789999999999999988753211                         999999999999964 88999999999999


Q ss_pred             ecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEE
Q 048785          155 LDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLL  227 (280)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  227 (280)
                      +|+++..+.  +......+|.++|++|++.+...+++++++|+++.+|........++...+..++.++.++.
T Consensus        81 i~~~~~~~~--~~l~~~~~~~vvD~Vgg~~~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~~  151 (177)
T d1o89a2          81 LPRDEFAES--RPLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVD  151 (177)
T ss_dssp             EEGGGSSSC--CSSCCCCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTCSCCCCCSHHHHHHCCEEEECC
T ss_pred             cccccHHHH--HHHHhhcCCeeEEEcchHHHHHHHHHhccccceEeecccCCccccccHHHHHHCCCeEEEEe
Confidence            998765532  22344557999999999999999999999999999986655444444455566778887754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1e-17  Score=125.45  Aligned_cols=143  Identities=17%  Similarity=0.168  Sum_probs=113.9

Q ss_pred             CChhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecC
Q 048785          101 VSAAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDY  157 (280)
Q Consensus       101 ~~~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~  157 (280)
                      +|+++||++ -++.+||+++.+ ++                     +++.+|+ +|++++++ +|+++++++|+++++++
T Consensus         1 vS~e~Aal~-epla~a~~a~~~-~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~   78 (171)
T d1pl8a2           1 VTFEEGALI-EPLSVGIHACRR-GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI   78 (171)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHH-HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHH-HHHHHHHHHHHH-hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccc
Confidence            478898877 244589999854 33                     8899999 89999965 89999999999999988


Q ss_pred             CCCCc----ccccCCCCCcccEEEECCCCCC-cccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCCH
Q 048785          158 KTPDG----AALKSPSGRKYDAVIHCARGIP-WSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPKG  232 (280)
Q Consensus       158 ~~~~~----~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (280)
                      ++.+.    ..+..+.+.++|++|||+|++. ++.++++++++|+++.+|.... ...+++..+.++++++.+++.  +.
T Consensus        79 ~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~-~~~~~~~~~~~k~l~i~Gs~~--~~  155 (171)
T d1pl8a2          79 SKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSE-MTTVPLLHAAIREVDIKGVFR--YC  155 (171)
T ss_dssp             SSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCS-CCCCCHHHHHHTTCEEEECCS--CS
T ss_pred             cccccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCC-CCccCHHHHHHCCcEEEEEeC--CH
Confidence            77662    2233456778999999999875 8899999999999999986553 234667777889999988653  45


Q ss_pred             HHHHHHHHHHHCCCee
Q 048785          233 ENLVFLVKLLKEGKIK  248 (280)
Q Consensus       233 ~~~~~~~~~i~~g~~~  248 (280)
                      ++++++++++++|++.
T Consensus       156 ~~~~~al~li~~gkid  171 (171)
T d1pl8a2         156 NTWPVAISMLASKSVN  171 (171)
T ss_dssp             SCHHHHHHHHHTTSCC
T ss_pred             hHHHHHHHHHHcCCCC
Confidence            6789999999999873

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.69  E-value=1.1e-17  Score=125.32  Aligned_cols=144  Identities=19%  Similarity=0.113  Sum_probs=107.4

Q ss_pred             ChhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCC
Q 048785          102 SAAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYK  158 (280)
Q Consensus       102 ~~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~  158 (280)
                      +|.+||++.|++.|||+++.+.++                     +++.+|+ +|+++++ ++|+++++++|+++++|++
T Consensus         1 ~P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~   80 (174)
T d1p0fa2           1 APLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPK   80 (174)
T ss_dssp             CCGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCC
Confidence            367899999999999999876655                     8889998 8999986 4899999999999999987


Q ss_pred             CCC---cccccCCCCCcccEEEECCCCCC-cccccccccC-CcEEEEeCCCch-hhHHHHHhhhhccceeeEEEEEc-CC
Q 048785          159 TPD---GAALKSPSGRKYDAVIHCARGIP-WSTFEPNLAE-NGKVIDLTPTPS-AMLTFAWQKLTFSKKQLVPLLVI-PK  231 (280)
Q Consensus       159 ~~~---~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~-~g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~  231 (280)
                      +.+   ......+.++++|++|||+|+.. +..+...+.+ +|+++.+|.... ....++.. ...++.++.++.+. ..
T Consensus        81 ~~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~-~~~~~~~i~Gs~~G~~~  159 (174)
T d1p0fa2          81 DYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPL-LLLTGRSLKGSVFGGFK  159 (174)
T ss_dssp             GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTH-HHHTTCEEEECSGGGCC
T ss_pred             CchhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHH-HHhCCCEEEEEEeCCCC
Confidence            654   23445567779999999999865 6677777765 599999885432 22222211 23356677776532 23


