Citrus Sinensis ID: 048802

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQHETSHISWSAGYENDNKGLELNKHARAKNVANNIKGESLLVGVGKFGLD
cccccccccEEEccHHccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHccccHHccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccEEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccc
cccccccEEEEEcHHHHHHHHcccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHHHHHcccccHHHccccEEEEccccccccccccccccHHHHHHHHHHcccEEEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccc
rlflpcflNLVYSSFCHhwlsrvptelVSERRIHLLNKRDVClakiynppsvpkvyfdqFESDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEglieesklesfrlgfennaeptlnypvyTLCVEEgrqvmgsegsfnihqhetshiswsagyendnkglelnkHARAKNVANNIKGESLLVGVGKFGLD
RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEESKLESFRLGFennaeptlnyPVYTLCVEEGRQVMGSEGSFNIHQHETSHISWSAGYENDNKGLELNKHARAknvannikgesllvgvgkfgld
RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQHETSHISWSAGYENDNKGLELNKHARAKNVANNIKGESLLVGVGKFGLD
*LFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQHETSHISWSAGY********************NIKGESLLVGVG*****
RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQHETSHISWSAGYENDNKGLELNKHARAKNVANNIKGESLLVGVGKFG**
RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQHETSHISWSAGYENDNKGLELNKHARAKNVANNIKGESLLVGVGKFGLD
RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQHETSHISWSAGY****KGLELNKHARAKNVANNIKGESLLVGVGKF***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSRMVLNFIGNDKYHTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQHETSHISWSAGYENDNKGLELNKHARAKNVANNIKGESLLVGVGKFGLD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query207 2.2.26 [Sep-21-2011]
A4GE70384 3,7-dimethylxanthine N-me N/A no 0.864 0.466 0.381 1e-26
Q8H0D3384 Caffeine synthase 1 OS=Co N/A no 0.864 0.466 0.381 1e-26
Q8H0D2384 3,7-dimethylxanthine N-me N/A no 0.864 0.466 0.371 1e-24
Q9AVL9385 Probable caffeine synthas N/A no 0.869 0.467 0.369 2e-24
Q9AVK1385 Probable caffeine synthas N/A no 0.869 0.467 0.369 7e-24
Q9AVK0372 7-methylxanthosine syntha N/A no 0.840 0.467 0.367 2e-22
A4GE69372 7-methylxanthosine syntha N/A no 0.840 0.467 0.367 2e-22
Q8H0G0384 Theobromine synthase 2 OS N/A no 0.922 0.497 0.345 1e-20
Q9FYZ9364 Benzoate carboxyl methylt N/A no 0.710 0.403 0.366 3e-20
Q84PP7384 Monomethylxanthine methyl N/A no 0.922 0.497 0.345 4e-20
>sp|A4GE70|DXMT1_COFCA 3,7-dimethylxanthine N-methyltransferase OS=Coffea canephora GN=DXMT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/202 (38%), Positives = 118/202 (58%), Gaps = 23/202 (11%)

Query: 1   RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQF 60
           RLF    ++ ++S +C HWLS+VP+ LV+E  I + NK  +  +K   PP + K Y DQF
Sbjct: 143 RLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISV-NKGCIYSSKASRPP-IQKAYLDQF 200

Query: 61  ESDFTSFLKFWSEELKTGSRMVLNFI-GNDKY-HTGIFELLGMVLNDMVSEGLIEESKLE 118
             DFT+FL+  SEEL +  RM+L FI   D++ H    +LL M +ND+V EG +EE KL+
Sbjct: 201 TKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLD 260

Query: 119 SFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQHETSHISWSAGY--ENDNKG 176
           SF            N P+Y    EE ++++  EGSF I   ET +  + AG+  ++D +G
Sbjct: 261 SF------------NVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQG 308