Q ss_pred             HHHHHHHHHHHHCCC
Q 048785          232 GENLVFLVKLLKEGK  246 (280)
Q Consensus       232 ~~~~~~~~~~i~~g~  246 (280)
                      .++++++++++.+|+
T Consensus       160 ~~d~~~lidl~~~gK  174 (174)
T d1p0fa2         160 GEEVSRLVDDYMKKK  174 (174)
T ss_dssp             GGGHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHcCC
Confidence            568999999999886

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.68  E-value=1.2e-17  Score=125.05  Aligned_cols=141  Identities=18%  Similarity=0.205  Sum_probs=110.3

Q ss_pred             CChhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCC
Q 048785          101 VSAAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYK  158 (280)
Q Consensus       101 ~~~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~  158 (280)
                      +|+++||++. ++.|||+++.+. +                     +++.+|++|++++++ +|+++++++|++.+++.+
T Consensus         1 VS~e~Aal~e-Pla~a~~a~~~~-~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~   78 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHACRRA-GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVD   78 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHHHHHH-TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECC
T ss_pred             CCHHHHHHHH-HHHHHHHHHHHh-CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEecc
Confidence            5789998872 344899999543 3                     899999999999965 899999999999887665


Q ss_pred             CCCc------ccccCCCCCcccEEEECCCCCC-cccccccccCCcEEEEeCCCchhhHHHHHhhhhccceeeEEEEEcCC
Q 048785          159 TPDG------AALKSPSGRKYDAVIHCARGIP-WSTFEPNLAENGKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVIPK  231 (280)
Q Consensus       159 ~~~~------~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (280)
                      ....      ..++...+.++|++|||+|++. ++.++++++++|+++.+|..... ..+++..+..+++++.+.+  .+
T Consensus        79 ~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~-~~~~~~~~~~k~i~i~gs~--~~  155 (170)
T d1e3ja2          79 PAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQM-VTVPLVNACAREIDIKSVF--RY  155 (170)
T ss_dssp             TTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSC-CCCCHHHHHTTTCEEEECC--SC
T ss_pred             ccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCCCC-CCcCHHHHHHCCCEEEEEE--CC
Confidence            4331      2234456788999999999975 89999999999999999965532 3456667788999998864  34


Q ss_pred             HHHHHHHHHHHHCCC
Q 048785          232 GENLVFLVKLLKEGK  246 (280)
Q Consensus       232 ~~~~~~~~~~i~~g~  246 (280)
                      .++++++++++++|+
T Consensus       156 ~~~~~~ai~li~~Gk  170 (170)
T d1e3ja2         156 CNDYPIALEMVASGR  170 (170)
T ss_dssp             SSCHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHcCC
Confidence            557899999999986

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.67  E-value=1.5e-17  Score=124.41  Aligned_cols=143  Identities=13%  Similarity=0.080  Sum_probs=107.8

Q ss_pred             ChhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCC
Q 048785          102 SAAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYK  158 (280)
Q Consensus       102 ~~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~  158 (280)
                      +.++||.++|++.|+|+++.+.++                     +++.+|+ +|++++. ++|+++++++|++++++++
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~   81 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR   81 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence            467899999999999999866655                     8999999 7888885 5899999999999999876


Q ss_pred             CCC---cccccCCCCCcccEEEECCCCCC-cccccccccCC-cEEEEeCCCchhhHHHHHhhhhccceeeEEEEE--cCC
Q 048785          159 TPD---GAALKSPSGRKYDAVIHCARGIP-WSTFEPNLAEN-GKVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLV--IPK  231 (280)
Q Consensus       159 ~~~---~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  231 (280)
                      ..+   ......+.++++|++|||+|++. ++.++++++++ |+++.+|..... ..++...+. .+.++.+...  ...
T Consensus        82 ~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~~-~~i~~~~~~-~~k~i~Gs~~Gs~~~  159 (174)
T d1e3ia2          82 ELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDE-MTIPTVDVI-LGRSINGTFFGGWKS  159 (174)
T ss_dssp             GCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSE-EEEEHHHHH-TTCEEEECSGGGCCH
T ss_pred             cchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCCc-cccchHHHh-ccCEEEEEEeeCCCh
Confidence            543   23445567889999999999965 88999999996 999999865432 112222222 2445665443  224


Q ss_pred             HHHHHHHHHHHHCCC
Q 048785          232 GENLVFLVKLLKEGK  246 (280)
Q Consensus       232 ~~~~~~~~~~i~~g~  246 (280)
                      .++++++++++.+|+
T Consensus       160 ~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         160 VDSVPNLVSDYKNKK  174 (174)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHCcC
Confidence            678899999998885

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.67  E-value=9.2e-18  Score=124.42  Aligned_cols=122  Identities=15%  Similarity=0.177  Sum_probs=97.6

Q ss_pred             hhhhCCCEEEEEecC-CcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCC
Q 048785          126 LAKLGNSHVTATCGA-RNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPT  204 (280)
Q Consensus       126 la~~~G~~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~  204 (280)
                      |||.+|++||+++++ ++.++++++|+++++++++..++.+..+.++++|++||++|++.++.++++|+++|+++.+|..
T Consensus        43 lAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vgg~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          43 MLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             HHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCTHHHHHHHTTEEEEEEEEECCCS
T ss_pred             HHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCcHHHHHHHHHHhccCceEEEeecc
Confidence            999999999999975 8999999999999998876555666677888999999999999999999999999999999977


Q ss_pred             chhhHHHHHhhhhccceeeEEEEEcC-CHHHHHHHHHHHHCCCee
Q 048785          205 PSAMLTFAWQKLTFSKKQLVPLLVIP-KGENLVFLVKLLKEGKIK  248 (280)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~g~~~  248 (280)
                      .+....++...+.++++++.++.... ..+....+.+.+. +.++
T Consensus       123 ~g~~~~~~~~~l~~k~~~i~G~~~~~~~~~~~~~~~~~l~-~~L~  166 (167)
T d1tt7a2         123 GGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMS-SDLK  166 (167)
T ss_dssp             SCSCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHTT-TTSC
T ss_pred             CCCcccCCHHHHHHCCcEEEEEecCCCCHHHHHHHHHHHH-hcCC
Confidence            76555556667778888888864322 3455555555553 3444

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.65  E-value=3.2e-17  Score=123.39  Aligned_cols=144  Identities=13%  Similarity=-0.015  Sum_probs=105.3

Q ss_pred             hhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCCC
Q 048785          103 AAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYKT  159 (280)
Q Consensus       103 ~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~~  159 (280)
                      +++||+++|++.|||+++.+.++                     +++.+|+ +|++++++ +++++++++|+++++++++
T Consensus         3 ~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~   82 (176)
T d2fzwa2           3 LDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQD   82 (176)
T ss_dssp             HHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGG
T ss_pred             HHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCc
Confidence            57899999999999999976655                     8889997 78888864 7899999999999999865


Q ss_pred             CC---cccccCCCCCcccEEEECCCCCC-cccccccccCCcEEEEeCC-CchhhHHHHHhhhhccceeeEEEEEc--CCH
Q 048785          160 PD---GAALKSPSGRKYDAVIHCARGIP-WSTFEPNLAENGKVIDLTP-TPSAMLTFAWQKLTFSKKQLVPLLVI--PKG  232 (280)
Q Consensus       160 ~~---~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g~~v~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  232 (280)
                      ..   ...++.+.++++|++|||+|++. +..+..+++++|+++.++. ...............++.++.++...  ...
T Consensus        83 ~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~~  162 (176)
T d2fzwa2          83 FSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSV  162 (176)
T ss_dssp             CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCCHH
T ss_pred             hhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeeccccccccccHHHHHCCCEEEEEeeeCCcHH
Confidence            43   23445566779999999999866 6788889999988776642 22211111112223356677765432  246


Q ss_pred             HHHHHHHHHHHCCC
Q 048785          233 ENLVFLVKLLKEGK  246 (280)
Q Consensus       233 ~~~~~~~~~i~~g~  246 (280)
                      +++.++++++++|+
T Consensus       163 ~d~~~li~l~~~GK  176 (176)
T d2fzwa2         163 ESVPKLVSEYMSKK  176 (176)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHcCC
Confidence            78999999999986

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.65  E-value=4.6e-17  Score=122.35  Aligned_cols=143  Identities=11%  Similarity=0.003  Sum_probs=104.2