Query: 177 -----LELNKHARAKNVANNIK 193
                +  ++HARA +VA+ ++
Sbjct: 309 RSHSPVSCDEHARAAHVASVVR 330
Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine to theobromine and of theobromine to caffeine, but no sequential conversion of 7-methylxanthine to caffeine was detected.
Coffea canephora (taxid: 49390)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 6EC: 0
>sp|Q8H0D3|CCS1_COFAR Caffeine synthase 1 OS=Coffea arabica GN=CCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q8H0D2|DXMT1_COFAR 3,7-dimethylxanthine N-methyltransferase OS=Coffea arabica GN=DXMT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9AVL9|CS4_COFAR Probable caffeine synthase 4 OS=Coffea arabica GN=CS4 PE=2 SV=1 Back     alignment and function description
>sp|Q9AVK1|CS3_COFAR Probable caffeine synthase 3 OS=Coffea arabica GN=CS3 PE=2 SV=1 Back     alignment and function description
>sp|Q9AVK0|XMT1_COFAR 7-methylxanthosine synthase 1 OS=Coffea arabica GN=XMT1 PE=1 SV=1 Back     alignment and function description
>sp|A4GE69|XMT1_COFCA 7-methylxanthosine synthase 1 OS=Coffea canephora GN=XMT1 PE=1 SV=1 Back     alignment and function description
>sp|Q8H0G0|CTS2_COFAR Theobromine synthase 2 OS=Coffea arabica GN=CTS2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FYZ9|BAMT_ANTMA Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1 Back     alignment and function description
>sp|Q84PP7|MXMT2_COFAR Monomethylxanthine methyltransferase 2 OS=Coffea arabica GN=MXMT2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query207
255587698 310 Benzoate carboxyl methyltransferase, put 0.884 0.590 0.433 3e-33
255587606 375 Jasmonate O-methyltransferase, putative 0.922 0.509 0.398 9e-30
58201426 332 SAMT [Petunia nyctaginiflora] 0.797 0.496 0.408 4e-26
209956793 380 S-adenosyl-L-methionine:salicylic acid c 0.893 0.486 0.410 4e-26
255561060 366 Benzoate carboxyl methyltransferase, put 0.893 0.505 0.399 2e-25
356506834273 PREDICTED: monomethylxanthine methyltran 0.859 0.652 0.369 2e-25
357508481 365 Jasmonate O-methyltransferase [Medicago 0.893 0.506 0.359 4e-25
134303375 319 salicylic acid/benzoic acid carboxyl met 0.797 0.517 0.403 4e-25
359745165 384 N-methyltransferase [Coffea arabica] 0.864 0.466 0.381 4e-25
334305745 384 RecName: Full=3,7-dimethylxanthine N-met 0.864 0.466 0.381 6e-25
>gi|255587698|ref|XP_002534362.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis] gi|223525428|gb|EEF28019.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/212 (43%), Positives = 123/212 (58%), Gaps = 29/212 (13%)

Query: 1   RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQF 60
           RLFLP  L+ V+SS+  HW S VP       +I L NK ++ +AK  +PPSV K Y DQF
Sbjct: 85  RLFLPHSLHFVHSSYSLHWCSEVP-------KIPL-NKGNIYVAKT-SPPSVHKAYLDQF 135

Query: 61  ESDFTSFLKFWSEELKTGSRMVLNFIG-------NDKYHTGIFELLGMVLNDMVSEGLIE 113
           E DF +FL+  S E+  G +MV+  IG       +DKY   I+EL G++LNDMVSEGLIE
Sbjct: 136 ERDFNTFLRSRSAEVIPGGQMVITIIGRDKDMDQSDKYSPTIWELFGIILNDMVSEGLIE 195

Query: 114 ESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQHETSHISWSAGYEND 173
           ESKL+SF            N P+Y    EE + V+ +EGSFNI++ E+ HI W A  ++ 
Sbjct: 196 ESKLDSF------------NIPLYAASAEEVKNVIEAEGSFNINRLESFHIGWDASIDDH 243

Query: 174 NKGLELNKHARAKNVANNIKGESLLVGVGKFG 205
            K   ++KH R   VAN  +  S  +    FG
Sbjct: 244 YKA-SMDKHTRGMWVANCFRAASESILTHHFG 274