Q ss_pred             hhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCC
Q 048785          103 AAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKT  159 (280)
Q Consensus       103 ~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~  159 (280)
                      +++||+++|++.|+|+++.+.++                     +++..|+ +|+++++ ++|++.++++|+++++|+++
T Consensus         3 ~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~   82 (175)
T d1cdoa2           3 LDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPND   82 (175)
T ss_dssp             HHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGG
T ss_pred             HHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCC
Confidence            57899999999999999977655                     6666776 8999996 48999999999999999876


Q ss_pred             CC---cccccCCCCCcccEEEECCCCCC-cccccccccCCcE-EEEeCCCchhhHHHHHhhhhccceeeEEEEEc--CCH
Q 048785          160 PD---GAALKSPSGRKYDAVIHCARGIP-WSTFEPNLAENGK-VIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVI--PKG  232 (280)
Q Consensus       160 ~~---~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g~-~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  232 (280)
                      ..   ...+..+.++++|++||++|+.. +..+..++.++|. ++..+..... ..........++.++.++...  ..+
T Consensus        83 ~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~~-~~~~~~~~~~~~~~i~Gs~~G~~~~~  161 (175)
T d1cdoa2          83 HSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLH-DVATRPIQLIAGRTWKGSMFGGFKGK  161 (175)
T ss_dssp             CSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSS-CEEECHHHHHTTCEEEECSGGGCCHH
T ss_pred             cchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCCc-ccCccHHHHHCCcEEEEEEEeCCcHH
Confidence            54   23445567789999999999865 6777888777654 4445433322 111222233456677775432  246


Q ss_pred             HHHHHHHHHHHCCC
Q 048785          233 ENLVFLVKLLKEGK  246 (280)
Q Consensus       233 ~~~~~~~~~i~~g~  246 (280)
                      ++++++++++.+|+
T Consensus       162 ~d~~~~i~l~~~gK  175 (175)
T d1cdoa2         162 DGVPKMVKAYLDKK  175 (175)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHcCC
Confidence            89999999999986

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.7e-16  Score=120.27  Aligned_cols=145  Identities=21%  Similarity=0.249  Sum_probs=100.1

Q ss_pred             CChhhhcccchhHHHHHHHHHhhhh------------------------hhhhCCC-EEEEEecC-Cc-HHHHHhcCCCe
Q 048785          101 VSAAEGAGLPLAGLTALEALTQSAG------------------------LAKLGNS-HVTATCGA-RN-IEFVKSLGADE  153 (280)
Q Consensus       101 ~~~~~aa~~~~~~~~a~~~l~~~~~------------------------la~~~G~-~Vi~~~~~-~~-~~~~~~~g~~~  153 (280)
                      +|+.+.| ++++++|||++|....+                        +||.+|+ +|++++++ ++ ..+++++|+++
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            4555654 67789999999977643                        9999999 56666644 44 44567899999


Q ss_pred             eecCCCCC-cccccCCCCCcccEEEECCCCCCcccccccccCCcEEEEeCCCchh---------hHHHHHhhhhccceee
Q 048785          154 VLDYKTPD-GAALKSPSGRKYDAVIHCARGIPWSTFEPNLAENGKVIDLTPTPSA---------MLTFAWQKLTFSKKQL  223 (280)
Q Consensus       154 v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~~~~~---------~~~~~~~~~~~~~~~~  223 (280)
                      ++|+++.+ .+.++...++++|++|||+|++.++.++++++++||++.+|..+..         ........+..++.++
T Consensus        81 vi~~~~~~~~~~~~~~~~~GvDvv~D~vGg~~~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~i~~  160 (187)
T d1vj1a2          81 AVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITR  160 (187)
T ss_dssp             EEETTSSCHHHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHTTCEE
T ss_pred             EeeccchhHHHHHHHHhccCceEEEecCCchhHHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhcceEE
Confidence            99998887 4444444568899999999999999999999999999999843211         1111222233466666


Q ss_pred             EEEEEcC----CHHHHHHHHHHHHCCC
Q 048785          224 VPLLVIP----KGENLVFLVKLLKEGK  246 (280)
Q Consensus       224 ~~~~~~~----~~~~~~~~~~~i~~g~  246 (280)
                      .++....    ..+.++++.+++.+|+
T Consensus       161 ~g~~~~~~~~~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         161 ERFTVLNYKDKFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             EECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred             EEeEecchHHHHHHHHHHHHHHHHCcC
Confidence            6543311    2456788888888875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.61  E-value=2.1e-16  Score=118.77  Aligned_cols=144  Identities=13%  Similarity=-0.016  Sum_probs=106.5

Q ss_pred             hhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCC
Q 048785          103 AAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKT  159 (280)
Q Consensus       103 ~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~  159 (280)
                      +++||+++|++.|||+++.+.++                     +++.+|+ +|+++++ ++|.++++++|+++++++.+
T Consensus         3 le~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~   82 (176)
T d2jhfa2           3 LEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQD   82 (176)
T ss_dssp             HHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGG
T ss_pred             HHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCC
Confidence            57899999999999999977655                     7778886 9999996 48999999999999998765


Q ss_pred             CC---cccccCCCCCcccEEEECCCCCC-cccccccccCCc-EEEEeCCCchhhHHHHHhhhhccceeeEEEEEc--CCH
Q 048785          160 PD---GAALKSPSGRKYDAVIHCARGIP-WSTFEPNLAENG-KVIDLTPTPSAMLTFAWQKLTFSKKQLVPLLVI--PKG  232 (280)
Q Consensus       160 ~~---~~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g-~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  232 (280)
                      ..   ...+..+.++++|++|||+|.+. ++.++..+++++ +++..+........+....+..++.++.++...  ..+
T Consensus        83 ~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~~  162 (176)
T d2jhfa2          83 YKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSK  162 (176)
T ss_dssp             CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCCHH
T ss_pred             chhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEEEEeCCCHH
Confidence            43   34455667789999999999876 678888898875 444444333222222222344577788776532  247


Q ss_pred             HHHHHHHHHHHCCC
Q 048785          233 ENLVFLVKLLKEGK  246 (280)
Q Consensus       233 ~~~~~~~~~i~~g~  246 (280)
                      ++++++++++.+|+
T Consensus       163 ~~~~~li~~~~~GK  176 (176)
T d2jhfa2         163 DSVPKLVADFMAKK  176 (176)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHCcC
Confidence            88999999999885

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.60  E-value=2.2e-16  Score=118.35  Aligned_cols=141  Identities=15%  Similarity=0.092  Sum_probs=103.5

Q ss_pred             hhhhcccchhHHHHHHHHHhhhh---------------------hhhhCCC-EEEEEec-CCcHHHHHhcCCCeeecCCC
Q 048785          103 AAEGAGLPLAGLTALEALTQSAG---------------------LAKLGNS-HVTATCG-ARNIEFVKSLGADEVLDYKT  159 (280)
Q Consensus       103 ~~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~-~Vi~~~~-~~~~~~~~~~g~~~v~~~~~  159 (280)
                      ++.||.++|++.|+|+++.+.++                     +++.+|+ +||+++. ++|++.++++|+++++|+++
T Consensus         4 ~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~   83 (176)
T d1d1ta2           4 PEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKD   83 (176)
T ss_dssp             HHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGG
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccc
Confidence            78899999999999999876654                     8899996 9999995 58999999999999999876


Q ss_pred             CCc---ccccCCCCCcccEEEECCCCCC-cccccccccC-CcEEEEeCCCchh-hHHHHHhhhhccceeeEEEEEc--CC
Q 048785          160 PDG---AALKSPSGRKYDAVIHCARGIP-WSTFEPNLAE-NGKVIDLTPTPSA-MLTFAWQKLTFSKKQLVPLLVI--PK  231 (280)
Q Consensus       160 ~~~---~~~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~-~g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~  231 (280)
                      .++   ...+.+.++++|++|||+|+.. +..+...+.+ +|+++.+|..... ...++.. ..+++.++.+....  ..
T Consensus        84 ~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~-~~~~~~~i~Gs~~G~~~~  162 (176)
T d1d1ta2          84 STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPM-LLFTGRTWKGCVFGGLKS  162 (176)
T ss_dssp             CSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTH-HHHTTCEEEECSGGGCCH
T ss_pred             cchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHH-HHhCCCEEEEEEEeCCCc
Confidence            552   2334567889999999999875 6666666655 4999999854432 1111112 23355677775532  24


Q ss_pred             HHHHHHHHHHHHC
Q 048785          232 GENLVFLVKLLKE  244 (280)
Q Consensus       232 ~~~~~~~~~~i~~  244 (280)
                      ++++++++++..+
T Consensus       163 ~~dip~li~~~~~  175 (176)
T d1d1ta2         163 RDDVPKLVTEFLA  175 (176)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhC
Confidence            6788888877543