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255587606|ref|XP_002534327.1| Jasmonate O-methyltransferase, putative [Ricinus communis] gi|223525486|gb|EEF28055.1| Jasmonate O-methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|58201426|gb|AAW66834.1| SAMT [Petunia nyctaginiflora] Back     alignment and taxonomy information
>gi|209956793|gb|ABU88887.2| S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase [Chimonanthus praecox] Back     alignment and taxonomy information
>gi|255561060|ref|XP_002521542.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis] gi|223539220|gb|EEF40813.1| Benzoate carboxyl methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356506834|ref|XP_003522180.1| PREDICTED: monomethylxanthine methyltransferase 2-like, partial [Glycine max] Back     alignment and taxonomy information
>gi|357508481|ref|XP_003624529.1| Jasmonate O-methyltransferase [Medicago truncatula] gi|355499544|gb|AES80747.1| Jasmonate O-methyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|134303375|gb|ABO71017.1| salicylic acid/benzoic acid carboxyl methyltransferase [Protoschwenkia mandonii] Back     alignment and taxonomy information
>gi|359745165|gb|AEV57593.1| N-methyltransferase [Coffea arabica] Back     alignment and taxonomy information
>gi|334305745|sp|A4GE70.1|DXMT1_COFCA RecName: Full=3,7-dimethylxanthine N-methyltransferase; Short=DXMT gi|146386465|pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase gi|90110982|gb|ABD90686.1| 3,7-dimethylxanthine methyltransferase [Coffea canephora] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query207
TAIR|locus:2080747379 BSMT1 [Arabidopsis thaliana (t 0.859 0.469 0.349 2.5e-20
TAIR|locus:2154845354 AT5G66430 [Arabidopsis thalian 0.893 0.522 0.356 2.2e-19
TAIR|locus:2013149389 JMT "jasmonic acid carboxyl me 0.753 0.401 0.379 5.8e-18
TAIR|locus:2179929415 NAMT1 [Arabidopsis thaliana (t 0.869 0.433 0.349 4.5e-17
TAIR|locus:2144466368 AT5G38020 [Arabidopsis thalian 0.676 0.380 0.369 1e-16
TAIR|locus:2095572368 AT3G21950 [Arabidopsis thalian 0.676 0.380 0.363 1.7e-16
TAIR|locus:2179969385 AT5G04380 "AT5G04380" [Arabido 0.893 0.480 0.317 2.7e-15
TAIR|locus:2115400371 AT4G36470 [Arabidopsis thalian 0.888 0.495 0.307 1.1e-14
TAIR|locus:2053458359 AT2G14060 [Arabidopsis thalian 0.811 0.467 0.333 1.6e-14
TAIR|locus:504956193351 AT1G15125 [Arabidopsis thalian 0.700 0.413 0.309 3.2e-08
TAIR|locus:2080747 BSMT1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 242 (90.2 bits), Expect = 2.5e-20, P = 2.5e-20
 Identities = 74/212 (34%), Positives = 108/212 (50%)

Query:     1 RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQF 60
             RLF    L+L++SS+  HWLS+VP +L +       NK ++ +    +P S  K Y +QF
Sbjct:   159 RLFSRNSLHLIHSSYALHWLSKVPEKLEN-------NKGNLYITSS-SPQSAYKAYLNQF 210

Query:    61 ESDFTSFLKFWSEELKTGSRMVLNFIG----NDKYHTG---IFELLGMVLNDMVSEGLIE 113
             + DFT FL+  SEE+ +  RMVL FIG    ND  +      + LL   L D+V EGL+ 
Sbjct:   211 QKDFTMFLRLRSEEIVSNGRMVLTFIGRNTLNDPLYRDCCHFWTLLSNSLRDLVFEGLVS 270

Query:   114 ESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQHETSHISWSAGYEND 173
             ESKL++F            N P Y   V+E ++V+  EGSF I++ E+        YE D
Sbjct:   271 ESKLDAF------------NMPFYDPNVQELKEVIQKEGSFEINELESHGFDLGHYYEED 318

Query:   174 NKGLELNKHARAKNVANNIKGESLLVGVGKFG 205
             +           +N AN I+  S  + +  FG
Sbjct:   319 D-------FEAGRNEANGIRAVSEPMLIAHFG 343
GO:0005634 "nucleus" evidence=ISM
GO:0008168 "methyltransferase activity" evidence=IEA
GO:0006952 "defense response" evidence=IEP
GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0051707 "response to other organism" evidence=IEP
GO:0052624 "2-phytyl-1,4-naphthoquinone methyltransferase activity" evidence=IDA
GO:0080150 "S-adenosyl-L-methionine:benzoic acid carboxyl methyl transferase activity" evidence=IDA
GO:0009620 "response to fungus" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
TAIR|locus:2154845 AT5G66430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013149 JMT "jasmonic acid carboxyl methyltransferase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179929 NAMT1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144466 AT5G38020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095572 AT3G21950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179969 AT5G04380 "AT5G04380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115400 AT4G36470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053458 AT2G14060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956193 AT1G15125 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
pfam03492331 pfam03492, Methyltransf_7, SAM dependent carboxyl 7e-41
PLN02668386 PLN02668, PLN02668, indole-3-acetate carboxyl meth 4e-14
>gnl|CDD|217591 pfam03492, Methyltransf_7, SAM dependent carboxyl methyltransferase Back     alignment and domain information 
 Score =  141 bits (357), Expect = 7e-41
 Identities = 74/212 (34%), Positives = 108/212 (50%), Gaps = 34/212 (16%)