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.51  E-value=4e-14  Score=101.82  Aligned_cols=106  Identities=19%  Similarity=0.152  Sum_probs=79.5

Q ss_pred             CCCCCCCCCCCCeEEEEEeeeecChhhHHhHhccCCCCCCCCCCccccccceEEEEEeCCCCCCCCCCCEEEEeecCCCC
Q 048785            1 HVHVPVPTPRKDEVLLKVEASSLNAFDWKIKKGVARPILPRKFPYIPATDVAGEIIEVGSEVKNFKAGYNVVAILNHFSG   80 (280)
Q Consensus         1 ~~~~~~~~~~~~evlV~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~   80 (280)
                      ++|.++|+|++||||||++|.+++|..+..+...       ..+.++..+.+|+|++  +++++|++||+|++.      
T Consensus        24 l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~~~-------~~g~~~~g~~vg~Vv~--S~~~~f~~GD~V~g~------   88 (147)
T d1v3va1          24 LKTVELPPLKNGEVLLEALFLSVDPYMRIASKRL-------KEGAVMMGQQVARVVE--SKNSAFPAGSIVLAQ------   88 (147)
T ss_dssp             EEEEECCCCCTTCEEEEEEEEECCTHHHHHGGGS-------CTTSBCCCCEEEEEEE--ESCTTSCTTCEEEEC------
T ss_pred             EEEEECCCCCCCEEEEEEEEEeEccccccccccc-------ccCCccccceEEEEEE--eCCCcccCCCEEEEc------
Confidence            3577889999999999999999998765443221       2234566688999998  788899999999875      


Q ss_pred             CcceeEEeecccccccCCCCCC-----hhhhcccchhHHH-HHHHHH
Q 048785           81 GGLAEFAMVKESLTASRPLEVS-----AAEGAGLPLAGLT-ALEALT  121 (280)
Q Consensus        81 g~~~~~~~v~~~~~~~~p~~~~-----~~~aa~~~~~~~~-a~~~l~  121 (280)
                      ++|+||.+++.+.+.++|+...     ....+++...++| ||..+.
T Consensus        89 ~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~  135 (147)
T d1v3va1          89 SGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEML  135 (147)
T ss_dssp             CCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHHH
T ss_pred             cCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHhh
Confidence            5799999999999999986543     2234556556666 554653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.49  E-value=9.6e-15  Score=110.97  Aligned_cols=141  Identities=11%  Similarity=-0.075  Sum_probs=104.0

Q ss_pred             hhhcccchhHHHHHHHHHhhhh---------------------hhhhCCC-EEEEEecC-CcHHHHHhcCCCeeecCCCC
Q 048785          104 AEGAGLPLAGLTALEALTQSAG---------------------LAKLGNS-HVTATCGA-RNIEFVKSLGADEVLDYKTP  160 (280)
Q Consensus       104 ~~aa~~~~~~~~a~~~l~~~~~---------------------la~~~G~-~Vi~~~~~-~~~~~~~~~g~~~v~~~~~~  160 (280)
                      ++.+++...+.|||+++. .++                     +++..|+ +|++++++ +|+++++++|+++++++.+.
T Consensus         2 ~d~~~l~d~~~ta~~a~~-~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~   80 (195)
T d1kola2           2 RDLTCLSDILPTGYHGAV-TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDT   80 (195)
T ss_dssp             HHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSS
T ss_pred             chHHhcccHHHHHHHHHH-HhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCc
Confidence            467778888889999995 445                     8888898 88898865 89999999999999998777


Q ss_pred             C--cccccCCCCCcccEEEECCCCC----------------CcccccccccCCcEEEEeCCCchh------------hHH
Q 048785          161 D--GAALKSPSGRKYDAVIHCARGI----------------PWSTFEPNLAENGKVIDLTPTPSA------------MLT  210 (280)
Q Consensus       161 ~--~~~~~~~~~~~~d~v~d~~g~~----------------~~~~~~~~l~~~g~~v~~g~~~~~------------~~~  210 (280)
                      +  ....+.+.+.++|++|||+|.+                .++.++++++++|+++.+|.....            ..+
T Consensus        81 ~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~~~~~~~~~~~~~~  160 (195)
T d1kola2          81 PLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLS  160 (195)
T ss_dssp             CHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCCC
T ss_pred             CHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcccchhhhhhcCcee
Confidence            6  3344567888999999999953                377899999999999999843211            011