Query: 1   RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQF 60
           RLF    L+ V+SS+  HWLS+VP   + ++     NK ++ ++    P  V K Y DQF
Sbjct: 98  RLFPRNSLHFVHSSYSLHWLSQVPKG-LEDKESPAWNKGNIYISGAS-PEEVYKAYLDQF 155

Query: 61  ESDFTSFLKFWSEELKTGSRMVLNFIG---NDKYHTG---IFELLGMVLNDMVSEGLIEE 114
           + DF+ FL+  +EEL +G  MVL F+G    D   T     ++LLG  LND+VSEGLIEE
Sbjct: 156 KKDFSLFLRARAEELVSGGLMVLTFLGRPSVDPSETECGIFWDLLGDALNDLVSEGLIEE 215

Query: 115 SKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNI-----HQHETSHISWSAG 169
            KL+SF            N P+Y    EE ++++  EGSF I      +H    + W   
Sbjct: 216 EKLDSF------------NIPIYAPSPEEVKEIIEKEGSFTIERLEIIKHPNGEVPWDES 263

Query: 170 YENDNKGLELNKHARAKNVANNIKG--ESLLV 199
              D       K    + VA++++   E +LV
Sbjct: 264 DSED-------KVEDGRFVASSVRAVVEPMLV 288

This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesised through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyzes the second step to produce theobromine. Length = 331
>gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 207
PLN02668386 indole-3-acetate carboxyl methyltransferase 100.0
PF03492334 Methyltransf_7: SAM dependent carboxyl methyltrans 100.0
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 95.37
TIGR02072240 BioC biotin biosynthesis protein BioC. This enzyme 94.16
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 93.99
PLN02233261 ubiquinone biosynthesis methyltransferase 93.73
TIGR00740239 methyltransferase, putative. A simple BLAST search 93.15
PF0824195 Methyltransf_11: Methyltransferase domain; InterPr 93.04
PRK11036255 putative S-adenosyl-L-methionine-dependent methylt 92.0
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 91.93
PLN02232160 ubiquinone biosynthesis methyltransferase 90.93
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 89.74
KOG1540296 consensus Ubiquinone biosynthesis methyltransferas 87.38
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 86.92
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 84.99
PRK06922677 hypothetical protein; Provisional 84.15
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 83.65
PRK10258251 biotin biosynthesis protein BioC; Provisional 82.41
PLN02244340 tocopherol O-methyltransferase 80.75
>PLN02668 indole-3-acetate carboxyl methyltransferase Back     alignment and domain information 
Probab=100.00  E-value=2.5e-60  Score=438.12  Aligned_cols=184  Identities=28%  Similarity=0.450  Sum_probs=169.9

Q ss_pred             CCcCCCccceeecccccccccCCCccccchhcccccccccEEEeccCCCccHHHHHHHHHHHHHHHHHhhcccccccCce
Q 048802            1 RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSR   80 (207)
Q Consensus         1 RLfP~~Slh~~~Ss~alHWLS~vP~~l~~~~~s~~~Nkg~i~~~~~~s~~~v~~ay~~Qf~~D~~~FL~~Ra~EL~~GG~   80 (207)
                      ||||++||||+|||||||||||||+++.+ ++|++||||+||++++ + |+|.+||++||++||+.||++||+||||||+
T Consensus       156 RLfP~~Slh~~~Ss~slHWLS~vP~~l~d-~~s~~~Nkg~iyi~~~-s-~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~  232 (386)
T PLN02668        156 RLFPARSIDVFHSAFSLHWLSQVPESVTD-KRSAAYNKGRVFIHGA-S-ESTANAYKRQFQADLAGFLRARAQEMKRGGA  232 (386)
T ss_pred             cccCCCceEEEEeeccceecccCchhhcc-CCcccccCCceEecCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence            89999999999999999999999999986 8889999999999998 4 8899999999999999999999999999999