Q ss_pred             HHHhhhhccceeeEEEEEcCCHHHHHHHHHHHHCCC
Q 048785          211 FAWQKLTFSKKQLVPLLVIPKGENLVFLVKLLKEGK  246 (280)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~  246 (280)
                      +.+..++.+++.+.+.. .+.++.+++++++|.+++
T Consensus       161 ~~~~~~~~k~~~i~~g~-~~v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         161 IRFGLGWAKSHSFHTGQ-TPVMKYNRALMQAIMWDR  195 (195)
T ss_dssp             CCHHHHHHTTCEEEESS-CCHHHHHHHHHHHHHTTS
T ss_pred             eeHHHHHhhcceeccCC-CchHHHHHHHHHHHHcCC
Confidence            22333444566554311 234677889999998875

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=4.2e-08  Score=61.24  Aligned_cols=51  Identities=29%  Similarity=0.341  Sum_probs=43.7

Q ss_pred             CChhhhcccchhHHHHHHHHHhhhh-------------------------hhhhCCCEEEEEec-CCcHHHHHhcCC
Q 048785          101 VSAAEGAGLPLAGLTALEALTQSAG-------------------------LAKLGNSHVTATCG-ARNIEFVKSLGA  151 (280)
Q Consensus       101 ~~~~~aa~~~~~~~~a~~~l~~~~~-------------------------la~~~G~~Vi~~~~-~~~~~~~~~~g~  151 (280)
                      +|+++|++++++++|||.+++...+                         +++.+|++|+++++ +++.++++++|+
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCCC
Confidence            5789999999999999998864322                         99999999999885 589999999885

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=87.12  E-value=0.83  Score=32.20  Aligned_cols=79  Identities=24%  Similarity=0.074  Sum_probs=50.3

Q ss_pred             hhhhhCCCEEEEEe-cCCcHHHHHhcCCCeeecC-CCC-C-c-----------ccccC----C--CCCcccEEEECCCC-
Q 048785          125 GLAKLGNSHVTATC-GARNIEFVKSLGADEVLDY-KTP-D-G-----------AALKS----P--SGRKYDAVIHCARG-  182 (280)
Q Consensus       125 ~la~~~G~~Vi~~~-~~~~~~~~~~~g~~~v~~~-~~~-~-~-----------~~~~~----~--~~~~~d~v~d~~g~-  182 (280)
                      +.|+.+|++|.+.+ +.++++.+++++...+-.. ... . .           +....    .  .=...|+||-++=- 
T Consensus        46 ~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l~~~l~~aDlVI~talip  125 (183)
T d1l7da1          46 ATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIP  125 (183)
T ss_dssp             HHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHHHHTTCSEEEECCCCT
T ss_pred             HHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHHHHHHHhhhhheeeeecC
Confidence            36678999999999 5689999999887544211 000 0 0           00000    0  01247999987752 


Q ss_pred             --CC----cccccccccCCcEEEEeCC
Q 048785          183 --IP----WSTFEPNLAENGKVIDLTP  203 (280)
Q Consensus       183 --~~----~~~~~~~l~~~g~~v~~g~  203 (280)
                        +.    -+.+++.|++|+.+|++..
T Consensus       126 G~~aP~lit~~mv~~Mk~GSVIVDvai  152 (183)
T d1l7da1         126 GKPAPVLITEEMVTKMKPGSVIIDLAV  152 (183)
T ss_dssp             TSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred             CcccceeehHHHHHhcCCCcEEEEEee
Confidence              11    4588999999999999863

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=84.87  E-value=0.2  Score=37.33  Aligned_cols=74  Identities=15%  Similarity=0.065  Sum_probs=42.7

Q ss_pred             hhhhCCCEEEEEec-CCcHHHH----HhcCCCeeecCCCCCcccccCCCCCcccEEEECCCC-----C--Cccccccccc
Q 048785          126 LAKLGNSHVTATCG-ARNIEFV----KSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARG-----I--PWSTFEPNLA  193 (280)
Q Consensus       126 la~~~G~~Vi~~~~-~~~~~~~----~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~-----~--~~~~~~~~l~  193 (280)
                      +++..|++|++++- +...+.+    ...|....+.....+...  ....+.||+|+..-.-     .  .+..+.+.|+
T Consensus        51 la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~--~~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~Lk  128 (245)
T d1nkva_          51 WARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG--YVANEKCDVAACVGATWIAGGFAGAEELLAQSLK  128 (245)
T ss_dssp             HHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT--CCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEE
T ss_pred             HHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh--ccccCceeEEEEEehhhccCCHHHHHHHHHHHcC
Confidence            55667899999994 4444443    345543211111111111  1345679988854331     1  1677899999