Q ss_pred             EEEEeecCC---Cc----cccHHHH-HHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCHHHHHhhhccCC
Q 048802           81 MVLNFIGND---KY----HTGIFEL-LGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEG  152 (207)
Q Consensus        81 mvl~~~g~~---~~----~~~~~~~-l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~eEv~~~i~~~g  152 (207)
                      |||+++||+   ++    .+.+|++ |+++|+|||+||+|++||+|+|            |+|+|+||+||++++|+++|
T Consensus       233 mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsF------------niP~Y~ps~eEv~~~Ie~~g  300 (386)
T PLN02668        233 MFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSF------------NIPVYAPSLQDFKEVVEANG  300 (386)
T ss_pred             EEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcc------------cCcccCCCHHHHHHHHhhcC
Confidence            999999996   22    2446777 9999999999999999999999            99999999999999999999


Q ss_pred             ceEEeEEeeeecccCCCCCCCcccchhhhhHHHHHHHHhcc--cccccccCCCCCC
Q 048802          153 SFNIHQHETSHISWSAGYENDNKGLELNKHARAKNVANNIK--GESLLVGVGKFGL  206 (207)
Q Consensus       153 sF~I~~~E~~~~~w~~~~~~~~~~~~~~~~~~~~~va~~iR--~Epll~~~~hFG~  206 (207)
                      ||+|+++|+++..|+.+ .+.    ..|....|+++|+++|  +||||++  |||+
T Consensus       301 sF~I~~le~~~~~~~~~-~~~----~~d~~~~g~~~a~~~RA~~E~ll~~--HFG~  349 (386)
T PLN02668        301 SFAIDKLEVFKGGSPLV-VNE----PDDAAEVGRAMANSCRSVAGVLVDA--HIGE  349 (386)
T ss_pred             CEEeeeeEEeeccCccc-ccC----cccHHHHHHHHHHHHHHHHHHHHHH--HcCH
Confidence            99999999999999875 322    2356778999999999  9999999  9996

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>TIGR02072 BioC biotin biosynthesis protein BioC Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PLN02232 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>PRK06922 hypothetical protein; Provisional Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PRK10258 biotin biosynthesis protein BioC; Provisional Back     alignment and domain information
>PLN02244 tocopherol O-methyltransferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
2efj_A384 The Structure Of 1,7 Dimethylxanthine Methyltransfe 1e-27
2eg5_A372 The Structure Of Xanthosine Methyltransferase Lengt 2e-23
1m6e_X359 Crystal Structure Of Salicylic Acid Carboxyl Methyl 2e-19
3b5i_A374 Crystal Structure Of Indole-3-Acetic Acid Methyltra 1e-10
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase Length = 384 Back     alignment and structure 
Iteration: 1

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/202 (38%), Positives = 118/202 (58%), Gaps = 23/202 (11%)
Query: 1   RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQF 60
           RLF    ++ ++S +C HWLS+VP+ LV+E  I + NK  +  +K   PP + K Y DQF
Sbjct: 143 RLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISV-NKGCIYSSKASRPP-IQKAYLDQF 200
Query: 61  ESDFTSFLKFWSEELKTGSRMVLNFI-GNDKY-HTGIFELLGMVLNDMVSEGLIEESKLE 118
             DFT+FL+  SEEL +  RM+L FI   D++ H    +LL M +ND+V EG +EE KL+
Sbjct: 201 TKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLD 260
Query: 119 SFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQHETSHISWSAGY--ENDNKG 176
           SF            N P+Y    EE ++++  EGSF I   ET +  + AG+  ++D +G
Sbjct: 261 SF------------NVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQG 308
Query: 177 -----LELNKHARAKNVANNIK 193
                +  ++HARA +VA+ ++
Sbjct: 309 RSHSPVSCDEHARAAHVASVVR 330
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase Length = 372 Back     alignment and structure
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl Methyltransferase (Samt) Length = 359 Back     alignment and structure
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid Methyltransferase Length = 374 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
2efj_A384 3,7-dimethylxanthine methyltransferase; SAM-depend 3e-34
1m6e_X359 S-adenosyl-L-methionnine:salicylic acid carboxyl m 4e-31
3b5i_A374 S-adenosyl-L-methionine:salicylic acid carboxyl me 3e-29
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* Length = 384 Back     alignment and structure
 Score =  124 bits (311), Expect = 3e-34
 Identities = 75/210 (35%), Positives = 115/210 (54%), Gaps = 25/210 (11%)