Q ss_pred             CCcEEEEe
Q 048785          194 ENGKVIDL  201 (280)
Q Consensus       194 ~~g~~v~~  201 (280)
                      |+|+++..
T Consensus       129 PGG~l~i~  136 (245)
T d1nkva_         129 PGGIMLIG  136 (245)
T ss_dssp             EEEEEEEE
T ss_pred             cCcEEEEE
Confidence            99998764

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=83.69  E-value=0.3  Score=36.02  Aligned_cols=71  Identities=20%  Similarity=0.243  Sum_probs=46.7

Q ss_pred             hhhhCCCEEEEEec-CCcHHHHHhcCCCeeecCCCCCcccccCCCCCcccEEEECCCC----CC----cccccccccCCc
Q 048785          126 LAKLGNSHVTATCG-ARNIEFVKSLGADEVLDYKTPDGAALKSPSGRKYDAVIHCARG----IP----WSTFEPNLAENG  196 (280)
Q Consensus       126 la~~~G~~Vi~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~v~d~~g~----~~----~~~~~~~l~~~g  196 (280)
                      +++ .|++|++++. +...+.+++.+....+..+...   +. ...+.||+|+.....    +.    +..+.++|++||
T Consensus        60 l~~-~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~---l~-~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG  134 (246)
T d2avna1          60 LQE-RGFEVVLVDPSKEMLEVAREKGVKNVVEAKAED---LP-FPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDG  134 (246)
T ss_dssp             HHT-TTCEEEEEESCHHHHHHHHHHTCSCEEECCTTS---CC-SCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEE
T ss_pred             ccc-cceEEEEeecccccccccccccccccccccccc---cc-cccccccceeeecchhhhhhhHHHHHHHHHhhcCcCc
Confidence            444 5889999995 5677888877766555433222   11 234679999865441    11    667788999999


Q ss_pred             EEEEe
Q 048785          197 KVIDL  201 (280)
Q Consensus       197 ~~v~~  201 (280)
                      .++..
T Consensus       135 ~~ii~  139 (246)
T d2avna1         135 LLIAT  139 (246)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88754

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=80.35  E-value=0.27  Score=34.30  Aligned_cols=75  Identities=12%  Similarity=0.107  Sum_probs=48.1

Q ss_pred             hhhhCCCEEEEEecC-CcHHHHHhcCCC--eeecCCCCC-cccccCCCCCcccEEEECCCCC-----C--cccccccccC
Q 048785          126 LAKLGNSHVTATCGA-RNIEFVKSLGAD--EVLDYKTPD-GAALKSPSGRKYDAVIHCARGI-----P--WSTFEPNLAE  194 (280)
Q Consensus       126 la~~~G~~Vi~~~~~-~~~~~~~~~g~~--~v~~~~~~~-~~~~~~~~~~~~d~v~d~~g~~-----~--~~~~~~~l~~  194 (280)
                      .|+.+|++|.+.+.+ ++++.+++....  .....+... .+.+     ...|+||.++=-+     .  -+.+++.|++
T Consensus        50 ~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~-----~~aDivI~aalipG~~aP~lIt~~mv~~Mk~  124 (168)
T d1pjca1          50 MAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAV-----AEADLLIGAVLVPGRRAPILVPASLVEQMRT  124 (168)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHH-----HTCSEEEECCCCTTSSCCCCBCHHHHTTSCT
T ss_pred             HHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhh-----ccCcEEEEeeecCCcccCeeecHHHHhhcCC
Confidence            677899999999954 777777654322  111111111 1111     2379999987631     1  4588999999


Q ss_pred             CcEEEEeCCCc
Q 048785          195 NGKVIDLTPTP  205 (280)
Q Consensus       195 ~g~~v~~g~~~  205 (280)
                      ++.++++....
T Consensus       125 GSVIVDvaidq  135 (168)
T d1pjca1         125 GSVIVDVAVDQ  135 (168)
T ss_dssp             TCEEEETTCTT
T ss_pred             CcEEEEeecCC
Confidence            99999996433