Query: 1   RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQF 60
           RLF    ++ ++S +C HWLS+VP+ LV+E  I + NK  +  +K  + P + K Y DQF
Sbjct: 143 RLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISV-NKGCIYSSK-ASRPPIQKAYLDQF 200

Query: 61  ESDFTSFLKFWSEELKTGSRMVLNFIGNDKYH--TGIFELLGMVLNDMVSEGLIEESKLE 118
             DFT+FL+  SEEL +  RM+L FI  +         +LL M +ND+V EG +EE KL+
Sbjct: 201 TKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLD 260

Query: 119 SFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQHETSHISWSAGYEND----- 173
           SF            N P+Y    EE ++++  EGSF I   ET +  + AG+  D     
Sbjct: 261 SF------------NVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQG 308

Query: 174 --NKGLELNKHARAKNVANNIKG--ESLLV 199
             +  +  ++HARA +VA+ ++   E +L 
Sbjct: 309 RSHSPVSCDEHARAAHVASVVRSIYEPILA 338
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Length = 359 Back     alignment and structure
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} Length = 374 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query207
2efj_A384 3,7-dimethylxanthine methyltransferase; SAM-depend 100.0
1m6e_X359 S-adenosyl-L-methionnine:salicylic acid carboxyl m 100.0
3b5i_A374 S-adenosyl-L-methionine:salicylic acid carboxyl me 100.0
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 96.4
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 96.12
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 95.92
2p35_A259 Trans-aconitate 2-methyltransferase; SAM dependent 95.76
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 95.08
2yqz_A263 Hypothetical protein TTHA0223; RNA methyltransfera 94.78
2g72_A289 Phenylethanolamine N-methyltransferase; HET: SAM F 94.62
3hnr_A220 Probable methyltransferase BT9727_4108; structural 94.57
3dtn_A234 Putative methyltransferase MM_2633; structural gen 94.32
2a14_A263 Indolethylamine N-methyltransferase; SGC,INMT, str 94.1
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 94.04
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 93.87
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 93.59
3bgv_A313 MRNA CAP guanine-N7 methyltransferase; alternative 93.43
2p7i_A250 Hypothetical protein; putative methyltransferase, 92.95
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 92.76
3lcc_A235 Putative methyl chloride transferase; halide methy 92.75
3cc8_A230 Putative methyltransferase; structural genomics, j 92.42
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 92.13
1ri5_A298 MRNA capping enzyme; methyltransferase, M7G, messe 91.88
1vl5_A260 Unknown conserved protein BH2331; putative methylt 91.86
2ld4_A176 Anamorsin; methyltransferase-like fold, alpha/beta 91.64
1xxl_A239 YCGJ protein; structural genomics, protein structu 90.88
1vlm_A219 SAM-dependent methyltransferase; possible histamin 90.38
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 90.26
3dh0_A219 SAM dependent methyltransferase; cystal structure, 89.53
2i62_A265 Nicotinamide N-methyltransferase; structural genom 89.52
4hg2_A257 Methyltransferase type 11; structural genomics, PS 88.49
2gs9_A211 Hypothetical protein TT1324; methyl transferase, s 87.4
2gb4_A252 Thiopurine S-methyltransferase; 18204406, thiopuri 86.66
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 86.52
2ex4_A241 Adrenal gland protein AD-003; methyltransferase, s 86.45
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 86.03
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 85.88
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 85.6
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 85.03
2zfu_A215 Nucleomethylin, cerebral protein 1; nucleolar prot 83.3
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 82.82
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 81.46
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 81.19
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 81.0
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 80.59
4e2x_A 416 TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s 80.5
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 80.06
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-52  Score=385.06  Aligned_cols=191  Identities=40%  Similarity=0.664  Sum_probs=164.2

Q ss_pred             CCcCCCccceeecccccccccCCCccccchhcccccccccEEEeccCCCccHHHHHHHHHHHHHHHHHhhcccccccCce
Q 048802            1 RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSR   80 (207)
Q Consensus         1 RLfP~~Slh~~~Ss~alHWLS~vP~~l~~~~~s~~~Nkg~i~~~~~~s~~~v~~ay~~Qf~~D~~~FL~~Ra~EL~~GG~   80 (207)
                      ||||++|+||+||++||||||++|+.+.+ +.|++||||+||++++ +||+|.+||++||++||+.||++|++||||||+
T Consensus       143 rlfp~~S~d~v~Ss~aLHWls~~p~~l~~-~~s~~~nkg~i~i~~~-sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~  220 (384)
T 2efj_A          143 RLFPEESMHFLHSCYCLHWLSQVPSGLVT-ELGISVNKGCIYSSKA-SRPPIQKAYLDQFTKDFTTFLRIHSEELISRGR  220 (384)
T ss_dssp             CCSCTTCEEEEEEESCTTBCSSSCCC-------CCCCTTCSSSCTT-SCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred             ccCCCCceEEEEecceeeecCCCchhhhc-cccccccCCceEecCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCe
Confidence            89999999999999999999999999997 6889999999999999 999999999999999999999999999999999


Q ss_pred             EEEEeecCCCc--cccHHHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCHHHHHhhhccCCceEEeE
Q 048802           81 MVLNFIGNDKY--HTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQ  158 (207)
Q Consensus        81 mvl~~~g~~~~--~~~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~eEv~~~i~~~gsF~I~~  158 (207)
                      ||++++|++..  ....-++|.++|++||.||+|+++|+|+|            |+|+|+||++|++++|+++|+|+|++
T Consensus       221 mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf------------~~P~y~ps~~E~~~~le~~g~F~i~~  288 (384)
T 2efj_A          221 MLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSF------------NVPIYAPSTEEVKRIVEEEGSFEILY  288 (384)
T ss_dssp             EEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTC------------CCSBCCCCHHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhccc------------CCcccCCCHHHHHHHHHHcCCceEEE
Confidence            99999999732  11122499999999999999999999999            99999999999999999999999999


Q ss_pred             EeeeecccCCCCC-CCc----ccch--hhhhHHHHHHHHhcc--cccccccCCCCCCC
Q 048802          159 HETSHISWSAGYE-NDN----KGLE--LNKHARAKNVANNIK--GESLLVGVGKFGLD  207 (207)
Q Consensus       159 ~E~~~~~w~~~~~-~~~----~~~~--~~~~~~~~~va~~iR--~Epll~~~~hFG~~  207 (207)
                      +|+++..|+++.. ++.    .+..  .|....|+++|+++|  .||+|++  |||++
T Consensus       289 le~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~a~~iRa~~epll~~--hfG~~  344 (384)
T 2efj_A          289 LETFNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILAS--HFGEA  344 (384)
T ss_dssp             EEEEEEETTTTCCC---------CCSHHHHHHHHHHHHHHHHHHHHHHHHH--HHCST
T ss_pred             EEEEeecccccccccccccccccccccchHhHhHHHhhhhhHHhhhhhhHH--hccHH
Confidence            9999999987510 210    0000  145689999999999  8999999  99974
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Back     alignment and structure
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Back     alignment and structure
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* Back     alignment and structure
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} Back     alignment and structure
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Back     alignment and structure
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 207
d1m6ex_359 c.66.1.35 (X:) Salicylic acid carboxyl methyltrans 4e-35
>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} Length = 359 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

 Score =  125 bits (314), Expect = 4e-35
 Identities = 72/207 (34%), Positives = 102/207 (49%), Gaps = 30/207 (14%)

Query: 1   RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQF 60
           RLF    L+ ++SS+   WLS+VP  + S       NK ++ +A    P SV   Y+ QF
Sbjct: 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIES-------NKGNIYMANTC-PQSVLNAYYKQF 184

Query: 61  ESDFTSFLKFWSEELKTGSRMVLNFIG---NDKYHTG---IFELLGMVLNDMVSEGLIEE 114
           + D   FL+  ++E+  G RMVL  +G    D+  T    I++LL M LN MVSEGLIEE
Sbjct: 185 QEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEE 244

Query: 115 SKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSFNIHQHETSHISWSAGYENDN 174
            K++ F            N P YT    E    +  EGSF I   E S I WS+  ++ +
Sbjct: 245 EKMDKF------------NIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGD 292

Query: 175 KGLELNKHARAKNVANNIKG--ESLLV 199
            G   +      NVA  ++   E LL+
Sbjct: 293 GG--GSVEEEGYNVARCMRAVAEPLLL 317

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query207
d1m6ex_359 Salicylic acid carboxyl methyltransferase (SAMT) { 100.0
d2a14a1257 Indolethylamine N-methyltransferase, INMT {Human ( 97.15
d2g72a1263 Phenylethanolamine N-methyltransferase, PNMTase {H 96.76
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 95.1
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 94.8
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 93.97
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 93.73
d1xtpa_254 Hypothetical protein Lmaj004091aaa (LmjF30.0810) { 91.29
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 89.92
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 88.05
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 85.92
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 84.17
d2bzga1229 Thiopurine S-methyltransferase {Human (Homo sapien 82.38
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 80.03
>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=100.00  E-value=9.6e-60  Score=427.06  Aligned_cols=182  Identities=39%  Similarity=0.594  Sum_probs=169.3

Q ss_pred             CCcCCCccceeecccccccccCCCccccchhcccccccccEEEeccCCCccHHHHHHHHHHHHHHHHHhhcccccccCce
Q 048802            1 RLFLPCFLNLVYSSFCHHWLSRVPTELVSERRIHLLNKRDVCLAKIYNPPSVPKVYFDQFESDFTSFLKFWSEELKTGSR   80 (207)
Q Consensus         1 RLfP~~Slh~~~Ss~alHWLS~vP~~l~~~~~s~~~Nkg~i~~~~~~s~~~v~~ay~~Qf~~D~~~FL~~Ra~EL~~GG~   80 (207)
                      ||||++||||+|||||||||||||+++.+       |||+||++++ +|++|.+||++||++||++||++||+||+|||+
T Consensus       133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~-------n~~~i~~~~~-~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~  204 (359)
T d1m6ex_         133 RLFPRNTLHFIHSSYSLMWLSQVPIGIES-------NKGNIYMANT-CPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGR  204 (359)
T ss_dssp             CCSCTTCBSCEEEESCTTBCSSCCSCCCC-------CTTTTSSCSS-SCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCE
T ss_pred             hcCCCCceEEeeehhhhhhhhcCCccccC-------CCCcEEEcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence            89999999999999999999999999987       9999999998 899999999999999999999999999999999


Q ss_pred             EEEEeecCCC---c---cccHHHHHHHHHHHHHHcCCCchhhhhccccccccCCCCCccccccccCHHHHHhhhccCCce
Q 048802           81 MVLNFIGNDK---Y---HTGIFELLGMVLNDMVSEGLIEESKLESFRLGFENNAEPTLNYPVYTLCVEEGRQVMGSEGSF  154 (207)
Q Consensus        81 mvl~~~g~~~---~---~~~~~~~l~~~l~dmv~eGlI~eek~dsF~~~~~~~~~~~~n~P~Y~~s~eEv~~~i~~~gsF  154 (207)
                      |||+++||+.   +   .+.+|++|+++|+|||.||+|++||+|+|            |+|+|+||+||++++|+++|+|
T Consensus       205 mvl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsf------------n~P~Y~ps~eEv~~~ie~~gsF  272 (359)
T d1m6ex_         205 MVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKF------------NIPQYTPSPTEVEAEILKEGSF  272 (359)
T ss_dssp             EEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGG------------CCCCBCCCSHHHHHHHHHTTTB
T ss_pred             EEEEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhc------------cCccccCCHHHHHHHhccCCCe
Confidence            9999999972   2   46789999999999999999999999999            9999999999999999999999


Q ss_pred             EEeEEeeeecccCCCCCCCcccchhhhhHHHHHHHHhcc--cccccccCCCCCC
Q 048802          155 NIHQHETSHISWSAGYENDNKGLELNKHARAKNVANNIK--GESLLVGVGKFGL  206 (207)
Q Consensus       155 ~I~~~E~~~~~w~~~~~~~~~~~~~~~~~~~~~va~~iR--~Epll~~~~hFG~  206 (207)
                      +|+++|+++.+|+++.++.  +...+...+|+++|+++|  +||+|++  |||+
T Consensus       273 ~i~~~e~~~~~~~~~~~~~--~~~~d~~~~~~~~a~~~RA~~e~~l~~--hfg~  322 (359)
T d1m6ex_         273 LIDHIEASEIYWSSCTKDG--DGGGSVEEEGYNVARCMRAVAEPLLLD--HFGE  322 (359)
T ss_dssp             CCEEEEEEEEETTCCSSCT--TCCSSTTTTTTHHHHHHHHHHHHHHHH--HHCH
T ss_pred             eeeeeEeeecccccccccc--cccccHHHHHHHHHHHHHHHHHHHHHH--HcCh
Confidence            9999999999999873322  223567788999999999  9999999  9996
>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure