Citrus Sinensis ID: 048807
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 757 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LKU8 | 766 | Pentatricopeptide repeat- | yes | no | 0.980 | 0.968 | 0.476 | 0.0 | |
| Q9M316 | 766 | Pentatricopeptide repeat- | yes | no | 0.965 | 0.954 | 0.480 | 0.0 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.615 | 0.612 | 0.322 | 2e-72 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.599 | 0.759 | 0.298 | 6e-72 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.631 | 0.772 | 0.311 | 8e-71 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.715 | 0.860 | 0.300 | 3e-70 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.638 | 0.761 | 0.291 | 4e-70 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.554 | 0.659 | 0.319 | 1e-69 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.692 | 0.717 | 0.288 | 5e-69 | |
| Q9T0D6 | 566 | Pentatricopeptide repeat- | no | no | 0.546 | 0.731 | 0.357 | 6e-69 |
| >sp|Q9LKU8|PP401_ARATH Pentatricopeptide repeat-containing protein At5g28460 OS=Arabidopsis thaliana GN=At5g28460 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/755 (47%), Positives = 505/755 (66%), Gaps = 13/755 (1%)
Query: 4 ILTKQPKFLLKRHHLPLLRHFCTEHNSPLPQVSESS--IIITQALDVLLQTPDNEWTSSP 61
I +Q ++L H LR F + + P P++ S ++ + + L TP ++W SS
Sbjct: 7 ISRRQNSYILLNHS-RFLRRFSYDVD-PRPEIKSESQEFVVVKFVKTLQNTPQHDWASSE 64
Query: 62 QIKNLLFSSTSLSPQLFFQITRRFPSSSRALSFFNFLQSNLPT-EANTSSLSYAYQAVFE 120
+ L+ SS+S SP +F QITRR S S A+SFF +L + + + SLS A Q+V E
Sbjct: 65 SLSALVVSSSSASPLVFSQITRRLGSYSLAISFFEYLDAKSQSLKRREESLSLALQSVIE 124
Query: 121 LAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRN 180
A E + L LY+ K++NIPL+I + LLIR+FG++ M + S+LVY LD+N++N
Sbjct: 125 FAGSEPDPRDKLLRLYEIAKEKNIPLTIVATKLLIRWFGRMGMVNQSVLVYERLDSNMKN 184
Query: 181 THVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTD 240
+ VRNV++DVLLR DAF VLDEML +ES FP N +T DIV + + + + +T+
Sbjct: 185 SQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWK----ERLLTE 240
Query: 241 EELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNAL 300
E+++ L+S+F+ HGV PN+VWLT+ I+ C+ + + AWD+L LMK PLEA NAL
Sbjct: 241 EKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNAL 300
Query: 301 LNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKE 360
L+ LGR D RMN L +M E I P VVT G +IN LCK R DEALEVFE+M GK
Sbjct: 301 LSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQM-RGKR 359
Query: 361 TAEISV-EPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFC 419
T + +V + D I FNTLIDGLCKVG+ +EA L+ +R++L++ C+PNAVTYNCLI+G+C
Sbjct: 360 TDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELL--VRMKLEERCVPNAVTYNCLIDGYC 417
Query: 420 KSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAV 479
++G +E E+ MK++ + PNVVT+NT+V GMCRH +N AV FF ++ ++G+ N V
Sbjct: 418 RAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVV 477
Query: 480 TYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKL 539
TY LI A C+V+N ++A+ W++ M AGCS D+ +Y+ LISGLCQ R +DA VV KL
Sbjct: 478 TYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKL 537
Query: 540 KEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNF 599
KE GF D++ YN LI FC K +K YE+L +ME G P+S+TYNTLISF K +F
Sbjct: 538 KEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDF 597
Query: 600 SAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNI 659
+ R++++M ++GL PTV TYGA+I A+C G +DEA+K+FK++ S V+PNTVIYNI
Sbjct: 598 ESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNI 657
Query: 660 LIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHA 719
LI++ K ALSL EEMK+K VRPN TYNA+FK L +K + KLMD M+E +
Sbjct: 658 LINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQS 717
Query: 720 CHPDYISMEILTEWLSEAGQTEKLKKFVQGYAVSA 754
C P+ I+MEIL E LS + + KL+KF+QGY+V++
Sbjct: 718 CEPNQITMEILMERLSGSDELVKLRKFMQGYSVAS 752
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M316|PP292_ARATH Pentatricopeptide repeat-containing protein At3g61520, mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/743 (48%), Positives = 499/743 (67%), Gaps = 12/743 (1%)
Query: 16 HHLPLLRHFCTEHNSPLPQVSESS--IIITQALDVLLQTPDNEWTSSPQIKNLLFSSTSL 73
+H LR F + + P P++ S ++ + + L +TP ++W SS + L+ SS+S
Sbjct: 18 NHSRFLRRFSYDVD-PRPEIKLESQEFVVVKFVKTLQKTPQHDWASSESLSALVVSSSSA 76
Query: 74 SPQLFFQITRRFPSSSRALSFFNFLQSNLPT-EANTSSLSYAYQAVFELAIRERMSPESL 132
SP +F QITRR S S A+SFF +L + + + SLS A Q+V E A E + L
Sbjct: 77 SPLVFSQITRRLGSYSLAISFFEYLDAKSQSLKRREESLSLALQSVIEFAGSEPDPRDKL 136
Query: 133 FDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLL 192
LY+ K++NIPL++ + LLIR+FG++ M + S+LVY LD+N++N+ VRNV++DVLL
Sbjct: 137 LRLYEIAKEKNIPLTVVATNLLIRWFGRMGMVNQSVLVYERLDSNMKNSQVRNVVVDVLL 196
Query: 193 RCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAE 252
R DAF VLDEML +ES FP N +T DIV + + + +T+E+++ L+S+F+
Sbjct: 197 RNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWK----GRLLTEEKIIALISRFSS 252
Query: 253 HGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKR 312
HGV PN+VWLT+ I+ C+ + + AWD+L LMK PLEA NALL+ LGR D R
Sbjct: 253 HGVSPNSVWLTRFISSLCKNARANAAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISR 312
Query: 313 MNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISV-EPDVI 371
MN L +M E I P VVT G +IN LCK R DEALEVFEKM GK T + +V + D I
Sbjct: 313 MNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEKM-RGKRTDDGNVIKADSI 371
Query: 372 IFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELF 431
FNTLIDGLCKVG+ +EA L+ +R++L++ C PNAVTYNCLI+G+C++G +E E+
Sbjct: 372 HFNTLIDGLCKVGRLKEAEELL--VRMKLEERCAPNAVTYNCLIDGYCRAGKLETAKEVV 429
Query: 432 HLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNV 491
MK++ + PNVVT+NT+V GMCRH +N AV FF ++ ++G+ N VTY LI A C+V
Sbjct: 430 SRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSV 489
Query: 492 NNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCY 551
+N ++A+ W++ M AGCS D+ +Y+ LISGLCQ R +DA VV KLKE GF D++ Y
Sbjct: 490 SNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAY 549
Query: 552 NHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVK 611
N LI FC K +K YE+L +ME G P+S+TYNTLISF K +F + R++++M +
Sbjct: 550 NMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMRE 609
Query: 612 EGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVE 671
+GL PTV TYGA+I A+C G +DEA+K+FK++ S V+PNTVIYNILI++ K
Sbjct: 610 DGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFG 669
Query: 672 LALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILT 731
ALSL EEMK+K VRPN TYNA+FK L +K + KLMD M+E +C P+ I+MEIL
Sbjct: 670 QALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILM 729
Query: 732 EWLSEAGQTEKLKKFVQGYAVSA 754
E LS + + KL+KF+QGY+V++
Sbjct: 730 ERLSGSDELVKLRKFMQGYSVAS 752
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (700), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 165/512 (32%), Positives = 257/512 (50%), Gaps = 46/512 (8%)
Query: 273 GKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTF 332
G +EA + +F + SCN LL+ + G + + F +M P+V T+
Sbjct: 206 GMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTY 265
Query: 333 GTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGL 392
+I+ +CK + A +FE+M + PD + +N++IDG KVG+ ++ +
Sbjct: 266 NIMIDCMCKEGDVEAARGLFEEM------KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCF 319
Query: 393 IEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDG 452
E+M+ C P+ +TYN LIN FCK G + GLE + MK G+ PNVV+ +TLVD
Sbjct: 320 FEEMK---DMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDA 376
Query: 453 MCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSAD 512
C+ G + A++F+ ++ R GL N TYT LI A C + N +A + ++M + G +
Sbjct: 377 FCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWN 436
Query: 513 SVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYE--- 569
V Y LI GLC A RM +A + K+ AG P++ YN LI GF K K +D+A E
Sbjct: 437 VVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLN 496
Query: 570 --------------------------------VLQEMEDIGMTPNSVTYNTLISFLSKSG 597
V+ EM++ G+ NS+ Y TL+ KSG
Sbjct: 497 ELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSG 556
Query: 598 NFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIY 657
N + +L +M + + TVVT+ LI C N V +A+ F +S+ + N I+
Sbjct: 557 NPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIF 616
Query: 658 NILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKG-LRQKNMLDKAFKLMDRMI 716
+ID LCK+NQVE A +L E+M K + P+ Y ++ G +Q N+L+ A L D+M
Sbjct: 617 TAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLE-ALALRDKMA 675
Query: 717 EHACHPDYISMEILTEWLSEAGQTEKLKKFVQ 748
E D ++ L LS Q +K + F++
Sbjct: 676 EIGMKLDLLAYTSLVWGLSHCNQLQKARSFLE 707
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 272 bits (696), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 150/502 (29%), Positives = 255/502 (50%), Gaps = 48/502 (9%)
Query: 241 EELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNAL 300
EE + HG P+ + T LI FCR GKT +A +L + LE +
Sbjct: 119 EEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEI-------LEGSGA--- 168
Query: 301 LNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKE 360
P V+T+ +I+ CK + AL V ++M
Sbjct: 169 -------------------------VPDVITYNVMISGYCKAGEINNALSVLDRM----- 198
Query: 361 TAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK 420
SV PDV+ +NT++ LC GK ++A+ ++++M LQ+ C P+ +TY LI C+
Sbjct: 199 ----SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRM---LQRDCYPDVITYTILIEATCR 251
Query: 421 SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVT 480
+ ++L M+ G TP+VVT N LV+G+C+ GR++ A++F ++ G N +T
Sbjct: 252 DSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVIT 311
Query: 481 YTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLK 540
+ I++ + C+ + +A K DM R G S V + LI+ LC+ G + A ++ K+
Sbjct: 312 HNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMP 371
Query: 541 EAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFS 600
+ G +P+ + YN L+ GFCK+K +D+A E L+ M G P+ VTYNT+++ L K G
Sbjct: 372 QHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVE 431
Query: 601 AARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNIL 660
A +L ++ +G P ++TY +I G +A+K+ E+ + ++ P+T+ Y+ L
Sbjct: 432 DAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM-RAKDLKPDTITYSSL 490
Query: 661 IDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHAC 720
+ L + +V+ A+ E + +RPN T+N++ GL + D+A + MI C
Sbjct: 491 VGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGC 550
Query: 721 HPDYISMEILTEWLSEAGQTEK 742
P+ S IL E L+ G ++
Sbjct: 551 KPNETSYTILIEGLAYEGMAKE 572
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (687), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 152/488 (31%), Positives = 260/488 (53%), Gaps = 10/488 (2%)
Query: 243 LVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLN 302
++G +G+ + +T +I +CRK K A+ VL K + + + L+N
Sbjct: 89 VLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVN 148
Query: 303 ALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETA 362
EG L M E P +VT T+IN LC R EAL + ++M+
Sbjct: 149 GFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMV------ 202
Query: 363 EISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSG 422
E +PD + + +++ LCK G AL L +M R K + V Y+ +I+ CK G
Sbjct: 203 EYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKA---SVVQYSIVIDSLCKDG 259
Query: 423 NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYT 482
+ + L LF+ M+ +G+ +VVT ++L+ G+C G+ + + +E+ + + + VT++
Sbjct: 260 SFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFS 319
Query: 483 ILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEA 542
LI F EA + +++M G + D++ Y +LI G C+ +++A+ + +
Sbjct: 320 ALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSK 379
Query: 543 GFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAA 602
G PDIV Y+ LI+ +CK K +D + +E+ G+ PN++TYNTL+ +SG +AA
Sbjct: 380 GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAA 439
Query: 603 RRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILID 662
+ + ++MV G+ P+VVTYG L+ C NG +++A++IF+++ S ++ IYNI+I
Sbjct: 440 KELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM-QKSRMTLGIGIYNIIIH 498
Query: 663 SLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHP 722
+C ++V+ A SL + K V+P+ TYN M GL +K L +A L +M E C P
Sbjct: 499 GMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTP 558
Query: 723 DYISMEIL 730
D + IL
Sbjct: 559 DDFTYNIL 566
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (682), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 174/579 (30%), Positives = 282/579 (48%), Gaps = 37/579 (6%)
Query: 145 PLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVL 204
P S + + +R F V YDY + N L++ L+ D DA N+
Sbjct: 29 PPSFSHCSFWVRDFSGVR-YDYRKISINRLND---------------LKLD---DAVNLF 69
Query: 205 DEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQ 264
+M+ + FP IV ++ + K + D ++ L + G+ N +
Sbjct: 70 GDMV-KSRPFP------SIVEFSKLLSAIAKMNKFDL-VISLGEQMQNLGISHNLYTYSI 121
Query: 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEND 324
LI FCR+ + A VL +MK + + N+LLN L +M E
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181
Query: 325 IEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVG 384
+P TF T+I+ L + RA EA+ + ++M+ +PD++ + +++GLCK G
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVK------GCQPDLVTYGIVVNGLCKRG 235
Query: 385 KQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVV 444
+ AL L+++M Q P V YN +I+ C N+ L LF M +G+ PNVV
Sbjct: 236 DIDLALSLLKKME---QGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV 292
Query: 445 TLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDM 504
T N+L+ +C +GR + A ++ + + N VT++ LI AF EA K +D+M
Sbjct: 293 TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 352
Query: 505 SRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKML 564
+ D Y +LI+G C R+++A + + P++V YN LI GFCK K +
Sbjct: 353 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRV 412
Query: 565 DKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGAL 624
D+ E+ +EM G+ N+VTY TLI ++ A+ V K+MV +G++P ++TY L
Sbjct: 413 DEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSIL 472
Query: 625 IHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKE 684
+ C NG V+ A+ +F+ L S + P+ YNI+I+ +CK +VE L + +K
Sbjct: 473 LDGLCNNGKVETALVVFEYLQRSK-MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 531
Query: 685 VRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPD 723
V+PN TY M G +K + ++A L M E PD
Sbjct: 532 VKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPD 570
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (680), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 155/531 (29%), Positives = 262/531 (49%), Gaps = 48/531 (9%)
Query: 231 REHVKNSVTDEEL---VGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMK 287
RE ++N + D +L +GL + P+ V +L++ + K D + + +
Sbjct: 54 REILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQR 113
Query: 288 FDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADE 347
+ + N L+N R L +M + EPS+VT +++N C R +
Sbjct: 114 LEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISD 173
Query: 348 ALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN 407
A+ + ++M+ E+ PD I F TLI GL K EA+ L+++M +Q+GC PN
Sbjct: 174 AVALVDQMV------EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM---VQRGCQPN 224
Query: 408 AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQ 467
VTY ++NG CK G+ + L L + M+ + +VV NT++D +C++ ++ A+ F+
Sbjct: 225 LVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFK 284
Query: 468 EVTRKGLCANAVTYTILITAFCNVN----------------------------------- 492
E+ KG+ N VTY+ LI+ C+
Sbjct: 285 EMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEG 344
Query: 493 NFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYN 552
F EA K +DDM + D Y +L++G C R++ A + + PD+V YN
Sbjct: 345 KFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYN 404
Query: 553 HLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE 612
LI GFCK K ++ E+ +EM G+ ++VTY TLI L G+ A++V K+MV +
Sbjct: 405 TLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD 464
Query: 613 GLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVEL 672
G+ P ++TY L+ C NG +++A+++F + S + + IY +I+ +CK +V+
Sbjct: 465 GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE-IKLDIYIYTTMIEGMCKAGKVDD 523
Query: 673 ALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPD 723
L + +K V+PN TYN M GL K +L +A+ L+ +M E P+
Sbjct: 524 GWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPN 574
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (676), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/470 (31%), Positives = 245/470 (52%), Gaps = 50/470 (10%)
Query: 326 EPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK 385
EP+ +TF T+IN LC R EALE+ ++M+ E+ +PD+I NTL++GLC GK
Sbjct: 155 EPNTITFSTLINGLCLEGRVSEALELVDRMV------EMGHKPDLITINTLVNGLCLSGK 208
Query: 386 QEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVT 445
+ EA+ LI++M ++ GC PNAVTY ++N CKSG +EL M++ + + V
Sbjct: 209 EAEAMLLIDKM---VEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 446 LNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMS 505
+ ++DG+C+HG +++A F E+ KG+ N +TY ILI FCN + + K DM
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325
Query: 506 R-----------------------------------AGCSADSVVYFTLISGLCQAGRMN 530
+ G + D++ Y +LI G C+ ++
Sbjct: 326 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 385
Query: 531 DASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLI 590
A+ +V + G P+I +N LI+G+CK +D E+ ++M G+ ++VTYNTLI
Sbjct: 386 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 445
Query: 591 SFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNV 650
+ G + A+ + ++MV + P +VTY L+ C NG ++A++IF+++ S +
Sbjct: 446 QGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSK-M 504
Query: 651 SPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFK 710
+ IYNI+I +C ++V+ A L + +K V+P TYN M GL +K L +A
Sbjct: 505 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAEL 564
Query: 711 LMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQ-----GYAVSAA 755
L +M E PD + IL G K K ++ G++V A+
Sbjct: 565 LFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDAS 614
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (671), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 159/551 (28%), Positives = 287/551 (52%), Gaps = 27/551 (4%)
Query: 185 NVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELV 244
NV++++L+ + + A NV +ML R + P T +V A + ++++
Sbjct: 186 NVVLEILVSGNCHKVAANVFYDMLSR--KIPPTLFTFGVVMKAFCAVNEIDSALS----- 238
Query: 245 GLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNAL 304
L+ +HG PN+V LI + + +EA +L + +A + N ++ L
Sbjct: 239 -LLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGL 297
Query: 305 GREGDFKRMNQ---LFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKET 361
+ F R+N+ + M P +T+G ++N LCK+ R D A ++F ++
Sbjct: 298 CK---FDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRI------ 348
Query: 362 AEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS 421
+P+++IFNTLI G G+ ++A ++ M G +P+ TYN LI G+ K
Sbjct: 349 ----PKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVT--SYGIVPDVCTYNSLIYGYWKE 402
Query: 422 GNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTY 481
G + LE+ H M+ +G PNV + LVDG C+ G+I+ A E++ GL N V +
Sbjct: 403 GLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGF 462
Query: 482 TILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKE 541
LI+AFC + EA++ F +M R GC D + +LISGLC+ + A ++ +
Sbjct: 463 NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 522
Query: 542 AGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSA 601
G + V YN LI+ F ++ + +A +++ EM G + +TYN+LI L ++G
Sbjct: 523 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDK 582
Query: 602 ARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILI 661
AR + +KM+++G P+ ++ LI+ C +G V+EA++ KE+ + +P+ V +N LI
Sbjct: 583 ARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGS-TPDIVTFNSLI 641
Query: 662 DSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACH 721
+ LC+ ++E L++ +++ + + P+T T+N + L + + A L+D IE
Sbjct: 642 NGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFV 701
Query: 722 PDYISMEILTE 732
P++ + IL +
Sbjct: 702 PNHRTWSILLQ 712
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 262 bits (670), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 152/425 (35%), Positives = 230/425 (54%), Gaps = 11/425 (2%)
Query: 298 NALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIA 357
N LL + F + F E K + + V +FG +I C+ A E + F+ +I
Sbjct: 133 NYLLTFVVGSSSFNQWWSFFNENK-SKVVLDVYSFGILIKGCCE---AGEIEKSFDLLI- 187
Query: 358 GKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING 417
E E P+V+I+ TLIDG CK G+ E+A L +M + G + N TY LING
Sbjct: 188 --ELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMG---KLGLVANERTYTVLING 242
Query: 418 FCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCAN 477
K+G ++G E++ M+++GV PN+ T N +++ +C+ GR A + F E+ +G+ N
Sbjct: 243 LFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCN 302
Query: 478 AVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVS 537
VTY LI C EA K D M G + + + Y TLI G C G++ A +
Sbjct: 303 IVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCR 362
Query: 538 KLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSG 597
LK G P +V YN L+SGFC+K A ++++EME+ G+ P+ VTY LI ++S
Sbjct: 363 DLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSD 422
Query: 598 NFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIY 657
N A ++ M + GLVP V TY LIH FC+ G ++EA ++FK + N PN VIY
Sbjct: 423 NMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSM-VEKNCEPNEVIY 481
Query: 658 NILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717
N +I CK AL L++EM+ KE+ PN +Y M + L ++ +A +L+++MI+
Sbjct: 482 NTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMID 541
Query: 718 HACHP 722
P
Sbjct: 542 SGIDP 546
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 757 | ||||||
| 225454300 | 765 | PREDICTED: pentatricopeptide repeat-cont | 0.988 | 0.977 | 0.613 | 0.0 | |
| 224130398 | 775 | predicted protein [Populus trichocarpa] | 0.951 | 0.929 | 0.551 | 0.0 | |
| 356560325 | 746 | PREDICTED: pentatricopeptide repeat-cont | 0.972 | 0.986 | 0.511 | 0.0 | |
| 449443903 | 660 | PREDICTED: pentatricopeptide repeat-cont | 0.788 | 0.904 | 0.569 | 0.0 | |
| 22327132 | 766 | pentatricopeptide repeat-containing prot | 0.980 | 0.968 | 0.476 | 0.0 | |
| 15233137 | 766 | pentatricopeptide repeat-containing prot | 0.965 | 0.954 | 0.480 | 0.0 | |
| 297821008 | 766 | pentatricopeptide repeat-containing prot | 0.969 | 0.958 | 0.481 | 0.0 | |
| 21537126 | 766 | unknown [Arabidopsis thaliana] | 0.980 | 0.968 | 0.472 | 0.0 | |
| 15241779 | 727 | pentatricopeptide repeat-containing prot | 0.944 | 0.983 | 0.470 | 0.0 | |
| 413944227 | 595 | hypothetical protein ZEAMMB73_037126 [Ze | 0.677 | 0.862 | 0.439 | 1e-127 |
| >gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial [Vitis vinifera] gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/765 (61%), Positives = 579/765 (75%), Gaps = 17/765 (2%)
Query: 4 ILTKQPKFL-LKRHHLP-----LLRHFCTEHNSPLPQV---SESSIIITQALDVLLQTPD 54
+ +KQ K L R P LLRH E + P ++SS ++ ++ LLQT D
Sbjct: 7 VSSKQSKLLRFLRPQTPPNLSSLLRHLSAEPDHHPPAPPPQNDSSSVVNLVVE-LLQTTD 65
Query: 55 NEWTSSPQIKNLLFSSTSLSPQL--FFQITRRFPSSSRALSFFNFLQSNLPTEANTSSLS 112
N+W ++ LLF +TS P QITR S+++AL FFN++Q+N P + ++ LS
Sbjct: 66 NDWNED-KLHQLLFPTTSPPPPPHNLLQITRLLGSTAKALKFFNWVQANSPCQ-DSPLLS 123
Query: 113 YAYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYN 172
+ +AVFE A RE S L DL+K K IPLS+N+ATLLIR FG+ M D S LVYN
Sbjct: 124 FTLEAVFEHASREPNSHNKLLDLFKTSKSHKIPLSVNAATLLIRCFGRAQMVDESFLVYN 183
Query: 173 ELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRRE 232
EL + R TH+RN+LIDVL R DA ++LDEML +++FP N TG IVF AL +R+
Sbjct: 184 ELCPSRRLTHIRNILIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRD 243
Query: 233 HVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPL 292
V +V +EE+VGLVSKFAEH VFPN++WLTQLI+R CR G+TD AWDVLH LMK +
Sbjct: 244 KVGRAVDEEEIVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVM 303
Query: 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVF 352
EAASCNALL ALGR +FKRMN L EMKE DI+P+VVTFG +IN LCK R DEALEVF
Sbjct: 304 EAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVF 363
Query: 353 EKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYN 412
EKM G E+ VEPDVI +NTLIDGLCKVG+QEE LGL+E R+R Q CMPN VTYN
Sbjct: 364 EKMNGG-ESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVE--RMRSQPRCMPNTVTYN 420
Query: 413 CLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472
CLI+G+CK+ IE ELF M ++GV PNVVTLNTLVDGMC+HGRIN AVEFF E+ K
Sbjct: 421 CLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGK 480
Query: 473 GLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDA 532
GL NAVTYT LI AFCNVNN ++A++ FD+M AGCS D++VY+TLISGL QAG+++ A
Sbjct: 481 GLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRA 540
Query: 533 SLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISF 592
S V+SK+KEAGF PDIV +N LI+GFC+K LD+AYE+L+EME+ G+ P+ VTYNTLIS
Sbjct: 541 SFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISH 600
Query: 593 LSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSP 652
SK+G+FS A R++KKMVKEGLVPTVVTYGALIHA+C+NG++DEAMKIF+++SS+S V P
Sbjct: 601 FSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPP 660
Query: 653 NTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLM 712
NTVIYNILI+SLC+ NQV+LALSLM++MKVK V+PNTNT+NAMFKGL++KN L KAF+LM
Sbjct: 661 NTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELM 720
Query: 713 DRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGYAVSAAPA 757
DRM EHAC+PDYI+MEILTEWLS G+T KLK FVQGY VSA+ A
Sbjct: 721 DRMTEHACNPDYITMEILTEWLSAVGETAKLKSFVQGYEVSASAA 765
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa] gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/732 (55%), Positives = 555/732 (75%), Gaps = 12/732 (1%)
Query: 34 QVSESSIIITQALDVLLQTPDNEWTSSPQIKNLLFSSTSLSP---QLFFQITRRFPSSSR 90
+ S + IIT+AL LLQ P NEW ++ Q+ LLF+ + S +LF+QITRR PSSS+
Sbjct: 41 KTSNHNSIITEALQ-LLQIPGNEWNTT-QLNQLLFTDSPPSSSSPRLFYQITRRLPSSSQ 98
Query: 91 ALSFFNFLQSNLPTEANTSSL-SYAYQAVFELAIRERMSPESLFDLYKACKDQNIPLSIN 149
AL F N+LQ+N P+ +T SL SY +QA+FELA E S +L LYK K+ NIPL++N
Sbjct: 99 ALKFLNYLQNNSPSSPDTQSLLSYTFQAIFELAFCEPDSNANLSRLYKTSKELNIPLTVN 158
Query: 150 SATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLD 209
+A+ L+R G+ + + SL+++N+LD +++NT++RNV + +LLR +DA V+DEM +
Sbjct: 159 AASFLLRASGRSELVEESLILFNDLDPSVKNTYLRNVWLSILLRSGRVKDALKVIDEMFE 218
Query: 210 R--ESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLIT 267
+S N+ TGDI+F L++RE + ++++E+V LV KF EHGV ++ W+ +LIT
Sbjct: 219 SNDDSNCRPNDATGDILFSFLLKRERNEELLSEDEIVNLVLKFGEHGVLISSFWMGRLIT 278
Query: 268 RFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEP 327
R CR KT+ WD+ ++K A LE+A+CN+LL L REG+F RMN+L +M E DI+P
Sbjct: 279 RLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQP 338
Query: 328 SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISV--EPDVIIFNTLIDGLCKVGK 385
+VVTFG +IN +CK R D+ALEV EKM GKE+ ISV EPDV+I+NTLIDGLCKVG+
Sbjct: 339 NVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGR 398
Query: 386 QEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVT 445
Q+E LGL+E R+R QKGC P+ +TYNCLI+GFCK+G IEKG ELF M +EGV PNVVT
Sbjct: 399 QQEGLGLME--RMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVT 456
Query: 446 LNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMS 505
+NTLV GMCR GR++SAV FF E R+G+ +AVTYT LI AFCNVNNF++A++ F++M
Sbjct: 457 VNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEML 516
Query: 506 RAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLD 565
++GCS D++VY+TLISG QAGRM DAS V+++LK+ G RPD VCYN LI GFC+
Sbjct: 517 KSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFH 576
Query: 566 KAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALI 625
+ +E+L+EME+ G+ P+++TYNTLI++ SK+G+ A++V++KM+K G+VPTV TYGA+I
Sbjct: 577 RVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVI 636
Query: 626 HAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEV 685
+A+C+NG+ +EAM+IFK++ ++S V PNTVIYNILI+SLCKNN+V+ A+SLME+MK+ V
Sbjct: 637 NAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGV 696
Query: 686 RPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKK 745
PNT TYNA+FKGLR + L+K F+ MDRMIEHAC+PDYI+MEILTEWLS G+ E+LKK
Sbjct: 697 TPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIERLKK 756
Query: 746 FVQGYAVSAAPA 757
FV G VS++ A
Sbjct: 757 FVAGCEVSSSTA 768
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/761 (51%), Positives = 522/761 (68%), Gaps = 25/761 (3%)
Query: 3 MILTKQPKFLLKRH---HLPLLRHFCTEHNSPLPQVSESSIIITQALDVLLQTPDNEWTS 59
M + Q K L R H R C N +++ +TQ ++ LLQ P + W
Sbjct: 1 MWMLSQSKPLRSRTYLLHFTRRRCHCNSQN-------DAASAVTQVVE-LLQLPPDHWDH 52
Query: 60 SPQIKNLLFSSTSLSPQLFFQITRRFPSSSRALSFFNFLQSNLPTEANTSSLSYAYQAVF 119
++ ++LF+ + LS F QIT + S ++L F +L + P + + SLS +Q
Sbjct: 53 D-KLHSILFNPSPLSSHHFLQITLQLSSIPKSLQFLKYLSAKAP-QHHPHSLSSVFQGSL 110
Query: 120 ELAIRERMSPESLFDLYKACKDQN--IPLSINSATLLIRFFGKVSMYDYSLLVYNELDNN 177
ELA R S L L++ K + +PL+ SA+LL++ + + SLL++N+LD +
Sbjct: 111 ELASRHPNSQTHLLSLHRFRKSTHPTLPLTPKSASLLLQCLENARLVNDSLLLFNQLDPS 170
Query: 178 LRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNS 237
++ + + L+ VLL+ DA +VLDEM S F V TG+IVF L+R S
Sbjct: 171 SKSPQLCHGLLRVLLKSGRAGDALHVLDEMPQANSGFSV---TGEIVFGELVRS---GRS 224
Query: 238 VTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASC 297
D E+VGLV+K E GVFP+ LTQL+ + C K AW+VLH +M+ ++AASC
Sbjct: 225 FPDGEVVGLVAKLGERGVFPDGFKLTQLVGKLCGDQKNGVAWEVLHCVMRLGGAVDAASC 284
Query: 298 NALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIA 357
NALL LGR D KRMN+L EM++ I PSVVTFG ++N LCK R DEAL+VF+++
Sbjct: 285 NALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRG 344
Query: 358 GKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRL-RLQKGCMPNAVTYNCLIN 416
+ + VEPDV++FNTLIDGLCKVGK+E+ L L+E+M++ + + PN VTYNCLI+
Sbjct: 345 KGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINR---PNTVTYNCLID 401
Query: 417 GFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCA 476
GF K+GN ++ ELF M +EGV PNV+TLNTLVDG+C+HGR++ AVEFF E+ KGL
Sbjct: 402 GFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKG 461
Query: 477 NAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVV 536
NA TYT LI+AFC VNN A++ F++M +GCS D+VVY++LISGLC AGRMNDAS+VV
Sbjct: 462 NAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVV 521
Query: 537 SKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKS 596
SKLK AGF D CYN LISGFCKKK L++ YE+L EME+ G+ P+++TYNTLIS+L K+
Sbjct: 522 SKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKT 581
Query: 597 GNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVI 656
G+F+ A +V++KM+KEGL P+VVTYGA+IHA+C +VDE MKIF E+ S+S V PNTVI
Sbjct: 582 GDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVI 641
Query: 657 YNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMI 716
YNILID+LC+NN V+ A+SLME+MKVK VRPNT TYNA+ KG+R K ML KAF+LMDRM+
Sbjct: 642 YNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMV 701
Query: 717 EHACHPDYISMEILTEWLSEAGQTEKLKKFVQGYAVSAAPA 757
E AC PDYI+ME+LTEWLS G+ EKLK FV+GY S+ PA
Sbjct: 702 EEACRPDYITMEVLTEWLSAVGEIEKLKHFVEGYQDSSYPA 742
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucumis sativus] gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/602 (56%), Positives = 449/602 (74%), Gaps = 5/602 (0%)
Query: 150 SATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLD 209
S+ L+R G++ M D +L ++ LD++ +NT+VRN +I++LL+ +A NVLDEML
Sbjct: 8 SSVHLLRRLGRIGMVDEALAAFSTLDSHAKNTNVRNEIINLLLKSGRVDNAMNVLDEMLL 67
Query: 210 RESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRF 269
ES+F N+ T IVF L++ + ++ V ++E+ GLVSKF +H +FP+ + LTQLI++
Sbjct: 68 PESEFRPNDKTAGIVFNNLLKIDGLEGRVKEDEIAGLVSKFGKHNIFPDTIALTQLISKL 127
Query: 270 CRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSV 329
CR G T+ AW++L LM + +AA CNALL LG+ +F +MN L +MK+ +I+P+V
Sbjct: 128 CRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKMNLLMRKMKDMNIQPTV 187
Query: 330 VTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEA 389
+TFG +IN LCK R D+ALEVFEKM KE ++ V PD I++NTLIDGLCKVG+QEEA
Sbjct: 188 ITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCKVGRQEEA 247
Query: 390 LGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTL 449
L L+ +MR C P T+NCLING+C+SG IE +LF+ M+ + PNV+TLNTL
Sbjct: 248 LCLMGKMR---SDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTL 304
Query: 450 VDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGC 509
VDGMC+H RI++AVEFF+ + +KGL N VTYT+ I AFCNVNN +A+++ D+MS+ GC
Sbjct: 305 VDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGC 364
Query: 510 SADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYE 569
D+VVY+TLI GL QAGR++DAS VVSKLKEAGF D VCYN LIS FCKK LD+A E
Sbjct: 365 FPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQE 424
Query: 570 VLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMV-KEGLVPTVVTYGALIHAF 628
L EME G+ P+SVTYNTLIS+ SK GNF A + +KKM +EGL PTV TYGALIHA+
Sbjct: 425 WLNEMELAGVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAY 484
Query: 629 CVNGHVDEAMKIFKELSS-SSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRP 687
C+N ++DEA+KIFKE+++ +S V PNTVIYNILIDSLCK QV ALSL+++MK + V P
Sbjct: 485 CLNNNIDEAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMP 544
Query: 688 NTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFV 747
NT TYN++FK LR KN LDKAFKLMDRM+E AC+PDYI+MEILTEWLS G+ KLKKF
Sbjct: 545 NTTTYNSIFKALRDKNWLDKAFKLMDRMVEQACNPDYITMEILTEWLSAVGEITKLKKFT 604
Query: 748 QG 749
QG
Sbjct: 605 QG 606
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22327132|ref|NP_680234.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75174514|sp|Q9LKU8.1|PP401_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g28460 gi|9502149|gb|AAF88002.1| contains similarity to Pfam family PF01535 (Domain of unknown function), score=340.5, E=1.9e-98, N=2 [Arabidopsis thaliana] gi|15529206|gb|AAK97697.1| AT5g28460/F21B23_120 [Arabidopsis thaliana] gi|27363272|gb|AAO11555.1| At5g28460/F21B23_120 [Arabidopsis thaliana] gi|332006418|gb|AED93801.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/755 (47%), Positives = 505/755 (66%), Gaps = 13/755 (1%)
Query: 4 ILTKQPKFLLKRHHLPLLRHFCTEHNSPLPQVSESS--IIITQALDVLLQTPDNEWTSSP 61
I +Q ++L H LR F + + P P++ S ++ + + L TP ++W SS
Sbjct: 7 ISRRQNSYILLNHS-RFLRRFSYDVD-PRPEIKSESQEFVVVKFVKTLQNTPQHDWASSE 64
Query: 62 QIKNLLFSSTSLSPQLFFQITRRFPSSSRALSFFNFLQSNLPT-EANTSSLSYAYQAVFE 120
+ L+ SS+S SP +F QITRR S S A+SFF +L + + + SLS A Q+V E
Sbjct: 65 SLSALVVSSSSASPLVFSQITRRLGSYSLAISFFEYLDAKSQSLKRREESLSLALQSVIE 124
Query: 121 LAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRN 180
A E + L LY+ K++NIPL+I + LLIR+FG++ M + S+LVY LD+N++N
Sbjct: 125 FAGSEPDPRDKLLRLYEIAKEKNIPLTIVATKLLIRWFGRMGMVNQSVLVYERLDSNMKN 184
Query: 181 THVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTD 240
+ VRNV++DVLLR DAF VLDEML +ES FP N +T DIV + + + + +T+
Sbjct: 185 SQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWK----ERLLTE 240
Query: 241 EELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNAL 300
E+++ L+S+F+ HGV PN+VWLT+ I+ C+ + + AWD+L LMK PLEA NAL
Sbjct: 241 EKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNAL 300
Query: 301 LNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKE 360
L+ LGR D RMN L +M E I P VVT G +IN LCK R DEALEVFE+M GK
Sbjct: 301 LSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQM-RGKR 359
Query: 361 TAEISV-EPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFC 419
T + +V + D I FNTLIDGLCKVG+ +EA L+ +R++L++ C+PNAVTYNCLI+G+C
Sbjct: 360 TDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELL--VRMKLEERCVPNAVTYNCLIDGYC 417
Query: 420 KSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAV 479
++G +E E+ MK++ + PNVVT+NT+V GMCRH +N AV FF ++ ++G+ N V
Sbjct: 418 RAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVV 477
Query: 480 TYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKL 539
TY LI A C+V+N ++A+ W++ M AGCS D+ +Y+ LISGLCQ R +DA VV KL
Sbjct: 478 TYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKL 537
Query: 540 KEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNF 599
KE GF D++ YN LI FC K +K YE+L +ME G P+S+TYNTLISF K +F
Sbjct: 538 KEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDF 597
Query: 600 SAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNI 659
+ R++++M ++GL PTV TYGA+I A+C G +DEA+K+FK++ S V+PNTVIYNI
Sbjct: 598 ESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNI 657
Query: 660 LIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHA 719
LI++ K ALSL EEMK+K VRPN TYNA+FK L +K + KLMD M+E +
Sbjct: 658 LINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQS 717
Query: 720 CHPDYISMEILTEWLSEAGQTEKLKKFVQGYAVSA 754
C P+ I+MEIL E LS + + KL+KF+QGY+V++
Sbjct: 718 CEPNQITMEILMERLSGSDELVKLRKFMQGYSVAS 752
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233137|ref|NP_191711.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75183498|sp|Q9M316.1|PP292_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g61520, mitochondrial; Flags: Precursor gi|6850843|emb|CAB71082.1| putative protein [Arabidopsis thaliana] gi|332646696|gb|AEE80217.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/743 (48%), Positives = 499/743 (67%), Gaps = 12/743 (1%)
Query: 16 HHLPLLRHFCTEHNSPLPQVSESS--IIITQALDVLLQTPDNEWTSSPQIKNLLFSSTSL 73
+H LR F + + P P++ S ++ + + L +TP ++W SS + L+ SS+S
Sbjct: 18 NHSRFLRRFSYDVD-PRPEIKLESQEFVVVKFVKTLQKTPQHDWASSESLSALVVSSSSA 76
Query: 74 SPQLFFQITRRFPSSSRALSFFNFLQSNLPT-EANTSSLSYAYQAVFELAIRERMSPESL 132
SP +F QITRR S S A+SFF +L + + + SLS A Q+V E A E + L
Sbjct: 77 SPLVFSQITRRLGSYSLAISFFEYLDAKSQSLKRREESLSLALQSVIEFAGSEPDPRDKL 136
Query: 133 FDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLL 192
LY+ K++NIPL++ + LLIR+FG++ M + S+LVY LD+N++N+ VRNV++DVLL
Sbjct: 137 LRLYEIAKEKNIPLTVVATNLLIRWFGRMGMVNQSVLVYERLDSNMKNSQVRNVVVDVLL 196
Query: 193 RCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAE 252
R DAF VLDEML +ES FP N +T DIV + + + +T+E+++ L+S+F+
Sbjct: 197 RNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWK----GRLLTEEKIIALISRFSS 252
Query: 253 HGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKR 312
HGV PN+VWLT+ I+ C+ + + AWD+L LMK PLEA NALL+ LGR D R
Sbjct: 253 HGVSPNSVWLTRFISSLCKNARANAAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISR 312
Query: 313 MNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISV-EPDVI 371
MN L +M E I P VVT G +IN LCK R DEALEVFEKM GK T + +V + D I
Sbjct: 313 MNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEKM-RGKRTDDGNVIKADSI 371
Query: 372 IFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELF 431
FNTLIDGLCKVG+ +EA L+ +R++L++ C PNAVTYNCLI+G+C++G +E E+
Sbjct: 372 HFNTLIDGLCKVGRLKEAEELL--VRMKLEERCAPNAVTYNCLIDGYCRAGKLETAKEVV 429
Query: 432 HLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNV 491
MK++ + PNVVT+NT+V GMCRH +N AV FF ++ ++G+ N VTY LI A C+V
Sbjct: 430 SRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSV 489
Query: 492 NNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCY 551
+N ++A+ W++ M AGCS D+ +Y+ LISGLCQ R +DA VV KLKE GF D++ Y
Sbjct: 490 SNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAY 549
Query: 552 NHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVK 611
N LI FC K +K YE+L +ME G P+S+TYNTLISF K +F + R++++M +
Sbjct: 550 NMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMRE 609
Query: 612 EGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVE 671
+GL PTV TYGA+I A+C G +DEA+K+FK++ S V+PNTVIYNILI++ K
Sbjct: 610 DGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFG 669
Query: 672 LALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILT 731
ALSL EEMK+K VRPN TYNA+FK L +K + KLMD M+E +C P+ I+MEIL
Sbjct: 670 QALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILM 729
Query: 732 EWLSEAGQTEKLKKFVQGYAVSA 754
E LS + + KL+KF+QGY+V++
Sbjct: 730 ERLSGSDELVKLRKFMQGYSVAS 752
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297821008|ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324225|gb|EFH54646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/750 (48%), Positives = 507/750 (67%), Gaps = 16/750 (2%)
Query: 14 KRHHLPLLRHF----C-TEHNSPLPQVSESS--IIITQALDVLLQTPDNEWTSSPQIKNL 66
+RH LL F C ++ P P++ S ++ + L L + P ++W SS + +L
Sbjct: 10 RRHSYILLNQFRLIRCFSDEVDPRPEIKSESQEFVVVKFLKNLQKIPQHDWASSESLSSL 69
Query: 67 LFSSTSLSPQLFFQITRRFPSSSRALSFFNFLQSNLPT-EANTSSLSYAYQAVFELAIRE 125
L SS+S SP +F QITRR S S A+SFF +L S + + SLS A Q+V E A E
Sbjct: 70 LVSSSSHSPLVFSQITRRLGSYSLAISFFEYLDSKSQSLKRREESLSLALQSVIEFAGSE 129
Query: 126 RMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRN 185
S + L LY+ K++NIPL++ + LLIR+FG++ M + S+LVY LD+N++N+ VRN
Sbjct: 130 PDSRDKLLRLYEIAKEKNIPLTVVATKLLIRWFGRMGMANQSVLVYERLDSNMKNSQVRN 189
Query: 186 VLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVG 245
V+IDVLLR DAF VLDEML +ES FP N +T DIV + + + +T+E+++G
Sbjct: 190 VVIDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWK----GRLLTEEKIIG 245
Query: 246 LVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALG 305
L+S+F+ HGV PN+VWLT+ I+ C+ +T+ AWD+L LMK APLEA NALL+ LG
Sbjct: 246 LISRFSSHGVSPNSVWLTRFISSLCKNARTNAAWDILSDLMKNKAPLEAPPFNALLSCLG 305
Query: 306 REGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEIS 365
R + RMN L +M E I P VVT G +IN LCK R DEAL+VFE+M GK T + +
Sbjct: 306 RNMNIGRMNALVLKMDEMKIRPDVVTLGILINTLCKSRRVDEALQVFEQM-CGKRTDDGN 364
Query: 366 V-EPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNI 424
V + D I FNTLIDGLCKVG+ +EA L+ +R+++++ C+PN VTYNCLI+G+C++G +
Sbjct: 365 VIKADSIHFNTLIDGLCKVGRLKEAEELL--VRMKMEERCVPNTVTYNCLIDGYCRAGKL 422
Query: 425 EKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTIL 484
E E+ MK++G+ P+VVT+NT+V GMCRH +N AV FF ++ ++G+ N VTY L
Sbjct: 423 ETAKEVVSRMKEDGIKPDVVTVNTIVGGMCRHHGLNMAVLFFMDMEKEGVKGNVVTYMTL 482
Query: 485 ITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGF 544
I A C+++N ++A+ WFD M AGCS D+ +Y+ LISGLCQ R +DA VV KL+E GF
Sbjct: 483 IHACCSLSNIEKAMHWFDKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLREGGF 542
Query: 545 RPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARR 604
D++ YN LI FC K +K YE+L +ME GM P+S+TYNTLISF K +F + R
Sbjct: 543 SLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDSITYNTLISFFGKHKDFESVER 602
Query: 605 VLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSL 664
++++M ++ L PTV TYGA+I A+C G + EA+K+FK++ S V+PNTVIYNILI++
Sbjct: 603 MMEQMREDELDPTVATYGAVIEAYCSVGELGEALKLFKDMGLRSKVNPNTVIYNILINAF 662
Query: 665 CKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY 724
K ALSL EEMK+K VRPN TYNA+FK L++KN + KLMD M+E +C P+
Sbjct: 663 SKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLKEKNQAETLLKLMDEMVEQSCEPNQ 722
Query: 725 ISMEILTEWLSEAGQTEKLKKFVQGYAVSA 754
I+MEIL E LS + + KL+KF+QGY+V++
Sbjct: 723 ITMEILMERLSGSDELVKLRKFMQGYSVAS 752
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21537126|gb|AAM61467.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/755 (47%), Positives = 502/755 (66%), Gaps = 13/755 (1%)
Query: 4 ILTKQPKFLLKRHHLPLLRHFCTEHNSPLPQVSESS--IIITQALDVLLQTPDNEWTSSP 61
I +Q ++L H LR F + + P P++ S ++ + + L TP ++W SS
Sbjct: 7 ISRRQNSYILLNHS-RFLRRFSYDVD-PRPEIKSESQEFVVVKFVKTLQNTPQHDWASSE 64
Query: 62 QIKNLLFSSTSLSPQLFFQITRRFPSSSRALSFFNFLQSNLPT-EANTSSLSYAYQAVFE 120
+ L+ SS+S SP +F QITRR S S A+SFF +L + + + SLS A Q+V E
Sbjct: 65 SLSALVVSSSSASPLVFSQITRRLGSYSLAISFFEYLDAKSQSLKRREESLSLALQSVIE 124
Query: 121 LAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRN 180
A E + L LY+ K++NIPL++ + LLIR+FG++ M + S+LVY LD+N++N
Sbjct: 125 FAGSEPDPRDKLLRLYEIAKEKNIPLTVVATKLLIRWFGRMGMVNQSVLVYERLDSNMKN 184
Query: 181 THVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTD 240
+ VRNV++DVLLR DAF VLDEML +ES FP N +T DIV + + + +T+
Sbjct: 185 SQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWK----GRLLTE 240
Query: 241 EELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNAL 300
E+++ L+S+F+ HGV PN+VWLT+ I+ C+ + + AWD+L LMK PLEA NAL
Sbjct: 241 EKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANAAWDILSDLMKNKTPLEAPPFNAL 300
Query: 301 LNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKE 360
L+ LGR D RMN L +M E I P VVT G +IN L K R DEALEVFE+M GK
Sbjct: 301 LSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLSKSRRVDEALEVFEQM-RGKR 359
Query: 361 TAEISV-EPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFC 419
T + +V + D I FNTLIDGLCKVG+ +EA L+ +R++L++ C+PNAVTYNCLI+G+C
Sbjct: 360 TDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELL--VRMKLEERCVPNAVTYNCLIDGYC 417
Query: 420 KSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAV 479
++ +E E+ MK++ + PNVVT+NT+V GMCRH +N AV FF ++ ++G+ N V
Sbjct: 418 RAVKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVV 477
Query: 480 TYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKL 539
TY LI A C+V+N ++A+ W++ M AGCS D+ +Y+ LISGLCQ R +DA VV KL
Sbjct: 478 TYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKL 537
Query: 540 KEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNF 599
KE GF D++ YN LI FC K +K YE+L +ME G P+S+TYNTLISF K +F
Sbjct: 538 KEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDF 597
Query: 600 SAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNI 659
+ R++++M ++GL PTV TYGA+I A+C G +DEA+K+FK++ S V+PNTVIYNI
Sbjct: 598 ESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNI 657
Query: 660 LIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHA 719
LI++ K ALSL EEMK+K VRPN TYNA+FK L +K + KLMD M+E +
Sbjct: 658 LINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEQS 717
Query: 720 CHPDYISMEILTEWLSEAGQTEKLKKFVQGYAVSA 754
C P+ I+MEIL E LS + + KL+KF+QGY+V++
Sbjct: 718 CEPNQITMEILMERLSGSDELVKLRKFMQGYSVAS 752
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241779|ref|NP_198189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|9502152|gb|AAF88005.1| similar to a large family of Arabidopsis thaliana salt inducible protein-like proteins; contains similarity to Pfam family PF01535 (Domain of unknown function), score=340.5, E=1.9e-98, N=2 [Arabidopsis thaliana] gi|332006410|gb|AED93793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/734 (47%), Positives = 484/734 (65%), Gaps = 19/734 (2%)
Query: 4 ILTKQPKFLLKRHHLPLLRHFCTEHNSPLPQVSESS--IIITQALDVLLQTPDNEWTSSP 61
I +Q ++L H LR F + + P P++ S ++ + + L TP ++W SS
Sbjct: 7 ISRRQNSYILLNHS-RFLRRFSYDVD-PRPEIKSESQEFVVVKFVKTLQNTPQHDWASSE 64
Query: 62 QIKNLLFSSTSLSPQLFFQITRRFPSSSRALSFFNFLQSNLPT-EANTSSLSYAYQAVFE 120
+ L+ SS+S SP +F QITRR S S A+SFF +L + + + SLS A Q+V E
Sbjct: 65 SLSALVVSSSSASPLVFSQITRRLGSYSLAISFFEYLDAKSQSLKRREESLSLALQSVIE 124
Query: 121 LAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRN 180
A E + L LY+ K++NIPL+I + LLIR+FG++ M + S+LVY LD+N++N
Sbjct: 125 FAGSEPDPRDKLLRLYEIAKEKNIPLTIVATKLLIRWFGRMGMVNQSVLVYERLDSNMKN 184
Query: 181 THVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTD 240
+ VRNV++DVLLR DAF VLDEML +ES FP N +T DIV + + + + +T+
Sbjct: 185 SQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWK----ERLLTE 240
Query: 241 EELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNAL 300
E+++ L+S+F+ HGV PN+VWLT+ I+ C+ + + AWD+L LMK PLEA NAL
Sbjct: 241 EKIIALISRFSSHGVSPNSVWLTRFISSLCKNARANTAWDILSDLMKNKTPLEAPPFNAL 300
Query: 301 LNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKE 360
L+ LGR D RMN L +M E I P VVT G +IN LCK R DEALEVFE+M GK
Sbjct: 301 LSCLGRNMDISRMNDLVLKMDEVKIRPDVVTLGILINTLCKSRRVDEALEVFEQM-RGKR 359
Query: 361 TAEISV-EPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFC 419
T + +V + D I FNTLIDGLCKVG+ +EA L+ +R++L++ C+PNAVTYNCLI+G+C
Sbjct: 360 TDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELL--VRMKLEERCVPNAVTYNCLIDGYC 417
Query: 420 KSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAV 479
++G +E E+ MK++ + PNVVT+NT+V GMCRH +N AV FF ++ ++G+ N V
Sbjct: 418 RAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVV 477
Query: 480 TYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKL 539
TY LI A C+V+N ++A+ W++ M AGCS D+ +Y+ LISGLCQ R +DA VV KL
Sbjct: 478 TYMTLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKL 537
Query: 540 KEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNF 599
KE GF D++ YN LI FC K +K YE+L +ME G P+S+TYNTLISF K +F
Sbjct: 538 KEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDF 597
Query: 600 SAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNI 659
+ R++++M ++GL PTV TYGA+I A+C G +DEA+K+FK++ S V+PNTVIYNI
Sbjct: 598 ESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNI 657
Query: 660 LIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHA 719
LI++ K ALSL EEMK+K VRPN TYNA+FK L +K + KLMD M+EH
Sbjct: 658 LINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNALFKCLNEKTQGETLLKLMDEMVEHL 717
Query: 720 CHPDYISMEILTEW 733
+ +I ++W
Sbjct: 718 VN------QIRSQW 725
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/528 (43%), Positives = 345/528 (65%), Gaps = 15/528 (2%)
Query: 225 FYALMRREHVKNSVTDEELVGLVSKFAEHGVFP-NAVWLTQLITRFCRKGKTDEAWDVLH 283
YAL+ ++ T L L S A H + P +A+ L++L+ RF EA L
Sbjct: 65 LYALIAEP--SHAFTPASLASLHSLAARHRIPPPSALLLSKLVRRFSSPA---EAAGFLR 119
Query: 284 VLMKFDAPLEAASC-NALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKL 342
+ AP S N+LL ALGR G+ + M +LFT M++ ++P VVT+G ++N LCK
Sbjct: 120 DSLASGAPAPDISIFNSLLTALGRAGNLRGMTELFTSMRDASVKPDVVTYGILLNGLCKS 179
Query: 343 YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQK 402
+AL+V ++M + V PD+ I NT++DGLCK+G+ ++A+ +++ R+R
Sbjct: 180 GHVGDALKVLDRM----SSPGSDVCPDIAILNTVVDGLCKIGRLQQAIIFVDE-RMRHVH 234
Query: 403 GCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSA 462
GC PNAVTYNCL + FC+ G+I ++ M++EGV PNV+T+NT++ G+CR GR+ +A
Sbjct: 235 GCAPNAVTYNCLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVGRVGAA 294
Query: 463 VEFFQE--VTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLI 520
+EFF+E NAVTY+ L +AF + NN A++ F +M+ G D+V+YFT+I
Sbjct: 295 LEFFREKRTVWPEARGNAVTYSTLASAFLHCNNVDMAMELFHEMADHGHRPDAVMYFTMI 354
Query: 521 SGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMT 580
SGL QAGR+ DA + +K+AGF+ D YN LI GFC+KK L +AYE+L+EM+ +G+
Sbjct: 355 SGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMKGVGLQ 414
Query: 581 PNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKI 640
P+ TYNTL+S L K+G+FSA +L M+ +G P+VVT+G L+H +C G DEA++I
Sbjct: 415 PDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRI 474
Query: 641 FKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLR 700
F+ + + + PNTVIYN LID LCK+ +V++A+ L +EM+ K V N TYNA+ KGL+
Sbjct: 475 FRSM-DEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMREKNVPANVTTYNALLKGLQ 533
Query: 701 QKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQ 748
K M +KAF+LMDRM E C P+Y+++++L EWL E G+TE+LK F+Q
Sbjct: 534 DKKMAEKAFELMDRMREERCTPNYVTVDVLMEWLPEIGETERLKCFMQ 581
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 757 | ||||||
| TAIR|locus:2146554 | 766 | AT5G28460 [Arabidopsis thalian | 0.948 | 0.937 | 0.478 | 4.1e-175 | |
| TAIR|locus:2082832 | 766 | AT3G61520 "AT3G61520" [Arabido | 0.948 | 0.937 | 0.476 | 1.1e-174 | |
| TAIR|locus:2146549 | 727 | AT5G28370 [Arabidopsis thalian | 0.899 | 0.936 | 0.476 | 6.8e-166 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.631 | 0.772 | 0.303 | 2.9e-64 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.692 | 0.572 | 0.298 | 3e-64 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.532 | 0.632 | 0.336 | 7.6e-64 | |
| TAIR|locus:2139732 | 566 | AT4G11690 [Arabidopsis thalian | 0.577 | 0.772 | 0.331 | 4.2e-63 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.673 | 0.682 | 0.289 | 4.2e-63 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.618 | 0.782 | 0.301 | 8.8e-63 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.801 | 0.805 | 0.258 | 8.8e-63 |
| TAIR|locus:2146554 AT5G28460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1701 (603.8 bits), Expect = 4.1e-175, P = 4.1e-175
Identities = 349/730 (47%), Positives = 485/730 (66%)
Query: 31 PLPQV-SESS-IIITQALDVLLQTPDNEWTSSPQIKNLLFSSTSLSPQLFFQITRRFPSS 88
P P++ SES ++ + + L TP ++W SS + L+ SS+S SP +F QITRR S
Sbjct: 32 PRPEIKSESQEFVVVKFVKTLQNTPQHDWASSESLSALVVSSSSASPLVFSQITRRLGSY 91
Query: 89 SRALSFFNFLQSNLPT-EANTSSLSYAYQAVFELAIRERMSPESLFDLYKACKDQNIPLS 147
S A+SFF +L + + + SLS A Q+V E A E + L LY+ K++NIPL+
Sbjct: 92 SLAISFFEYLDAKSQSLKRREESLSLALQSVIEFAGSEPDPRDKLLRLYEIAKEKNIPLT 151
Query: 148 INSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLDEM 207
I + LLIR+FG++ M + S+LVY LD+N++N+ VRNV++DVLLR DAF VLDEM
Sbjct: 152 IVATKLLIRWFGRMGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEM 211
Query: 208 LDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLIT 267
L +ES FP N +T DIV + + + + +T+E+++ L+S+F+ HGV PN+VWLT+ I+
Sbjct: 212 LQKESVFPPNRITADIVLHEVWK----ERLLTEEKIIALISRFSSHGVSPNSVWLTRFIS 267
Query: 268 RFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEP 327
C+ + + AWD+L LMK PLEA NALL+ LGR D RMN L +M E I P
Sbjct: 268 SLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRP 327
Query: 328 SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISV-EPDVIIFNTLIDGLCKVGKQ 386
VVT G +IN LCK R DEALEVFE+M GK T + +V + D I FNTLIDGLCKVG+
Sbjct: 328 DVVTLGILINTLCKSRRVDEALEVFEQM-RGKRTDDGNVIKADSIHFNTLIDGLCKVGRL 386
Query: 387 EEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGXXXXXXXX 446
+EA L+ +R++L++ C+PNAVTYNCLI+G+C++G +E E+ MK++
Sbjct: 387 KEAEELL--VRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTV 444
Query: 447 XXXXDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSR 506
GMCRH +N AV FF ++ ++G+ N VTY LI A C+V+N ++A+ W++ M
Sbjct: 445 NTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLE 504
Query: 507 AGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDK 566
AGCS D+ +Y+ LISGLCQ R +DA VV KLKE GF D++ YN LI FC K +K
Sbjct: 505 AGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEK 564
Query: 567 AYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIH 626
YE+L +ME G P+S+TYNTLISF K +F + R++++M ++GL PTV TYGA+I
Sbjct: 565 VYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVID 624
Query: 627 AFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVR 686
A+C G +DEA+K+FK++ S V+PNTVIYNILI++ K ALSL EEMK+K VR
Sbjct: 625 AYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVR 684
Query: 687 PNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKF 746
PN TYNA+FK L +K + KLMD M+E +C P+ I+MEIL E LS + + KL+KF
Sbjct: 685 PNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKLRKF 744
Query: 747 VQGYAVSAAP 756
+QGY+V A+P
Sbjct: 745 MQGYSV-ASP 753
|
|
| TAIR|locus:2082832 AT3G61520 "AT3G61520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1697 (602.4 bits), Expect = 1.1e-174, P = 1.1e-174
Identities = 348/730 (47%), Positives = 483/730 (66%)
Query: 31 PLPQVS-ESS-IIITQALDVLLQTPDNEWTSSPQIKNLLFSSTSLSPQLFFQITRRFPSS 88
P P++ ES ++ + + L +TP ++W SS + L+ SS+S SP +F QITRR S
Sbjct: 32 PRPEIKLESQEFVVVKFVKTLQKTPQHDWASSESLSALVVSSSSASPLVFSQITRRLGSY 91
Query: 89 SRALSFFNFLQSNLPT-EANTSSLSYAYQAVFELAIRERMSPESLFDLYKACKDQNIPLS 147
S A+SFF +L + + + SLS A Q+V E A E + L LY+ K++NIPL+
Sbjct: 92 SLAISFFEYLDAKSQSLKRREESLSLALQSVIEFAGSEPDPRDKLLRLYEIAKEKNIPLT 151
Query: 148 INSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLDEM 207
+ + LLIR+FG++ M + S+LVY LD+N++N+ VRNV++DVLLR DAF VLDEM
Sbjct: 152 VVATNLLIRWFGRMGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEM 211
Query: 208 LDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLIT 267
L +ES FP N +T DIV + + + +T+E+++ L+S+F+ HGV PN+VWLT+ I+
Sbjct: 212 LQKESVFPPNRITADIVLHEVWKGR----LLTEEKIIALISRFSSHGVSPNSVWLTRFIS 267
Query: 268 RFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEP 327
C+ + + AWD+L LMK PLEA NALL+ LGR D RMN L +M E I P
Sbjct: 268 SLCKNARANAAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRP 327
Query: 328 SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISV-EPDVIIFNTLIDGLCKVGKQ 386
VVT G +IN LCK R DEALEVFEKM GK T + +V + D I FNTLIDGLCKVG+
Sbjct: 328 DVVTLGILINTLCKSRRVDEALEVFEKM-RGKRTDDGNVIKADSIHFNTLIDGLCKVGRL 386
Query: 387 EEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGXXXXXXXX 446
+EA L+ +R++L++ C PNAVTYNCLI+G+C++G +E E+ MK++
Sbjct: 387 KEAEELL--VRMKLEERCAPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTV 444
Query: 447 XXXXDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSR 506
GMCRH +N AV FF ++ ++G+ N VTY LI A C+V+N ++A+ W++ M
Sbjct: 445 NTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLE 504
Query: 507 AGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDK 566
AGCS D+ +Y+ LISGLCQ R +DA VV KLKE GF D++ YN LI FC K +K
Sbjct: 505 AGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEK 564
Query: 567 AYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIH 626
YE+L +ME G P+S+TYNTLISF K +F + R++++M ++GL PTV TYGA+I
Sbjct: 565 VYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVID 624
Query: 627 AFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVR 686
A+C G +DEA+K+FK++ S V+PNTVIYNILI++ K ALSL EEMK+K VR
Sbjct: 625 AYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVR 684
Query: 687 PNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKF 746
PN TYNA+FK L +K + KLMD M+E +C P+ I+MEIL E LS + + KL+KF
Sbjct: 685 PNVETYNALFKCLNEKTQGETLLKLMDEMVEQSCEPNQITMEILMERLSGSDELVKLRKF 744
Query: 747 VQGYAVSAAP 756
+QGY+V A+P
Sbjct: 745 MQGYSV-ASP 753
|
|
| TAIR|locus:2146549 AT5G28370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1614 (573.2 bits), Expect = 6.8e-166, P = 6.8e-166
Identities = 330/692 (47%), Positives = 457/692 (66%)
Query: 31 PLPQV-SESS-IIITQALDVLLQTPDNEWTSSPQIKNLLFSSTSLSPQLFFQITRRFPSS 88
P P++ SES ++ + + L TP ++W SS + L+ SS+S SP +F QITRR S
Sbjct: 32 PRPEIKSESQEFVVVKFVKTLQNTPQHDWASSESLSALVVSSSSASPLVFSQITRRLGSY 91
Query: 89 SRALSFFNFLQSNLPT-EANTSSLSYAYQAVFELAIRERMSPESLFDLYKACKDQNIPLS 147
S A+SFF +L + + + SLS A Q+V E A E + L LY+ K++NIPL+
Sbjct: 92 SLAISFFEYLDAKSQSLKRREESLSLALQSVIEFAGSEPDPRDKLLRLYEIAKEKNIPLT 151
Query: 148 INSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLDEM 207
I + LLIR+FG++ M + S+LVY LD+N++N+ VRNV++DVLLR DAF VLDEM
Sbjct: 152 IVATKLLIRWFGRMGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEM 211
Query: 208 LDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLIT 267
L +ES FP N +T DIV + + + + +T+E+++ L+S+F+ HGV PN+VWLT+ I+
Sbjct: 212 LQKESVFPPNRITADIVLHEVWK----ERLLTEEKIIALISRFSSHGVSPNSVWLTRFIS 267
Query: 268 RFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEP 327
C+ + + AWD+L LMK PLEA NALL+ LGR D RMN L +M E I P
Sbjct: 268 SLCKNARANTAWDILSDLMKNKTPLEAPPFNALLSCLGRNMDISRMNDLVLKMDEVKIRP 327
Query: 328 SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISV-EPDVIIFNTLIDGLCKVGKQ 386
VVT G +IN LCK R DEALEVFE+M GK T + +V + D I FNTLIDGLCKVG+
Sbjct: 328 DVVTLGILINTLCKSRRVDEALEVFEQM-RGKRTDDGNVIKADSIHFNTLIDGLCKVGRL 386
Query: 387 EEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGXXXXXXXX 446
+EA L+ +R++L++ C+PNAVTYNCLI+G+C++G +E E+ MK++
Sbjct: 387 KEAEELL--VRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTV 444
Query: 447 XXXXDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSR 506
GMCRH +N AV FF ++ ++G+ N VTY LI A C+V+N ++A+ W++ M
Sbjct: 445 NTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVEKAMYWYEKMLE 504
Query: 507 AGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDK 566
AGCS D+ +Y+ LISGLCQ R +DA VV KLKE GF D++ YN LI FC K +K
Sbjct: 505 AGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEK 564
Query: 567 AYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIH 626
YE+L +ME G P+S+TYNTLISF K +F + R++++M ++GL PTV TYGA+I
Sbjct: 565 VYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVID 624
Query: 627 AFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVR 686
A+C G +DEA+K+FK++ S V+PNTVIYNILI++ K ALSL EEMK+K VR
Sbjct: 625 AYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVR 684
Query: 687 PNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718
PN TYNA+FK L +K + KLMD M+EH
Sbjct: 685 PNVETYNALFKCLNEKTQGETLLKLMDEMVEH 716
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 148/488 (30%), Positives = 251/488 (51%)
Query: 243 LVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLN 302
++G +G+ + +T +I +CRK K A+ VL K + + + L+N
Sbjct: 89 VLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVN 148
Query: 303 ALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETA 362
EG L M E P +VT T+IN LC R EAL + ++M+
Sbjct: 149 GFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMV------ 202
Query: 363 EISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSG 422
E +PD + + +++ LCK G AL L +M R K + V Y+ +I+ CK G
Sbjct: 203 EYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKA---SVVQYSIVIDSLCKDG 259
Query: 423 NIEKGLELFHLMKQEGXXXXXXXXXXXXDGMCRHGRINSAVEFFQEVTRKGLCANAVTYT 482
+ + L LF+ M+ +G G+C G+ + + +E+ + + + VT++
Sbjct: 260 SFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFS 319
Query: 483 ILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEA 542
LI F EA + +++M G + D++ Y +LI G C+ +++A+ + +
Sbjct: 320 ALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSK 379
Query: 543 GFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAA 602
G PDIV Y+ LI+ +CK K +D + +E+ G+ PN++TYNTL+ +SG +AA
Sbjct: 380 GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAA 439
Query: 603 RRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILID 662
+ + ++MV G+ P+VVTYG L+ C NG +++A++IF+++ S ++ IYNI+I
Sbjct: 440 KELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKS-RMTLGIGIYNIIIH 498
Query: 663 SLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHP 722
+C ++V+ A SL + K V+P+ TYN M GL +K L +A L +M E C P
Sbjct: 499 GMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTP 558
Query: 723 DYISMEIL 730
D + IL
Sbjct: 559 DDFTYNIL 566
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 3.0e-64, Sum P(2) = 3.0e-64
Identities = 160/536 (29%), Positives = 256/536 (47%)
Query: 201 FNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAV 260
F ++DEM + +++ +I Y M + K EE VSK E G+ P+
Sbjct: 196 FGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNV-EEANQYVSKIVEAGLDPDFF 254
Query: 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEM 320
T LI +C++ D A+ V + + + L++ L LF +M
Sbjct: 255 TYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKM 314
Query: 321 KENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGL 380
K+++ P+V T+ +I LC R EAL + KE E ++P++ + LID L
Sbjct: 315 KDDECFPTVRTYTVLIKSLCGSERKSEALNLV------KEMEETGIKPNIHTYTVLIDSL 368
Query: 381 CKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGXX 440
C K E+A L+ QM L+KG MPN +TYN LING+CK G IE +++ LM+
Sbjct: 369 CSQCKFEKARELLGQM---LEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLS 425
Query: 441 XXXXXXXXXXDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKW 500
G C+ ++ A+ ++ + + + VTY LI C NF A +
Sbjct: 426 PNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRL 484
Query: 501 FDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCK 560
M+ G D Y ++I LC++ R+ +A + L++ G P++V Y LI G+CK
Sbjct: 485 LSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCK 544
Query: 561 KKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVT 620
+D+A+ +L++M PNS+T+N LI L G A + +KMVK GL PTV T
Sbjct: 545 AGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVST 604
Query: 621 YGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEM 680
LIH +G D A F+++ SS P+ Y I + C+ ++ A +M +M
Sbjct: 605 DTILIHRLLKDGDFDHAYSRFQQMLSSGT-KPDAHTYTTFIQTYCREGRLLDAEDMMAKM 663
Query: 681 KVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSE 736
+ V P+ TY+++ KG + AF ++ RM + C P + L + L E
Sbjct: 664 RENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLE 719
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 139/413 (33%), Positives = 218/413 (52%)
Query: 326 EPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK 385
EP+ +TF T+IN LC R EALE+ ++M+ E+ +PD+I NTL++GLC GK
Sbjct: 155 EPNTITFSTLINGLCLEGRVSEALELVDRMV------EMGHKPDLITINTLVNGLCLSGK 208
Query: 386 QEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGXXXXXXX 445
+ EA+ LI++M ++ GC PNAVTY ++N CKSG +EL M++
Sbjct: 209 EAEAMLLIDKM---VEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 446 XXXXXDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMS 505
DG+C+HG +++A F E+ KG+ N +TY ILI FCN + + K DM
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325
Query: 506 RAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLD 565
+ + + V + LI + G++ +A + ++ G PD + Y LI GFCK+ LD
Sbjct: 326 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 385
Query: 566 KAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALI 625
KA +++ M G PN T+N LI+ K+ + +KM G+V VTY LI
Sbjct: 386 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 445
Query: 626 HAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEV 685
FC G ++ A ++F+E+ S V PN V Y IL+D LC N + E AL + E+++ ++
Sbjct: 446 QGFCELGKLNVAKELFQEMVSRK-VPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKM 504
Query: 686 RPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAG 738
+ YN + G+ + +D A+ L + P + I+ L + G
Sbjct: 505 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKG 557
|
|
| TAIR|locus:2139732 AT4G11690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 149/449 (33%), Positives = 233/449 (51%)
Query: 295 ASC-NALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFE 353
++C N LL + F + F E K + V +FG +I C+ A E + F+
Sbjct: 129 SNCFNYLLTFVVGSSSFNQWWSFFNENKSK-VVLDVYSFGILIKGCCE---AGEIEKSFD 184
Query: 354 KMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNC 413
+I E E P+V+I+ TLIDG CK G+ E+A L +M + G + N TY
Sbjct: 185 LLI---ELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMG---KLGLVANERTYTV 238
Query: 414 LINGFCKSGNIEKGLELFHLMKQEGXXXXXXXXXXXXDGMCRHGRINSAVEFFQEVTRKG 473
LING K+G ++G E++ M+++G + +C+ GR A + F E+ +G
Sbjct: 239 LINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERG 298
Query: 474 LCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDAS 533
+ N VTY LI C EA K D M G + + + Y TLI G C G++ A
Sbjct: 299 VSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKAL 358
Query: 534 LVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFL 593
+ LK G P +V YN L+SGFC+K A ++++EME+ G+ P+ VTY LI
Sbjct: 359 SLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTF 418
Query: 594 SKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN 653
++S N A ++ M + GLVP V TY LIH FC+ G ++EA ++FK + N PN
Sbjct: 419 ARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEK-NCEPN 477
Query: 654 TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMD 713
VIYN +I CK AL L++EM+ KE+ PN +Y M + L ++ +A +L++
Sbjct: 478 EVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVE 537
Query: 714 RMIEHACHPDYISMEILTEWLSEAGQTEK 742
+MI+ P + +++ +++ + K
Sbjct: 538 KMIDSGIDPSTSILSLISRAKNDSHVSSK 566
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 152/525 (28%), Positives = 261/525 (49%)
Query: 232 EHVKNSVTDEELVGLVSKFAEHGV---FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKF 288
E V D+E LV K + + + ++ + R D+A ++H+
Sbjct: 104 EDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAH 163
Query: 289 DAPLEAASCNALLNALGR-EGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADE 347
S NA+L+A R + + +F EM E+ + P+V T+ +I C D
Sbjct: 164 GFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDV 223
Query: 348 ALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN 407
AL +F+KM ET P+V+ +NTLIDG CK+ K ++ L+ M L KG PN
Sbjct: 224 ALTLFDKM----ETK--GCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMAL---KGLEPN 274
Query: 408 AVTYNCLINGFCKSGNIEKGLELFHLMKQEGXXXXXXXXXXXXDGMCRHGRINSAVEFFQ 467
++YN +ING C+ G +++ + M + G G C+ G + A+
Sbjct: 275 LISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHA 334
Query: 468 EVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAG 527
E+ R GL + +TYT LI + C N A+++ D M G + Y TL+ G Q G
Sbjct: 335 EMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKG 394
Query: 528 RMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYN 587
MN+A V+ ++ + GF P +V YN LI+G C ++ A VL++M++ G++P+ V+Y+
Sbjct: 395 YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYS 454
Query: 588 TLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSS 647
T++S +S + A RV ++MV++G+ P +TY +LI FC EA +++E+
Sbjct: 455 TVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV 514
Query: 648 SNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDK 707
+ P+ Y LI++ C +E AL L EM K V P+ TY+ + GL +++ +
Sbjct: 515 G-LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTRE 573
Query: 708 AFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGYAV 752
A +L+ ++ P ++ L E S + + + ++G+ +
Sbjct: 574 AKRLLLKLFYEESVPSDVTYHTLIENCSNI-EFKSVVSLIKGFCM 617
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 147/488 (30%), Positives = 246/488 (50%)
Query: 233 HVKNSVTDEELV-GLVSKFAE----HGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMK 287
H++ V EL G KF E HG P+ + T LI FCR GKT +A +L +L
Sbjct: 108 HLRQMVRTGELEEGF--KFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEG 165
Query: 288 FDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADE 347
A + + N +++ + G+ +N + + + P VVT+ TI+ LC + +
Sbjct: 166 SGAVPDVITYNVMISGYCKAGE---INNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQ 222
Query: 348 ALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN 407
A+EV ++M+ + PDVI + LI+ C+ A+ L+++MR +GC P+
Sbjct: 223 AMEVLDRML------QRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMR---DRGCTPD 273
Query: 408 AVTYNCLINGFCKSGNIEKGLELFHLMKQEGXXXXXXXXXXXXDGMCRHGRINSAVEFFQ 467
VTYN L+NG CK G +++ ++ + M G MC GR A +
Sbjct: 274 VVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLA 333
Query: 468 EVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAG 527
++ RKG + VT+ ILI C AI + M + GC +S+ Y L+ G C+
Sbjct: 334 DMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEK 393
Query: 528 RMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYN 587
+M+ A + ++ G PDIV YN +++ CK ++ A E+L ++ G +P +TYN
Sbjct: 394 KMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYN 453
Query: 588 TLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSS 647
T+I L+K+G A ++L +M + L P +TY +L+ G VDEA+K F E
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513
Query: 648 SNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDK 707
+ PN V +N ++ LCK+ Q + A+ + M + +PN +Y + +GL + M +
Sbjct: 514 G-IRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKE 572
Query: 708 AFKLMDRM 715
A +L++ +
Sbjct: 573 ALELLNEL 580
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 167/646 (25%), Positives = 312/646 (48%)
Query: 117 AVFELAIRERMSPESLFD----LYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYN 172
A++E I R+ FD + + K + ++ +LI + + + D L V +
Sbjct: 84 ALYE-EILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVD 142
Query: 173 -ELDN-NLR-NTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNE--LTGDIVFYA 227
+D L+ +TH N ++++L+ D ++ +++ + S + + T +++ A
Sbjct: 143 WMIDEFGLKPDTHFYNRMLNLLV----DGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKA 198
Query: 228 LMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMK 287
L R ++ ++ ++ +G+ P+ T ++ + +G D A + +++
Sbjct: 199 LCRAHQLRPAIL------MLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVE 252
Query: 288 FDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEND-IEPSVVTFGTIINRLCKLYRAD 346
F S N +++ +EG + EM D P TF T++N LCK
Sbjct: 253 FGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVK 312
Query: 347 EALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP 406
A+E+ + M+ +E +PDV +N++I GLCK+G+ +EA+ +++QM + + C P
Sbjct: 313 HAIEIMDVML--QE----GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM---ITRDCSP 363
Query: 407 NAVTYNCLINGFCKSGNIEKGLELFHLMKQEGXXXXXXXXXXXXDGMC--RHGRINSAVE 464
N VTYN LI+ CK +E+ EL ++ +G G+C R+ R+ A+E
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRV--AME 421
Query: 465 FFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLC 524
F+E+ KG + TY +LI + C+ EA+ M +GC+ + Y TLI G C
Sbjct: 422 LFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC 481
Query: 525 QAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSV 584
+A + +A + +++ G + V YN LI G CK + ++ A +++ +M G P+
Sbjct: 482 KANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKY 541
Query: 585 TYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKEL 644
TYN+L++ + G+ A +++ M G P +VTYG LI C G V+ A K+ + +
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601
Query: 645 SSSS-NVSPNTVIYNILIDSLCKNNQVELALSLMEEM-KVKEVRPNTNTYNAMFKGL-RQ 701
N++P+ YN +I L + + A++L EM + E P+ +Y +F+GL
Sbjct: 602 QMKGINLTPHA--YNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNG 659
Query: 702 KNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFV 747
+ +A + ++E P++ S+ +L E L E L K V
Sbjct: 660 GGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLV 705
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LKU8 | PP401_ARATH | No assigned EC number | 0.4768 | 0.9801 | 0.9686 | yes | no |
| Q9M316 | PP292_ARATH | No assigned EC number | 0.4804 | 0.9656 | 0.9543 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 757 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-35 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-34 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-32 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-23 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-22 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-22 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-13 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-09 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-09 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 3e-35
Identities = 103/435 (23%), Positives = 186/435 (42%), Gaps = 21/435 (4%)
Query: 302 NALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKET 361
N L R+G K L +M++ + + + CK RA + F K+I
Sbjct: 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR---- 433
Query: 362 AEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS 421
P + FN L+ + AL + +RL + G + Y LI+ KS
Sbjct: 434 -----NPTLSTFNMLMSVCASSQDIDGALRV---LRLVQEAGLKADCKLYTTLISTCAKS 485
Query: 422 GNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTY 481
G ++ E+FH M GV NV T L+DG R G++ A + + K + + V +
Sbjct: 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF 545
Query: 482 TILITAFCNVNNFQEAIKWFDDMSRAGCSA-----DSVVYFTLISGLCQAGRMNDASLVV 536
LI+A A FD ++ D + L+ AG+++ A V
Sbjct: 546 NALISACGQSGAVDRA---FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 537 SKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKS 596
+ E + Y ++ +K D A + +M+ G+ P+ V ++ L+ +
Sbjct: 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662
Query: 597 GNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVI 656
G+ A +L+ K+G+ V+Y +L+ A + +A+++++++ S + P
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-LRPTVST 721
Query: 657 YNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMI 716
N LI +LC+ NQ+ AL ++ EMK + PNT TY+ + +K+ D L+ +
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781
Query: 717 EHACHPDYISMEILT 731
E P+ + +T
Sbjct: 782 EDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 4e-34
Identities = 95/384 (24%), Positives = 171/384 (44%), Gaps = 16/384 (4%)
Query: 298 NALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMI- 356
N L++ D ++ ++E ++ + T+I+ K + D EVF +M+
Sbjct: 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500
Query: 357 AGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN 416
AG VE +V F LIDG + G+ +A G MR K P+ V +N LI+
Sbjct: 501 AG-------VEANVHTFGALIDGCARAGQVAKAFGAYGIMR---SKNVKPDRVVFNALIS 550
Query: 417 GFCKSGNIEKGLELFHLMKQEG--VTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGL 474
+SG +++ ++ MK E + P+ +T+ L+ G+++ A E +Q + +
Sbjct: 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610
Query: 475 CANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASL 534
YTI + + ++ A+ +DDM + G D V + L+ AG ++ A
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 535 VVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLS 594
++ ++ G + V Y+ L+ K KA E+ ++++ I + P T N LI+ L
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730
Query: 595 KSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654
+ A VL +M + GL P +TY L+ A D + + + + PN
Sbjct: 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG-IKPNL 789
Query: 655 VIYNILIDSLCKNNQVELALSLME 678
V+ + LC + E A +L E
Sbjct: 790 VMCRCIT-GLCL-RRFEKACALGE 811
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 7e-32
Identities = 79/376 (21%), Positives = 159/376 (42%), Gaps = 46/376 (12%)
Query: 252 EHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFK 311
E G+ + T LI+ + GK D ++V H
Sbjct: 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFH---------------------------- 496
Query: 312 RMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVI 371
EM +E +V TFG +I+ + + +A + M + V+PD +
Sbjct: 497 -------EMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN------VKPDRV 543
Query: 372 IFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELF 431
+FN LI + G + A ++ +M+ P+ +T L+ +G +++ E++
Sbjct: 544 VFNALISACGQSGAVDRAFDVLAEMKAETHP-IDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 432 HLMKQEGV--TPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFC 489
++ + + TP V T+ V+ + G + A+ + ++ +KG+ + V ++ L+
Sbjct: 603 QMIHEYNIKGTPEVYTI--AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660
Query: 490 NVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIV 549
+ + +A + D + G +V Y +L+ A A + +K RP +
Sbjct: 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720
Query: 550 CYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKM 609
N LI+ C+ L KA EVL EM+ +G+ PN++TY+ L+ + + +L +
Sbjct: 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA 780
Query: 610 VKEGLVPTVVTYGALI 625
++G+ P +V +
Sbjct: 781 KEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-23
Identities = 69/273 (25%), Positives = 129/273 (47%), Gaps = 14/273 (5%)
Query: 255 VFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDA-PLEA--ASCNALLNALGREGDFK 311
V P+ V LI+ + G D A+DVL MK + P++ + AL+ A G
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVL-AEMKAETHPIDPDHITVGALMKACANAGQVD 596
Query: 312 RMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVI 371
R +++ + E +I+ + + +N + D AL +++ M + V+PD +
Sbjct: 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM------KKKGVKPDEV 650
Query: 372 IFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELF 431
F+ L+D G ++A +++ R ++G V+Y+ L+ + N +K LEL+
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDAR---KQGIKLGTVSYSSLMGACSNAKNWKKALELY 707
Query: 432 HLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNV 491
+K + P V T+N L+ +C ++ A+E E+ R GLC N +TY+IL+ A
Sbjct: 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767
Query: 492 NNFQEAIKWFDDMSRAGCSADSVVYFTLISGLC 524
++ + ++ ++V I+GLC
Sbjct: 768 DDADVGLDLL-SQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-22
Identities = 68/265 (25%), Positives = 124/265 (46%), Gaps = 3/265 (1%)
Query: 480 TYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKL 539
T+ +L++ + + A++ + AG AD +Y TLIS ++G+++ V ++
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498
Query: 540 KEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNF 599
AG ++ + LI G + + KA+ M + P+ V +N LIS +SG
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
Query: 600 SAARRVLKKMVKEG--LVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIY 657
A VL +M E + P +T GAL+ A G VD A ++++ + N+ +Y
Sbjct: 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-NIKGTPEVY 617
Query: 658 NILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717
I ++S + + ALS+ ++MK K V+P+ ++A+ LDKAF+++ +
Sbjct: 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677
Query: 718 HACHPDYISMEILTEWLSEAGQTEK 742
+S L S A +K
Sbjct: 678 QGIKLGTVSYSSLMGACSNAKNWKK 702
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-22
Identities = 93/430 (21%), Positives = 175/430 (40%), Gaps = 62/430 (14%)
Query: 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEND 324
+++ F R G+ AW V + + D S N L+ + G F L+ M
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMPERDL----FSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182
Query: 325 IEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVG 384
+ P V TF ++ + EV ++ E DV + N LI K G
Sbjct: 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVV------RFGFELDVDVVNALITMYVKCG 236
Query: 385 KQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVV 444
A + ++M R + +++N +I+G+ ++G +GLELF M++ V P+++
Sbjct: 237 DVVSARLVFDRMPRR-------DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289
Query: 445 TLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDM 504
T+ +++ G E V + G + + CN
Sbjct: 290 TITSVISACELLGDERLGREMHGYVVKTGFAVD--------VSVCN-------------- 327
Query: 505 SRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKML 564
+LI G +A V S+++ D V + +ISG+ K +
Sbjct: 328 -------------SLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLP 370
Query: 565 DKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGAL 624
DKA E ME ++P+ +T +++S + G+ ++ + ++GL+ VV AL
Sbjct: 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430
Query: 625 IHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKE 684
I + +D+A+++F + + + + +I L NN+ AL +M +
Sbjct: 431 IEMYSKCKCIDKALEVFHNIPEK-----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT- 484
Query: 685 VRPNTNTYNA 694
++PN+ T A
Sbjct: 485 LKPNSVTLIA 494
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 1e-20
Identities = 90/441 (20%), Positives = 180/441 (40%), Gaps = 26/441 (5%)
Query: 266 ITRFCRKGKTDEAWDVLHVL-MKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEND 324
I + G+ EA ++ +L L A++ +AL+ A + + ++ ++ +
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 325 IEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVG 384
EP ++ K +A +F++M E ++ + T+I GL G
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEM----------PERNLASWGTIIGGLVDAG 203
Query: 385 KQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVV 444
EA L +M + G T+ ++ G+ G +L + + GV +
Sbjct: 204 NYREAFALFREM---WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260
Query: 445 TLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDM 504
L+D + G I A F + K V + ++ + +EA+ + +M
Sbjct: 261 VSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEM 316
Query: 505 SRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKML 564
+G S D + +I + + A + L GF DIV L+ + K +
Sbjct: 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376
Query: 565 DKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGAL 624
+ A V M N +++N LI+ G + A + ++M+ EG+ P VT+ A+
Sbjct: 377 EDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432
Query: 625 IHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKE 684
+ A +G ++ +IF+ +S + + P + Y +I+ L + ++ A +++ K
Sbjct: 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK- 491
Query: 685 VRPNTNTYNAMFKGLR-QKNM 704
P N + A+ R KN+
Sbjct: 492 --PTVNMWAALLTACRIHKNL 510
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 2e-20
Identities = 109/519 (21%), Positives = 212/519 (40%), Gaps = 75/519 (14%)
Query: 183 VRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEE 242
V N LI + ++C A V D M R D + + M + +N E
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMPRR-----------DCISWNAMISGYFENGECLEG 272
Query: 243 LVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLN 302
L L E V P+ + +T +I+ G ++ ++K ++ + CN+L+
Sbjct: 273 L-ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331
Query: 303 ALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETA 362
G + ++F+ M+ D V++ +I+ K D+ALE + M
Sbjct: 332 MYLSLGSWGEAEKVFSRMETKDA----VSWTAMISGYEKNGLPDKALETYALM------- 380
Query: 363 EI-SVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS 421
E +V PD I +++ +G + + L E L +KG + V N LI + K
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHE---LAERKGLISYVVVANALIEMYSKC 437
Query: 422 GNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTY 481
I+K LE+FH + ++ +V++ +++ G+ + R A+ FF+++ L N+VT
Sbjct: 438 KCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTL 492
Query: 482 TILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKE 541
++A + + + R G D + L+ + GRMN A + ++
Sbjct: 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK 552
Query: 542 AGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSA 601
D+V +N L++G+ G S
Sbjct: 553 -----DVVSWNILLTGY-----------------------------------VAHGKGSM 572
Query: 602 ARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILI 661
A + +MV+ G+ P VT+ +L+ A +G V + ++ F + +++PN Y ++
Sbjct: 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632
Query: 662 DSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLR 700
D L + ++ A + + +M + P+ + A+ R
Sbjct: 633 DLLGRAGKLTEAYNFINKMPIT---PDPAVWGALLNACR 668
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 3e-18
Identities = 152/750 (20%), Positives = 287/750 (38%), Gaps = 147/750 (19%)
Query: 58 TSSPQIKNLLFSSTSL-SPQLFFQITRRFPSSSRALSFFNFLQSNLPTEANTSSLSYAYQ 116
K LF S +P + SR LS A +SS S
Sbjct: 6 FYLNPGKPNLFQLASHKAPNVLPYWNFHGRKRSRGLS-----------VAASSSSSTHDS 54
Query: 117 AVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDN 176
A+ E L ++ ++ +P+ ++ L R + V + +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 177 NLRNTHVR--NVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHV 234
+ + VR N ++ + +R A+ V +M +R+ F N L G YA
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDL-FSWNVLVGG---YA------- 163
Query: 235 KNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFC------RKGKTDEAWDVLHVLMKF 288
K DE L L + GV P+ V+ + R C +G+ A HV+ +F
Sbjct: 164 KAGYFDEAL-CLYHRMLWAGVRPD-VYTFPCVLRTCGGIPDLARGREVHA----HVV-RF 216
Query: 289 DAPLEAASCNALLNALGREGD-------FKRMN------------------------QLF 317
L+ NAL+ + GD F RM +LF
Sbjct: 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELF 276
Query: 318 TEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEP----DVIIF 373
M+E ++P ++T ++I+ C+L DE L G+E V+ DV +
Sbjct: 277 FTMRELSVDPDLMTITSVISA-CELL-GDERL--------GREMHGYVVKTGFAVDVSVC 326
Query: 374 NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHL 433
N+LI +G EA + +M + +AV++ +I+G+ K+G +K LE + L
Sbjct: 327 NSLIQMYLSLGSWGEAEKVFSRMETK-------DAVSWTAMISGYEKNGLPDKALETYAL 379
Query: 434 MKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNN 493
M+Q+ V+P+ +T+ +++ G ++ V+ + RKGL + V LI +
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
Query: 494 FQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNH 553
+A++ F ++ D + + ++I+GL R C+
Sbjct: 440 IDKALEVFHNIPEK----DVISWTSIIAGLRLNNR---------------------CFEA 474
Query: 554 LISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVK-- 611
LI F ++ +L + PNSVT +S ++ G + + +++
Sbjct: 475 LI--FFRQMLLT-------------LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519
Query: 612 ---EGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNN 668
+G +P AL+ + G ++ A F ++ + V +NIL+ +
Sbjct: 520 IGFDGFLPN-----ALLDLYVRCGRMNYAWNQF------NSHEKDVVSWNILLTGYVAHG 568
Query: 669 QVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRM-IEHACHPDYISM 727
+ +A+ L M V P+ T+ ++ + M+ + + M +++ P+
Sbjct: 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628
Query: 728 EILTEWLSEAGQTEKLKKFVQGYAVSAAPA 757
+ + L AG+ + F+ ++ PA
Sbjct: 629 ACVVDLLGRAGKLTEAYNFINKMPITPDPA 658
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 77.8 bits (193), Expect = 4e-18
Identities = 26/50 (52%), Positives = 39/50 (78%)
Query: 406 PNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR 455
P+ VTYN LI+G+CK G +E+ L+LF+ MK+ G+ PNV T + L+DG+C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 76.3 bits (189), Expect = 1e-17
Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Query: 368 PDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK 420
PDV+ +NTLIDG CK GK EEAL L +M+ ++G PN TY+ LI+G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMK---KRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 9e-17
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 546 PDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK 595
PD+V YN LI G+CKK +++A ++ EM+ G+ PN TY+ LI L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 1e-16
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 652 PNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGL 699
P+ V YN LID CK +VE AL L EMK + ++PN TY+ + GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 8e-16
Identities = 21/49 (42%), Positives = 26/49 (53%)
Query: 581 PNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFC 629
P+ VTYNTLI K G A ++ +M K G+ P V TY LI C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 6e-15
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 441 PNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCN 490
P+VVT NTL+DG C+ G++ A++ F E+ ++G+ N TY+ILI C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 1e-14
Identities = 80/403 (19%), Positives = 163/403 (40%), Gaps = 27/403 (6%)
Query: 318 TEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLI 377
+ + I S V+ + I +L R EALE+FE + AG ++ L+
Sbjct: 76 ARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAG-----CPFTLPASTYDALV 130
Query: 378 D---GLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLM 434
+ L + + +E G P+ N ++ K G + LF M
Sbjct: 131 EACIALKSIRCVKAVYWHVES------SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 435 KQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNF 494
+ N+ + T++ G+ G A F+E+ G A T+ +++ A + +
Sbjct: 185 PER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHL 554
+ + + + G D+ V LI + G + DA V + E V +N +
Sbjct: 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSM 296
Query: 555 ISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGL 614
++G+ ++A + EM D G++ + T++ +I S+ A++ +++ G
Sbjct: 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356
Query: 615 VPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELAL 674
+V AL+ + G +++A +F + N + +N LI + + A+
Sbjct: 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-----NLISWNALIAGYGNHGRGTKAV 411
Query: 675 SLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717
+ E M + V PN T+ A+ R + ++ +++ M E
Sbjct: 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 2e-14
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 616 PTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCK 666
P VVTY LI +C G V+EA+K+F E+ + PN Y+ILID LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEM-KKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 3e-13
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 477 NAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQ 525
+ VTY LI +C +EA+K F++M + G + Y LI GLC+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 57.7 bits (141), Expect = 4e-11
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 402 KGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMK 435
KG P+ VTYN LI+G C++G +++ +EL M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 9e-11
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 296 SCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341
+ N L++ ++G + +LF EMK+ I+P+V T+ +I+ LCK
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 2e-10
Identities = 44/212 (20%), Positives = 89/212 (41%), Gaps = 46/212 (21%)
Query: 252 EHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFK 311
+ GV P+ V+ + L+ G D+A+++L
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ---------------------------- 673
Query: 312 RMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVI 371
+ ++ I+ V++ +++ +ALE++E + + I + P V
Sbjct: 674 -------DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS------IKLRPTVS 720
Query: 372 IFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELF 431
N LI LC+ + +AL ++ +M+ + G PN +TY+ L+ + + + GL+L
Sbjct: 721 TMNALITALCEGNQLPKALEVLSEMK---RLGLCPNTITYSILLVASERKDDADVGLDLL 777
Query: 432 HLMKQEGVTPNVVTLNTLVDGMCRHGRINSAV 463
K++G+ PN+V + G+C R A
Sbjct: 778 SQAKEDGIKPNLVMCRCIT-GLCLR-RFEKAC 807
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.4 bits (135), Expect = 2e-10
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 543 GFRPDIVCYNHLISGFCKKKMLDKAYEVLQEME 575
G +PD+V YN LI G C+ +D+A E+L EME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 3e-10
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 512 DSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCK 560
D V Y TLI G C+ G++ +A + +++K+ G +P++ Y+ LI G CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (129), Expect = 2e-09
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 438 GVTPNVVTLNTLVDGMCRHGRINSAVEFFQE 468
G+ P+VVT NTL+DG+CR GR++ AVE E
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 3e-09
Identities = 53/283 (18%), Positives = 114/283 (40%), Gaps = 36/283 (12%)
Query: 273 GKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTF 332
G ++EA + + + ++ + + ++ R + Q + +V
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363
Query: 333 GTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGL 392
+++ K R ++A VF++M ++I +N LI G G+ +A+ +
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRM----------PRKNLISWNALIAGYGNHGRGTKAVEM 413
Query: 393 IEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQ-EGVTPNVVTLNTLVD 451
E+M + +G PN VT+ +++ SG E+G E+F M + + P + +++
Sbjct: 414 FERM---IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470
Query: 452 GMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSA 511
+ R G ++ A + R + L+TA C ++ ++ +A
Sbjct: 471 LLGREGLLDEAYAM---IRRAPFKPTVNMWAALLTA-CRIHK---------NLELGRLAA 517
Query: 512 DSVV---------YFTLISGLCQAGRMNDASLVVSKLKEAGFR 545
+ + Y L++ +GR +A+ VV LK G
Sbjct: 518 EKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 3e-09
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 409 VTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNV 443
VTYN LI+G CK+G +E+ LELF MK+ G+ P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 5e-09
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 648 SNVSPNTVIYNILIDSLCKNNQVELALSLMEEMK 681
+ P+ V YN LID LC+ +V+ A+ L++EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 7e-09
Identities = 16/32 (50%), Positives = 27/32 (84%)
Query: 366 VEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397
++PDV+ +NTLIDGLC+ G+ +EA+ L+++M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.2 bits (124), Expect = 8e-09
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 613 GLVPTVVTYGALIHAFCVNGHVDEAMKIFKE 643
GL P VVTY LI C G VDEA+++ E
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 2e-08
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 409 VTYNCLINGFCKSGNIEKGLELFHLMKQEGV 439
VTYN LI+G+CK+G +E+ LELF MK++GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 6e-07
Identities = 58/292 (19%), Positives = 109/292 (37%), Gaps = 49/292 (16%)
Query: 487 AFCNVNNFQEAIKWFDDMSRAGCS--ADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGF 544
C +EA++ F+ + AGC + Y L+ + V ++ +GF
Sbjct: 98 VACG--RHREALELFE-ILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF 154
Query: 545 RPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARR 604
PD N ++ K ML A + EM + N ++ T+I L +GN+ A
Sbjct: 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFA 210
Query: 605 VLKKM-----------------------------------VKEGLVPTVVTYGALIHAFC 629
+ ++M +K G+V ALI +
Sbjct: 211 LFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270
Query: 630 VNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNT 689
G +++A +F + + TV +N ++ + E AL L EM+ V +
Sbjct: 271 KCGDIEDARCVFDGMPEKT-----TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 690 NTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTE 741
T++ M + + +L+ A + +I D ++ L + S+ G+ E
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 8e-07
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 687 PNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPD 723
P+ TYN + G +K +++A KL + M + P+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPN 37
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 8e-07
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 655 VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNT 689
V YN LID LCK +VE AL L +EMK + + P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 9e-07
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 8/139 (5%)
Query: 607 KKMVKEG-------LVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNI 659
++ VKE PT+ T+ L+ + +D A+++ + L + + + +Y
Sbjct: 419 QRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR-LVQEAGLKADCKLYTT 477
Query: 660 LIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHA 719
LI + K+ +V+ + EM V N +T+ A+ G + + KAF M
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 720 CHPDYISMEILTEWLSEAG 738
PD + L ++G
Sbjct: 538 VKPDRVVFNALISACGQSG 556
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 9e-07
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 472 KGLCANAVTYTILITAFCNVNNFQEAIKWFDDMS 505
KGL + VTY LI C EA++ D+M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 2e-06
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 323 NDIEPSVVTFGTIINRLCKLYRADEALEVFEKM 355
++P VVT+ T+I+ LC+ R DEA+E+ ++M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 578 GMTPNSVTYNTLISFLSKSGNFSAARRVLKKMV 610
G+ P+ VTYNTLI L ++G A +L +M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-06
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 584 VTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTV 618
VTYNTLI L K+G A + K+M + G+ P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 479 VTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADS 513
VTY LI C +EA++ F +M G D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-06
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 408 AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTP 441
TYN L+ K+G+ + L + MK G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 7e-06
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIGM 579
V YN LISG+CK L++A E+ +EM++ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNS 583
V YN LI G CK +++A E+ +EM++ G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 655 VIYNILIDSLCKNNQVELALSLMEEMKVKEV 685
V YN LI CK ++E AL L +EMK K V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-05
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 584 VTYNTLISFLSKSGNFSAARRVLKKMVKEGLVP 616
TYN L+ L+K+G+ A VL++M GL P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 296 SCNALLNALGREGDFKRMNQLFTEMKENDIEPSV 329
+ N L++ L + G + +LF EMKE IEP V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 479 VTYTILITAFCNVNNFQEAIKWFDDMSRAGC 509
VTY LI+ +C +EA++ F +M G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 8e-05
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 508 GCSADSVVYFTLISGLCQAGRMNDASLVVSK 538
G D V Y TLI GLC+AGR+++A ++ +
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 8e-05
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 584 VTYNTLISFLSKSGNFSAARRVLKKMVKEGL 614
VTYN+LIS K+G A + K+M ++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 9e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 691 TYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPD 723
TYN + GL + +++A +L M E PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 9e-05
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 619 VTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654
VTY LI C G V+EA+++FKE+ + P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM-KERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 9e-05
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 619 VTYGALIHAFCVNGHVDEAMKIFKEL 644
VTY +LI +C G ++EA+++FKE+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 444 VTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANA 478
VT NTL+DG+C+ GR+ A+E F+E+ +G+ +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 9e-04
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 444 VTLNTLVDGMCRHGRINSAVEFFQEVTRKGL 474
VT N+L+ G C+ G++ A+E F+E+ KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 371 IIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNA 408
+ +NTLIDGLCK G+ EEAL L ++M+ ++G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMK---ERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 691 TYNAMFKGLRQKNMLDKAFKLMDRMIEH 718
TYN++ G + L++A +L M E
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 548 IVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTP 581
+ YN L+ K D A VL+EM+ G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 654 TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRP 687
YN L+ +L K +LAL+++EEMK ++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 518 TLISGLCQAGRMNDASLVVSKLKEAGFRPDI 548
TLI GLC+AGR+ +A + ++KE G PD+
Sbjct: 5 TLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 371 IIFNTLIDGLCKVGKQEEALGLIEQMR 397
+ +N+LI G CK GK EEAL L ++M+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.004
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 478 AVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSA 511
TY L+ A + A+ ++M +G
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.004
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEP 327
+ NALL AL + GD + EMK + ++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 757 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.83 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.8 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.67 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.66 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.58 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.58 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.54 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.5 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.47 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.44 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.43 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.42 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.41 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.37 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.35 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.33 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.31 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.31 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.31 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.29 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.29 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.29 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.29 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.28 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.28 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.28 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.25 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.24 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.21 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.2 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.2 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.17 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.17 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.15 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.14 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.11 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.08 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.07 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.06 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.03 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.96 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.95 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.95 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.94 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.9 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.84 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.82 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.8 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.79 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.77 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.76 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.76 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.75 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.72 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.63 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.57 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.56 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.53 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.52 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.5 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.49 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.48 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.48 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.47 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.46 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.45 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.44 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.41 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.39 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.38 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.34 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.34 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.22 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.19 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.19 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.16 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.11 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.01 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.97 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.96 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.95 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.94 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.92 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.88 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.87 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.84 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.8 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.78 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.73 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.72 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.7 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.68 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.68 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.67 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.64 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.6 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.59 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.59 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.57 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.54 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.54 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.53 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.52 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.52 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.52 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.51 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.51 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.5 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.48 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.47 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.47 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.46 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.46 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.46 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.45 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.45 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.44 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.42 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.41 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.41 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.38 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.38 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.38 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.36 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.31 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.21 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.18 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.18 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.14 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.13 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.13 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.12 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.12 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.09 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.09 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.04 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.0 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.98 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.97 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.96 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.95 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.94 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.87 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.87 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.85 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.78 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.77 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.69 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.68 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.62 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.61 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.58 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.57 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.53 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.53 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.45 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.38 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.36 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.34 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.3 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.28 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.22 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.22 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.17 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.12 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.1 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.04 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.99 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.94 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.9 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.83 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.83 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.81 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.72 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.72 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.69 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.56 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.56 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.51 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.51 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.46 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.38 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.37 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.36 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.35 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.26 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.26 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.13 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.09 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.08 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.97 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.89 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.87 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.8 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.75 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.66 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.63 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.63 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.59 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.41 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.37 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.21 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.08 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.01 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.0 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.99 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.98 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 93.95 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.31 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.28 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.16 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.13 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.93 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.73 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.61 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.39 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.37 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.27 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.22 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.7 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.6 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.3 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.29 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.03 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.81 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.74 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.7 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.49 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.35 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.27 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.22 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 90.13 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.07 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.89 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.57 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.51 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.46 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.27 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.04 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 88.95 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.46 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.33 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.21 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.2 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.16 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 88.08 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.97 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.56 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.92 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.74 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.37 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.19 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.04 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.65 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 85.43 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.41 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 85.37 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.13 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 84.83 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.61 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.12 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.08 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.77 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 83.59 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 83.06 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.44 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.38 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.12 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.92 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.64 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.52 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.18 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.12 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.86 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-79 Score=711.84 Aligned_cols=629 Identities=19% Similarity=0.261 Sum_probs=584.8
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHhhhCCCCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 048807 75 PQLFFQITRRFPSSSRALSFFNFLQSNLPTEANTSSLSYAYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLL 154 (757)
Q Consensus 75 ~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 154 (757)
.+.++..+.+.+....|+.+|+.+...... ++ ..++..++..+. ..+..+.+.+++..+.+.+..++..+++.|
T Consensus 54 ~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~-~~----~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 54 SNSQLRALCSHGQLEQALKLLESMQELRVP-VD----EDAYVALFRLCE-WKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-CC----hhHHHHHHHHHh-hCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 445556677788999999999988774322 33 234556666544 356678999999999999988999999999
Q ss_pred HHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhh
Q 048807 155 IRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHV 234 (757)
Q Consensus 155 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~ 234 (757)
+.+|+++|+++.|+.+|++|.+ +|+++||.+|.+|++.|++++|+++|++|... ++.||.+|+..++.++.+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~--g~~Pd~~t~~~ll~~~~~~--- 200 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA--GVRPDVYTFPCVLRTCGGI--- 200 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCChhHHHHHHHHhCCc---
Confidence 9999999999999999999974 78999999999999999999999999999874 6899999999999998755
Q ss_pred ccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 048807 235 KNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMN 314 (757)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 314 (757)
.....+.+++..+.+.|+.||..++++||.+|+++|++++|.++|++|.+ +|.++||++|.+|++.|++++|.
T Consensus 201 ---~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 201 ---PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred ---cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHH
Confidence 22356788999999999999999999999999999999999999999975 68999999999999999999999
Q ss_pred HHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 048807 315 QLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIE 394 (757)
Q Consensus 315 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 394 (757)
++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..+.+.| +.||..+|+.||.+|++.|++++|.++|+
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 347 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG------FAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC------CccchHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 048807 395 QMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGL 474 (757)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 474 (757)
+|. .||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+
T Consensus 348 ~m~-------~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 420 (857)
T PLN03077 348 RME-------TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420 (857)
T ss_pred hCC-------CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence 994 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 048807 475 CANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHL 554 (757)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 554 (757)
.++..+|+.||.+|+++|++++|.++|++|.+ +|..+|+++|.+|++.|+.++|..+|++|.. ++.||..||+.+
T Consensus 421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~l 495 (857)
T PLN03077 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAA 495 (857)
T ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHH
Confidence 99999999999999999999999999999975 5889999999999999999999999999986 589999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 555 ISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHV 634 (757)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 634 (757)
+.+|++.|.++.+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|+++ .||..+|+++|.+|++.|+.
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999999999999999999999987 48999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048807 635 DEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMK-VKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMD 713 (757)
Q Consensus 635 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 713 (757)
++|.++|++|.+ .|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|++++++|++.|++++|.++++
T Consensus 571 ~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 571 SMAVELFNRMVE-SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHH-cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999998 7999999999999999999999999999999999 68999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 714 RMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 714 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
+| ++.||..+|.+|+.+|...|+.+.++...+++
T Consensus 650 ~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 650 KM---PITPDPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99 48999999999999999999988877766553
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-76 Score=680.97 Aligned_cols=602 Identities=16% Similarity=0.255 Sum_probs=572.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc--CCCcchHHHHHHHH
Q 048807 114 AYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNN--LRNTHVRNVLIDVL 191 (757)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 191 (757)
.++.++..++ ..|.+++|+.+|+.|...|++++..++..++++|.+.+.++.|..++..+... .+++.++|+|+.+|
T Consensus 53 ~~n~~i~~l~-~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~ 131 (857)
T PLN03077 53 DSNSQLRALC-SHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF 131 (857)
T ss_pred hHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 3444454343 46788999999999999999999999999999999999999999999988753 45678899999999
Q ss_pred HhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 192 LRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCR 271 (757)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~ 271 (757)
+++|++++|+++|++|.+ ||.++|+.++.++++. +..++|+.+|++|...|+.||.++|+.++.+|++
T Consensus 132 ~~~g~~~~A~~~f~~m~~------~d~~~~n~li~~~~~~------g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~ 199 (857)
T PLN03077 132 VRFGELVHAWYVFGKMPE------RDLFSWNVLVGGYAKA------GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199 (857)
T ss_pred HhCCChHHHHHHHhcCCC------CCeeEHHHHHHHHHhC------CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCC
Confidence 999999999999999964 6888999999999876 3348999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHH
Q 048807 272 KGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEV 351 (757)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 351 (757)
.++++.+.+++..+.+.|..||+.++|++|.+|++.|++++|.++|++|.+ ||.++|+.+|.+|++.|++++|+++
T Consensus 200 ~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred ccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 6899999999999999999999999
Q ss_pred HHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048807 352 FEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELF 431 (757)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 431 (757)
|++|.+.+ +.||..+|+.++.++++.|+.+.|.+++..|. ..|..||..+|+.|+.+|++.|++++|.++|
T Consensus 276 f~~M~~~g------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~---~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 276 FFTMRELS------VDPDLMTITSVISACELLGDERLGREMHGYVV---KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred HHHHHHcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHH---HhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999988 89999999999999999999999999999997 8899999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 048807 432 HLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSA 511 (757)
Q Consensus 432 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 511 (757)
++|.+ ||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.+
T Consensus 347 ~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 347 SRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred hhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 99964 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 512 DSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLIS 591 (757)
Q Consensus 512 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 591 (757)
+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|.++|++|.+ ++.||..||+.++.
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 999999999999999999999999999974 5889999999999999999999999999986 58999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 048807 592 FLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVE 671 (757)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 671 (757)
+|++.|+++.+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|+.+ .||..+|+++|.+|++.|+.+
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999887 389999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 672 LALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMI-EHACHPDYISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 672 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
+|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|++++++|.+.|++++|.+++++|
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999998 6799999999999999999999999999999999
Q ss_pred hhccCC
Q 048807 751 AVSAAP 756 (757)
Q Consensus 751 ~~~~~~ 756 (757)
|..|++
T Consensus 652 ~~~pd~ 657 (857)
T PLN03077 652 PITPDP 657 (857)
T ss_pred CCCCCH
Confidence 998875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-69 Score=613.62 Aligned_cols=527 Identities=19% Similarity=0.348 Sum_probs=443.7
Q ss_pred CCCcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCC
Q 048807 178 LRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFP 257 (757)
Q Consensus 178 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 257 (757)
.++...+..++..+++.|++++|+++|++|..++. +.|+..++..++..+.+. +..++|..++..|.. |
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gv-v~~~~v~~~~li~~~~~~------g~~~eAl~lf~~M~~----p 435 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGL-LDMDKIYHAKFFKACKKQ------RAVKEAFRFAKLIRN----P 435 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHC------CCHHHHHHHHHHcCC----C
Confidence 34556677888888888888888888888887642 356666666666666544 234677777777653 7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
|..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING 417 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (757)
+|++.|++++|.++|+.|.+.+ +.||..+|+.||.+|++.|++++|.++|++|... ..++.||..+|+.+|.+
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~G------v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKN------VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHH
Confidence 8888888888888888888877 7888888888888888888888888888888521 25678888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048807 418 FCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEA 497 (757)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 497 (757)
|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 498 IKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDI 577 (757)
Q Consensus 498 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (757)
.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCH
Q 048807 578 GMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCV----N-------------------GHV 634 (757)
Q Consensus 578 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~-------------------g~~ 634 (757)
|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.+ . +..
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~ 828 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT 828 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH
Confidence 88888888888888888888888888888888888888888888888865432 1 124
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048807 635 DEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDR 714 (757)
Q Consensus 635 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 714 (757)
++|..+|++|.+ .|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++++++++. .++|..++++
T Consensus 829 ~~Al~lf~eM~~-~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~e 905 (1060)
T PLN03218 829 SWALMVYRETIS-AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHH
Confidence 678889999988 7899999999999988888888888888888888777888888999999987432 3689999999
Q ss_pred HHHcCCCCCHH
Q 048807 715 MIEHACHPDYI 725 (757)
Q Consensus 715 ~~~~g~~p~~~ 725 (757)
|.+.|+.|+..
T Consensus 906 m~~~Gi~p~~~ 916 (1060)
T PLN03218 906 AASLGVVPSVS 916 (1060)
T ss_pred HHHcCCCCCcc
Confidence 99988888764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-68 Score=606.56 Aligned_cols=522 Identities=18% Similarity=0.298 Sum_probs=490.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc---CCCcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccH
Q 048807 145 PLSINSATLLIRFFGKVSMYDYSLLVYNELDNN---LRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTG 221 (757)
Q Consensus 145 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~ 221 (757)
.++...+..+++.|.+.|++++|+++|+.|... .++..+++.++..|.+.|.+++|+.+|+.|.. ||..+|
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~------pd~~Ty 440 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN------PTLSTF 440 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC------CCHHHH
Confidence 456777888889999999999999999999863 23556678899999999999999999999953 899999
Q ss_pred HHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 222 DIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALL 301 (757)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 301 (757)
+.++.++++. +..+.|..++++|.+.|+.||..+|+.||.+|+++|++++|.++|++|.+.|+.||..+|+.||
T Consensus 441 n~LL~a~~k~------g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 441 NMLMSVCASS------QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred HHHHHHHHhC------cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999876 3347899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCcccccCCHhHHHHHHHH
Q 048807 302 NALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIA--GKETAEISVEPDVIIFNTLIDG 379 (757)
Q Consensus 302 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~li~~ 379 (757)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .+ +.||..+|+++|.+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g------i~PD~vTynaLI~a 588 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP------IDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC------CCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986 34 78999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 048807 380 LCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRI 459 (757)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 459 (757)
|++.|++++|.++|++|. ..++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 589 y~k~G~ldeA~elf~~M~---e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIH---EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHCCCHHHHHHHHHHHH---HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 999999999999999997 78899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048807 460 NSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKL 539 (757)
Q Consensus 460 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 539 (757)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c-------------------
Q 048807 540 KEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK----S------------------- 596 (757)
Q Consensus 540 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~------------------- 596 (757)
.+.|+.||..+|+.++.+|++.|++++|.++|.+|.+.|+.||..+|+.++..|.+ +
T Consensus 746 ~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n 825 (1060)
T PLN03218 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIEN 825 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999876432 2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 597 GNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSL 676 (757)
Q Consensus 597 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 676 (757)
+..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|.. .+..|+..+|+++|+++++. .++|..+
T Consensus 826 ~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l 902 (1060)
T PLN03218 826 KWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSL 902 (1060)
T ss_pred chHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHH
Confidence 22468999999999999999999999999999899999999999998887 67889999999999998543 4789999
Q ss_pred HHHHHhCCCCCCHH
Q 048807 677 MEEMKVKEVRPNTN 690 (757)
Q Consensus 677 ~~~m~~~g~~p~~~ 690 (757)
|++|...|+.|+..
T Consensus 903 ~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 903 LEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHcCCCCCcc
Confidence 99999999999875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=565.11 Aligned_cols=511 Identities=19% Similarity=0.301 Sum_probs=456.8
Q ss_pred CcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCH
Q 048807 180 NTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNA 259 (757)
Q Consensus 180 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 259 (757)
+..+|+.+|..|.+.|++++|+++|+.|... .++.||..++..++.++.+. ...+.+.+++..|.+.|+.||.
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~-~~~~~~~~t~~~ll~a~~~~------~~~~~a~~l~~~m~~~g~~~~~ 158 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAG-CPFTLPASTYDALVEACIAL------KSIRCVKAVYWHVESSGFEPDQ 158 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHhCCCcch
Confidence 3456777777777777777777777777653 23567777777777777654 2235667777888888999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHH
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRL 339 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 339 (757)
.+|+.|+++|+++|++++|.++|++|.+ ||.++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 9999999999999999999999999975 699999999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 048807 340 CKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFC 419 (757)
Q Consensus 340 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (757)
++.|..+.+.+++..+.+.+ +.+|..+|++||++|+++|++++|.++|++|. .+|+.+||.+|.+|+
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~~~vt~n~li~~y~ 301 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTG------VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-------EKTTVAWNSMLAGYA 301 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhC------CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-------CCChhHHHHHHHHHH
Confidence 99999999999999999988 89999999999999999999999999999994 579999999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048807 420 KSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIK 499 (757)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (757)
+.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||++|+++|++++|.+
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CC
Q 048807 500 WFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMED-IG 578 (757)
Q Consensus 500 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~ 578 (757)
+|++|.+ +|..+|++||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|
T Consensus 382 vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 382 VFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 9999974 699999999999999999999999999999999999999999999999999999999999999986 68
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CHHHH
Q 048807 579 MTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSP-NTVIY 657 (757)
Q Consensus 579 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~ 657 (757)
+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+ ..| +..+|
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~---~~p~~~~~y 531 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG---MGPEKLNNY 531 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC---CCCCCCcch
Confidence 9999999999999999999999999999876 4689999999999999999999999999999876 345 46789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHH-------HHHHHc----CCHHHHHHHHHHHHHcCCCCCH
Q 048807 658 NILIDSLCKNNQVELALSLMEEMKVKEVRPNT-NTYNAMF-------KGLRQK----NMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 658 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~-------~~~~~~----g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
..|+++|++.|++++|.+++++|.+.|+.+.+ .+|..+. .+-..+ .-++...++.++|.+.|..||.
T Consensus 532 ~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 532 VVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999986433 2332111 000001 1244566788888888999985
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-62 Score=554.60 Aligned_cols=472 Identities=20% Similarity=0.330 Sum_probs=451.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFD-APLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGT 334 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 334 (757)
..+..+|+.+|..|.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4466789999999999999999999999998765 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 335 IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 335 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
++.+|++.|++++|.++|++| ..||.++||.+|.+|++.|++++|.++|++|. ..|..|+..+|+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m----------~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~---~~g~~p~~~t~~~l 230 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEM----------PERNLASWGTIIGGLVDAGNYREAFALFREMW---EDGSDAEPRTFVVM 230 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcC----------CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH---HhCCCCChhhHHHH
Confidence 999999999999999999999 36899999999999999999999999999997 78999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 415 INGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNF 494 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 494 (757)
+.++++.|..+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++|.+ +|..+||.+|.+|++.|+.
T Consensus 231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999999999999999964 4999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEM 574 (757)
Q Consensus 495 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (757)
++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++++|++.|++++|.++|++|
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 048807 575 EDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654 (757)
Q Consensus 575 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 654 (757)
. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+..++.|+.
T Consensus 387 ~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 387 P----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred C----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 7 468999999999999999999999999999999999999999999999999999999999999998768999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 048807 655 VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPD-YISMEILTEW 733 (757)
Q Consensus 655 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 733 (757)
.+|++++++|++.|++++|.+++++|. +.|+..+|++|+.+|..+|+++.|...++++.+ +.|+ ..+|..|++.
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~ 537 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNL 537 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHH
Confidence 999999999999999999999998764 689999999999999999999999999999974 5675 5799999999
Q ss_pred HHhcCCHHHHHHHHhhchhc
Q 048807 734 LSEAGQTEKLKKFVQGYAVS 753 (757)
Q Consensus 734 ~~~~g~~~~A~~~~~~~~~~ 753 (757)
|.+.|++++|.+++++|..+
T Consensus 538 y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999998643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=373.18 Aligned_cols=593 Identities=16% Similarity=0.110 Sum_probs=486.8
Q ss_pred HHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCC-CcchHHHHHHHHHhcCChhhH
Q 048807 122 AIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLR-NTHVRNVLIDVLLRCDHDRDA 200 (757)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 200 (757)
+....|.+++|...++.+.... |.+..+...+...+.+.|++++|...+..+....+ ++..++.++..|.+.|++++|
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3445667777777777766543 56677777888888888888888888887765433 456778888888888888888
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 048807 201 FNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWD 280 (757)
Q Consensus 201 ~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 280 (757)
.++|+++... .|+.......+..+. ...+..+++...+..+.+.+ +.+......++..|.+.|++++|.+
T Consensus 383 ~~~~~~~~~~----~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 452 (899)
T TIGR02917 383 AEYLAKATEL----DPENAAARTQLGISK-----LSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALA 452 (899)
T ss_pred HHHHHHHHhc----CCCCHHHHHHHHHHH-----HhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHH
Confidence 8888888764 344332222222221 12234567778888777664 3344566678888889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 048807 281 VLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKE 360 (757)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 360 (757)
+++.+.+..+ .+..+|+.++..|...|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.++++++..
T Consensus 453 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 529 (899)
T TIGR02917 453 AAKKLEKKQP-DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID- 529 (899)
T ss_pred HHHHHHHhCC-CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 9999887654 377889999999999999999999999998764 4456677788888999999999999999998864
Q ss_pred CCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 048807 361 TAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVT 440 (757)
Q Consensus 361 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (757)
+.+..++..++..+.+.|+.++|..+++++. ...+.+...+..++..|.+.|++++|.++++.+.+.. +
T Consensus 530 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 598 (899)
T TIGR02917 530 ------PKNLRAILALAGLYLRTGNEEEAVAWLEKAA----ELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-P 598 (899)
T ss_pred ------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-C
Confidence 5678889999999999999999999999884 3345677888899999999999999999999998763 4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048807 441 PNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLI 520 (757)
Q Consensus 441 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 520 (757)
.+..+|..++..+...|++++|...|+++.+... .+...+..++..|.+.|++++|..+|+++.+.. +.+..++..++
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4778899999999999999999999999988653 367788889999999999999999999998764 55688899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048807 521 SGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFS 600 (757)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 600 (757)
..+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.|+++.+.+ |+..++..++..+.+.|+++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 99999999999999999998875 4467788889999999999999999999999874 45577888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 601 AARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEM 680 (757)
Q Consensus 601 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 680 (757)
+|.+.++++.+.. +.+...+..+...|...|++++|...|+++.+ ..+++..+++.++..+.+.|+ ++|+.+++++
T Consensus 754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 9999999999864 45788899999999999999999999999988 235677889999999999999 8899999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 681 KVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 681 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
.... +-+..++..++.++.+.|++++|.++++++++.+. .+..++..++..+.+.|+.++|.+.++++
T Consensus 830 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 830 LKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8752 34567788899999999999999999999998643 37899999999999999999999999886
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=359.34 Aligned_cols=628 Identities=15% Similarity=0.094 Sum_probs=318.8
Q ss_pred cCCChhHHHHHHHHhhhCCCCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 048807 84 RFPSSSRALSFFNFLQSNLPTEANTSSLSYAYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSM 163 (757)
Q Consensus 84 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 163 (757)
..+++..|...|+.+....|. +.. .+.. +..+....+.+++|+.+++.+.... |.+..++..+...+...|+
T Consensus 137 ~~~~~~~A~~~~~~a~~~~~~--~~~----~~~~-la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 208 (899)
T TIGR02917 137 GLGQLELAQKSYEQALAIDPR--SLY----AKLG-LAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGN 208 (899)
T ss_pred HcCCHHHHHHHHHHHHhcCCC--Chh----hHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCC
Confidence 456777777777766655443 111 1111 2223344566666766666665543 5566666666666666777
Q ss_pred hhHHHHHHHHhhccCC-CcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCC----------------------------
Q 048807 164 YDYSLLVYNELDNNLR-NTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQF---------------------------- 214 (757)
Q Consensus 164 ~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~---------------------------- 214 (757)
+++|...|+++....| ++.++..++..+.+.|++++|...++.+.+.++..
T Consensus 209 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 288 (899)
T TIGR02917 209 IELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDAL 288 (899)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7777776666654322 34556666666666666666666666665542210
Q ss_pred --CCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 048807 215 --PVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPL 292 (757)
Q Consensus 215 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 292 (757)
.|+..........+. ...+..+++...+.++.+.. +.+...+..++..+.+.|++++|.+.++.+.+.++.
T Consensus 289 ~~~~~~~~~~~~~~~~~-----~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~- 361 (899)
T TIGR02917 289 KSAPEYLPALLLAGASE-----YQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD- 361 (899)
T ss_pred HhCCCchhHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-
Confidence 111110000000000 11123345555555555442 344555666666666666666666666666655433
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVII 372 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
+...++.+...+.+.|++++|.++|+++.+.+ +.+...+..+...+...|++++|++.++.+.+.. +.....
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~ 433 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-------PELGRA 433 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-------Ccchhh
Confidence 55666666666667777777777776666543 2234445555556666666666666666665543 222333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDG 452 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (757)
...++..+.+.|++++|.++++.+. ...+++..+|..+...+...|++++|.+.|+++.+.. +.+...+..++..
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 508 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLE----KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARI 508 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHH
Confidence 4444555555555555555555552 2234445555555555555666666666665555442 1234445555555
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHH
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDA 532 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 532 (757)
+...|++++|.+.++++.+.... +..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+.+.|++++|
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHH
Confidence 55555555555555555544322 44455555555555555555555555554432 33344444455555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 533 SLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE 612 (757)
Q Consensus 533 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (757)
..+++.+.+.. +.+...|..++.+|...|++++|...|+++.+.. +.+...+..++..|.+.|++++|..+++++.+.
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555554432 2244455555555555555555555555554443 334444445555555555555555555555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048807 613 GLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTY 692 (757)
Q Consensus 613 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 692 (757)
. +.+..++..++..+...|++++|.++++.+.+. .+++...+..++..+.+.|++++|.+.|+++... .|+..++
T Consensus 665 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 739 (899)
T TIGR02917 665 K-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNA 739 (899)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHH
Confidence 2 223444444444455555555555555544441 1233334444444444455555555555444442 2333344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 693 NAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
..++.++.+.|++++|.+.++++++. .+.+...+..++..+...|+.++|.+.+++
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 44444444444444444444444432 122334444444444444444444444444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-26 Score=276.37 Aligned_cols=620 Identities=13% Similarity=0.069 Sum_probs=445.8
Q ss_pred ChHHHHHH---HhcCCChhHHHHHHHHhhhCCCCCCCCCchHHHHH---------HHHHHHHhcCCChHHHHHHHHHHhh
Q 048807 74 SPQLFFQI---TRRFPSSSRALSFFNFLQSNLPTEANTSSLSYAYQ---------AVFELAIRERMSPESLFDLYKACKD 141 (757)
Q Consensus 74 ~~~~~~~~---~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (757)
+|..+... ....++.+.|...++.+....|..+........+. -....+....+.+++|+..|+.+..
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 45554333 33668999999999888887776322111000100 0111234557889999999999887
Q ss_pred CCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHhhccCC-CcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcc
Q 048807 142 QNIPLSINSATL-LIRFFGKVSMYDYSLLVYNELDNNLR-NTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNEL 219 (757)
Q Consensus 142 ~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~ 219 (757)
.+ |++...... ........|+.++|+..++++....| ++..+..+..++.+.|+.++|+..|+++..... ...
T Consensus 141 ~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~----~~~ 215 (1157)
T PRK11447 141 GA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPA----GRD 215 (1157)
T ss_pred CC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC----chH
Confidence 54 555432222 22233346999999999999987545 456788999999999999999999999976321 111
Q ss_pred cHHHHH-HHHHhh--------------hhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 048807 220 TGDIVF-YALMRR--------------EHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHV 284 (757)
Q Consensus 220 ~~~~~~-~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (757)
...... ..+... ....+......+...+.........|+.. ...+...+...|++++|+..|++
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 101010 100000 00011111123333343333322223322 23456778899999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-ccchH------------HHHHHHHHhcCChhHHHHH
Q 048807 285 LMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEP-SVVTF------------GTIINRLCKLYRADEALEV 351 (757)
Q Consensus 285 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~------------~~li~~~~~~g~~~~A~~~ 351 (757)
+++..+. +..++..+...|.+.|++++|...|++.++..... +...| ......+.+.|++++|+..
T Consensus 295 aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 295 AVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9998755 78999999999999999999999999999864211 11112 1224467789999999999
Q ss_pred HHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048807 352 FEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELF 431 (757)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 431 (757)
|+++++.. +.+...+..+...|...|++++|++.|+++. ...+.+...+..+...|. .++.++|+..+
T Consensus 374 ~~~Al~~~-------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL----~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l 441 (1157)
T PRK11447 374 YQQARQVD-------NTDSYAVLGLGDVAMARKDYAAAERYYQQAL----RMDPGNTNAVRGLANLYR-QQSPEKALAFI 441 (1157)
T ss_pred HHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHH-hcCHHHHHHHH
Confidence 99999875 5677888899999999999999999999984 333556777888888775 46789999988
Q ss_pred HHHHhCCCC--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 432 HLMKQEGVT--------PNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDD 503 (757)
Q Consensus 432 ~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (757)
+.+...... .....+..+...+...|++++|++.|+++++..+. +...+..+...|.+.|++++|...+++
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 765432100 01234566778889999999999999999987544 677888899999999999999999999
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 504 MSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIV---------CYNHLISGFCKKKMLDKAYEVLQEM 574 (757)
Q Consensus 504 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~---------~~~~li~~~~~~g~~~~A~~~~~~~ 574 (757)
+.+.. +.+...+..+...+.+.++.++|...++.+......++.. .+..+...+...|+.++|..+++.
T Consensus 521 al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~- 598 (1157)
T PRK11447 521 LAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ- 598 (1157)
T ss_pred HHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-
Confidence 98754 4456666666667788999999999998865443222221 233456778899999999999872
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 048807 575 EDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654 (757)
Q Consensus 575 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 654 (757)
.+.+...+..+...+.+.|++++|+..|++.++.. +.+...+..++..|...|++++|++.++.+.+. -+.+.
T Consensus 599 ----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~ 671 (1157)
T PRK11447 599 ----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSL 671 (1157)
T ss_pred ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCCh
Confidence 25667778889999999999999999999999864 346888999999999999999999999988762 22345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCC
Q 048807 655 VIYNILIDSLCKNNQVELALSLMEEMKVKEV--RP---NTNTYNAMFKGLRQKNMLDKAFKLMDRMIE-HACHP 722 (757)
Q Consensus 655 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p 722 (757)
..+..+..++...|++++|.++++++....- +| +...+..+...+...|+.++|+..|++++. .|+.|
T Consensus 672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 672 NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 5677888999999999999999999986421 12 234566678889999999999999999974 24443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-26 Score=275.31 Aligned_cols=593 Identities=13% Similarity=0.075 Sum_probs=388.1
Q ss_pred CCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCc-chH----------------HHHH
Q 048807 126 RMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNT-HVR----------------NVLI 188 (757)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~----------------~~l~ 188 (757)
.+..+.|.+.+.++.... |.++.++..++..+.+.|+.++|.+.++++....|+. ..+ ..++
T Consensus 41 ~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 41 THREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred hCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 556677888888877654 7789999999999999999999999999987755543 221 3345
Q ss_pred HHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 189 DVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITR 268 (757)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~ 268 (757)
..+.+.|++++|++.|+++...+ |+.......+..... ......++|+..++++.+.. +.+...+..+...
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~----p~~~~la~~y~~~~~----~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~l 190 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA----PPELDLAVEYWRLVA----KLPAQRPEAINQLQRLNADY-PGNTGLRNTLALL 190 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC----CCChHHHHHHHHHHh----hCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 57889999999999999998753 333221111111111 12234578899999988874 6678888999999
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCC--HH-----------------HHH-------------------------------
Q 048807 269 FCRKGKTDEAWDVLHVLMKFDAPLE--AA-----------------SCN------------------------------- 298 (757)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~-----------------~~~------------------------------- 298 (757)
+.+.|+.++|++.++++.+...... .. .+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 9999999999999998865421100 00 011
Q ss_pred ---HHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHH-
Q 048807 299 ---ALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFN- 374 (757)
Q Consensus 299 ---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~- 374 (757)
.....+...|++++|...|++.++.. +.+...+..+...+.+.|++++|+..|+++++... -.++...|.
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p-----~~~~~~~~~~ 344 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDP-----HSSNRDKWES 344 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CccchhHHHH
Confidence 11233445566666666666666543 23455555666666666666666666666655430 001111111
Q ss_pred -----------HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 048807 375 -----------TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNV 443 (757)
Q Consensus 375 -----------~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 443 (757)
.....+.+.|++++|+..|+++. ...+.+...+..+...+...|++++|++.|+++.+... .+.
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al----~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~ 419 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR----QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNT 419 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCH
Confidence 12334555666666666666653 22334455555666666666666666666666665421 234
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 048807 444 VTLNTLVDGMCRHGRINSAVEFFQEVTRKGLC--------ANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVV 515 (757)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 515 (757)
..+..+...+. .++.++|..+++.+...... .....+..+...+...|++++|++.|++.++.. +.+...
T Consensus 420 ~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~ 497 (1157)
T PRK11447 420 NAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWL 497 (1157)
T ss_pred HHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 44445555443 34556666555443221000 011223445566667788888888888877664 445666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HH
Q 048807 516 YFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSV---------TY 586 (757)
Q Consensus 516 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~ 586 (757)
+..+...|.+.|++++|...++++.+... .+...+..+...+...++.++|...++.+......++.. .+
T Consensus 498 ~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 77777778888888888888887776532 244444445555667778888888777664332222211 12
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHh
Q 048807 587 NTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCK 666 (757)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 666 (757)
..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++.+. -+.+...+..++..|..
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3445667788888888888772 2446667788899999999999999999999882 34467789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHhcCCHH
Q 048807 667 NNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHAC--HP---DYISMEILTEWLSEAGQTE 741 (757)
Q Consensus 667 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p---~~~~~~~l~~~~~~~g~~~ 741 (757)
.|++++|++.++...+.. +.+...+..+..++...|++++|.+++++++...- .| +...+..+...+...|+.+
T Consensus 650 ~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred CCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 999999999999887642 23456677788899999999999999999986421 12 2246667788899999999
Q ss_pred HHHHHHhhc
Q 048807 742 KLKKFVQGY 750 (757)
Q Consensus 742 ~A~~~~~~~ 750 (757)
+|.+.+++.
T Consensus 729 ~A~~~y~~A 737 (1157)
T PRK11447 729 QALETYKDA 737 (1157)
T ss_pred HHHHHHHHH
Confidence 999998874
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-23 Score=234.97 Aligned_cols=574 Identities=13% Similarity=0.054 Sum_probs=347.4
Q ss_pred cCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhhHHHHH
Q 048807 125 ERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVL 204 (757)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 204 (757)
..|++++|+..|+.+.+.. |.+..++..|++.|.+.|+.++|+...+++....|+...+..++..+ ++.++|..+|
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 3588999999999998876 88899999999999999999999999999988666543333333323 8999999999
Q ss_pred HHHHhccCCCCCCcccHHHHHHHH------HhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCChhH
Q 048807 205 DEMLDRESQFPVNELTGDIVFYAL------MRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQL-ITRFCRKGKTDE 277 (757)
Q Consensus 205 ~~m~~~~~~~~p~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~ 277 (757)
+++...+ |+......++... .+. ...+++.+.++ .......|+..+.... ...|.+.|++++
T Consensus 132 e~l~~~~----P~n~~~~~~la~~~~~~~~l~y------~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 132 EELLAQQ----KACDAVPTLRCRSEVGQNALRL------AQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred HHHHHhC----CCChhHHHHHHHHhhccchhhh------hhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 9999864 5544443333333 111 11255555555 3333334456655555 999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHH
Q 048807 278 AWDVLHVLMKFDAPLEAASCNALLNALGR-EGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMI 356 (757)
Q Consensus 278 A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 356 (757)
|++.+.++.+.++. +......|..+|.+ .++ +++..++... +..+...+..++..|.+.|+.++|.++++++.
T Consensus 201 Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 201 ADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 99999999999765 67778888888888 477 8888886642 23477888999999999999999999999875
Q ss_pred hCCCCCcccccCCHhHH------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC
Q 048807 357 AGKETAEISVEPDVIIF------------------------------NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP 406 (757)
Q Consensus 357 ~~~~~~~~~~~~~~~~~------------------------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 406 (757)
..... .|+..+| -.++..+.+.+.++.++++.. . .|
T Consensus 275 ~~~~~-----~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~ 340 (987)
T PRK09782 275 PLFTT-----DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-T--------LP 340 (987)
T ss_pred ccccC-----CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-C--------CC
Confidence 43210 1111111 123566677777776665532 2 22
Q ss_pred CHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-C-CCCCHHHHH
Q 048807 407 NAVTYNCLINGF--CKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK-G-LCANAVTYT 482 (757)
Q Consensus 407 ~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~ 482 (757)
.... ..+..+ ...+...++.+.+..|.+.. +-+......+.-...+.|+.++|.++++..... + ...+.....
T Consensus 341 ~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 341 ANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred cchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 2221 112111 12244555555555555441 114444444444555666666666666666552 1 112333344
Q ss_pred HHHHHHHhcCC---HHHHHHH-------------------------HHHHHHcCCCC--CHhhHHHHHHHHHhcCChhHH
Q 048807 483 ILITAFCNVNN---FQEAIKW-------------------------FDDMSRAGCSA--DSVVYFTLISGLCQAGRMNDA 532 (757)
Q Consensus 483 ~li~~~~~~g~---~~~A~~~-------------------------~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A 532 (757)
-|+..|.+.+. ..++..+ +...... .++ +...|..+..++.. ++.++|
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 55555555544 2222222 1111111 122 45555555555554 566666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 533 SLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE 612 (757)
Q Consensus 533 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (757)
...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+...+.+.|++++|...+++.++.
T Consensus 496 i~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 496 LYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6666555544 244333333344445666777777666665544 344444555556666666777777777666654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048807 613 GLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTY 692 (757)
Q Consensus 613 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 692 (757)
. +.+...+..+.......|++++|...+++..+ ..|+...|..+..++.+.|+.++|+..+++..... +.+...+
T Consensus 572 ~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~ 646 (987)
T PRK09782 572 G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQ 646 (987)
T ss_pred C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3 11222232333333445677777777666665 23455566666666667777777777776666642 2244455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 693 NAMFKGLRQKNMLDKAFKLMDRMIEHACHP-DYISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
..+..++...|++++|+..++++++. .| +...+..+..++...|+.++|...+++
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666667777777776666653 34 335666666666666777776666665
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-21 Score=216.40 Aligned_cols=603 Identities=12% Similarity=0.011 Sum_probs=421.0
Q ss_pred CChhHHHHHHHHhhhCCCCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChh
Q 048807 86 PSSSRALSFFNFLQSNLPTEANTSSLSYAYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYD 165 (757)
Q Consensus 86 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 165 (757)
+++..|+..|+.+.+..|.. + .++ ..+..++...|.+++|+...++..+.. |.+...+..+... ++.+
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n--~----~~~-~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La~i----~~~~ 125 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN--I----PLT-LYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLAAI----PVEV 125 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC--H----HHH-HHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHHHh----ccCh
Confidence 89999999999999888762 1 122 234445666888999999999988764 5566666655333 8999
Q ss_pred HHHHHHHHhhccCCC-cchHHHHHHH--------HHhcCChhhHHHHHHHHHhccCCCCCCcccHHHH-HHHHHhhhhhc
Q 048807 166 YSLLVYNELDNNLRN-THVRNVLIDV--------LLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIV-FYALMRREHVK 235 (757)
Q Consensus 166 ~A~~~~~~~~~~~~~-~~~~~~l~~~--------~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~-~~~~~~~~~~~ 235 (757)
+|..+++++....|+ ..++..+... |.+. ++|.+.++ . +. ....|+....... ...+...
T Consensus 126 kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-l-r~-~~~~~~~~vL~L~~~rlY~~l---- 195 (987)
T PRK09782 126 KSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-D-AT-FAASPEGKTLRTDLLQRAIYL---- 195 (987)
T ss_pred hHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-H-hh-hCCCCCcHHHHHHHHHHHHHH----
Confidence 999999999875553 4455555554 6666 44444444 2 11 1112233322323 2222222
Q ss_pred cccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 048807 236 NSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCR-KGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMN 314 (757)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 314 (757)
...++++.++.++.+.+ +.+......|..+|.. .++ ++|..++....+ .+...+..++..|.+.|+.++|.
T Consensus 196 --~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk----~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 196 --KQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF----TDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred --hCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc----cCHHHHHHHHHHHHHCCCHHHHH
Confidence 33467899999999987 4456667788889988 477 888888664332 48889999999999999999999
Q ss_pred HHHHHHHHCCCC-CccchHHHH------------------------------HHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 048807 315 QLFTEMKENDIE-PSVVTFGTI------------------------------INRLCKLYRADEALEVFEKMIAGKETAE 363 (757)
Q Consensus 315 ~~~~~m~~~g~~-p~~~~~~~l------------------------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~ 363 (757)
++++++...... |...+|.-+ +..+.+.++++.+.++..
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 337 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA---------- 337 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc----------
Confidence 999988654222 333333222 344445555554443311
Q ss_pred ccccCCHhHHHHHHHHH--HHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-C
Q 048807 364 ISVEPDVIIFNTLIDGL--CKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE-G-V 439 (757)
Q Consensus 364 ~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~ 439 (757)
+.|.... ..++.. ...+...++.+.+..|.. ..+-+......+.-...+.|+.++|.++|+..... + -
T Consensus 338 --~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~----~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 409 (987)
T PRK09782 338 --TLPANEM--LEERYAVSVATRNKAEALRLARLLYQ----QEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDA 409 (987)
T ss_pred --CCCcchH--HHHHHhhccccCchhHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccc
Confidence 2333332 222222 234677777777777741 22345666666666678899999999999998873 1 2
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHh
Q 048807 440 TPNVVTLNTLVDGMCRHGR---INSAVEF----------------------FQEVTRK-GL-CA--NAVTYTILITAFCN 490 (757)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~~~~~-~~-~~--~~~~~~~li~~~~~ 490 (757)
.++.....-++..|.+.+. ..++..+ +...... +. ++ +...|..+..++..
T Consensus 410 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~ 489 (987)
T PRK09782 410 RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD 489 (987)
T ss_pred ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 2344455577888877766 2333222 1111111 11 23 67788888888877
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 491 VNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEV 570 (757)
Q Consensus 491 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 570 (757)
++.++|+..+.+.... .|+......+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|...
T Consensus 490 -~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 490 -TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred -CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 8899999988888776 356544444555567899999999999998665 45555677778889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 048807 571 LQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNV 650 (757)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 650 (757)
+++..+.+ +.+...+..+.......|++++|...+++.++. .|+...+..+..++.+.|++++|+..+++..+ ..
T Consensus 565 l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~ 639 (987)
T PRK09782 565 LQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LE 639 (987)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence 99999875 444444444445555679999999999999985 46788899999999999999999999999988 23
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHH
Q 048807 651 SPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEI 729 (757)
Q Consensus 651 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~ 729 (757)
+.+...++.+..++...|+.++|+..+++..+.. +-+...+..+..++...|++++|+..+++.++ +.|+. .+...
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~ 716 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPL 716 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhh
Confidence 3456688999999999999999999999999852 34677889999999999999999999999997 46766 55556
Q ss_pred HHHHHHhcCCHHHHHHHHhh
Q 048807 730 LTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 730 l~~~~~~~g~~~~A~~~~~~ 749 (757)
.........+++.|.+-+++
T Consensus 717 ~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 717 TPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 66667777777777776554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-21 Score=206.78 Aligned_cols=565 Identities=14% Similarity=0.111 Sum_probs=423.3
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC--cchHHHHHHHHHhcCChhhHHHHHHH
Q 048807 129 PESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRN--THVRNVLIDVLLRCDHDRDAFNVLDE 206 (757)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 206 (757)
.+.|...|....+.. |++.-..-.-+......|++..|+.+|.++....|. +...-.+...+.++|+.+.|+..|.+
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 466777777776543 555544433334445677999999999997643221 12233456778899999999999999
Q ss_pred HHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 048807 207 MLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLM 286 (757)
Q Consensus 207 m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 286 (757)
.++. .|..+.....+..+--. ..+......++.++....... +.|+++.+.|.+.|.-.|+++.++.+...+.
T Consensus 225 alqL----dp~~v~alv~L~~~~l~--~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 225 ALQL----DPTCVSALVALGEVDLN--FNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHhc----ChhhHHHHHHHHHHHHH--ccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 9885 45554433333333221 112223355666666655443 5688899999999999999999999999998
Q ss_pred hCCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc
Q 048807 287 KFDAP--LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEI 364 (757)
Q Consensus 287 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 364 (757)
+.... .-..+|-.+..+|-..|++++|..+|.+.....-..-+..+..|...|.+.|+++.+...|+++.+..
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~----- 372 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL----- 372 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-----
Confidence 75422 12456888999999999999999999998886421114456678899999999999999999999874
Q ss_pred cccCCHhHHHHHHHHHHHcC----CHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----h
Q 048807 365 SVEPDVIIFNTLIDGLCKVG----KQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMK----Q 436 (757)
Q Consensus 365 ~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~ 436 (757)
+.+..+...|...|...+ ..+.|..++.+. ....+.|...|-.+...+....-+.. +..|..+. .
T Consensus 373 --p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~----~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~ 445 (1018)
T KOG2002|consen 373 --PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV----LEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILES 445 (1018)
T ss_pred --cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH----HhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHH
Confidence 777888888988888876 557777777776 34457788899998888776554443 77766544 4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048807 437 EGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK---GLCANA------VTYTILITAFCNVNNFQEAIKWFDDMSRA 507 (757)
Q Consensus 437 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (757)
.+-.+.....|.+.......|++++|...|...... ...+|. .+-..+...+-..++.+.|.+.|..+++.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 455577889999999999999999999999998775 122233 22333666777788999999999999987
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHH
Q 048807 508 GCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIG-MTPNSVTY 586 (757)
Q Consensus 508 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 586 (757)
. +.-+..|..++......+...+|...+......+ ..++..+..+...+.+...+..|.+-|..+.+.- ..+|..+.
T Consensus 526 h-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 526 H-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred C-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 3 3334455556555556688899999999988764 4467778888889999999999999777766442 23577777
Q ss_pred HHHHHHHHH------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 048807 587 NTLISFLSK------------SGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654 (757)
Q Consensus 587 ~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 654 (757)
-.|.+.|.+ .+..++|+++|.+.++.. +-|...-|.+.-.++..|++.+|..+|.++.+. . ..+.
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa-~-~~~~ 680 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA-T-SDFE 680 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH-H-hhCC
Confidence 777776542 346789999999999864 347888899999999999999999999999983 2 2344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 655 VIYNILIDSLCKNNQVELALSLMEEMKVK-EVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 655 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
.+|..+.++|..+|++..|+++|+..... +-.-+......|..++.+.|++.+|.+.+..+...
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 56999999999999999999999998763 33457788999999999999999999999988864
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-21 Score=205.65 Aligned_cols=600 Identities=15% Similarity=0.098 Sum_probs=436.3
Q ss_pred ChhHHHHHHHHhhhCCCCCCCCCchHHHHHHHHHHH--HhcCCChHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHhcC
Q 048807 87 SSSRALSFFNFLQSNLPTEANTSSLSYAYQAVFELA--IRERMSPESLFDLYKACKD--QNIPLSINSATLLIRFFGKVS 162 (757)
Q Consensus 87 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g 162 (757)
+++.|.+.|+.+..++|. .+..+++.+ ..+++++..++.+|..+.. ...++++.+. ...++.++|
T Consensus 145 ~~~~A~a~F~~Vl~~sp~---------Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~ 213 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQSPD---------NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLG 213 (1018)
T ss_pred cHHHHHHHHHHHHhhCCc---------chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhcc
Confidence 367999999999999876 223445543 3567899999999999754 3445555443 457889999
Q ss_pred ChhHHHHHHHHhhccCCCcc-hHHHHHHHHHh---cCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhcccc
Q 048807 163 MYDYSLLVYNELDNNLRNTH-VRNVLIDVLLR---CDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSV 238 (757)
Q Consensus 163 ~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 238 (757)
+.+.|+..|.++....|..+ +.-.|.-+-.. ...+..|..++...-..+ |+.....+.+.... --..
T Consensus 214 ~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n----~~nP~~l~~LAn~f-----yfK~ 284 (1018)
T KOG2002|consen 214 MSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN----NENPVALNHLANHF-----YFKK 284 (1018)
T ss_pred chhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc----CCCcHHHHHHHHHH-----hhcc
Confidence 99999999999887655322 22222222222 234556777776665543 22222222232222 1123
Q ss_pred ChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 048807 239 TDEELVGLVSKFAEHGVF--PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQL 316 (757)
Q Consensus 239 ~~~~~~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 316 (757)
+...+..+.+.++..-.. --...|-.+..+|-..|++++|...|.+..+.+....+..+-.|...|.+.|+++.+...
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH
Confidence 345666666655544321 123357789999999999999999999999887553366777889999999999999999
Q ss_pred HHHHHHCCCCCccchHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHH
Q 048807 317 FTEMKENDIEPSVVTFGTIINRLCKLY----RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGL 392 (757)
Q Consensus 317 ~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 392 (757)
|+...+.. +.+..|...|...|...+ ..+.|..++.+..+.. +.|..+|-.+...|....-+.. +..
T Consensus 365 fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-------~~d~~a~l~laql~e~~d~~~s-L~~ 435 (1018)
T KOG2002|consen 365 FEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-------PVDSEAWLELAQLLEQTDPWAS-LDA 435 (1018)
T ss_pred HHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-------cccHHHHHHHHHHHHhcChHHH-HHH
Confidence 99999874 445677777777777664 5688888999888763 7788899999988876555444 777
Q ss_pred HHHHHHh-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCC------CHHHHHHHHHHHHHcCChHHH
Q 048807 393 IEQMRLR-LQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE---GVTP------NVVTLNTLVDGMCRHGRINSA 462 (757)
Q Consensus 393 ~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p------~~~~~~~li~~~~~~g~~~~A 462 (757)
+..+... ...+..+.....|.+...+...|++.+|...|...... ...+ ++.+--.+...+-..++.+.|
T Consensus 436 ~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A 515 (1018)
T KOG2002|consen 436 YGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVA 515 (1018)
T ss_pred HHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHH
Confidence 6655321 13344577888999999999999999999999988765 1222 333445567777888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048807 463 VEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEA 542 (757)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 542 (757)
.+.|..+++..+. -...|-.++.+....+...+|...+++....+ ..++..+..+...+.+...+..|.+-|....+.
T Consensus 516 ~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~ 593 (1018)
T KOG2002|consen 516 EEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKK 593 (1018)
T ss_pred HHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhh
Confidence 9999999987321 23344444444445578889999999988764 557777888888999999999998877766554
Q ss_pred C-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 543 G-FRPDIVCYNHLISGFCK------------KKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKM 609 (757)
Q Consensus 543 g-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (757)
- ..+|..+.-.|.+.|.+ .+..++|+++|.++++.. |.|...-|.+.-.++..|++.+|..+|.+.
T Consensus 594 ~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqV 672 (1018)
T KOG2002|consen 594 TSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQV 672 (1018)
T ss_pred hccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHH
Confidence 2 23578888778776643 356789999999999886 778899999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048807 610 VKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNT 689 (757)
Q Consensus 610 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 689 (757)
.+... .+..+|..+.++|..+|++..|+++|+...+...-..+..+...|..++.+.|.+.+|.+...........-..
T Consensus 673 rEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 673 REATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 98643 25567889999999999999999999999886776678889999999999999999999999988875322233
Q ss_pred HHHHHHHHHH------------------HHcCCHHHHHHHHHHHHHcC
Q 048807 690 NTYNAMFKGL------------------RQKNMLDKAFKLMDRMIEHA 719 (757)
Q Consensus 690 ~~~~~l~~~~------------------~~~g~~~~A~~~~~~~~~~g 719 (757)
+.+|..+... ...+..++|.++|.++...+
T Consensus 752 v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 752 VKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455433221 12245778888999887654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-24 Score=212.40 Aligned_cols=450 Identities=14% Similarity=0.131 Sum_probs=369.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
...|..-..+.|++++|++.....-..++. +....-.+-.++.+..+++...+--....+.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 445667777899999999987776666543 44555556677777777777666555555543 3456789999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHH-HHHHHHHHHH
Q 048807 342 LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVT-YNCLINGFCK 420 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~ 420 (757)
.|++++|+..++.+++.. +..+..|..+..++...|+.+.|.+.|.+... ..|+... ...+...+-.
T Consensus 129 rg~~~~al~~y~~aiel~-------p~fida~inla~al~~~~~~~~a~~~~~~alq-----lnP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-------PKFIDAYINLAAALVTQGDLELAVQCFFEALQ-----LNPDLYCARSDLGNLLKA 196 (966)
T ss_pred hchHHHHHHHHHHHHhcC-------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-----cCcchhhhhcchhHHHHh
Confidence 999999999999999875 55788999999999999999999999988741 2454433 3445556667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 421 SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKW 500 (757)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 500 (757)
.|++++|...+.+.++... --...|..|...+...|+...|++.|+++++..+. -...|-.|...|...+.+++|...
T Consensus 197 ~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred hcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHH
Confidence 8999999999999888632 23567899999999999999999999999987432 245788899999999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048807 501 FDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPD-IVCYNHLISGFCKKKMLDKAYEVLQEMEDIGM 579 (757)
Q Consensus 501 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (757)
|.+..... +...+.+..+...|..+|..+-|+..|++.++. .|+ ...|+.|..++-..|+..+|...|.+.+...
T Consensus 275 Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~- 350 (966)
T KOG4626|consen 275 YLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC- 350 (966)
T ss_pred HHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-
Confidence 99887763 445677888888999999999999999999987 444 6789999999999999999999999999874
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH-HHH
Q 048807 580 TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPT-VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT-VIY 657 (757)
Q Consensus 580 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~ 657 (757)
+....+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-.+|++++|+..+++..+ +.|+. ..|
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~ 425 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADAL 425 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHH
Confidence 556778899999999999999999999999984 454 56789999999999999999999999877 66764 489
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 048807 658 NILIDSLCKNNQVELALSLMEEMKVKEVRPN-TNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEILTEWLS 735 (757)
Q Consensus 658 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~ 735 (757)
+.++..|-..|+++.|+..+.+.+.. .|. ....+.|...|..+|+..+|++-|+++++ ++||. ..|..++.++.
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 99999999999999999999999874 454 45788999999999999999999999995 68887 77777877765
Q ss_pred hcCCH
Q 048807 736 EAGQT 740 (757)
Q Consensus 736 ~~g~~ 740 (757)
-..++
T Consensus 502 ~vcdw 506 (966)
T KOG4626|consen 502 IVCDW 506 (966)
T ss_pred HHhcc
Confidence 54433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-22 Score=202.80 Aligned_cols=383 Identities=18% Similarity=0.163 Sum_probs=319.1
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccch-HHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVT-FGT 334 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ 334 (757)
+--..+|..+.+.+-..|++++|+..++.+++..+. .+..|..+..++...|+.+.|.+.|.+.++. .|+... .+.
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~ 189 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSD 189 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcc
Confidence 334568888999999999999999999999998765 7899999999999999999999999999986 455444 344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 335 IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 335 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
+...+-..|++++|...+.++++.. +.=.++|+.|...+-..|+...|++.|++.. .-.+.-...|-.|
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~q-------p~fAiawsnLg~~f~~~Gei~~aiq~y~eAv----kldP~f~dAYiNL 258 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQ-------PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV----KLDPNFLDAYINL 258 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhC-------CceeeeehhcchHHhhcchHHHHHHHHHHhh----cCCCcchHHHhhH
Confidence 5556667899999999999998864 3446789999999999999999999999984 2223336789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 415 INGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNF 494 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 494 (757)
...|...+.+++|...+.+...... -..+++..+...|..+|.++-|+..|++.++..+. =...|+.|..++-..|++
T Consensus 259 GnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V 336 (966)
T KOG4626|consen 259 GNVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSV 336 (966)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccch
Confidence 9999999999999999998887532 25678888999999999999999999999987433 356899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPD-IVCYNHLISGFCKKKMLDKAYEVLQE 573 (757)
Q Consensus 495 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (757)
.+|...|.+.+... +....+.+.|...|...|.+++|..+|....+- .|. ....+.|...|-+.|++++|+..|++
T Consensus 337 ~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 337 TEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 99999999998864 556778899999999999999999999988875 343 45789999999999999999999999
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 048807 574 MEDIGMTPN-SVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPT-VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVS 651 (757)
Q Consensus 574 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 651 (757)
.+.. .|+ ...|+.+...|...|+.+.|.+.+.+.+.. .|. ...++.|...|-..|++.+|++-+++..+ ++
T Consensus 414 alrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk---lk 486 (966)
T KOG4626|consen 414 ALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK---LK 486 (966)
T ss_pred HHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc---cC
Confidence 9877 444 468999999999999999999999999885 454 56788899999999999999999999887 44
Q ss_pred CCH-HHHHHHHHHH
Q 048807 652 PNT-VIYNILIDSL 664 (757)
Q Consensus 652 p~~-~~~~~li~~~ 664 (757)
||. ..|..++.++
T Consensus 487 PDfpdA~cNllh~l 500 (966)
T KOG4626|consen 487 PDFPDAYCNLLHCL 500 (966)
T ss_pred CCCchhhhHHHHHH
Confidence 553 3566665554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-20 Score=204.43 Aligned_cols=432 Identities=15% Similarity=0.030 Sum_probs=302.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
.+......|.+.|++++|+..|+++++.. |+...|..+..+|.+.|++++|++.+.+.++.+ +.+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 45567888999999999999999999865 567889999999999999999999999999875 345678888999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK 420 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (757)
..|++++|+..|..+...+ ..+......++.-+.. ..+........ ...+++...+..+...+ .
T Consensus 206 ~lg~~~eA~~~~~~~~~~~-------~~~~~~~~~~~~~~l~----~~a~~~~~~~l----~~~~~~~~~~~~~~~~~-~ 269 (615)
T TIGR00990 206 GLGKYADALLDLTASCIID-------GFRNEQSAQAVERLLK----KFAESKAKEIL----ETKPENLPSVTFVGNYL-Q 269 (615)
T ss_pred HcCCHHHHHHHHHHHHHhC-------CCccHHHHHHHHHHHH----HHHHHHHHHHH----hcCCCCCCCHHHHHHHH-H
Confidence 9999999999988776543 1122222222221111 12222222221 11223333333333322 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH---HHHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCH
Q 048807 421 SGNIEKGLELFHLMKQEGVTPNV-VTLNTLVDG---MCRHGRINSAVEFFQEVTRKG--LCANAVTYTILITAFCNVNNF 494 (757)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~ 494 (757)
....+.+..-+....+. .++. ..+..+... ....+++++|.+.|+++.+.+ .+.....|+.+...+...|++
T Consensus 270 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 270 SFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred HccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 21122222112211111 1111 111111111 123478899999999998765 123456788888888999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEM 574 (757)
Q Consensus 495 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (757)
++|+..|++.++.. +.....|..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|...|++.
T Consensus 348 ~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka 425 (615)
T TIGR00990 348 LEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKS 425 (615)
T ss_pred HHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999988763 3446688888888999999999999999988764 335778888999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CC-
Q 048807 575 EDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNV-SP- 652 (757)
Q Consensus 575 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~p- 652 (757)
++.. +.+...+..+...+.+.|++++|+..|++.++.. +.+...++.+...+...|++++|++.|++..+...- .+
T Consensus 426 l~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~ 503 (615)
T TIGR00990 426 IDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM 503 (615)
T ss_pred HHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccc
Confidence 9875 5567788888899999999999999999988753 335778888999999999999999999998762110 00
Q ss_pred --CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 653 --NTV-IYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 653 --~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
+.. .++..+..+...|++++|.+++++..... +.+...+..++.++.+.|++++|+++|+++.+.
T Consensus 504 ~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 504 YMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 111 12222233444689999999999988753 234557888999999999999999999999864
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-19 Score=202.63 Aligned_cols=427 Identities=14% Similarity=0.079 Sum_probs=309.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHH
Q 048807 295 ASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFN 374 (757)
Q Consensus 295 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (757)
..+......|.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++++++.+ +.+..+|.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------p~~~~a~~ 198 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------PDYSKALN 198 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------CCCHHHHH
Confidence 34566778899999999999999999975 5788889999999999999999999999999875 56788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMC 454 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 454 (757)
.+..+|...|++++|+..|.... ... ..+......++..+.. ..+........+.. +++...+..+.. +.
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~---~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~ 268 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASC---IID-GFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YL 268 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---HhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HH
Confidence 99999999999999999887664 111 1121222222222211 22333333333332 122222333322 22
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCh
Q 048807 455 RHGRINSAVEFFQEVTRKGLCANAVTYTILITA---FCNVNNFQEAIKWFDDMSRAG--CSADSVVYFTLISGLCQAGRM 529 (757)
Q Consensus 455 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~ 529 (757)
.......+..-+....+.... ....+..+... ....+++++|.+.|++..+.+ .+.....+..+...+...|++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 269 QSFRPKPRPAGLEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred HHccCCcchhhhhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 222222222212211111000 00111111111 123478999999999998764 233556788888899999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 530 NDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKM 609 (757)
Q Consensus 530 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (757)
++|+..+++..+... .+...|..+...+...|++++|...|+++++.. +.+...|..+...+...|++++|...|++.
T Consensus 348 ~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka 425 (615)
T TIGR00990 348 LEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKS 425 (615)
T ss_pred HHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999988632 246688899999999999999999999999875 567889999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048807 610 VKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNT 689 (757)
Q Consensus 610 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 689 (757)
++.. +.+...+..+...+.+.|++++|+..|++..+ ..+.+...|+.++..+...|++++|++.|++.... .|+.
T Consensus 426 l~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~ 500 (615)
T TIGR00990 426 IDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKET 500 (615)
T ss_pred HHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCcc
Confidence 9864 33577788899999999999999999999987 23445778999999999999999999999999874 2321
Q ss_pred -H-------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 690 -N-------TYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 690 -~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
. .++..+..+...|++++|.++++++++. .|+. ..+..++..+...|++++|.+++++.
T Consensus 501 ~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 501 KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 1 1122222334479999999999999874 5655 67889999999999999999999874
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.8e-21 Score=202.05 Aligned_cols=303 Identities=15% Similarity=0.129 Sum_probs=222.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 048807 415 INGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCAN---AVTYTILITAFCNV 491 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 491 (757)
...+...|++++|++.|.++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ..++..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3445566777777777777776532 2455667777777777777777777777766432211 24566677777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 048807 492 NNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDI----VCYNHLISGFCKKKMLDKA 567 (757)
Q Consensus 492 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A 567 (757)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|...++.+.+.+..+.. ..+..++..+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888887777642 445667777777788888888888888777765433221 2355677778888899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 048807 568 YEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSS 647 (757)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 647 (757)
...|+++.+.. +.+...+..++..|.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~- 277 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE- 277 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 99998888764 4456677788888888999999999999988754222245678888889999999999999998877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCH
Q 048807 648 SNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQ---KNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 648 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
..|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.++|+.++++|+++++.|++
T Consensus 278 --~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 --EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred --hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 2366666788888999999999999999988874 6888888887777664 56888999999999887777666
Q ss_pred H
Q 048807 725 I 725 (757)
Q Consensus 725 ~ 725 (757)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 4
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-20 Score=198.11 Aligned_cols=236 Identities=14% Similarity=0.108 Sum_probs=113.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN----VVTLNT 448 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ 448 (757)
+..++..|.+.|++++|..+|+++. ...+.+..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLV----DEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH----cCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 4444444555555555555555442 11223344445555555555555555555555444322111 112333
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 048807 449 LVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGR 528 (757)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 528 (757)
++..+.+.|++++|...++++.+... .+...+..++..|.+.|++++|.++|+++.+.+......++..++.+|.+.|+
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 44444555555555555555554321 13334444555555555555555555555543211112334455555555555
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHH
Q 048807 529 MNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK---SGNFSAARRV 605 (757)
Q Consensus 529 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~ 605 (757)
+++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+
T Consensus 265 ~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~ 340 (389)
T PRK11788 265 EAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLL 340 (389)
T ss_pred HHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHH
Confidence 55555555555544 233333455555555555555555555555544 3455555555544443 3355555555
Q ss_pred HHHHHhCCCCCC
Q 048807 606 LKKMVKEGLVPT 617 (757)
Q Consensus 606 ~~~m~~~~~~p~ 617 (757)
+++|.+.++.|+
T Consensus 341 ~~~~~~~~~~~~ 352 (389)
T PRK11788 341 LRDLVGEQLKRK 352 (389)
T ss_pred HHHHHHHHHhCC
Confidence 555555444333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-18 Score=192.74 Aligned_cols=332 Identities=12% Similarity=0.057 Sum_probs=263.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcC
Q 048807 264 QLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLY 343 (757)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 343 (757)
.++..+.+.|++++|..+++..+...+. +...+..++.+....|++++|.+.|+++.+.. +.+...+..+...+.+.|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 3566777889999999999999887665 56666667777778999999999999999874 445677888888889999
Q ss_pred ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC
Q 048807 344 RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGN 423 (757)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (757)
++++|+..++++++.. +.+...+..++..+...|++++|...++.+. ...+.+...+..+ ..+...|+
T Consensus 125 ~~~~Ai~~l~~Al~l~-------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~----~~~P~~~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 125 QYATVADLAEQAWLAF-------SGNSQIFALHLRTLVLMDKELQAISLARTQA----QEVPPRGDMIATC-LSFLNKSR 192 (656)
T ss_pred CHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH----HhCCCCHHHHHHH-HHHHHcCC
Confidence 9999999999998864 5567788889999999999999999998774 2223344444444 34788899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHH
Q 048807 424 IEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQE----AIK 499 (757)
Q Consensus 424 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~ 499 (757)
+++|.+.++.+.+....++...+..+...+.+.|++++|...++++.+.... +...+..+...|...|++++ |..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 9999999999887644445555666677888999999999999999887543 67788888999999999885 789
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048807 500 WFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGM 579 (757)
Q Consensus 500 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (757)
.|++..+.. +.+...+..+...+.+.|++++|...+++..+.... +...+..+..+|.+.|++++|...|+++.+.+
T Consensus 272 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~- 348 (656)
T PRK15174 272 HWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK- 348 (656)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 999888764 556778889999999999999999999998886432 46677788889999999999999999988774
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048807 580 TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEG 613 (757)
Q Consensus 580 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 613 (757)
+.+...+..+..++...|+.++|...|++..+..
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2233344445677889999999999999988753
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-18 Score=193.06 Aligned_cols=421 Identities=15% Similarity=0.098 Sum_probs=247.6
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTII 336 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 336 (757)
.+.....-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|.++|++.++.. +.+...+..++
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344444445555666677777777777766532 2245556677777777777777777777766653 33444555666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN 416 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (757)
..+...|++++|+..++++++.. +.+.. +..+...+...|+.++|+..++++. ...+.+...+..+..
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al----~~~P~~~~~~~~la~ 158 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-------PDKAN-LLALAYVYKRAGRHWDELRAMTQAL----PRAPQTQQYPTEYVQ 158 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH----HhCCCCHHHHHHHHH
Confidence 66667777777777777776653 44455 6666666777777777777777663 233445555566666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 417 GFCKSGNIEKGLELFHLMKQEGVTPNVV------TLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCN 490 (757)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 490 (757)
.+...|..++|++.++.+.+ .|+.. ....++.... ......
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~------------------------------~~~~~~ 205 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSF------------------------------MPTRSE 205 (765)
T ss_pred HHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhc------------------------------ccccCh
Confidence 66666666667666655443 22200 0000000000 000111
Q ss_pred cCCH---HHHHHHHHHHHHc-CCCCCHh-hH----HHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh
Q 048807 491 VNNF---QEAIKWFDDMSRA-GCSADSV-VY----FTLISGLCQAGRMNDASLVVSKLKEAGFR-PDIVCYNHLISGFCK 560 (757)
Q Consensus 491 ~g~~---~~A~~~~~~m~~~-~~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~ 560 (757)
.+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+...|..
T Consensus 206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~ 284 (765)
T PRK10049 206 KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLK 284 (765)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHh
Confidence 1222 5566666666543 1112111 11 11123345567777777777777665422 221 12224556777
Q ss_pred cCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHH
Q 048807 561 KKMLDKAYEVLQEMEDIGMTP---NSVTYNTLISFLSKSGNFSAARRVLKKMVKEGL-----------VPT---VVTYGA 623 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~ 623 (757)
.|++++|...|+++.+..... .......+..++...|++++|..+++++.+... .|+ ...+..
T Consensus 285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~ 364 (765)
T PRK10049 285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL 364 (765)
T ss_pred cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence 777777777777766542110 123445555566777777777777777765421 122 224455
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHc
Q 048807 624 LIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPN-TNTYNAMFKGLRQK 702 (757)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 702 (757)
+...+...|++++|++.++++.. ..+.+...+..++..+...|++++|++.+++.... .|+ ...+...+..+...
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHh
Confidence 66777788888888888888776 33445667788888888888888888888888774 354 55666666777788
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048807 703 NMLDKAFKLMDRMIEHACHPDYISMEILT 731 (757)
Q Consensus 703 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 731 (757)
|++++|..+++++++. .|+......+-
T Consensus 441 ~~~~~A~~~~~~ll~~--~Pd~~~~~~~~ 467 (765)
T PRK10049 441 QEWRQMDVLTDDVVAR--EPQDPGVQRLA 467 (765)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 8888888888888863 56654444343
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-18 Score=188.78 Aligned_cols=358 Identities=13% Similarity=0.044 Sum_probs=287.2
Q ss_pred HHcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhH
Q 048807 270 CRKGKTDEAWDVLHVLMKFD--APLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADE 347 (757)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 347 (757)
.++.+++.-.-+|....+.. -.-+......++..+.+.|++++|..+++..+... +-+...+..++..+...|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 34555555444444433221 01123344556777889999999999999999874 3345566677778888999999
Q ss_pred HHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 348 ALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKG 427 (757)
Q Consensus 348 A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 427 (757)
|++.++++++.. |.+...+..+...+.+.|++++|.+.++++. .-.+.+...+..++..+...|++++|
T Consensus 95 A~~~l~~~l~~~-------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al----~l~P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 95 VLQVVNKLLAVN-------VCQPEDVLLVASVLLKSKQYATVADLAEQAW----LAFSGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred HHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHHCCChHHH
Confidence 999999999875 6678889999999999999999999999984 33456788899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048807 428 LELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRA 507 (757)
Q Consensus 428 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (757)
...++.+...... +...+..+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|+..++++.+.
T Consensus 164 ~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 164 ISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999988776433 33334333 347889999999999999988754445556666678899999999999999999987
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048807 508 GCSADSVVYFTLISGLCQAGRMND----ASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNS 583 (757)
Q Consensus 508 ~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 583 (757)
. +.+...+..+...+...|++++ |...|++..+... .+...+..+...+.+.|++++|...+++..+.. +.+.
T Consensus 242 ~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~ 318 (656)
T PRK15174 242 G-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLP 318 (656)
T ss_pred C-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 5 5677888899999999999986 8999999988743 367789999999999999999999999999875 5567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 584 VTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTV-VTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
..+..+...|.+.|++++|...++++...+ |+. ..+..+..++...|+.++|...|++..+
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788889999999999999999999999863 443 3444567788999999999999999877
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-18 Score=193.03 Aligned_cols=403 Identities=9% Similarity=0.043 Sum_probs=248.1
Q ss_pred ccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 048807 237 SVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQL 316 (757)
Q Consensus 237 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 316 (757)
.+..++|+.++.++.... +.+...+..+...+.+.|++++|.+++++.++..+. +...+..++..+...|++++|...
T Consensus 28 ~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 455678888888887632 556667999999999999999999999999988654 677888999999999999999999
Q ss_pred HHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 317 FTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 317 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
++++++.. +.+.. +..+...+...|+.++|+..++++++.. +.+...+..++..+...|..++|++.++..
T Consensus 106 l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-------P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 106 AKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-------PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999874 44555 8888889999999999999999999975 567777788899999999999999999876
Q ss_pred HHhhcCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCChH
Q 048807 397 RLRLQKGCMPNA------VTYNCLINGFC-----KSGNI---EKGLELFHLMKQE-GVTPNVV-TLNTLVDGMCRHGRIN 460 (757)
Q Consensus 397 ~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~~~li~~~~~~g~~~ 460 (757)
. . .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+..
T Consensus 177 ~----~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~------------ 238 (765)
T PRK10049 177 N----L--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR------------ 238 (765)
T ss_pred C----C--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH------------
Confidence 3 1 2321 01111111111 11112 4444444444432 1111111 0000
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048807 461 SAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCS-ADSVVYFTLISGLCQAGRMNDASLVVSKL 539 (757)
Q Consensus 461 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 539 (757)
.....+..+...|++++|+..|+++.+.+.+ |+. ....+...|...|++++|+..|+++
T Consensus 239 -------------------a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 239 -------------------ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred -------------------HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 0000011223344455555555554443311 111 1111234444555555555555554
Q ss_pred HHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHHcCCHHHH
Q 048807 540 KEAGFRP---DIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGM-----------TPN---SVTYNTLISFLSKSGNFSAA 602 (757)
Q Consensus 540 ~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A 602 (757)
.+..... .......+..++...|++++|...++.+.+... .|+ ...+..+...+...|++++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 4332110 012233344444555555555555555544310 122 12345566667777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 603 RRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 603 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
+++++++.... +.+...+..++..+...|++++|++.+++..+. .+.+...+..++..+.+.|++++|..+++++++
T Consensus 379 ~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 379 EMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777777653 335666777777777777777777777777661 122345566666677777778888888777776
Q ss_pred CCCCCCHHHHH
Q 048807 683 KEVRPNTNTYN 693 (757)
Q Consensus 683 ~g~~p~~~~~~ 693 (757)
. .|+.....
T Consensus 456 ~--~Pd~~~~~ 464 (765)
T PRK10049 456 R--EPQDPGVQ 464 (765)
T ss_pred h--CCCCHHHH
Confidence 4 45544333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.5e-16 Score=171.35 Aligned_cols=444 Identities=13% Similarity=0.096 Sum_probs=324.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
-+-...+.|+++.|++.|+++.+.++.-....+ .++..+...|+.++|+.++++..... +........+...+...|+
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence 344567999999999999999998755222344 88889999999999999999998321 1122223333557888899
Q ss_pred hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH
Q 048807 345 ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNI 424 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (757)
+++|+++|+++++.. +.+...+..++..|...++.++|++.++++. . ..|+...+..++..+...++.
T Consensus 118 yd~Aiely~kaL~~d-------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~----~-~dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 118 WDQALALWQSSLKKD-------PTNPDLISGMIMTQADAGRGGVVLKQATELA----E-RDPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc----c-cCcchHHHHHHHHHHHhcchH
Confidence 999999999999986 5667778888999999999999999999984 2 245555565555555556777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH------HHHHHHH---H--hcC-
Q 048807 425 EKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTY------TILITAF---C--NVN- 492 (757)
Q Consensus 425 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~li~~~---~--~~g- 492 (757)
.+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-... +.+....+ ..++..- . ...
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 77999999999984 336778888999999999999998776653321 11111111 1111100 0 111
Q ss_pred --CHHHHHHHHHHHHHc-C-CCCCHh----hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 493 --NFQEAIKWFDDMSRA-G-CSADSV----VYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKML 564 (757)
Q Consensus 493 --~~~~A~~~~~~m~~~-~-~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 564 (757)
-.+.|+.-++.+... + .++... ...-.+-++...|++.+++..|+.+...+.+....+-..+.++|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 245566666666542 1 122222 22334557888999999999999999888665667888999999999999
Q ss_pred HHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------------CCCHH-HHHHHH
Q 048807 565 DKAYEVLQEMEDIG-----MTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGL-------------VPTVV-TYGALI 625 (757)
Q Consensus 565 ~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~~-~~~~li 625 (757)
++|..+|+.+.... .+++......|..+|...+++++|..+++++.+... .||-. .+..++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 99999999987643 123444467888999999999999999999987311 12322 334556
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCC
Q 048807 626 HAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRP-NTNTYNAMFKGLRQKNM 704 (757)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 704 (757)
..+...|++.+|++.++++.. .-+-|......+.+.+...|...+|.+.++.+... .| +..+....+.++...|+
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQE 499 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhh
Confidence 778889999999999999977 44567888999999999999999999999777664 45 45566778888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048807 705 LDKAFKLMDRMIEHACHPDYISMEIL 730 (757)
Q Consensus 705 ~~~A~~~~~~~~~~g~~p~~~~~~~l 730 (757)
+++|..+.+...+. .|+......|
T Consensus 500 ~~~A~~~~~~l~~~--~Pe~~~~~~l 523 (822)
T PRK14574 500 WHQMELLTDDVISR--SPEDIPSQEL 523 (822)
T ss_pred HHHHHHHHHHHHhh--CCCchhHHHH
Confidence 99999999998874 5665444443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-14 Score=145.11 Aligned_cols=607 Identities=11% Similarity=0.035 Sum_probs=423.8
Q ss_pred CChhHHHHHHHHhhhCCCCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChh
Q 048807 86 PSSSRALSFFNFLQSNLPTEANTSSLSYAYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYD 165 (757)
Q Consensus 86 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 165 (757)
.|..+|.-++..+...+|. ++.-| +..+.++.. .|.+..|..+...-. ..+|.+..+|---++ .-..+
T Consensus 265 ~DikKaR~llKSvretnP~--hp~gW--IAsArLEEv---agKl~~Ar~~I~~GC-e~cprSeDvWLeaiR----Lhp~d 332 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK--HPPGW--IASARLEEV---AGKLSVARNLIMKGC-EECPRSEDVWLEAIR----LHPPD 332 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC--CCchH--HHHHHHHHH---hhHHHHHHHHHHHHH-hhCCchHHHHHHHHh----cCChH
Confidence 3567888888888888875 33333 444444432 223334433322211 124666666643332 23445
Q ss_pred HHHHHHHHhhccCCC-cchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHH
Q 048807 166 YSLLVYNELDNNLRN-THVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELV 244 (757)
Q Consensus 166 ~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (757)
.|..+...+....|+ +..|---++. ......=..++++.++. -|+++. +..+.+. .-..+.|.
T Consensus 333 ~aK~vvA~Avr~~P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~----iP~sv~---LWKaAVe------lE~~~dar 396 (913)
T KOG0495|consen 333 VAKTVVANAVRFLPTSVRLWLKAADL---ESDTKNKKRVLRKALEH----IPRSVR---LWKAAVE------LEEPEDAR 396 (913)
T ss_pred HHHHHHHHHHHhCCCChhhhhhHHhh---hhHHHHHHHHHHHHHHh----CCchHH---HHHHHHh------ccChHHHH
Confidence 555555555443333 3344222221 11223335566666663 455542 2222221 12234466
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH----
Q 048807 245 GLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEM---- 320 (757)
Q Consensus 245 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---- 320 (757)
-++.+.++. ++.+...|. +|.+..-++.|..++..+.+. ++.+...|.+-...=-++|+.+...++..+-
T Consensus 397 ilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L 470 (913)
T KOG0495|consen 397 ILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSEL 470 (913)
T ss_pred HHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 667766665 344444444 566777888999999888875 4558888888887778888888888877654
Q ss_pred HHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 048807 321 KENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRL 400 (757)
Q Consensus 321 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 400 (757)
...|+..+...|..=...|-..|..-.+..+....+..|.. -..--.+|+.-...|.+.+.++-|..+|...
T Consensus 471 ~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvE----eed~~~tw~~da~~~~k~~~~~carAVya~a---- 542 (913)
T KOG0495|consen 471 QANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVE----EEDRKSTWLDDAQSCEKRPAIECARAVYAHA---- 542 (913)
T ss_pred hhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccc----cchhHhHHhhhHHHHHhcchHHHHHHHHHHH----
Confidence 34577777777877777888888888888888888776511 1223468888888899999999999988887
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 048807 401 QKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVT 480 (757)
Q Consensus 401 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 480 (757)
..-.+.+...|...+..--..|..++-..+|+++... ++-....|......+-..|+...|..++.++.+.... +...
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seei 620 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEI 620 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHH
Confidence 3445667778888887777788889888899988876 3335666777777888889999999999998887554 7778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 481 YTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCK 560 (757)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 560 (757)
|-+-+.......+++.|..+|.+.... .++...|.--+....-.+..++|.+++++.++. ++.-...|..+...+-+
T Consensus 621 wlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHH
Confidence 888888888888999999999887765 567777777777777788899999999888876 22234578888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 561 KKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKI 640 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 640 (757)
.++++.|.+.|..-.+. +|...-.|-.|...--+.|.+-.|..++++..-++ +-+...|...|.+-.+.|..+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 99999998888776655 35555677777777788889999999999888775 33778888889998999999999988
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 048807 641 FKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHAC 720 (757)
Q Consensus 641 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 720 (757)
+.+..+ .++.+...|..-|....+.++-......+++ +.-|+.....+...+....++++|.+.|++.++ .
T Consensus 776 makALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~ 846 (913)
T KOG0495|consen 776 MAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--K 846 (913)
T ss_pred HHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--c
Confidence 888877 4555667788888887777775555544443 345777777788888888889999999998886 4
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 721 HPDY-ISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 721 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
.||. .+|.-+......+|.-++-.+.+++.
T Consensus 847 d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 847 DPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred CCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5665 78888888888888777666666654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-15 Score=167.68 Aligned_cols=434 Identities=12% Similarity=0.051 Sum_probs=227.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhccCCCcc-hHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhh
Q 048807 153 LLIRFFGKVSMYDYSLLVYNELDNNLRNTH-VRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRR 231 (757)
Q Consensus 153 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~ 231 (757)
.-+-...+.|+++.|+..|+++....|+.. ....++..+...|+.++|+..+++... |+.
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~------p~n------------- 99 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS------SMN------------- 99 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc------CCC-------------
Confidence 333445567777777777777766555431 222667777777777777777776642 111
Q ss_pred hhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 048807 232 EHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFK 311 (757)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 311 (757)
........++..|...|++++|+++|+++.+..+. +...+..++..|...++.+
T Consensus 100 -------------------------~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~ 153 (822)
T PRK14574 100 -------------------------ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGG 153 (822)
T ss_pred -------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHH
Confidence 11222333455677778888888888888887765 5666777777788888888
Q ss_pred HHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHH
Q 048807 312 RMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALG 391 (757)
Q Consensus 312 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 391 (757)
+|++.++++... .|+...+..++..+...++..+|++.++++++.. |.+...+..+...+.+.|-...|++
T Consensus 154 eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-------P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 154 VVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-------PTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred HHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 888888888776 3454445444444444556656888888888764 5567777777888888888888877
Q ss_pred HHHHHHHhhcCCCCCCHHHH------HHHHHHH---H--HcC---CHHHHHHHHHHHHhC-CCCCC-HHHH----HHHHH
Q 048807 392 LIEQMRLRLQKGCMPNAVTY------NCLINGF---C--KSG---NIEKGLELFHLMKQE-GVTPN-VVTL----NTLVD 451 (757)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~------~~li~~~---~--~~g---~~~~A~~~~~~m~~~-g~~p~-~~~~----~~li~ 451 (757)
+..+-. .-..+...-+ ..+++.- . ..+ -.+.|+.-++.+... +..|. ...| .-.+-
T Consensus 225 l~~~~p----~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 225 LAKENP----NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred HHHhCc----cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHH
Confidence 766542 1111111111 0000000 0 001 123333334443331 11121 1111 11233
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHhhHHHHHHHHHhc
Q 048807 452 GMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAG-----CSADSVVYFTLISGLCQA 526 (757)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~ 526 (757)
++...|+..++++.|+.+...+.+....+--.+.++|...++.++|+.+|+.+.... .+++......|.-++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 444555555555555555555543333344555555555555555555555554421 111222234455555555
Q ss_pred CChhHHHHHHHHHHHCCC-------------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 527 GRMNDASLVVSKLKEAGF-------------RPDI-VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISF 592 (757)
Q Consensus 527 g~~~~A~~~~~~~~~~g~-------------~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 592 (757)
+++++|..+++.+.+... .||- ..+..++..+...|++.+|++.++++.... |-|......+.+.
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v 459 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASI 459 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 555555555555554211 1111 112233444445555555555555554443 4444555555555
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 593 LSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
+...|.+.+|++.++...... +-+..+....+.++...|++++|..+.+.+.+
T Consensus 460 ~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 460 YLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 555555555555554443321 12333444444445555555555555555444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-14 Score=152.46 Aligned_cols=637 Identities=14% Similarity=0.103 Sum_probs=412.6
Q ss_pred CChhHHHHHHHHhhhCCCCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChh
Q 048807 86 PSSSRALSFFNFLQSNLPTEANTSSLSYAYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYD 165 (757)
Q Consensus 86 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 165 (757)
|+.+.|...+..+.++.|-.. ..|.. |+.++..+|+.++++...-.+... -|.+..-|..+.....+.|+++
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~------~ay~t-L~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNP------IAYYT-LGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred CCHHHHHHHHHHHHHhCccch------hhHHH-HHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHH
Confidence 899999999999999887521 12222 566778889999998765544443 4888899999999999999999
Q ss_pred HHHHHHHHhhccCCC-cchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhh-hhhccccChHHH
Q 048807 166 YSLLVYNELDNNLRN-THVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRR-EHVKNSVTDEEL 243 (757)
Q Consensus 166 ~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 243 (757)
.|.-+|.++....|. .-..-.-..+|-+.|....|..-|.++...++ |..+ ..+.....+. ..+-.....+.|
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p---~~d~--er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP---PVDI--ERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC---chhH--HHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999875443 33334457889999999999999999988643 3322 2222111110 001111223566
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH-------------------------
Q 048807 244 VGLVSKFAEH-GVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASC------------------------- 297 (757)
Q Consensus 244 ~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------------- 297 (757)
.+.++..... +-..+...++.++..|.+...++.|......+..+...+|..-|
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 6666555542 22445667889999999999999999888777662222221111
Q ss_pred -HHHHHHHHHcCChhHHHHHHHHHHHCCCCC--ccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHH
Q 048807 298 -NALLNALGREGDFKRMNQLFTEMKENDIEP--SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFN 374 (757)
Q Consensus 298 -~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (757)
--+.-++.+....+....+.....+..+.| +...|..+..+|...|++.+|+.+|..+.... ...+...|-
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~------~~~~~~vw~ 453 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE------GYQNAFVWY 453 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc------cccchhhhH
Confidence 122333444555555555555566665333 45668889999999999999999999998765 455678999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------CCCCCCHHHH
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQ--------EGVTPNVVTL 446 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~~~ 446 (757)
.+..+|...|.+++|.+.++... .-.+.+...-.+|...+.+.|+.++|.+.+..+.. .+..|+....
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl----~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVL----ILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH----hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 99999999999999999999984 34466777888899999999999999999998652 2344555556
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-
Q 048807 447 NTLVDGMCRHGRINSAVEFFQEVTRKG----------------------LCANAVTYTILITAFCNVNNFQEAIKWFDD- 503 (757)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~- 503 (757)
....+.+.+.|+.++-..+-..|+... ..........++.+-.+.++.....+-...
T Consensus 530 ~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~ 609 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDG 609 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccch
Confidence 666778888898888665555544321 011111222233333333332222111111
Q ss_pred -----HHHcCCCCCH--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHH
Q 048807 504 -----MSRAGCSADS--VVYFTLISGLCQAGRMNDASLVVSKLKEAGF-RPDIV----CYNHLISGFCKKKMLDKAYEVL 571 (757)
Q Consensus 504 -----m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~----~~~~li~~~~~~g~~~~A~~~~ 571 (757)
-...|...+. ..+.-++..+++.+++++|+.+...+.+... ..+.. .-...+.+.+..+++..|...+
T Consensus 610 ~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~l 689 (895)
T KOG2076|consen 610 TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYL 689 (895)
T ss_pred hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 1111211121 2345677788999999999999888876532 11222 2244556677899999999999
Q ss_pred HHHHhC-CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 048807 572 QEMEDI-GM---TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSS 647 (757)
Q Consensus 572 ~~~~~~-~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 647 (757)
+.|... +. +--...|+...+...+.++-.--.+.+..+......-+......-.+-....+.+.-|+..+-++..
T Consensus 690 R~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~- 768 (895)
T KOG2076|consen 690 RSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR- 768 (895)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH-
Confidence 998865 11 2223456656666666665544445554444332111122222233445677889999998877766
Q ss_pred CCCCCCHHHHH-HHHHHHHh----------cCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 648 SNVSPNTVIYN-ILIDSLCK----------NNQVELALSLMEEMKVKEV-RPNTNTYNAMFKGLRQKNMLDKAFKLMDRM 715 (757)
Q Consensus 648 ~~~~p~~~~~~-~li~~~~~----------~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (757)
..|+....+ +++-++.+ +-.+-++..++++..+... .-..+.+-.++.+|-..|-..-|..+|++.
T Consensus 769 --~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekv 846 (895)
T KOG2076|consen 769 --QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKV 846 (895)
T ss_pred --hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 335533333 33333322 1234556677766665321 124456777999999999999999999999
Q ss_pred HHcCCCC---------C----HHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 716 IEHACHP---------D----YISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 716 ~~~g~~p---------~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
++. .| + ...-.+|.-.|.+.|+.+.|+++++++
T Consensus 847 L~~--~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 847 LEV--SPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred hCC--CccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 963 22 1 123334666788999999999999875
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-13 Score=138.43 Aligned_cols=553 Identities=11% Similarity=0.059 Sum_probs=430.9
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCC-cchHHHHHHHHHhcCChhhHHHHHHHH
Q 048807 129 PESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRN-THVRNVLIDVLLRCDHDRDAFNVLDEM 207 (757)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 207 (757)
++.+..+...+.+. +|.++..|---+..= .+...-..++.++.+..|+ +..|-..+ .....++|+.++.+.
T Consensus 331 ~d~aK~vvA~Avr~-~P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~iP~sv~LWKaAV----elE~~~darilL~rA 402 (913)
T KOG0495|consen 331 PDVAKTVVANAVRF-LPTSVRLWLKAADLE---SDTKNKKRVLRKALEHIPRSVRLWKAAV----ELEEPEDARILLERA 402 (913)
T ss_pred hHHHHHHHHHHHHh-CCCChhhhhhHHhhh---hHHHHHHHHHHHHHHhCCchHHHHHHHH----hccChHHHHHHHHHH
Confidence 34455555555444 366665553222211 1111123466665554443 44565443 456677799888888
Q ss_pred HhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-
Q 048807 208 LDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLM- 286 (757)
Q Consensus 208 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~- 286 (757)
.+ +.|.+.. +.-++.+. .+++.+...+.+..+. ++-+...|.+-...=-.+|..+....+.++.+
T Consensus 403 ve----ccp~s~d---LwlAlarL------etYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~ 468 (913)
T KOG0495|consen 403 VE----CCPQSMD---LWLALARL------ETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLS 468 (913)
T ss_pred HH----hccchHH---HHHHHHHH------HHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66 5666644 33333332 3346777777777665 78899999888888889999999888887644
Q ss_pred ---hCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--ccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 048807 287 ---KFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEP--SVVTFGTIINRLCKLYRADEALEVFEKMIAGKET 361 (757)
Q Consensus 287 ---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 361 (757)
..|+..+...|..=...+-..|..-.+..+....+.-|+.- -..||..-...|.+.+.++-|+.+|...++.
T Consensus 469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--- 545 (913)
T KOG0495|consen 469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--- 545 (913)
T ss_pred HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh---
Confidence 46777888999999999999999999999999988877653 2468899999999999999999999999986
Q ss_pred CcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 048807 362 AEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTP 441 (757)
Q Consensus 362 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 441 (757)
++.+...|...+..--..|..++-..+|++. ...++.....|.....-+-..|++..|..++.+..+....
T Consensus 546 ----fp~k~slWlra~~~ek~hgt~Esl~Allqka----v~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn- 616 (913)
T KOG0495|consen 546 ----FPCKKSLWLRAAMFEKSHGTRESLEALLQKA----VEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN- 616 (913)
T ss_pred ----ccchhHHHHHHHHHHHhcCcHHHHHHHHHHH----HHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-
Confidence 4777888988888888899999999999998 5567778888999999999999999999999999987544
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 048807 442 NVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLIS 521 (757)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 521 (757)
+...|..-+..-....+++.|..+|.+.... .++..+|.--+...--.++.++|++++++.++. ++.-...|..+..
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQ 693 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhH
Confidence 7788999999999999999999999998875 567788887777777789999999999998876 2334557888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048807 522 GLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSA 601 (757)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 601 (757)
.+-+.++.+.|...|..-.+. ++..+..|..+...--+.|.+-.|..++++..-.+ |.+...|-..|.+-.+.|..++
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHH
Confidence 899999999999988876665 34466788888888889999999999999998876 7788999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 602 ARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMK 681 (757)
Q Consensus 602 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 681 (757)
|..+..++++. ++.+...|..-|....+.++-..+...+++.. -|......+...+....++++|.+.|.+.+
T Consensus 772 a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce------~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 772 AELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE------HDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc------CCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 45567788888888777777666666665443 466678888889999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 048807 682 VKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEIL 730 (757)
Q Consensus 682 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l 730 (757)
..+ +.+-.+|..+...+.++|.-++-.+++.+... ..|.+ ..|.++
T Consensus 845 k~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 845 KKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred ccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHH
Confidence 863 33557888888999999998888888888874 46765 445444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-14 Score=148.71 Aligned_cols=620 Identities=12% Similarity=0.080 Sum_probs=336.3
Q ss_pred HHHHHHHHH--HhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccC-CCcchHHHHHHH
Q 048807 114 AYQAVFELA--IRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNL-RNTHVRNVLIDV 190 (757)
Q Consensus 114 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~ 190 (757)
....+++.+ ...+|+.++|..++..+++.. |....+|-+|...|-..|+.++++..+-.+.... .|...|-.+...
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 355556543 244689999999998888765 7889999999999999999999998877666543 345689999999
Q ss_pred HHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHH----HHH
Q 048807 191 LLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLT----QLI 266 (757)
Q Consensus 191 ~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~li 266 (757)
..+.|.++.|+-.|.++++.+ |...-+..--..++ .+.+....|...+.++.....+.|..-.- ..+
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~----p~n~~~~~ers~L~-----~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQAN----PSNWELIYERSSLY-----QKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcC----CcchHHHHHHHHHH-----HHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 999999999999999998864 33322111111111 11222344555555555443222222222 234
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccc---------------
Q 048807 267 TRFCRKGKTDEAWDVLHVLMKFDA-PLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVV--------------- 330 (757)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------------- 330 (757)
..|...++.+.|++.++.....+. ..+...++.++..|.+...++.|......+..+...+|..
T Consensus 288 ~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~ 367 (895)
T KOG2076|consen 288 HYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNAL 367 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccc
Confidence 445556666666666666665221 1234456666666666666666666666665522222211
Q ss_pred -------hHH----HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 048807 331 -------TFG----TIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLR 399 (757)
Q Consensus 331 -------~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 399 (757)
.|. .+.-++......+....+.....+.+. .+.-++..|.-+.++|...|++.+|.++|..+.
T Consensus 368 ~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~----~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~-- 441 (895)
T KOG2076|consen 368 CEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV----WVSDDVDLYLDLADALTNIGKYKEALRLLSPIT-- 441 (895)
T ss_pred ccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC----ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh--
Confidence 111 122233334444444444444444331 012234456666666666666666666666664
Q ss_pred hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-------
Q 048807 400 LQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK------- 472 (757)
Q Consensus 400 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------- 472 (757)
....-.+...|-.+..+|...|..++|.+.|+..+... +-+...-.+|...+.+.|+.++|.+.+..+..-
T Consensus 442 -~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 442 -NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred -cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 22222345566666666666666666666666666542 113344455555666666666666666664321
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC----
Q 048807 473 -GLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGC-----SADSVVYFTLISGLCQAGRMNDASLVVSKLKEA---- 542 (757)
Q Consensus 473 -~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 542 (757)
+..|+........+.+.+.|+.++=+.+-..|+.... .|+..--.....+-...+...+-......+...
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 599 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDD 599 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCch
Confidence 1223333333445556666666665555555443210 110000000000000011111111111111111
Q ss_pred -------------------CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHHHc
Q 048807 543 -------------------GFRPDI--VCYNHLISGFCKKKMLDKAYEVLQEMEDIGM-TPNSV----TYNTLISFLSKS 596 (757)
Q Consensus 543 -------------------g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~----~~~~li~~~~~~ 596 (757)
|..-+. ..+..++..+++.+++++|+.+...+.+... ..+.. .-...+.+....
T Consensus 600 ~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~ 679 (895)
T KOG2076|consen 600 NVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYA 679 (895)
T ss_pred HHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhc
Confidence 100000 1235566677888888888888777765421 11111 123344556677
Q ss_pred CCHHHHHHHHHHHHhC-CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048807 597 GNFSAARRVLKKMVKE-GLV--P-TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVEL 672 (757)
Q Consensus 597 g~~~~A~~~~~~m~~~-~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 672 (757)
+++..|...++.|... +.. | -...|+...+...+.|+-.--.+.+..+.. .....+.......+.-....+.+.-
T Consensus 680 ~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~-~~~~~~~~l~~i~gh~~~~~~s~~~ 758 (895)
T KOG2076|consen 680 RDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV-KNKDDTPPLALIYGHNLFVNASFKH 758 (895)
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCccCCcceeeeechhHhhccchHH
Confidence 8888888888887764 111 1 123444444455555544333344433332 1111112223333444556788889
Q ss_pred HHHHHHHHHhCCCCCCHHHHH-HHHHHHHH----------cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCH
Q 048807 673 ALSLMEEMKVKEVRPNTNTYN-AMFKGLRQ----------KNMLDKAFKLMDRMIEHACH-PDYISMEILTEWLSEAGQT 740 (757)
Q Consensus 673 A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~----------~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~ 740 (757)
|+..+-+.-.. .|+....+ +++.++.+ +-..-.++.++.+..+.... .-..++.+++.+|...|-+
T Consensus 759 Al~~y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~ 836 (895)
T KOG2076|consen 759 ALQEYMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLV 836 (895)
T ss_pred HHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccH
Confidence 99877776653 46643333 33333322 12244567777666653221 2348888899999999999
Q ss_pred HHHHHHHhhc-hhcc
Q 048807 741 EKLKKFVQGY-AVSA 754 (757)
Q Consensus 741 ~~A~~~~~~~-~~~~ 754 (757)
.-|.+++++. ...|
T Consensus 837 ~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 837 HLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHHHHhCCCc
Confidence 9999999884 4444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-15 Score=148.73 Aligned_cols=471 Identities=14% Similarity=0.145 Sum_probs=320.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCCcc------
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASC-NALLNALGREGDFKRMNQLFTEMKENDIEPSV------ 329 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------ 329 (757)
..-.+...|..-|.......+|+..++-+.+...-|+.-.. ..+...+.+..+|.+|++.|+-.+.. .|++
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~ri 276 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRI 276 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHH
Confidence 34455666777888888889999999888877665665433 34567788888999999998877765 2332
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---------
Q 048807 330 VTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRL--------- 400 (757)
Q Consensus 330 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------- 400 (757)
...+.+...+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+-++..+.|.+|....
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--------~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi 348 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--------APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI 348 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--------CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc
Confidence 23444555677889999999999988874 5777777677777777889888888888875210
Q ss_pred cCCCCCCHHHHHHHH-----HHHHHcC--CHHHHHHHHHHHHhCCCCCCHHH-------------HH--------HHHHH
Q 048807 401 QKGCMPNAVTYNCLI-----NGFCKSG--NIEKGLELFHLMKQEGVTPNVVT-------------LN--------TLVDG 452 (757)
Q Consensus 401 ~~~~~~~~~~~~~li-----~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~-------------~~--------~li~~ 452 (757)
.+...|+....+.-| .-.-+.+ +.++++-.-.++..--+.|+... +. .-...
T Consensus 349 ~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~ 428 (840)
T KOG2003|consen 349 KEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGE 428 (840)
T ss_pred CCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence 111223333333222 2222211 22333322223322112222110 11 11234
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChh
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFC-N-VNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMN 530 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 530 (757)
+.+.|+++.|.+++.-..+..-+.-...-+.|-..+. + -.++..|.+.-+..+..+ .-+......-...-...|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 6788999999999888777643322223333332222 2 235777777766665432 223333333333445689999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 531 DASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMV 610 (757)
Q Consensus 531 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (757)
+|.+.|++.+...-. .....-.+.-.+-..|++++|++.|-++... +..+..+...+...|....+..+|++++.+..
T Consensus 508 ka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 508 KAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 999999999876322 2222333444577899999999999887543 23467777888999999999999999999887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048807 611 KEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTN 690 (757)
Q Consensus 611 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 690 (757)
.. ++.|......|...|-+.|+-.+|++.+-.--. -.+.|..+...|..-|....-+++|+.+|++..- +.|+..
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 65 566889999999999999999999998765444 3556788888899999999999999999999865 689999
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 691 TYNAMFKGL-RQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFV 747 (757)
Q Consensus 691 ~~~~l~~~~-~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 747 (757)
-|..++..| .+.|++++|.++|+....+ ++.|.....-|++.+...|. .++.++-
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~ 716 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYA 716 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHH
Confidence 998877655 6789999999999999875 77788888889988888774 3344433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-12 Score=129.20 Aligned_cols=471 Identities=12% Similarity=0.104 Sum_probs=263.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...|...+.+=.++..+..|..++++++..-|.. ...|-..+.+=-..|+...|.++|++..+- .|+...|.+.|+.
T Consensus 107 itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV-dqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~f 183 (677)
T KOG1915|consen 107 ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV-DQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKF 183 (677)
T ss_pred chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH-HHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHH
Confidence 3455555555566666666666666666543221 234444444445556666666666666653 5666666666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGF 418 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (757)
-.+....+.|..++++.+- +.|++.+|.-.+..-.++|....|..+++...+.... ...+...+++....-
T Consensus 184 ElRykeieraR~IYerfV~--------~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-d~~~e~lfvaFA~fE 254 (677)
T KOG1915|consen 184 ELRYKEIERARSIYERFVL--------VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD-DEEAEILFVAFAEFE 254 (677)
T ss_pred HHHhhHHHHHHHHHHHHhe--------ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHH
Confidence 6666666666666666554 4566666666666666666666666666665432111 112233444444444
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChH---HHHH-----HHHHHHHCCCCCCHHHHHHHHHHH
Q 048807 419 CKSGNIEKGLELFHLMKQEGVTPN--VVTLNTLVDGMCRHGRIN---SAVE-----FFQEVTRKGLCANAVTYTILITAF 488 (757)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~---~A~~-----~~~~~~~~~~~~~~~~~~~li~~~ 488 (757)
.++..++.|.-+|+-.+++ ++.+ ...|......--+-|+.. +++- -|+.+++.+. .|-.+|-..+..-
T Consensus 255 e~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~ 332 (677)
T KOG1915|consen 255 ERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLE 332 (677)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHH
Confidence 4556666666666666654 2212 223333333323334332 2221 1333444332 2556666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH--hhHHHHHH--------HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048807 489 CNVNNFQEAIKWFDDMSRAGCSADS--VVYFTLIS--------GLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGF 558 (757)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~--------~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 558 (757)
...|+.+...++|++.+.. ++|-. ..|...|- .-....+.+.+.++|+..++. ++...+|+..+--+|
T Consensus 333 e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmy 410 (677)
T KOG1915|consen 333 ESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMY 410 (677)
T ss_pred HhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHH
Confidence 6667777777777777654 33321 11211111 112456677777777777763 343445554444333
Q ss_pred H----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 559 C----KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHV 634 (757)
Q Consensus 559 ~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 634 (757)
+ ++.++..|.+++...+.. .|...++...|..-.+.++++.+..++++.++-+ +-+..+|......-...|+.
T Consensus 411 A~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~Lgdt 487 (677)
T KOG1915|consen 411 AQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDT 487 (677)
T ss_pred HHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhH
Confidence 3 566777777777766643 5666777777777777777777777777777754 22566666666666677777
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----HcC------
Q 048807 635 DEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLR-----QKN------ 703 (757)
Q Consensus 635 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-----~~g------ 703 (757)
+.|..+|.-......+......|-+.|+.-...|.++.|..+++++++. .+....|.++...-. +.|
T Consensus 488 dRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~ 565 (677)
T KOG1915|consen 488 DRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAEL 565 (677)
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhh
Confidence 7777777776664333334456667777777777777777777777764 233445555544322 223
Q ss_pred -----CHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHH----HhcCCHHHHHHHHhhch
Q 048807 704 -----MLDKAFKLMDRMIEH--ACHPDYISMEILTEWL----SEAGQTEKLKKFVQGYA 751 (757)
Q Consensus 704 -----~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~ 751 (757)
....|.++|+++... ...| ..--..|+.+. ...|........-.+||
T Consensus 566 e~~~~~~~~AR~iferAn~~~k~~~~-KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 566 EITDENIKRARKIFERANTYLKESTP-KEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred hcchhHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 455677777776432 1222 22222333333 23465555555555554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.6e-15 Score=142.14 Aligned_cols=484 Identities=14% Similarity=0.140 Sum_probs=315.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhc--cCCCc-chHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccH
Q 048807 145 PLSINSATLLIRFFGKVSMYDYSLLVYNELDN--NLRNT-HVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTG 221 (757)
Q Consensus 145 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~ 221 (757)
..+..+...|.+.|....+..+|+..|+-+.. ..||. ..--.+++.+.+...+.+|+++|+-.+.. .|...-
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq----vpsink- 272 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ----VPSINK- 272 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh----ccccch-
Confidence 34556677788889889999999988887654 24444 23345678889999999999999877663 232210
Q ss_pred HHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 222 DIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALL 301 (757)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 301 (757)
+ .-....+.+...+.+.|.+++|+..|+...+.. |+..+-..|+
T Consensus 273 -------------------~---------------~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~ 316 (840)
T KOG2003|consen 273 -------------------D---------------MRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLI 316 (840)
T ss_pred -------------------h---------------hHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhh
Confidence 0 011234445556778899999999999988864 5655544455
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCccchH--------HHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCC
Q 048807 302 NALGREGDFKRMNQLFTEMKENDIEPSVVTF--------GTIINRLCKL-----------YRADEALEVFEKMIAGKETA 362 (757)
Q Consensus 302 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~ 362 (757)
-++..-|+.++..+.|.+|+.--..||..-| ..|+.--.+. .+.++++-.-.+++.--
T Consensus 317 i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapv--- 393 (840)
T KOG2003|consen 317 ICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPV--- 393 (840)
T ss_pred hhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccc---
Confidence 5555678999999999999864322332211 2222211111 11122222222222111
Q ss_pred cccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048807 363 EISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN 442 (757)
Q Consensus 363 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 442 (757)
+.|+-.. +| +-.++.++.-. .. +.-...-..-..-|.++|+++.|+++++-+.+..-+.-
T Consensus 394 ---i~~~fa~------g~------dwcle~lk~s~---~~--~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~ 453 (840)
T KOG2003|consen 394 ---IAPDFAA------GC------DWCLESLKASQ---HA--ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA 453 (840)
T ss_pred ---cccchhc------cc------HHHHHHHHHhh---hh--hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh
Confidence 2222211 11 11122222111 00 00001111223457789999999999998887643322
Q ss_pred HHHHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH--
Q 048807 443 VVTLNTLVDGMCR--HGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFT-- 518 (757)
Q Consensus 443 ~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-- 518 (757)
...-+.|-..+.- -.++.+|.++-+..+...- -+......-...-...|++++|...|++.+.. |..+-.+
T Consensus 454 saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~n----dasc~ealf 528 (840)
T KOG2003|consen 454 SAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNN----DASCTEALF 528 (840)
T ss_pred HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcC----chHHHHHHH
Confidence 3333333333322 3456777777666654321 13333333333444678999999999999876 3333333
Q ss_pred -HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 519 -LISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSG 597 (757)
Q Consensus 519 -li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 597 (757)
+.-.+-..|+.++|+..|-++... +..+......+.+.|....+..+|++++.+.... ++.|+...+.|...|-+.|
T Consensus 529 niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqeg 606 (840)
T KOG2003|consen 529 NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEG 606 (840)
T ss_pred HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhccc
Confidence 333567889999999998776543 2336777888899999999999999999888765 4778999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH-hcCCHHHHHHH
Q 048807 598 NFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLC-KNNQVELALSL 676 (757)
Q Consensus 598 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~ 676 (757)
+-.+|.+.+-+--+. ++-+..+..-|...|....-+++|+.+|++..- +.|+..-|..++..|. +.|++.+|.++
T Consensus 607 dksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal---iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 607 DKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL---IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred chhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh---cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 999999987765553 456788888888888888889999999998754 6799999998876654 67999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 677 MEEMKVKEVRPNTNTYNAMFKGLRQKNM 704 (757)
Q Consensus 677 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 704 (757)
++....+ ++-|...+.-|+..+...|.
T Consensus 683 yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 683 YKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHh-CccchHHHHHHHHHhccccc
Confidence 9998765 56688888888888877764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-13 Score=130.66 Aligned_cols=428 Identities=17% Similarity=0.221 Sum_probs=287.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCChh-HHHHHHHHHHHCCCCCccchHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGR--EGDFK-RMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~-~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
+++-|.|+.+ ...|.+.++.-+|++|...|.+.+...-..|...-+- ..+.- .-++.|-.|...| ..+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3445555554 4578899999999999999888777666665544332 22222 2345566666655 3334444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLI 415 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 415 (757)
+.|.+.+ -+|+. .+....++..+|.++|+--..+.|.+++++.. ....+.+..++|.+|
T Consensus 191 -----K~G~vAd--L~~E~-----------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~---~~k~kv~~~aFN~lI 249 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFET-----------LPKTDETVSIMIAGLCKFSSLERARELYKEHR---AAKGKVYREAFNGLI 249 (625)
T ss_pred -----ccccHHH--HHHhh-----------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHH---HhhheeeHHhhhhhh
Confidence 3454433 23332 35667788889999998888888888888876 555577888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048807 416 NGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINS----AVEFFQEVTRKGLCANAVTYTILITAFCNV 491 (757)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 491 (757)
.+-.-. ...+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.
T Consensus 250 ~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 250 GASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 764432 226788888888888999999999998888888765 456777888888888888888888888887
Q ss_pred CCHHH-HHHHHHHHHHc----C----CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCC---HHHHHHHH
Q 048807 492 NNFQE-AIKWFDDMSRA----G----CSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAG----FRPD---IVCYNHLI 555 (757)
Q Consensus 492 g~~~~-A~~~~~~m~~~----~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g----~~~~---~~~~~~li 555 (757)
++..+ |..++.++... . .+.|..-|...++.|.+..+.+-|.++..-+.... +.|+ ..-|..+.
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence 77644 45555554331 1 22345566777778888888888877765544321 2222 23466777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C-
Q 048807 556 SGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNG-H- 633 (757)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~- 633 (757)
...|+....+.-...|+.|+-.-+-|+..+...++.+..-.|+++-.-+++.++...|...+.....-++..+++.. +
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp 485 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHP 485 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCC
Confidence 78888888888888888888766677888888888888888888888888888887765444444444444444433 1
Q ss_pred -------HHH-----HHHHHH-------HhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHH
Q 048807 634 -------VDE-----AMKIFK-------ELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEV-RPNTNTYN 693 (757)
Q Consensus 634 -------~~~-----A~~~~~-------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~ 693 (757)
+.. |..+++ ++.+ .. -.....+..+-.+.+.|+.++|.++|.-...++- -|-....+
T Consensus 486 ~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~-~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~ln 562 (625)
T KOG4422|consen 486 LTPEREQLQVAFAKCAADIKEAYESQPIRQRA-QD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLN 562 (625)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-cc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchh
Confidence 111 111111 2222 22 2344567777888999999999999999865432 23333344
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048807 694 ---AMFKGLRQKNMLDKAFKLMDRMIEHA 719 (757)
Q Consensus 694 ---~l~~~~~~~g~~~~A~~~~~~~~~~g 719 (757)
-+++.-.+.+....|...++-|....
T Consensus 563 Am~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 563 AMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 56666678888999999999887653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-12 Score=127.74 Aligned_cols=454 Identities=11% Similarity=0.072 Sum_probs=346.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+...|.....-=..++++..|..+|++++.-+.. +...|...+.+=.++.....|..+++..+..- +.-...|.-.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 4445555555556678889999999999987644 78899999999999999999999999998752 222344666666
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING 417 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (757)
+--..|++..|.++|++-.+ ..|+..+|++.|+.-.+-..++.|..++++.. -+.|++.+|-.....
T Consensus 150 mEE~LgNi~gaRqiferW~~--------w~P~eqaW~sfI~fElRykeieraR~IYerfV-----~~HP~v~~wikyarF 216 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--------WEPDEQAWLSFIKFELRYKEIERARSIYERFV-----LVHPKVSNWIKYARF 216 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----eecccHHHHHHHHHH
Confidence 66778999999999999987 68999999999999999999999999999974 246999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 048807 418 FCKSGNIEKGLELFHLMKQE-G-VTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCAN-AVTYTILITAFCNVNNF 494 (757)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~-g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 494 (757)
-.+.|.+..|..+|+...+. | -.-+...+.+....-.++..++.|.-+|..+++.-+... ...|..+...--+-|+.
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~ 296 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDK 296 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcch
Confidence 99999999999999988864 1 111234455666666678889999999999988633321 34555555444455654
Q ss_pred H---HHHH-----HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHH--------
Q 048807 495 Q---EAIK-----WFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDI--VCYNHLIS-------- 556 (757)
Q Consensus 495 ~---~A~~-----~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~-------- 556 (757)
. +++- -|+++++.+ +.|-.+|-..++.-...|+.+...++|+..... ++|-. ..|...|-
T Consensus 297 ~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 297 EGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred hhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHH
Confidence 3 3332 245555554 678888998999888999999999999999876 34421 12222221
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048807 557 GFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFL----SKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNG 632 (757)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 632 (757)
.-....+.+.+.++|+..++. +|....|+.-+--.| .+..++..|.+++...+. ..|-..+|...|..-.+.+
T Consensus 375 eEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHh
Confidence 123578899999999999985 355566666554444 467899999999998885 4688899999999999999
Q ss_pred CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048807 633 HVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKE-VRPNTNTYNAMFKGLRQKNMLDKAFKL 711 (757)
Q Consensus 633 ~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 711 (757)
+++...+++++..+ .+ +.|..+|......-...|+.+.|..+|+-+++.. +......|.+.|+.-...|.++.|..+
T Consensus 452 efDRcRkLYEkfle-~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLE-FS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred hHHHHHHHHHHHHh-cC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 99999999999998 33 3467789888888888999999999999998732 222345778888888899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHH
Q 048807 712 MDRMIEHACHPDYISMEILTEWLS 735 (757)
Q Consensus 712 ~~~~~~~g~~p~~~~~~~l~~~~~ 735 (757)
|+++++. .+...+|.+....-.
T Consensus 530 YerlL~r--t~h~kvWisFA~fe~ 551 (677)
T KOG1915|consen 530 YERLLDR--TQHVKVWISFAKFEA 551 (677)
T ss_pred HHHHHHh--cccchHHHhHHHHhc
Confidence 9999975 444456666655433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-12 Score=125.55 Aligned_cols=242 Identities=15% Similarity=0.259 Sum_probs=127.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
+-+..++..+|.+.||--..+.|.+++++........+..++|.+|.+-.-. ...++..+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 4455566666666666666666666666666655556666666666553322 225666666666666666666666
Q ss_pred HHHHHhcCChhHH----HHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHH-HHHHHHHHHHhh-cC----CCC
Q 048807 336 INRLCKLYRADEA----LEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEE-ALGLIEQMRLRL-QK----GCM 405 (757)
Q Consensus 336 i~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~-~~----~~~ 405 (757)
+.+..+.|+++.| .+++.+|.+.| +.|...+|..+|..+++.++..+ |..++.++.... .+ ..+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiG------VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIG------VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhC------CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 6666666665543 34445555555 66666666666666666555432 333333332110 11 112
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 048807 406 PNAVTYNCLINGFCKSGNIEKGLELFHLMKQEG----VTPN---VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANA 478 (757)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 478 (757)
.|..-|..-+..|....+.+-|.++...+.... +.|+ ..-|..+....|+....+.-..+|+.|+-.-.-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 234445555555555556555555554443211 1111 122344444555555555555555555544444444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048807 479 VTYTILITAFCNVNNFQEAIKWFDDMSRA 507 (757)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (757)
.+...++++..-.|.++-.-+++.++...
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 44444555544455555555555544443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-13 Score=132.39 Aligned_cols=215 Identities=16% Similarity=0.218 Sum_probs=119.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048807 525 QAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARR 604 (757)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 604 (757)
-.|+.-.|..-|+..++....++ ..|-.+..+|....+.++....|++....+ +.|..+|..-.+.+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 34556666666666665533322 225555556666666666666666666655 4455556555666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048807 605 VLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKE 684 (757)
Q Consensus 605 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 684 (757)
-|++.+... +-+...|..+..+..+.+++++++..|++..+ ..+..+..|+.....+..++++++|.+.|+..++.
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 666666542 11344555555555566666666666666665 33334445666666666666666666666666542
Q ss_pred CCCC-------HHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 685 VRPN-------TNTY--NAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 685 ~~p~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
.|. ...+ ..++. +.-.+++..|.+++.++++ ++|.. ..|..|.....+.|+.++|.++|++
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred -ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 222 1111 11111 1123566666666666664 34443 4555666666666666666666654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-14 Score=147.47 Aligned_cols=289 Identities=13% Similarity=0.037 Sum_probs=227.6
Q ss_pred ChhHHHHHHHHhhccCCCc-chHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChH
Q 048807 163 MYDYSLLVYNELDNNLRNT-HVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDE 241 (757)
Q Consensus 163 ~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (757)
+..+|...|.++..-..|+ .+..-++.+|...+.+++|++.|+.+.+.++-..-+...|.++++-+-..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---------- 403 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---------- 403 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----------
Confidence 4678888888865544454 45677999999999999999999999887655444444566666655432
Q ss_pred HHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 048807 242 ELVGLVSK-FAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEM 320 (757)
Q Consensus 242 ~~~~~~~~-~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 320 (757)
-++..+.+ +++. -+..+.+|.++.++|.-+++.+.|++.|+++++.++. ...+|+.+..-+....+++.|...|+..
T Consensus 404 v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 404 VALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 22333332 3333 3667889999999999999999999999999988754 7889999999999999999999999998
Q ss_pred HHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 048807 321 KENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRL 400 (757)
Q Consensus 321 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 400 (757)
+..+ +.+-.+|..+...|.+.++++.|.-.|+++++.+ |.+.+....+...+.+.|+.|+|++++++..
T Consensus 482 l~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~--- 550 (638)
T KOG1126|consen 482 LGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-------PSNSVILCHIGRIQHQLKRKDKALQLYEKAI--- 550 (638)
T ss_pred hcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---
Confidence 8764 3456678888889999999999999999998876 6778888888889999999999999999884
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 048807 401 QKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCA 476 (757)
Q Consensus 401 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 476 (757)
.-.+.|+..-...+..+...+++++|++.++++++. ++-+..++..+...|.+.|+.+.|+.-|.-+.+..++.
T Consensus 551 -~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 551 -HLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred -hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 233556777777788888889999999999999886 33356778888889999999999998888888765443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-09 Score=109.44 Aligned_cols=563 Identities=12% Similarity=0.115 Sum_probs=309.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhccCC---CcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHH
Q 048807 149 NSATLLIRFFGKVSMYDYSLLVYNELDNNLR---NTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVF 225 (757)
Q Consensus 149 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~ 225 (757)
..+-.-+....++|++..-+..|+++...-| ...+|.-.+...-..|.++-++.+|++-+.- .|.. ....+
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~--~eeyi 176 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEA--REEYI 176 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHH--HHHHH
Confidence 4566666777778888888888877654322 1245777777777777787888888877663 3333 12222
Q ss_pred HHHHhhhhhccccChHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHhCCCCCCHHH
Q 048807 226 YALMRREHVKNSVTDEELVGLVSKFAEH------GVFPNAVWLTQLITRFCRKGKTDE---AWDVLHVLMKFDAPLEAAS 296 (757)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~ 296 (757)
.-++.. ...+++.+.+..++.. .-+.+--.|.-+-+...+.-+.-. ...+++.+..+-...-...
T Consensus 177 e~L~~~------d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~L 250 (835)
T KOG2047|consen 177 EYLAKS------DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFL 250 (835)
T ss_pred HHHHhc------cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHH
Confidence 222222 1113333333322211 113444455555555555444332 2334444444322222467
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHH
Q 048807 297 CNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTL 376 (757)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (757)
|++|.+.|.+.|.+++|..+|++.+.. ...+.-|+.+.+.|+.-....-+..+ +...+.+ . -+.+...+...
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~--~---n~ed~~dl~~~ 322 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEES--G---NEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcc--c---ChhhhhhHHHH
Confidence 889999999999999999999888775 34566677777777653322212111 1000011 0 11122222111
Q ss_pred HHHHHH--cCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------HHHHHH
Q 048807 377 IDGLCK--VGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN------VVTLNT 448 (757)
Q Consensus 377 i~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ 448 (757)
+..+.. .++. -++.... ....+.++..|..-... ..|+..+-...+.++.+. +.|. ...|..
T Consensus 323 ~a~~e~lm~rr~----~~lNsVl---LRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~ 392 (835)
T KOG2047|consen 323 MARFESLMNRRP----LLLNSVL---LRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVE 392 (835)
T ss_pred HHHHHHHHhccc----hHHHHHH---HhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHH
Confidence 111110 0000 0111111 22335566666655443 346666777777777654 2232 234667
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------------
Q 048807 449 LVDGMCRHGRINSAVEFFQEVTRKGLCAN---AVTYTILITAFCNVNNFQEAIKWFDDMSRAGCS--------------- 510 (757)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------------- 510 (757)
+.+.|-..|+++.|..+|++..+-..+-- ..+|..-..+-.+..+++.|+++.++.....-.
T Consensus 393 faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 77777778888888888877776543321 335555555556666777777777665432111
Q ss_pred --CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHH
Q 048807 511 --ADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNS-VTYN 587 (757)
Q Consensus 511 --~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~ 587 (757)
.+...|...++..-..|-++....+|+.+.+..+. ++...-.....+-...-++++.++|++-+..--.|+. ..|+
T Consensus 473 lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 473 LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 12234555566666677777778888887776554 3322222333344555677777777765554334444 3566
Q ss_pred HHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHhhhcCCCCCCH--HHHHHH
Q 048807 588 TLISFLSK---SGNFSAARRVLKKMVKEGLVPTVVTYGALIH--AFCVNGHVDEAMKIFKELSSSSNVSPNT--VIYNIL 660 (757)
Q Consensus 588 ~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l 660 (757)
..+.-+.+ ...++.|..+|+++++ |++|...-+.-|+. .-.+.|....|+.++++... ++++.. ..||..
T Consensus 552 tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~ 628 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIY 628 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Confidence 65554443 2367888888888887 56665433222222 22345777888888888665 444432 356766
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHH
Q 048807 661 IDSLCKNNQVELALSLMEEMKVKEVRPNTNTYN---AMFKGLRQKNMLDKAFKLMDRMIEHACHP--DYISMEILTEWLS 735 (757)
Q Consensus 661 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~ 735 (757)
|.--...=-+.....+|++.++. -||...-. -..+.=++.|..+.|..+|...-+. ++| +...|.+.-..=.
T Consensus 629 I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEv 705 (835)
T KOG2047|consen 629 IKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEV 705 (835)
T ss_pred HHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHH
Confidence 65544443445556677777763 45544332 2333446678888888887776554 445 3466777777777
Q ss_pred hcCCHHHHHHHHh
Q 048807 736 EAGQTEKLKKFVQ 748 (757)
Q Consensus 736 ~~g~~~~A~~~~~ 748 (757)
++|+-+-.+++++
T Consensus 706 rHGnedT~keMLR 718 (835)
T KOG2047|consen 706 RHGNEDTYKEMLR 718 (835)
T ss_pred hcCCHHHHHHHHH
Confidence 7787555555543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-11 Score=121.95 Aligned_cols=386 Identities=13% Similarity=0.068 Sum_probs=269.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchH-
Q 048807 254 GVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTF- 332 (757)
Q Consensus 254 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~- 332 (757)
+...|.+.+-.....+.+.|....|+..|...+..-|- .-.+|..|..... +.+.+ ..... |.+.|..-.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~-~W~AWleL~~lit---~~e~~----~~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPW-FWSAWLELSELIT---DIEIL----SILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCc-chHHHHHHHHhhc---hHHHH----HHHHh-cCcccchHHH
Confidence 44667888888888888999999999999998875432 4455555544332 22222 22222 222221111
Q ss_pred -HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHH
Q 048807 333 -GTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTY 411 (757)
Q Consensus 333 -~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 411 (757)
--+..++-...+.+++++-.+.....| ++.....-+....+.....++++|+.+|+++... ..-.-.|..+|
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~g------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYRl~dmdly 302 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVG------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYRLDDMDLY 302 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcchhHHHH
Confidence 123345666668888888888888877 6666666666667777888999999999998521 11112367777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048807 412 NCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNV 491 (757)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 491 (757)
..++-+ ++.+-+-+ .+.+-.-.=-+--+.|+..+.+-|.-.++.++|..+|++.++.+.. ...+|+.+..-|...
T Consensus 303 SN~LYv--~~~~skLs--~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEm 377 (559)
T KOG1155|consen 303 SNVLYV--KNDKSKLS--YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEM 377 (559)
T ss_pred hHHHHH--HhhhHHHH--HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHh
Confidence 777643 33322221 2211111101123457888888888899999999999999998654 667899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 492 NNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVL 571 (757)
Q Consensus 492 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 571 (757)
.+...|++-|+..++.+ |.|-..|..|..+|.-.+.+.-|+-.|++..+.. +.|...|.+|..+|.+.+++++|++.|
T Consensus 378 KNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred cccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999998875 7788899999999999999999999999988864 337889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048807 572 QEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE----GLVPT--VVTYGALIHAFCVNGHVDEAMKIFKELS 645 (757)
Q Consensus 572 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 645 (757)
......| ..+...+..|...|-+.++.++|...|++.++. |...+ .....-|..-+.+.+++++|........
T Consensus 456 krai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 456 KRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 9998877 446688899999999999999999998887752 32222 2222234455667777777766555444
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 646 SSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 646 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
. + ....++|..+++++..
T Consensus 535 ~--~-----------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 535 K--G-----------------ETECEEAKALLREIRK 552 (559)
T ss_pred c--C-----------------CchHHHHHHHHHHHHH
Confidence 3 1 1234667777777664
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.1e-11 Score=116.90 Aligned_cols=364 Identities=10% Similarity=0.017 Sum_probs=246.5
Q ss_pred CCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC
Q 048807 326 EPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCM 405 (757)
Q Consensus 326 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 405 (757)
..|...+......+-+.|....|+..|...+..- |-.-.+|..|... ..+.+.+..+... .+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-------P~~W~AWleL~~l---it~~e~~~~l~~~--------l~ 222 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-------PWFWSAWLELSEL---ITDIEILSILVVG--------LP 222 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-------CcchHHHHHHHHh---hchHHHHHHHHhc--------Cc
Confidence 4455544444555667888888888888876542 4444444444433 2333333322221 12
Q ss_pred CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHH
Q 048807 406 PN--AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLC--ANAVTY 481 (757)
Q Consensus 406 ~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~ 481 (757)
.| ...=-.+..++......+++++-.......|++-+...-+....+.....++++|+.+|+++.+..+- .|..+|
T Consensus 223 ~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdly 302 (559)
T KOG1155|consen 223 SDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLY 302 (559)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 22 11122344566666678888888888888887766666666666677788899999999999887431 255666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048807 482 TILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKK 561 (757)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 561 (757)
+.++- .+..+-. +..+-+-...-.+--+.|+..+.+-|+-.++.++|...|++.++.+.. ....|+.+.+-|...
T Consensus 303 SN~LY--v~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEm 377 (559)
T KOG1155|consen 303 SNVLY--VKNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEM 377 (559)
T ss_pred hHHHH--HHhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHh
Confidence 66553 3322211 112211111101223456677778888889999999999998887533 567888889999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 562 KMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIF 641 (757)
Q Consensus 562 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 641 (757)
.+...|.+.++.+++.. |.|-..|-.|.++|.-.+...-|+-.|++..... +-|...|.+|..+|.+.++.++|++.|
T Consensus 378 KNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred cccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999886 7788899999999999999999999999988853 337888999999999999999999999
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 642 KELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKV----KEVRPNT--NTYNAMFKGLRQKNMLDKAFKLMDRM 715 (757)
Q Consensus 642 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (757)
.+... .+ ..+...+..|.+.|-+.++.++|...|++-++ .|...+. ..-.-|..-+.+.+++++|..+....
T Consensus 456 krai~-~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 456 KRAIL-LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHh-cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 98887 33 23557788899999999999999988888765 2322221 11222444556777777777766555
Q ss_pred H
Q 048807 716 I 716 (757)
Q Consensus 716 ~ 716 (757)
.
T Consensus 534 ~ 534 (559)
T KOG1155|consen 534 L 534 (559)
T ss_pred h
Confidence 4
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-12 Score=137.47 Aligned_cols=293 Identities=13% Similarity=0.075 Sum_probs=160.0
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048807 420 KSGNIEKGLELFHLMKQEGVTPN-VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAI 498 (757)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 498 (757)
..|+++.|.+.+.+..+.. |+ ...+-.......+.|+++.|.+++.++.+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3566666666665555432 22 22333344555555666666666666554432222223333355555666666666
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHH
Q 048807 499 KWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLIS---GFCKKKMLDKAYEVLQEME 575 (757)
Q Consensus 499 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~~~ 575 (757)
..++.+.+.. |.+..++..+...+.+.|++++|.+++..+.+.+..+.......-.. .....+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666666553 44455555666666666666666666666665543322111111111 1122222222333444444
Q ss_pred hCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 048807 576 DIGM---TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVT---YGALIHAFCVNGHVDEAMKIFKELSSSSN 649 (757)
Q Consensus 576 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 649 (757)
+... +.+...+..++..+...|+.++|.+++++.++.. ||... ...........++.+.+.+.+++..+...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 3311 1366677777777888888888888888877753 33321 11111122334666777777777666222
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 650 VSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 650 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
-.|+.....+++..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22221456677777777888888888777433322467777777777777788888888777777643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-12 Score=134.31 Aligned_cols=286 Identities=10% Similarity=0.064 Sum_probs=178.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 421 SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKW 500 (757)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 500 (757)
.|++++|.+.+....+..-.| ...|........+.|+++.|.+++.++.+....+...........+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 466666665555544431111 1222222334456666666666666665542221111212234556666666666666
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 501 FDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDI-------VCYNHLISGFCKKKMLDKAYEVLQE 573 (757)
Q Consensus 501 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 573 (757)
++++.+.. |.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 66666554 445556666666666666666666666666665433221 1222333333334445555666665
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 048807 574 MEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN 653 (757)
Q Consensus 574 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 653 (757)
+.+. .+.+......+...+...|+.++|.+++++..+. +|+... .++.+....++.+++.+..+...+ ..+.|
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk--~~P~~ 327 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK--QHGDT 327 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHh--hCCCC
Confidence 5443 2456777778888888888888888888888874 344422 123344455888888888888877 33445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 654 TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 654 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
...+.++...|.+.|++++|.+.|+.+.+. .|+..++..+..++.+.|+.++|.+++++.+.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666778888888888888888888888874 68888888888888888888888888888764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-12 Score=125.05 Aligned_cols=405 Identities=15% Similarity=0.138 Sum_probs=249.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCc-cchHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE-AASCNALLNALGREGDFKRMNQLFTEMKENDIEPS-VVTFGTIINR 338 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~ 338 (757)
.+....+-|.++|++++|++.+..++... |+ ++-|.....+|...|++++..+-..+.++. .|+ +..+..-..+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 34456778889999999999999999864 45 778888889999999999999988888876 354 3445555666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH-----Hhh---cCCCCCCHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR-----LRL---QKGCMPNAVT 410 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~---~~~~~~~~~~ 410 (757)
+-..|++++|+.-..-. .+..++....-.--+.+++.+.. ... .....|....
T Consensus 193 ~E~lg~~~eal~D~tv~-------------------ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~f 253 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVL-------------------CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATF 253 (606)
T ss_pred HHhhccHHHHHHhhhHH-------------------HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHH
Confidence 67777777765432221 12222211111112222222110 000 1122333332
Q ss_pred HHHHHHHHHHc---------C----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC---C
Q 048807 411 YNCLINGFCKS---------G----NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKG---L 474 (757)
Q Consensus 411 ~~~li~~~~~~---------g----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~ 474 (757)
..+....+... . ...++.+.+..-.+ ..+..|.+.+.+-.... .
T Consensus 254 i~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~--------------------e~Y~~a~~~~te~~~~~~~~~ 313 (606)
T KOG0547|consen 254 IASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLE--------------------EGYLKAYDKATEECLGSESSL 313 (606)
T ss_pred HHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCc--------------------hhHHHHHHHHHHHhhhhhhhc
Confidence 22222222110 0 01111111111111 12222322222211110 0
Q ss_pred CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 048807 475 CAN---------AVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFR 545 (757)
Q Consensus 475 ~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 545 (757)
..+ ..+...-...+.-.|+...|..-|+..+..... +...|--+..+|....+.++....|......+..
T Consensus 314 ~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~ 392 (606)
T KOG0547|consen 314 SVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE 392 (606)
T ss_pred cccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC
Confidence 001 112222223345577888888888888876422 2233777777888888888888888888876533
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 546 PDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALI 625 (757)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 625 (757)
+..+|..-..++.-.+++++|..=|++.+... +.+...|-.+.-+..+.++++++...|++..++ ++.-+..|+...
T Consensus 393 -n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fA 469 (606)
T KOG0547|consen 393 -NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFA 469 (606)
T ss_pred -CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHH
Confidence 56677777777777888888888888888775 456667777777777888888899999888876 455677888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 626 HAFCVNGHVDEAMKIFKELSSSSNVSPN---------TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMF 696 (757)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 696 (757)
..+..++++++|.+.|+..++ +.|+ +.+--.++-.-. .+++.+|.+++++..+.. +.....|.+|.
T Consensus 470 eiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D-pkce~A~~tla 544 (606)
T KOG0547|consen 470 EILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD-PKCEQAYETLA 544 (606)
T ss_pred HHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC-chHHHHHHHHH
Confidence 888888899999988888776 2232 112222222222 378889999999888742 22445788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 048807 697 KGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~ 717 (757)
..-.+.|+.++|+++|++...
T Consensus 545 q~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 545 QFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 888899999999999998864
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-12 Score=134.27 Aligned_cols=288 Identities=12% Similarity=0.025 Sum_probs=215.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHH
Q 048807 454 CRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDAS 533 (757)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 533 (757)
...|+++.|.+.+.+..+.... ....+-.....+.+.|+.+.|.+.+.+..+....+...........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4589999999999988776432 233444556778899999999999999887632222234444688889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHH
Q 048807 534 LVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNT----LISFLSKSGNFSAARRVLKKM 609 (757)
Q Consensus 534 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m 609 (757)
..++.+.+..+. +...+..+...|.+.|++++|.+.+..+.+.+.. +...+.. ....+...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999998533 6778889999999999999999999999988743 3333321 111223333334444566665
Q ss_pred HhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 610 VKEGL---VPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVI---YNILIDSLCKNNQVELALSLMEEMKVK 683 (757)
Q Consensus 610 ~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 683 (757)
.+... +.+...+..++..+...|+.++|.+.+++..+. .||... ...........++.+.+.+.+++..+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 55421 137888899999999999999999999999882 233321 122222334457889999999998875
Q ss_pred CCCC-CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 684 EVRP-NT--NTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 684 g~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
.| |+ ....++++.+.+.|++++|.++|++.......||...+..+...+.+.|+.++|.+++++
T Consensus 329 --~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 329 --VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred --CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34 44 566799999999999999999999543334689998899999999999999999999987
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.4e-12 Score=132.01 Aligned_cols=283 Identities=12% Similarity=0.088 Sum_probs=220.9
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCh
Q 048807 383 VGKQEEALGLIEQMRLRLQKGCMPN-AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTL--NTLVDGMCRHGRI 459 (757)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~ 459 (757)
.|++++|++.+.... .. .++ ...|........+.|+++.|.+.+.++.+. .|+...+ ......+...|++
T Consensus 97 eGd~~~A~k~l~~~~---~~--~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 97 EGDYQQVEKLMTRNA---DH--AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred CCCHHHHHHHHHHHH---hc--ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCH
Confidence 799999998888764 21 122 333444455568999999999999999875 4454322 3447788999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------hhHHHHHHHHHhcCChhHH
Q 048807 460 NSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADS-------VVYFTLISGLCQAGRMNDA 532 (757)
Q Consensus 460 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A 532 (757)
++|...++++.+..+. +..+...+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+..
T Consensus 170 ~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 170 HAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999998654 7888899999999999999999999999987644322 1233334444444555666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 533 SLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE 612 (757)
Q Consensus 533 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (757)
.++++.+.+. .+.++.....+...+...|+.++|.+++++..+. ++|.... ++.+....++.+++.+..++..+.
T Consensus 249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh
Confidence 6666666443 2457888899999999999999999999999885 5665322 233444569999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 613 GLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 613 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
. +-|...+..+...+.+.|++++|.+.|+...+ ..|+...+..+...+.+.|+.++|..++++...
T Consensus 324 ~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 H-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 34677788999999999999999999999987 469999999999999999999999999998864
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.9e-15 Score=148.15 Aligned_cols=262 Identities=16% Similarity=0.219 Sum_probs=88.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhc
Q 048807 264 QLITRFCRKGKTDEAWDVLHVLMKFD-APLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKL 342 (757)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 342 (757)
.+...+.+.|++++|++++....... ++.|...|..+.......|+++.|.+.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45677777888888888885544433 33456666666667777778888888888877765 2245556566555 577
Q ss_pred CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC
Q 048807 343 YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSG 422 (757)
Q Consensus 343 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (757)
+++++|.+++++..+. .++...+..++..+.+.++++++.++++.+.. ....+.+...|..+...+.+.|
T Consensus 91 ~~~~~A~~~~~~~~~~--------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEE--LPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH---T---T-HHHHHHHHHHHHHCC
T ss_pred cccccccccccccccc--------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHcC
Confidence 7777777777766543 24555566677777777777777777777641 2223456667777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048807 423 NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFD 502 (757)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (757)
+.++|++.+++.++.... |......++..+...|+.+++.+++....+.. +.|+..+..+..+|...|+.++|+.+|+
T Consensus 161 ~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccc
Confidence 777777777777775322 45666677777777777777666666665543 2344556667777777777777777777
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048807 503 DMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLK 540 (757)
Q Consensus 503 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 540 (757)
+..+.. +.|......+..++.+.|+.++|..+.++..
T Consensus 239 ~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 239 KALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred cccccc-ccccccccccccccccccccccccccccccc
Confidence 766643 4466666667777777777777776665543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.4e-12 Score=117.37 Aligned_cols=291 Identities=15% Similarity=0.146 Sum_probs=182.3
Q ss_pred CChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHH
Q 048807 308 GDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQE 387 (757)
Q Consensus 308 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 387 (757)
.+.++|.++|-+|.+.+ +-+..+..+|.+.|-+.|..|.|++++..+.++. +.....-..+...|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHHHHHHhhhhh
Confidence 56677777777777653 2344555667777777777777777777776532 1111122344556777788888888
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChHHHH
Q 048807 388 EALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNV----VTLNTLVDGMCRHGRINSAV 463 (757)
Q Consensus 388 ~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~ 463 (757)
.|+++|..+. .++ .--......|+..|-+..++++|++.-+++.+.+..+.. ..|.-+...+....+++.|.
T Consensus 125 RAE~~f~~L~---de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 125 RAEDIFNQLV---DEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred HHHHHHHHHh---cch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 8888888774 212 223456677888888888888888888888877544432 23555666666667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 048807 464 EFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAG 543 (757)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 543 (757)
.++.+..+.+.. .+.+--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+..
T Consensus 201 ~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 777777776433 3334445566777777777777777777776544344556667777777777777777777766653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 048807 544 FRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK---SGNFSAARRVLKKMVK 611 (757)
Q Consensus 544 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 611 (757)
+....-..+........-.+.|...+.+-+.. .|+...+..+++.... .|...+-...+++|+.
T Consensus 280 --~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 280 --TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred --CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333344444444444455565555555544 5677777777765432 2334555555555554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.7e-09 Score=106.68 Aligned_cols=541 Identities=12% Similarity=0.133 Sum_probs=291.1
Q ss_pred ChHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhhHHHHHH
Q 048807 128 SPESLFDLYKACKDQNIPL--SINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLD 205 (757)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 205 (757)
....-...|+++... +|. -..+|...++-....|..+-+..++++-....| ...+--|.-+++.+++++|-+.+.
T Consensus 117 ~iT~tR~tfdrALra-LpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P--~~~eeyie~L~~~d~~~eaa~~la 193 (835)
T KOG2047|consen 117 LITRTRRTFDRALRA-LPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP--EAREEYIEYLAKSDRLDEAAQRLA 193 (835)
T ss_pred hHHHHHHHHHHHHHh-CchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH--HHHHHHHHHHHhccchHHHHHHHH
Confidence 334444445554332 122 224566666666666667777777766554322 235555677777777777777777
Q ss_pred HHHhccCCCC---C-CcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCC--CCC--HHHHHHHHHHHHHcCChhH
Q 048807 206 EMLDRESQFP---V-NELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGV--FPN--AVWLTQLITRFCRKGKTDE 277 (757)
Q Consensus 206 ~m~~~~~~~~---p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~--~~~~~~li~~~~~~g~~~~ 277 (757)
..+..+..+. + +...+..+..-+......+...+ + +.++..|+ .+| ...|++|.+-|.+.|.+++
T Consensus 194 ~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln---v----daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 194 TVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN---V----DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC---H----HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 6654332111 1 11122222222222211111111 1 12233333 233 5689999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH--HCCCCCccchHHHHHHHHHhcCChhHHHHHHHHH
Q 048807 278 AWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMK--ENDIEPSVVTFGTIINRLCKLYRADEALEVFEKM 355 (757)
Q Consensus 278 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 355 (757)
|..+|++.+.. ...+.-++.+-++|++-.+-.-+..+= +. +.+-.-+...+ +-....|+.+
T Consensus 267 arDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~ed~~dl-------------~~~~a~~e~l 329 (835)
T KOG2047|consen 267 ARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEEDDVDL-------------ELHMARFESL 329 (835)
T ss_pred HHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChhhhhhH-------------HHHHHHHHHH
Confidence 99999998874 234556677777776532222221111 11 11111111221 1222222222
Q ss_pred HhCCCCCc-----ccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 048807 356 IAGKETAE-----ISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP--NAVTYNCLINGFCKSGNIEKGL 428 (757)
Q Consensus 356 ~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~ 428 (757)
+....... ..-+.++..|..-+..+ .|+..+-...+.+..........+ -...|..+.+.|-..|+++.|.
T Consensus 330 m~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 330 MNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred HhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 22110000 00134455555544433 455555556665553211111111 1235666777777777777777
Q ss_pred HHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----------------CCHHHHHHHHHHH
Q 048807 429 ELFHLMKQEGVTPN---VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLC-----------------ANAVTYTILITAF 488 (757)
Q Consensus 429 ~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~li~~~ 488 (757)
.+|++..+...+-- ..+|..-...=.+..+++.|+++.+.+....-. .+..+|..+++.-
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 77777766533211 234444555555566667777766655432111 1334566666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh---cCCH
Q 048807 489 CNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIV-CYNHLISGFCK---KKML 564 (757)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~---~g~~ 564 (757)
-..|-++....+|+++++..+. ++.........+-.+.-++++.++|++-...-..|++. .|+..+.-+.+ ..++
T Consensus 488 Es~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 6778888888899988876432 22222223333445666788888887765553345543 56665554443 3468
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 048807 565 DKAYEVLQEMEDIGMTPNSVTYNTLI--SFLSKSGNFSAARRVLKKMVKEGLVPT--VVTYGALIHAFCVNGHVDEAMKI 640 (757)
Q Consensus 565 ~~A~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~ 640 (757)
+.|..+|++.++ |++|...-+--|+ ..--+.|....|+.++++.... +++. ...|+..|.--...=-+.....+
T Consensus 567 EraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~i 644 (835)
T KOG2047|consen 567 ERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREI 644 (835)
T ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence 899999999998 6676554332222 2223568888899999987654 3332 24566555443333334445666
Q ss_pred HHHhhhcCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCC
Q 048807 641 FKELSSSSNVSPNTVI---YNILIDSLCKNNQVELALSLMEEMKVKEVRP--NTNTYNAMFKGLRQKNM 704 (757)
Q Consensus 641 ~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~ 704 (757)
|++.++. -||... ..-..+.-++.|.++.|..++.--.+. +.| +...|.+.-..=.++|+
T Consensus 645 YekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 645 YEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 7777662 244432 233445567789999999988776653 234 56677777777788888
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-12 Score=133.67 Aligned_cols=282 Identities=14% Similarity=0.095 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChhHHHHHH-
Q 048807 241 EELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAP--LEAASCNALLNALGREGDFKRMNQLF- 317 (757)
Q Consensus 241 ~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~- 317 (757)
.+|..+|..+- .-+.....+...+..+|...+++++|+.+|+.+.+..+. .+...|.+.+..+-+. -++..+
T Consensus 336 ~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~La 410 (638)
T KOG1126|consen 336 REALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLA 410 (638)
T ss_pred HHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHH
Confidence 34444554422 223334455555555666666666666666555554322 2344555544443321 111111
Q ss_pred HHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 318 TEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 318 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
+.+...+ +-.+.+|.++.++|.-+++.+.|++.|++++..+ +....+|+.+..-+.....+|.|...|+...
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-------p~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-------PRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-------CccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 1222221 2234555555555555555555555555555533 2245555555555555555555555555542
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 048807 398 LRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCAN 477 (757)
Q Consensus 398 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 477 (757)
.-.+.+-.+|..+.-.|.+.++++.|+-.|+++.+.+.. +.+....+...+.+.|+.++|+++++++...... |
T Consensus 483 ----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n 556 (638)
T KOG1126|consen 483 ----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-N 556 (638)
T ss_pred ----cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-C
Confidence 111222333444445555555555555555555554322 3444444445555555555555555555544333 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048807 478 AVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEA 542 (757)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 542 (757)
+..---.+..+...+++++|+..++++.+. ++.+...+..+...|.+.|+.+.|+.-|.-+...
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 322222334444445555555555554443 2333344444444555555555555444444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.4e-11 Score=119.81 Aligned_cols=470 Identities=14% Similarity=0.061 Sum_probs=307.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH----
Q 048807 243 LVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFT---- 318 (757)
Q Consensus 243 ~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~---- 318 (757)
|.-+-+++...+..|+. ---++.+|.-.|+++.|..+...-.-. ..|..+.......+.+..++++|..++.
T Consensus 35 a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~ 110 (611)
T KOG1173|consen 35 ALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHV 110 (611)
T ss_pred HHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 33344445444434433 334778888889999888777654221 2467777778888899999999998887
Q ss_pred HHHHCC---------CCCccch----HHH-------HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHH
Q 048807 319 EMKEND---------IEPSVVT----FGT-------IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLID 378 (757)
Q Consensus 319 ~m~~~g---------~~p~~~~----~~~-------li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 378 (757)
.+.... +.+|..- -+. -...|......++|...|.+.+.. |+..+..+..
T Consensus 111 ~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----------D~~c~Ea~~~ 180 (611)
T KOG1173|consen 111 ETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----------DAKCFEAFEK 180 (611)
T ss_pred hhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----------chhhHHHHHH
Confidence 221100 0111110 000 112334455667777777777543 3333333322
Q ss_pred HHHHc-CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 379 GLCKV-GKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHG 457 (757)
Q Consensus 379 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 457 (757)
.-... =...+-.++|+...- ......++.....+.....-...-++....-.+..-.+..-+........+-+...+
T Consensus 181 lvs~~mlt~~Ee~~ll~~l~~--a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c 258 (611)
T KOG1173|consen 181 LVSAHMLTAQEEFELLESLDL--AMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGC 258 (611)
T ss_pred HHHHHhcchhHHHHHHhcccH--HhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcC
Confidence 21111 111222333332110 000111222222222111000000000000010111123446667777788888999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 048807 458 RINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVS 537 (757)
Q Consensus 458 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 537 (757)
++.+..++.+.+.+.. +++...+..-|.++...|+..+-..+=.++.+. .|....+|-++.--|...|+..+|.+.|.
T Consensus 259 ~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~S 336 (611)
T KOG1173|consen 259 RFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFS 336 (611)
T ss_pred hHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHH
Confidence 9999999999998874 346667777778899999988888887888776 36678899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048807 538 KLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPT 617 (757)
Q Consensus 538 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 617 (757)
+....+.. =...|-.+...|.-.|..++|+..+..+.+.- +-....+--+.--|.+.+.++-|.++|.+..... +-|
T Consensus 337 Kat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~D 413 (611)
T KOG1173|consen 337 KATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSD 413 (611)
T ss_pred HHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCc
Confidence 87765322 24579999999999999999999998876641 2222233445566888999999999999998753 447
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc---C-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048807 618 VVTYGALIHAFCVNGHVDEAMKIFKELSSS---S-NVS-PNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTY 692 (757)
Q Consensus 618 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 692 (757)
+...+-+.-.....+.+.+|..+|+..... . .-. --..+++.|+.+|.+.+++++|+..+++.+.. .+.|..++
T Consensus 414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~ 492 (611)
T KOG1173|consen 414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTH 492 (611)
T ss_pred chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHH
Confidence 778888877777889999999999887631 0 001 13456899999999999999999999999986 35688899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048807 693 NAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSE 736 (757)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 736 (757)
.+++-.|...|+++.|++.|.+.+ .+.||..+-..++..+..
T Consensus 493 asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 493 ASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 999999999999999999999998 478988666666655443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=145.34 Aligned_cols=260 Identities=19% Similarity=0.213 Sum_probs=66.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 048807 448 TLVDGMCRHGRINSAVEFFQEVTRKG-LCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQA 526 (757)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 526 (757)
.+...+.+.|++++|.+++.+..... .+.|...|..+.......++++.|...++++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 33555555666666666654433332 12233444444444555555666666666555543 1233344444444 455
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048807 527 GRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIG-MTPNSVTYNTLISFLSKSGNFSAARRV 605 (757)
Q Consensus 527 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 605 (757)
+++++|..++....+. .++...+..++..+.+.++++++..+++.+.+.. .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555544333 2334444455555555555555555555544321 123444455555555555555555555
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048807 606 LKKMVKEGLVP-TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKE 684 (757)
Q Consensus 606 ~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 684 (757)
+++.++.. | |......++..+...|+.+++..+++...+. .+.|...+..+..+|...|+.++|+..|++.....
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 55555532 3 3444555555555555555555555554441 12233344555555555555555555555555421
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 685 VRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 685 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
+.|+.....+++++...|+.++|.++.+++.
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -TT-HHHHHHHHHHHT----------------
T ss_pred -ccccccccccccccccccccccccccccccc
Confidence 2244444555555555555555555555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.7e-11 Score=118.87 Aligned_cols=477 Identities=13% Similarity=0.068 Sum_probs=316.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+..-+..+++-+..+.++.-|.-+-+++...+..| ...-.+..++.-.|+++.|..+...-.-. ..|..+..-...
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp--~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDP--ADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCh--HHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 34445556666667778888888888887776444 44445678888889999998887665433 347777777888
Q ss_pred HHHhcCChhHHHHHHHHH----HhC--CCCC-cccccCCHhH----HHHHH-------HHHHHcCCHHHHHHHHHHHHHh
Q 048807 338 RLCKLYRADEALEVFEKM----IAG--KETA-EISVEPDVII----FNTLI-------DGLCKVGKQEEALGLIEQMRLR 399 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~----~~~--~~~~-~~~~~~~~~~----~~~li-------~~~~~~g~~~~A~~~~~~~~~~ 399 (757)
++.+..++++|..++... ..- .+.. ...+.+|..- -+.-+ ..|....+.++|...+.+..
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al-- 168 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL-- 168 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH--
Confidence 899999999999998832 110 0000 0001111111 11111 23334445566666665553
Q ss_pred hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 048807 400 LQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGV----TPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLC 475 (757)
Q Consensus 400 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 475 (757)
..|...+..+...-.. ..-.+.+-++.+..... .-+......+.........-++....-.+..-.+..
T Consensus 169 -----~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~ 241 (611)
T KOG1173|consen 169 -----LADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLA 241 (611)
T ss_pred -----hcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhh
Confidence 3455444443322111 11122222222222111 112222222222211111111111111101111233
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048807 476 ANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLI 555 (757)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 555 (757)
.+........+-+...+++.+..++++...+.. ++....+..-|..+...|+..+-..+-.++.+.- +....+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 355666667777888999999999999999875 6677777778889999999999888888888863 44678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 048807 556 SGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVD 635 (757)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 635 (757)
--|...|+.++|.+.|.+....+ +.=...|-.+...|+-.|.-++|+..+..+.+. ++-....+.-+.--|.+.++++
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHH
Confidence 99999999999999999988764 334568999999999999999999999888764 1112222333455688899999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 048807 636 EAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVK--EVRP----NTNTYNAMFKGLRQKNMLDKAF 709 (757)
Q Consensus 636 ~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~l~~~~~~~g~~~~A~ 709 (757)
.|.++|.+... -.+.|+...+-+.-...+.+.+.+|..+|+..+.. .+.+ -..+++.|+.+|.+.+++++|+
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999876 34456778888888888889999999999998731 1111 2456889999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh-chhcc
Q 048807 710 KLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQG-YAVSA 754 (757)
Q Consensus 710 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~ 754 (757)
..+++.+.. .+-|..++.+++-.+...|+++.|.+++.+ +..+|
T Consensus 476 ~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 476 DYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 999999975 455778999999999999999999999977 34444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-11 Score=114.02 Aligned_cols=290 Identities=14% Similarity=0.151 Sum_probs=198.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 048807 421 SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCAN---AVTYTILITAFCNVNNFQEA 497 (757)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 497 (757)
+++.++|.++|-+|.+... .+..+.-+|.+.|.+.|..|.|++++..+.+..--+. ..+...|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4566777777777777522 2444556677777777777777777777766421111 12334566777778888888
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 498 IKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDI----VCYNHLISGFCKKKMLDKAYEVLQE 573 (757)
Q Consensus 498 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~ 573 (757)
+.+|..+.+.+ .--......|+..|-+..+|++|++.-+++.+.+..+.. ..|-.+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 88888777653 223445667777888888888888888877776544432 2455666666677888889999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 048807 574 MEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN 653 (757)
Q Consensus 574 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 653 (757)
..+.+ +.....--.+.+.+...|++++|.+.++...+.+..--..+...|..+|...|+.++....+.++.+ .. ++
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-~~--~g 281 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-TN--TG 281 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-cc--CC
Confidence 88775 3444455566778888899999999999988876444456778888899999999999999988877 23 33
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHc
Q 048807 654 TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLR---QKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 654 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~ 718 (757)
...-..+...-....-.+.|...+.+-+.. +|+...+..+++.-. ..|...+-...+.+|+..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 333444555444455566666666665554 688888888887653 345677777788888653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.8e-10 Score=107.35 Aligned_cols=199 Identities=12% Similarity=0.115 Sum_probs=120.8
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhH
Q 048807 268 RFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADE 347 (757)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 347 (757)
-+....++..|+.+++.....+-.....+-..+..++.+.|++++|...|..+...+ .++...+..|.-++.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 344567777787777766644433223344445567778888888888888877765 4566666667766777888888
Q ss_pred HHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 348 ALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKG 427 (757)
Q Consensus 348 A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 427 (757)
|..+-.+. +.+......|.+.-.+.|+-++-..+-+.+. ....--.+|.......-.+++|
T Consensus 110 A~~~~~ka-----------~k~pL~~RLlfhlahklndEk~~~~fh~~Lq--------D~~EdqLSLAsvhYmR~HYQeA 170 (557)
T KOG3785|consen 110 AKSIAEKA-----------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ--------DTLEDQLSLASVHYMRMHYQEA 170 (557)
T ss_pred HHHHHhhC-----------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHh--------hhHHHHHhHHHHHHHHHHHHHH
Confidence 88877664 3334444445555566677666665555553 1223334455555556667888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048807 428 LELFHLMKQEGVTPNVVTLNTL-VDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFC 489 (757)
Q Consensus 428 ~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 489 (757)
++++...+.. .|+....|.- .-+|.+..-++-+.+++.-.++. ++.+...-|.......
T Consensus 171 IdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 171 IDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLF 230 (557)
T ss_pred HHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHh
Confidence 8888887765 2344444433 33556666677777777666654 2224444454444333
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-09 Score=109.23 Aligned_cols=448 Identities=14% Similarity=0.177 Sum_probs=300.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 048807 242 ELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMK 321 (757)
Q Consensus 242 ~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 321 (757)
..+++.+.+.+ +++....+.....-.++..|+.++|....+...+.++. +.+.|..+.-.+....++++|++.|..++
T Consensus 25 kgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 25 KGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNAL 102 (700)
T ss_pred hHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44555555555 45666667776777788899999999999999987765 78999999999999999999999999999
Q ss_pred HCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 048807 322 ENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQ 401 (757)
Q Consensus 322 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 401 (757)
..+ +.|...|..+...-.+.|+++-....-...++.. +..-..|..++.++.-.|+...|..+++.....
T Consensus 103 ~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-------~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t-- 172 (700)
T KOG1156|consen 103 KIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-------PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT-- 172 (700)
T ss_pred hcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 876 5567778877777788899988888888877753 556778999999999999999999999998632
Q ss_pred CCCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 048807 402 KGCMPNAVTYNCL------INGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLC 475 (757)
Q Consensus 402 ~~~~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 475 (757)
....|+...|... .....+.|..++|++.+..-... +.-....-..-...+.+.+++++|..++..++..+
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-- 249 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-- 249 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--
Confidence 1134555554433 34456788888888887765543 22133334456778889999999999999999874
Q ss_pred CCHHHHH-HHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHhhHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048807 476 ANAVTYT-ILITAFCNVNNFQEAI-KWFDDMSRAGCSADSVVYFTL-ISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYN 552 (757)
Q Consensus 476 ~~~~~~~-~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 552 (757)
||...|. .+..++.+-.+.-++. .+|....+. .|....-..+ ++......-.+....++..+.+.|+++ ++.
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~ 324 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFK 324 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhh
Confidence 4555554 4445554333444444 566555443 1211111111 111111222333445666677777653 233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH----hCC----------CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 048807 553 HLISGFCKKKMLDKAYEVLQEME----DIG----------MTPNSVTY--NTLISFLSKSGNFSAARRVLKKMVKEGLVP 616 (757)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~----~~~----------~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 616 (757)
.+...|-.-.+.+-..++...+. ..| -+|....| -.++..|-+.|+++.|...++..+.. .|
T Consensus 325 dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TP 402 (700)
T KOG1156|consen 325 DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TP 402 (700)
T ss_pred hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cc
Confidence 34444433222221112221111 111 14555444 45677888999999999999999975 46
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-----
Q 048807 617 TV-VTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTN----- 690 (757)
Q Consensus 617 ~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----- 690 (757)
+. ..|..-...+...|++++|..++++..+ .. .+|...-.--+.-..++.+.++|.++.......|. +..
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~e-lD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~ 478 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQE-LD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAE 478 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHH
Confidence 54 4566667888999999999999999887 22 35665544666677789999999999988887664 221
Q ss_pred ---HHHH--HHHHHHHcCCHHHHHHHHHHH
Q 048807 691 ---TYNA--MFKGLRQKNMLDKAFKLMDRM 715 (757)
Q Consensus 691 ---~~~~--l~~~~~~~g~~~~A~~~~~~~ 715 (757)
.|-. =+.+|.+.|++.+|++=|...
T Consensus 479 mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 479 MQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 2222 244677888888877655444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-10 Score=112.85 Aligned_cols=286 Identities=13% Similarity=0.128 Sum_probs=168.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 422 GNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWF 501 (757)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (757)
|++.+|+++..+-.+.+-. ....|..-+.+--+.|+.+.+-.++.++.+....++..++-+........|+++.|..-.
T Consensus 98 G~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4444444444444443322 122333333444444444444444444444422333344444444444445555554444
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 502 DDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDI-------VCYNHLISGFCKKKMLDKAYEVLQEM 574 (757)
Q Consensus 502 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (757)
+++.+.+ +...........+|.+.|++.+...+...+.+.|.-.+. .+|+.+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 4444443 333444444445555555555555555555544433332 24555555555555555544555554
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 048807 575 EDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654 (757)
Q Consensus 575 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 654 (757)
... ...++..-.+++.-+.++|+.++|.++.++.++.+..|.... .-.+.+-++...-++..+.-.+..+. ++
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~--~p 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPE--DP 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCC--Ch
Confidence 433 244556666778888888889999988888888876666222 22345667777767777666663333 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 655 VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 655 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
..+.+|+..|.+.+.|.+|.+.|+...+. .|+..+|+.+.+++.+.|+..+|.+..++.+-.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 56888888899999999999999987774 688889999999999999999998888887643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-10 Score=123.96 Aligned_cols=471 Identities=17% Similarity=0.163 Sum_probs=269.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 048807 246 LVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDI 325 (757)
Q Consensus 246 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 325 (757)
++..+...|+.|+.+||.++|.-||..|+.+.|- +|..|.-...+.+...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455677899999999999999999999999999 9999998888888899999999999999888776
Q ss_pred CCccchHHHHHHHHHhcCChhH---HHHHHHHHHhC----CC-----------CCcccccCCHhHHHHHHHHHHHcCCHH
Q 048807 326 EPSVVTFGTIINRLCKLYRADE---ALEVFEKMIAG----KE-----------TAEISVEPDVIIFNTLIDGLCKVGKQE 387 (757)
Q Consensus 326 ~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~----~~-----------~~~~~~~~~~~~~~~li~~~~~~g~~~ 387 (757)
.|-..||+.|..+|...|+... ..+.++.+... |. ....+.-||. ...+....-.|-++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWA 156 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHH
Confidence 5678899999999999998754 33322222221 10 0011112222 22444455566666
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 048807 388 EALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS-GNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFF 466 (757)
Q Consensus 388 ~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 466 (757)
.+++++..+.. .....|-.+ .++-+... ..+++-..+-+...+ .|+..+|..++..-...|+.+.|..++
T Consensus 157 qllkll~~~Pv--sa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 157 QLLKLLAKVPV--SAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHhhCCc--ccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 66666655531 111111111 12222222 222333332222222 367777777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhH---------------
Q 048807 467 QEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMND--------------- 531 (757)
Q Consensus 467 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~--------------- 531 (757)
.+|.+.|++.+..-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+-.+..+|....
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAav 304 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAV 304 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHH
Confidence 777777777666655555544 56666677777777777777777766555544444332111
Q ss_pred ---------HHHHHH------------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CC-CCHHHHH
Q 048807 532 ---------ASLVVS------------KLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIG--MT-PNSVTYN 587 (757)
Q Consensus 532 ---------A~~~~~------------~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~ 587 (757)
|.+.++ +..-.|+......|...+. ....|+-++..++-..+..-- .. .++..|.
T Consensus 305 rsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~ 383 (1088)
T KOG4318|consen 305 RSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFG 383 (1088)
T ss_pred HHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHH
Confidence 111111 1111122222222322222 223566666666666664321 12 2333454
Q ss_pred HHHHHHHHcCC----------------------HHHHHHHHHHHHhC----------------CCCC-------CHHHHH
Q 048807 588 TLISFLSKSGN----------------------FSAARRVLKKMVKE----------------GLVP-------TVVTYG 622 (757)
Q Consensus 588 ~li~~~~~~g~----------------------~~~A~~~~~~m~~~----------------~~~p-------~~~~~~ 622 (757)
.++.-|.+.-+ ..+..++....... ...| -...-+
T Consensus 384 ~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ 463 (1088)
T KOG4318|consen 384 ALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIAN 463 (1088)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHH
Confidence 44444432111 11111111111000 0000 011123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 048807 623 ALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVK--EVRPNTNTYNAMFKGLR 700 (757)
Q Consensus 623 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~ 700 (757)
.++..++..-+..+++..-++... .-+ + ..|..||+.++...+.+.|..+.++.... .+.-|..-+..+.+.+.
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~-~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYED-LLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 334444444444444443333333 111 1 45888999999999999999999888642 12335556788889999
Q ss_pred HcCCHHHHHHHHHHHHHcC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHh
Q 048807 701 QKNMLDKAFKLMDRMIEHA-CHPDY-ISMEILTEWLSEAGQTEKLKKFVQ 748 (757)
Q Consensus 701 ~~g~~~~A~~~~~~~~~~g-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 748 (757)
+.+....+..+++++.+.- ..|.. .+.-.+++.....|+.+..++..+
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d 589 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLAD 589 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHH
Confidence 9999999999999887632 23332 556667777788888776665544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.6e-09 Score=106.73 Aligned_cols=459 Identities=13% Similarity=0.136 Sum_probs=307.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
+...+..| ..+++...+...+.+++..+. ...+.....-.+...|+-++|....+..++.+ ..+.+.|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 34445544 568889999999998885433 56666666667788899999999998888765 3477889988888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc
Q 048807 342 LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS 421 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (757)
..++++|++.|..++..+ +.|...|.-+.-.=.+.|+++.....-.+. ..-.+.....|..++.++.-.
T Consensus 88 dK~Y~eaiKcy~nAl~~~-------~dN~qilrDlslLQ~QmRd~~~~~~tr~~L----Lql~~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-------KDNLQILRDLSLLQIQMRDYEGYLETRNQL----LQLRPSQRASWIGFAVAQHLL 156 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHH----HHhhhhhHHHHHHHHHHHHHH
Confidence 899999999999999876 667888888877778888888777766655 233355678899999999999
Q ss_pred CCHHHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCC
Q 048807 422 GNIEKGLELFHLMKQEG-VTPNVVTLNTLV------DGMCRHGRINSAVEFFQEVTRKGLCANAVT-YTILITAFCNVNN 493 (757)
Q Consensus 422 g~~~~A~~~~~~m~~~g-~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~ 493 (757)
|+...|..+++...+.. -.|+...+.-.. ....+.|.+++|.+.+...... + .|... --.-...+.+.++
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhh
Confidence 99999999999988764 345665554433 3445678888888877665543 1 13222 2344667889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHH-HHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 494 FQEAIKWFDDMSRAGCSADSVVYFTLIS-GLCQAGRMNDAS-LVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVL 571 (757)
Q Consensus 494 ~~~A~~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 571 (757)
+++|..++..++..+ ||...|.-... ++.+-.+.-++. .+|....+. ++........=++......-.+...+++
T Consensus 235 lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 235 LEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred HHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHH
Confidence 999999999999874 66666655544 443344444444 566655543 1111111111111111222334555667
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------CC----------CCCCHHHH--HHHHHHHHhc
Q 048807 572 QEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVK--------EG----------LVPTVVTY--GALIHAFCVN 631 (757)
Q Consensus 572 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~----------~~p~~~~~--~~li~~~~~~ 631 (757)
..+.+.|+++ ++..+...|-.-...+ ++++.+. .| -+|....| .-++..|-+.
T Consensus 312 ~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~ 384 (700)
T KOG1156|consen 312 RPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL 384 (700)
T ss_pred HHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHc
Confidence 7778888664 3333443333222111 2222211 10 14454444 4567778899
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048807 632 GHVDEAMKIFKELSSSSNVSPNT-VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFK 710 (757)
Q Consensus 632 g~~~~A~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 710 (757)
|+++.|..+++.... . .|+. ..|..-...+.+.|++++|..++++..+.. .||...-.--+.-..++++.++|.+
T Consensus 385 g~~~~A~~yId~AId--H-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 385 GDYEVALEYIDLAID--H-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred ccHHHHHHHHHHHhc--c-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHH
Confidence 999999999999887 2 3554 467778899999999999999999999764 4555544455666678999999999
Q ss_pred HHHHHHHcCCCC--C----HHHHHHH--HHHHHhcCCHHHHHHHHhhc
Q 048807 711 LMDRMIEHACHP--D----YISMEIL--TEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 711 ~~~~~~~~g~~p--~----~~~~~~l--~~~~~~~g~~~~A~~~~~~~ 750 (757)
+.......|... | ...|..+ +.+|.+.|++.+|.+-+..+
T Consensus 461 ~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 461 VLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 999887766411 1 1334433 34566777777776655443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.1e-10 Score=108.53 Aligned_cols=292 Identities=13% Similarity=0.093 Sum_probs=232.7
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 048807 383 VGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSA 462 (757)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 462 (757)
.|++..|+++..+.. ..+ +.....|..-+.+.-+.|+.+.+-.++.+..+..-.++...+-+........|+++.|
T Consensus 97 eG~~~qAEkl~~rna---e~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 97 EGDFQQAEKLLRRNA---EHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred cCcHHHHHHHHHHhh---hcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 799999999998874 333 3345667777788889999999999999999875566777888889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-------hHHHHHHHHHhcCChhHHHHH
Q 048807 463 VEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSV-------VYFTLISGLCQAGRMNDASLV 535 (757)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~ 535 (757)
..-..++.+.+.. +..+......+|.+.|++.....++.++.+.+.-.+.. +|..+++-....+..+.-...
T Consensus 173 ~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 173 RENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 9999999988765 77888999999999999999999999999988766553 566666555555555554445
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 048807 536 VSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLV 615 (757)
Q Consensus 536 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 615 (757)
++..... .+.++..-.+++.-+.++|+.++|.++..+..+++..|.. ...-.+.+-++.+.-++..++..+.. +
T Consensus 252 W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~ 325 (400)
T COG3071 252 WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-P 325 (400)
T ss_pred HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-C
Confidence 5554443 3446667778888899999999999999999998765552 12234567788888888888877652 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048807 616 PTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPN 688 (757)
Q Consensus 616 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 688 (757)
.+...+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.+.+++....-.+|+
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 3567889999999999999999999998776 568999999999999999999999999999875433443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.8e-08 Score=101.49 Aligned_cols=408 Identities=14% Similarity=0.069 Sum_probs=239.5
Q ss_pred CCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC
Q 048807 325 IEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGC 404 (757)
Q Consensus 325 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 404 (757)
+..|...|..+.-++...|+++.+.+.|++.+.. .......|+.+...|...|.-..|..+++.... ....
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-------~~~~~e~w~~~als~saag~~s~Av~ll~~~~~--~~~~ 389 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-------SFGEHERWYQLALSYSAAGSDSKAVNLLRESLK--KSEQ 389 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-------hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc--cccC
Confidence 3445666666666667777777777777776543 234456677777777777777777777766531 1111
Q ss_pred CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHHc-----------CChHHHHHHHHH
Q 048807 405 MPNAVTYNCLINGFCK-SGNIEKGLELFHLMKQE--GV--TPNVVTLNTLVDGMCRH-----------GRINSAVEFFQE 468 (757)
Q Consensus 405 ~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~ 468 (757)
++|...+......|.+ .+.++++++.-.++... +. ......|..+.-+|... ....++++.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 3334444444444443 45666666666665551 11 11233444444444321 112345566666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 048807 469 VTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDI 548 (757)
Q Consensus 469 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 548 (757)
..+.+.. |+.+.--+.--|+..++++.|....++.++.+-..+...|..+.-.+...+++.+|+.+.+...+. ...|.
T Consensus 470 av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~ 547 (799)
T KOG4162|consen 470 AVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNH 547 (799)
T ss_pred HHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhh
Confidence 6655433 222222234446666777777777777776655566777777777777777777777777665543 11122
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHH--HHHHHH----HHcCCHHHHHHHHHHHH--------hC
Q 048807 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIG--MTPNSVTYN--TLISFL----SKSGNFSAARRVLKKMV--------KE 612 (757)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~--~li~~~----~~~g~~~~A~~~~~~m~--------~~ 612 (757)
.....-+..-...++.++|......+...- .++-..+.. .+.... .-.++..+|.+...++. ..
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 222233333444666777766655543210 000000000 000000 00011222222111111 00
Q ss_pred C---------C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048807 613 G---------L--VPT------VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALS 675 (757)
Q Consensus 613 ~---------~--~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 675 (757)
| . .|+ ...|......+.+.+..++|...+.+..+ ..+-....|...+..+...|.+++|.+
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 1 1 122 22345566778888999999988888876 233445578888888889999999999
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 676 LMEEMKVKEVRPNT-NTYNAMFKGLRQKNMLDKAFK--LMDRMIEHACHP-DYISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 676 ~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
.|...... .|+. .+..++..++.+.|+..-|.. ++..+++. +| ++..|..|+..+.+.|+.++|.+.|+-
T Consensus 706 af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 706 AFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 99999874 5654 577899999999998887877 99999874 55 569999999999999999999888864
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-08 Score=102.06 Aligned_cols=454 Identities=13% Similarity=0.112 Sum_probs=259.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcC
Q 048807 264 QLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLY 343 (757)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 343 (757)
+=++.+...|++++|.+...+++..++. +...+..-+-++.+.+.|++|+++.+.-... .-+.+-+-.-..+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 3456777888889999888888887643 6677777777888888888888655433211 011111112233445788
Q ss_pred ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHHc
Q 048807 344 RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN--AVTYNCLINGFCKS 421 (757)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~ 421 (757)
..++|+..++.. -+.+..+...-...+.+.|++++|+++|+.+. +...++ ...-..++.+-.
T Consensus 94 k~Dealk~~~~~----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~----kn~~dd~d~~~r~nl~a~~a-- 157 (652)
T KOG2376|consen 94 KLDEALKTLKGL----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLA----KNNSDDQDEERRANLLAVAA-- 157 (652)
T ss_pred cHHHHHHHHhcc----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHH----hcCCchHHHHHHHHHHHHHH--
Confidence 888888888722 12334466666777888899999999988884 111222 111222221111
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCChHHHHHHHHHHHHCC-------CCCCH-------HHHHHH
Q 048807 422 GNIEKGLELFHLMKQEGVTPNVVTLNT---LVDGMCRHGRINSAVEFFQEVTRKG-------LCANA-------VTYTIL 484 (757)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~-------~~~~~l 484 (757)
+... ..+......| ..+|.. ....+...|++.+|+++++...+.+ -..+. .+--.|
T Consensus 158 -----~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl 230 (652)
T KOG2376|consen 158 -----ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL 230 (652)
T ss_pred -----hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 1111 0122222222 223333 3345567888888888888873321 11111 112235
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHh----hHHHHHHHHHhcCChh-HHHHHHHHHHHCC-----------CCCCH
Q 048807 485 ITAFCNVNNFQEAIKWFDDMSRAGCSADSV----VYFTLISGLCQAGRMN-DASLVVSKLKEAG-----------FRPDI 548 (757)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~-~A~~~~~~~~~~g-----------~~~~~ 548 (757)
...+...|+-++|.++|...++.. ++|.. .-|.|+..-....-++ .++..++...... -.-..
T Consensus 231 ayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i 309 (652)
T KOG2376|consen 231 AYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAI 309 (652)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 556778899999999999988876 33432 2233333221111111 1222222211110 00011
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFL--SKSGNFSAARRVLKKMVKEGLVPTVVTYGALIH 626 (757)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (757)
..=+.++..| .+..+.+.++-...... .|.. .+..++... ++.....+|.+++...-+....-..++...++.
T Consensus 310 ~~N~~lL~l~--tnk~~q~r~~~a~lp~~--~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQ 384 (652)
T KOG2376|consen 310 YRNNALLALF--TNKMDQVRELSASLPGM--SPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQ 384 (652)
T ss_pred HHHHHHHHHH--hhhHHHHHHHHHhCCcc--CchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHH
Confidence 1113333333 34455666655544432 3333 333343332 223357788888887776532223456666777
Q ss_pred HHHhcCCHHHHHHHHH--------HhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH----HH
Q 048807 627 AFCVNGHVDEAMKIFK--------ELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVK--EVRPNTN----TY 692 (757)
Q Consensus 627 ~~~~~g~~~~A~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~----~~ 692 (757)
.....|+++.|.+++. .+.+ .+..|-. ...+...+.+.++.+.|..++.+.+.. .-.+... ++
T Consensus 385 l~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~ 461 (652)
T KOG2376|consen 385 LKISQGNPEVALEILSLFLESWKSSILE-AKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLM 461 (652)
T ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHH
Confidence 7888999999999998 5555 4444544 456677788888777777777776631 0122223 33
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhchhcc
Q 048807 693 NAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGYAVSA 754 (757)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 754 (757)
.-++..-.++|+-++|..+++++.+. .++|..+...++.+|+.. +.+.|..+-+.++..+
T Consensus 462 ~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~~ 521 (652)
T KOG2376|consen 462 REAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKLPPLK 521 (652)
T ss_pred HHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCcc
Confidence 33334446779999999999999975 466778888999888876 5788888888876443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-08 Score=105.74 Aligned_cols=443 Identities=14% Similarity=0.049 Sum_probs=270.0
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccc
Q 048807 251 AEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVV 330 (757)
Q Consensus 251 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 330 (757)
....+..|..+|..|.-+..++|+++.+.+.|++....-+. ....|+.+...|...|.-..|..+++.-....-.|+..
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 33345678999999999999999999999999998875433 67899999999999999999999998876653335444
Q ss_pred hHHHHH-HHH-HhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHc-----------CCHHHHHHHHHHHH
Q 048807 331 TFGTII-NRL-CKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKV-----------GKQEEALGLIEQMR 397 (757)
Q Consensus 331 ~~~~li-~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~ 397 (757)
+-..++ ..| -+.+..++++..-.+++....... -......|-.+.-+|... ....++++.+++..
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~--~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQR--SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 433333 333 346788888888888876221000 122334444444444432 12345556666653
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 048807 398 LRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCAN 477 (757)
Q Consensus 398 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 477 (757)
. .. +.|......+.--|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.....-.. |
T Consensus 472 ~--~d--~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N 546 (799)
T KOG4162|consen 472 Q--FD--PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-N 546 (799)
T ss_pred h--cC--CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-h
Confidence 1 12 22333333344456667777777777777777655556777777777777777777777777766654111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHH
Q 048807 478 AVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEA--GFRPDIVCYNHLI 555 (757)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li 555 (757)
-.....-+..-..-++.++|+.....++.. |...- ...+.++-....+....+.-. ...-...++..+.
T Consensus 547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 547 HVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred hhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 111111222233355666666555554431 00000 001111111122222211110 0111122333332
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC--CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 556 SGFCKKKMLDKAYEVLQEMEDIGM--TPN------SVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHA 627 (757)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~--~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 627 (757)
......+....-... +..... .|+ ...|......+.+.+..++|...+.+..... +.....|......
T Consensus 618 ~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~ 693 (799)
T KOG4162|consen 618 SLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLL 693 (799)
T ss_pred HHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHH
Confidence 222211111000000 111111 122 2245566777888899999998888887652 3356667777778
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 628 FCVNGHVDEAMKIFKELSSSSNVSPN-TVIYNILIDSLCKNNQVELALS--LMEEMKVKEVRPNTNTYNAMFKGLRQKNM 704 (757)
Q Consensus 628 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 704 (757)
+...|..++|.+.|..... +.|+ +.+..++..++.+.|+..-|.. ++..+.+.+ +-++..|..++..+.+.|+
T Consensus 694 ~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred HHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccc
Confidence 8888999999999988766 4455 4578899999999998777777 999999864 4578899999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 048807 705 LDKAFKLMDRMIEH 718 (757)
Q Consensus 705 ~~~A~~~~~~~~~~ 718 (757)
.++|.+.|..+.+.
T Consensus 770 ~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 770 SKQAAECFQAALQL 783 (799)
T ss_pred hHHHHHHHHHHHhh
Confidence 99999999988763
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-09 Score=101.34 Aligned_cols=417 Identities=15% Similarity=0.133 Sum_probs=224.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
+..++.+.|++++|..++..+...+ .++...|..|...+.-.|.+.+|..+-....+ +.-.-..+...-.+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCc
Confidence 5567889999999999999988755 45778888888888888999999987665433 33333444555667888
Q ss_pred hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHH-HHHHHHHcCC
Q 048807 345 ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNC-LINGFCKSGN 423 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~ 423 (757)
-++-....+.+... ..---+|.......-.+.+|.+++.++. .. .|+-...|. +.-+|.+..-
T Consensus 137 Ek~~~~fh~~LqD~-----------~EdqLSLAsvhYmR~HYQeAIdvYkrvL---~d--n~ey~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 137 EKRILTFHSSLQDT-----------LEDQLSLASVHYMRMHYQEAIDVYKRVL---QD--NPEYIALNVYMALCYYKLDY 200 (557)
T ss_pred HHHHHHHHHHHhhh-----------HHHHHhHHHHHHHHHHHHHHHHHHHHHH---hc--ChhhhhhHHHHHHHHHhcch
Confidence 77777777766432 2334456666666678899999999985 21 334444443 4557788888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHH
Q 048807 424 IEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNV-----NNFQEAI 498 (757)
Q Consensus 424 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~ 498 (757)
++-+.++++-.++. ++.+....|..+.-..+.=.-..|.+-...+.+.+-.. | ..+.-.++. .+-+.|+
T Consensus 201 ydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgAL 274 (557)
T KOG3785|consen 201 YDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGAL 274 (557)
T ss_pred hhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHH
Confidence 89999998887765 33345555555544444322222333333333322110 0 112222222 2334555
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------CCHHHHHHHH
Q 048807 499 KWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKK-------KMLDKAYEVL 571 (757)
Q Consensus 499 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-------g~~~~A~~~~ 571 (757)
+++-.+.+. -+..-..|+--|.+.+++.+|..+.+++.-. ++.-|-.-.-.+... ..+.-|.+.|
T Consensus 275 qVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~aalGQe~gSreHlKiAqqff 346 (557)
T KOG3785|consen 275 QVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVFAALGQETGSREHLKIAQQFF 346 (557)
T ss_pred HhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Confidence 555544432 1222333444566666666666665554321 222221111112222 2234455555
Q ss_pred HHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 048807 572 QEMEDIGMTPNSV-TYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNV 650 (757)
Q Consensus 572 ~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 650 (757)
+-.-+.+..-|.. --.++.+.+.-..++++.+..++....--...|...+ .+..+++..|++.+|+++|-++.. ..+
T Consensus 347 qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~-~~i 424 (557)
T KOG3785|consen 347 QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISG-PEI 424 (557)
T ss_pred HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcC-hhh
Confidence 4443333322221 1233444444455566666666655544222333333 355666666666666666665544 222
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 048807 651 SPNTVIY-NILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTY-NAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYI 725 (757)
Q Consensus 651 ~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 725 (757)
.|..+| ..|..+|.+.++.+-|++++-++.. +.+..+. ..+...|.+.+.+--|-+.|+.+.. ++|++.
T Consensus 425 -kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pE 495 (557)
T KOG3785|consen 425 -KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPE 495 (557)
T ss_pred -hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcc
Confidence 233333 3445566666666666666554432 1222222 3334455666665555555555432 344443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-10 Score=128.16 Aligned_cols=216 Identities=13% Similarity=-0.034 Sum_probs=113.7
Q ss_pred ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC
Q 048807 344 RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGN 423 (757)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (757)
++++|...++++++.+ +.+..++..+...+...|++++|...|++.. ...+.+...|..+...+...|+
T Consensus 319 ~~~~A~~~~~~Al~ld-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al----~l~P~~~~a~~~lg~~l~~~G~ 387 (553)
T PRK12370 319 AMIKAKEHAIKATELD-------HNNPQALGLLGLINTIHSEYIVGSLLFKQAN----LLSPISADIKYYYGWNLFMAGQ 387 (553)
T ss_pred HHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHCCC
Confidence 3566666666666654 4455566666666666666666666666653 2234445556666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 424 IEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDD 503 (757)
Q Consensus 424 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (757)
+++|+..+++..+.... +...+..++..+...|++++|...++++.+...+.+...+..+..+|...|+.++|...+++
T Consensus 388 ~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 388 LEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred HHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66666666666665322 12222233334455666666666666665543222344455566666666666666666666
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 504 MSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAG-FRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDI 577 (757)
Q Consensus 504 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (757)
+.... +.+....+.+...|...| ++|...++.+.+.. -.+....+ +-..|.-.|+.+.+..+ +++.+.
T Consensus 467 ~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 467 ISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 54431 222333444444555555 35555554444321 01111111 33334445665555555 665554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-10 Score=111.29 Aligned_cols=200 Identities=11% Similarity=0.089 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 548 IVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHA 627 (757)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 627 (757)
...+..+...|...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445556666666666666666666666553 3345566666666666677777777776666543 2244555666666
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048807 628 FCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDK 707 (757)
Q Consensus 628 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 707 (757)
+...|++++|.+.+++..+..........+..+...+...|++++|...+++..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 667777777777777666521122233455666667777777777777777776542 2245566667777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhch
Q 048807 708 AFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGYA 751 (757)
Q Consensus 708 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (757)
|.++++++.+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777777654 23344555556666666777777777666543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-10 Score=111.69 Aligned_cols=201 Identities=13% Similarity=0.084 Sum_probs=130.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
....+..+...|...|++++|.+.++++.+..+. +...+..+...+...|++++|.+.+++..+.+ +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456667777888888888888888887776533 56677777777777888888888887777654 334455666677
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING 417 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (757)
.+...|++++|.+.++++++... .+.....+..+...+...|++++|.+.+++.. ...+.+...+..+...
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPL-----YPQPARSLENAGLCALKAGDFDKAEKYLTRAL----QIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCcCChHHHHHHHHH
Confidence 77777777777777777765320 12234455666666777777777777777663 2223345566666666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048807 418 FCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVT 470 (757)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 470 (757)
+...|++++|.+.+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 179 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 179 YYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66777777777777666655 23344455555566666666666666555544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.9e-10 Score=124.44 Aligned_cols=214 Identities=13% Similarity=0.032 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048807 493 NFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQ 572 (757)
Q Consensus 493 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 572 (757)
++++|...+++.++.+ +.+...+..+...+...|++++|...|++..+.+. .+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 319 AMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3556666666665553 34455555555556666666666666666655531 234455556666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 048807 573 EMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSP 652 (757)
Q Consensus 573 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p 652 (757)
+..+.. +.+...+..++..+...|++++|...++++.+...+-+...+..+..++...|++++|...+.++.. . .|
T Consensus 397 ~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~-~~ 472 (553)
T PRK12370 397 ECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--Q-EI 472 (553)
T ss_pred HHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--c-cc
Confidence 666553 2222222233334445566666666666665442111333455555566666666666666666544 1 22
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 653 N-TVIYNILIDSLCKNNQVELALSLMEEMKVK-EVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 653 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
+ ....+.+...|...| ++|...++++.+. ...+....+ +-..+.-.|+-+.+..+ +++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 2 223444444555555 3555555555431 112222222 22233445555555544 55543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.7e-08 Score=93.61 Aligned_cols=274 Identities=12% Similarity=0.068 Sum_probs=163.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 048807 439 VTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFT 518 (757)
Q Consensus 439 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 518 (757)
++-|+.....+...+...|+.++|...|++....++. +..........+.+.|+++....+...+.... .-...-|-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 4445666677777777777777777777776654221 11222222333455666666666666655432 122333444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 519 LISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGN 598 (757)
Q Consensus 519 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 598 (757)
-...+....++..|+.+-++.+..+.. +...|-.-...+...|+.++|.-.|+...... |-+..+|..|+..|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 444455566777777777766665322 44455555566667777777777777766653 4566777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHhhhcCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 048807 599 FSAARRVLKKMVKEGLVPTVVTYGALI-HAFC-VNGHVDEAMKIFKELSSSSNVSPNTV-IYNILIDSLCKNNQVELALS 675 (757)
Q Consensus 599 ~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~ 675 (757)
+.+|.-+-+...+. ++.+..+...+. ..+. ...--++|.+++++..+ +.|+-. ..+.+...+...|+.++++.
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHH
Confidence 77777666655543 223444444332 2222 22234667777766544 345432 45666667777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048807 676 LMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 676 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
++++.+. ..||....+.|++.+...+.+++|++.|..++. ++|+.
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 7777765 357777777777777777777777777777764 45544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-07 Score=92.78 Aligned_cols=400 Identities=14% Similarity=0.065 Sum_probs=179.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcC-ChhhHHHHHHHHHhccCCCCCCcccHHH
Q 048807 145 PLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCD-HDRDAFNVLDEMLDRESQFPVNELTGDI 223 (757)
Q Consensus 145 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 223 (757)
+.+...-...+.+|-..|+-+.|.....+.++..+.+ --|.|+..+-+.| +-.++.--+.+.+.. .| ....
T Consensus 94 ~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p-~inlMla~l~~~g~r~~~~vl~ykevvre----cp---~aL~ 165 (564)
T KOG1174|consen 94 FGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSP-RINLMLARLQHHGSRHKEAVLAYKEVIRE----CP---MALQ 165 (564)
T ss_pred cccHHHHHHHHHHHHHHccchHHHHHHhcCCccccch-hHHHHHHHHHhccccccHHHHhhhHHHHh----cc---hHHH
Confidence 3455556667788888888899988888776532222 1233343333333 333444444444331 11 1111
Q ss_pred HHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHhC-CCCCCHHHHHHH
Q 048807 224 VFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCR--KGKTDEAWDVLHVLMKF-DAPLEAASCNAL 300 (757)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l 300 (757)
.+.++...+..|. +.-. ..|.....+++..+...-|.+++. .++...|...+-.+... -++.|+.....+
T Consensus 166 ~i~~ll~l~v~g~-----e~~S--~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~l 238 (564)
T KOG1174|consen 166 VIEALLELGVNGN-----EINS--LVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMAL 238 (564)
T ss_pred HHHHHHHHhhcch-----hhhh--hhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHH
Confidence 2222222110010 0000 011111223333333333443332 23333333333322221 123345555666
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCccch-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHH
Q 048807 301 LNALGREGDFKRMNQLFTEMKENDIEPSVVT-FGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDG 379 (757)
Q Consensus 301 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 379 (757)
...+...|+.++|...|++....+ |+..+ .......+.+.|+.++-..+...+.... +-...-|..-...
T Consensus 239 ak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-------~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 239 GKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-------KYTASHWFVHAQL 309 (564)
T ss_pred hhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-------hcchhhhhhhhhh
Confidence 666666666666666666655432 22211 1122223344555555555555544321 1223333333334
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 048807 380 LCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRI 459 (757)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 459 (757)
+....+++.|+.+-++.. ...+.++..|-.-...+...|+.++|.-.|+..+... +-+...|..|+..|...|++
T Consensus 310 l~~~K~~~rAL~~~eK~I----~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCI----DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhHHHHHHHHHHHh----ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 444555555655555543 1123334444444445555566666666665555432 12455566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 048807 460 NSAVEFFQEVTRKGLCANAVTYTILI-TAFCN-VNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVS 537 (757)
Q Consensus 460 ~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 537 (757)
.+|.-.-+...+. ++.+..+.+.+. ..+.. -.--++|.+++++.++.. |.-....+.+...+...|..++++.+++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 6655544444332 112333333331 11111 112344555555544432 1112233444444555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 538 KLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDI 577 (757)
Q Consensus 538 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (757)
..... .||....+.|.+.+...+.+.+|++.|...+..
T Consensus 463 ~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 463 KHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 55443 445555555555555555555555555555544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-06 Score=92.27 Aligned_cols=541 Identities=13% Similarity=0.120 Sum_probs=271.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHH-----HHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHH
Q 048807 148 INSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNV-----LIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGD 222 (757)
Q Consensus 148 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~ 222 (757)
..-+..+.+.|.+.|-+..|++.|..+....+. ++.+. -+..|.-.-.++++.+.++.|+..+ ...|.....
T Consensus 606 HyDra~IAqLCEKAGL~qraLehytDl~DIKR~-vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~N--irqNlQi~V 682 (1666)
T KOG0985|consen 606 HYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRV-VVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSAN--IRQNLQIVV 682 (1666)
T ss_pred cccHHHHHHHHHhcchHHHHHHhcccHHHHHHH-HHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHH--HHhhhHHHH
Confidence 334677888899999998888888766432111 11111 1334555567888999999888754 333333222
Q ss_pred HHHHHHHhhhhhccccChHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--
Q 048807 223 IVFYALMRREHVKNSVTDEELVGLVSKFAEH-----------GVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFD-- 289 (757)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 289 (757)
-+-..+ .+........++|+..... .+..|+.+.-..|.+-|+.|++.+.+++.++-.--+
T Consensus 683 Qvatky------~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpE 756 (1666)
T KOG0985|consen 683 QVATKY------HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPE 756 (1666)
T ss_pred HHHHHH------HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHH
Confidence 222222 1222335666777765443 245677778888999999999999998876422111
Q ss_pred -------------------------CCCCHHHH------HHHHHHHHHcCChhHHHHHHHHHHHCCCCCc----------
Q 048807 290 -------------------------APLEAASC------NALLNALGREGDFKRMNQLFTEMKENDIEPS---------- 328 (757)
Q Consensus 290 -------------------------~~~~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---------- 328 (757)
+.+|.+.| -..|..|.+.=+....-.+...++..++.-+
T Consensus 757 rvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~ 836 (1666)
T KOG0985|consen 757 RVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVR 836 (1666)
T ss_pred HHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHh
Confidence 11111111 1123344443333333333333333221111
Q ss_pred -cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHH-HH---HHHH------HH
Q 048807 329 -VVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEA-LG---LIEQ------MR 397 (757)
Q Consensus 329 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~---~~~~------~~ 397 (757)
.+...-|..-.-+.+++.--..+++..+..| ..|..++|+|...|...++-.+- ++ .++. ..
T Consensus 837 gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-------~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCE 909 (1666)
T KOG0985|consen 837 GQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-------SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCE 909 (1666)
T ss_pred ccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-------CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhc
Confidence 0111223333345556666667777777776 45778888877666544332110 00 0000 00
Q ss_pred Hh--------hcCC------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCH
Q 048807 398 LR--------LQKG------------------------CMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVT--PNV 443 (757)
Q Consensus 398 ~~--------~~~~------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~ 443 (757)
.+ ...| ...|...|..++. ..-.--.++.++..+.+++ .|+
T Consensus 910 KRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~-----e~n~~rRqLiDqVv~tal~E~~dP 984 (1666)
T KOG0985|consen 910 KRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN-----EENPYRRQLIDQVVQTALPETQDP 984 (1666)
T ss_pred ccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh-----ccChHHHHHHHHHHHhcCCccCCh
Confidence 00 0000 0112222222221 0001123444444443321 133
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHH---------------------------HHHHHHHhcCCH
Q 048807 444 VTLNTLVDGMCRHGRINSAVEFFQEVTRKGLC--ANAVTYT---------------------------ILITAFCNVNNF 494 (757)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~---------------------------~li~~~~~~g~~ 494 (757)
......+.++...+-..+-+++++++.-.+-. -+....| .+.......+-+
T Consensus 985 e~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~Ly 1064 (1666)
T KOG0985|consen 985 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLY 1064 (1666)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHH
Confidence 34444455555555555555555555432100 0000111 112333344556
Q ss_pred HHHHHHHHHHHHcC---------------------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048807 495 QEAIKWFDDMSRAG---------------------CSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNH 553 (757)
Q Consensus 495 ~~A~~~~~~m~~~~---------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 553 (757)
++|+.+|++..-.+ --..+..|..+..+-.+.|...+|++-|-+. .|+..|..
T Consensus 1065 EEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~e 1138 (1666)
T KOG0985|consen 1065 EEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLE 1138 (1666)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHH
Confidence 77777776532110 0113445667777777777777776655432 25666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048807 554 LISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGH 633 (757)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 633 (757)
.++...+.|.+++-...+....+..-.|.. -+.|+-+|++.+++.+-.+++. -||+.....+.+-|...|.
T Consensus 1139 Vi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~ 1209 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKM 1209 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhh
Confidence 777777777777777777666655444443 3456777777777666444331 3566666666666666666
Q ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH------------------------hCCCCCCH
Q 048807 634 VDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMK------------------------VKEVRPNT 689 (757)
Q Consensus 634 ~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~------------------------~~g~~p~~ 689 (757)
++.|.-+|..+. .|..|...+...|++..|...-+++- ..++--..
T Consensus 1210 y~aAkl~y~~vS----------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivha 1279 (1666)
T KOG0985|consen 1210 YEAAKLLYSNVS----------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHA 1279 (1666)
T ss_pred hHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEeh
Confidence 666666554332 25555555555565555554433321 11111122
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh
Q 048807 690 NTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEILTEWLSE 736 (757)
Q Consensus 690 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~ 736 (757)
.-...++.-|...|-++|-+.+++..+ |+..-+ ..|+-|.-.|++
T Consensus 1280 deLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHh
Confidence 234455555666666666666666655 444333 444455444444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.3e-07 Score=96.01 Aligned_cols=347 Identities=15% Similarity=0.148 Sum_probs=186.5
Q ss_pred CHHHHHHHH--HHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHH
Q 048807 147 SINSATLLI--RFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIV 224 (757)
Q Consensus 147 ~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~ 224 (757)
|..+-..++ +.|...|+.|.|.+...-+.. -.+|..|.+++++..++|-|.-.+-.|.... +
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS----~~vW~nmA~McVkT~RLDVAkVClGhm~~aR-g----------- 788 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS----DSVWDNMASMCVKTRRLDVAKVCLGHMKNAR-G----------- 788 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh----hHHHHHHHHHhhhhccccHHHHhhhhhhhhh-h-----------
Confidence 334444443 457778888888776655542 3679999999999999998887777664321 0
Q ss_pred HHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 225 FYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNAL 304 (757)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 304 (757)
.+-+++..+.|- .+-......-...|.+++|+.+|.+..+. ..|=..|
T Consensus 789 -------------------aRAlR~a~q~~~----e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKly 836 (1416)
T KOG3617|consen 789 -------------------ARALRRAQQNGE----EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLY 836 (1416)
T ss_pred -------------------HHHHHHHHhCCc----chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHH
Confidence 001111111111 01111122223456666666666665542 2222345
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHH----------hCCCC---CcccccCCHh
Q 048807 305 GREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMI----------AGKET---AEISVEPDVI 371 (757)
Q Consensus 305 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~~~~~---~~~~~~~~~~ 371 (757)
...|.+++|.++-+.=-+-. =..||.....-+-..++.+.|++.|++.- +.... ....-..|..
T Consensus 837 Qs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~ 913 (1416)
T KOG3617|consen 837 QSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDES 913 (1416)
T ss_pred HhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchH
Confidence 55666666666544321111 12344444444455566666666665431 11000 0000112344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 372 IFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVD 451 (757)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 451 (757)
.|.-....+...|+.+.|+.++...+ -|.++++..|-+|+.++|-++-++-- |......|.+
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A~------------D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR 975 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSAK------------DYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLAR 975 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHhh------------hhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHH
Confidence 45555556666778888888777664 26667777777888888877765422 5666777788
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-----------hHHHHH
Q 048807 452 GMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSV-----------VYFTLI 520 (757)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----------~~~~li 520 (757)
.|...|++.+|...|.++.. +..-|+. |+.+++++-+.-+.-|... .|.+ -....+
T Consensus 976 ~YEn~g~v~~Av~FfTrAqa---------fsnAIRl-cKEnd~~d~L~nlal~s~~---~d~v~aArYyEe~g~~~~~AV 1042 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQA---------FSNAIRL-CKENDMKDRLANLALMSGG---SDLVSAARYYEELGGYAHKAV 1042 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHHH---------HHHHHHH-HHhcCHHHHHHHHHhhcCc---hhHHHHHHHHHHcchhhhHHH
Confidence 88888888888888876653 3333443 3334444333222222111 1111 112233
Q ss_pred HHHHhcCChhHHHHHHHH--------HHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 521 SGLCQAGRMNDASLVVSK--------LKEA--GFRPDIVCYNHLISGFCKKKMLDKAYEVLQEME 575 (757)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~--------~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (757)
..|-+.|.+.+|+++--+ ++.. ....|+...+.-.+-++...++++|..++-...
T Consensus 1043 mLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1043 MLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 456667777666654211 1111 223456666777777777778888877776543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.5e-08 Score=102.57 Aligned_cols=270 Identities=17% Similarity=0.112 Sum_probs=186.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHCCCCCccchH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREG-----DFKRMNQLFTEMKENDIEPSVVTF 332 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~ 332 (757)
...+.......|.+.|+.++|..++..+++++|. |...|..+..+..-.. +.+...++|+++...- |.....
T Consensus 37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~ 113 (517)
T PF12569_consen 37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAP 113 (517)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccch
Confidence 3445667788899999999999999999999865 6667777777763332 5677788888887752 444443
Q ss_pred HHHHHHHHhcCChh-HHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC---------
Q 048807 333 GTIINRLCKLYRAD-EALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQK--------- 402 (757)
Q Consensus 333 ~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------- 402 (757)
..+.-.+.....+. .+...+..++..| +| .+++.|-..|....+.+-..+++.........
T Consensus 114 ~rl~L~~~~g~~F~~~~~~yl~~~l~Kg------vP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~ 184 (517)
T PF12569_consen 114 RRLPLDFLEGDEFKERLDEYLRPQLRKG------VP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDD 184 (517)
T ss_pred hHhhcccCCHHHHHHHHHHHHHHHHhcC------Cc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccc
Confidence 33333333322333 3455566666666 33 35666777777666666666666665322111
Q ss_pred --CCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 048807 403 --GCMPNAV--TYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANA 478 (757)
Q Consensus 403 --~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 478 (757)
..+|... ++.-+...|...|++++|++..++.+++... .+..|..-.+.+-+.|++.+|.+.++.+...... |-
T Consensus 185 ~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DR 262 (517)
T PF12569_consen 185 EEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DR 262 (517)
T ss_pred cccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hH
Confidence 1234443 4466678888999999999999999987322 3667888889999999999999999999887554 66
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh------h--HHHHHHHHHhcCChhHHHHHHHHHHH
Q 048807 479 VTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSV------V--YFTLISGLCQAGRMNDASLVVSKLKE 541 (757)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~--~~~li~~~~~~g~~~~A~~~~~~~~~ 541 (757)
..-+..+..+.++|++++|.+++....+.+..|... . ......+|.+.|++..|++.|..+.+
T Consensus 263 yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 263 YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 677777888889999999999998887765432221 1 23445678888888888877766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-08 Score=106.05 Aligned_cols=169 Identities=15% Similarity=0.063 Sum_probs=111.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 048807 552 NHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE--GLVPTVVTYGALIHAFC 629 (757)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~ 629 (757)
+.++..+++.-+..++...-++....- -+ ..|..||+-++...+.+.|..+.++.... .+..|..-+..+.+...
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 445555565555555554444333221 11 46888999999999999999999888653 23345566788888899
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 630 VNGHVDEAMKIFKELSSSSNVSPNT-VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKA 708 (757)
Q Consensus 630 ~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 708 (757)
+.+....+..++.++.+..-..|+. .++--+.+.....|+.+.-.++++-+...|+.-+ .-++....+.++...|
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a 615 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAA 615 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhh
Confidence 9999999999999988743333432 3455666777788998888888888877765442 2334445566777777
Q ss_pred HHHHHHHHHcCCCCCHHHHH
Q 048807 709 FKLMDRMIEHACHPDYISME 728 (757)
Q Consensus 709 ~~~~~~~~~~g~~p~~~~~~ 728 (757)
.+..+...+. .+|.+....
T Consensus 616 ~ea~e~~~qk-yk~~P~~~e 634 (1088)
T KOG4318|consen 616 QEAPEPEEQK-YKPYPKDLE 634 (1088)
T ss_pred hhcchHHHHH-hcCChHHHH
Confidence 7776665443 444443333
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.1e-10 Score=116.22 Aligned_cols=258 Identities=17% Similarity=0.107 Sum_probs=181.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc--------CCCcc-hHHHHHHHHHhcCChhhHHHHHHHHHhccC
Q 048807 142 QNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNN--------LRNTH-VRNVLIDVLLRCDHDRDAFNVLDEMLDRES 212 (757)
Q Consensus 142 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 212 (757)
.+.|.-..+...|..+|...|++++|..+|...... .+.+. ..+.+..+|...+++++|..+|.+++..
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i-- 270 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI-- 270 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--
Confidence 455666677888999999999999999999876543 12222 3567889999999999999999998762
Q ss_pred CCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC----
Q 048807 213 QFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKF---- 288 (757)
Q Consensus 213 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 288 (757)
...+. |.. .+.-..+++.|...|.+.|++++|...++++.+.
T Consensus 271 ------------~e~~~-----G~~-----------------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 271 ------------REEVF-----GED-----------------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred ------------HHHhc-----CCC-----------------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence 11111 111 1223457888888999999999999988887642
Q ss_pred -CC-CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCCCc----cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 048807 289 -DA-PLEA-ASCNALLNALGREGDFKRMNQLFTEMKEN---DIEPS----VVTFGTIINRLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 289 -~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 358 (757)
+. .+.+ ..++.++..++..+++++|..+++...+. -+.++ ..+++.|...|.+.|++++|.++|+++++.
T Consensus 317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 11 1222 35677888899999999999999877653 11122 356889999999999999999999999864
Q ss_pred CCCCcccc-cCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 359 KETAEISV-EPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRL---QKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLM 434 (757)
Q Consensus 359 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (757)
........ .-.-..++.|...|.+.++.++|.++|.+...-. ....+.-..+|..|+..|.+.|++++|+++.+..
T Consensus 397 ~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 397 LRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 32111111 1224567788888999999999999988764321 1112223456777777777777777777777665
Q ss_pred H
Q 048807 435 K 435 (757)
Q Consensus 435 ~ 435 (757)
.
T Consensus 477 ~ 477 (508)
T KOG1840|consen 477 L 477 (508)
T ss_pred H
Confidence 5
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.4e-10 Score=115.31 Aligned_cols=252 Identities=19% Similarity=0.143 Sum_probs=168.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHC---
Q 048807 254 GVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKF-----DA-PLEAA-SCNALLNALGREGDFKRMNQLFTEMKEN--- 323 (757)
Q Consensus 254 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 323 (757)
+.|.-..+...|..+|...|+++.|+++++..++. |. .|.+. ..+.+...|...+++.+|..+|++++.-
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34444556677999999999999999999998875 11 12333 3455888999999999999999999753
Q ss_pred --C-CCCc-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 324 --D-IEPS-VVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVI-IFNTLIDGLCKVGKQEEALGLIEQMRL 398 (757)
Q Consensus 324 --g-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~ 398 (757)
| -.|. ..+++.|...|++.|++++|...++.+++.-........|++. .++.++..++..+++++|..++.....
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2 1222 3567888889999999999999988876532111111233333 356677888889999999998887644
Q ss_pred hhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----C--CC-CHHHHHHHHHHHHHcCChHHHHHHHH
Q 048807 399 RLQKGCMPN----AVTYNCLINGFCKSGNIEKGLELFHLMKQEG----V--TP-NVVTLNTLVDGMCRHGRINSAVEFFQ 467 (757)
Q Consensus 399 ~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (757)
....-..++ ..+++.|...|.+.|++++|.++|+++++.. . .+ .-..++.|...|.+.+++++|.++|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 333222222 3567888888888888888888888776531 1 11 13456667777777777777777776
Q ss_pred HHHHC----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 468 EVTRK----GLC--ANAVTYTILITAFCNVNNFQEAIKWFDDMS 505 (757)
Q Consensus 468 ~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (757)
+.... |+. -...+|..|+..|...|++++|+++.+...
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 64432 211 123456666666666777776666666554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.6e-10 Score=103.92 Aligned_cols=234 Identities=11% Similarity=0.048 Sum_probs=163.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048807 482 TILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKK 561 (757)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 561 (757)
+.+..+|.+.|.+.+|.+.|+..++. .|-+.||..|-..|.+..++..|+.++.+-.+. ++-|+.....+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45677777788888888777777665 456667777777777777888887777777665 222444445566677777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 562 KMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIF 641 (757)
Q Consensus 562 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 641 (757)
++.++|.++|+...+.. +.++.....+...|.-.++++-|+.+|++++..|+. +...|+.+.-+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 78888888888777764 455556666666777777888888888888877755 6677777777777777788777777
Q ss_pred HHhhhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048807 642 KELSSSSNVSPNT--VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHA 719 (757)
Q Consensus 642 ~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 719 (757)
++... .-..|+. .+|-.+.......|++.-|.+.|+-.+..+ .-+.+.++.|.-.-.+.|++++|..++..+..
T Consensus 382 ~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s-- 457 (478)
T KOG1129|consen 382 QRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS-- 457 (478)
T ss_pred HHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--
Confidence 77765 2233332 356677777777788888888887777542 23456777777777777888888888777764
Q ss_pred CCCCH
Q 048807 720 CHPDY 724 (757)
Q Consensus 720 ~~p~~ 724 (757)
+.|+.
T Consensus 458 ~~P~m 462 (478)
T KOG1129|consen 458 VMPDM 462 (478)
T ss_pred hCccc
Confidence 35554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.5e-08 Score=103.54 Aligned_cols=474 Identities=11% Similarity=0.017 Sum_probs=223.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCcc-chHHHHHHHHHhcC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSV-VTFGTIINRLCKLY 343 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g 343 (757)
+.-.|.+.++...|+.-|+...+.+|. |...|..++.+|.+.|.+..|.++|.+..... |+. ..---.....|..|
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhh
Confidence 445677888888999999998888765 88899999999999999999999998887753 332 22222333557788
Q ss_pred ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHh----hcCCCCCCHHHHHHHHHHHH
Q 048807 344 RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLR----LQKGCMPNAVTYNCLINGFC 419 (757)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~li~~~~ 419 (757)
.+.+|+..+..++........+-..-..++-.+...+.-.|-..+|.+.++..... .......+...|-.+.++|.
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~ 724 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACY 724 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH
Confidence 99999988888775321110001111223333333333344444444444432210 01111223333333322221
Q ss_pred HcCCHH------HHHHHH-HHHHhCCCC--------------------CCHHHHHHHHHHHHH----c----CChHHHHH
Q 048807 420 KSGNIE------KGLELF-HLMKQEGVT--------------------PNVVTLNTLVDGMCR----H----GRINSAVE 464 (757)
Q Consensus 420 ~~g~~~------~A~~~~-~~m~~~g~~--------------------p~~~~~~~li~~~~~----~----g~~~~A~~ 464 (757)
-.-..+ .-..+| .+....+.- .+..+|..++..|.+ . .+...|..
T Consensus 725 ~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~ 804 (1238)
T KOG1127|consen 725 IFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIR 804 (1238)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHH
Confidence 100000 000000 011111111 122333333333332 1 11224555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 048807 465 FFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGF 544 (757)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 544 (757)
.+.+.++..- .+...|+.|.-. ...|++.-|.-.|-+-.... +....+|..+.-.+.+..+++.|...|...+...
T Consensus 805 c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd- 880 (1238)
T KOG1127|consen 805 CCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD- 880 (1238)
T ss_pred HHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-
Confidence 5555554322 245556555443 33345555554444433322 3345556666666666667777777776666543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--H--hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------
Q 048807 545 RPDIVCYNHLISGFCKKKMLDKAYEVLQEM--E--DIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE-------- 612 (757)
Q Consensus 545 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------- 612 (757)
+.+...|..........|+.-++..+|..- . ..|-.++..-|-.-.......|+.++-+...+++...
T Consensus 881 P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf 960 (1238)
T KOG1127|consen 881 PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYF 960 (1238)
T ss_pred chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHH
Confidence 224555555555555566666666666541 1 1121233333322223334445444433333222111
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048807 613 -GLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYN----ILIDSLCKNNQVELALSLMEEMKVKEVRP 687 (757)
Q Consensus 613 -~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p 687 (757)
+.+.+...|........+.+.++.|.....+...-....-+...|+ .+...++..|+++.|..-+...-. ..
T Consensus 961 ~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---ev 1037 (1238)
T KOG1127|consen 961 LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EV 1037 (1238)
T ss_pred hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hH
Confidence 2233445566555555666666666555554332111112333343 233344445555544433322111 01
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 688 NTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH-ACHPDY-ISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 688 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
+..+-..-+. ..-.|+++++.+.|++++.- .-..|. +....++......+..+.|+..+-+
T Consensus 1038 dEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe 1100 (1238)
T KOG1127|consen 1038 DEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFE 1100 (1238)
T ss_pred HHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHH
Confidence 1111111111 13356777888888877642 112232 2233444444555666666665544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.4e-08 Score=100.64 Aligned_cols=192 Identities=14% Similarity=0.218 Sum_probs=92.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048807 486 TAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLD 565 (757)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 565 (757)
.+-....++.+|+.+++.+.... .-...|..+...|...|+++.|.++|-+.- .++-.|.+|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 33344455556666555554432 122234445555566666666665554321 2344555566666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048807 566 KAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELS 645 (757)
Q Consensus 566 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 645 (757)
.|.++-.+.. |.......|-+-..-+-+.|++.+|.++|-..- .|+. .|.+|-+.|..+..+++.++..
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 6655544433 112223334444444455556666555553332 1332 2445556666655555554322
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048807 646 SSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLM 712 (757)
Q Consensus 646 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 712 (757)
. .--..|-..+..-|-..|+++.|.+.|-+..+ |.+-+..|..++.|++|.++-
T Consensus 878 ~----d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 878 G----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred h----hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 1 00112334445555556666666655544332 344445555566666665543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-10 Score=107.11 Aligned_cols=159 Identities=12% Similarity=0.083 Sum_probs=62.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048807 414 LINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNN 493 (757)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 493 (757)
+.+.+-..++.++|.++++...+.. +.++.....+...|.-.++++-|+.+|+++++.|+. ++..|+.+.-+|.-.++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcc
Confidence 3333334444444444444443331 113333333333333444444444444444444433 33344444434444444
Q ss_pred HHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 494 FQEAIKWFDDMSRAGCSAD--SVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVL 571 (757)
Q Consensus 494 ~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 571 (757)
+|-++.-|++.+..-..|+ ..+|..+.......|++..|.+-|+-.+..+. .....+|.|.-.-.+.|++++|..++
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHH
Confidence 4444444444333211111 22333444444444444444444444433321 12334444444444444444444444
Q ss_pred HHHH
Q 048807 572 QEME 575 (757)
Q Consensus 572 ~~~~ 575 (757)
+...
T Consensus 453 ~~A~ 456 (478)
T KOG1129|consen 453 NAAK 456 (478)
T ss_pred HHhh
Confidence 4443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-07 Score=101.05 Aligned_cols=571 Identities=10% Similarity=-0.025 Sum_probs=327.2
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc-CCCcchHHHHHHHHHhcCChhhHHHHHHHH
Q 048807 129 PESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNN-LRNTHVRNVLIDVLLRCDHDRDAFNVLDEM 207 (757)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 207 (757)
.+.++..|-+..+.. +.-..+|..|...|...-+...|.++|+++-+. ..+...+-...+.|++...++.|....-..
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 444555444444432 333457888888888877888888899888764 334567888888999988888888873333
Q ss_pred HhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 048807 208 LDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMK 287 (757)
Q Consensus 208 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 287 (757)
-+.++. ........-+.-...+..+...++..++...+.. |.|...|..|+.+|.++|++..|.++|.++..
T Consensus 553 ~qka~a-------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 553 AQKAPA-------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hhhchH-------HHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 222110 0000111111101122333445555555555443 56888999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCCccchHHHHHHHHHhcCChhHHHHHHHHHHh----
Q 048807 288 FDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN------DIEPSVVTFGTIINRLCKLYRADEALEVFEKMIA---- 357 (757)
Q Consensus 288 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 357 (757)
.+|. +...---.....+..|.+++|...+...... +..--..++......+...|-...|...+++.++
T Consensus 625 LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 625 LRPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred cCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 7544 3333333445567889999999998887643 1111123333333334444444444444444332
Q ss_pred ---CCCCCcccccCCHhHHHHHHHHHH-----------------------HcCCH--HH----HHHHHHHHHHhhcCCCC
Q 048807 358 ---GKETAEISVEPDVIIFNTLIDGLC-----------------------KVGKQ--EE----ALGLIEQMRLRLQKGCM 405 (757)
Q Consensus 358 ---~~~~~~~~~~~~~~~~~~li~~~~-----------------------~~g~~--~~----A~~~~~~~~~~~~~~~~ 405 (757)
.. ...+...|..+.+++. ..+.. .+ +.+.+-. .-...
T Consensus 704 ~l~h~------~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~-----hlsl~ 772 (1238)
T KOG1127|consen 704 SLIHS------LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA-----HLSLA 772 (1238)
T ss_pred HHHHh------hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH-----HHHHh
Confidence 21 1122223322222211 11111 00 0000000 00011
Q ss_pred CCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 048807 406 PNAVTYNCLINGFCK--------SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCAN 477 (757)
Q Consensus 406 ~~~~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 477 (757)
.+..+|..++..|.+ ..+...|+..+.+.++..- -+..+|+.|.-. ...|.+.-|...|-+...... ..
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~ 849 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TC 849 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cc
Confidence 234556666665554 1233577888888776532 267778877655 555777777776666555432 36
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCHHHHHH
Q 048807 478 AVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKE----AGFRPDIVCYNH 553 (757)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~~~~~~~~~ 553 (757)
..+|..+...+.+..+++-|...|....... |.+...|-.........|+.-++..+|..-.+ .|-.++..-|..
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c 928 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLC 928 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHH
Confidence 6788888888999999999999999887664 56777887777777788888888888876222 233344444444
Q ss_pred HHHHHHhcCCHHHHHH----------HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHH
Q 048807 554 LISGFCKKKMLDKAYE----------VLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE-GLVPTVVTYG 622 (757)
Q Consensus 554 li~~~~~~g~~~~A~~----------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~ 622 (757)
........|+.++-+. .+++.... .+.+...|.......-+.+.++.|.+...+...- ...-|...|+
T Consensus 929 ~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~-~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqyn 1007 (1238)
T KOG1127|consen 929 ATEIHLQNGNIEESINTARKISSASLALSYYFLG-HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYN 1007 (1238)
T ss_pred HHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc-CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4444445555544333 33333333 3566778888888888888888888777765421 0123444455
Q ss_pred H----HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-HHHHHHH
Q 048807 623 A----LIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVK-EVRPNT-NTYNAMF 696 (757)
Q Consensus 623 ~----li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-~~~~~l~ 696 (757)
. ....++..|.++.|...+..... ..+..+-..-+.. .-.++++++.+.|+++..- .-..+. +....++
T Consensus 1008 vak~~~gRL~lslgefe~A~~a~~~~~~----evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva 1082 (1238)
T KOG1127|consen 1008 VAKPDAGRLELSLGEFESAKKASWKEWM----EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVA 1082 (1238)
T ss_pred hhhhhhhhhhhhhcchhhHhhhhcccch----hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHH
Confidence 3 23344556666666554433221 0122222222222 3357889999999988752 122333 3344555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048807 697 KGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILT 731 (757)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 731 (757)
.+....+.-+.|...+-+.... -+|+..+...|.
T Consensus 1083 ~~~g~~~~k~~A~~lLfe~~~l-s~~~~~sll~L~ 1116 (1238)
T KOG1127|consen 1083 VCMGLARQKNDAQFLLFEVKSL-SKVQASSLLPLP 1116 (1238)
T ss_pred HHHhhcccchHHHHHHHHHHHh-CccchhhHHHHH
Confidence 6667777888888777666653 345554444443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.6e-07 Score=92.20 Aligned_cols=194 Identities=14% Similarity=0.195 Sum_probs=117.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 048807 450 VDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRM 529 (757)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 529 (757)
+.+......+.+|+.+++.+..+.. -...|..+.+-|+..|+++.|.++|-+.- .++-.|.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3344455666677777766665532 22345556677777777777777775432 244556677777777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 530 NDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKM 609 (757)
Q Consensus 530 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (757)
.+|.++-.+.. |.......|.+-..-+-+.|++.+|.++|-.+- .|+. -|.+|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 77777665543 223345556666666667777777777664332 3443 356677777777776666554
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048807 610 VKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLME 678 (757)
Q Consensus 610 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 678 (757)
... .-..|...+..-|...|++..|...|-+..+ |.+.+++|...+-|++|.++-+
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHh
Confidence 321 1234455566667777777777776655443 5566677777777777766543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-06 Score=88.82 Aligned_cols=446 Identities=14% Similarity=0.100 Sum_probs=259.5
Q ss_pred ccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH--HHHH--HHcCCh
Q 048807 235 KNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNAL--LNAL--GREGDF 310 (757)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--i~~~--~~~g~~ 310 (757)
+.....++|+....++...+ +.|...+..=+.++.+.+++++|+.+.+.-.. ..+++.. =.+| .+.+..
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred ccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHHcccH
Confidence 44556688888888888776 66777777778889999999999965443221 1222322 3444 478999
Q ss_pred hHHHHHHHHHHHCCCCCc-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHH
Q 048807 311 KRMNQLFTEMKENDIEPS-VVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEA 389 (757)
Q Consensus 311 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 389 (757)
++|+..+. |..++ ..+...-...+.+.|++++|+.+|+.+.+.+. -..|...-..++..- ..-.+
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-----dd~d~~~r~nl~a~~----a~l~~ 161 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-----DDQDEERRANLLAVA----AALQV 161 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----chHHHHHHHHHHHHH----HhhhH
Confidence 99999988 33333 33555566788899999999999999988761 111222222222111 11111
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCC------CCH-HHHHHHHHHHHH
Q 048807 390 LGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE-------GVT------PNV-VTLNTLVDGMCR 455 (757)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~------p~~-~~~~~li~~~~~ 455 (757)
- +.+... .....+-..+......+...|++.+|+++++...+. +-. -.. ..-..|...+-.
T Consensus 162 ~-~~q~v~----~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 Q-LLQSVP----EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred H-HHHhcc----CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1 222221 111112223334456677899999999999988321 111 011 112335556778
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHH-HHHHHHHHHHHcCC----------CCCHhhHH-HH
Q 048807 456 HGRINSAVEFFQEVTRKGLCANAV----TYTILITAFCNVNNFQ-EAIKWFDDMSRAGC----------SADSVVYF-TL 519 (757)
Q Consensus 456 ~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~----------~~~~~~~~-~l 519 (757)
.|+-++|..++..+++.... |.. .-|.|+.+-....-++ .++..++....... ....+..| .+
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988654 432 2333332211111111 22222222211100 00111111 12
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 520 ISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFC-KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGN 598 (757)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 598 (757)
+.. ..+..+.+.++-..... ..|....=+.+..++. +...+.+|.+++...-+........+.-.++......|+
T Consensus 316 L~l--~tnk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 316 LAL--FTNKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN 391 (652)
T ss_pred HHH--HhhhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Confidence 222 23334444444433322 2333332233333332 233577888888887776422234566677788889999
Q ss_pred HHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC-----CCCCCHHHHHHHHHHHH
Q 048807 599 FSAARRVLK--------KMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSS-----NVSPNTVIYNILIDSLC 665 (757)
Q Consensus 599 ~~~A~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~p~~~~~~~li~~~~ 665 (757)
++.|.+++. .+.+.+..|-.+ .++...+.+.++.+.|..++.+...-. +-..-..++.-++..-.
T Consensus 392 ~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 392 PEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 999999999 666655555544 456666777777666666666554310 11111223444455556
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 666 KNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRM 715 (757)
Q Consensus 666 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (757)
+.|+.++|..+++++.+.. ++|..+...++.+|++. +.+.|..+-.++
T Consensus 470 r~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 7899999999999999853 67888999999999876 677887766554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-07 Score=100.71 Aligned_cols=258 Identities=15% Similarity=0.151 Sum_probs=120.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048807 377 IDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRH 456 (757)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 456 (757)
+..+...|++++|++.++.- ...+.............+.+.|+.++|..++..+++++.. |..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~----~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKN----EKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhh----hhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhh
Confidence 34556677777777777664 2333334445555666677777777777777777776422 333344444443222
Q ss_pred -----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChh
Q 048807 457 -----GRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQ-EAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMN 530 (757)
Q Consensus 457 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 530 (757)
...+...++|+++...-+. ......+.-.+.....+. .+...+..++..|+|+ +++.+-..|....+.+
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH
Confidence 2345555666665554322 212211211111111222 2334445555555332 3444444444333333
Q ss_pred HHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048807 531 DASLVVSKLKEA----G----------FRPDIV--CYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLS 594 (757)
Q Consensus 531 ~A~~~~~~~~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 594 (757)
-...++...... + -.|... ++..+...|...|++++|++.+++.+++. |..+..|..-...|-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 333333333221 0 012221 22334444555555555555555555542 222344444455555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 595 KSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
+.|++++|.+.++........ |...-+-.+..+.+.|++++|.+++....+
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 555555555555555544321 344444444445555555555555555444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-08 Score=91.09 Aligned_cols=200 Identities=15% Similarity=0.074 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
+...|.-.|...|+...|..-++++++.++. +..+|..+...|.+.|+.+.|.+.|++.+... +.+-...|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 4566788899999999999999999998765 78899999999999999999999999999875 446677888899999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK 420 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (757)
..|++++|...|++.+..-. ...-..+|..+.-+..+.|+.+.|.+.|++.. .-.+....+...+.....+
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~-----Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL----~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 115 AQGRPEEAMQQFERALADPA-----YGEPSDTLENLGLCALKAGQFDQAEEYLKRAL----ELDPQFPPALLELARLHYK 185 (250)
T ss_pred hCCChHHHHHHHHHHHhCCC-----CCCcchhhhhhHHHHhhcCCchhHHHHHHHHH----HhCcCCChHHHHHHHHHHh
Confidence 99999999999999886431 33345678888888889999999999999874 3334456677888888899
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 421 SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
.|++-.|...++.....+. ++..+.-..|..--..|+-+.+.++=.++.+.
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 186 AGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred cccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999998888765 78888888888888888888887766666554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-08 Score=92.25 Aligned_cols=195 Identities=11% Similarity=0.060 Sum_probs=110.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048807 551 YNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCV 630 (757)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 630 (757)
...|.-.|.+.|+...|.+-+++.++.+ |.+..+|..+...|.+.|+.+.|.+.|++.++.. +-+..+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3444555666666666666666666654 4445566666666666666666666666666543 1244555555555666
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048807 631 NGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFK 710 (757)
Q Consensus 631 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 710 (757)
+|++++|...|++........--..+|..++-+..++|+.+.|.+.|++.++.. +-...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 666666666666665532222233456666666666666666666666666542 2233445555566666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 711 LMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 711 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
+++.....+ .+...+.-..+..-...|+.+.+.++=.+
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 666665543 25555555455555555666555554433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-08 Score=102.09 Aligned_cols=215 Identities=13% Similarity=-0.002 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 048807 241 EELVGLVSKFAEHGV---FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLF 317 (757)
Q Consensus 241 ~~~~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 317 (757)
+.++.-+.+++.... ......|..+...|.+.|+.++|...|+++.+.++. +...|+.+...+...|++++|.+.|
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 444455555554321 122455777888888889999999888888887754 7888888888888889999999888
Q ss_pred HHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 318 TEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 318 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
++.++.. +.+..+|..+...+...|++++|++.|++.++.+ +.+. ........+...++.++|.+.|.+..
T Consensus 122 ~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-------P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 122 DSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-------PNDP-YRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCH-HHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8888764 3345677778888888888899988888888754 2232 12222223345677888888886653
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC--C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048807 398 LRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE---GV--T-PNVVTLNTLVDGMCRHGRINSAVEFFQEVTR 471 (757)
Q Consensus 398 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 471 (757)
....++...| . ......|+..++ +.+..+.+. .. . ....+|..+...+.+.|++++|...|+++.+
T Consensus 193 ----~~~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 193 ----EKLDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred ----hhCCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1112222222 2 222334444333 244444321 10 0 1234566777777777777777777777776
Q ss_pred CC
Q 048807 472 KG 473 (757)
Q Consensus 472 ~~ 473 (757)
.+
T Consensus 265 ~~ 266 (296)
T PRK11189 265 NN 266 (296)
T ss_pred hC
Confidence 54
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-08 Score=100.48 Aligned_cols=226 Identities=13% Similarity=0.038 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHHHcCC-CC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 048807 492 NNFQEAIKWFDDMSRAGC-SA--DSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAY 568 (757)
Q Consensus 492 g~~~~A~~~~~~m~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 568 (757)
+..+.++.-+.+++.... .| ....|..+...+...|+.++|...|++..+... .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 345555666655554321 11 123466666667777777777777777766532 25667777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 048807 569 EVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSS 648 (757)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 648 (757)
..|++..+.. +.+..+|..+...+...|++++|.+.|++..+.. |+..........+...++.++|...|.+...
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 7777777664 3455666777777777777777777777777643 3322111112223445677777777765443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---C--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 048807 649 NVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVK---E--VR-PNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHP 722 (757)
Q Consensus 649 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 722 (757)
...|+...+ . ......|+..++ +.++.+.+. . +. .....|..++..+.+.|++++|+..|++.++.. +|
T Consensus 194 ~~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~ 268 (296)
T PRK11189 194 KLDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VY 268 (296)
T ss_pred hCCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc
Confidence 122332221 1 222234444333 233443321 0 01 123567778888888888888888888887642 34
Q ss_pred CHHHHH
Q 048807 723 DYISME 728 (757)
Q Consensus 723 ~~~~~~ 728 (757)
|.+-+.
T Consensus 269 ~~~e~~ 274 (296)
T PRK11189 269 NFVEHR 274 (296)
T ss_pred hHHHHH
Confidence 554443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-11 Score=83.58 Aligned_cols=49 Identities=33% Similarity=0.653 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 292 LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 292 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4566666666666666666666666666666666666666666666655
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.8e-06 Score=86.11 Aligned_cols=209 Identities=10% Similarity=0.051 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhcc-----------CCCcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCC
Q 048807 147 SINSATLLIRFFGKVSMYDYSLLVYNELDNN-----------LRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFP 215 (757)
Q Consensus 147 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 215 (757)
+..+|..+.++|.+..++|-|..++-.|... .++ ..--...-.-...|.+++|+.+|++-.+-|
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---- 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---- 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence 5678999999999999999997666544320 111 111122333357788899999988875532
Q ss_pred CCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH----------
Q 048807 216 VNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVL---------- 285 (757)
Q Consensus 216 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---------- 285 (757)
+++.+... .+...+|+++-+.--+ +. =..||.....-+-..++.+.|++.|++.
T Consensus 831 --------LlNKlyQs-----~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rm 894 (1416)
T KOG3617|consen 831 --------LLNKLYQS-----QGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRM 894 (1416)
T ss_pred --------HHHHHHHh-----cccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHH
Confidence 23333322 1222444443321110 11 1235555666666777777777777642
Q ss_pred HhCCC---------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHH
Q 048807 286 MKFDA---------PLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMI 356 (757)
Q Consensus 286 ~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 356 (757)
++.++ ..|...|..-...+-..|+.+.|+.+|..... |-+++...|-.|+.++|-++-++
T Consensus 895 L~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e-- 963 (1416)
T KOG3617|consen 895 LKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE-- 963 (1416)
T ss_pred HHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh--
Confidence 22111 11333444444445556666666666665443 44556666667777777766554
Q ss_pred hCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 357 AGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
..|..+...|.+.|...|++.+|..+|.+.+
T Consensus 964 ----------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 964 ----------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ----------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2356666777777887888888877777664
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=82.03 Aligned_cols=50 Identities=48% Similarity=1.042 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 406 PNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR 455 (757)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (757)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777776653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-07 Score=93.51 Aligned_cols=424 Identities=14% Similarity=0.040 Sum_probs=257.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCc-cchHHHHHHHHHhcC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPS-VVTFGTIINRLCKLY 343 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 343 (757)
=.++.+..|+++.|+..|-+.+..++. |.+.|..=..+|...|+|++|++=-.+-++. .|+ ...|.....++.-.|
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence 456778889999999999999998876 8899999999999999999998877766664 455 456888888888899
Q ss_pred ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHH-HHHHHHHHHhhcCCCCCCHHHHHHHH-----HH
Q 048807 344 RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEA-LGLIEQMRLRLQKGCMPNAVTYNCLI-----NG 417 (757)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~~~~li-----~~ 417 (757)
++++|+.-|.+-++.+ +.|...++.+..++ ..+.+ -+.| .+...|..+. +.
T Consensus 85 ~~~eA~~ay~~GL~~d-------~~n~~L~~gl~~a~----~~~~~~~~~~------------~~p~~~~~l~~~p~t~~ 141 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD-------PSNKQLKTGLAQAY----LEDYAADQLF------------TKPYFHEKLANLPLTNY 141 (539)
T ss_pred cHHHHHHHHHHHhhcC-------CchHHHHHhHHHhh----hHHHHhhhhc------------cCcHHHHHhhcChhhhh
Confidence 9999999999998875 66777888888777 11111 1111 1222222221 11
Q ss_pred HHHcCCHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHH-HCCCCC------------------
Q 048807 418 FCKSGNIEKGLELFHLMKQE-GVTP-NVVTLNTLVDGMCRHGRINSAVEFFQEVT-RKGLCA------------------ 476 (757)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~-g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~------------------ 476 (757)
+...-.+..-++.+..-... +... |.....++... ...+.. ....-..+. ..+..|
T Consensus 142 ~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l-~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~ 218 (539)
T KOG0548|consen 142 SLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQL-KGVDEL--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEER 218 (539)
T ss_pred hhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHH-hcCccc--cccccccccCCCCCCcccccCCCCCccchhHHHH
Confidence 11111121111111110000 0000 11111111110 000000 000000000 000000
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--
Q 048807 477 ----NAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVC-- 550 (757)
Q Consensus 477 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-- 550 (757)
-..-...+.++..+..+++.|++.+....+.. .+..-++....+|...|.+.+....-....+.|.. ...-
T Consensus 219 ~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~k 295 (539)
T KOG0548|consen 219 RVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYK 295 (539)
T ss_pred HHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHH
Confidence 11123456777778888999999998888764 45556677777888888888877777766665532 1112
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHH
Q 048807 551 -----YNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTV-VTYGAL 624 (757)
Q Consensus 551 -----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l 624 (757)
+..+..+|.+.++++.|...|.+.+.....|+. ..+....+++....+...-.+ |.. .-.-.-
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~k 364 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREK 364 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHH
Confidence 223445677778889999999887765433332 223344555555555544432 332 112222
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 625 IHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNM 704 (757)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 704 (757)
...+.+.|++..|++.+.++++ ..+.|...|....-+|.+.|.+..|+.-.+..++.. ++....|..=+.++....+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHH
Confidence 5667788899999999988887 235677788888888899999988888888877752 2334456555666677778
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048807 705 LDKAFKLMDRMIEHACHPDYISMEILTEWLSE 736 (757)
Q Consensus 705 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 736 (757)
+++|.+.|++.++. .|+..-+..-+.-|..
T Consensus 442 ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 442 YDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 88888888888864 5666444433344443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-05 Score=83.57 Aligned_cols=289 Identities=16% Similarity=0.182 Sum_probs=168.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 415 INGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNF 494 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 494 (757)
...+...+-+++|..+|++.. .+....+.|+. ..+.++.|.+.-++.. .+.+|+.+..+-.+.|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 344455566677777776543 24445555554 2455666655544432 456788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEM 574 (757)
Q Consensus 495 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (757)
.+|++-|-+. .|+..|..++....+.|.+++-.+++....+..-.|.+. ..|+-+|++.+++.+-.+++.
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-- 1190 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-- 1190 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc--
Confidence 8888776543 277788888888888888888888887777765555444 467778888887776655442
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh----------
Q 048807 575 EDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKEL---------- 644 (757)
Q Consensus 575 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---------- 644 (757)
-|+......+.+-|...|.++.|.-+|... ..|..|...+...|++..|...-++.
T Consensus 1191 -----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1191 -----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVC 1256 (1666)
T ss_pred -----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 345555555555555555555555554322 22333334444444444433322221
Q ss_pred --------------hhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048807 645 --------------SSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFK 710 (757)
Q Consensus 645 --------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 710 (757)
-. .++.-...-..-++.-|...|-+++-+.+++..+... +..-..|..|.-.|.+- +.++-.+
T Consensus 1257 faCvd~~EFrlAQiCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~E 1333 (1666)
T KOG0985|consen 1257 FACVDKEEFRLAQICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMME 1333 (1666)
T ss_pred HHHhchhhhhHHHhcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHH
Confidence 11 1122233345667788888888888888877765321 12233555565555443 3444444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 711 LMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 711 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
.++-.-.+ .| .--+++++-.+..|.|..-++.++
T Consensus 1334 Hl~LFwsR---vN---ipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1334 HLKLFWSR---VN---IPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHHh---cc---hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333211 11 224678888887888777666554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.7e-07 Score=86.28 Aligned_cols=315 Identities=15% Similarity=0.142 Sum_probs=161.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHH-
Q 048807 297 CNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNT- 375 (757)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~- 375 (757)
+++.+.-+.+..+++.|++++..-.++. +.+......+..+|....++..|...++++-.. .|...-|..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY 83 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLY 83 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHH
Confidence 4555555666677777777777666653 235555666666777777777777777776553 344443332
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 376 LIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN--GFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGM 453 (757)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 453 (757)
-...+.+.+.+.+|+++...|. . .++...-..-+. .....+++..+..+.++....| +..+.+......
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~----D--~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCll 154 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLL----D--NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLL 154 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhc----C--CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchhee
Confidence 2445566777777777777663 1 122211111111 2234566666666666655332 344445555555
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH----HHHHHHHHhcCCh
Q 048807 454 CRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVY----FTLISGLCQAGRM 529 (757)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~li~~~~~~g~~ 529 (757)
.+.|++++|.+-|+...+-+--.....||.-+ +..+.|+++.|++...++++.|+...+..- +-.++ .+.+
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD----vrsv 229 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID----VRSV 229 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc----hhcc
Confidence 66777777777777776654333445555433 344556777777777777776654221100 00000 0000
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048807 530 NDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDI-GMTPNSVTYNTLISFLSKSGNFSAARRVLKK 608 (757)
Q Consensus 530 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (757)
.....+.... -+..+|.-...+.+.|+.+.|.+.+..|.-+ ....|++|...+.-.-. .+++.+..+-+.-
T Consensus 230 gNt~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 230 GNTLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQF 301 (459)
T ss_pred cchHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHH
Confidence 0000000000 0112333444455666666666666665421 11335555544432211 2334444444444
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 609 MVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKE 643 (757)
Q Consensus 609 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 643 (757)
++..+. -...||..++-.||+..-++.|-.++.+
T Consensus 302 LL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 302 LLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 444322 2345666666666666666666666544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.2e-07 Score=93.27 Aligned_cols=199 Identities=11% Similarity=0.075 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccch---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVT---FGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDV 370 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 370 (757)
...|..+...+...|+.+.+.+.+.+..+.. +++... .......+...|++++|.+.++++++.. |.|.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------P~~~ 77 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-------PRDL 77 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCcH
Confidence 3445555555555555555555555444332 111111 1111223445666666666666666543 3333
Q ss_pred hHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048807 371 IIFNTLIDGLCK----VGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTL 446 (757)
Q Consensus 371 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 446 (757)
..+.. ...+.. .+..+.+.+.+... ....+........+...+...|++++|.+.+++..+.. +.+...+
T Consensus 78 ~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~ 151 (355)
T cd05804 78 LALKL-HLGAFGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAV 151 (355)
T ss_pred HHHHH-hHHHHHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHH
Confidence 33332 222222 23333333333321 22222333444455566666777777777777776653 2245556
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048807 447 NTLVDGMCRHGRINSAVEFFQEVTRKGLC-ANA--VTYTILITAFCNVNNFQEAIKWFDDMSR 506 (757)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (757)
..+...+...|++++|...+++..+.... ++. ..|..+...+...|++++|..++++...
T Consensus 152 ~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 152 HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 66666777777777777777766654321 121 2344566667777777777777777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-06 Score=92.45 Aligned_cols=202 Identities=10% Similarity=0.021 Sum_probs=100.2
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048807 369 DVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNT 448 (757)
Q Consensus 369 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 448 (757)
....|..+...+...|+.+++.+.+........... ............+...|++++|.+++++..+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~ 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA-TERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH
Confidence 355666666667677777776666655432111111 111222223344556777777777777776652 223333332
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 048807 449 LVDGMCR----HGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLC 524 (757)
Q Consensus 449 li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 524 (757)
...+.. .+..+.+.+.+.... ...+........+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 222222 233333333333311 1111122333344455666666666666666666553 334455555666666
Q ss_pred hcCChhHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 525 QAGRMNDASLVVSKLKEAGFR-PDI--VCYNHLISGFCKKKMLDKAYEVLQEME 575 (757)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~g~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (757)
..|++++|...+++....... ++. ..|..+...+...|++++|..++++..
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 666666666666665543211 121 223345555666666666666666554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.3e-06 Score=85.24 Aligned_cols=407 Identities=14% Similarity=0.091 Sum_probs=252.6
Q ss_pred ccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 048807 237 SVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQL 316 (757)
Q Consensus 237 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 316 (757)
.+..+.++.+|-..+... ++|.+.|+.-..+|.+.|++++|++=-.+..+..+. -...|+-...++.-.|+|++|..-
T Consensus 15 ~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccHHHHHHH
Confidence 456688888988888775 559999999999999999999999888887776544 367899999999999999999999
Q ss_pred HHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHH-----HHHHHcCCHHHHHH
Q 048807 317 FTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLI-----DGLCKVGKQEEALG 391 (757)
Q Consensus 317 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~ 391 (757)
|.+-++.. +.|...++.+..++. .+.+. +. ...++..|..+. +.+...-.+..-++
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~---------~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQ---------LFTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hh---------hccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 99999875 446666777776661 11111 11 111222222222 11211111211111
Q ss_pred HHHHHHHhhcCCCCCCHHHHH---HHHHHHHHcCCHHHH-HHHHHHHH-hCCCCC----------------------CHH
Q 048807 392 LIEQMRLRLQKGCMPNAVTYN---CLINGFCKSGNIEKG-LELFHLMK-QEGVTP----------------------NVV 444 (757)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A-~~~~~~m~-~~g~~p----------------------~~~ 444 (757)
.+.+- +-+...|. .++.+.......+.- ...-..+. ..+..| -..
T Consensus 154 ~~~~~--------p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~ 225 (539)
T KOG0548|consen 154 IIQKN--------PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAH 225 (539)
T ss_pred HhhcC--------cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhh
Confidence 11111 11111110 011111110000000 00000000 000011 112
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-------hHH
Q 048807 445 TLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSV-------VYF 517 (757)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~ 517 (757)
-...+.++..+..+++.|.+-+...++.. -+..-++....+|...|.+.++...-.+..+.|-. ... .+.
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~ 302 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHH
Confidence 34567778888889999999999988875 36666677778899999988888877776665421 111 223
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHc
Q 048807 518 TLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSV-TYNTLISFLSKS 596 (757)
Q Consensus 518 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~ 596 (757)
.+..+|.+.++++.|+..|.+.......|+. ..+....+++........-.+ |+.. -...-...+.+.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKK 371 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhc
Confidence 3444677788899999999987765444332 223344555555555444332 2221 122225667788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 048807 597 GNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN-TVIYNILIDSLCKNNQVELALS 675 (757)
Q Consensus 597 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 675 (757)
|++..|+..|.++++.. +-|...|....-+|.+.|.+..|++-.+...+ +.|+ ...|.--+.++....++++|++
T Consensus 372 gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie---L~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE---LDPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred cCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876 44788899999999999999999998888877 2344 3355555666666778999999
Q ss_pred HHHHHHhCCCCCCHHHH
Q 048807 676 LMEEMKVKEVRPNTNTY 692 (757)
Q Consensus 676 ~~~~m~~~g~~p~~~~~ 692 (757)
.|++.++. .|+..-+
T Consensus 448 ay~eale~--dp~~~e~ 462 (539)
T KOG0548|consen 448 AYQEALEL--DPSNAEA 462 (539)
T ss_pred HHHHHHhc--CchhHHH
Confidence 99998875 3554433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-07 Score=85.63 Aligned_cols=417 Identities=16% Similarity=0.117 Sum_probs=233.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHH-HHHHHH
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGT-IINRLC 340 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~ 340 (757)
+++.+..+.+..++++|++++..-.++.+. +......+..+|....++..|...|+++-.. .|...-|.- -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 555666677889999999999998887654 7788889999999999999999999999875 455444432 345677
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHH--HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIF--NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGF 418 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (757)
+.+.+.+|+++...|... ++...- ..-.......+++..+..++++.. . ..+..+.+...-..
T Consensus 90 ~A~i~ADALrV~~~~~D~---------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp---~---en~Ad~~in~gCll 154 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP---S---ENEADGQINLGCLL 154 (459)
T ss_pred HhcccHHHHHHHHHhcCC---------HHHHHHHHHHHHHHhcccccCcchHHHHHhcc---C---CCccchhccchhee
Confidence 899999999999988542 222211 111223345788888888888873 1 23455666666677
Q ss_pred HHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCC
Q 048807 419 CKSGNIEKGLELFHLMKQEG-VTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTY----TILITAFCNVNN 493 (757)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~ 493 (757)
.+.|+++.|.+-|....+.+ .. ....|+..+ +..+.|+++.|+++..+++++|++..+..- +-.+++- ..|+
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgN 231 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGN 231 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccc
Confidence 89999999999999998874 54 456777655 455779999999999999999875322110 0000000 0000
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048807 494 FQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEA-GFRPDIVCYNHLISGFCKKKMLDKAYEVLQ 572 (757)
Q Consensus 494 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 572 (757)
-.. |...+ -+..+|.-...+.+.|+++.|.+.+-.|.-. ....|++|...+.-. ...+++.+..+-+.
T Consensus 232 ---t~~----lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLq 300 (459)
T KOG4340|consen 232 ---TLV----LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQ 300 (459)
T ss_pred ---hHH----HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHH
Confidence 000 00000 1122333344455666666666665555432 123355555444322 12334444444455
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHH-HhcCCHHHHHHHHHHhhhcCCC
Q 048807 573 EMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLV-PTVVTYGALIHAF-CVNGHVDEAMKIFKELSSSSNV 650 (757)
Q Consensus 573 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~ 650 (757)
-+++.. |-...|+..++-.||+..-++-|-.++.+-...... .+...|+. ++++ ...-..++|++-++.+.+. +
T Consensus 301 FLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~--l 376 (459)
T KOG4340|consen 301 FLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGM--L 376 (459)
T ss_pred HHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHH--H
Confidence 555543 334456666666677766666666665442221100 12222322 2222 2234555555555444331 0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 651 SPNTVIYNILIDSLCKNNQ---VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 651 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
........+-+.--....+ +..|++-+++..+. -.....+-.+.+.+..++..+.++|....+.
T Consensus 377 ~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 377 TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 0000001111111111111 22223333333321 1112233445667778888888888877763
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.3e-05 Score=78.76 Aligned_cols=148 Identities=16% Similarity=0.190 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 599 FSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSP-NTVIYNILIDSLCKNNQVELALSLM 677 (757)
Q Consensus 599 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 677 (757)
.+....++++++..-...-..+|..+++.-.+..-++.|..+|.++.+ .+..+ +++++++++.-||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~-~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE-DKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh-ccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 445555555555432121233455566666666667777777777766 34444 55566666666654 5666777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 678 EEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY--ISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 678 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
+--+.+ ...++.--...++-+.+.|+-..|..+|++.+..++.||. .+|..+++.=+.-|+++-+.++-++
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 665543 1223333355666666777777777777777666555554 6677777776777777666655544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-05 Score=75.99 Aligned_cols=319 Identities=11% Similarity=0.084 Sum_probs=192.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccch-HHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVT-FGTI 335 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l 335 (757)
.++.-..-|...+...|++.+|+.-|..+++.++. +-.++-.-...|...|+...|+.=+...++. +||-.. -..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 45555566788888889999999999998886533 3444445556788889999998888888875 566322 2233
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLI 415 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 415 (757)
...+.+.|.+++|..-|+.++... |+..+ ...++.+.-..++-.. ....+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--------~s~~~---~~eaqskl~~~~e~~~-------------------l~~ql 162 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--------PSNGL---VLEAQSKLALIQEHWV-------------------LVQQL 162 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--------CCcch---hHHHHHHHHhHHHHHH-------------------HHHHH
Confidence 456788999999999999988764 21110 0111111111111111 11123
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048807 416 NGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQ 495 (757)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 495 (757)
..+...|+...|++....+++. .+.|...|..-..+|...|++..|+.-++.+-+..-. +..+..-+-..+...|+.+
T Consensus 163 ~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHH
Confidence 3344456666666666666655 2335555555666666666666666555555544322 3334444455555666666
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHH-----------H--HHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHH
Q 048807 496 EAIKWFDDMSRAGCSADSVVYFT-----------L--ISGLCQAGRMNDASLVVSKLKEAGFRPDIVC---YNHLISGFC 559 (757)
Q Consensus 496 ~A~~~~~~m~~~~~~~~~~~~~~-----------l--i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~---~~~li~~~~ 559 (757)
.++...++.++.+ ||-..+.. | +......++|.++++-.+...+....-.... +..+-.+|.
T Consensus 241 ~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 241 NSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence 6666666655542 33221110 0 1123456677777777777776643322222 334455666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048807 560 KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEG 613 (757)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 613 (757)
..|++.+|++.-.++++.. +.|..++.--..+|.-...++.|+.-|+...+.+
T Consensus 319 ~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred ccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7788888888888888764 4457788888888888888888888888888753
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.8e-06 Score=98.57 Aligned_cols=370 Identities=10% Similarity=-0.020 Sum_probs=228.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q 048807 335 IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDV--IIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYN 412 (757)
Q Consensus 335 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 412 (757)
....+...|++.+|.......- ..+. .........+...|+++.+..+++.+... ....+.....
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~----------d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~---~~~~~~~l~~ 413 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAG----------DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWE---VLLENPRLVL 413 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCC----------CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH---HHhcCcchHH
Confidence 3445566777776665444331 1111 11122233455678888877777765311 1111222334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC--C----CCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HH
Q 048807 413 CLINGFCKSGNIEKGLELFHLMKQEG--V----TPNV--VTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANA----VT 480 (757)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~ 480 (757)
.....+...|++++|..++....+.- . .+.. .....+...+...|++++|...+++..+.-...+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 45556677899999999888775431 0 1111 12223345566789999999999988764222222 24
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CH
Q 048807 481 YTILITAFCNVNNFQEAIKWFDDMSRAGC---SA--DSVVYFTLISGLCQAGRMNDASLVVSKLKEA----GFR--P-DI 548 (757)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~--~-~~ 548 (757)
.+.+...+...|++++|...+++.....- .+ ...++..+...+...|++++|...+++.... +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 45566778889999999999988764311 11 1234556677788899999999988776542 211 1 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHH--H
Q 048807 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIG--MTP--NSVTYNTLISFLSKSGNFSAARRVLKKMVKEG--LVPTVV--T 620 (757)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~--~ 620 (757)
..+..+...+...|++++|...+.+..... ..+ ....+..+...+...|++++|...++++.... ...... .
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 345556667778899999999988876431 111 23344556667788999999999998875421 111111 0
Q ss_pred -H-HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HH
Q 048807 621 -Y-GALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT---VIYNILIDSLCKNNQVELALSLMEEMKVK----EVRPN-TN 690 (757)
Q Consensus 621 -~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~ 690 (757)
. ...+..+...|+.+.|...+..... ....... ..+..+..++...|+.++|...+++.... |..++ ..
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~-~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPK-PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCC-CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 0 1122445568999999999877654 1111111 12456777888999999999999988752 32222 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 691 TYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
+...+..++.+.|+.++|...+.++++.
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667778889999999999999999875
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.5e-06 Score=98.76 Aligned_cols=370 Identities=11% Similarity=0.030 Sum_probs=231.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN-AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGM 453 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 453 (757)
.....+...|++.+|........ ..+. ..............|+++.+..++..+.......+..........+
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~------d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAG------DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCC------CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 34455667788877776655442 0000 1111222334556788888777776653211111222334445556
Q ss_pred HHcCChHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHH
Q 048807 454 CRHGRINSAVEFFQEVTRKGL------CAN--AVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADS----VVYFTLIS 521 (757)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~ 521 (757)
...|++++|..++..+.+.-. .+. ......+...+...|++++|...+++..+.-...+. ...+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 778999999999988765311 111 112223345567899999999999988763211221 24456666
Q ss_pred HHHhcCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHH
Q 048807 522 GLCQAGRMNDASLVVSKLKEA----GFR-PDIVCYNHLISGFCKKKMLDKAYEVLQEMEDI----GMT--P-NSVTYNTL 589 (757)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l 589 (757)
.+...|++++|...+++.... |.. ....++..+...+...|++++|...+++..+. +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 778899999999999887643 111 11235566777888999999999998886542 211 1 22345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHH-----HHH
Q 048807 590 ISFLSKSGNFSAARRVLKKMVKE--GLVP--TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIY-----NIL 660 (757)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-----~~l 660 (757)
...+...|++++|...+.+.... ...+ ....+..+...+...|++++|...+...............+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 66777889999999999987653 1112 23345556667888999999999998875411111111111 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHH
Q 048807 661 IDSLCKNNQVELALSLMEEMKVKEVRPNT---NTYNAMFKGLRQKNMLDKAFKLMDRMIEH----ACHPDY-ISMEILTE 732 (757)
Q Consensus 661 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~-~~~~~l~~ 732 (757)
+..+...|+.+.|...+............ ..+..+..++...|++++|..+++++++. |..++. .+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 24455689999999998776542111111 12456777888999999999999998753 333332 45667778
Q ss_pred HHHhcCCHHHHHHHHhhc
Q 048807 733 WLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 733 ~~~~~g~~~~A~~~~~~~ 750 (757)
++...|+.++|.+.+++.
T Consensus 740 a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 889999999999888763
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=0.0001 Score=75.39 Aligned_cols=428 Identities=13% Similarity=0.155 Sum_probs=244.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
|-|..+|+.||.-+..+ ..+++.+.++++...- +.....|..-|..-.+..+++...++|.+.+..- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 77999999999988666 9999999999998754 3367899999999999999999999999988763 355566655
Q ss_pred HHHHH-hcCChhH----HHHHHHHHHhCCCCCcccccC-CHhHHHHHHHH---------HHHcCCHHHHHHHHHHHHHhh
Q 048807 336 INRLC-KLYRADE----ALEVFEKMIAGKETAEISVEP-DVIIFNTLIDG---------LCKVGKQEEALGLIEQMRLRL 400 (757)
Q Consensus 336 i~~~~-~~g~~~~----A~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~~~ 400 (757)
+.--. ..|+... -.+.|+-.+... ++++ .-..|+..+.. |....+++...+++.++.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~ki-----g~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral--- 164 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKI-----GMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL--- 164 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHh-----ccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh---
Confidence 54322 2333333 233444444321 0111 12235555443 334456666777777764
Q ss_pred cCCCCCCHHHHHH------HHHHHH-------HcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCChHH--HH
Q 048807 401 QKGCMPNAVTYNC------LINGFC-------KSGNIEKGLELFHLMKQ--EGVTPNVVTLNTLVDGMCRHGRINS--AV 463 (757)
Q Consensus 401 ~~~~~~~~~~~~~------li~~~~-------~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~--A~ 463 (757)
......=...|+- -|+... +...+..|.++++++.. +|..-+..+ .-..|--++ +.
T Consensus 165 ~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv 237 (656)
T KOG1914|consen 165 VTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQV 237 (656)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHH
Confidence 1111100112221 111111 12234444444444432 122211111 000111111 11
Q ss_pred HHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCCHhhH-----HHHHHHHHhcCC----
Q 048807 464 EFFQEVTRK----GLC-ANAVTYTILITAFCNVNNFQEAIKWFDD-MSRAGCSADSVVY-----FTLISGLCQAGR---- 528 (757)
Q Consensus 464 ~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~~~-----~~li~~~~~~g~---- 528 (757)
+++...++. ++. .+..... ....-++++ +.-.+..|++.-. ...-+.+...|+
T Consensus 238 ~~W~n~I~wEksNpL~t~~~~~~~------------~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a 305 (656)
T KOG1914|consen 238 ELWKNWIKWEKSNPLRTLDGTMLT------------RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDA 305 (656)
T ss_pred HHHHHHHHHHhcCCcccccccHHH------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccc
Confidence 112111110 110 0000000 000111111 1111222222110 011112333343
Q ss_pred ---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 529 ---MNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKK---MLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAA 602 (757)
Q Consensus 529 ---~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 602 (757)
-+++..+++.....-..-+..+|..+.+---..- +.+.....+++++..-...-..+|..++..-.+..-+..|
T Consensus 306 ~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaa 385 (656)
T KOG1914|consen 306 KSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAA 385 (656)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHH
Confidence 3455556655544322223344444433221111 3566667777776543222335778888888888899999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 603 RRVLKKMVKEGLVP-TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMK 681 (757)
Q Consensus 603 ~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 681 (757)
..+|.++.+.+..+ ++.+.++++.-|| .++.+-|.++|+--.+..| .+...-...++-+...++-..|..+|++..
T Consensus 386 R~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l 462 (656)
T KOG1914|consen 386 RKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVL 462 (656)
T ss_pred HHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 99999999987777 7888888887766 5789999999998766343 344445677888889999999999999999
Q ss_pred hCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 682 VKEVRPN--TNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 682 ~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
..++.|+ ..+|..+++-=..-|+...+.++-+++..
T Consensus 463 ~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 463 TSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 8866665 46899999988999999999999888865
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-05 Score=75.61 Aligned_cols=316 Identities=13% Similarity=0.128 Sum_probs=176.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHh
Q 048807 292 LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVI 371 (757)
Q Consensus 292 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 371 (757)
.++.-..-+...+...|++..|+.-|...++-+ +.+..++-.-...|...|+...|+.-+.++++ .+||-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--------lKpDF~ 106 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--------LKPDFM 106 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHh--------cCccHH
Confidence 345555666677777777777777777777643 22333344444567777777777777777776 356643
Q ss_pred HH-HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 372 IF-NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLV 450 (757)
Q Consensus 372 ~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 450 (757)
.- ..-...+.+.|.+++|..-|+.+.. . .|+. |...+|.+-+..+.+ .......+
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~---~--~~s~-------------~~~~eaqskl~~~~e------~~~l~~ql 162 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQ---H--EPSN-------------GLVLEAQSKLALIQE------HWVLVQQL 162 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHh---c--CCCc-------------chhHHHHHHHHhHHH------HHHHHHHH
Confidence 32 2234556677777777777776641 1 1211 111122211111111 11122334
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChh
Q 048807 451 DGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMN 530 (757)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 530 (757)
..+...|+...|+.....+++.. +.|...|..-..+|...|+...|+.-++...+.. ..+..+..-+-..+...|+.+
T Consensus 163 ~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHH
Confidence 44556788888888888888763 3377777777888888888888887777665543 335556666777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHH----HHH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHH
Q 048807 531 DASLVVSKLKEAGFRPDIVCY----NHL---------ISGFCKKKMLDKAYEVLQEMEDIGMTPNSVT---YNTLISFLS 594 (757)
Q Consensus 531 ~A~~~~~~~~~~g~~~~~~~~----~~l---------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~ 594 (757)
.++...++.++. .||...+ ..+ +......+++.++.+-.+...+.......+. +..+-.++.
T Consensus 241 ~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 241 NSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence 888888888775 4554321 111 1112234444445554444444421111111 222233344
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 595 KSGNFSAARRVLKKMVKEGLVP-TVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
..|++.+|++...+.++. .| |+.++.--..+|.-...++.|+.-|+...+
T Consensus 319 ~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred ccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 455555555555555543 23 245555555555555555555555555544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-07 Score=96.82 Aligned_cols=89 Identities=10% Similarity=0.110 Sum_probs=48.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048807 487 AFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDK 566 (757)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 566 (757)
-+.+.|++.+|.-.|+..++.+ |.+...|..|.......++-..|+..+++..+.... +....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3455666666666666655553 344555555555555555555555555555554321 34455555555555555555
Q ss_pred HHHHHHHHHhC
Q 048807 567 AYEVLQEMEDI 577 (757)
Q Consensus 567 A~~~~~~~~~~ 577 (757)
|.+.++..+..
T Consensus 372 Al~~L~~Wi~~ 382 (579)
T KOG1125|consen 372 ALKMLDKWIRN 382 (579)
T ss_pred HHHHHHHHHHh
Confidence 55555555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-07 Score=93.86 Aligned_cols=253 Identities=13% Similarity=0.100 Sum_probs=133.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHH
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDA 532 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 532 (757)
+.-.|++..++.-.+ ........+......+.++|...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344577777765444 222221222334445567777777766543 3332222 44544444444333332344444
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 533 SLVVSKLKEAGFRP-DIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVK 611 (757)
Q Consensus 533 ~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (757)
..-+++.......+ +.........++...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444333322221 2222233334555667777777766542 2455555667777777777777777777776
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048807 612 EGLVPTVVTYGALIHAFCV----NGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRP 687 (757)
Q Consensus 612 ~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 687 (757)
. ..|. +...+..++.. .+.+.+|.-+|+++.+ ...++..+.+.+..++...|++++|.+++.+..+.+ +-
T Consensus 160 ~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~ 233 (290)
T PF04733_consen 160 I--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PN 233 (290)
T ss_dssp C--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CC
T ss_pred c--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cC
Confidence 4 2332 33334443322 2357777777777766 334666677777777777777777777777766543 33
Q ss_pred CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCH
Q 048807 688 NTNTYNAMFKGLRQKNML-DKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 688 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~ 724 (757)
++.++..++.+....|+. +.+.+++.++.. ..|++
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h 269 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTS
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCC
Confidence 455666666666667766 455666666654 35554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.4e-07 Score=92.41 Aligned_cols=240 Identities=14% Similarity=0.081 Sum_probs=169.9
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
.||++. -..-+.+.|++.+|.-.|+..++.+|. +..+|-.|......+++-..|+..+++.++.+ +-|......|
T Consensus 285 ~pdPf~---eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaL 359 (579)
T KOG1125|consen 285 HPDPFK---EGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMAL 359 (579)
T ss_pred CCChHH---HHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHH
Confidence 345544 334567999999999999999999876 89999999999999999999999999999975 4567788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCccccc--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISVE--PDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNC 413 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 413 (757)
.-.|...|.-.+|++.+++.+........... ++...-+. ..+.....+....++|-++.. ..+..+|......
T Consensus 360 AVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~--~~~~~~DpdvQ~~ 435 (579)
T KOG1125|consen 360 AVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAAR--QLPTKIDPDVQSG 435 (579)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHH--hCCCCCChhHHhh
Confidence 89999999999999999998765410000000 00000000 111112223344455555531 3444467777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048807 414 LINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNN 493 (757)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 493 (757)
|.-.|.-.|++++|.+.|+.++..... |...||-|...++...+.++|+..|.++++..+. -+.+...|.-.|...|.
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGA 513 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhh
Confidence 888888888888888888888876432 6677888888888888888888888888876332 12344446667888888
Q ss_pred HHHHHHHHHHHHH
Q 048807 494 FQEAIKWFDDMSR 506 (757)
Q Consensus 494 ~~~A~~~~~~m~~ 506 (757)
+++|.+.|-..+.
T Consensus 514 ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 514 YKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888766543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3e-06 Score=95.05 Aligned_cols=225 Identities=11% Similarity=0.082 Sum_probs=156.7
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048807 510 SADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPD-----IVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSV 584 (757)
Q Consensus 510 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 584 (757)
|.....|-..|....+.++.++|.+++++.+.. +.+. ...|.++++.-...|.-+...++|+++.+.. ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 445566777777777777777777777776654 2111 2356677776667777777788888877652 2345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 048807 585 TYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSL 664 (757)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~ 664 (757)
.|..|...|.+.+.+++|.++++.|.++ +.-....|...+..+.++.+-+.|..++.+..+...-........-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 6777888888888888888888888875 334567777788888888888888888888777221111333455566667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCC
Q 048807 665 CKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY--ISMEILTEWLSEAGQ 739 (757)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~ 739 (757)
.+.|+.+.+..+|+..+.. .+.-...|+.+++.-.++|+.+.+..+|++.+..++.|-. ..|.-.+..=...|+
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 7788888888888887764 2345567888888888888888888888888887777754 566666665556565
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.6e-07 Score=91.82 Aligned_cols=247 Identities=15% Similarity=0.143 Sum_probs=105.8
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGF 418 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (757)
+.-.|.+..++.-.+ ..... .+.+.....-+.++|...|+.+.++ .++ ..+..|.......+...+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~------~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei----~~~~~~~l~av~~la~y~ 76 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFS------PENKLERDFYQYRSYIALGQYDSVL---SEI----KKSSSPELQAVRLLAEYL 76 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTST------CHHHHHHHHHHHHHHHHTT-HHHHH---HHS-----TTSSCCCHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHhh-ccCCC------chhHHHHHHHHHHHHHHcCChhHHH---HHh----ccCCChhHHHHHHHHHHH
Confidence 344566666665444 22211 1223344445566666667665433 333 222245555554444444
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048807 419 CKSGNIEKGLELFHLMKQEGVT-PNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEA 497 (757)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 497 (757)
...++-+.++.-+++....... .+..........+...|++++|++++... .+.......+..|.+.++++.|
T Consensus 77 ~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA 150 (290)
T PF04733_consen 77 SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLA 150 (290)
T ss_dssp CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHH
T ss_pred hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHH
Confidence 3334444444444333322222 12222222233444456666666554332 1344444555566666666666
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 498 IKWFDDMSRAGCSADSVVYFTLISGLCQ----AGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQE 573 (757)
Q Consensus 498 ~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (757)
.+.++.|.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. +.+++.+.+.+..+....|++++|.+++.+
T Consensus 151 ~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 151 EKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66666665442 12 222223322221 12355555555554333 334444455555555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 048807 574 MEDIGMTPNSVTYNTLISFLSKSGNF-SAARRVLKKMV 610 (757)
Q Consensus 574 ~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 610 (757)
..+.+ +.|..+...++......|+. +.+.+.+.++.
T Consensus 227 al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 227 ALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 44433 23334444444444444444 33444444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=6e-06 Score=83.23 Aligned_cols=214 Identities=13% Similarity=0.069 Sum_probs=142.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREG-DFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
+..+-..+...++.++|+.+.+++++.++. +..+|+.-..++...| ++++++..++++.+.+ +.+..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 334444556677888888888888887655 6677877777777777 5788888888888765 345566776655566
Q ss_pred hcCCh--hHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 048807 341 KLYRA--DEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGF 418 (757)
Q Consensus 341 ~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (757)
+.|+. ++++..++++++.+ +.|..+|+...-.+...|+++++++.++++. +..+.|..+|+.....+
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I----~~d~~N~sAW~~R~~vl 186 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLL----EEDVRNNSAWNQRYFVI 186 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHCCCchhHHHHHHHHH
Confidence 66653 66788888888765 6677888888888888888888888888874 23355677777766655
Q ss_pred HHc---CC----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048807 419 CKS---GN----IEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRH----GRINSAVEFFQEVTRKGLCANAVTYTILITA 487 (757)
Q Consensus 419 ~~~---g~----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 487 (757)
.+. |. .+++++...++++... -|...|+-+...+... +...+|.+.+.+..+.++. +......|++.
T Consensus 187 ~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~ 264 (320)
T PLN02789 187 TRSPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDL 264 (320)
T ss_pred HhccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHH
Confidence 544 22 2456666666666533 2566677666666652 3345577777666654332 55666667777
Q ss_pred HHh
Q 048807 488 FCN 490 (757)
Q Consensus 488 ~~~ 490 (757)
|+.
T Consensus 265 ~~~ 267 (320)
T PLN02789 265 LCE 267 (320)
T ss_pred HHh
Confidence 664
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00069 Score=73.77 Aligned_cols=527 Identities=15% Similarity=0.118 Sum_probs=289.2
Q ss_pred HhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 192 LRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCR 271 (757)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~ 271 (757)
...+++.+|+...++..++ .||.. +..++.++... +.+..+++..+++.....+.. |..|...+-.+|..
T Consensus 20 ld~~qfkkal~~~~kllkk----~Pn~~-~a~vLkaLsl~----r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK----HPNAL-YAKVLKALSLF----RLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRD 89 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH----CCCcH-HHHHHHHHHHH----HhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHH
Confidence 3455566666666666654 34442 33344444322 233345666666655555433 78889999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcC-Ch-----
Q 048807 272 KGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLY-RA----- 345 (757)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~----- 345 (757)
.|+.++|..+++++.+.. |+......+..+|.+.+++.+-.+.--+|-+. ++-+.+.+-++++.+...- ..
T Consensus 90 ~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCccccc
Confidence 999999999999999875 45777778888999998887766555555443 3456677767777665422 11
Q ss_pred ----hHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc
Q 048807 346 ----DEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS 421 (757)
Q Consensus 346 ----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (757)
.-|.+.++++++.+ +. + ....-.......+...|++++|++++..-.. ..-.+-+...-+.-++.+...
T Consensus 167 ~i~l~LA~~m~~~~l~~~--gk--~-~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la--~~l~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKK--GK--I-ESEAEIILYLLILELQGKYQEALEFLAITLA--EKLTSANLYLENKKLDLLKLL 239 (932)
T ss_pred chhHHHHHHHHHHHhccC--Cc--c-chHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HhccccchHHHHHHHHHHHHh
Confidence 23566677776643 11 1 1111222233455678899999999954321 222334455556778888899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----------------HcCChHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 048807 422 GNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMC----------------RHGRINSAVEFFQEVTRKGLCANAV-TYTIL 484 (757)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~----------------~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l 484 (757)
+++.+..++-.++...|.. | |...++.+. ..+..+...+...+......+ ++. ++--+
T Consensus 240 ~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R-gp~LA~lel 314 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR-GPYLARLEL 314 (932)
T ss_pred cChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc-CcHHHHHHH
Confidence 9999999999999988643 2 333222211 112233333333333322111 211 12222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-------HHHHHHHH
Q 048807 485 ITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIV-------CYNHLISG 557 (757)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-------~~~~li~~ 557 (757)
...+-.-|+.+++...|-+-. | +-..|..=+..|...=..+.-..++...... .++.. .+...+..
T Consensus 315 ~kr~~~~gd~ee~~~~y~~kf--g---~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~ 387 (932)
T KOG2053|consen 315 DKRYKLIGDSEEMLSYYFKKF--G---DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLL 387 (932)
T ss_pred HHHhcccCChHHHHHHHHHHh--C---CCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHH
Confidence 223335577777665553321 1 1112222222222222222222222222211 01100 01111111
Q ss_pred HHhcCC-----HHHHHHHHHHH---HhCC------CCCCH---------HHHHHHHHHHHHcCCHH---HHHHHHHHHHh
Q 048807 558 FCKKKM-----LDKAYEVLQEM---EDIG------MTPNS---------VTYNTLISFLSKSGNFS---AARRVLKKMVK 611 (757)
Q Consensus 558 ~~~~g~-----~~~A~~~~~~~---~~~~------~~~~~---------~~~~~li~~~~~~g~~~---~A~~~~~~m~~ 611 (757)
-.-.|. -+.-..++.+. .++| +-|.. -+-+.|++.|.+.++.. +|+-+++.-..
T Consensus 388 ~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt 467 (932)
T KOG2053|consen 388 LRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLT 467 (932)
T ss_pred HHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 111121 12222222221 1222 12222 23467788888888754 56666666655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048807 612 EGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNT 691 (757)
Q Consensus 612 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 691 (757)
.. +.|..+-..+|..|+-.|-+..|.++|+.+.- ..+..|..-|. +..-+...|++..+...++.....--..-..+
T Consensus 468 ~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdI-K~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~ 544 (932)
T KOG2053|consen 468 KS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDI-KNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKET 544 (932)
T ss_pred cC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcch-HHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhh
Confidence 42 34666777889999999999999999998866 56666665443 33455667899999999988775311111223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH---HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhchhcc
Q 048807 692 YNAMFKGLRQKNMLDKAFKLMD---RMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGYAVSA 754 (757)
Q Consensus 692 ~~~l~~~~~~~g~~~~A~~~~~---~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 754 (757)
-. +|..-++.|.+.+-.++.. ++...--.--..+-+..++.++..++.++-...++.+...|
T Consensus 545 ~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 545 PE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMKLPP 609 (932)
T ss_pred HH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccccCc
Confidence 33 3333456777776655432 22211001112445566777888899999999888887544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.8e-06 Score=93.55 Aligned_cols=242 Identities=13% Similarity=0.096 Sum_probs=177.4
Q ss_pred HHHHHhhccCCCc-chHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHH
Q 048807 169 LVYNELDNNLRNT-HVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLV 247 (757)
Q Consensus 169 ~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (757)
.-|+++....||. ..|-.-+.-....+..++|++++++++.+ + +....++-
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t---I---------------------N~REeeEK---- 1496 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT---I---------------------NFREEEEK---- 1496 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh---C---------------------CcchhHHH----
Confidence 4455555555654 67988899999999999999999998764 1 11111111
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 048807 248 SKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEP 327 (757)
Q Consensus 248 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 327 (757)
.-.|.++++.-..-|.-+...++|+++.+.- ..-..|..|...|.+.+.+++|.++|+.|.+. +..
T Consensus 1497 -----------LNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q 1562 (1710)
T KOG1070|consen 1497 -----------LNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQ 1562 (1710)
T ss_pred -----------HHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcc
Confidence 2256677777777788888889999988752 12467888889999999999999999999876 234
Q ss_pred ccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccC--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC
Q 048807 328 SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEP--DVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCM 405 (757)
Q Consensus 328 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 405 (757)
....|...+..+.+..+.+.|.+++.++++.- |. .+....-.+..-.+.|+.+.+..+|+.. ....|
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-------Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgl----l~ayP 1631 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSL-------PKQEHVEFISKFAQLEFKYGDAERGRTLFEGL----LSAYP 1631 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-------chhhhHHHHHHHHHHHhhcCCchhhHHHHHHH----HhhCc
Confidence 66778889999999999899999999988752 22 3555566677777889999999999887 44456
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHH
Q 048807 406 PNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNV--VTLNTLVDGMCRHGRINSAV 463 (757)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~ 463 (757)
.-...|+..|+.-.+.|+.+.+..+|++....++.|-. ..|...+..=-+.|+-..+.
T Consensus 1632 KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1632 KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 67788999999999999999999999999888766532 34455554444445544433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-05 Score=80.21 Aligned_cols=204 Identities=13% Similarity=0.073 Sum_probs=118.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 048807 342 LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVG-KQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK 420 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (757)
.++.++|+.+.+++++.. +.+..+|+.....+...| +++++++.++++. ...+.+..+|+.-...+.+
T Consensus 50 ~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i----~~npknyqaW~~R~~~l~~ 118 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVA----EDNPKNYQIWHHRRWLAEK 118 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHH----HHCCcchHHhHHHHHHHHH
Confidence 356667777777776653 444556666666666666 4577777776663 2334555566655555555
Q ss_pred cCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC--
Q 048807 421 SGNI--EKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNV---NN-- 493 (757)
Q Consensus 421 ~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~-- 493 (757)
.|+. ++++++++++.+...+ |..+|+...-.+...|+++++++.++++++.++. |..+|+.....+.+. |.
T Consensus 119 l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 5542 5566666666665433 5666666666666677777777777777776544 555666555444433 21
Q ss_pred --HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 494 --FQEAIKWFDDMSRAGCSADSVVYFTLISGLCQA----GRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCK 560 (757)
Q Consensus 494 --~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 560 (757)
.++++....+++... +.+...|+.+...+... +...+|...+.+....+ ..+......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 234555555555543 44556666666666552 33445666666655543 2245566666666654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-06 Score=91.21 Aligned_cols=222 Identities=16% Similarity=0.182 Sum_probs=182.9
Q ss_pred ccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048807 366 VEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVT 445 (757)
Q Consensus 366 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 445 (757)
.+|--..-..+...+...|-..+|..+|++.. .|..+|.+|+..|+..+|.++..+..++ +||...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~l 459 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE------------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRL 459 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchh
Confidence 34444455678889999999999999999874 6888999999999999999999988884 678999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 048807 446 LNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQ 525 (757)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 525 (757)
|..+.+......-+++|.++.+..-.. +-..+.......+++.++.+.|+.-.+.+ +.-..+|-.+..+..+
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQ 531 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHH
Confidence 999999888888888898888775443 22222333344789999999999887764 5567789999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048807 526 AGRMNDASLVVSKLKEAGFRPD-IVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARR 604 (757)
Q Consensus 526 ~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 604 (757)
.++++.|.+.|...... .|| ...||.+-.+|.+.++-.+|...+.+..+.+ ..+...|...+....+.|.+++|++
T Consensus 532 lek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred HhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHH
Confidence 99999999999998876 444 5689999999999999999999999999887 5566778888888889999999999
Q ss_pred HHHHHHhC
Q 048807 605 VLKKMVKE 612 (757)
Q Consensus 605 ~~~~m~~~ 612 (757)
.+.++...
T Consensus 609 A~~rll~~ 616 (777)
T KOG1128|consen 609 AYHRLLDL 616 (777)
T ss_pred HHHHHHHh
Confidence 99988753
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.63 E-value=6e-06 Score=80.87 Aligned_cols=188 Identities=13% Similarity=-0.007 Sum_probs=132.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccc---
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPL--EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVV--- 330 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--- 330 (757)
......+..++..+.+.|++++|...|+++.+..+.. ...++..+...+.+.|++++|...|+++.+.. +.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 3456677888899999999999999999998876431 12577888999999999999999999999864 22222
Q ss_pred hHHHHHHHHHhc--------CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 048807 331 TFGTIINRLCKL--------YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQK 402 (757)
Q Consensus 331 ~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 402 (757)
++..+..++.+. |+.++|.+.++++++.. +.+...+..+..... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~~~~----~~------~~~------ 165 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-------PNSEYAPDAKKRMDY----LR------NRL------ 165 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-------CCChhHHHHHHHHHH----HH------HHH------
Confidence 455555666554 78899999999998864 333333332221110 00 000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 403 GCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGV--TPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 403 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
......+...|.+.|++++|+..++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 166 -----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 -----AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 00122456678888888888888888887632 223567888888888889988888888877664
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-06 Score=88.46 Aligned_cols=216 Identities=15% Similarity=0.146 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048807 480 TYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFC 559 (757)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 559 (757)
.-..+...+...|-...|..+|+++. .|...+.+|...|+.++|..+..+..++ +||...|..+++...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33445566666666666666666543 3455566666666666666666666553 556666666666665
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048807 560 KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMK 639 (757)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 639 (757)
...-+++|.++++..... .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+..+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 555566666666554322 11111112223566666666666665542 2244566666666666667777766
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 640 IFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 640 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
.|..... .-+.+...||++-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+-|.+++|++.+.++.+
T Consensus 541 aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 6666654 222233467777777777777777777777766654 33444555555556666777777766666654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.57 E-value=8e-08 Score=60.37 Aligned_cols=32 Identities=31% Similarity=0.732 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 048807 254 GVFPNAVWLTQLITRFCRKGKTDEAWDVLHVL 285 (757)
Q Consensus 254 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 285 (757)
|+.||.++||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777766
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.2e-06 Score=77.29 Aligned_cols=160 Identities=17% Similarity=0.102 Sum_probs=101.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhc
Q 048807 263 TQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKL 342 (757)
Q Consensus 263 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 342 (757)
..+-..+.-.|+-+.+..+........ +.|....+..+....+.|++.+|...|.+..... ++|..+|+.+.-+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445555666666666666666544332 2255556666666777777777777777766654 56667777777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC
Q 048807 343 YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSG 422 (757)
Q Consensus 343 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (757)
|++++|..-|.+.++.. +.+....|.|.-.|.-.|+.+.|..++.... .....|...-..+.......|
T Consensus 148 Gr~~~Ar~ay~qAl~L~-------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~----l~~~ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 148 GRFDEARRAYRQALELA-------PNEPSIANNLGMSLLLRGDLEDAETLLLPAY----LSPAADSRVRQNLALVVGLQG 216 (257)
T ss_pred cChhHHHHHHHHHHHhc-------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHH----hCCCCchHHHHHHHHHHhhcC
Confidence 77777777777776652 4455666666666777777777777776663 222335566666666666777
Q ss_pred CHHHHHHHHHHHH
Q 048807 423 NIEKGLELFHLMK 435 (757)
Q Consensus 423 ~~~~A~~~~~~m~ 435 (757)
++++|.++-..-.
T Consensus 217 ~~~~A~~i~~~e~ 229 (257)
T COG5010 217 DFREAEDIAVQEL 229 (257)
T ss_pred ChHHHHhhccccc
Confidence 7777766655433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-05 Score=78.07 Aligned_cols=187 Identities=11% Similarity=-0.008 Sum_probs=121.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HH
Q 048807 546 PDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNS---VTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTV--VT 620 (757)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~ 620 (757)
.....+..++..+.+.|++++|...|+++.+.. +.+. .++..+..++.+.|++++|...++++++....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345677777888888888888888888887763 2222 45677788888888888888888888875322111 24
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048807 621 YGALIHAFCVN--------GHVDEAMKIFKELSSSSNVSPNT-VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNT 691 (757)
Q Consensus 621 ~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 691 (757)
+..+..++... |+.++|.+.++++.+. .|+. ..+..+..... ... ... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~-------~~~-------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRN-------RLA-------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHH-------HHH-------HH
Confidence 55555556554 6778888888887762 2332 22222211100 000 000 01
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHhhchhcc
Q 048807 692 YNAMFKGLRQKNMLDKAFKLMDRMIEHAC-HP-DYISMEILTEWLSEAGQTEKLKKFVQGYAVSA 754 (757)
Q Consensus 692 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 754 (757)
...+...+.+.|++++|+..+++.++..- .| ....+..++.++.+.|+.++|..+++.+...+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 12456678888999999999999886511 22 23678888889999999999999888876544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.5e-05 Score=72.89 Aligned_cols=159 Identities=17% Similarity=0.106 Sum_probs=96.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 048807 552 NHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVN 631 (757)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 631 (757)
..+-..+...|+-+.+..+........ +.|......++....+.|++.+|...+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445555666666666666655544332 3454555556666666777777777777666542 45666777777777777
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048807 632 GHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKL 711 (757)
Q Consensus 632 g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 711 (757)
|++++|..-|.+..+..+ .+...++.+...|.-.|+.+.|..++......+ .-|...-..+..+....|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L~~--~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAP--NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhcc--CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 777777777766666222 233446666666666677777777776666542 22455555566666666777777666
Q ss_pred HHHH
Q 048807 712 MDRM 715 (757)
Q Consensus 712 ~~~~ 715 (757)
..+-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 5544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.7e-05 Score=84.78 Aligned_cols=221 Identities=13% Similarity=0.109 Sum_probs=122.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCcc------
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSV------ 329 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------ 329 (757)
+.+...+..|+..|...|++++|.++.+...+..+. ....|-.+...+.+.++.+.+.-+ .+...- ..+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-~~~~~~~~ve 103 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLIDSF-SQNLKWAIVE 103 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhhhc-ccccchhHHH
Confidence 456778999999999999999999999988876543 344455555577788887776655 333321 1111
Q ss_pred -------------chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 330 -------------VTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 330 -------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
..+..+..+|-+.|+.++|..+++++++.+ +.|+.+.|.+...|+.. ++++|++++.+.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-------RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 333344444444555555555555555543 34445555555555555 555555554444
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCC
Q 048807 397 RLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK-GLC 475 (757)
Q Consensus 397 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~ 475 (757)
. ..+...+++.++.+++.++....+ .+.+.-.++.+.+... |..
T Consensus 176 V------------------~~~i~~kq~~~~~e~W~k~~~~~~-----------------~d~d~f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 176 I------------------YRFIKKKQYVGIEEIWSKLVHYNS-----------------DDFDFFLRIERKVLGHREFT 220 (906)
T ss_pred H------------------HHHHhhhcchHHHHHHHHHHhcCc-----------------ccchHHHHHHHHHHhhhccc
Confidence 2 113333344444444444444311 1222222222333222 222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 048807 476 ANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLC 524 (757)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 524 (757)
.-..++-.+-..|-+..+++++..+++.+++.. +.|.....-++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 233444555566777777888888888877764 345556666666665
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.4e-05 Score=84.28 Aligned_cols=240 Identities=13% Similarity=0.104 Sum_probs=167.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchH
Q 048807 254 GVFPNAVWLTQLITRFCRKGKTDEA-WDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTF 332 (757)
Q Consensus 254 g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 332 (757)
|...++...+.+=.+...-|..++| .+++.++.+ ++....+-....+++.-.....+. .+.+...+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 89 (694)
T PRK15179 23 GPASGPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQ 89 (694)
T ss_pred CCCCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHH
Confidence 4456677777777777888888777 455555443 222222222233333333333333 45567888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q 048807 333 GTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYN 412 (757)
Q Consensus 333 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 412 (757)
..|.....+.|++++|..+++.+.+.. |.+......++..+.+.+++++|+..+++. ....+.+....+
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~-------Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~----l~~~p~~~~~~~ 158 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRF-------PDSSEAFILMLRGVKRQQGIEAGRAEIELY----FSGGSSSAREIL 158 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhC-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHH----hhcCCCCHHHHH
Confidence 888899999999999999999999864 556778888999999999999999999998 455577788888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048807 413 CLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVN 492 (757)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 492 (757)
.+..++.+.|++++|.++|+++...+ +-+..++..+...+...|+.++|...|++..+.. .+....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------ 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------
Confidence 99999999999999999999999843 2357889999999999999999999999998863 234455554432
Q ss_pred CHHHHHHHHHHHHHcC----CCCCHhhHHHHHHHHHh
Q 048807 493 NFQEAIKWFDDMSRAG----CSADSVVYFTLISGLCQ 525 (757)
Q Consensus 493 ~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~ 525 (757)
++..-...++++.-.+ .+..+.+..-+|.-|..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 3334444555554333 22333344444444443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0041 Score=68.00 Aligned_cols=223 Identities=14% Similarity=0.124 Sum_probs=128.1
Q ss_pred ChhHHHHHHHHhhhCCCCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhH
Q 048807 87 SSSRALSFFNFLQSNLPTEANTSSLSYAYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDY 166 (757)
Q Consensus 87 ~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 166 (757)
...+|++-...+.++.|.. ....++.++ ...+.|..++|..+++.....+ +.|..+...+-.+|.+.|..++
T Consensus 24 qfkkal~~~~kllkk~Pn~----~~a~vLkaL---sl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNA----LYAKVLKAL---SLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHHHHHHHHHHHHHHCCCc----HHHHHHHHH---HHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence 4567777777788777651 112222222 2234566788887777765544 4588899999999999999999
Q ss_pred HHHHHHHhhccCCCcchHHHHHHHHHhcCChhh----HHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccCh--
Q 048807 167 SLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRD----AFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTD-- 240 (757)
Q Consensus 167 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-- 240 (757)
|..+|+++....|+-.....+-.+|+|-+.+.+ |++++... .-+.+.+-++.+-+...-.-.+....
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-------pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-------PKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CcccchHHHHHHHHHHhccCCcccccch
Confidence 999999998766665555666777777766655 45555432 23445555555555432100111110
Q ss_pred --HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 048807 241 --EELVGLVSKFAEHG-VFPNAVWLTQLITRFCRKGKTDEAWDVL-HVLMKFDAPLEAASCNALLNALGREGDFKRMNQL 316 (757)
Q Consensus 241 --~~~~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 316 (757)
.-|....+.+++.+ ...+..-.......+...|++++|++++ ....+.-..-+...-+.-+..+...+++.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 11122333333332 2222222223333445567777777776 3333333333444555566666667777777777
Q ss_pred HHHHHHCC
Q 048807 317 FTEMKEND 324 (757)
Q Consensus 317 ~~~m~~~g 324 (757)
-.++...|
T Consensus 249 ~~~Ll~k~ 256 (932)
T KOG2053|consen 249 SSRLLEKG 256 (932)
T ss_pred HHHHHHhC
Confidence 77776665
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.8e-05 Score=87.12 Aligned_cols=169 Identities=8% Similarity=0.074 Sum_probs=118.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCH
Q 048807 292 LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVV-TFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDV 370 (757)
Q Consensus 292 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 370 (757)
.+...|..|+..|...+++++|.++.++..+. .|+.. .|..+...+.+.++.+++..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh-------------
Confidence 46788999999999999999999999977776 56644 444444566677776666555 3332
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 371 IIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLV 450 (757)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 450 (757)
......++.-...+...+. . ...+...+..++.+|-+.|+.++|..+++++++.. +-|..+.|.+.
T Consensus 92 --------~~~~~~~~~~ve~~~~~i~----~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~A 157 (906)
T PRK14720 92 --------SFSQNLKWAIVEHICDKIL----L-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLA 157 (906)
T ss_pred --------hcccccchhHHHHHHHHHH----h-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 2222333322222333332 1 23345578888889999999999999999999887 34788899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048807 451 DGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRA 507 (757)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (757)
..|... ++++|.+++.+++.. |...+++.++..++.++...
T Consensus 158 Y~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 158 TSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 999888 999999888887664 55566777777777777665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.2e-07 Score=58.36 Aligned_cols=31 Identities=45% Similarity=0.831 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 650 VSPNTVIYNILIDSLCKNNQVELALSLMEEM 680 (757)
Q Consensus 650 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 680 (757)
+.||..+|++||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.4e-05 Score=84.26 Aligned_cols=171 Identities=10% Similarity=0.058 Sum_probs=136.0
Q ss_pred HHHHHcCChhHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 267 TRFCRKGKTDEAWDVLHVLMK--FDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
....+.|.+..+.+-+-++.. ++.+.++..+-.|.....+.|.+++|..+++...+.. +.+...+..++..+.+.++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~ 135 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQG 135 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhcc
Confidence 344455555554444433321 2334478999999999999999999999999999974 3346677888899999999
Q ss_pred hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH
Q 048807 345 ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNI 424 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (757)
+++|+...++.+..+ +.+......+...+.+.|++++|.++|+++. . ..+.+..++..+...+...|+.
T Consensus 136 ~eeA~~~~~~~l~~~-------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~---~-~~p~~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 136 IEAGRAEIELYFSGG-------SSSAREILLEAKSWDEIGQSEQADACFERLS---R-QHPEFENGYVGWAQSLTRRGAL 204 (694)
T ss_pred HHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHH---h-cCCCcHHHHHHHHHHHHHcCCH
Confidence 999999999999875 6678888999999999999999999999994 3 4455688999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 425 EKGLELFHLMKQEGVTPNVVTLNTLV 450 (757)
Q Consensus 425 ~~A~~~~~~m~~~g~~p~~~~~~~li 450 (757)
++|...|+...+. ..|....|+..+
T Consensus 205 ~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 205 WRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 9999999999876 234455555544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.3e-06 Score=77.80 Aligned_cols=116 Identities=9% Similarity=0.114 Sum_probs=60.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHH-HhcCC--hhHH
Q 048807 272 KGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRL-CKLYR--ADEA 348 (757)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~--~~~A 348 (757)
.++.+++...++..++.++. |...|..+...|...|++++|...|++..+.+ +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 34445555555555554433 55555555555555555555555555555543 22344444444432 34444 3555
Q ss_pred HHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 349 LEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
.++++++++.+ +.+..++..+...+.+.|++++|...++++
T Consensus 130 ~~~l~~al~~d-------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 130 REMIDKALALD-------ANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhC-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555543 344555555555555555555555555555
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.6e-06 Score=72.52 Aligned_cols=109 Identities=11% Similarity=-0.100 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
.+..+...+...|++++|...|+.+...++. +...|..+..++.+.|++++|...|++..+.+ +.+...+..+..++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 4556788899999999999999999998765 89999999999999999999999999999875 567888999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLID 378 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 378 (757)
..|+.++|+..|+..++.. +.+...|.....
T Consensus 104 ~~g~~~eAi~~~~~Al~~~-------p~~~~~~~~~~~ 134 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS-------YADASWSEIRQN 134 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHH
Confidence 9999999999999999864 445555544433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-05 Score=72.80 Aligned_cols=119 Identities=9% Similarity=0.088 Sum_probs=74.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHH-HHcCC
Q 048807 307 EGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGL-CKVGK 385 (757)
Q Consensus 307 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~ 385 (757)
.++.+++...+++.++.+ +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-------P~~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-------GENAELYAALATVLYYQAGQ 123 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCC
Confidence 455566666666666654 4456666666666667777777777777766654 44566666666643 45555
Q ss_pred --HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 386 --QEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 386 --~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
.++|.+++++.. ...+.+..++..+...+.+.|++++|+..|+++.+.
T Consensus 124 ~~~~~A~~~l~~al----~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 124 HMTPQTREMIDKAL----ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred CCcHHHHHHHHHHH----HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 366777666663 333445666666666666677777777777666665
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00011 Score=74.66 Aligned_cols=147 Identities=16% Similarity=0.171 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHH
Q 048807 296 SCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNT 375 (757)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (757)
.+-...-.+...|++++|++.++.++..- +.|.+.+......+.+.++.++|.+.+++++... +.....+-.
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-------P~~~~l~~~ 379 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-------PNSPLLQLN 379 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCccHHHHH
Confidence 33333444556677777777777777652 3344445555567777777777777777777653 233666677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 376 LIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR 455 (757)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (757)
+..+|.+.|++.+|..+++.. ....+.|...|..|..+|...|+..++.....+... -
T Consensus 380 ~a~all~~g~~~eai~~L~~~----~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~ 437 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRY----LFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------L 437 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHH----hhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------h
Confidence 777777777777777777776 344566777777777777777777777776666543 2
Q ss_pred cCChHHHHHHHHHHHHC
Q 048807 456 HGRINSAVEFFQEVTRK 472 (757)
Q Consensus 456 ~g~~~~A~~~~~~~~~~ 472 (757)
.|++++|...+....+.
T Consensus 438 ~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 438 AGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 46667776666666554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.9e-05 Score=70.03 Aligned_cols=106 Identities=16% Similarity=0.055 Sum_probs=70.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 048807 280 DVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
.+|++..+.+ +..+......+.+.|++++|...|++.+... +.+...|..+...+.+.|++++|+..|+++++.+
T Consensus 14 ~~~~~al~~~----p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVD----PETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4455555543 2234455666677777777777777777664 4456666777777777777777777777777654
Q ss_pred CCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 360 ETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 360 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
+.+..++..+..++.+.|++++|...|+...
T Consensus 89 -------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 89 -------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred -------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566777777777777777777777777763
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00056 Score=63.97 Aligned_cols=157 Identities=20% Similarity=0.156 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAF 628 (757)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 628 (757)
.....-...|+..|++++|++...... +....-.=+..+.+..+.+-|.+.+++|.+- .+..|.+.|..++
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~aw 179 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAW 179 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHH
Confidence 333334455667777777776665521 2222222234455666677777777777763 3555666666665
Q ss_pred Hhc----CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 629 CVN----GHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNM 704 (757)
Q Consensus 629 ~~~----g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 704 (757)
.+. +.+.+|.-+|+++.+ ..+|+..+.+....++...|++++|..++++.+++. ..++.+...++.+-...|+
T Consensus 180 v~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence 442 456777777777766 455777777777777777777777777777777653 3456666666666566666
Q ss_pred HHHHH-HHHHHHHH
Q 048807 705 LDKAF-KLMDRMIE 717 (757)
Q Consensus 705 ~~~A~-~~~~~~~~ 717 (757)
-.++. +.+.++..
T Consensus 257 d~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 257 DAEVTERNLSQLKL 270 (299)
T ss_pred ChHHHHHHHHHHHh
Confidence 54443 45555543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00026 Score=66.08 Aligned_cols=49 Identities=14% Similarity=0.337 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 563 MLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE 612 (757)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (757)
++.+|.-+|++|.++- +|+..+.+....++...|++++|..+++..+.+
T Consensus 188 k~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3444555555554431 444444444444444555555555555555444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00021 Score=72.61 Aligned_cols=138 Identities=19% Similarity=0.164 Sum_probs=90.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 048807 558 FCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPT-VVTYGALIHAFCVNGHVDE 636 (757)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 636 (757)
+...|++++|+..++.+.... |.|..-+....+.+.+.++.++|.+.+++++.. .|+ ......+..+|.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 345567777777777766552 344455555566677777777777777777764 344 4555566777777777777
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 637 AMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 637 A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
|+++++.... ..+.|...|..|..+|...|+..+|..-..+ .+...|++++|+..+....
T Consensus 393 ai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 393 AIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHH
Confidence 7777777665 4455666777777777777776666544333 3455677777777777776
Q ss_pred Hc
Q 048807 717 EH 718 (757)
Q Consensus 717 ~~ 718 (757)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 54
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0011 Score=61.55 Aligned_cols=187 Identities=18% Similarity=0.210 Sum_probs=119.6
Q ss_pred CCHHHHHHHHHHHHhC---C-CCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048807 422 GNIEKGLELFHLMKQE---G-VTPNVVT-LNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQE 496 (757)
Q Consensus 422 g~~~~A~~~~~~m~~~---g-~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 496 (757)
.+.++..+++..+... | ..++..+ |..++-+....|+.+.|...++++...- +-+..+-..-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4456666666655532 2 3444433 4455556667777888888777776653 2222222222233445677888
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 497 AIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMED 576 (757)
Q Consensus 497 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (757)
|+++|+.+++.+ +.|.+++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.+++++-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 888888877765 666677776666777777777777777776665 455778888888888888888888888888776
Q ss_pred CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhC
Q 048807 577 IGMTPNSVTYNTLISFLSKSG---NFSAARRVLKKMVKE 612 (757)
Q Consensus 577 ~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 612 (757)
.. |.+...+..+...+.-.| +.+-|.+.|.+.++.
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 53 445555555555543333 566777777777774
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.8e-05 Score=66.49 Aligned_cols=101 Identities=14% Similarity=0.134 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTII 336 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 336 (757)
.+......++..+.+.|++++|.+.|+.+...++. +...|..+...+.+.|++++|..++++..+.+ +.+...+..+.
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 35566778889999999999999999999987754 88999999999999999999999999998875 55677788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 048807 337 NRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
..+...|++++|...|+..++.+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998854
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.002 Score=59.96 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=73.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048807 557 GFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDE 636 (757)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 636 (757)
+....|+.+.|...++++...- +.+..+-..-...+-..|++++|+++++.+++.+ +.|.+++..-+...-..|+.-+
T Consensus 61 AAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHH
Confidence 3344455555555555554432 2222221111222334455555555555555543 2244444444444445555555
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 048807 637 AMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN---MLDKAFKLMD 713 (757)
Q Consensus 637 A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~ 713 (757)
|++-+....+ .+..|...|.-+...|...|++++|.-.+++++-.. +-++..+..+.+.+.-.| +.+-|.++|.
T Consensus 139 aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 139 AIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred HHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555554 233455555555555555555555555555555421 223334444444443333 2344555555
Q ss_pred HHHH
Q 048807 714 RMIE 717 (757)
Q Consensus 714 ~~~~ 717 (757)
+.++
T Consensus 216 ~alk 219 (289)
T KOG3060|consen 216 RALK 219 (289)
T ss_pred HHHH
Confidence 5554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.5e-05 Score=65.10 Aligned_cols=104 Identities=19% Similarity=0.125 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 618 VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFK 697 (757)
Q Consensus 618 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 697 (757)
......+...+...|++++|...++.+.. . .+.+...+..+...+.+.|++++|...+++..+.+ +.+...+..+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAA-Y-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 34455556666667777777777776655 1 22355566667777777777777777777766542 335566666667
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048807 698 GLRQKNMLDKAFKLMDRMIEHACHPDYIS 726 (757)
Q Consensus 698 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 726 (757)
++...|++++|...+++.++. .|+...
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 777777777777777777653 454433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00011 Score=75.56 Aligned_cols=122 Identities=17% Similarity=0.202 Sum_probs=60.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 624 LIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN 703 (757)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 703 (757)
|+..+...++++.|+.+|+++.+. .|+. ...++..+...++-.+|.+++++.+.. .+-+...+..-...|.+.|
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 333444445555555555555541 1332 223444444455555555555555542 1223444444445555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHhhchhc
Q 048807 704 MLDKAFKLMDRMIEHACHPDY-ISMEILTEWLSEAGQTEKLKKFVQGYAVS 753 (757)
Q Consensus 704 ~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 753 (757)
+++.|+++.+++.+ +.|+. .+|..|+.+|...|++++|.-.++.+|..
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 55555555555554 24433 45555555555555555555555555543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.033 Score=59.20 Aligned_cols=363 Identities=12% Similarity=0.080 Sum_probs=179.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCC--------ccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 048807 292 LEAASCNALLNALGREGDFKRMNQLFTEMKEN-DIEP--------SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETA 362 (757)
Q Consensus 292 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 362 (757)
|.+..|..+...-...-+++.|...|-+...- |++. +...-.+=+.+ --|++++|.+++-.+-.++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh---
Confidence 56677777776666666666666666544331 1110 00000111111 2477888888777664432
Q ss_pred cccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 048807 363 EISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN---AVTYNCLINGFCKSGNIEKGLELFHLMKQEGV 439 (757)
Q Consensus 363 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 439 (757)
..|..+.+.|++-...++++.- .+...| ...|+.+...+.....+++|.+.|..-..
T Consensus 765 ------------LAielr~klgDwfrV~qL~r~g-----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--- 824 (1189)
T KOG2041|consen 765 ------------LAIELRKKLGDWFRVYQLIRNG-----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--- 824 (1189)
T ss_pred ------------hhHHHHHhhhhHHHHHHHHHcc-----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 2355666777776666655432 111112 35677777777777777777777764321
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 048807 440 TPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTL 519 (757)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 519 (757)
....+.++.+..++++-..+-..+ +.+....-.+..++...|.-++|.+.|-+-.. | ...
T Consensus 825 ------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaA 884 (1189)
T KOG2041|consen 825 ------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAA 884 (1189)
T ss_pred ------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHH
Confidence 122344555555555544433332 22445556677777777777777766643211 1 123
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 048807 520 ISGLCQAGRMNDASLVVSKLKEAGFRPDIVCY--------------NHLISGFCKKKMLDKAYEVLQEMEDI----GMTP 581 (757)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~ 581 (757)
+..|...++|.+|.++-+...- |.+.+. ...|..+.+.|+.-.|.+++.+|.+. +.++
T Consensus 885 v~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~ 960 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPY 960 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCH
Confidence 4556666777777766554321 222221 12234455566666666666665432 2222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 048807 582 NSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILI 661 (757)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li 661 (757)
-..--..++.++. ..+..++.+-.++....|...+... +...|-..++-++.+..-. | ...+.|..|.
T Consensus 961 lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g--AEAyHFmilA 1028 (1189)
T KOG2041|consen 961 LRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G--AEAYHFMILA 1028 (1189)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h--HHHHHHHHHH
Confidence 2111111111111 1223334444444444443222211 1222333333333332221 1 2344555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 662 DSLCKNNQVELALSLMEEMKV-KEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRM 715 (757)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (757)
+--...|.++.|+..--.+.+ ..+-|....|..+.-+-+....+...-+.|-++
T Consensus 1029 Qrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1029 QRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 666677888888876555554 235566677776665555544444444434333
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.028 Score=56.96 Aligned_cols=456 Identities=12% Similarity=0.135 Sum_probs=238.6
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHH--Hh
Q 048807 269 FCRKGKTDEAWDVLHVLMKFDAPL-----EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRL--CK 341 (757)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~--~~ 341 (757)
+-+++++.+|.++|.++.+.--.. ..+..+.++++|.. .+.+.....+.+..+. .| ...|..+..++ .+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 457899999999999887642211 13455677788876 4566666666666554 23 44566666544 57
Q ss_pred cCChhHHHHHHHHHHhCCCCCc-c-------cccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC-CCCCCHHHHH
Q 048807 342 LYRADEALEVFEKMIAGKETAE-I-------SVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQK-GCMPNAVTYN 412 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 412 (757)
.+.+.+|.+.+......-.... . ..-+|...-+..++++...|++.+++.+++++..+... ...-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 8889999988877655410000 0 01123344466788899999999999999998644222 2345788888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048807 413 CLINGFCKSGNIEKGLELFHLMKQE---GVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFC 489 (757)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 489 (757)
.++-.+.++ .|-++.+. .+-|+ |--++-.|.+.=+.-++. .-..+-|.......++....
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~~------~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQR------PYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhhc------hHHhhCcHHHHHHHHHHHHH
Confidence 866666543 33333322 12222 333444443321111110 00011222222222222222
Q ss_pred hcC--CHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcC
Q 048807 490 NVN--NFQEAIKWFDDMSRAGCSADS-VVYFTLISGLCQAGRMNDASLVVSKLKEAGFR----PDIVCYNHLISGFCKKK 562 (757)
Q Consensus 490 ~~g--~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g 562 (757)
-.. +..--.++++...+.-+.|+. .....+...+.+ +.+++..+-+.+....+. -=..++..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111112222222222223332 222333333333 334444443333322111 02345666777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCC-HHHH-HHHHHHHH
Q 048807 563 MLDKAYEVLQEMEDIGMTPNSVTY-------NTLISFLS----KSGNFSAARRVLKKMVKEGLVPT-VVTY-GALIHAFC 629 (757)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~~~~~~~-------~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~-~~~~-~~li~~~~ 629 (757)
+...|.+.+.-+.-.+ |+...- ..+.+..+ ...+...=+.+|+.....++..- .+.| ..-..-+-
T Consensus 313 ~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 313 QTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLW 390 (549)
T ss_pred hHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 7777777776665542 322211 11222222 11123344455555555432211 1111 11122344
Q ss_pred hcCC-HHHHHHHHHHhhhcCCCCCCHHHHHHH----HHHHHh---cCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHH
Q 048807 630 VNGH-VDEAMKIFKELSSSSNVSPNTVIYNIL----IDSLCK---NNQVELALSLMEEMKVKEVRP----NTNTYNAMFK 697 (757)
Q Consensus 630 ~~g~-~~~A~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~---~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l~~ 697 (757)
+.|. -++|+++++.+.+-. +-|...-|.. =..|.+ ...+.+-+++-+-+.+.|+.| +...-|.|.+
T Consensus 391 ~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred hcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 5555 788888888887721 1233222222 122322 223444444444455677777 3445566666
Q ss_pred H--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhchhc
Q 048807 698 G--LRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGYAVS 753 (757)
Q Consensus 698 ~--~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 753 (757)
+ +..+|++.++.-+-....+ +.|++.+|.-++-++....+++||.++++.+|..
T Consensus 469 AEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n 524 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPN 524 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCc
Confidence 5 4678999998877666654 7898899998888888888999999999998853
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.022 Score=60.48 Aligned_cols=369 Identities=16% Similarity=0.152 Sum_probs=201.7
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCC--------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKF-DAP--------LEAASCNALLNALGREGDFKRMNQLFTEMKENDIE 326 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 326 (757)
.|.+..|..|...-.+.-.++-|+..|-+.... |++ .+...-.+=|.+| -|+|++|.++|-+|-++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 578889999988888888888888888765442 111 0011111122222 4899999999999887642
Q ss_pred CccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC
Q 048807 327 PSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP 406 (757)
Q Consensus 327 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 406 (757)
.|..+.+.|++-...++++.--... .-..-..+|+.+...+.....+++|.+.+....
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~d~-----dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~--------- 823 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGSDD-----DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG--------- 823 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCCCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 3566777888877766655321110 011224678899999999999999999888763
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048807 407 NAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILIT 486 (757)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 486 (757)
+ -...+.++.+..++++-..+-+.+ +-+....-.+.+++.+.|.-++|.+.|-+- +.+ . +.+.
T Consensus 824 ~---~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p-k-----aAv~ 886 (1189)
T KOG2041|consen 824 D---TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP-K-----AAVH 886 (1189)
T ss_pred c---hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc-H-----HHHH
Confidence 1 123566666666666555444443 335666777888888888888887766432 211 1 2345
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhH--------------HHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCH
Q 048807 487 AFCNVNNFQEAIKWFDDMSRAGCSADSVVY--------------FTLISGLCQAGRMNDASLVVSKLKEA----GFRPDI 548 (757)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~~~ 548 (757)
.|...+++.+|.++-+...- |.+.+. .--|..+.+.|++-+|-+++.+|.+. +.++-.
T Consensus 887 tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr 962 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLR 962 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHH
Confidence 56666777777766554321 111111 11234455667776777777666543 222211
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAF 628 (757)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 628 (757)
.--..++.++. ..+..++.+-.++...+|...|... +...|-..++-.+.+..-. | .....|..|..-.
T Consensus 963 ~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr-g--AEAyHFmilAQrq 1031 (1189)
T KOG2041|consen 963 LKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR-G--AEAYHFMILAQRQ 1031 (1189)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh-h--HHHHHHHHHHHHH
Confidence 11111111111 1223344444444444443222111 1222333333333332221 1 2334455555555
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 629 CVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMK 681 (757)
Q Consensus 629 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 681 (757)
...|.++.|++.--.+..-..+-|...+|..+.-+-+....+.-.-+.|-++.
T Consensus 1032 l~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1032 LFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 66788888877654444323345666677766655555544444444444443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00062 Score=60.60 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=35.8
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 626 HAFCVNGHVDEAMKIFKELSSSSNVSPN--TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN 703 (757)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 703 (757)
..+...|++++|...|+.+.. ....|. ......|...+...|++++|+..++..... ......+...++++.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCC
Confidence 334444444444444444444 111111 112223344444445555555554443221 122333444444555555
Q ss_pred CHHHHHHHHHH
Q 048807 704 MLDKAFKLMDR 714 (757)
Q Consensus 704 ~~~~A~~~~~~ 714 (757)
++++|...|++
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 55555555444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00025 Score=73.08 Aligned_cols=128 Identities=17% Similarity=0.139 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+.....+|+..+...++++.|+++|+++.+.+ |+ ....++..+...++-.+|.+++.+.+... +.+...+..-..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455667788888899999999999999875 33 44557888888899999999999999763 445556666667
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
.|.+.++.+.|+++.+++.... |.+..+|..|..+|.+.|++++|+..+..+.
T Consensus 243 fLl~k~~~~lAL~iAk~av~ls-------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELS-------PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7889999999999999999864 5667799999999999999999999998874
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00054 Score=60.95 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=35.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcC
Q 048807 591 SFLSKSGNFSAARRVLKKMVKEGLVPT--VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNN 668 (757)
Q Consensus 591 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 668 (757)
..+...|++++|...|+........|+ ......|...+...|++++|+..++.... -......+...++.|.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD---EAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC---cchHHHHHHHHHHHHHHCC
Confidence 344444555555555555444331111 11222334444444555555554443222 1112223444444455555
Q ss_pred CHHHHHHHHHH
Q 048807 669 QVELALSLMEE 679 (757)
Q Consensus 669 ~~~~A~~~~~~ 679 (757)
++++|...|++
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 55555544443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.9e-05 Score=50.41 Aligned_cols=33 Identities=36% Similarity=0.629 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCc
Q 048807 296 SCNALLNALGREGDFKRMNQLFTEMKENDIEPS 328 (757)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 328 (757)
+||++|.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.011 Score=59.05 Aligned_cols=273 Identities=13% Similarity=0.053 Sum_probs=132.8
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING 417 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (757)
.+.+..++.+|+..+..+++.. +.++.-|..-+..+...|++++|.--.+.-. .-.+.......-.-.+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~----r~kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-------PDNASYYSNRAATLMMLGRFEEALGDARQSV----RLKDGFSKGQLREGQC 126 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-------ccchhhhchhHHHHHHHHhHhhcccchhhhe----ecCCCccccccchhhh
Confidence 4556667777888888887763 5556666666777777788877776654432 1111122233334444
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHHhcCCHH
Q 048807 418 FCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGL-CANAVTYTIL-ITAFCNVNNFQ 495 (757)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l-i~~~~~~g~~~ 495 (757)
+...++..+|.+.++ +...+ ....|+..++.+..... .|....|-.| ..++...|+.+
T Consensus 127 ~~a~~~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~ 186 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYD 186 (486)
T ss_pred hhhhHHHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccch
Confidence 444555555555444 11111 01111111222111111 1222233322 23444556666
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-------------HHHHHHHHHhcC
Q 048807 496 EAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVC-------------YNHLISGFCKKK 562 (757)
Q Consensus 496 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-------------~~~li~~~~~~g 562 (757)
+|.++--..++.+ ..+......-..++.-.++.+.|...|++.+..+ |+... +..-.+-..+.|
T Consensus 187 ~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 187 EAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred hHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 6665555555442 1122221111223334555666666666555442 22211 112223345667
Q ss_pred CHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 048807 563 MLDKAYEVLQEMEDIG---MTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPT-VVTYGALIHAFCVNGHVDEAM 638 (757)
Q Consensus 563 ~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 638 (757)
++..|.+.|.+.+..+ ..++...|........+.|+.++|+.--+..++. .+. ...|..-..++...+++++|.
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766542 2233444555555666677777777766666653 111 112222334445556677777
Q ss_pred HHHHHhhh
Q 048807 639 KIFKELSS 646 (757)
Q Consensus 639 ~~~~~~~~ 646 (757)
+-+++..+
T Consensus 342 ~d~~~a~q 349 (486)
T KOG0550|consen 342 EDYEKAMQ 349 (486)
T ss_pred HHHHHHHh
Confidence 77766655
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00045 Score=60.24 Aligned_cols=99 Identities=7% Similarity=-0.073 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+....-.+...+...|++++|..+|+.....++. +...|..|..++...|++++|+..|......+ +.|...+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3445556777888999999999999999998876 88999999999999999999999999999987 467889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 048807 338 RLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~ 358 (757)
++...|+.+.|++.|+.++..
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998864
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0084 Score=53.00 Aligned_cols=144 Identities=13% Similarity=0.070 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC--CCCCCHHHH
Q 048807 580 TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSS--NVSPNTVIY 657 (757)
Q Consensus 580 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~p~~~~~ 657 (757)
.|+...-..|..+....|+..+|...|++...--+-.|......+.++....+++.+|...++++.+.. +-.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 556666667778888888888888888888765445577777778888888888888888888877621 11233 34
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048807 658 NILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISME 728 (757)
Q Consensus 658 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 728 (757)
..+...|...|+..+|..-|+...+. -|+...-......+.+.|+.++|..-+....+. +.-+..+|.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~-~~r~~~H~r 231 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDT-AKRSRPHYR 231 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HHhcchhHH
Confidence 56677788888888888888888874 455554444455567778777776655555432 233444444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.6e-05 Score=48.58 Aligned_cols=33 Identities=48% Similarity=0.813 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVKEVRPN 688 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 688 (757)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00045 Score=55.91 Aligned_cols=96 Identities=22% Similarity=0.248 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
++..++..+...|++++|...++++.+..+. +...+..+...+...|++++|.+.|++..... +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 3556778888999999999999999887644 55788889999999999999999999998875 445567888888999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 048807 341 KLYRADEALEVFEKMIAG 358 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~ 358 (757)
..|+.++|...+....+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999988764
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0061 Score=60.79 Aligned_cols=330 Identities=12% Similarity=0.010 Sum_probs=184.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 411 YNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCN 490 (757)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 490 (757)
.......+.+..++.+|+..+...++.... +..-|..-+..+...|++++|.--.++-.+.... ....+.-.-.++..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhh
Confidence 344567788888999999999999987543 5666777777888888998887766665554221 22344555666666
Q ss_pred cCCHHHHHHHHHHHHHc----------------CCCCCHhhHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048807 491 VNNFQEAIKWFDDMSRA----------------GCSADSVVYFTLI-SGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNH 553 (757)
Q Consensus 491 ~g~~~~A~~~~~~m~~~----------------~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 553 (757)
.++..+|...++.-... .-+|.-..|..+- .++.-.|++++|...-...++.... +......
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~v 208 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYV 208 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHh
Confidence 77777777766532100 0001112222222 2345567888887777666665311 2222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHhC---CCCCC
Q 048807 554 LISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTL-------------ISFLSKSGNFSAARRVLKKMVKE---GLVPT 617 (757)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------------i~~~~~~g~~~~A~~~~~~m~~~---~~~p~ 617 (757)
-..++...++.+.|...|++.+..+ |+...-..+ ..-..+.|++..|.+.|.+.+.. +..|+
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred cccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 2334445777888888888887763 444322111 22234677888888888887764 23345
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 048807 618 VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT-VIYNILIDSLCKNNQVELALSLMEEMKVKEVRP-NTNTYNAM 695 (757)
Q Consensus 618 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l 695 (757)
...|........+.|+.++|+.-.++..+ +.+.. ..|..-..++...++|++|.+-|++..+..-.+ ...++.-.
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A 363 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREA 363 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 55666666677778888888887777665 22211 123333344555677888888888777642222 22344444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHH-hcCCHHHHHHHHhh
Q 048807 696 FKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILT--EWLS-EAGQTEKLKKFVQG 749 (757)
Q Consensus 696 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~--~~~~-~~g~~~~A~~~~~~ 749 (757)
..++-++.+ ..-.+++--.......|....|.-+. .... ..|.-.||+.-+++
T Consensus 364 ~~aLkkSkR-kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFke 419 (486)
T KOG0550|consen 364 QLALKKSKR-KDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKE 419 (486)
T ss_pred HHHHHHhhh-hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHH
Confidence 444433322 11222222222222345555565332 2222 23555666665554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.70 E-value=6e-05 Score=47.68 Aligned_cols=33 Identities=45% Similarity=0.643 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 048807 295 ASCNALLNALGREGDFKRMNQLFTEMKENDIEP 327 (757)
Q Consensus 295 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 327 (757)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0011 Score=56.58 Aligned_cols=99 Identities=11% Similarity=0.054 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--CccchHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPL--EAASCNALLNALGREGDFKRMNQLFTEMKENDIE--PSVVTFGTII 336 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li 336 (757)
++..++..+.+.|++++|.+.|..+.+..+.. ....+..+...+.+.|++++|.+.|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 55668888999999999999999998865431 2457778999999999999999999999876311 1245677788
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 048807 337 NRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
..+.+.|+.++|...++++++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 88999999999999999999864
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0011 Score=66.30 Aligned_cols=131 Identities=12% Similarity=0.099 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 295 ASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK-LYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 295 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
.+|..++....+.+..+.|.++|.+..+.+ .-+...|......-.. .++.+.|.++|+..++. ++.+...|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-------f~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-------FPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-------HTT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------CCCCHHHH
Confidence 356666666666666777777777766432 2223334333333223 34555577777777665 46666777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNA---VTYNCLINGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
...++.+.+.|+.+.|..+|++. .....++. ..|...+..-.+.|+++.+.++.+++.+.
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~----i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERA----ISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH----CCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHH----HHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777777776 22232222 46777777777777777777777766663
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=8.6e-05 Score=46.94 Aligned_cols=32 Identities=38% Similarity=0.617 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVKEVRP 687 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 687 (757)
+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55666666666666666666666666655554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.093 Score=53.17 Aligned_cols=146 Identities=21% Similarity=0.313 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHH-HHHH
Q 048807 583 SVTYNTLISFLSKSGNFSAARRVLKKMVKEG-LVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVI-YNIL 660 (757)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~l 660 (757)
..+|..++..-.+..-++.|..+|-++.+.| ..+++..+++++.-++ .|+...|.++|+--... . ||... -+-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f-~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--F-PDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--C-CCchHHHHHH
Confidence 3566777777777777888888888888887 5677888888887654 57788888888765552 2 34333 3455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048807 661 IDSLCKNNQVELALSLMEEMKVKEVRPN--TNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLS 735 (757)
Q Consensus 661 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 735 (757)
+.-+...++-+.|..+|+..+.. +..+ ..+|..+++--..-|+...+..+=++|.+. -|-..+.....+.+.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 66667778888888888866543 2233 467888888777888888888888888763 454433333434333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0024 Score=54.50 Aligned_cols=99 Identities=12% Similarity=0.048 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHH
Q 048807 620 TYGALIHAFCVNGHVDEAMKIFKELSSSSNVSP-NTVIYNILIDSLCKNNQVELALSLMEEMKVKEV--RPNTNTYNAMF 696 (757)
Q Consensus 620 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~l~ 696 (757)
++..++..+.+.|++++|.+.|..+.+...-.+ ....+..++.++.+.|++++|...|+++....- +.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566666777777777776665211111 123455566777777777777777777665310 11134566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 048807 697 KGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
.++.+.|+.++|.+.++++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6677777777777777777664
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.012 Score=58.99 Aligned_cols=129 Identities=14% Similarity=0.172 Sum_probs=59.1
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----CHH-HHH
Q 048807 377 IDGLCKV-GKQEEALGLIEQMRLRLQKGCMP--NAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTP-----NVV-TLN 447 (757)
Q Consensus 377 i~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-~~~ 447 (757)
...|... |++++|.+.|++..........+ -..++..++..+.+.|++++|.++|++....-... +.. .+.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 3344444 66666666666653221111111 12344556666777777777777777666542211 111 122
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 048807 448 TLVDGMCRHGRINSAVEFFQEVTRKG--LCA--NAVTYTILITAFCN--VNNFQEAIKWFDDMS 505 (757)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 505 (757)
..+-++...|++..|.+.+++..... +.. .......|+.++-. ...+.+++.-|+.+.
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 23334455666666766666665442 111 12233444444432 123555555555444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0011 Score=53.48 Aligned_cols=93 Identities=30% Similarity=0.267 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q 048807 333 GTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYN 412 (757)
Q Consensus 333 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 412 (757)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++... ...+.+..++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~ 72 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKAL----ELDPDNAKAYY 72 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCcchhHHH
Confidence 334444555555555555555555432 2233445555555555555555555555542 11223334455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 413 CLINGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~ 436 (757)
.+...+...|+.++|...+....+
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHc
Confidence 555555555555555555555443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0017 Score=67.22 Aligned_cols=93 Identities=15% Similarity=-0.009 Sum_probs=82.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
....+...|++++|++.|+++++.++. +...|..+..+|.+.|++++|+..++++++.+ +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 355677889999999999999998765 78899999999999999999999999999875 4467788888999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 048807 345 ADEALEVFEKMIAGK 359 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~ 359 (757)
+++|+..|++.++.+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999864
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0026 Score=58.55 Aligned_cols=86 Identities=10% Similarity=0.021 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE--AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
....+..+...|.+.|++++|...|+++.+.++.+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 455678888899999999999999999987654432 4688999999999999999999999999864 3345667777
Q ss_pred HHHHHhcCC
Q 048807 336 INRLCKLYR 344 (757)
Q Consensus 336 i~~~~~~g~ 344 (757)
...+...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 777877776
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0054 Score=66.44 Aligned_cols=70 Identities=14% Similarity=0.007 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 048807 653 NTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYIS 726 (757)
Q Consensus 653 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 726 (757)
+...|..+.-.....|++++|...++++++. .|+...|..++.++...|+.++|.+.++++.. +.|...+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence 4456666665666667777777777777774 46677777777777777777777777777765 3555444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.023 Score=56.97 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 551 YNHLISGFCKKKMLDKAYEVLQEMEDIGMTPN-----SV-TYNTLISFLSKSGNFSAARRVLKKMVK 611 (757)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (757)
+..++..+.+.|++++|.++|+++.......+ .. .+...+-.+...||+..|...+++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444555556666666666665544321111 10 111222233445566666666665554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0025 Score=66.02 Aligned_cols=86 Identities=9% Similarity=0.014 Sum_probs=39.3
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 629 CVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKA 708 (757)
Q Consensus 629 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 708 (757)
...|++++|+..|+++.+ ..+.+...|..+..+|.+.|++++|+..+++++... +.+...|..++.+|...|++++|
T Consensus 13 ~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 13 FVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 344445555555544444 111233344444444555555555555555554431 12333444444455555555555
Q ss_pred HHHHHHHHH
Q 048807 709 FKLMDRMIE 717 (757)
Q Consensus 709 ~~~~~~~~~ 717 (757)
+..|+++++
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 555555543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=63.38 Aligned_cols=129 Identities=18% Similarity=0.164 Sum_probs=88.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHhcCC
Q 048807 591 SFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT-VIYNILIDSLCKNNQ 669 (757)
Q Consensus 591 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~ 669 (757)
.-..+.+++++|+..|.++++.. +-|.+-|..-..+|++.|.++.|++-.+.... +.|+. .+|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCc
Confidence 34567788888888888888853 23666777778888888888888888887776 44543 478888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCHH---HHHHHHHHHHHcCCCCCHH
Q 048807 670 VELALSLMEEMKVKEVRPNTNTYNAMFKGL-RQKNMLD---KAFKLMDRMIEHACHPDYI 725 (757)
Q Consensus 670 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~---~A~~~~~~~~~~g~~p~~~ 725 (757)
+++|++.|++.++ +.|+..+|..=+... .+.+... .+..-++-....|..||..
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 8888888888887 578777775544433 2223322 3334444443345556653
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0013 Score=65.72 Aligned_cols=129 Identities=17% Similarity=0.121 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGR-EGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
.+|..+++..-+.+..+.|..+|.++.+.+. .+..+|......-.+ .++.+.|.++|+..++. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4788999999999999999999999996543 244555555555333 57777799999999986 45677889999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCC---HhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPD---VIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
+.+.|+.+.|..+|++.+.. ++++ ...|...++.-.+.|+.+.+.++.+++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-------l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-------LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-------SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-------cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999875 2333 3589999999999999999999998885
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00015 Score=57.52 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=59.4
Q ss_pred cCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHH
Q 048807 272 KGKTDEAWDVLHVLMKFDAP-LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALE 350 (757)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 350 (757)
.|+++.|+.+++++.+..+. ++...+..+..+|.+.|++++|.+++++ .+.+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57889999999999887653 2455666688999999999999999988 3322 1233444455778889999999999
Q ss_pred HHHHH
Q 048807 351 VFEKM 355 (757)
Q Consensus 351 ~~~~~ 355 (757)
.|++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 88763
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0016 Score=67.45 Aligned_cols=124 Identities=17% Similarity=0.159 Sum_probs=95.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048807 543 GFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDI--GMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVT 620 (757)
Q Consensus 543 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 620 (757)
+.+-+......+++.+....+++++..++.+.... ....-..|..+++..|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456677777888888888888888888887754 1112234556889999999999999999998888899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhc
Q 048807 621 YGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKN 667 (757)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 667 (757)
++.|++.+.+.|++..|.++...|.. .....+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMML-QEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHH-hhccCCchHHHHHHHHHHHh
Confidence 99999999999999999998888877 45556666766666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0016 Score=59.73 Aligned_cols=95 Identities=17% Similarity=0.051 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--ccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHh
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEP--SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVI 371 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 371 (757)
...|..++..+...|++++|...|++.+.....+ ...++..+...+...|++++|+..+++++... +....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-------~~~~~ 107 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-------PFLPQ 107 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCcHH
Confidence 4566667777777788888888888776553222 12467777778888888888888888877653 33445
Q ss_pred HHHHHHHHHH-------HcCCHHHHHHHHHH
Q 048807 372 IFNTLIDGLC-------KVGKQEEALGLIEQ 395 (757)
Q Consensus 372 ~~~~li~~~~-------~~g~~~~A~~~~~~ 395 (757)
++..+...+. +.|++++|...+++
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5566666665 55565555444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.14 Score=51.08 Aligned_cols=251 Identities=14% Similarity=0.151 Sum_probs=134.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhH
Q 048807 456 HGRINSAVEFFQEVTRKGLCANAVTYTI----LITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMND 531 (757)
Q Consensus 456 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 531 (757)
.|++++|.+-|+.|... +.+--. |.-.--+.|+.+.|..+-+.....- +.-...+...+...+..|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 45666666666665542 222111 1111224555555555555544432 2234455666666666666666
Q ss_pred HHHHHHHHHHCC-CCCCHHH--HHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCCHHHHHH
Q 048807 532 ASLVVSKLKEAG-FRPDIVC--YNHLISGF---CKKKMLDKAYEVLQEMEDIGMTPNSVTYN-TLISFLSKSGNFSAARR 604 (757)
Q Consensus 532 A~~~~~~~~~~g-~~~~~~~--~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~ 604 (757)
|+++.+.-.... +.++..- -..|+.+- .-..+...|...-.+..+. .||.+.-- .-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 666665543321 2222221 11121111 1123455555555555544 55544332 23456778888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 605 VLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSP-NTVIYNILIDSLCKNNQVELALSLMEEMKVK 683 (757)
Q Consensus 605 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 683 (757)
+++.+-+....|+.. .+..+.+.|+. +..-+++..+...++| +......+..+-...|++..|..--+....
T Consensus 285 ilE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r- 357 (531)
T COG3898 285 ILETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR- 357 (531)
T ss_pred HHHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-
Confidence 888888765445432 12233444542 2333333322222334 345666677777788888888777766665
Q ss_pred CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCC
Q 048807 684 EVRPNTNTYNAMFKGLRQ-KNMLDKAFKLMDRMIEHACHP 722 (757)
Q Consensus 684 g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~p 722 (757)
..|....|..|.+.-.. .|+-.++...+-+.++..-+|
T Consensus 358 -~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 358 -EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred -hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 36777777777776644 488888888888887654444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0038 Score=61.92 Aligned_cols=288 Identities=17% Similarity=0.134 Sum_probs=150.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccccCC----HhHHHHHHHHHHHcCCHHHHHHHHHHH--HHhhcCCCCCCHHH
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAEISVEPD----VIIFNTLIDGLCKVGKQEEALGLIEQM--RLRLQKGCMPNAVT 410 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~~~~ 410 (757)
.-+|+.|+......+|+.+++.| ..| ...|..|.++|.-.+++++|+++...= ..+......-...+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-------TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs 97 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-------TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS 97 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-------chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence 45788888888888888888766 223 234666777777777888888764321 00000001112233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH----HHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048807 411 YNCLINGFCKSGNIEKGLELFH----LMKQEGV-TPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILI 485 (757)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~----~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 485 (757)
-..|...+--.|.+++|+-.-. -..+.|- ......+..+...|...|+--... .-.+.|-.++.++ .
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~-~--- 169 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVT-S--- 169 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHH-H---
Confidence 3445555555666776654322 1222221 112344555666665554321100 0000111111111 0
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----cCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCC-CCHHHHHHHH
Q 048807 486 TAFCNVNNFQEAIKWFDDMSR----AGC-SADSVVYFTLISGLCQAGRMNDASLVVSKLKE----AGFR-PDIVCYNHLI 555 (757)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~-~~~~~~~~li 555 (757)
.++.|.+.|.+-++ .|- -.--..|..|...|.-.|+++.|+...+.-++ -|-+ .....+..+.
T Consensus 170 -------al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlg 242 (639)
T KOG1130|consen 170 -------ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLG 242 (639)
T ss_pred -------HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccc
Confidence 12233333322111 110 01123456666666677788877766554222 2211 1233566777
Q ss_pred HHHHhcCCHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHH
Q 048807 556 SGFCKKKMLDKAYEVLQEME----DIGM-TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE-----GLVPTVVTYGALI 625 (757)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li 625 (757)
+++.-.|+++.|.+.|+... +.|- .....+..+|...|.-..++++|+.++.+-+.. ...-....+.+|.
T Consensus 243 N~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLg 322 (639)
T KOG1130|consen 243 NCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLG 322 (639)
T ss_pred hhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 77778888888888777643 2221 122345566777777777888888877654431 1112455677888
Q ss_pred HHHHhcCCHHHHHHHHHHhhh
Q 048807 626 HAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~~~~ 646 (757)
.+|...|..++|+.+.+...+
T Consensus 323 na~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 323 NAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHH
Confidence 888888888888777665443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0019 Score=66.99 Aligned_cols=126 Identities=10% Similarity=0.146 Sum_probs=90.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 048807 401 QKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE--GVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANA 478 (757)
Q Consensus 401 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 478 (757)
..+.+-.......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..++++.++..=...|+-||.
T Consensus 59 ~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 59 ERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred hcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 4444556666667777777777788888887777754 22222345568888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 048807 479 VTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQA 526 (757)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 526 (757)
.++|.|++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888877766666666665555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0056 Score=53.53 Aligned_cols=92 Identities=11% Similarity=-0.003 Sum_probs=51.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048807 553 HLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNG 632 (757)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 632 (757)
.+...+...|++++|..+|+-+...+ +.+..-|..|..++-..|++++|+..|.......+ .|...+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 33444555666666666666655554 33444555555556666666666666666655442 24455555556666666
Q ss_pred CHHHHHHHHHHhhh
Q 048807 633 HVDEAMKIFKELSS 646 (757)
Q Consensus 633 ~~~~A~~~~~~~~~ 646 (757)
+.+.|.+.|+....
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.059 Score=52.40 Aligned_cols=177 Identities=8% Similarity=0.062 Sum_probs=97.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048807 554 LISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTY---NTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCV 630 (757)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 630 (757)
....+...|++++|.+.|+++.... |-..... -.++.+|.+.+++++|...+++.++....-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444556677777777777777653 2222221 34556667777777777777777765322222222222222221
Q ss_pred --cC---------------C---HHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048807 631 --NG---------------H---VDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTN 690 (757)
Q Consensus 631 --~g---------------~---~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 690 (757)
.+ + ..+|+..|+++.+ -|=...-..+|...+..+.+. - ..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~---l-a~ 176 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDR---L-AK 176 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHH---H-HH
Confidence 11 1 2344455555544 222222344554444444321 0 01
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhch
Q 048807 691 TYNAMFKGLRQKNMLDKAFKLMDRMIEH--ACHPDYISMEILTEWLSEAGQTEKLKKFVQGYA 751 (757)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (757)
.--.+..-|.+.|.+..|+.-++.+++. +..........++.++.+.|..++|.++.+.+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1124556688888888888888888875 222233666678888888898888888776553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0015 Score=62.56 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=83.2
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChh
Q 048807 267 TRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRAD 346 (757)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 346 (757)
+-+.+.+++++|++.|.++++..+. |.+.|..-..+|.+.|.++.|++-.+..+.-+ +--..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 3456789999999999999998765 88888888999999999999999999988865 334678999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcccccCCHhHHHH
Q 048807 347 EALEVFEKMIAGKETAEISVEPDVIIFNT 375 (757)
Q Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (757)
+|++.|.+.++ +.|+-.+|-.
T Consensus 167 ~A~~aykKaLe--------ldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALE--------LDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhc--------cCCCcHHHHH
Confidence 99999999988 4566655543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00026 Score=56.13 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 048807 668 NQVELALSLMEEMKVKEV-RPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEILTEWLSEAGQTEKLKK 745 (757)
Q Consensus 668 g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~ 745 (757)
|++++|+.+++++.+... .++...+..++.++.+.|++++|+.++++ .+ ..|+. .....++.++.+.|++++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 444555555555544211 01222333344455555555555555544 11 12222 222233444444555555555
Q ss_pred HHh
Q 048807 746 FVQ 748 (757)
Q Consensus 746 ~~~ 748 (757)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.003 Score=62.69 Aligned_cols=269 Identities=16% Similarity=0.121 Sum_probs=160.5
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHH--HHC--CC-CCccchHHHHHH
Q 048807 267 TRFCRKGKTDEAWDVLHVLMKFDAPLEA----ASCNALLNALGREGDFKRMNQLFTEM--KEN--DI-EPSVVTFGTIIN 337 (757)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m--~~~--g~-~p~~~~~~~li~ 337 (757)
.-+||.|+.+....+|+.+++.|.. |. ..|..|..+|.-.+++++|+++...= +.+ |- .-...+-..|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578889999999999999888755 43 45667777788888888888764321 111 10 012223334455
Q ss_pred HHHhcCChhHHHHHHHHHHh----CCCCCcccccCCHhHHHHHHHHHHHcCCH--------------------HHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIA----GKETAEISVEPDVIIFNTLIDGLCKVGKQ--------------------EEALGLI 393 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~ 393 (757)
.+--.|.+++|+....+-+. .|. -.....++..|...|...|+. +.|.++|
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgD-----rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGD-----RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhH-----HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 55556777777655443221 110 012234555666666655532 2333333
Q ss_pred HHHHHhhc-CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHHcCChHHHHHHH
Q 048807 394 EQMRLRLQ-KG-CMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQ----EGVT-PNVVTLNTLVDGMCRHGRINSAVEFF 466 (757)
Q Consensus 394 ~~~~~~~~-~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~ 466 (757)
.+-..... .| .-.--..|..|...|.-.|+++.|+...+.-+. .|-. .....+..+.+++.-.|+++.|.+.|
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 32110000 00 001123466666777778899999877664332 2311 12356778888888899999999888
Q ss_pred HHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 048807 467 QEVTR----KGLC-ANAVTYTILITAFCNVNNFQEAIKWFDDMSRA-----GCSADSVVYFTLISGLCQAGRMNDASLVV 536 (757)
Q Consensus 467 ~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 536 (757)
+.... .|-. .......+|...|.-..++++|+.++.+-+.. +..-...++.+|..+|...|..++|+.+.
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 76433 2221 23445666788888888888998887654321 11235567888999999999999988777
Q ss_pred HHHHH
Q 048807 537 SKLKE 541 (757)
Q Consensus 537 ~~~~~ 541 (757)
+.-++
T Consensus 339 e~hl~ 343 (639)
T KOG1130|consen 339 ELHLR 343 (639)
T ss_pred HHHHH
Confidence 65543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00013 Score=44.89 Aligned_cols=28 Identities=29% Similarity=0.598 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 296 SCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
+||.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.032 Score=49.50 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=107.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHH
Q 048807 614 LVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRP---NTN 690 (757)
Q Consensus 614 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~ 690 (757)
.-|++.....|..+....|+..||...|++... --..-|......+.++....++..+|...++++.+.. | ++.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPD 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCC
Confidence 358888889999999999999999999999887 3445577788899999999999999999999998742 3 233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 048807 691 TYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQG 749 (757)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 749 (757)
+-..+...|...|+..+|..-|+.++. .-|+...-......+.+.|+.+++...+..
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 455677889999999999999999996 467776666667788899988887766544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00017 Score=44.37 Aligned_cols=29 Identities=41% Similarity=0.666 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVKE 684 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 684 (757)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.021 Score=60.11 Aligned_cols=100 Identities=15% Similarity=0.072 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCc--chHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHH
Q 048807 148 INSATLLIRFFGKVSMYDYSLLVYNELDNNLRNT--HVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVF 225 (757)
Q Consensus 148 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~ 225 (757)
+..+..-...|...|.+++|.++-. +.+ .-|-.|..--...=+++-|++.|.+....
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iac------lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl--------------- 614 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIAC------LGVTDTDWRELAMEALEALDFETARKAYIRVRDL--------------- 614 (1081)
T ss_pred cccccccchhhhhccchhhhhcccc------cceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc---------------
Confidence 3344455566777787777755311 111 12555555555555667777777665331
Q ss_pred HHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 048807 226 YALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHV 284 (757)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 284 (757)
..-+.+.-++++.+.|-.|+... +...++-.|++.+|-++|.+
T Consensus 615 -------------~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 -------------RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred -------------HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 00122223445566666666543 44556666777777776654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0069 Score=55.69 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCc--cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPS--VVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDV 370 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 370 (757)
....+..+...+...|++++|...|++.++.+..+. ...+..+...+.+.|++++|+..++++++.. +.+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~ 106 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-------PKQP 106 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccH
Confidence 456788888899999999999999999987643222 3578888899999999999999999999864 4567
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 371 IIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLV 450 (757)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 450 (757)
..+..+...|...|+...+..-++... ..+++|.+++++....+ |+ .|..++
T Consensus 107 ~~~~~lg~~~~~~g~~~~a~~~~~~A~------------------------~~~~~A~~~~~~a~~~~--p~--~~~~~~ 158 (172)
T PRK02603 107 SALNNIAVIYHKRGEKAEEAGDQDEAE------------------------ALFDKAAEYWKQAIRLA--PN--NYIEAQ 158 (172)
T ss_pred HHHHHHHHHHHHcCChHhHhhCHHHHH------------------------HHHHHHHHHHHHHHhhC--ch--hHHHHH
Confidence 778888888888888766655544432 12566677777766642 22 244555
Q ss_pred HHHHHcCC
Q 048807 451 DGMCRHGR 458 (757)
Q Consensus 451 ~~~~~~g~ 458 (757)
..+...|+
T Consensus 159 ~~~~~~~~ 166 (172)
T PRK02603 159 NWLKTTGR 166 (172)
T ss_pred HHHHhcCc
Confidence 55544443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.2 Score=50.85 Aligned_cols=92 Identities=13% Similarity=0.167 Sum_probs=71.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 244 VGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 244 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
+++-+++.+. |.|..+|-.||.-|..+|..++-.+++++|..-- +--..+|..-+.+-....+|.....+|.+.+..
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 3666665543 7899999999999999999999999999997632 223568888888888889999999999999887
Q ss_pred CCCCccchHHHHHHHHH
Q 048807 324 DIEPSVVTFGTIINRLC 340 (757)
Q Consensus 324 g~~p~~~~~~~li~~~~ 340 (757)
.+ +...|...+.-..
T Consensus 106 ~l--~ldLW~lYl~YIR 120 (660)
T COG5107 106 SL--NLDLWMLYLEYIR 120 (660)
T ss_pred hc--cHhHHHHHHHHHH
Confidence 54 4555655554333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.048 Score=53.04 Aligned_cols=182 Identities=13% Similarity=0.048 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAA--SCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
..-.....+.+.|++++|.+.|+.+....+..... ..-.++.+|.+.+++++|...|++.++....-....+...+.+
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 34345666778999999999999999876653222 2245678889999999999999999987422222334344444
Q ss_pred HHh--cC---------------C---hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 339 LCK--LY---------------R---ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRL 398 (757)
Q Consensus 339 ~~~--~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 398 (757)
.+. .+ + ..+|+..|+.+++. |=...-..+|...+..++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------------yP~S~ya~~A~~rl~~l~~ 172 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------------YPNSQYTTDATKRLVFLKD 172 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------------CcCChhHHHHHHHHHHHHH
Confidence 331 11 1 13445555555553 3333334555555555532
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048807 399 RLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE--GVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVT 470 (757)
Q Consensus 399 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 470 (757)
++ ..--..+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.++...+.
T Consensus 173 ~l-------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 173 RL-------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HH-------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11 111225677788999999999999999876 333345667788899999999999988776554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.018 Score=62.40 Aligned_cols=124 Identities=19% Similarity=0.116 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCH
Q 048807 564 LDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKS--------GNFSAARRVLKKMVKEG-LVPTVVTYGALIHAFCVNGHV 634 (757)
Q Consensus 564 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~ 634 (757)
...|..+|++.++.. |.....|..+..++... .++..+.+...+..... ...+...|..+.-.....|++
T Consensus 358 ~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 358 LNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 445666666666553 22233333333322211 12334444444433321 233456677666666677888
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048807 635 DEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYN 693 (757)
Q Consensus 635 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 693 (757)
++|...+++..+ +.|+...|..++..+...|+.++|.+.+++.... .|...+|.
T Consensus 437 ~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~~ 490 (517)
T PRK10153 437 DEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTLY 490 (517)
T ss_pred HHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchHH
Confidence 888888888877 3367778888888888888888888888888774 56555543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0044 Score=56.81 Aligned_cols=27 Identities=15% Similarity=-0.106 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
+|..+...|.+.|++++|+..+++...
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444444444443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.013 Score=49.38 Aligned_cols=56 Identities=20% Similarity=0.183 Sum_probs=27.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCc--cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 048807 302 NALGREGDFKRMNQLFTEMKENDIEPS--VVTFGTIINRLCKLYRADEALEVFEKMIA 357 (757)
Q Consensus 302 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 357 (757)
.++-..|+.++|..+|++....|.... ...+..+...+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555543322 22333444455555555555555555544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.048 Score=57.51 Aligned_cols=87 Identities=14% Similarity=0.172 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHH-------
Q 048807 584 VTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVI------- 656 (757)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~------- 656 (757)
.+...+...+.+...+.-|-++|.+|-+. ..+++.....+++++|+.+-++..+ ..||++.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe---~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE---FKDDVYMPYAQWLA 815 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc---ccccccchHHHHhh
Confidence 34444444445555566666666665431 2344555666777777766665544 2333311
Q ss_pred ----HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 657 ----YNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 657 ----~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
|.-.-.+|-++|+-.||..+++++..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 11122344455666666666666543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0016 Score=48.47 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=44.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
+...+.+.|++++|+..|+++++..+. +...|..+..++.+.|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456677888888888888888887644 6778888888888888888888888888765
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.015 Score=56.21 Aligned_cols=96 Identities=11% Similarity=0.023 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhc-C--ChhHHHHHHHHHHhCCCCCcccccCC
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKL-Y--RADEALEVFEKMIAGKETAEISVEPD 369 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g--~~~~A~~~~~~~~~~~~~~~~~~~~~ 369 (757)
|...|-.|...|.+.|++..|..-|....+.. ++|...+..+...+... | ...++..+|+++++.+ +.|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-------~~~ 226 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-------PAN 226 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-------Ccc
Confidence 44444444444444444444444444444432 22333333333322211 1 2233444444444443 334
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 370 VIIFNTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
+.+...|...+...|++.+|...++.|
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 444444444444444444444444444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0019 Score=48.84 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 048807 653 NTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN-MLDKAFKLMDRMIE 717 (757)
Q Consensus 653 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 717 (757)
+..+|..++..+.+.|++++|+..|++.++.. +.+...|..+..++.+.| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34556666777777777777777777776642 224456666666777777 57777777776665
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0059 Score=49.40 Aligned_cols=81 Identities=11% Similarity=0.190 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHHCCCCCccch
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDA-PLEAASCNALLNALGREG--------DFKRMNQLFTEMKENDIEPSVVT 331 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~ 331 (757)
+....|.-+...+++..-..+|+.+.+.|+ .|++.+|+.++.+.++.. +.-+++.+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445566677777999999999999999999 799999999998887653 23467899999999999999999
Q ss_pred HHHHHHHHHh
Q 048807 332 FGTIINRLCK 341 (757)
Q Consensus 332 ~~~li~~~~~ 341 (757)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.035 Score=46.80 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=28.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 590 ISFLSKSGNFSAARRVLKKMVKEGLVPT--VVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
..++-..|+.++|+.+|++.+..|+... ...+..+...+...|++++|..++++...
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455555555555555555544332 22333444455555555555555555544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0019 Score=48.77 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREG-DFKRMNQLFTEMKE 322 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 322 (757)
..+|..+...+.+.|++++|+..|.+.++.++. ++..|..+..+|.+.| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445666666666666777777766666666543 5666666666666666 56666666666654
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.41 Score=52.72 Aligned_cols=178 Identities=15% Similarity=0.154 Sum_probs=115.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHH
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE--AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRL 339 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 339 (757)
...-++.+++...++.|+.+-.. .+..++ ........+.+.+.|++++|...|-+-+.. +.| ..++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence 34567788888889998877544 222222 123444455667889999999988777653 122 3456677
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 048807 340 CKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFC 419 (757)
Q Consensus 340 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (757)
....+..+-..+++.+.+.+ -.+..--+.|+.+|.+.++.++-.++.+.. ..|.. ..-....+..+.
T Consensus 408 Ldaq~IknLt~YLe~L~~~g-------la~~dhttlLLncYiKlkd~~kL~efI~~~----~~g~~--~fd~e~al~Ilr 474 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKG-------LANSDHTTLLLNCYIKLKDVEKLTEFISKC----DKGEW--FFDVETALEILR 474 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcc-------cccchhHHHHHHHHHHhcchHHHHHHHhcC----CCcce--eeeHHHHHHHHH
Confidence 77777777788888888877 334455567899999999998887777665 22211 111345666777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 048807 420 KSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEV 469 (757)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 469 (757)
+.+-.++|.-+-.+... +......++ -..+++++|++++..+
T Consensus 475 ~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 475 KSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77777777766554433 333444443 3568888998887654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0028 Score=47.19 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=37.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 660 LIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 660 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
++..+.+.|++++|...|++.++.. +-+...+..++.++.+.|++++|...|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456667777777777777777653 22455666677777777777777777777765
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.61 Score=49.65 Aligned_cols=134 Identities=13% Similarity=0.033 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+...|+.||.---...+.+.+..+++.++..- |.----|-.....=.+.|..+.+.++|++-+.. ++-....|.....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 33445555544334444455556666665432 112334555555556666677777777666653 4444445555554
Q ss_pred HHH-hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 338 RLC-KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 338 ~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
.++ ..|+.+.-...|+.+...... --.....|-..|..-..++++.....+++++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~----dF~S~~lWdkyie~en~qks~k~v~~iyeRil 178 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGL----DFLSDPLWDKYIEFENGQKSWKRVANIYERIL 178 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhccc----chhccHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 333 345666666666666543200 11234456666666666666666666666663
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0018 Score=48.78 Aligned_cols=61 Identities=16% Similarity=0.344 Sum_probs=44.3
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHH
Q 048807 270 CRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFG 333 (757)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 333 (757)
.+.|++++|++.|+.+.+..+. +...+..++.+|.+.|++++|.++++++.... |+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHH
Confidence 4678888888888888877655 77777788888888888888888888887763 4433333
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0033 Score=47.32 Aligned_cols=63 Identities=19% Similarity=0.304 Sum_probs=39.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 048807 665 CKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEIL 730 (757)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 730 (757)
.+.|++++|+++|+++.... +-+...+..++.+|.+.|++++|.++++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 35677777777777776642 235566666777777777777777777777653 5554444433
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.35 Score=45.68 Aligned_cols=132 Identities=11% Similarity=0.063 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH-----
Q 048807 445 TLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTL----- 519 (757)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l----- 519 (757)
+.+.++..+.-.|.+.-....+.++++...+.++.....|+++-.+.|+.+.|...|++..+..-..+..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 455566666666777777777777777665666777777777777777777777777765543222222222222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 520 ISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDI 577 (757)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (757)
...|.-.+++.+|...+.++...+. .|+...|.-.-+..-.|+..+|.+..+.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2233344455555555555544421 13333333333333345555555555555554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.02 Score=52.53 Aligned_cols=50 Identities=18% Similarity=0.412 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 546 PDIVCYNHLISGFCK-----KKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK 595 (757)
Q Consensus 546 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 595 (757)
.+..+|..+++.|.+ .|..+-....+..|.+-|+..|..+|+.|++.+=+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 355666666666653 35666666667777777777777777777776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.84 Score=49.76 Aligned_cols=331 Identities=11% Similarity=0.063 Sum_probs=165.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNI--EKGLELFHLMKQEGVTPNVVTLNTLVDG 452 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (757)
.+|+-+...+.+..|.++-..+. .. ...+...|......+.+..+. +++++..++=..... -...+|..+..-
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~---~p-~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~ 516 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLN---LP-ESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARR 516 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhC---Cc-cccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHH
Confidence 45777888889999999888774 11 111255677777777776422 233332222222212 245578888887
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCA----NAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGR 528 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 528 (757)
....|+.+-|..+++.=...+... +..-+..-+.-..+.|+.+-...++-.+...- +...+ +....+
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l------~~~l~~ 587 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL------FMTLRN 587 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH------HHHHHh
Confidence 888999999888765432221110 00011122222333444444433333333210 11111 111233
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHH----hCCCCCCHHHHHHHHHHHHHcCCH---H
Q 048807 529 MNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVL-QEME----DIGMTPNSVTYNTLISFLSKSGNF---S 600 (757)
Q Consensus 529 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~----~~~~~~~~~~~~~li~~~~~~g~~---~ 600 (757)
...|..+|.+..++. |.. .+-+.|....+...+-.+. +... ..+..|+ .......+.+.... +
T Consensus 588 ~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 588 QPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEA 658 (829)
T ss_pred chhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHH
Confidence 445555665544421 111 1222232222222222111 1100 1121222 22333444443321 1
Q ss_pred HHH-------HHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048807 601 AAR-------RVLKKMVK-EGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVEL 672 (757)
Q Consensus 601 ~A~-------~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 672 (757)
+|. .+.+.+.. .|.....-+.+--+.-+...|+..+|.++-.+.+- ||-..|-.-+.+++..+++++
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kwee 733 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEE 733 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHH
Confidence 111 11122211 12222222333444556677888888877666443 777778888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHh
Q 048807 673 ALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQ 748 (757)
Q Consensus 673 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 748 (757)
-.++-+.+. .+.-|.-++.+|.+.|+.+||.+++-+.-. . + -.+.+|.+.|++.+|.+..-
T Consensus 734 LekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--l-~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 734 LEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--L-Q------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC--h-H------HHHHHHHHhccHHHHHHHHH
Confidence 776665543 244566677888888888888888776631 1 1 35566777777777766543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.014 Score=47.25 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=25.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHc
Q 048807 414 LINGFCKSGNIEKGLELFHLMKQEGV-TPNVVTLNTLVDGMCRH 456 (757)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~ 456 (757)
.|.-+...+++.....+|+.++..|+ .|+..+|+.++.+.++.
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R 74 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKR 74 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHc
Confidence 34444455666666666666666666 66666666666655543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.022 Score=55.18 Aligned_cols=102 Identities=11% Similarity=0.039 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCCccchH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREG---DFKRMNQLFTEMKENDIEPSVVTF 332 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~ 332 (757)
|.|..-|-.|...|.+.|+++.|...|.+..+..++ +...+..+..++.... ...++..+|++++..+ +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 779999999999999999999999999999998765 8888888887766443 4568999999999986 4567777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 048807 333 GTIINRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 333 ~~li~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
..|...+...|++.+|...++.|++..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 777788999999999999999999864
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.98 Score=49.27 Aligned_cols=346 Identities=14% Similarity=0.149 Sum_probs=188.2
Q ss_pred HCCCCCccchH-----HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 322 ENDIEPSVVTF-----GTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 322 ~~g~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
.-|++.+..-| ..+|+-+...+.+..|+++-..+...- ......+.....-+.+..+.. -.++++.+
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-------~~~~~Vl~~Wa~~kI~~~d~~-d~~vld~I 496 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE-------SQGDRVLLEWARRKIKQSDKM-DEEVLDKI 496 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc-------ccccHHHHHHHHHHHhccCcc-chHHHHHH
Confidence 34555544444 346777788889999999888774321 112566777777777764321 12233333
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 397 RLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVT----PNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 397 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
..+.... .-...+|..+.......|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+-...++..+...
T Consensus 497 ~~kls~~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~ 575 (829)
T KOG2280|consen 497 DEKLSAK-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK 575 (829)
T ss_pred HHHhccc-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 3221222 245668888898888999999998887632211100 01111222233333444444444444333322
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHH-HHHH----HCCCCCC
Q 048807 473 GLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVV-SKLK----EAGFRPD 547 (757)
Q Consensus 473 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~----~~g~~~~ 547 (757)
- +...+ .....+...|..+|.+..+.. |.. .+-+.|-+..+...+-.+. +... ..|..|+
T Consensus 576 ~---~~s~l------~~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~ 640 (829)
T KOG2280|consen 576 L---NRSSL------FMTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA 640 (829)
T ss_pred H---HHHHH------HHHHHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh
Confidence 0 11111 111223445666666655532 211 1222222222222221111 1100 1122233
Q ss_pred HHHHHHHHHHHHhcCCHH---HH-------HHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 048807 548 IVCYNHLISGFCKKKMLD---KA-------YEVLQEMED-IGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVP 616 (757)
Q Consensus 548 ~~~~~~li~~~~~~g~~~---~A-------~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 616 (757)
.......+.+..... +| ..+.+.+.. .|..-..-+.+--+.-+...|+..+|.++-.+.. -|
T Consensus 641 ---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ip 713 (829)
T KOG2280|consen 641 ---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IP 713 (829)
T ss_pred ---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----Cc
Confidence 233344444433311 11 122222221 1212222344555666778899999998887775 47
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 617 TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMF 696 (757)
Q Consensus 617 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 696 (757)
|...|..-+.+++..+++++-+++-+.... +.-|.-.+.+|.+.|+.+||.+++-+... .. -.+
T Consensus 714 dKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv 777 (829)
T KOG2280|consen 714 DKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKV 777 (829)
T ss_pred chhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHH
Confidence 888898889999999999997777655432 34577788899999999999999877532 21 567
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 048807 697 KGLRQKNMLDKAFKLMDR 714 (757)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~ 714 (757)
.+|.+.|++.+|.+..-+
T Consensus 778 ~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 778 KAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhccHHHHHHHHHH
Confidence 889999999999876443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.23 Score=46.97 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
.....+...|++++|.+.|+.+... -.+.+--......++.++.+.|++++|...++..++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~-~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDR-YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555667777777777776532 1111222344555666667777777777777766654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.2 Score=47.30 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 411 YNCLINGFCKSGNIEKGLELFHLMKQEGVT--PNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
+-.....+...|++.+|.+.|+.+...-.. --....-.++.++.+.|++++|...+++.++.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455566777788888887777765211 11234555667777777777777777776665
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.035 Score=51.02 Aligned_cols=105 Identities=22% Similarity=0.309 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 048807 580 TPNSVTYNTLISFLSK-----SGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654 (757)
Q Consensus 580 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 654 (757)
..+..+|..+++.|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+ |.+. -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 4577888888888764 36777777788888888888899999988887654 2221 011111110
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 655 VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNM 704 (757)
Q Consensus 655 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 704 (757)
.-| -.+-+-|++++++|...|+-||.+++..++..+.+.+.
T Consensus 113 -------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 -------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 001 12345567777777777777777777777777655443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.028 Score=55.10 Aligned_cols=99 Identities=12% Similarity=0.014 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC---ccchHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE--AASCNALLNALGREGDFKRMNQLFTEMKENDIEP---SVVTFG 333 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~ 333 (757)
...|..-+..+.+.|++++|+..|+.+++..|... ..++..+...|...|++++|...|+.+++.- +. ....+.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHH
Confidence 44566666666778999999999999999865422 4678889999999999999999999999762 21 234455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 048807 334 TIINRLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 334 ~li~~~~~~g~~~~A~~~~~~~~~~ 358 (757)
.++..+...|+.++|.+.|+.+++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667788999999999999999885
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.68 E-value=1.2 Score=47.62 Aligned_cols=185 Identities=13% Similarity=0.072 Sum_probs=109.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 512 DSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLIS 591 (757)
Q Consensus 512 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 591 (757)
+..+|..-+.--...|+.+.+.-+|+...-.- ..-...|-..+......|+.+-|..++....+..++....+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 44677777777788888888888888766431 11122344455555555888888877777666544333333222222
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHhhhcCCCCCCHHHHHHHHHH----
Q 048807 592 FLSKSGNFSAARRVLKKMVKEGLVPTVV-TYGALIHAFCVNGHVDEAM---KIFKELSSSSNVSPNTVIYNILIDS---- 663 (757)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~~p~~~~~~~li~~---- 663 (757)
..-..|+++.|..+++.....- |+.+ .-..-+....+.|..+.+. .++....+ ... +..+...+.--
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~--~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKE--NNGILEKLYVKFARL 449 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-ccc--CcchhHHHHHHHHHH
Confidence 2344678888888888888763 4432 2223345556777777777 44433333 111 11122222211
Q ss_pred -HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 664 -LCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN 703 (757)
Q Consensus 664 -~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 703 (757)
+.-.++.+.|..++.++.+. .+++...|..+++.+...+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 22357788888888888875 4666777777777766554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.62 E-value=1 Score=46.17 Aligned_cols=58 Identities=16% Similarity=0.280 Sum_probs=35.3
Q ss_pred HHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 656 IYNILIDS--LCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRM 715 (757)
Q Consensus 656 ~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (757)
.-|.|.++ +..+|++.++...-..+.+ +.|++.+|..++-++....++++|.+++..+
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34444433 3456677776655555544 4667777777766666667777777766654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.67 Score=43.88 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHH-----HHHH
Q 048807 588 TLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYN-----ILID 662 (757)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-----~li~ 662 (757)
.++..+.-.|.+.-...++.+.++...+.+......|+..-.+.|+.+.|...|++..+..+ .-|..+.+ ....
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhh
Confidence 34444444445555555555555544344445555555555555555555555554433111 11211222 1222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 663 SLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 663 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
.|.-++++.+|...|.+....+ +.|+..-|.-.-++.-.|+..+|++.++.|++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2333445555555555554432 22333333333333344555555555555554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.012 Score=44.89 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=44.8
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048807 267 TRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEND 324 (757)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 324 (757)
..|.+.+++++|+++++++.+.++. +...|......+.+.|++++|.+.|++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4677788888888888888887655 77777778888888888888888888887764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.033 Score=49.03 Aligned_cols=92 Identities=15% Similarity=0.084 Sum_probs=79.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
..--+-..|++++|..+|.-+...++. +..-|..|...+-..+++++|...|......+ .-|...+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 444556899999999999999988766 78889999999999999999999999887765 3567777778899999999
Q ss_pred hhHHHHHHHHHHhC
Q 048807 345 ADEALEVFEKMIAG 358 (757)
Q Consensus 345 ~~~A~~~~~~~~~~ 358 (757)
.+.|+..|+.++..
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999864
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.047 Score=53.56 Aligned_cols=98 Identities=13% Similarity=0.043 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 048807 621 YGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN-TVIYNILIDSLCKNNQVELALSLMEEMKVKE--VRPNTNTYNAMFK 697 (757)
Q Consensus 621 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~ 697 (757)
|...+..+.+.|++++|...|+.+.+.+.-.+- ...+..++..|...|++++|...|+.+.+.. -+.....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444443344556677777777666652211100 1345566667777777777777777776531 0112344445556
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 048807 698 GLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 698 ~~~~~g~~~~A~~~~~~~~~~ 718 (757)
++...|+.++|.++|++.++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666777777777777777653
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=1 Score=45.15 Aligned_cols=292 Identities=17% Similarity=0.146 Sum_probs=188.4
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhCCCCCCHHH--H
Q 048807 373 FNTLIDGLC--KVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING--FCKSGNIEKGLELFHLMKQEGVTPNVVT--L 446 (757)
Q Consensus 373 ~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~ 446 (757)
|..|-.++. -.|+-..|.++-.+.. +-+..|......++.+ -.-.|+++.|.+-|+.|... |.... +
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~----~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGL 157 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARAS----KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGL 157 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHH----hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhH
Confidence 444444444 3678888888877763 2233444444444443 34579999999999999873 22221 2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHhh--HHHHHHHH
Q 048807 447 NTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAG-CSADSVV--YFTLISGL 523 (757)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~--~~~li~~~ 523 (757)
..|.-.--+.|..+.|.++-+..-..-.. -...+.+.+...|..|+++.|+++.+.-.... +.++..- -..|+.+-
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 23333345689999999888887765333 45677888999999999999999998765532 2333321 12222221
Q ss_pred H---hcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 048807 524 C---QAGRMNDASLVVSKLKEAGFRPDIV-CYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNF 599 (757)
Q Consensus 524 ~---~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 599 (757)
. -.-+...|...-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+.. |....+.. ..+.+.|+
T Consensus 237 A~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gd- 309 (531)
T COG3898 237 AMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGD- 309 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCC-
Confidence 1 123456666666555554 55644 23344578899999999999999999884 55544432 23345554
Q ss_pred HHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHh-cCCHHHHHHH
Q 048807 600 SAARRVLKKMVKE-GLVP-TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCK-NNQVELALSL 676 (757)
Q Consensus 600 ~~A~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~ 676 (757)
.+..-+++..+. .++| +..+...+..+-...|++..|..--+.... ..|....|..|.+.-.. .|+-.++...
T Consensus 310 -ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 310 -TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred -cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHH
Confidence 333333332211 1234 566777778888888999888877766654 56888889888887654 4999999999
Q ss_pred HHHHHhC
Q 048807 677 MEEMKVK 683 (757)
Q Consensus 677 ~~~m~~~ 683 (757)
+-+....
T Consensus 386 lAqav~A 392 (531)
T COG3898 386 LAQAVKA 392 (531)
T ss_pred HHHHhcC
Confidence 9998864
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.2 Score=45.08 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=33.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 048807 520 ISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNF 599 (757)
Q Consensus 520 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 599 (757)
+.-+...|+...|.++-.+.. -|+...|-..+.+++..++|++-.++... . ..+.-|..++..|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCCH
Confidence 333444444444444433332 23444444445555555555444432211 1 1223444444444444544
Q ss_pred HHHHHHHHH
Q 048807 600 SAARRVLKK 608 (757)
Q Consensus 600 ~~A~~~~~~ 608 (757)
.+|..+..+
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 444444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.38 E-value=1.1 Score=46.03 Aligned_cols=78 Identities=12% Similarity=0.079 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048807 411 YNCLINGFCKSGNIEKGLELFHLMKQEG---VTPNVVTLNTLVDGMCR---HGRINSAVEFFQEVTRKGLCANAVTYTIL 484 (757)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 484 (757)
...++-.|....+++..+++.+.+.... +.-....-...+-++.+ .|+.++|++++..+......+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3345555777777777777777776541 11111222233344455 67777777777775555555566666666
Q ss_pred HHHH
Q 048807 485 ITAF 488 (757)
Q Consensus 485 i~~~ 488 (757)
...|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 5544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.36 E-value=1.9 Score=49.80 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 048807 481 YTILITAFCNVN--NFQEAIKWFDDMSR 506 (757)
Q Consensus 481 ~~~li~~~~~~g--~~~~A~~~~~~m~~ 506 (757)
.-.+|..|.+.+ .+++|+....+...
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 345666777666 56666666655553
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.025 Score=43.09 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=42.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 048807 662 DSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYI 725 (757)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 725 (757)
..|.+.+++++|.+++++++..+ +.+...|...+.++.+.|++++|.+.+++.++. .|+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcH
Confidence 45677777888888887777752 335556666777777778888888888877764 45443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.18 Score=44.74 Aligned_cols=58 Identities=21% Similarity=0.329 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLM 434 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (757)
...++..+...|++++|.++.+.+. ...|-|...|..+|.+|...|+..+|.+.|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l----~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRAL----ALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH----HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344445555555555555555552 223444555555555555555555555555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.008 Score=46.68 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVK--EVR---PN-TNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
+|+.+...|...|++++|+..|++..+. ... |+ ..++..++.++...|++++|++++++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5667777777777777777777776631 011 11 34566777777777777777777777654
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.14 Score=51.69 Aligned_cols=139 Identities=15% Similarity=0.107 Sum_probs=98.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 188 IDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLIT 267 (757)
Q Consensus 188 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~ 267 (757)
++.|.+.|++..|...|+++...= ... +..+.++..... ..-...++.|.-
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l----~~~-----------------~~~~~ee~~~~~--------~~k~~~~lNlA~ 265 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFL----EYR-----------------RSFDEEEQKKAE--------ALKLACHLNLAA 265 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHh----hcc-----------------ccCCHHHHHHHH--------HHHHHHhhHHHH
Confidence 678899999999999999876520 000 001111111110 112346777889
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccch-HHHHHHHHHhcCCh-
Q 048807 268 RFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVT-FGTIINRLCKLYRA- 345 (757)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~- 345 (757)
+|.|.+++.+|++..+..+..++. |+-..-.=..+|...|+++.|+..|+++++. .|+... -+.|+.+--+..+.
T Consensus 266 c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 266 CYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998865 8888888899999999999999999999997 455444 44454444444433
Q ss_pred hHHHHHHHHHHhC
Q 048807 346 DEALEVFEKMIAG 358 (757)
Q Consensus 346 ~~A~~~~~~~~~~ 358 (757)
+...++|..|...
T Consensus 343 ~kekk~y~~mF~k 355 (397)
T KOG0543|consen 343 EKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHhhc
Confidence 3457888888754
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.22 E-value=1.7 Score=44.15 Aligned_cols=109 Identities=12% Similarity=0.175 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048807 480 TYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFC 559 (757)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 559 (757)
+.+..|.-+...|+...|.++-.+.. .||..-|...+.+++..++|++-..+... +-++..|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34445666777888888887766653 46888889999999999999887765432 224577888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048807 560 KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKK 608 (757)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (757)
+.|...+|..+..++. +..-+..|.++|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999888877621 24567788899999888765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.1 Score=52.70 Aligned_cols=125 Identities=18% Similarity=0.066 Sum_probs=95.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCC-----CC---------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccc
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFD-----AP---------LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVV 330 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~-----~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 330 (757)
-.+.|.+.|++..|..-|+++...= .+ .-..+++.+..+|.+.+++.+|++.....+..+ ++|+-
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 3467889999999999988866431 11 113578888899999999999999999999987 67888
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 048807 331 TFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEE-ALGLIEQMR 397 (757)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~ 397 (757)
..-.-..+|...|+++.|+..|+++++.. |.|-.+-+.|+.+-.+..+..+ ..++|..|-
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~-------P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLE-------PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888899999999999999999999864 4555566666666655555444 366777774
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.26 Score=43.75 Aligned_cols=57 Identities=16% Similarity=0.322 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 447 NTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDM 504 (757)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (757)
..++..+...|++++|..+...+....+. +...|..+|.+|...|+..+|.++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444445555555555555555554322 4455555555555555555555555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.2 Score=45.70 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK---SGNIEKGLELFHLMKQEGVTPNVVTLNTLVD 451 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 451 (757)
.++-.|....+++...++.+.+..............-...+-++.+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688999999999999998621001112223333445556667 8999999999999776666778889988887
Q ss_pred HHHHc---------CChHHHHHHHHHHHHC
Q 048807 452 GMCRH---------GRINSAVEFFQEVTRK 472 (757)
Q Consensus 452 ~~~~~---------g~~~~A~~~~~~~~~~ 472 (757)
.|-.. ..+++|...|.+.-+.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 76431 1244555555554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.12 Score=53.39 Aligned_cols=67 Identities=10% Similarity=0.071 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEA---ASCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
+.+...++.+..+|.+.|++++|+..|++.++.++. +. .+|..+..+|...|++++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667889999999999999999999999999998755 33 46999999999999999999999999985
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.6 Score=41.86 Aligned_cols=201 Identities=16% Similarity=0.103 Sum_probs=115.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 513 SVVYFTLISGLCQAGRMNDASLVVSKLKEA-GFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLIS 591 (757)
Q Consensus 513 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 591 (757)
...+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344555555556666666666555555431 122334455555555666666666666666666543222 122222222
Q ss_pred -HHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CHHHHHHHHHHHHhc
Q 048807 592 -FLSKSGNFSAARRVLKKMVKEGL--VPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSP-NTVIYNILIDSLCKN 667 (757)
Q Consensus 592 -~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 667 (757)
.+...|+++.|...+.+...... ......+......+...++.+++...+....+ .... ....+..+...+...
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 56677777777777777654211 11233344444445667777777777777766 2222 355677777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 668 NQVELALSLMEEMKVKEVRPN-TNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 668 g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
+++++|...+...... .|+ ...+..+...+...|..+++...+.+....
T Consensus 216 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7788888888777764 333 344444455555666778888777777653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.51 Score=41.77 Aligned_cols=88 Identities=14% Similarity=0.010 Sum_probs=50.1
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048807 522 GLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSA 601 (757)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 601 (757)
-+...|++++|..+|+-+...++. +..-|..|..++-..+++++|...|......+ ..|...+-.....|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence 344566666666666665554332 44445555566666666666666666554443 2344444455566666666666
Q ss_pred HHHHHHHHHh
Q 048807 602 ARRVLKKMVK 611 (757)
Q Consensus 602 A~~~~~~m~~ 611 (757)
|+..|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 6666666655
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.083 Score=54.57 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 616 PTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT----VIYNILIDSLCKNNQVELALSLMEEMKVK 683 (757)
Q Consensus 616 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 683 (757)
.+...++.+..+|.+.|++++|+..|++..+ +.|+. .+|..+..+|.+.|+.++|+..+++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567788888888888888888888888776 34553 34788888888888888888888888774
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.14 Score=43.61 Aligned_cols=80 Identities=21% Similarity=0.298 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 048807 584 VTYNTLISFLSKSGNFSAARRVLKKMVK---------------EGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSS 648 (757)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---------------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 648 (757)
.++..++.++++.|+++....+++..-. ....|+..+..+++.+|+..|++..|+++.+...+.+
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 4455555555555555555555543321 1234555555555555555555555555555555555
Q ss_pred CCCCCHHHHHHHHHH
Q 048807 649 NVSPNTVIYNILIDS 663 (757)
Q Consensus 649 ~~~p~~~~~~~li~~ 663 (757)
+++-+..+|..|+.-
T Consensus 83 ~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHH
Confidence 555455555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.7 Score=40.90 Aligned_cols=203 Identities=12% Similarity=0.122 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHH
Q 048807 297 CNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTL 376 (757)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (757)
|..-..+|....++++|...+.+..+- ...| ..+-... .-++.|.-+.+++.+. +--+..++--
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnn-rslfhAA------KayEqaamLake~~kl--------sEvvdl~eKA 97 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENN-RSLFHAA------KAYEQAAMLAKELSKL--------SEVVDLYEKA 97 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhc-ccHHHHH------HHHHHHHHHHHHHHHh--------HHHHHHHHHH
Confidence 344445566666677766666655531 1112 1211111 2234555555555442 2223445556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---C--CCCCHHHHHHHHH
Q 048807 377 IDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE---G--VTPNVVTLNTLVD 451 (757)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~p~~~~~~~li~ 451 (757)
..+|..+|..+-|-..+++.... .+. -+.++|+++|.+.... + ...-...+....+
T Consensus 98 s~lY~E~GspdtAAmaleKAak~-len------------------v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 98 SELYVECGSPDTAAMALEKAAKA-LEN------------------VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHhCCcchHHHHHHHHHHH-hhc------------------CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 66777777777777766665322 222 3334444444443221 0 0001122333444
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHhhHHHHHHHH
Q 048807 452 GMCRHGRINSAVEFFQEVTRK----GLCANA-VTYTILITAFCNVNNFQEAIKWFDDMSRAG---CSADSVVYFTLISGL 523 (757)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~ 523 (757)
.+.+...+++|-..+.+-... .-.++. ..|-..|-.|.-..++..|.+.+++-.+.+ -+.+..+...|+.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 555555565554443322110 001111 223344444555566777777776643322 123444555555554
Q ss_pred HhcCChhHHHHH
Q 048807 524 CQAGRMNDASLV 535 (757)
Q Consensus 524 ~~~g~~~~A~~~ 535 (757)
..|+.+++..+
T Consensus 239 -d~gD~E~~~kv 249 (308)
T KOG1585|consen 239 -DEGDIEEIKKV 249 (308)
T ss_pred -ccCCHHHHHHH
Confidence 34455554443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.045 Score=42.38 Aligned_cols=64 Identities=25% Similarity=0.309 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 371 IIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCM---PN-AVTYNCLINGFCKSGNIEKGLELFHLMK 435 (757)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (757)
.+++.+...|...|++++|+..|++.... ..... |+ ..+++.+..+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666666666666666665422 11111 11 3445555555555555555555555543
|
... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.34 Score=47.88 Aligned_cols=229 Identities=13% Similarity=0.065 Sum_probs=122.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCChhHHHHHHHH----HHHCC-CCCCHHHHHHHHHHHHh
Q 048807 488 FCNVNNFQEAIKWFDDMSRAG--CSADSVVYFTLISGLCQAGRMNDASLVVSK----LKEAG-FRPDIVCYNHLISGFCK 560 (757)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~g-~~~~~~~~~~li~~~~~ 560 (757)
+....+.++|+..+.+-+..- ...--.++..+..+.+..|.+++++..--. ..+.. -..-...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777877777655431 011223556666777777777776543221 11110 00012244455555555
Q ss_pred cCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc
Q 048807 561 KKMLDKAYEVLQEMEDI-GMTP---NSVTYNTLISFLSKSGNFSAARRVLKKMVKEG-----LVPTVVTYGALIHAFCVN 631 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~ 631 (757)
..++.+++.+-..-... |..| -.....++..++...+.++++++.|+...+.- ......++..|...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555544433322 1111 11233445666666777888888887776531 111235677777777777
Q ss_pred CCHHHHHHHHHHhhh---cCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHH
Q 048807 632 GHVDEAMKIFKELSS---SSNVSPNTVIY-----NILIDSLCKNNQVELALSLMEEMKV----KEVRPN-TNTYNAMFKG 698 (757)
Q Consensus 632 g~~~~A~~~~~~~~~---~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~ 698 (757)
.++++|.-+..+..+ ..++..-..-| ..|.-++...|+...|.+.-++..+ .|-.+- ......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 888887776655433 22322111122 2334456666777777776666543 332221 1233466777
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 048807 699 LRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 699 ~~~~g~~~~A~~~~~~~~ 716 (757)
|...|+.+.|..-|+++.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 777788888777777775
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.72 E-value=4.5 Score=45.05 Aligned_cols=178 Identities=14% Similarity=0.198 Sum_probs=109.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN--AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLV 450 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 450 (757)
...-++.+++...++-|..+.+.- +..++ ........+.+.+.|++++|.+.|-+-... +.|. .++
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 344567777888888888776654 11222 122333455566789999999888776643 3332 234
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChh
Q 048807 451 DGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMN 530 (757)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 530 (757)
.-|....+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.+..+.-. .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 4555666667777788888888876 55566778899999998888776665543 2211 112344566666777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 531 DASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEM 574 (757)
Q Consensus 531 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (757)
+|..+-..... +..... -.+-..+++++|.+.+..+
T Consensus 481 ~a~~LA~k~~~-----he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 77666554432 222222 2344567777777777654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.19 Score=48.98 Aligned_cols=155 Identities=14% Similarity=0.059 Sum_probs=108.6
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHH----HHHHHHHhcCCh
Q 048807 270 CRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFG----TIINRLCKLYRA 345 (757)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~ 345 (757)
...|+..+|-..++++++.- |.|..+++-.=.++..+|+.+.-...++++... ..+|.-.|. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34688888888888888764 448888888889999999999999999888765 234442222 222344678999
Q ss_pred hHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHH
Q 048807 346 DEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIE 425 (757)
Q Consensus 346 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 425 (757)
++|.+.-++..+.+ +.|..+-.++...+...|++.++.++..+-......+...-..-|-...-.+...+.++
T Consensus 192 ~dAEk~A~ralqiN-------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred hhHHHHHHhhccCC-------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence 99999999998876 66788888889999999999999998876531111111111122333344556667888
Q ss_pred HHHHHHHH
Q 048807 426 KGLELFHL 433 (757)
Q Consensus 426 ~A~~~~~~ 433 (757)
.|+++|+.
T Consensus 265 ~aleIyD~ 272 (491)
T KOG2610|consen 265 KALEIYDR 272 (491)
T ss_pred HHHHHHHH
Confidence 88888864
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.56 E-value=2.3 Score=40.63 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=31.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 695 MFKGLRQKNMLDKAFKLMDRMIEHACHPDY---ISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
+..-|.+.|.+..|..-+++|++. ..-.. ..+..+..+|.+.|..++|.+.-+-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 344566667777777777777664 22111 34445556666666666666555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.56 E-value=2 Score=42.73 Aligned_cols=128 Identities=15% Similarity=0.093 Sum_probs=59.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHH---
Q 048807 554 LISGFCKKKMLDKAYEVLQEMEDIGM-----TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE----GLVPTVVTY--- 621 (757)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~--- 621 (757)
+..++...+.++++++.|+...+.-. .....++..|...|.+..|+++|.-+..+..+. ++..-..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44445555555666666555443211 111234555666666666666665555544321 111101111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 622 --GALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT----VIYNILIDSLCKNNQVELALSLMEEMK 681 (757)
Q Consensus 622 --~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 681 (757)
.-|.-++...|++..|.+..++..+..-..-|. .....+.+.|...|+.+.|+.-|++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 122334555566666655555544311111122 233455666666666666666655543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.93 Score=38.08 Aligned_cols=139 Identities=12% Similarity=0.174 Sum_probs=79.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048807 560 KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMK 639 (757)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 639 (757)
-.|..++..++..+..... +..-+|.+|--....-+-+-..+.++..-+ -.|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHH
Confidence 3567777777777776642 455555555444444444444444444332 1221 23445555444
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048807 640 IFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHA 719 (757)
Q Consensus 640 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 719 (757)
.+-.+- .+.......++.+.++|+-++-.++..++... -.+++.....+..+|.+-|+..+|-+++.++.+.|
T Consensus 78 C~~~~n------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 78 CYAKRN------KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 443322 23345566778888899999988888888753 36788888889999999999999999999998887
Q ss_pred CC
Q 048807 720 CH 721 (757)
Q Consensus 720 ~~ 721 (757)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 64
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.8 Score=49.47 Aligned_cols=116 Identities=12% Similarity=0.080 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHHHcCCHHH
Q 048807 632 GHVDEAMKIFKELSSSSNVSPNTVIYN-ILIDSLCKNNQVELALSLMEEMKVK--EV-RPNTNTYNAMFKGLRQKNMLDK 707 (757)
Q Consensus 632 g~~~~A~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~--g~-~p~~~~~~~l~~~~~~~g~~~~ 707 (757)
...+.|.++++.+.+. . |+...|. .-...+...|++++|++.|++.... .. .-....+.-+.+++.-.++|++
T Consensus 247 ~~~~~a~~lL~~~~~~--y-P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--Y-PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHh--C-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 3455566666665551 1 4433332 2234444556666666666654421 00 0112334445555556666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCH-------HHHHHHHhhch
Q 048807 708 AFKLMDRMIEHACHPDYISMEILTEWL-SEAGQT-------EKLKKFVQGYA 751 (757)
Q Consensus 708 A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~~-------~~A~~~~~~~~ 751 (757)
|.+.+.++.+. -.-...+|..+..+| ...|+. ++|.+++++.|
T Consensus 324 A~~~f~~L~~~-s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKE-SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhc-cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 66666666553 122233333333322 233555 55666665544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.9 Score=41.93 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=26.5
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048807 268 RFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKE 322 (757)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 322 (757)
.....|++.+|...|.......+. +...-..++..|...|+.+.|..++..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 334455555555555555544433 334444445555555555555555554443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.7 Score=42.30 Aligned_cols=152 Identities=13% Similarity=0.090 Sum_probs=107.9
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHH
Q 048807 303 ALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCK 382 (757)
Q Consensus 303 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 382 (757)
.....|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+.... -.........-|..+.+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~------~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA------QDKAAHGLQAQIELLEQ 215 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc------hhhHHHHHHHHHHHHHH
Confidence 4566799999999999998875 3345667778899999999999999999875432 11222222334556666
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChH
Q 048807 383 VGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE--GVTPNVVTLNTLVDGMCRHGRIN 460 (757)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~ 460 (757)
.....+..++-.+.. ..+.|...-..+...+...|+.+.|++.+-.+.++ |.. |...-..++..+.-.|.-+
T Consensus 216 aa~~~~~~~l~~~~a-----adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 216 AAATPEIQDLQRRLA-----ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HhcCCCHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 666655555555542 12558888899999999999999999988777765 344 6667788888888888555
Q ss_pred HHHHHHH
Q 048807 461 SAVEFFQ 467 (757)
Q Consensus 461 ~A~~~~~ 467 (757)
.+...++
T Consensus 290 p~~~~~R 296 (304)
T COG3118 290 PLVLAYR 296 (304)
T ss_pred HHHHHHH
Confidence 5444333
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.33 Score=41.39 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 617 TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMF 696 (757)
Q Consensus 617 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 696 (757)
|..++.+++.++++.|+++....+++.. .|+..+... ..+. --......|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHH
Confidence 3456777777777777777777776544 333332210 0000 111344678888899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc
Q 048807 697 KGLRQKNMLDKAFKLMDRMIEH-ACHPDYISMEILTEWLSEA 737 (757)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~ 737 (757)
.+|+..|++..|+++++...+. +++-+..+|..|+..+...
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998888653 6777788899888876654
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.46 Score=49.38 Aligned_cols=144 Identities=11% Similarity=0.109 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHh
Q 048807 598 NFSAARRVLKKMVKE-GLVPT-VVTYGALIHAFCVN---------GHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCK 666 (757)
Q Consensus 598 ~~~~A~~~~~~m~~~-~~~p~-~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 666 (757)
..+.|..+|.+.+.. .+.|+ ...|..+..++... ....+|.++-++..+ --+.|......++.+...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 478899999999922 24555 45666666555322 245677788887777 233577788888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHH
Q 048807 667 NNQVELALSLMEEMKVKEVRPNT-NTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY---ISMEILTEWLSEAGQTEK 742 (757)
Q Consensus 667 ~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~ 742 (757)
.|+++.|...|++.... .||. .+|......+.-.|+.++|.+.+++.++ +.|.. .+....++.|+..+ +++
T Consensus 351 ~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~ 425 (458)
T PRK11906 351 SGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKN 425 (458)
T ss_pred hcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhh
Confidence 89999999999999985 5664 5777777888889999999999999886 46654 34444455666665 466
Q ss_pred HHHHHh
Q 048807 743 LKKFVQ 748 (757)
Q Consensus 743 A~~~~~ 748 (757)
|.+++-
T Consensus 426 ~~~~~~ 431 (458)
T PRK11906 426 NIKLYY 431 (458)
T ss_pred hHHHHh
Confidence 666553
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.77 Score=47.82 Aligned_cols=81 Identities=10% Similarity=-0.032 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHH---------cCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhc
Q 048807 275 TDEAWDVLHVLM---KFDAPLEAASCNALLNALGR---------EGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKL 342 (757)
Q Consensus 275 ~~~A~~~~~~~~---~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 342 (757)
.+.|..+|.++. ..++. ....|..+...+.. ..+..+|.++-+..++.+ +.|......+...+.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456777888887 44322 24444444333221 112233444444444443 23334433333333444
Q ss_pred CChhHHHHHHHHHHh
Q 048807 343 YRADEALEVFEKMIA 357 (757)
Q Consensus 343 g~~~~A~~~~~~~~~ 357 (757)
++++.|..+|++...
T Consensus 352 ~~~~~a~~~f~rA~~ 366 (458)
T PRK11906 352 GQAKVSHILFEQAKI 366 (458)
T ss_pred cchhhHHHHHHHHhh
Confidence 444444444444444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.26 E-value=6.8 Score=44.23 Aligned_cols=441 Identities=14% Similarity=0.120 Sum_probs=220.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCCc--cchHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCcccccC
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKE-NDIEPS--VVTFGTIINRLC-KLYRADEALEVFEKMIAGKETAEISVEP 368 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~--~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 368 (757)
+...|..||.. |++.++.+.+ ..++|. ..++..+...+. ...++++|...+++.+.... .+
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~------~~ 93 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE------RH 93 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc------cc
Confidence 55666666654 5566666663 333333 344555666554 57788888888888765431 11
Q ss_pred C-----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCC---
Q 048807 369 D-----VIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQK-GCMPNAVTYNCL-INGFCKSGNIEKGLELFHLMKQEG--- 438 (757)
Q Consensus 369 ~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g--- 438 (757)
+ -.....++..|.+.+... |...+++....... +..+-...+.-+ +..+...++...|.+.++.+....
T Consensus 94 ~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~ 172 (608)
T PF10345_consen 94 RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR 172 (608)
T ss_pred chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc
Confidence 1 122345677777777766 88888876432111 111112222333 233333478888988888877542
Q ss_pred CCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 048807 439 VTPNVVTLNTLVDGMC--RHGRINSAVEFFQEVTRKGL---------CANAVTYTILITAF--CNVNNFQEAIKWFDDMS 505 (757)
Q Consensus 439 ~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~ 505 (757)
..|...++..++.+.. +.+..+++.+..+++..... .|-..+|..+++.+ ...|+++.+...++++.
T Consensus 173 ~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 173 GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2334444544544443 44556677777766633211 23445666666543 45677666665555442
Q ss_pred H---cC--CC-------------------------CCHhhH---------HHHHHH--HHhcCChhHHHHHHHH------
Q 048807 506 R---AG--CS-------------------------ADSVVY---------FTLISG--LCQAGRMNDASLVVSK------ 538 (757)
Q Consensus 506 ~---~~--~~-------------------------~~~~~~---------~~li~~--~~~~g~~~~A~~~~~~------ 538 (757)
+ .. .+ +....| .-++++ .+..+..++|.+++++
T Consensus 253 ~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~ 332 (608)
T PF10345_consen 253 QFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIE 332 (608)
T ss_pred HHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHH
Confidence 2 10 00 111111 112222 2334444455555544
Q ss_pred -HH-HCCCCCC--------HHHHHHHHH---------HHHhcCCHHHHHHHHHHHHhCCC-CCC-----HHHHHH--HHH
Q 048807 539 -LK-EAGFRPD--------IVCYNHLIS---------GFCKKKMLDKAYEVLQEMEDIGM-TPN-----SVTYNT--LIS 591 (757)
Q Consensus 539 -~~-~~g~~~~--------~~~~~~li~---------~~~~~g~~~~A~~~~~~~~~~~~-~~~-----~~~~~~--li~ 591 (757)
.. .....+. ...|...+. ..+-.+++..|...+..+.+..- .|+ ...+.. .+-
T Consensus 333 ~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl 412 (608)
T PF10345_consen 333 KLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGL 412 (608)
T ss_pred HhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHH
Confidence 33 1111111 112222222 22457889999999998875421 111 122222 233
Q ss_pred HHHHcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHH--HHHHHhcCC--HHH--HHHHHHHhhhcCCCCCCH--H
Q 048807 592 FLSKSGNFSAARRVLK--------KMVKEGLVPTVVTYGAL--IHAFCVNGH--VDE--AMKIFKELSSSSNVSPNT--V 655 (757)
Q Consensus 592 ~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~l--i~~~~~~g~--~~~--A~~~~~~~~~~~~~~p~~--~ 655 (757)
.+-..|+++.|...|. .....+...+..++..+ +..+...+. .++ +.++++.+.......|+. .
T Consensus 413 ~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~ 492 (608)
T PF10345_consen 413 YYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNR 492 (608)
T ss_pred HHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHH
Confidence 3456799999999997 44455544444444332 222222222 223 777777765532333333 2
Q ss_pred HHH-HHHHHHHhcC--CHHHHHHHHHHHHhC---CCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC--
Q 048807 656 IYN-ILIDSLCKNN--QVELALSLMEEMKVK---EVRPNT---NTYNAMFKGLRQKNMLDKAFKLMDRMIEHA-CHPD-- 723 (757)
Q Consensus 656 ~~~-~li~~~~~~g--~~~~A~~~~~~m~~~---g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~-- 723 (757)
++. .++.++...- ...++...+.+..+. ....+. .+++.+..-+. .|+..|..+......... -.||
T Consensus 493 ~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~ 571 (608)
T PF10345_consen 493 TAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYS 571 (608)
T ss_pred HHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 333 3344443222 223444444433321 011111 22333333333 688888776666554321 1233
Q ss_pred HHHHHHHHH-----HHHhcCCHHHHHHHHhhc
Q 048807 724 YISMEILTE-----WLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 724 ~~~~~~l~~-----~~~~~g~~~~A~~~~~~~ 750 (757)
...|..+.. .+...|+.++|....++.
T Consensus 572 ~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 572 DQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred hHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 366644433 466679999999887765
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.8 Score=49.49 Aligned_cols=133 Identities=20% Similarity=0.116 Sum_probs=66.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccc------hHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCcccc
Q 048807 297 CNALLNALGREGDFKRMNQLFTEMKENDIEPSVV------TFGTIINRLC----KLYRADEALEVFEKMIAGKETAEISV 366 (757)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~ 366 (757)
...++...+=.||-+.+++++.+..+.+--..+. .|...+..++ .....+.|.++++.+.++
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-------- 262 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-------- 262 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------
Confidence 3444555555566666666666554432111111 1222222222 234566677777777664
Q ss_pred cCCHhHHH-HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 367 EPDVIIFN-TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 367 ~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
-|+...|. .-.+.+...|++++|.+.|++.......-.+-....+--+...+.-.+++++|.+.|..+.+.
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 24444333 334556667777777777776431000111112333444555566666666666666666654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.35 Score=40.37 Aligned_cols=93 Identities=15% Similarity=0.057 Sum_probs=66.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHc
Q 048807 626 HAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTN---TYNAMFKGLRQK 702 (757)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~ 702 (757)
-+.+..|+++.|++.|.+... -.+.+...||.-..++.-+|+.++|++-+++.++..-..... .|.--...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 356778888888888888776 234566778888888888888888888888888732111222 333444566778
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 048807 703 NMLDKAFKLMDRMIEHAC 720 (757)
Q Consensus 703 g~~~~A~~~~~~~~~~g~ 720 (757)
|+-+.|..-|+.+-+.|.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 888888888888877663
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.7 Score=38.09 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=17.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048807 589 LISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCV 630 (757)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 630 (757)
++..+.+.+.......+++.+...+ ..+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3333444444444444444444433 1333444444444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=3.3 Score=39.60 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=35.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 380 LCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
-.+.|++++|.+.|+.+..+ ....+-...+--.++.++.+.+++++|+...++....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~-~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSR-HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 44667777777777777532 2222223455556666777777777777777776654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.5 Score=38.38 Aligned_cols=126 Identities=13% Similarity=0.137 Sum_probs=84.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhc
Q 048807 263 TQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKL 342 (757)
Q Consensus 263 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 342 (757)
..+|..+...+.......+++.+.+.+. .+...+|.++..|++.+ ..+..+.+.. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4577777778889999999999888874 57888999999998753 3344444442 12455566677888888
Q ss_pred CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 048807 343 YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKV-GKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK 420 (757)
Q Consensus 343 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (757)
+.++++.-++.++-. .. ..+..+... ++++.|.+.+.+. .+...|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~~-----------~~----~Al~~~l~~~~d~~~a~~~~~~~---------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDGN-----------FK----DAIVTLIEHLGNYEKAIEYFVKQ---------NNPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhcC-----------HH----HHHHHHHHcccCHHHHHHHHHhC---------CCHHHHHHHHHHHHc
Confidence 888888888877521 12 223333333 7788888877653 256677777766553
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.89 E-value=3.5 Score=38.88 Aligned_cols=205 Identities=11% Similarity=0.103 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048807 410 TYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFC 489 (757)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 489 (757)
.|..-..+|....++++|...+.+..+- ..-|...|. ....++.|.-+.+++.+. .--+..|+.-..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 4445555666677777777766665531 111111111 112233343444444332 111223444555667
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhcCCH
Q 048807 490 NVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEA---GF--RPDIVCYNHLISGFCKKKML 564 (757)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~--~~~~~~~~~li~~~~~~g~~ 564 (757)
.+|..+-|-..+++.-+. ...-++++|+.+|++.... +- ..-...+......+.+..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777766666655554331 1233444555555443221 00 00111233344445555555
Q ss_pred HHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 048807 565 DKAYEVLQEMEDI----GMTPNS-VTYNTLISFLSKSGNFSAARRVLKKMVKEG---LVPTVVTYGALIHAFCVNGHVDE 636 (757)
Q Consensus 565 ~~A~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~ 636 (757)
++|-..+.+-... .--++. ..|-..|-.|....++..|...++.--+.+ -.-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 5555444332110 001111 123333444444556666666666543321 112344455555544 3455555
Q ss_pred HHHHH
Q 048807 637 AMKIF 641 (757)
Q Consensus 637 A~~~~ 641 (757)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 44443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.87 E-value=2.6 Score=44.11 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=23.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048807 589 LISFLSKSGNFSAARRVLKKMVKEGLVP-TVVTYGALIHAFCVNGHVDEAMKIFKEL 644 (757)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 644 (757)
+....-+.|+.++|++.+++|++..... .......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3333444445555555554444332111 1223344444444444444444444444
|
The molecular function of this protein is uncertain. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.53 Score=45.27 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-C-ccchHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPL--EAASCNALLNALGREGDFKRMNQLFTEMKENDIE-P-SVVTFGTII 336 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li 336 (757)
.|+.-+.. .+.|++.+|.+.|...++..+.. ...++-.|...+...|+++.|..+|..+.+.-.. | -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 56665554 47888999999999999986541 2457778999999999999999999999886211 1 134566777
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 048807 337 NRLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~ 358 (757)
....+.|+.++|...|+++++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8889999999999999999986
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.092 Score=35.18 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALL 301 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 301 (757)
++..+...|.+.|++++|+++|+++++..+. |...|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 4566777777777777777777777777654 666665553
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.85 Score=44.73 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=109.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHHcCC
Q 048807 523 LCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTY----NTLISFLSKSGN 598 (757)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~ 598 (757)
....|++.+|-..++++++. .+.|..+++..=.+|...|+.+.-...++++... ..+|...| ..+.-++..+|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34578888888888888876 4557888888888888899988888888888754 13343333 333445567899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC--CCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 599 FSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVS--PNTVIYNILIDSLCKNNQVELALSL 676 (757)
Q Consensus 599 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~ 676 (757)
+++|.+.-++..+.+ +.|.-...++.+.+...|+..++.++..+-....... .-...|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999998888765 3466677788888888899999998877655421100 0112233333445566889999999
Q ss_pred HHHHHh
Q 048807 677 MEEMKV 682 (757)
Q Consensus 677 ~~~m~~ 682 (757)
|+.-+-
T Consensus 270 yD~ei~ 275 (491)
T KOG2610|consen 270 YDREIW 275 (491)
T ss_pred HHHHHH
Confidence 987664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=4.3 Score=38.71 Aligned_cols=202 Identities=16% Similarity=0.117 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048807 478 AVTYTILITAFCNVNNFQEAIKWFDDMSRA-GCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLIS 556 (757)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 556 (757)
...+......+...+++..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344445555555566666666555555431 123344445555555555666666666666655543222 111222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048807 557 -GFCKKKMLDKAYEVLQEMEDIGM--TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGH 633 (757)
Q Consensus 557 -~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 633 (757)
.+...|+++.|...+.+...... ......+......+...++.++|...+.+............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56677777777777777755321 012333444444466677888888888887765311135667777777777788
Q ss_pred HHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 634 VDEAMKIFKELSSSSNVSPN-TVIYNILIDSLCKNNQVELALSLMEEMKVK 683 (757)
Q Consensus 634 ~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 683 (757)
+++|...+..... ..|+ ...+..+...+...+..+++...+.+....
T Consensus 218 ~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALE---LDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHh---hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888887766 2233 334455555555667788888888887764
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.63 E-value=5.4 Score=39.84 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=14.0
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 048807 698 GLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 698 ~~~~~g~~~~A~~~~~~~~ 716 (757)
.+.+.+++++|.+.|+-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4567788888888887554
|
It is also involved in sporulation []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.95 Score=48.15 Aligned_cols=159 Identities=16% Similarity=0.113 Sum_probs=73.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 378 DGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHG 457 (757)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 457 (757)
....-.|+++++.++.+.-. ....++ ....+.++..+.+.|..+.|+++-..-. .-.....+.|
T Consensus 269 k~av~~~d~~~v~~~i~~~~--ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg 332 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASN--LLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLG 332 (443)
T ss_dssp HHHHHTT-HHH-----HHHH--TGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT
T ss_pred HHHHHcCChhhhhhhhhhhh--hcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcC
Confidence 34444666666666664221 011111 3345666666666666666665543221 1223344566
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 048807 458 RINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVS 537 (757)
Q Consensus 458 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 537 (757)
+++.|.++.++. .+...|..|.+...++|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+
T Consensus 333 ~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 333 NLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp -HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred CHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 666665543221 2555666666666666666666666665432 3444555555666555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 538 KLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQE 573 (757)
Q Consensus 538 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (757)
.....|- ++....++.-.|+.++..+++.+
T Consensus 398 ~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 398 IAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444431 33333444444555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.6 Score=44.89 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=24.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 624 LIHAFCVNGHVDEAMKIFKELSSSSNVSPNT-VIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
|..++...|++++|..+|..+.+.++-.|.. ..+.-|.....+.|+.++|...|++..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444444444444444444444322222221 2333344444444444444444444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.59 Score=39.08 Aligned_cols=92 Identities=21% Similarity=0.144 Sum_probs=50.4
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP--NAVTYNCLI 415 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~li 415 (757)
++...|+++.|++.|.+.+.. .+....+||.-..++--.|+.++|++-+++..+ ..|... --.+|..-.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-------~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale--Lag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-------APERASAYNNRAQALRLQGDDEEALDDLNKALE--LAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-------cccchHhhccHHHHHHHcCChHHHHHHHHHHHH--hcCccchHHHHHHHHHH
Confidence 345566777777777766654 355666677777777767777777666666542 222111 112233333
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC
Q 048807 416 NGFCKSGNIEKGLELFHLMKQEG 438 (757)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g 438 (757)
..|...|+.+.|..=|+..-+.|
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhC
Confidence 34555555555555555554443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.21 E-value=11 Score=41.82 Aligned_cols=176 Identities=15% Similarity=0.111 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHHcCChhHHHHHHHHHHH-------CCCCCccchHHHHHHHHHhc
Q 048807 275 TDEAWDVLHVLMKFDAPLEAASCNALLNA-----LGREGDFKRMNQLFTEMKE-------NDIEPSVVTFGTIINRLCKL 342 (757)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~ 342 (757)
..+|.++++...+.| +...-..++.. +....|.+.|..+|+.+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456677777776665 33333333322 3345677777777777766 44 333555666666653
Q ss_pred C-----ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 343 Y-----RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKV---GKQEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 343 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
. +.+.|..++.+..+.+ .|+... .+...|... .+...|.++|.... ..|. ...+-.+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-------~~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa---~~G~---~~A~~~l 366 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-------NPDAQY--LLGVLYETGTKERDYRRAFEYYSLAA---KAGH---ILAIYRL 366 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-------CchHHH--HHHHHHHcCCccccHHHHHHHHHHHH---HcCC---hHHHHHH
Confidence 3 4566788887777665 333322 233333322 34567777777664 3332 2222222
Q ss_pred HHHHH----HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 048807 415 INGFC----KSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKG 473 (757)
Q Consensus 415 i~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 473 (757)
..+|. -..+.+.|..++.+..+.| .|...--...+..+.. +..+.+.-.+..+.+.|
T Consensus 367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 367 ALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 22222 2235677777777777766 2222222222233333 55555555555555544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.08 E-value=3.2 Score=35.04 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=20.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 048807 417 GFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKG 473 (757)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 473 (757)
...++|+-++-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++.+.|
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333444444444444444321 12334444444444444444444444444444443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.01 E-value=2 Score=45.82 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048807 551 YNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCV 630 (757)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 630 (757)
.+.++.-+.+.|..+.|+++-.. ..+ -.....+.|+++.|.++.++. ++...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 44555555555555555544322 111 112234455555555443321 244556666666666
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048807 631 NGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFK 710 (757)
Q Consensus 631 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 710 (757)
+|+++-|.+.|.+... |..|.-.|.-.|+.+.-.++.+.....| -++....++.-.|+.++..+
T Consensus 360 ~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp TTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred cCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 6666666666655433 4455555555555555555554444432 12333333444455555554
Q ss_pred HHHH
Q 048807 711 LMDR 714 (757)
Q Consensus 711 ~~~~ 714 (757)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.00 E-value=12 Score=41.51 Aligned_cols=177 Identities=14% Similarity=0.161 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHHcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHh
Q 048807 423 NIEKGLELFHLMKQEGVTPNVVTLNTLVDG-----MCRHGRINSAVEFFQEVTR-------KGLCANAVTYTILITAFCN 490 (757)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~ 490 (757)
+...|.++++...+.| +......+..+ +....+.+.|..+|..+.+ .| +......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 5678888888888876 33333333332 3355688888888888876 44 33345566666665
Q ss_pred cC-----CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---
Q 048807 491 VN-----NFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQA---GRMNDASLVVSKLKEAGFRPDIVCYNHLISGFC--- 559 (757)
Q Consensus 491 ~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~--- 559 (757)
.. +.+.|+.++.+..+.| .|+.. ..+...+... .+...|.++|....+.|.. ..+-.+..+|.
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-~~~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-NPDAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGL 374 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-CchHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCC
Confidence 43 5566777777777766 22222 2222222222 3456777777777776633 22222222221
Q ss_pred -hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048807 560 -KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEG 613 (757)
Q Consensus 560 -~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 613 (757)
-..+...|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+.+.|
T Consensus 375 gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2335667777777777766 2221111112222333 66666666665555544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.99 E-value=14 Score=41.94 Aligned_cols=228 Identities=14% Similarity=0.092 Sum_probs=125.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHH
Q 048807 522 GLCQAGRMNDASLVVSKLKEAGFRPDI-------VCYNHLIS-GFCKKKMLDKAYEVLQEMEDI----GMTPNSVTYNTL 589 (757)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~g~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l 589 (757)
......++++|..+..++...-..|+. ..++.+-. .....|++++|.++-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 345678888988888776554222221 13444332 234578899999888877654 123345667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH---H--HHHHHhcCC--HHHHHHHHHHhhhcC--CCC---CCHHHH
Q 048807 590 ISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGA---L--IHAFCVNGH--VDEAMKIFKELSSSS--NVS---PNTVIY 657 (757)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~---l--i~~~~~~g~--~~~A~~~~~~~~~~~--~~~---p~~~~~ 657 (757)
..+..-.|++++|..+..+..+..-.-++..+.. + ...+..+|+ +.+....|....... ..+ +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7888888999999998887765422233333322 2 223456673 334444444433310 011 112344
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCCHHHHHHH
Q 048807 658 NILIDSLCKN-NQVELALSLMEEMKVKEVRPNTNT--YNAMFKGLRQKNMLDKAFKLMDRMIEHAC----HPDYISMEIL 730 (757)
Q Consensus 658 ~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~g~----~p~~~~~~~l 730 (757)
..+..++.+. +...+|..-+.--......|-... +..|+.+....|+.++|...+.++..... .++......+
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4555555542 222333333333222222222222 23677888899999999999998876422 3333444444
Q ss_pred HHHHH--hcCCHHHHHHHHhh
Q 048807 731 TEWLS--EAGQTEKLKKFVQG 749 (757)
Q Consensus 731 ~~~~~--~~g~~~~A~~~~~~ 749 (757)
+.... ..|+.+++..+..+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 44432 45888888887766
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.98 E-value=7.4 Score=38.87 Aligned_cols=17 Identities=6% Similarity=0.026 Sum_probs=13.5
Q ss_pred HHHHhcCCHHHHHHHHh
Q 048807 732 EWLSEAGQTEKLKKFVQ 748 (757)
Q Consensus 732 ~~~~~~g~~~~A~~~~~ 748 (757)
..+.+.+++++|.++++
T Consensus 254 ~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHhhcCHHHHHHHHH
Confidence 34567799999999987
|
It is also involved in sporulation []. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.95 E-value=9.5 Score=40.06 Aligned_cols=88 Identities=9% Similarity=-0.010 Sum_probs=62.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCChhHHHHHHHHHH
Q 048807 243 LVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNA-LGREGDFKRMNQLFTEMK 321 (757)
Q Consensus 243 ~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~ 321 (757)
++.++...... +..|+..|...+..+-+.+.+.+.-.+|..|....+. ++..|-.-..- |-.+-+++.|..+|..-+
T Consensus 90 Iv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 34444443333 5669999999998887888899999999999998765 67777655544 334445999999999988
Q ss_pred HCCCCCccchHH
Q 048807 322 ENDIEPSVVTFG 333 (757)
Q Consensus 322 ~~g~~p~~~~~~ 333 (757)
+.+ +.++..|.
T Consensus 168 R~n-pdsp~Lw~ 178 (568)
T KOG2396|consen 168 RFN-PDSPKLWK 178 (568)
T ss_pred hcC-CCChHHHH
Confidence 874 22344443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.31 E-value=21 Score=41.89 Aligned_cols=134 Identities=16% Similarity=0.209 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 553 HLISGFCKKKMLDKAYEVLQEMEDIGMTPNSV----TYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAF 628 (757)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 628 (757)
..++.--+.|.+.+|..++ .|+.. .|.+..+.+...+.+++|.-.|+..-+ ..-.+.+|
T Consensus 913 e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~ 975 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAY 975 (1265)
T ss_pred HHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHH
Confidence 3334444555555555544 33433 344444445556677777666665432 11235567
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048807 629 CVNGHVDEAMKIFKELSSSSNVSPNTV--IYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLD 706 (757)
Q Consensus 629 ~~~g~~~~A~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 706 (757)
..+|++++|+.+..++.. + .+.. +-..|+.-+..+++.-+|-++..+.... | .-.+..|++.-.++
T Consensus 976 ~~~~dWr~~l~~a~ql~~--~--~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSE--G--KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWE 1043 (1265)
T ss_pred HHhccHHHHHHHHHhhcC--C--HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHH
Confidence 777888888877776654 1 2222 2356777777788888887777776542 2 22334455666677
Q ss_pred HHHHHHHHH
Q 048807 707 KAFKLMDRM 715 (757)
Q Consensus 707 ~A~~~~~~~ 715 (757)
+|++.....
T Consensus 1044 eAlrva~~~ 1052 (1265)
T KOG1920|consen 1044 EALRVASKA 1052 (1265)
T ss_pred HHHHHHHhc
Confidence 776655443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.28 E-value=3.9 Score=35.42 Aligned_cols=77 Identities=16% Similarity=0.092 Sum_probs=56.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPL--EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
-.....+.|++++|.+.|+.+..+-+.. ...+-..++.+|.+.|++++|...+++.++....--.+-|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 4455568899999999999998875432 3456778889999999999999999999987532223456555555544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.16 E-value=7.1 Score=41.06 Aligned_cols=150 Identities=12% Similarity=0.047 Sum_probs=86.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 048807 448 TLVDGMCRHGRINSAVEFFQEVTRKGLCANA-VTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQA 526 (757)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 526 (757)
.++.-.-+..+.+.-.+.-.++++. .||. ..|..|. --......+|.++|++..+.| ...+. ......
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAg----E~~lg---~s~~~~ 241 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILLA--EEEASTIVEAEELLRQAVKAG----EASLG---KSQFLQ 241 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHH----HHhhc---hhhhhh
Confidence 3444445566666666666666665 2332 2222222 223455788888888887753 11110 000000
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 048807 527 GRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTP-NSVTYNTLISFLSKSGNFSAARRV 605 (757)
Q Consensus 527 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 605 (757)
. .-..++........+-...-..+..+.-+.|+.++|.+.+++|.+..... +......|+.++...+.+.++..+
T Consensus 242 ~----~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 242 H----HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred c----ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 0 00111222222222333344556667778999999999999998754221 334677899999999999999999
Q ss_pred HHHHHhC
Q 048807 606 LKKMVKE 612 (757)
Q Consensus 606 ~~~m~~~ 612 (757)
+.+.-+.
T Consensus 318 L~kYdDi 324 (539)
T PF04184_consen 318 LAKYDDI 324 (539)
T ss_pred HHHhccc
Confidence 9987543
|
The molecular function of this protein is uncertain. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.29 Score=32.74 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHH
Q 048807 331 TFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLI 377 (757)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li 377 (757)
++..+...|...|++++|+++|+++++.. |.|...|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-------P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-------PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCCHHHHHHhh
Confidence 45667777777788888888887777764 55566655543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.93 E-value=5.2 Score=37.02 Aligned_cols=161 Identities=17% Similarity=0.219 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
-+.++|-|.--+...|+++.|.+.|+...+.++.-+-...|.-|..| --|+++-|.+-|.+.-..+ +.|+ |.++--
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D-~~DP--fR~LWL 173 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDD-PNDP--FRSLWL 173 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcC-CCCh--HHHHHH
Confidence 45678888888889999999999999999988765544555555444 3589999988887776664 2232 222221
Q ss_pred HH-HhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC-------HH
Q 048807 338 RL-CKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN-------AV 409 (757)
Q Consensus 338 ~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~ 409 (757)
-+ -..-++.+|..-+.+-.+. .|..-|...|-.|. .|++.+ +.+++++. .+...+ ..
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~---------~d~e~WG~~iV~~y-LgkiS~-e~l~~~~~----a~a~~n~~~Ae~LTE 238 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEK---------SDKEQWGWNIVEFY-LGKISE-ETLMERLK----ADATDNTSLAEHLTE 238 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHh---------ccHhhhhHHHHHHH-HhhccH-HHHHHHHH----hhccchHHHHHHHHH
Confidence 11 2234667776555443322 23334433333322 122221 22334432 111111 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 410 TYNCLINGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
||.-+...+...|+.++|..+|+..+..
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 6777888888888888888888877765
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.98 Score=43.24 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCC----------------HHHH
Q 048807 615 VPTVVTYGALIHAFCVN-----GHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQ----------------VELA 673 (757)
Q Consensus 615 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------------~~~A 673 (757)
+-|..+|.+.+..+... +.++=....++.|.+ +|+..|..+|+.|++.+-+..- -+=+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~ 142 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCA 142 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHH
Confidence 34677777777776543 456666666777777 7888888888888877754221 1224
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 674 LSLMEEMKVKEVRPNTNTYNAMFKGLRQKN 703 (757)
Q Consensus 674 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 703 (757)
++++++|...|+.||.++-..|+.++.+.|
T Consensus 143 I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 143 IKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 455555555555555555555555554444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.61 E-value=20 Score=39.91 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=69.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 376 LIDGLCKVGKQEEALGLIEQMRLRLQKGCMP---NAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDG 452 (757)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (757)
=|+.+.+.+.+++|++..+... |..| -...+...|..+...|++++|-...-.|... +..-|.--+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~-----~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~ 432 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASI-----GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFK 432 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhcc-----CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHH
Confidence 3677888999999999887652 3333 3456788899999999999999888888765 56666666666
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCN 490 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 490 (757)
+...++...... .+.......+..+|..++..+..
T Consensus 433 f~e~~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 433 FAELDQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccccccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 666666543322 22222222456677777766665
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.7 Score=39.83 Aligned_cols=99 Identities=13% Similarity=0.147 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHH---H
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE--AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFG---T 334 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~ 334 (757)
..+..++..|++.|+.++|.+.|.++.+....+. ...+-.+|......|++..+.....+....--.+...... .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4677899999999999999999999988644332 4577888899999999999998888775532111212222 2
Q ss_pred HHH--HHHhcCChhHHHHHHHHHHhC
Q 048807 335 IIN--RLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 335 li~--~~~~~g~~~~A~~~~~~~~~~ 358 (757)
... .+...+++.+|-+.|-.....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 222 234578999999998877543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.37 E-value=2.6 Score=40.50 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=54.7
Q ss_pred CCCHhhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048807 510 SADSVVYFTLISGLCQA-----GRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSV 584 (757)
Q Consensus 510 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 584 (757)
..|..+|.+.+..+... +.++-....++.|.+-|+.-|..+|+.|++.+-+-.-... .+|++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~----------- 130 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQK----------- 130 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHH-----------
Confidence 34566666666665432 4455555556667777777777777777766543221100 00000
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048807 585 TYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGH 633 (757)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 633 (757)
..-.|- .+-+-+++++++|...|+.||..+-..|++++.+.+.
T Consensus 131 ----~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 ----VFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ----HHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 000010 1223455666666666666666666666666655544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.27 E-value=1.2 Score=43.51 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCccchHHH
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKE-----NDIEPSVVTFGT 334 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 334 (757)
.+++.++..+..+|+.+.+...+++....++. +...|..++.+|.+.|+...|+..|+++.. .|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 47888999999999999999999999999876 889999999999999999999999998876 477777666554
Q ss_pred HHHH
Q 048807 335 IINR 338 (757)
Q Consensus 335 li~~ 338 (757)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.22 E-value=9.7 Score=35.33 Aligned_cols=180 Identities=16% Similarity=0.057 Sum_probs=100.8
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHH
Q 048807 273 GKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVF 352 (757)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 352 (757)
|-..-|.--|.+.+...|. -+.+||-+.-.+...|+++.|.+.|+...+.+.. ...+...-.-.+.--|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHH
Confidence 4444555555665555433 4678999999999999999999999999987622 2333322223344578999999888
Q ss_pred HHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Q 048807 353 EKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK-SGNIEKGLELF 431 (757)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~ 431 (757)
.+.-+.+. -.|=...|--++ ...-++.+|..-+.+- -. ..|..-|...|-.|.- .=..+ .++
T Consensus 157 ~~fYQ~D~-----~DPfR~LWLYl~---E~k~dP~~A~tnL~qR----~~--~~d~e~WG~~iV~~yLgkiS~e---~l~ 219 (297)
T COG4785 157 LAFYQDDP-----NDPFRSLWLYLN---EQKLDPKQAKTNLKQR----AE--KSDKEQWGWNIVEFYLGKISEE---TLM 219 (297)
T ss_pred HHHHhcCC-----CChHHHHHHHHH---HhhCCHHHHHHHHHHH----HH--hccHhhhhHHHHHHHHhhccHH---HHH
Confidence 88777651 122223343333 2344566665544332 11 2344445444333322 11112 233
Q ss_pred HHHHhCCCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 432 HLMKQEGVTPN-------VVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 432 ~~m~~~g~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
+.+... -.-+ ..||--+..-+...|+.++|..+|+-.+..
T Consensus 220 ~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 220 ERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 333321 1111 235555666677777777777777766654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.41 Score=30.32 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 691 TYNAMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
+|..|+.+|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677788888888888888888755
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.27 Score=30.71 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=17.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 048807 283 HVLMKFDAPLEAASCNALLNALGREGDFKRMN 314 (757)
Q Consensus 283 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 314 (757)
++.++.+|. +..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 344444433 5666666666666666666654
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.30 E-value=19 Score=40.50 Aligned_cols=59 Identities=22% Similarity=0.161 Sum_probs=35.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-------hHHHHHHHHHHHCC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDF-------KRMNQLFTEMKEND 324 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g 324 (757)
+|-.+.|+|++++|.++....... .......+-..+..|....+. ++...-|.+..+..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 566678999999999998544332 233445666777777664322 34555666666543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.29 E-value=16 Score=41.08 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhC
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGN-------IEKGLELFHLMKQE 437 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 437 (757)
.-.+|-.+.++|.+++|.++..+. ..........+-..+..|....+ -++...-|++....
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~----~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANEN----RNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHT----GGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHh----hhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 345777888999999999999665 33344455566777777766432 23455555655554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.03 E-value=11 Score=33.50 Aligned_cols=50 Identities=18% Similarity=0.073 Sum_probs=22.8
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 630 VNGHVDEAMKIFKELSSSSNVSPNTVI-YNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 630 ~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
+.++.+++..++..+.- +.|.... -..-...+...|++.+|+.+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 34455555555555543 2232221 11222334455555555555555544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.81 E-value=12 Score=33.52 Aligned_cols=123 Identities=15% Similarity=0.192 Sum_probs=50.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHhcCCH
Q 048807 559 CKKKMLDKAYEVLQEMEDIGMTPNSV-TYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVV-TYGAL--IHAFCVNGHV 634 (757)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l--i~~~~~~g~~ 634 (757)
.+.++.++|+.-|..+.+.|...-.+ ............|+...|...|+++-.....|-.. -...| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455555555555555544321111 11112223344555555555555555433222221 11111 1122344555
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 635 DEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 635 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
++.....+.+.. .+.+-....-..|.-+-.+.|++.+|.+.|..+.+
T Consensus 149 ~dV~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 554444444433 22222222334444444455555555555555443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.74 E-value=1.2 Score=43.89 Aligned_cols=91 Identities=15% Similarity=0.074 Sum_probs=68.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCCh
Q 048807 266 ITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRA 345 (757)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 345 (757)
.+.|.++|++++|+..|...+...+. |.+++..-..+|.+...|..|..=....+..+ ..-...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 45789999999999999998887644 88999999999999999998888777777653 11223344444444556777
Q ss_pred hHHHHHHHHHHhC
Q 048807 346 DEALEVFEKMIAG 358 (757)
Q Consensus 346 ~~A~~~~~~~~~~ 358 (757)
++|.+-++.++..
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 7777777777763
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.70 E-value=19 Score=35.86 Aligned_cols=233 Identities=13% Similarity=0.049 Sum_probs=119.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCCCHHHHH
Q 048807 477 NAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRM----NDASLVVSKLKEAGFRPDIVCYN 552 (757)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~g~~~~~~~~~ 552 (757)
|..+....+..+...|. +++...+..+... +|...-...+.++.+.|+. .++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44444444444444443 2233333333322 2444444455555555542 3455555544332 33444444
Q ss_pred HHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 553 HLISGFCKKKML-----DKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHA 627 (757)
Q Consensus 553 ~li~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 627 (757)
..+.++...+.. ..+...+..... .++..+-...+.++.+.++ ++|...+-.+++. +|..+....+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 444444443321 223333333332 2355555566666666665 4566666666653 455555555555
Q ss_pred HHhcC-CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048807 628 FCVNG-HVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLD 706 (757)
Q Consensus 628 ~~~~g-~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 706 (757)
+...+ ...++...+..+.. .+|..+-...+.++.+.|+ .+|+..+-+..+.+ + .....+.++.+.|..
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 55543 23455555555554 2456666677777777777 45666666665532 2 234566777777774
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 048807 707 KAFKLMDRMIEHACHPDYISMEILTEWLS 735 (757)
Q Consensus 707 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 735 (757)
+|+..+.++.+. .||..+-...+.+|.
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 677777777753 456655444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.49 E-value=2.9 Score=41.00 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 048807 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVK-----EGLVPTVVTYGA 623 (757)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 623 (757)
.++..++..+...|+.+.+.+.++++.+.. +-|...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356677777888888888888888888776 66778888888888888888888888887765 366676665554
Q ss_pred HHHH
Q 048807 624 LIHA 627 (757)
Q Consensus 624 li~~ 627 (757)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.35 E-value=0.73 Score=28.53 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 691 TYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
+|..++.++...|++++|+..++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666666666666666666666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.27 E-value=12 Score=32.60 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=51.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 376 LIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR 455 (757)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (757)
-.....+.|++++|.+.|+.+..+...| +-...+-..++.+|.+.+++++|...+++.++.....-...|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3344557788888888888885432222 223455667788888888888888888888876433333445555555544
Q ss_pred c
Q 048807 456 H 456 (757)
Q Consensus 456 ~ 456 (757)
.
T Consensus 95 ~ 95 (142)
T PF13512_consen 95 Y 95 (142)
T ss_pred H
Confidence 3
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.22 E-value=4.9 Score=36.86 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHH--
Q 048807 619 VTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT--VIYNILIDSLCKNNQVELALSLMEEMKVKEVRP-NTNTYN-- 693 (757)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~-- 693 (757)
..+..+...|++.|+.++|++.|.++.+ +...+.. ..+..+|......|++..+.....+....--.+ |...-+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3456667777777777777777777766 4433333 245666677777777777777766665421111 111111
Q ss_pred HHHH--HHHHcCCHHHHHHHHHHHH
Q 048807 694 AMFK--GLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 694 ~l~~--~~~~~g~~~~A~~~~~~~~ 716 (757)
.... .+...|++.+|-+.|-...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 1111 1234566777776666654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.13 E-value=24 Score=36.08 Aligned_cols=78 Identities=8% Similarity=0.071 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHH---cCCHH
Q 048807 311 KRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCK---VGKQE 387 (757)
Q Consensus 311 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~ 387 (757)
+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.+++++... +.+...|...++.... .-.++
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-------~~~~~LW~~yL~~~q~~~~~f~v~ 119 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-------PGSPELWREYLDFRQSNFASFTVS 119 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHhccCcHH
Confidence 45567778877773 4456667777777788888888888888888764 4567778777776554 22455
Q ss_pred HHHHHHHHH
Q 048807 388 EALGLIEQM 396 (757)
Q Consensus 388 ~A~~~~~~~ 396 (757)
+...+|.+.
T Consensus 120 ~~~~~y~~~ 128 (321)
T PF08424_consen 120 DVRDVYEKC 128 (321)
T ss_pred HHHHHHHHH
Confidence 666666554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.66 Score=29.34 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHH
Q 048807 297 CNALLNALGREGDFKRMNQLFTE 319 (757)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~~~~~ 319 (757)
|+.|...|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44445555555555555555554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.89 E-value=37 Score=37.95 Aligned_cols=56 Identities=20% Similarity=0.222 Sum_probs=23.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 048807 266 ITRFCRKGKTDEAWDVLHVLMKFDAP-LEAASCNALLNALGREGDFKRMNQLFTEMK 321 (757)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 321 (757)
|+.+.+.+.+++|+..-+.....-.. .-...+...|..+.-.|++++|-...-.|.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 44445555555555444333221100 012344444444444555555544444444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.57 E-value=25 Score=35.37 Aligned_cols=147 Identities=13% Similarity=0.220 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCC--
Q 048807 565 DKAYEVLQEMEDIGMTPNSVTYNTLISFLSK--S----GNFSAARRVLKKMVKEGL---VPTVVTYGALIHAFCVNGH-- 633 (757)
Q Consensus 565 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~-- 633 (757)
++...+++.+.+.|+..+..+|-+....... . ....+|..+|+.|.+... .++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455667777777777666555443222222 1 235667778888877632 2344555555433 2222
Q ss_pred --HHHHHHHHHHhhhcCCCCCCHH-HHHHHHHHHHhc-C--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048807 634 --VDEAMKIFKELSSSSNVSPNTV-IYNILIDSLCKN-N--QVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDK 707 (757)
Q Consensus 634 --~~~A~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~-g--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 707 (757)
.+....+|+.+.+ .|...+-. -+.+-+-+++.. . ...++.++++.+.+.|+++....|..++-...-.+..++
T Consensus 157 ~l~~~~E~~Y~~L~~-~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 157 ELAERMEQCYQKLAD-AGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 3556666766666 55554332 222222222221 1 145677777777777777777766655543333333324
Q ss_pred HHHHHHH
Q 048807 708 AFKLMDR 714 (757)
Q Consensus 708 A~~~~~~ 714 (757)
..+-+.+
T Consensus 236 ~~~~i~e 242 (297)
T PF13170_consen 236 IVEEIKE 242 (297)
T ss_pred HHHHHHH
Confidence 3333333
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.51 E-value=25 Score=35.34 Aligned_cols=131 Identities=19% Similarity=0.284 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCC---
Q 048807 531 DASLVVSKLKEAGFRPDIVCYNHLISGFCK--KK----MLDKAYEVLQEMEDIGM---TPNSVTYNTLISFLSKSGN--- 598 (757)
Q Consensus 531 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~--- 598 (757)
+...+++.+.+.|+.-+..+|-+....... .. ....|..+|+.|.+... .++..++..|+.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 345566777777777666655543333322 11 34567778888877642 2344455555443 2222
Q ss_pred -HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhc-CC--HHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 048807 599 -FSAARRVLKKMVKEGLVPTVV-TYGALIHAFCVN-GH--VDEAMKIFKELSSSSNVSPNTVIYNILIDSL 664 (757)
Q Consensus 599 -~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~-g~--~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~ 664 (757)
.+.+..+|+.+.+.|+..+.. -+.+-+-++... .. ...+..+++.+.+ .+++.....|..++-..
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHHH
Confidence 356667777777767665322 222222222221 11 4467777777777 57777766666555433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.55 Score=29.28 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=24.1
Q ss_pred HHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHH
Q 048807 352 FEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEAL 390 (757)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 390 (757)
|++.++.+ |.|..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~-------P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-------PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-------CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555554 667888888888888888888875
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.27 E-value=0.98 Score=27.82 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 691 TYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
.|..+..++...|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666666666666666664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.04 E-value=34 Score=36.27 Aligned_cols=182 Identities=11% Similarity=0.138 Sum_probs=114.5
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048807 510 SADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTL 589 (757)
Q Consensus 510 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 589 (757)
+.|.....+++..+.++..+.-.+.+..+|.+-| -+...|..++..|... ..+.-..+++++.+..+ .|.+.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 3455666777777777777777777777777764 3566777788888777 55667777777777653 344444555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 048807 590 ISFLSKSGNFSAARRVLKKMVKEGLVP--T---VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSL 664 (757)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p--~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~ 664 (757)
+..|.+ ++.+.+..+|.++...-++. + ...|.-+... -..+.+.-..+...+....|...-.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555555 77777777887776542210 1 1233333321 13456667777777776555555566666777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 665 CKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGL 699 (757)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 699 (757)
....++++|++++..+.+.. ..|...-..++..+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 78888888888888777643 23443334444444
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.95 E-value=42 Score=37.28 Aligned_cols=30 Identities=17% Similarity=0.332 Sum_probs=23.8
Q ss_pred CCccchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 048807 326 EPSVVTFGTIINRLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 326 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 358 (757)
.|| |..+..+|.-..+.+.+.++++++.+.
T Consensus 210 ~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 210 SPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred CCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 455 445677888889999999999999874
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.46 E-value=28 Score=34.66 Aligned_cols=233 Identities=12% Similarity=0.071 Sum_probs=108.7
Q ss_pred cCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHhCCCCCC
Q 048807 367 EPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNI----EKGLELFHLMKQEGVTPN 442 (757)
Q Consensus 367 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~ 442 (757)
.+|.......+..+...|..+ +...+..+. ..+|...-...+.++.+.|+. +++...+..+... .++
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll------~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d 104 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQD-VFRLAIELC------SSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKS 104 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcch-HHHHHHHHH------hCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCC
Confidence 345556666666666666533 333333331 134555555666666666652 4566666665333 234
Q ss_pred HHHHHHHHHHHHHcCCh-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 048807 443 VVTLNTLVDGMCRHGRI-----NSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYF 517 (757)
Q Consensus 443 ~~~~~~li~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 517 (757)
..+-...+.++...+.. ..+...+...... ++..+-...+.++.+.++ ++++..+-.+++. +|..+-.
T Consensus 105 ~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~ 177 (280)
T PRK09687 105 ACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRN 177 (280)
T ss_pred HHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHH
Confidence 44444444444443321 1223333222222 244444455555555554 3455555555542 2333444
Q ss_pred HHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048807 518 TLISGLCQAG-RMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKS 596 (757)
Q Consensus 518 ~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 596 (757)
..+.++.+.+ ....+...+..+.. .++...-...+.++.+.|+ ..|...+-+..+.+ + .....+.++...
T Consensus 178 ~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~i 248 (280)
T PRK09687 178 WAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGEL 248 (280)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhc
Confidence 4444444332 12344444444443 2345555555556666555 34444444444432 2 123445555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 597 GNFSAARRVLKKMVKEGLVPTVVTYGALIHA 627 (757)
Q Consensus 597 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 627 (757)
|+. +|...+.++.+. .||..+-...+.+
T Consensus 249 g~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 249 GDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred CCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 553 455556555543 2344444333333
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.33 E-value=23 Score=33.44 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=16.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCC
Q 048807 451 DGMCRHGRINSAVEFFQEVTRKGLC 475 (757)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~~~~~~ 475 (757)
..-...+++.+|+++|+++......
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344567777777777777765544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.21 E-value=19 Score=32.38 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhH
Q 048807 244 VGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDE 277 (757)
Q Consensus 244 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 277 (757)
.++...+.+.|++++...+..+|+.+.+.|++..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444444445555555555555555555554433
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.20 E-value=3.9 Score=43.70 Aligned_cols=97 Identities=15% Similarity=0.243 Sum_probs=44.6
Q ss_pred HcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 048807 382 KVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINS 461 (757)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 461 (757)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+-+.
T Consensus 649 ~lgrl~iA~~la~e~~---------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN---------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hcCcHHHHHHHHHhhc---------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence 4555555555544431 444455555555555555555555554332 3333444444444443
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048807 462 AVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFD 502 (757)
Q Consensus 462 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (757)
...+-....+.|.. |.-.-+|...|+++++.+++.
T Consensus 711 l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 711 LAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 33333333333321 112223444555555555544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.16 E-value=27 Score=34.11 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 048807 658 NILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE-----HACHPDYIS 726 (757)
Q Consensus 658 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~ 726 (757)
+.....|..+|.+.+|.++.++.+... +-+...|-.++..+...|+--.|.+.++++.+ .|+..|..+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 444566777888888888887777642 34566677777777778877777777766642 355555433
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=88.08 E-value=52 Score=37.24 Aligned_cols=447 Identities=13% Similarity=0.107 Sum_probs=218.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHH-HcCChhHHHHHHHHHHHCCCCCccc--
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLM-KFDAPL--EAASCNALLNALG-REGDFKRMNQLFTEMKENDIEPSVV-- 330 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~--~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~-- 330 (757)
.+...|..||.+ |++.++.+. +..++| ++.++-.++..+. ...+++.|...+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 345556666654 344455555 222332 3456666776666 6788888888888775543222211
Q ss_pred ---hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHH-HHHHHHcCCHHHHHHHHHHHHHhhcCCCCC
Q 048807 331 ---TFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTL-IDGLCKVGKQEEALGLIEQMRLRLQKGCMP 406 (757)
Q Consensus 331 ---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 406 (757)
....++..+.+.+... |...+++.++.-+. .+..+-...+.-+ +..+...++...|.+.++.+.........|
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~--~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET--YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc--cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 1123455566665555 88888887764310 0011122233333 333333478888888888875432222344
Q ss_pred CHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHH--
Q 048807 407 NAVTYNCLINGFC--KSGNIEKGLELFHLMKQEG---------VTPNVVTLNTLVDGMC--RHGRINSAVEFFQEVTR-- 471 (757)
Q Consensus 407 ~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~-- 471 (757)
...++..++.+.. ..+..+++.+.+..+.... ..|...+|..+++.++ ..|+++.+...++++.+
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~ 255 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFL 255 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4555555555443 3455666777776663321 1334566666666554 46676666665554432
Q ss_pred -----CC-CC----------------------CCHH---------HHHHHHHH--HHhcCCHHHHHHHHH-------HHH
Q 048807 472 -----KG-LC----------------------ANAV---------TYTILITA--FCNVNNFQEAIKWFD-------DMS 505 (757)
Q Consensus 472 -----~~-~~----------------------~~~~---------~~~~li~~--~~~~g~~~~A~~~~~-------~m~ 505 (757)
.. .+ +... +..-++.+ ++..+..++|.+.++ +..
T Consensus 256 ~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~ 335 (608)
T PF10345_consen 256 DEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLK 335 (608)
T ss_pred HHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence 10 00 0011 11112222 223344445555544 443
Q ss_pred -HcCCCCC--------HhhHHHHHH---------HHHhcCChhHHHHHHHHHHHCCC-CCC-------HHHHHHHHHHHH
Q 048807 506 -RAGCSAD--------SVVYFTLIS---------GLCQAGRMNDASLVVSKLKEAGF-RPD-------IVCYNHLISGFC 559 (757)
Q Consensus 506 -~~~~~~~--------~~~~~~li~---------~~~~~g~~~~A~~~~~~~~~~g~-~~~-------~~~~~~li~~~~ 559 (757)
.....+. ...|...+. ..+-.+++..|....+.+....- .|+ ...+...+-.+.
T Consensus 336 ~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q 415 (608)
T PF10345_consen 336 IKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQ 415 (608)
T ss_pred ccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHH
Confidence 1111111 112222222 23456889999999988876421 111 122222223344
Q ss_pred hcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHH--HHHHHHcC--CHHH--HHHHHHHHHhC-CCCC--CHHHHH
Q 048807 560 KKKMLDKAYEVLQ--------EMEDIGMTPNSVTYNTL--ISFLSKSG--NFSA--ARRVLKKMVKE-GLVP--TVVTYG 622 (757)
Q Consensus 560 ~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~--A~~~~~~m~~~-~~~p--~~~~~~ 622 (757)
..|+++.|...|. .....+...+..++..| +..+...+ ..++ +.++++.+... .-.| +..++.
T Consensus 416 ~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~ 495 (608)
T PF10345_consen 416 STGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAY 495 (608)
T ss_pred HcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHH
Confidence 5799999999997 44455544444444332 22222222 2223 66666665542 1122 233333
Q ss_pred HH-HHHHHhcC--CHHHHHHHHHHhhhcC--CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHH
Q 048807 623 AL-IHAFCVNG--HVDEAMKIFKELSSSS--NVSPNT---VIYNILIDSLCKNNQVELALSLMEEMKVKE-VRP--NTNT 691 (757)
Q Consensus 623 ~l-i~~~~~~g--~~~~A~~~~~~~~~~~--~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~ 691 (757)
.+ +.++...- ...++...+.+..+.. ....+. .+++.+...+. .|+..+..+......... -.| ....
T Consensus 496 ~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~L 574 (608)
T PF10345_consen 496 CLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQL 574 (608)
T ss_pred HHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 33 33333222 2234544444433312 111222 23344444444 688777666655543211 122 3345
Q ss_pred HH-----HHHHHHHHcCCHHHHHHHHHHHH
Q 048807 692 YN-----AMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 692 ~~-----~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
|. .+.+.+...|+.++|.....+..
T Consensus 575 W~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 575 WHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 53 33444677899999999887764
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.97 E-value=19 Score=32.01 Aligned_cols=72 Identities=17% Similarity=0.086 Sum_probs=47.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 266 ITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
+..-.+.++.+++..+++.+.-..|. ....-..-...+.+.|++.+|..+|+++.+.+ |....-..|+..|.
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL 88 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCL 88 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHH
Confidence 33445778999999999988877554 23333333455678899999999999987763 33333344444443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.56 E-value=23 Score=32.52 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=54.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048807 625 IHAFCVNGHVDEAMKIFKELSSSSNVSPNT----VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLR 700 (757)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 700 (757)
...+...|++++|..-++.... . +.|. .+-.-|.......|.+|+|+..++...+.+. .......-++++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~-~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALA-Q--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHc-c--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 3446667777777777776554 1 1121 1122344566677778888777777654321 2223445566777
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q 048807 701 QKNMLDKAFKLMDRMIEHA 719 (757)
Q Consensus 701 ~~g~~~~A~~~~~~~~~~g 719 (757)
..|+-++|..-|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7788888888888877653
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.92 E-value=46 Score=35.35 Aligned_cols=181 Identities=13% Similarity=0.198 Sum_probs=132.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 546 PDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALI 625 (757)
Q Consensus 546 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 625 (757)
.|.....+++..+...-++.-...+-.+|.+.| .+...|..++..|... ..++-..+|+++.+..+. |++.-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 466677888999999989999999999999885 4777888999999988 668889999999987543 555555566
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 048807 626 HAFCVNGHVDEAMKIFKELSSSSNVSPN------TVIYNILIDSLCKNNQVELALSLMEEMKV-KEVRPNTNTYNAMFKG 698 (757)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~ 698 (757)
..|.+ ++...+..+|.++.. .+-|. ...|.-+...- ..+.+..+.+..++.. .|...-.+.+.-+-.-
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 65655 899999999988876 22231 12455554432 3467777777777764 4544556677777788
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048807 699 LRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSE 736 (757)
Q Consensus 699 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 736 (757)
|....++++|++++...++.. ..|.-.-..++..++.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd 251 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIENLRD 251 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHHH
Confidence 888999999999999998763 4455555566666554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.74 E-value=42 Score=34.74 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 582 NSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVP---TVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 582 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
...+|..++..+.+.|.++.|...+.++...+... +......-+...-..|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567778888888888888888888887643111 233333445556677888888888877766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.37 E-value=6.7 Score=31.10 Aligned_cols=62 Identities=10% Similarity=0.138 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048807 670 VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTE 732 (757)
Q Consensus 670 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 732 (757)
.=++.+-++.+....+.|++....+.+.+|.+-+++.-|+++++-...+ ...+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 3355566666666777888888888888888888888888888877654 3334456666653
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.19 E-value=25 Score=31.55 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=25.0
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 595 KSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
..|.+++.....+.+...+-+.....-.+|.-+-.+.|++.+|.+.|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4455555554444444333222333344444444555555555555555554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.04 E-value=1.8 Score=26.73 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKF 288 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 288 (757)
+|..+..+|...|++++|+..|+++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4455555555556666666555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.65 E-value=2.5 Score=41.66 Aligned_cols=54 Identities=13% Similarity=0.019 Sum_probs=29.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048807 590 ISFLSKSGNFSAARRVLKKMVKEGLVP-TVVTYGALIHAFCVNGHVDEAMKIFKELS 645 (757)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 645 (757)
..-|.+.|.+++|+..|...+.. .| +.+++..-..+|.+..++..|..-.....
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 34455566666666666555543 23 55555555556666655555554444433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.43 E-value=9.2 Score=34.97 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=37.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHh
Q 048807 593 LSKSGNFSAARRVLKKMVKEGLVPT-----VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN-TVIYNILIDSLCK 666 (757)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 666 (757)
+.+.|++++|..-|..++..- ++. ...|..-..++.+.+.++.|+.-..+.++ +.|. .....--..+|.+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHHHh
Confidence 445555555555555555531 111 12233333344455555555554444444 1121 1112222334444
Q ss_pred cCCHHHHHHHHHHHHh
Q 048807 667 NNQVELALSLMEEMKV 682 (757)
Q Consensus 667 ~g~~~~A~~~~~~m~~ 682 (757)
...+++|++-|+++.+
T Consensus 181 ~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILE 196 (271)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5555555555555544
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.41 E-value=0.021 Score=50.59 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=20.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 592 FLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIF 641 (757)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 641 (757)
.+.+.+.++....+++.+...+...+....+.++..|++.++.++..+++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 33334444444444444443332333444444444444444444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.37 E-value=55 Score=34.77 Aligned_cols=90 Identities=4% Similarity=0.003 Sum_probs=61.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 048807 280 DVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLY-RADEALEVFEKMIAG 358 (757)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~ 358 (757)
.+|+.+..+ +.-|+..|...+..+.+.+.+.+..++|.+|.... +.++..|-.-.......+ .++.|..+|.+.+..
T Consensus 92 ~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 92 FLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 344444443 23389999999999988888999999999999863 334455544444444444 499999999999886
Q ss_pred CCCCcccccCCHhHHHHHHH
Q 048807 359 KETAEISVEPDVIIFNTLID 378 (757)
Q Consensus 359 ~~~~~~~~~~~~~~~~~li~ 378 (757)
+ +.....|....+
T Consensus 170 n-------pdsp~Lw~eyfr 182 (568)
T KOG2396|consen 170 N-------PDSPKLWKEYFR 182 (568)
T ss_pred C-------CCChHHHHHHHH
Confidence 4 444555554443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.13 E-value=12 Score=33.77 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 670 VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 670 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
+++|.+.|++..+ ..|+...|+.-+... ++|-++..++.++
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 4455555555555 356666666555443 2344444444443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=84.83 E-value=35 Score=38.21 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVL 285 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 285 (757)
++.-|+ .+..+.-.|.++.|.+++...
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 467777 677788899999999988543
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.61 E-value=12 Score=36.90 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048807 548 IVCYNHLISGFCKKKMLDKAYEVLQEMEDIG---MTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGAL 624 (757)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 624 (757)
..+...++..-....+++.+...+-++...- ..++... .+.+.. +-.-++++++.++..=+..|+-||-.+++.+
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHH-HHccChHHHHHHHhCcchhccccchhhHHHH
Confidence 3344444444444556666666655554321 0111111 111222 2223455666666666666666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh
Q 048807 625 IHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 625 i~~~~~~g~~~~A~~~~~~~~~ 646 (757)
++.+.+.+++.+|.++.-.|..
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666655555444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.12 E-value=12 Score=40.28 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=53.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHH
Q 048807 454 CRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDAS 533 (757)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 533 (757)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 35566666666544432 455666666666666666666666665432 334555555555555444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 534 LVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQE 573 (757)
Q Consensus 534 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (757)
.+-....+.|.. |...-+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 444444444321 2223344555666666665543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.08 E-value=6.9 Score=31.40 Aligned_cols=59 Identities=10% Similarity=0.166 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048807 672 LALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILT 731 (757)
Q Consensus 672 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 731 (757)
+..+-++.+....+.|++....+.+.+|.+.+++..|+++++-...+ ..+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 45555666666677788888888888888888888888888877664 333333666665
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.77 E-value=33 Score=30.91 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 048807 429 ELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINS 461 (757)
Q Consensus 429 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 461 (757)
+.++.+.+.+++|+...+..+++.+.+.|++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344444455555666666666666666665443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=83.59 E-value=89 Score=35.81 Aligned_cols=227 Identities=11% Similarity=0.027 Sum_probs=114.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHHc----CCCCCHhhHHHHH
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCANA-------VTYTILIT-AFCNVNNFQEAIKWFDDMSRA----GCSADSVVYFTLI 520 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li 520 (757)
.....++.+|..++.++...-..|+. ..++.|-. .....|++++|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888877654222221 13343322 234567888888887766553 2234556667777
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH---HH--HHHHHhcCC--HHHHHHHHHHHHhCC---CCC---CHHHHH
Q 048807 521 SGLCQAGRMNDASLVVSKLKEAGFRPDIVCYN---HL--ISGFCKKKM--LDKAYEVLQEMEDIG---MTP---NSVTYN 587 (757)
Q Consensus 521 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~---~l--i~~~~~~g~--~~~A~~~~~~~~~~~---~~~---~~~~~~ 587 (757)
.+..-.|++++|..+..+..+.--.-+...+. .+ ...+...|+ ..+....|....... .+. -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 77788888888888776655432222333222 22 223445663 233333333332221 011 122334
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHhhhcC---CCCCCHHHHHHHH
Q 048807 588 TLISFLSK-SGNFSAARRVLKKMVKEGLVPTVVT--YGALIHAFCVNGHVDEAMKIFKELSSSS---NVSPNTVIYNILI 661 (757)
Q Consensus 588 ~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p~~~~~~~li 661 (757)
.+..++.+ .+...+|..-+.--......|-... +..|+..+...|++++|...+.++.... +..++...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 44444443 1222233333332222222222222 2256677778899999988888876521 1112222222222
Q ss_pred HH--HHhcCCHHHHHHHHHH
Q 048807 662 DS--LCKNNQVELALSLMEE 679 (757)
Q Consensus 662 ~~--~~~~g~~~~A~~~~~~ 679 (757)
.. ....|+..+|.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 2346777777666655
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.06 E-value=23 Score=32.55 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=70.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 266 ITRFCRKGKTDEAWDVLHVLMKFDAPLE----AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
.+-+.+.|++++|..-|..++..-+... .+.|..-..++.+.+.++.|+.-....++.+ +-.......-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 3457789999999999999988744322 3456666778889999999999999988875 2233334444567888
Q ss_pred cCChhHHHHHHHHHHhCC
Q 048807 342 LYRADEALEVFEKMIAGK 359 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~ 359 (757)
...+++|++-|.++++.+
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 899999999999998864
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.44 E-value=3.1 Score=25.47 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhC
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKF 288 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 288 (757)
+..+...|.+.|++++|++.|++..+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344555555555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.38 E-value=3.4 Score=26.76 Aligned_cols=28 Identities=18% Similarity=0.437 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 690 NTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 690 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
.+++.+...|...|++++|..++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777778888888888888777754
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.12 E-value=14 Score=34.20 Aligned_cols=79 Identities=13% Similarity=0.030 Sum_probs=53.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHH
Q 048807 665 CKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH---ACHPDYISMEILTEWLSEAGQTE 741 (757)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~ 741 (757)
.+.|+ ++|.+.|-++...+.--++.....|+..| -..+.++|+.++.+.++. +-.+|+..+.+|++.+.+.|+.+
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 67777777777665555555555555444 456778888888887763 22566778888888888888888
Q ss_pred HHHH
Q 048807 742 KLKK 745 (757)
Q Consensus 742 ~A~~ 745 (757)
+|.=
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 7753
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.92 E-value=13 Score=33.59 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048807 670 VELALSLMEEMKVKEVRPNT-NTYNAMFKGLRQKN-----------MLDKAFKLMDRMIEHACHPDYISMEILTEWLSE 736 (757)
Q Consensus 670 ~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 736 (757)
+++|+.-|++.+. +.|+. .++.+++.+|...+ .+++|.+.|+++.+ .+|+...|..-+....+
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh
Confidence 3444555555554 34543 56666777665443 25666777777775 58999999877776654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.64 E-value=2.8 Score=25.77 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 691 TYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 691 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
+|..+...+...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555556666666666666666554
|
... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.52 E-value=3.5 Score=26.70 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 048807 296 SCNALLNALGREGDFKRMNQLFTEMK 321 (757)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~m~ 321 (757)
+++.|...|...|++++|.+++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.18 E-value=13 Score=36.64 Aligned_cols=101 Identities=17% Similarity=0.232 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHH
Q 048807 580 TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEG---LVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVI 656 (757)
Q Consensus 580 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 656 (757)
+....+...++..-....+++.+...+-++.... ..|+... .+++..+ -.-+.++++.++..=.. +|+-||.++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIq-YGiF~dqf~ 137 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQ-YGIFPDQFT 137 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcch-hccccchhh
Confidence 3344445555555555667777777777776531 1122111 1222222 22356677777776666 788888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 657 YNILIDSLCKNNQVELALSLMEEMKVK 683 (757)
Q Consensus 657 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 683 (757)
++.+++.+.+.+++.+|..+...|+..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888877777653
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.12 E-value=15 Score=33.95 Aligned_cols=72 Identities=18% Similarity=0.084 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHH
Q 048807 387 EEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE---GVTPNVVTLNTLVDGMCRHGRINSA 462 (757)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A 462 (757)
++|++.|-.+. ..+...++.....|...|. ..+.+++++++....+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E---~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLE---GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHc---CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 33444444443 3333333444444443333 34455555555544432 2234455555555555555555554
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.86 E-value=10 Score=35.28 Aligned_cols=79 Identities=22% Similarity=0.184 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHH
Q 048807 331 TFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVT 410 (757)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 410 (757)
|.+..+..+.+.+++.+|+...+.-++.. +.|...-..++..||-.|++++|..-++-.... .....+....
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l-~p~~t~~a~l 74 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL-SPQDTVGASL 74 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-------CccccchhHHHHHHhhcchHHHHHHHHHHHhhc-CcccchHHHH
Confidence 34555667777888888888887777764 556667777888888888888888777655321 3333444566
Q ss_pred HHHHHHH
Q 048807 411 YNCLING 417 (757)
Q Consensus 411 ~~~li~~ 417 (757)
|..+|.+
T Consensus 75 yr~lir~ 81 (273)
T COG4455 75 YRHLIRC 81 (273)
T ss_pred HHHHHHH
Confidence 6666654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 97.2 bits (240), Expect = 7e-21
Identities = 23/170 (13%), Positives = 60/170 (35%), Gaps = 1/170 (0%)
Query: 363 EISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSG 422
+ + + A L+ + QK + YN ++ G+ + G
Sbjct: 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG 179
Query: 423 NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVE-FFQEVTRKGLCANAVTY 481
++ + + ++K G+TP++++ + M R + +E ++++++GL A+
Sbjct: 180 AFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT 239
Query: 482 TILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMND 531
+L++ + K S V L+ +
Sbjct: 240 AVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 91.0 bits (224), Expect = 6e-19
Identities = 30/190 (15%), Positives = 65/190 (34%), Gaps = 5/190 (2%)
Query: 504 MSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKE---AGFRPDIVCYNHLISGFCK 560
S+A S ++ A ++ + YN ++ G+ +
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 561 KKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFS-AARRVLKKMVKEGLVPTVV 619
+ + VL ++D G+TP+ ++Y + + + + R L++M +EGL +
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 620 TYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEE 679
L+ V +A+ K S P V + L+ + + L
Sbjct: 238 FTAVLLSEEDRAT-VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLP 296
Query: 680 MKVKEVRPNT 689
+K +
Sbjct: 297 LKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 85.6 bits (210), Expect = 3e-17
Identities = 23/200 (11%), Positives = 56/200 (28%), Gaps = 3/200 (1%)
Query: 528 RMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDI---GMTPNSV 584
++ + +A L A+ +L
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 585 TYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKEL 644
YN ++ ++ G F VL + GL P +++Y A + ++ E
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 645 SSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNM 704
S + + +L+ + ++ + + P + + + + K+
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
Query: 705 LDKAFKLMDRMIEHACHPDY 724
KL + C +
Sbjct: 287 RVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 84.5 bits (207), Expect = 6e-17
Identities = 15/165 (9%), Positives = 45/165 (27%), Gaps = 3/165 (1%)
Query: 567 AYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIH 626
A + +P L+ + + + + L A
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 627 AFCVNGHVDEAMKIFKELSS--SSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKE 684
+ + A + +YN ++ + + + ++ +K
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 685 VRPNTNTYNAMFKGL-RQKNMLDKAFKLMDRMIEHACHPDYISME 728
+ P+ +Y A + + RQ + +++M + +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 79.5 bits (194), Expect = 2e-15
Identities = 28/212 (13%), Positives = 64/212 (30%), Gaps = 4/212 (1%)
Query: 434 MKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNN 493
+Q +P L L+ ++ + ++ L +
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 494 FQEA---IKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVC 550
A + + +Y ++ G + G + V+ +K+AG PD++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 551 YNHLISGFCKKKMLDKAYE-VLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKM 609
Y + ++ E L++M G+ ++ L+S ++ A +V
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
Query: 610 VKEGLVPTVVTYGALIHAFCVNGHVDEAMKIF 641
+P V L+ K+
Sbjct: 263 SLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.4 bits (142), Expect = 3e-09
Identities = 23/179 (12%), Positives = 54/179 (30%), Gaps = 13/179 (7%)
Query: 262 LTQLITRFCRKGKTDEAWDVLHVL---MKFDAPLEAASCNALLNALGREGDFKRMNQLFT 318
L + A +L V + L NA++ R+G FK + +
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189
Query: 319 EMKENDIEPSVVTFGTIINRLCKLYRADEALE-VFEKMIAGKETAEISVEPDVIIFNTLI 377
+K+ + P ++++ + + + + +E E+M + L+
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLK------LQALFTAVLL 243
Query: 378 DGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQ 436
+ + + L +P V + L+ +L +K
Sbjct: 244 SEEDRATVLKAVHKVKPTFSLP---PQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.3 bits (126), Expect = 3e-07
Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 3/105 (2%)
Query: 641 FKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSL---MEEMKVKEVRPNTNTYNAMFK 697
S + +S +Q+ LA L + K + YNA+
Sbjct: 114 PSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML 173
Query: 698 GLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEK 742
G ++ + ++ + + PD +S + + Q
Sbjct: 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG 218
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.1 bits (199), Expect = 7e-16
Identities = 94/565 (16%), Positives = 186/565 (32%), Gaps = 163/565 (28%)
Query: 41 IITQALDVLLQTPDNEW--------TSSPQIKNLLFSST--SL--SPQLF--FQITRRFP 86
++ + ++ +L+ + ++ P + ++ L Q+F + ++R P
Sbjct: 78 MVQKFVEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 87 SSSRALSFFNFLQSNL----PTE---------------ANTSSLSYAYQAVFE-----LA 122
+ L+ L P + A LSY Q + L
Sbjct: 137 --------YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 123 IRERMSPESLFD-----LYKACKD--------QNIPLSINSATLLIRFFGKVSMYDYSLL 169
++ SPE++ + LY+ + NI L I+S +R K Y+ LL
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 170 VYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFN----VLDEMLDRESQFPVNELTGDIVF 225
V L N V+N +AFN +L + R Q + L+
Sbjct: 249 V---LLN------VQNA--KAW-------NAFNLSCKIL--LTTRFKQV-TDFLSAATTT 287
Query: 226 YALMRREHVKNSVTDEELVGLVSKFAE----------HGVFPNAVWLTQLITRFCRKGKT 275
+ + +H ++T +E+ L+ K+ + P + +I R G
Sbjct: 288 HISL--DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL---SIIAESIRDGL- 341
Query: 276 DEAWD-VLHV-LMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN-DIEPSVVTF 332
WD HV K +E++ LN L ++++M + + I +
Sbjct: 342 -ATWDNWKHVNCDKLTTIIESS-----LNVL-EPAEYRKMFDRLSVFPPSAHIPTIL--- 391
Query: 333 GTIINRLCKLYRADEALEVFEKM--IAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEAL 390
L ++ +V + + E + I ++ L + E AL
Sbjct: 392 ------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 391 --GLIEQMRLRLQKGCMPNAVTYNCLINGFC--------KSGNIEKGLEL------FHLM 434
+++ + K + + L F + E+ F +
Sbjct: 446 HRSIVDH--YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 435 KQ----EGVTPNVVT--LNTLVD------GMCRH-----GRINSAVEFFQEVTRKGLCAN 477
+Q + N LNTL +C + +N+ ++F ++ +C+
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 478 AVTYT-ILITAFCNVNN--FQEAIK 499
YT +L A + F+EA K
Sbjct: 564 ---YTDLLRIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 3e-05
Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 45/161 (27%)
Query: 547 DIVCYNHLISGFCK----KKMLDKAYEVL--QEMEDIGMTPNSV--TYNTLISFLSKSGN 598
DI+ + F K + D +L +E++ I M+ ++V T + LSK
Sbjct: 20 DIL--SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 599 FSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYN 658
+++K V+E L Y L I E S T +Y
Sbjct: 78 ------MVQKFVEEVLRIN---YKFL------------MSPIKTEQRQPS---MMTRMYI 113
Query: 659 ILIDSLCKNNQV---------ELALSLMEEMKVKEVRPNTN 690
D L +NQV + L L + + E+RP N
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQ--ALLELRPAKN 152
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 51/434 (11%), Positives = 120/434 (27%), Gaps = 69/434 (15%)
Query: 300 LLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGK 359
L GD+ R L T+ S L KLY AL + + +
Sbjct: 123 LAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR 180
Query: 360 ETAE---------ISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVT 410
+ + ++ + + + + A ++ L + C
Sbjct: 181 KDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA-LMVDAKC---YEA 236
Query: 411 YNCLINGFCKSGNIEKGLEL---FHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQ 467
++ L++ + + E L L + +E ++ + A ++
Sbjct: 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296
Query: 468 EVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAG 527
+ ++ + F + + +
Sbjct: 297 SINGLE--KSSDLLLCKADTLFVRSRFIDVLAITTKI----------------------- 331
Query: 528 RMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNS-VTY 586
L+ + D Y ++ + +K Y + ++ D P VT+
Sbjct: 332 -----------LEIDPYNLD--VYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTW 376
Query: 587 NTLISFLSKSGNFSAARRVLKKMVKEGLVPT-VVTYGALIHAFCVNGHVDEAMKIFKELS 645
+ + S ARR K + P + H+F + G D+A+ +
Sbjct: 377 LAVGIYYLCVNKISEARRYFSKSST--MDPQFGPAWIGFAHSFAIEGEHDQAISAYTT-- 432
Query: 646 SSSNVSPNTVI-YNILIDSLCKNNQVELALSLMEEMKVKEVRP-NTNTYNAMFKGLRQKN 703
++ + T + Y L + + LA ++ + + N + K+
Sbjct: 433 -AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ--SSYALFQYDPLLLNELGVVAFNKS 489
Query: 704 MLDKAFKLMDRMIE 717
+ A +
Sbjct: 490 DMQTAINHFQNALL 503
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 24/175 (13%), Positives = 55/175 (31%), Gaps = 2/175 (1%)
Query: 560 KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVV 619
K D+A + + + N + Y + + + +++ + +
Sbjct: 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL 135
Query: 620 TYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEE 679
Y + + IFK+ + + + L++ C + +A + E
Sbjct: 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD-KSVAFKIFEL 194
Query: 680 MKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWL 734
+K+ A L N + L +R++ P S EI +L
Sbjct: 195 G-LKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 248
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 757 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.51 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.41 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.29 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.23 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.21 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.11 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.08 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.04 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.04 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.04 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.03 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.02 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.01 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.0 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.99 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.98 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.97 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.96 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.96 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.93 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.93 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.91 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.9 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.88 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.86 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.85 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.84 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.84 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.82 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.74 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.73 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.69 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.67 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.66 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.66 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.65 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.65 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.64 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.64 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.63 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.63 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.62 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.62 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.57 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.57 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.56 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.55 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.51 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.5 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.5 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.49 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.47 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.46 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.44 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.44 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.44 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.43 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.43 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.43 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.42 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.41 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.4 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.37 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.34 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.33 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.32 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.32 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.3 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.29 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.27 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.26 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.24 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.23 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.21 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.18 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.18 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.18 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.17 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.11 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.11 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.1 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.08 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.05 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.05 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.04 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.04 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.03 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.96 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.96 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.95 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.94 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.94 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.94 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.91 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.91 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.89 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.88 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.85 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.83 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.78 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.72 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.69 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.67 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.65 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.64 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.63 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.63 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.57 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.53 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.52 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.49 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.43 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.29 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.29 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.04 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.77 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.76 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.63 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.6 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.54 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.5 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.45 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.24 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.2 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.97 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.83 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.76 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.68 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.57 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.47 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.47 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.39 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.37 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.35 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.29 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.25 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.19 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.12 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.34 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.01 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.77 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.77 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.98 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.43 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.2 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.13 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.1 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.66 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.05 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.89 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.76 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.52 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.83 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.6 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.09 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.56 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.0 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.54 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.44 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 84.26 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.24 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=380.85 Aligned_cols=504 Identities=11% Similarity=0.020 Sum_probs=291.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHH
Q 048807 146 LSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVF 225 (757)
Q Consensus 146 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~ 225 (757)
++...++.+++.|.+.|++++|+.+|+++....|+..+++.++.+|.+.|++++|+.+|+++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------- 145 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---------------- 145 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG----------------
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc----------------
Confidence 3455566666666666666666666666554444555566666666666666666666655421
Q ss_pred HHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048807 226 YALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALG 305 (757)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 305 (757)
.+++..+++.++.+|.++|++++|+++|+++... +.. ..++.
T Consensus 146 -----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-----~~~~~ 187 (597)
T 2xpi_A 146 -----------------------------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPF----RKD-----EKNAN 187 (597)
T ss_dssp -----------------------------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT----C------------
T ss_pred -----------------------------cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc----ccc-----ccccc
Confidence 1234556666666666666666666666642211 100 00000
Q ss_pred HcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCC
Q 048807 306 REGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK 385 (757)
Q Consensus 306 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 385 (757)
+.++ ...+.+++..+|+.++.+|.+.|++++|++.|+++++.+ +.+...+..++..+...+.
T Consensus 188 ~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~ 249 (597)
T 2xpi_A 188 KLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-------AKCYEAFDQLVSNHLLTAD 249 (597)
T ss_dssp ---C-----------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHTTCSCHH
T ss_pred cccc-----------cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------chhhHHHHHHHHhhcccch
Confidence 0000 001222344555555555555555555555555555432 2233444444433332222
Q ss_pred HHHHHH--H-HHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 048807 386 QEEALG--L-IEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSA 462 (757)
Q Consensus 386 ~~~A~~--~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 462 (757)
.+.+.. + +..+. ..+......+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|
T Consensus 250 ~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 324 (597)
T 2xpi_A 250 EEWDLVLKLNYSTYS---KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDV 324 (597)
T ss_dssp HHHHHHHHSCTHHHH---GGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHhcCCcccc---cchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHH
Confidence 111111 0 22221 1222223344455555555556666666666555543 34555666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 048807 463 VEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEA 542 (757)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 542 (757)
.++|+++.+.+.. +..+++.++.+|.+.|++++|..+++++.+.. +.+..+|+.++..|.+.|++++|..+|+++.+.
T Consensus 325 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 402 (597)
T 2xpi_A 325 LAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402 (597)
T ss_dssp HHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666554332 44555666666666666666666666665432 445556666666666666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048807 543 GFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYG 622 (757)
Q Consensus 543 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 622 (757)
. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+
T Consensus 403 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 479 (597)
T 2xpi_A 403 D-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLN 479 (597)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 2 2245666777777777777777777777766654 4466677777777777777777777777777643 33567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhc---CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 623 ALIHAFCVNGHVDEAMKIFKELSSS---SNVSPN--TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFK 697 (757)
Q Consensus 623 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 697 (757)
.++..|.+.|++++|.++|+++.+. .+..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..++.
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~ 558 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 7777777777777777777777652 144566 6678888888888888888888888877653 346778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 048807 698 GLRQKNMLDKAFKLMDRMIEHACHPD-YISMEILTEWL 734 (757)
Q Consensus 698 ~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 734 (757)
+|.+.|++++|.++++++++. .|+ ...+..+...|
T Consensus 559 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 559 VYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 888888888888888888764 453 45555555443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=376.21 Aligned_cols=501 Identities=12% Similarity=0.043 Sum_probs=374.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHH
Q 048807 113 YAYQAVFELAIRERMSPESLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLL 192 (757)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 192 (757)
..+..++..+ ...+.+++|+.+|+.+... .|+..++..++.+|.+.|++++|+.+|+++....+++.+++.++.+|.
T Consensus 85 ~~~~~~~~~~-~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 85 DYLRLWRHDA-LMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 4455555544 4478899999999999853 457789999999999999999999999998766678899999999999
Q ss_pred hcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048807 193 RCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRK 272 (757)
Q Consensus 193 ~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 272 (757)
++|++++|+++|+++.. +.. .+ ..+.+.
T Consensus 162 ~~g~~~~A~~~~~~~~~-------~~~----------------------~~-----------------------~~~~~~ 189 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNP-------FRK----------------------DE-----------------------KNANKL 189 (597)
T ss_dssp HTTCHHHHHHHHCSSCT-------TC------------------------------------------------------
T ss_pred HHhhHHHHHHHHhccCC-------ccc----------------------cc-----------------------cccccc
Confidence 99999999999985321 110 00 000011
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHH--H
Q 048807 273 GKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEAL--E 350 (757)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~--~ 350 (757)
++ ...+.+.++.+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+..+...+...+..+.+. .
T Consensus 190 ~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (597)
T 2xpi_A 190 LM-----------QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLK 257 (597)
T ss_dssp -C-----------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred cc-----------cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHh
Confidence 11 112233456667777777777777777777777776653 223333444433332222211111 1
Q ss_pred H-HHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 048807 351 V-FEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLE 429 (757)
Q Consensus 351 ~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (757)
+ +..+...+ ......+|+.++..|.+.|++++|.++|+++. .. +++..+|+.++.+|.+.|++++|++
T Consensus 258 l~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 326 (597)
T 2xpi_A 258 LNYSTYSKED------AAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN---GL--EKSSDLLLCKADTLFVRSRFIDVLA 326 (597)
T ss_dssp SCTHHHHGGG------HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTST---TG--GGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCcccccch------HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhh---cC--CchHHHHHHHHHHHHHhcCHHHHHH
Confidence 1 33343333 34455667777888888888888888888874 11 5788888888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 048807 430 LFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGC 509 (757)
Q Consensus 430 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 509 (757)
+|+++.+.+.. +..++..++.++.+.|++++|.++++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus 327 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 403 (597)
T 2xpi_A 327 ITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD- 403 (597)
T ss_dssp HHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 88888876533 67788888888888888888888888888654 3377888888888888888888888888888754
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048807 510 SADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTL 589 (757)
Q Consensus 510 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 589 (757)
+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.+
T Consensus 404 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 481 (597)
T 2xpi_A 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNEL 481 (597)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 4567788888889999999999999998888764 3477888899999999999999999999998775 5678889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 048807 590 ISFLSKSGNFSAARRVLKKMVKE----GLVPT--VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDS 663 (757)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~ 663 (757)
+..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+. + +.+..+|..++.+
T Consensus 482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-S-TNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-SCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-CCChHHHHHHHHH
Confidence 99999999999999999998875 55677 788999999999999999999999998872 2 4578889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 664 LCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGL 699 (757)
Q Consensus 664 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 699 (757)
|.+.|++++|.+.|+++.+.. +.+...+..+..+|
T Consensus 560 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 999999999999999998852 33556666666554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-28 Score=255.57 Aligned_cols=383 Identities=13% Similarity=0.066 Sum_probs=317.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 335 IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 335 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
+...+.+.|++++|++.++++.+.. |.+...+..+...+.+.|++++|...++... ...+.+..+|..+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~----~~~p~~~~~~~~l 73 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI----KQNPLLAEAYSNL 73 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCCchHHHHHH
Confidence 3456778889999999998888764 5567778888888888999999999888874 3346678889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 415 INGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNF 494 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 494 (757)
+..|.+.|++++|++.|+++.+.. +.+..+|..++.++.+.|++++|.+.|+++.+..+. +...+..+...+...|++
T Consensus 74 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 151 (388)
T 1w3b_A 74 GNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRL 151 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCH
Confidence 999999999999999999988763 225667888999999999999999999998887543 556777888888889999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEM 574 (757)
Q Consensus 495 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (757)
++|.+.|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.+. .+...+..+...+...|++++|...|++.
T Consensus 152 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 229 (388)
T 1w3b_A 152 EEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRA 229 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999988764 55678888999999999999999999999888743 35778888999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 048807 575 EDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654 (757)
Q Consensus 575 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 654 (757)
.+.. +.+..++..++..|.+.|++++|...|+++++.. +.+..++..++.++.+.|++++|...++++.+. .+.+.
T Consensus 230 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 305 (388)
T 1w3b_A 230 LSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHA 305 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCH
T ss_pred HhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccH
Confidence 8875 5567888999999999999999999999999864 235778889999999999999999999999882 45677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 048807 655 VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPD-YISMEILTEW 733 (757)
Q Consensus 655 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 733 (757)
.++..++..+.+.|++++|...++++.+.. +.+..++..++.++.+.|++++|.+.++++++ +.|+ ...|..+...
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 306 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT 382 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHH
Confidence 889999999999999999999999998752 44677899999999999999999999999986 4564 4777788777
Q ss_pred HHhcCC
Q 048807 734 LSEAGQ 739 (757)
Q Consensus 734 ~~~~g~ 739 (757)
+...|+
T Consensus 383 ~~~~~~ 388 (388)
T 1w3b_A 383 LKEMQD 388 (388)
T ss_dssp HHHTCC
T ss_pred HHHccC
Confidence 766653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-28 Score=256.96 Aligned_cols=381 Identities=14% Similarity=0.105 Sum_probs=214.2
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChh
Q 048807 267 TRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRAD 346 (757)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 346 (757)
..+.+.|++++|++.+..+.+..+. +...+..+...+.+.|++++|...++..++.. +.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 3444555555555555555554332 44444555555555555555555555554432 334444555555555555555
Q ss_pred HHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHH
Q 048807 347 EALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEK 426 (757)
Q Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 426 (757)
+|++.|+++++.. +.+..+|..++..+.+.|++++|.+.|+++
T Consensus 85 ~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------------------ 127 (388)
T 1w3b_A 85 EAIEHYRHALRLK-------PDFIDGYINLAAALVAAGDMEGAVQAYVSA------------------------------ 127 (388)
T ss_dssp HHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHcC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------------------
Confidence 5555555554432 233344555555555555555555555544
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048807 427 GLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSR 506 (757)
Q Consensus 427 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (757)
.+... .+...+..+...+...|++++|.+.|+++.+..+. +..+|..+...|.+.|++++|...|+++.+
T Consensus 128 --------l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 128 --------LQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp --------HHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred --------HHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 43321 12333444444444445555555555554443221 344555555555555555555555555555
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048807 507 AGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTY 586 (757)
Q Consensus 507 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 586 (757)
.+ +.+...+..+...+...|++++|...+++..+.. +.+..++..++..|.+.|++++|.+.|+++.+.+ +.+..+|
T Consensus 198 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 274 (388)
T 1w3b_A 198 LD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAY 274 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH
Confidence 43 3344555556666666666666666666655542 1245566666666666777777777776666654 4455666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHh
Q 048807 587 NTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCK 666 (757)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 666 (757)
..++..+.+.|++++|...|+++++.. +.+..++..+...+...|++++|...++++.+ ..+.+..++..++..|.+
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQ 351 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHH
Confidence 667777777777777777777776642 34566677777777777777777777777665 223345667777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 667 NNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN 703 (757)
Q Consensus 667 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 703 (757)
.|++++|...|+++.+.. +.+...|..+...+...|
T Consensus 352 ~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 352 QGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 777777777777776631 224556666666666554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=264.16 Aligned_cols=185 Identities=18% Similarity=0.294 Sum_probs=108.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHhCCCCCCHHHH
Q 048807 551 YNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGN---------FSAARRVLKKMVKEGLVPTVVTY 621 (757)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~~~~p~~~~~ 621 (757)
++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. +++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444555555555555555555555555555555555555555544332 45556666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 622 GALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQ 701 (757)
Q Consensus 622 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 701 (757)
++||.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++|+.+|++
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 6666666666666666666666655 556666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048807 702 KNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSE 736 (757)
Q Consensus 702 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 736 (757)
.|++++|.+++++|.+.|..|+..||..++..++.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666655666666666665555543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=262.09 Aligned_cols=185 Identities=15% Similarity=0.259 Sum_probs=112.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHhCCCCCCHHHH
Q 048807 516 YFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKK---------MLDKAYEVLQEMEDIGMTPNSVTY 586 (757)
Q Consensus 516 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~~~~~~~~~~~~~~ 586 (757)
++.+|++|++.|++++|.++|++|.+.|+.||..+||.+|.+|++.+ .+++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34444444444444444444444444444444444444444444332 245666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHh
Q 048807 587 NTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCK 666 (757)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 666 (757)
++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE-SEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhh
Confidence 666666666666666666666666666666666666666666666666666666666666 5666666666666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 667 NNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQ 701 (757)
Q Consensus 667 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 701 (757)
.|++++|.++|++|.+.|..|+..||+.++..++.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-24 Score=239.45 Aligned_cols=445 Identities=11% Similarity=0.001 Sum_probs=327.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..+...|.+.|++++|+..|+++.+.+ |+..+|..++.+|.+.|++++|.+.|+++++.+ +.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456778889999999999999999999876 589999999999999999999999999999875 4456788999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGF 418 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (757)
+.+.|++++|+..|+++.+.+ +++......++..+.+......+.+.+..+. ..+..|+...+.......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~ 152 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-------DFNDASIEPMLERNLNKQAMSKLKEKFGDID---TATATPTELSTQPAKERK 152 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-------SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcC-------CCccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhccCChhhHHH
Confidence 999999999999999999875 4455555555555555444444444443321 111111111111111101
Q ss_pred HHcCCHHHHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHH-----CC--C-----
Q 048807 419 CKSGNIEKGLELFHLMKQEGV---------TPNVVTLNTLVDGMCR---HGRINSAVEFFQEVTR-----KG--L----- 474 (757)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~--~----- 474 (757)
...........+...+..... +.+...+......+.. .|++++|...++++.+ .. .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 232 (514)
T 2gw1_A 153 DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232 (514)
T ss_dssp ----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred hhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc
Confidence 111111111111111111111 1124445555555554 7899999999999887 31 1
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 048807 475 -CANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNH 553 (757)
Q Consensus 475 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 553 (757)
+.+..++..+...+...|++++|...|+++.+.. |+...+..+...+...|++++|...++++.+... .+...+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 309 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHH
Confidence 1235677888899999999999999999998875 3388888999999999999999999999988743 36778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 048807 554 LISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGH 633 (757)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 633 (757)
+...|...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...|...|+
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999875 5567888899999999999999999999998753 3356788889999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048807 634 VDEAMKIFKELSSSSNVSPN----TVIYNILIDSLCK---NNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLD 706 (757)
Q Consensus 634 ~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 706 (757)
+++|...++++.+.....++ ...+..++..+.+ .|++++|...|+++.+.. +.+..++..++.++.+.|+++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHH
Confidence 99999999988763222222 3478899999999 999999999999998753 446778899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCH
Q 048807 707 KAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 707 ~A~~~~~~~~~~g~~p~~ 724 (757)
+|.+.++++++. .|+.
T Consensus 467 ~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 467 EAITLFEESADL--ARTM 482 (514)
T ss_dssp HHHHHHHHHHHH--CSSH
T ss_pred HHHHHHHHHHHh--cccc
Confidence 999999999974 5665
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-24 Score=237.44 Aligned_cols=438 Identities=11% Similarity=0.008 Sum_probs=330.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVII 372 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
....|......+.+.|++++|.+.|+++++.+ |+..+|..+..++.+.|++++|++.++++++.+ +.+..+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 75 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-------PDYSKV 75 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------SCCHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-------hHHHHH
Confidence 35677888899999999999999999999975 688899999999999999999999999999875 667889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDG 452 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (757)
|..++.+|.+.|++++|...|+++. . ..+++......++..+........+.+.+..+...+..|+..........
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 151 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLS---L-NGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---H-SSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH---h-cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH
Confidence 9999999999999999999999985 2 23455555666666665555555555555444333222222211111111
Q ss_pred HHHcCChHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cC-C-----
Q 048807 453 MCRHGRINSAVEFFQEVTRKGL---------CANAVTYTILITAFCN---VNNFQEAIKWFDDMSR-----AG-C----- 509 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~-~----- 509 (757)
............+...+..... +.+...+..+...+.. .|++++|...|+++.+ .. .
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 231 (514)
T 2gw1_A 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK 231 (514)
T ss_dssp -----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH
T ss_pred HhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccc
Confidence 1111111111111111111111 1225555555555554 8999999999999987 31 1
Q ss_pred --CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048807 510 --SADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYN 587 (757)
Q Consensus 510 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 587 (757)
+.+..++..+...+...|++++|...++++.+... +...+..++..|...|++++|...++++.+.. +.+...+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 308 (514)
T 2gw1_A 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYY 308 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHH
T ss_pred cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHH
Confidence 22456788899999999999999999999998753 38889999999999999999999999999875 55778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhc
Q 048807 588 TLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKN 667 (757)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 667 (757)
.+...|...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+. .+.+...+..++..|.+.
T Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~ 385 (514)
T 2gw1_A 309 HRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDK 385 (514)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHC
Confidence 99999999999999999999999864 336778889999999999999999999999873 234567899999999999
Q ss_pred CCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048807 668 NQVELALSLMEEMKVKEV-RPN----TNTYNAMFKGLRQ---KNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQ 739 (757)
Q Consensus 668 g~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 739 (757)
|++++|...++++.+... .++ ...|..++.++.. .|++++|.+.++++++. .+.+..++..++..+...|+
T Consensus 386 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-DPRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcC
Confidence 999999999999986321 111 3488999999999 99999999999999975 23356888999999999999
Q ss_pred HHHHHHHHhhc
Q 048807 740 TEKLKKFVQGY 750 (757)
Q Consensus 740 ~~~A~~~~~~~ 750 (757)
.++|.+.+++.
T Consensus 465 ~~~A~~~~~~a 475 (514)
T 2gw1_A 465 IDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-23 Score=221.53 Aligned_cols=373 Identities=13% Similarity=0.110 Sum_probs=294.3
Q ss_pred HHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 348 ALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKG 427 (757)
Q Consensus 348 A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 427 (757)
+...+..++..+ +.+...+..++..|.+.|++++|..+|+++.. ..+.+..+|..++.+|...|++++|
T Consensus 11 ~~~~~~~~~~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~l~~~~~~~g~~~~A 79 (450)
T 2y4t_A 11 VDLGTENLYFQS-------MADVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDNYIAYYRRATVFLAMGKSKAA 79 (450)
T ss_dssp -------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccccccccccc-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHCCCHHHH
Confidence 344455555443 66788999999999999999999999999852 2466899999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHhcC
Q 048807 428 LELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANA---VTYTIL------------ITAFCNVN 492 (757)
Q Consensus 428 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g 492 (757)
++.|+++.+.+. .+..++..++..|.+.|++++|.+.|+++.+.... +. ..+..+ ...+.+.|
T Consensus 80 ~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 80 LPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999998753 36889999999999999999999999999987432 33 555555 44588999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048807 493 NFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQ 572 (757)
Q Consensus 493 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 572 (757)
++++|+..|+++.+.. +.+..++..++..|.+.|++++|...|+++.+.. +.+..++..++.+|...|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998874 5678899999999999999999999999998764 3478899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHH
Q 048807 573 EMEDIGMTPNSVTYNTL------------ISFLSKSGNFSAARRVLKKMVKEGLVPT-----VVTYGALIHAFCVNGHVD 635 (757)
Q Consensus 573 ~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~ 635 (757)
++.+.. +.+...+..+ +..|.+.|++++|...|+++++. .|+ ...+..+..++.+.|+++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 999874 4455555555 78899999999999999999985 344 457888899999999999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH------------HHHc
Q 048807 636 EAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRP-NTNTYNAMFKG------------LRQK 702 (757)
Q Consensus 636 ~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~------------~~~~ 702 (757)
+|+..++++.+. .+.+...|..++.+|.+.|++++|...|+++.+. .| +...+..+..+ |...
T Consensus 313 ~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~l 388 (450)
T 2y4t_A 313 EAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKIL 388 (450)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHh
Confidence 999999998872 2346789999999999999999999999999984 45 45666666633 3333
Q ss_pred C-----CHHHHHHHHHHH-HHcCCCCCH-----------HHHHHHHHHHHhcCCHHHHH
Q 048807 703 N-----MLDKAFKLMDRM-IEHACHPDY-----------ISMEILTEWLSEAGQTEKLK 744 (757)
Q Consensus 703 g-----~~~~A~~~~~~~-~~~g~~p~~-----------~~~~~l~~~~~~~g~~~~A~ 744 (757)
| +.+++.+.|+++ ++ ..||. ..+..+..+|...|+.+++.
T Consensus 389 g~~~~~~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 389 GVKRNAKKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CSSTTCCTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred CCCccCCHHHHHHHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4 567778888874 43 23432 25666666777666655443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-23 Score=222.33 Aligned_cols=329 Identities=11% Similarity=0.050 Sum_probs=213.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
+.+...+..++..|.+.|++++|+.+|+++.+..+. +..+|..++.+|.+.|++++|.+.|+++++.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 445566666666777777777777777766665433 56666666666667777777777776666654 3345566666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCH---hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISVEPDV---IIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYN 412 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 412 (757)
+..|.+.|++++|.+.|+++++.. +.+. .++..++..+.. ..+.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~--------------------------~~~~ 147 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN-------PSENEEKEAQSQLIKSDEM--------------------------QRLR 147 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHH--------------------------HHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-------CCChhhHHHHHHHHHHHHH--------------------------HHHH
Confidence 666666666666666666666543 2333 444444444211 0122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048807 413 CLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVN 492 (757)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 492 (757)
.+...+.+.|++++|++.|+++.+.. +.+..++..++..|.+.|++++|.+.|+++.+... .+..+|..++..|...|
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 23445667788888888888777653 23667777778888888888888888887776533 36777777888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 048807 493 NFQEAIKWFDDMSRAGCSADSVVYFTL------------ISGLCQAGRMNDASLVVSKLKEAGFRPD----IVCYNHLIS 556 (757)
Q Consensus 493 ~~~~A~~~~~~m~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~ 556 (757)
++++|+..|+++.+.. +.+...+..+ +..+.+.|++++|...|+++.+.... + ...+..++.
T Consensus 226 ~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 226 DHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICH 303 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHH
Confidence 8888888888777653 3344444433 66677777777777777777665321 2 335667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 557 GFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALI 625 (757)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 625 (757)
++.+.|++++|...++++.+.. +.+..+|..++.+|...|++++|...++++++.. +-+...+..+.
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 7777777777777777776653 4466777777777777777777777777777642 11344444444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-23 Score=227.36 Aligned_cols=437 Identities=12% Similarity=0.073 Sum_probs=327.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..+...+.+.|++++|++.|+++.+.++. +..+|..++.+|.+.|++++|.+.|+++++.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 456788899999999999999999999998755 88999999999999999999999999999875 4567888999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGF 418 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (757)
+...|++++|+..|+ .+.. .|+ .....+..+...+...+|...++++.... .+..+........+..+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--------~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ 170 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--------NGD--FDGASIEPMLERNLNKQAMKVLNENLSKD-EGRGSQVLPSNTSLASF 170 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------------CHHHHHHHHHHHHHHHHHCC--------CCCCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--------CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhC-ccccccccchHhHHHHH
Confidence 999999999999996 4432 222 22233455666677788999998873110 00111111223344556
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH--------HcCChHHHHHHHHHHHHCCCCCC-------HHHHH
Q 048807 419 CKSGNIEKGLELFHLMKQEGVTPNVV-TLNTLVDGMC--------RHGRINSAVEFFQEVTRKGLCAN-------AVTYT 482 (757)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~--------~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~ 482 (757)
....+.+.+...+...... .+... ....+...+. ..|++++|..+++++.+.... + ..++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~ 247 (537)
T 3fp2_A 171 FGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALC 247 (537)
T ss_dssp HHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHH
Confidence 6677777666555443322 22211 2222322222 235788999999998876433 3 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 048807 483 ILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKK 562 (757)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 562 (757)
.+...+...|++++|...|+++.+.. |+...+..+...+...|++++|...++++.+... .+..++..+...|...|
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcC
Confidence 77788889999999999999998874 5578888899999999999999999999888743 36788999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048807 563 MLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFK 642 (757)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 642 (757)
++++|...++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 325 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999998875 5567888999999999999999999999998864 3356788889999999999999999999
Q ss_pred HhhhcC----CCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 643 ELSSSS----NVSPNTVIYNILIDSLCKN----------NQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKA 708 (757)
Q Consensus 643 ~~~~~~----~~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 708 (757)
++.+.. ........+..+...+.+. |++++|...|+++.+.. +.+...+..++.++.+.|++++|
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 876621 1111223355566778887 99999999999998752 44678899999999999999999
Q ss_pred HHHHHHHHHc
Q 048807 709 FKLMDRMIEH 718 (757)
Q Consensus 709 ~~~~~~~~~~ 718 (757)
.+.++++++.
T Consensus 482 ~~~~~~al~~ 491 (537)
T 3fp2_A 482 IELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999875
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-23 Score=230.48 Aligned_cols=427 Identities=12% Similarity=0.077 Sum_probs=330.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
...|..+...+.+.|++++|.+.|+++++.+ +.+..+|..+..+|.+.|++++|++.++++++.+ +.+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~ 96 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-------PDHSKAL 96 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CchHHHH
Confidence 5678889999999999999999999999875 5578889999999999999999999999999875 6678899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCCCHHHHH
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE------GVTPNVVTLN 447 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~ 447 (757)
..++..|...|++++|...|+.+. . +.......+..+...+...+|.+.++.+... ...|+.
T Consensus 97 ~~la~~~~~~g~~~~A~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~---- 164 (537)
T 3fp2_A 97 LRRASANESLGNFTDAMFDLSVLS----L----NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN---- 164 (537)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh----c----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----
Confidence 999999999999999999997442 1 1122233355566667778999999998764 122333
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH--------hcCCHHHHHHHHHHHHHcCCCCCH-----
Q 048807 448 TLVDGMCRHGRINSAVEFFQEVTRKGLCAN-AVTYTILITAFC--------NVNNFQEAIKWFDDMSRAGCSADS----- 513 (757)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~--------~~g~~~~A~~~~~~m~~~~~~~~~----- 513 (757)
..+..+....+.+.+...+...... .+. ......+...+. ..|++++|..+|+++.+.. +.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~ 241 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLREN 241 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHH
T ss_pred hHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHH
Confidence 3344455666666665544333322 112 112333333322 2357899999999998764 2332
Q ss_pred --hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 514 --VVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLIS 591 (757)
Q Consensus 514 --~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 591 (757)
.++..+...+...|++++|...++++.+. .|+...+..+...|...|++++|...++++.+.. +.+..++..+..
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 318 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQ 318 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHH
Confidence 35677778889999999999999999987 4568889999999999999999999999999875 567889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 048807 592 FLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVE 671 (757)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 671 (757)
.|...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+. .+.+...+..++..|.+.|+++
T Consensus 319 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 395 (537)
T 3fp2_A 319 MYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFD 395 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999864 235678899999999999999999999999883 3345678999999999999999
Q ss_pred HHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048807 672 LALSLMEEMKVKE-----VRPNTNTYNAMFKGLRQK----------NMLDKAFKLMDRMIEHACHPDYISMEILTEWLSE 736 (757)
Q Consensus 672 ~A~~~~~~m~~~g-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 736 (757)
+|...|+++.+.. .......+..+..++.+. |++++|...++++++. .+.+..++..++..+..
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~ 474 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKLQ 474 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 9999999988532 111223345566778888 9999999999999975 23456889999999999
Q ss_pred cCCHHHHHHHHhhc
Q 048807 737 AGQTEKLKKFVQGY 750 (757)
Q Consensus 737 ~g~~~~A~~~~~~~ 750 (757)
.|+.++|.+.+++.
T Consensus 475 ~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 475 MEKIDEAIELFEDS 488 (537)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHH
Confidence 99999999999884
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-18 Score=188.79 Aligned_cols=362 Identities=13% Similarity=0.070 Sum_probs=180.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh----cCChhHHHH
Q 048807 279 WDVLHVLMKFDAPLEAASCNALLNALGR----EGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK----LYRADEALE 350 (757)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~ 350 (757)
.+.+....+.| ++.++..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44444444432 45555555555555 556666666666555543 34445555555555 555555666
Q ss_pred HHHHHHhCCCCCcccccCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cC
Q 048807 351 VFEKMIAGKETAEISVEPDVIIFNTLIDGLCK----VGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK----SG 422 (757)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 422 (757)
.|++..+.+ +...+..|...|.. .+++++|.+.|++.. .. .+...+..+...|.. .+
T Consensus 101 ~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~---~~---~~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 101 WYKKAALKG---------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAA---EQ---GRDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp HHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH---HT---TCHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH---HC---CCHHHHHHHHHHHHcCCCCCC
Confidence 555555432 34455555555555 455555555555543 11 234445555555544 44
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 048807 423 NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR----HGRINSAVEFFQEVTRKGLCANAVTYTILITAFCN----VNNF 494 (757)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 494 (757)
+.++|++.|++..+.| +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|.. .+++
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 5555555555555442 34444445544444 455555555555554432 33344444444443 4445
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 048807 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCK----KKMLDKAYEV 570 (757)
Q Consensus 495 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~ 570 (757)
++|..+|++..+.+ +.. .+..+...|.. .++.++|...
T Consensus 240 ~~A~~~~~~a~~~~---~~~-----------------------------------a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSI-----------------------------------AQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHHHHTTT---CHH-----------------------------------HHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHH-----------------------------------HHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 55555554444432 333 34444444444 4555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 048807 571 LQEMEDIGMTPNSVTYNTLISFLSKS-----GNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNG---HVDEAMKIFK 642 (757)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~ 642 (757)
|++..+.| +...+..|...|... +++++|...|++..+.+ +...+..+...|...| ++++|++.|+
T Consensus 282 ~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~ 355 (490)
T 2xm6_A 282 YRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFR 355 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 55554443 333444444444444 45555555555555542 3344444444444434 4555555555
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 048807 643 ELSSSSNVSPNTVIYNILIDSLCK----NNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQ----KNMLDKAFKLMDR 714 (757)
Q Consensus 643 ~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 714 (757)
+..+ . .+...+..|...|.. .+++++|...|++..+.| +...+..+...|.+ .++.++|...|++
T Consensus 356 ~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 356 KAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 5554 1 234445555555555 455555555555555532 34455555555554 4555555555555
Q ss_pred HHHc
Q 048807 715 MIEH 718 (757)
Q Consensus 715 ~~~~ 718 (757)
+.+.
T Consensus 429 A~~~ 432 (490)
T 2xm6_A 429 ASTN 432 (490)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 5554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-19 Score=187.94 Aligned_cols=331 Identities=12% Similarity=0.032 Sum_probs=211.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
|+..+..+...+.+.|++++|+..|+++.+.++. +..+|..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 4557788999999999999999999999988654 78999999999999999999999999999874 446678899999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCccccc---CCHhHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhhcC
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVE---PDVIIFNTL------------IDGLCKVGKQEEALGLIEQMRLRLQK 402 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~ 402 (757)
.+...|++++|...++++++.. + .+...+..+ ...+...|++++|.+.++++..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---- 148 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-------PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE---- 148 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHHHcCChHHHHHHHHHHHhcC-------CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----
Confidence 9999999999999999999864 3 345555544 3455555555555555555531
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048807 403 GCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYT 482 (757)
Q Consensus 403 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 482 (757)
..+.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.... +...+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 226 (359)
T 3ieg_A 149 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFA 226 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHH
Confidence 123345555555555555555555555555555542 224445555555555555555555555555543221 222211
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHH
Q 048807 483 ILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDI----VCYNHLISGF 558 (757)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~ 558 (757)
.+... . .......+...+.+.|++++|...++++.+.... +. ..+..+...+
T Consensus 227 ~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 227 HYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHH
T ss_pred HHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHH
Confidence 11000 0 0001112344566666677776666666665322 22 2244566667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048807 559 CKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFC 629 (757)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 629 (757)
.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+++++.. +.+...+..+..+..
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 77777777777777776653 4466677777777777777777777777777643 223455555555544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.6e-18 Score=184.61 Aligned_cols=362 Identities=14% Similarity=0.067 Sum_probs=265.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHH
Q 048807 243 LVGLVSKFAEHGVFPNAVWLTQLITRFCR----KGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGR----EGDFKRMN 314 (757)
Q Consensus 243 ~~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 314 (757)
.+..+....+.| +...+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 345555555554 78899999999998 899999999999999874 77899999999999 99999999
Q ss_pred HHHHHHHHCCCCCccchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHH----cCCH
Q 048807 315 QLFTEMKENDIEPSVVTFGTIINRLCK----LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCK----VGKQ 386 (757)
Q Consensus 315 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 386 (757)
+.|++..+.| +...+..|...|.. .+++++|++.|++..+.+ +..++..|...|.. .++.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---------RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCH
Confidence 9999999876 66778888888888 889999999999998765 67888999999988 8899
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 048807 387 EEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK----SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR----HGR 458 (757)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~ 458 (757)
++|.+.|++.. .. .+...+..+...|.. .++.++|.++|++..+.| +...+..+...|.. .++
T Consensus 168 ~~A~~~~~~a~---~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 168 VMAREWYSKAA---EQ---GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp HHHHHHHHHHH---HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHHH---HC---CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 99999999985 32 478899999999998 899999999999999875 67788889988887 899
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----CCh
Q 048807 459 INSAVEFFQEVTRKGLCANAVTYTILITAFCN----VNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQA-----GRM 529 (757)
Q Consensus 459 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~ 529 (757)
+++|..+|++..+.+ +...+..+...|.. .++.++|+..|++..+.| +...+..+...|... +++
T Consensus 239 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCH
Confidence 999999999998874 56677778888877 788888888888887764 555666666666655 566
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 048807 530 NDASLVVSKLKEAGFRPDIVCYNHLISGFCKKK---MLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK----SGNFSAA 602 (757)
Q Consensus 530 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 602 (757)
++|...|++..+.| +...+..+...|...| ++++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 313 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 313 EQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 66666666655543 3344455555554433 4455555555555442 34444444444444 4445555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhh
Q 048807 603 RRVLKKMVKEGLVPTVVTYGALIHAFCV----NGHVDEAMKIFKELSS 646 (757)
Q Consensus 603 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 646 (757)
...|++..+.+ +...+..|...|.. .+++++|...|++..+
T Consensus 387 ~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 387 AIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 55555444432 23344444444444 4444444444444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-19 Score=184.34 Aligned_cols=333 Identities=13% Similarity=0.072 Sum_probs=220.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVII 372 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
++..+..+...+.+.|++++|...|+++++.. +.+..++..+...+...|++++|+..++++++.. +.+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-------MDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCcchH
Confidence 45677778888888888888888888888764 4456777888888888888888888888888754 446778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCM---PNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTL 449 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 449 (757)
+..+...|...|++++|...++++. ...+ .+...+..+...+. ...+..+
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~ 126 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVL----KSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQ 126 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH----TSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHH----hcCCcccChHHHHHHHHHHHH-----------------------HHHHHHH
Confidence 8888888888888888888888874 2222 24444444421100 0012222
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 048807 450 VDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRM 529 (757)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 529 (757)
...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 3444455555555555555544422 244445555555555555555555555554432 33444555555555555555
Q ss_pred hHHHHHHHHHHHCCCCCCHHH------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHH
Q 048807 530 NDASLVVSKLKEAGFRPDIVC------------YNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSV----TYNTLISFL 593 (757)
Q Consensus 530 ~~A~~~~~~~~~~g~~~~~~~------------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~ 593 (757)
++|...+++..+.... +... ...+...+.+.|++++|...++++.+.. +.+.. .+..+...+
T Consensus 205 ~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 205 ELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHH
Confidence 5555555555443211 2222 2234677899999999999999999875 33432 355678899
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhc
Q 048807 594 SKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKN 667 (757)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 667 (757)
.+.|++++|...++++++.. +.+..++..+...|...|++++|...|+++.+. .+.+...+..+..+....
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHH
Confidence 99999999999999999863 347889999999999999999999999999882 233466777777766543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-16 Score=176.15 Aligned_cols=532 Identities=12% Similarity=0.085 Sum_probs=347.3
Q ss_pred cCCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhhHHH
Q 048807 125 ERMSPESLFDLYKACKDQN--IPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFN 202 (757)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 202 (757)
..|.+.+|+++++++.-.+ +..+....+.|+.+..+. +.........++. .+....++..+...|.+++|..
T Consensus 997 ~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-----~~d~~eIA~Iai~lglyEEAf~ 1070 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-----NYDAPDIANIAISNELFEEAFA 1070 (1630)
T ss_pred hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-----hccHHHHHHHHHhCCCHHHHHH
Confidence 4677788888888876332 123445666666666665 3344444444432 1224557888889999999999
Q ss_pred HHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 048807 203 VLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVL 282 (757)
Q Consensus 203 ~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 282 (757)
+|++.... ......++..+ ...++|.++.+++ .+..+|..+..++.+.|++++|++.|
T Consensus 1071 IYkKa~~~-------~~A~~VLie~i---------~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1071 IFRKFDVN-------TSAVQVLIEHI---------GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HHHHcCCH-------HHHHHHHHHHH---------hhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99986311 11111122111 2236676666654 35778999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 048807 283 HVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETA 362 (757)
Q Consensus 283 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 362 (757)
.+. .|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++.. -| ++
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele-~f---I~----- 1191 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELE-EF---IN----- 1191 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHH-HH---Hh-----
Confidence 774 378889999999999999999999999888764 44444556889999999988533 33 22
Q ss_pred cccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048807 363 EISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN 442 (757)
Q Consensus 363 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 442 (757)
.++...|..+...|...|++++|..+|... ..|..++..|++.|++++|.+.+++.. +
T Consensus 1192 ----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------------~ny~rLA~tLvkLge~q~AIEaarKA~------n 1249 (1630)
T 1xi4_A 1192 ----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKAN------S 1249 (1630)
T ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------------hHHHHHHHHHHHhCCHHHHHHHHHHhC------C
Confidence 356677888999999999999999999976 279999999999999999999999873 6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 048807 443 VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISG 522 (757)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 522 (757)
..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++..+... +.....|+-+...
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiL 1323 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHH
Confidence 7899999999999999999988765432 366677789999999999999999998887654 4455566666666
Q ss_pred HHhc--CChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHhCCCCC
Q 048807 523 LCQA--GRMNDASLVVSKLKEAGFRP------DIVCYNHLISGFCKKKMLDKAYEVL-------------QEMEDIGMTP 581 (757)
Q Consensus 523 ~~~~--g~~~~A~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~~-------------~~~~~~~~~~ 581 (757)
|++. ++..++.++|..-.. +++ +...|..++..|.+.|+++.|.... ...... ..
T Consensus 1324 yaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~ 1399 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VA 1399 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cc
Confidence 6654 455666666654322 222 4567999999999999999988322 222222 44
Q ss_pred CHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHhcCCHHH
Q 048807 582 NSVTYNTLISFLSKSG---------------NFSAARRVLKKMVKE----------GLVPTVVTYGALIHAFCVNGHVDE 636 (757)
Q Consensus 582 ~~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~----------~~~p~~~~~~~li~~~~~~g~~~~ 636 (757)
|...|...+..|...+ +.+++.++|.+.-.. ...-+...-.++...|....+++.
T Consensus 1400 n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~ 1479 (1630)
T 1xi4_A 1400 NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 1479 (1630)
T ss_pred cHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHH
Confidence 6667777777776555 555555555421100 000111222223333333333221
Q ss_pred HHHHHHHhhh------cCCCCC-CHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 637 AMKIFKELSS------SSNVSP-NTVIYNIL-IDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKA 708 (757)
Q Consensus 637 A~~~~~~~~~------~~~~~p-~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 708 (757)
-....+.... ...+.. +..-+.-+ ...|.+.|+|.+|.+++++.. .|.-.+.+..++|+.+.+
T Consensus 1480 Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~---------l~~dAm~~a~~S~d~e~~ 1550 (1630)
T 1xi4_A 1480 LRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDS---------LYKDAMQYASESKDTELA 1550 (1630)
T ss_pred HHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhcc---------CHHHHHHHHHHcCCHHHH
Confidence 1111110000 000011 11112222 334455588888888887643 244556777888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048807 709 FKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKK 745 (757)
Q Consensus 709 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 745 (757)
.+++.-..+. -+...|...+-.|...-+.+-+.+
T Consensus 1551 e~ll~~F~~~---~~~E~f~a~Ly~cy~l~~pd~vle 1584 (1630)
T 1xi4_A 1551 EELLQWFLQE---EKRECFGACLFTCYDLLRPDVVLE 1584 (1630)
T ss_pred HHHHHHHHhc---CChhHHHHHHHHHhccCCchHHHH
Confidence 8887777754 344566666666666555444443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-17 Score=184.83 Aligned_cols=422 Identities=11% Similarity=0.051 Sum_probs=248.9
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
|.|..+|..++. +.+.|++++|..+|+++++..|. +...|...+..+.+.|++++|.++|++++... |+...|...
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 446666776776 36667777777777777765433 56667777777777777777777777776652 455555555
Q ss_pred HHHH-HhcCChhHHHH----HHHHHHhCCCCCcccc-cCCHhHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhh
Q 048807 336 INRL-CKLYRADEALE----VFEKMIAGKETAEISV-EPDVIIFNTLIDGLCK---------VGKQEEALGLIEQMRLRL 400 (757)
Q Consensus 336 i~~~-~~~g~~~~A~~----~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~ 400 (757)
+... ...|+.++|.+ +|++++..- +. +++...|...+....+ .|++++|..+|++..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~-----g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al--- 157 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKI-----GMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC--- 157 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHT-----TTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH---
Confidence 5322 33455555554 555544321 11 1234556666665544 456666666666652
Q ss_pred cCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH------HHC
Q 048807 401 QKGCMPN--AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEV------TRK 472 (757)
Q Consensus 401 ~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~ 472 (757)
. .+.+ ...|..........|. .+...++. .+.++++.|..++.++ .+.
T Consensus 158 -~-~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~ 213 (530)
T 2ooe_A 158 -V-NPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDR 213 (530)
T ss_dssp -T-SCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred -h-chhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 1111 1222221111000000 00000110 0234455565555542 221
Q ss_pred C---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-------c
Q 048807 473 G---LCAN--------AVTYTILITAFCNV----NNF----QEAIKWFDDMSRAGCSADSVVYFTLISGLCQ-------A 526 (757)
Q Consensus 473 ~---~~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~ 526 (757)
. ++|+ ...|...+...... ++. +.+..+|++++... +.+...|..++..+.+ .
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~ 292 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEK 292 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhc
Confidence 1 2232 23454444332221 122 36677787777653 4567777777777765 6
Q ss_pred CChh-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCC
Q 048807 527 GRMN-------DASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNS-VTYNTLISFLSKSGN 598 (757)
Q Consensus 527 g~~~-------~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~ 598 (757)
|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|+
T Consensus 293 g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 293 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcC
Confidence 7776 788888887762223357778888888888888888888888888763 2233 477777777778888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 599 FSAARRVLKKMVKEGLVPTVVTYGALIHA-FCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLM 677 (757)
Q Consensus 599 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 677 (757)
+++|..+|++.++.. +.+...+...+.. +...|+.++|..+|++..+. .+.+...|..++..+.+.|+.++|..+|
T Consensus 372 ~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 372 IKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 888888888888752 1223333322222 33578888888888877762 2335677888888888888888888888
Q ss_pred HHHHhCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 678 EEMKVKE-VRPN--TNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 678 ~~m~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
++....+ ..|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8887742 1222 346777777777788888888888887763
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-16 Score=176.60 Aligned_cols=421 Identities=12% Similarity=0.134 Sum_probs=313.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDA--PLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGT 334 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 334 (757)
.|+.-....+.+|...|.+.+|+++++++...+. ..+....+.++....+. +..+..++..+.... ....
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHH
Confidence 3444556678899999999999999999984421 13456777788777776 556666666655422 1344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 335 IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 335 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
+...+...|.+++|..+|++.. ......+.++. ..|++++|.++.++. .+..+|..+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----------~~~~A~~VLie---~i~nldrAiE~Aerv---------n~p~vWsqL 1111 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----------VNTSAVQVLIE---HIGNLDRAYEFAERC---------NEPAVWSQL 1111 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----------CHHHHHHHHHH---HHhhHHHHHHHHHhc---------CCHHHHHHH
Confidence 7778889999999999999862 22333344433 778999999998876 257789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 415 INGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNF 494 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 494 (757)
..++.+.|++++|++.|.+. -|...|..++..+.+.|++++|.+.+....+.. +++...+.++.+|++.+++
T Consensus 1112 AKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRL 1183 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCH
Confidence 99999999999999999664 377888999999999999999999999888764 3444445689999999988
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEM 574 (757)
Q Consensus 495 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (757)
++.... ++ .++...|..+...|...|++++|..+|... ..|..++..|.+.|++++|.+.+++.
T Consensus 1184 eele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1184 AELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 853333 22 346677778999999999999999999875 36899999999999999999999876
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 048807 575 EDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654 (757)
Q Consensus 575 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 654 (757)
.+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++.... .. +-..
T Consensus 1248 ------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~-Le-raH~ 1314 (1630)
T 1xi4_A 1248 ------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG-LE-RAHM 1314 (1630)
T ss_pred ------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cC-hhHh
Confidence 366889999999999999999988776532 3566677889999999999999999987765 22 2334
Q ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHHcCCHHHHHHH-------------HH
Q 048807 655 VIYNILIDSLCKN--NQVELALSLMEEMKVKEVRP------NTNTYNAMFKGLRQKNMLDKAFKL-------------MD 713 (757)
Q Consensus 655 ~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~~A~~~-------------~~ 713 (757)
..|+-|..+|++. ++..++.++|..-.. ++| +...|..++-.|.+.|+++.|... |+
T Consensus 1315 gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk 1392 (1630)
T 1xi4_A 1315 GMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFK 1392 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHH
Confidence 4677777777764 467777777765433 333 456788899999999999988832 22
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHhh
Q 048807 714 RMIEHACHPDYISMEILTEWLSEAG---------------QTEKLKKFVQG 749 (757)
Q Consensus 714 ~~~~~g~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~ 749 (757)
..+. -..|...|...+..|...+ +.+++.+++++
T Consensus 1393 ~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1393 DIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred HHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence 2221 2345666666666666655 66677666664
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-18 Score=178.57 Aligned_cols=200 Identities=14% Similarity=0.084 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVII 372 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
+...+..++..+...|++++|.++|+++.+.. +.+...+..++..+...|++++|...++++++.. +.+..+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~ 92 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-------PSNPVS 92 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTSTHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHHH
Confidence 34445555555556666666666666665543 3344445555555566666666666666665543 344555
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 373 FNTLIDGLCKVG-KQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVD 451 (757)
Q Consensus 373 ~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 451 (757)
|..+...+...| ++++|.+.|+++. ...+.+...|..+...+...|++++|++.++++.+.... +...+..+..
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 167 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKAT----TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHH----TTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH----HhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHH
Confidence 666666666666 6666666666552 222334555666666666666666666666665554221 3344555555
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048807 452 GMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSR 506 (757)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (757)
.+...|++++|...++++.+.... +..++..+...|...|++++|...++++.+
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 555666666666666655554322 445555555555556666666555555544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-18 Score=177.15 Aligned_cols=287 Identities=13% Similarity=0.020 Sum_probs=174.1
Q ss_pred CCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC
Q 048807 326 EPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCM 405 (757)
Q Consensus 326 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 405 (757)
+.+...+..++..+...|++++|+++|+++++.+ +.+...+..++..+...|++++|..+++++.. ..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~ 87 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-------PFHASCLPVHIGTLVELNKANELFYLSHKLVD----LYP 87 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH----HCT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH----hCc
Confidence 4456666777777777788888888888877754 45556666677777777888888888777742 234
Q ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 048807 406 PNAVTYNCLINGFCKSG-NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTIL 484 (757)
Q Consensus 406 ~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 484 (757)
.+...|..+...+...| ++++|.+.|+++.+... .+...+..+...+...|++++|...++++.+.... +...+..+
T Consensus 88 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 165 (330)
T 3hym_B 88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYI 165 (330)
T ss_dssp TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHH
Confidence 45667777777777777 77777777777776532 24566777777777777777777777777665433 34455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--------CCCCHHHHHHHHH
Q 048807 485 ITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAG--------FRPDIVCYNHLIS 556 (757)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--------~~~~~~~~~~li~ 556 (757)
...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+..
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 666777777777777777666553 3445566666666666666666666666555421 0122344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 557 GFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAF 628 (757)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 628 (757)
.|...|++++|...++++.+.. +.+...+..+...|.+.|++++|...++++++.. +.+...+..+..++
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 5555555555555555555443 2334444555555555555555555555544432 11334444444443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-17 Score=179.19 Aligned_cols=413 Identities=8% Similarity=0.007 Sum_probs=273.3
Q ss_pred ccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCChhHHHH
Q 048807 237 SVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNAL-GREGDFKRMNQ 315 (757)
Q Consensus 237 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~ 315 (757)
.+..+++..+++++++. .|.+...|..++..+.+.|++++|.++|+++++.. |++..|...+... ...|+.++|.+
T Consensus 25 ~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp SSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred hCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHH
Confidence 45678899999999887 57788899999999999999999999999999875 4788888888543 46788888776
Q ss_pred ----HHHHHHHC-CCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHc-----CC
Q 048807 316 ----LFTEMKEN-DIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKV-----GK 385 (757)
Q Consensus 316 ----~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~ 385 (757)
+|++.+.. |..|+.. .+-..|.+ ++.. ....+ .-....-+......|.+. ..
T Consensus 102 ~~~~~~~~al~~~g~~~~~~---~~w~~~~~---~~~~------~~~~~------~~~~~~~~~~a~~~y~~al~~P~~~ 163 (530)
T 2ooe_A 102 KMAQAYDFALDKIGMEIMSY---QIWVDYIN---FLKG------VEAVG------SYAENQRITAVRRVYQRGCVNPMIN 163 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTCH---HHHHHHHH---HHHH------SCCCS------STTHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHHHHCCCCcccH---HHHHHHHH---HHhc------CCCcc------cHHHHhHHHHHHHHHHHHHhchhhh
Confidence 67666553 5444431 12222322 1111 00000 000000111111111110 11
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HhCC---CCCC--------HHHHHH
Q 048807 386 QEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLM------KQEG---VTPN--------VVTLNT 448 (757)
Q Consensus 386 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g---~~p~--------~~~~~~ 448 (757)
.+.....+..+... .+..+...++. .+.+++++|..++..+ .+.. ++|+ ...|..
T Consensus 164 ~~~~~~~~~~~e~~------~~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 164 IEQLWRDYNKYEEG------INIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp HHHHHHHHHHHHHH------HCHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh------hchhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 11111111111100 01111222221 1235566777666652 2221 2333 234555
Q ss_pred HHHHHHHc----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHH
Q 048807 449 LVDGMCRH----GRI----NSAVEFFQEVTRKGLCANAVTYTILITAFCN-------VNNFQ-------EAIKWFDDMSR 506 (757)
Q Consensus 449 li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~ 506 (757)
.+...... ++. +++..+|++++...+ .+...|..++..+.+ .|+++ +|..+|++.++
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 55433322 232 367788998888633 378888888888775 68876 89999999986
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048807 507 AGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPD-I-VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSV 584 (757)
Q Consensus 507 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 584 (757)
.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+.. +.+..
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~ 391 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHH 391 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTH
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchH
Confidence 333557888999999999999999999999999986 443 3 589999999999999999999999999863 33333
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC--HHHHHHHH
Q 048807 585 TYNTLISF-LSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN--TVIYNILI 661 (757)
Q Consensus 585 ~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~li 661 (757)
.|...+.. +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++........|+ ...|...+
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~ 470 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 470 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 33333222 346899999999999998863 336788999999999999999999999999883333332 45788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 048807 662 DSLCKNNQVELALSLMEEMKVK 683 (757)
Q Consensus 662 ~~~~~~g~~~~A~~~~~~m~~~ 683 (757)
....+.|+.+.+..+++++.+.
T Consensus 471 ~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 471 AFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888999999999999998863
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-18 Score=180.57 Aligned_cols=305 Identities=12% Similarity=0.016 Sum_probs=180.2
Q ss_pred HHcCChhHHHH-HHHHHHHCCCC-C--ccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHH
Q 048807 305 GREGDFKRMNQ-LFTEMKENDIE-P--SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGL 380 (757)
Q Consensus 305 ~~~g~~~~A~~-~~~~m~~~g~~-p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 380 (757)
...|++++|.+ .|++....... | +...+..+...+.+.|++++|+..|+++++.. +.+..++..++..|
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~ 108 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQ 108 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 34477888887 77766543211 1 34567778888888888888888888888764 56777888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 048807 381 CKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRIN 460 (757)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 460 (757)
.+.|++++|.+.|+++.. ..+.+..++..++..|...|++++|++.++++.+.... +...+..+... .
T Consensus 109 ~~~g~~~~A~~~~~~al~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~ 176 (368)
T 1fch_A 109 AENEQELLAISALRRCLE----LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------A 176 (368)
T ss_dssp HHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-------------
T ss_pred HHCcCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------h
Confidence 888888888888888742 23557778888888888888888888888888876422 22222111000 0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 048807 461 SAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSA-DSVVYFTLISGLCQAGRMNDASLVVSKL 539 (757)
Q Consensus 461 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 539 (757)
.. .. ....+..+...+ ..|++++|...|+++.+..... +..++..+...+...|++++|...++++
T Consensus 177 ~~-----------~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 177 GG-----------AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp ---------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hh-----------hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 00 00 000111122222 5556666666666665543111 3555666666666666666666666665
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---
Q 048807 540 KEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVP--- 616 (757)
Q Consensus 540 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--- 616 (757)
.+.. +.+..++..++..|...|++++|...|+++.+.. +.+..++..+...|.+.|++++|...|+++++.....
T Consensus 244 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 244 LSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred HHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 5542 2245566666666666666666666666666553 4455666666666666667777666666665532110
Q ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 617 -------TVVTYGALIHAFCVNGHVDEAMKIFKE 643 (757)
Q Consensus 617 -------~~~~~~~li~~~~~~g~~~~A~~~~~~ 643 (757)
...+|..+..+|...|+.++|..++++
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 145666777777777777777666553
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-18 Score=178.80 Aligned_cols=305 Identities=13% Similarity=0.023 Sum_probs=167.3
Q ss_pred HHHcCChhHHHH-HHHHHHhCCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 269 FCRKGKTDEAWD-VLHVLMKFDAP---LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 269 ~~~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
+.-.|++++|.+ .|++..+..+. .+...+..+...+.+.|++++|...|+++++.. +.+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888888 88876655432 135667888888999999999999999998875 4466778888888999999
Q ss_pred hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH
Q 048807 345 ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNI 424 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (757)
+++|++.|+++++.+ +.+..++..++..|...|++++|.+.++++.. ..+.+...+..+...
T Consensus 114 ~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~------- 175 (368)
T 1fch_A 114 ELLAISALRRCLELK-------PDNQTALMALAVSFTNESLQRQACEILRDWLR----YTPAYAHLVTPAEEG------- 175 (368)
T ss_dssp HHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TSTTTGGGCC------------
T ss_pred HHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCcHHHHHHHHHH-------
Confidence 999999999988864 56788888999999999999999999988852 222333333211000
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048807 425 EKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCA-NAVTYTILITAFCNVNNFQEAIKWFDD 503 (757)
Q Consensus 425 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (757)
.. . ..+ ...+..+...+ ..|++++|...++++.+..... +..++..+...|.+.|++++|+..|++
T Consensus 176 ~~-------~----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 176 AG-------G----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp ----------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hh-------h----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00 0 000 00011111111 4444444444444444432211 244444444555555555555555554
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 048807 504 MSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPN- 582 (757)
Q Consensus 504 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~- 582 (757)
+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...|+++.+.. +.+
T Consensus 243 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 319 (368)
T 1fch_A 243 ALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSR 319 (368)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC-
T ss_pred HHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCC
Confidence 44432 2334445555555555555555555555544432 1234455555555555555555555555554432 111
Q ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048807 583 ----------SVTYNTLISFLSKSGNFSAARRVLKK 608 (757)
Q Consensus 583 ----------~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (757)
..+|..+..+|...|++++|..++++
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 320 GPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 45566666666666666666655543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.9e-17 Score=174.60 Aligned_cols=391 Identities=10% Similarity=-0.035 Sum_probs=245.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc---------CC-CcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCC
Q 048807 145 PLSINSATLLIRFFGKVSMYDYSLLVYNELDNN---------LR-NTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQF 214 (757)
Q Consensus 145 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 214 (757)
+.....|+.|...+...|++++|++.|+++... .+ ...+|+.++.+|...|++++|+..|+++......+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334567999999999999999999999876431 22 23578999999999999999999999886521000
Q ss_pred CCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CChhHHHHHHHHHHhCCCCC
Q 048807 215 PVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRK--GKTDEAWDVLHVLMKFDAPL 292 (757)
Q Consensus 215 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~ 292 (757)
. ...-.....++..+..++.+. +++++|++.|+++.+.++.
T Consensus 128 --------------------~----------------~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~- 170 (472)
T 4g1t_A 128 --------------------S----------------SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK- 170 (472)
T ss_dssp --------------------C----------------CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-
T ss_pred --------------------c----------------cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-
Confidence 0 000112344555555555554 4689999999999988755
Q ss_pred CHHHHHHHHHHH---HHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCccc
Q 048807 293 EAASCNALLNAL---GREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK----LYRADEALEVFEKMIAGKETAEIS 365 (757)
Q Consensus 293 ~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 365 (757)
+...+..+..++ ...++.++|++.|++.++.+ +.+..++..+...+.. .|+.++|.+.+++.+...
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~------ 243 (472)
T 4g1t_A 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA------ 243 (472)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC------
Confidence 677776666553 45678889999999988864 3355566666555544 467889999999988865
Q ss_pred ccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048807 366 VEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVT 445 (757)
Q Consensus 366 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 445 (757)
+.+..++..+...|...|++++|.+.+++.. ...+.+..++..+...|...+....+..
T Consensus 244 -~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~lg~~y~~~~~~~~~~~---------------- 302 (472)
T 4g1t_A 244 -PGVTDVLRSAAKFYRRKDEPDKAIELLKKAL----EYIPNNAYLHCQIGCCYRAKVFQVMNLR---------------- 302 (472)
T ss_dssp -SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHSTTCHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred -ccHHHHHHHHHHHHHHcCchHHHHHHHHHHH----HhCCChHHHHHHHHHHHHHHHHHhhhHH----------------
Confidence 6678889999999999999999999999984 2345567788887777654321111100
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh--hHHHHHH-H
Q 048807 446 LNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSV--VYFTLIS-G 522 (757)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~-~ 522 (757)
...........+.+++|...++++.+.... +..++..+...|...|++++|+..|++.++....+... .+..+.. .
T Consensus 303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~ 381 (472)
T 4g1t_A 303 ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381 (472)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 000001111223356677777777665432 44566677777888888888888888777654222211 1222222 2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 523 LCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAA 602 (757)
Q Consensus 523 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 602 (757)
..+.|++++|+..|++..+. .|+..... +....+..++++..+.+ +.+..+|..+...|...|++++|
T Consensus 382 ~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 382 LYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp HHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--
T ss_pred HHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34667888888888887775 33332221 12234455566666554 56777888888888888888888
Q ss_pred HHHHHHHHhCC
Q 048807 603 RRVLKKMVKEG 613 (757)
Q Consensus 603 ~~~~~~m~~~~ 613 (757)
++.|++.++.+
T Consensus 450 ~~~y~kALe~~ 460 (472)
T 4g1t_A 450 DEDSERGLESG 460 (472)
T ss_dssp -----------
T ss_pred HHHHHHHHhcC
Confidence 88888888754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-18 Score=179.83 Aligned_cols=263 Identities=10% Similarity=-0.001 Sum_probs=186.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048807 480 TYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFC 559 (757)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 559 (757)
.+..+...+.+.|++++|+..|+++++.. +.+..+|..+...+...|++++|...|+++.+.. +.+..++..++..|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 35555666666666666666666666543 3455666666666666666666666666666553 224566666666677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHH
Q 048807 560 KKKMLDKAYEVLQEMEDIGMTP----------NSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLV-PTVVTYGALIHAF 628 (757)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~ 628 (757)
..|++++|...|+++.+.. +. ....+..+...+.+.|++++|...++++++.... ++..++..+...|
T Consensus 145 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 7777777777776666542 11 1223345577888889999999999998876422 1578888899999
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 629 CVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKA 708 (757)
Q Consensus 629 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 708 (757)
...|++++|+..++++.+. .+.+..+|..++.+|.+.|++++|+..|+++.+.. +.+..+|..++.+|.+.|++++|
T Consensus 224 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999998872 33567789999999999999999999999998752 33578899999999999999999
Q ss_pred HHHHHHHHHcCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 709 FKLMDRMIEHACHP-------------DYISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 709 ~~~~~~~~~~g~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
...++++++. .| +..+|..+..++...|+.+.+.+..++-
T Consensus 301 ~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 301 VSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999864 22 2478899999999999999999988763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.9e-18 Score=177.53 Aligned_cols=275 Identities=10% Similarity=-0.035 Sum_probs=153.8
Q ss_pred ccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC
Q 048807 328 SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN 407 (757)
Q Consensus 328 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 407 (757)
+...+..+...+.+.|++++|++.|+++++.. +.+..+|..++..|.+.|++++|++.|+++.. ..+.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~ 132 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLE----LQPNN 132 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCC
Confidence 44557777788888888888888888887764 55677788888888888888888888887742 23456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048807 408 AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNV-VTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILIT 486 (757)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 486 (757)
..+|..++..|...|++++|++.|+++.+.. |+. ..+..+. .....+..+..
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~ 185 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSK 185 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-----------------------------------------
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHH
Confidence 7778888888888888888888888777642 111 1111110 01112233344
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 487 AFCNVNNFQEAIKWFDDMSRAGCSA--DSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKML 564 (757)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 564 (757)
.+...|++++|+..|+++.+.. +. +..++..+...+...|++++|...++++.+.. +.+..+|..+..+|.+.|++
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 4444444555555554444432 11 34444555555555555555555555544432 22344555555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCC
Q 048807 565 DKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLV-----------PTVVTYGALIHAFCVNGH 633 (757)
Q Consensus 565 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~ 633 (757)
++|...|+++.+.. +.+..++..+...|.+.|++++|...|+++++.... .+...|..+..++...|+
T Consensus 264 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 264 EEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 55555555555543 334555555555566666666666666555542100 023456666666666666
Q ss_pred HHHHHHHHHH
Q 048807 634 VDEAMKIFKE 643 (757)
Q Consensus 634 ~~~A~~~~~~ 643 (757)
.+.+.++.++
T Consensus 343 ~~~a~~~~~~ 352 (365)
T 4eqf_A 343 PELFQAANLG 352 (365)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 6666665544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-16 Score=173.30 Aligned_cols=386 Identities=13% Similarity=-0.049 Sum_probs=249.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKF--------DAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN---- 323 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 323 (757)
......||.|...|...|++++|++.|++..+. ..+...++|+.+...|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344568999999999999999999999988653 11225688999999999999999999999987652
Q ss_pred -C-CCC-ccchHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHH---HHcCCHHHHHHHHHH
Q 048807 324 -D-IEP-SVVTFGTIINRLCKL--YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGL---CKVGKQEEALGLIEQ 395 (757)
Q Consensus 324 -g-~~p-~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~ 395 (757)
+ ..+ ...++..+..++.+. +++++|++.|+++++.+ |.+...+..+...+ ...++.++|++.+++
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-------p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-------PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 1 011 234555555556554 46899999999999864 44566666665553 456777889988888
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048807 396 MRLRLQKGCMPNAVTYNCLINGFCK----SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTR 471 (757)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 471 (757)
... -.+.+..++..+...+.. .|+.++|.+.+++..+.. +.+..++..+...|...|++++|...++++.+
T Consensus 201 al~----l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 201 AIR----LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHH----HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hhh----cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 742 235567777776665554 467788999999888764 33677888999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 048807 472 KGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCY 551 (757)
Q Consensus 472 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 551 (757)
..+. +..++..+...|...+....+.. ...........+.+++|...++...+... .+..++
T Consensus 276 ~~p~-~~~~~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~ 337 (472)
T 4g1t_A 276 YIPN-NAYLHCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVC 337 (472)
T ss_dssp HSTT-CHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCH
T ss_pred hCCC-hHHHHHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhh
Confidence 7543 66777777766643221111100 00011111122345778888888776532 245567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 552 NHLISGFCKKKMLDKAYEVLQEMEDIGMTPNS--VTYNTLIS-FLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAF 628 (757)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 628 (757)
..+...|...|++++|.+.|++.++....+.. ..+..+.. .+...|++++|+..|++.++. .|+......
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~----- 410 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK----- 410 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH-----
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH-----
Confidence 78888888899999999999888877432221 12333332 234678899999999988875 454332222
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 048807 629 CVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKE 684 (757)
Q Consensus 629 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 684 (757)
....+.++++...+. -+.+..+|..++.+|...|++++|++.|++.++.+
T Consensus 411 ----~~~~l~~~~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 411 ----MKDKLQKIAKMRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp ----HHHHHHHHHHHHHHH--CC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred ----HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 233445555555551 23456688899999999999999999999988753
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-17 Score=171.68 Aligned_cols=282 Identities=13% Similarity=0.126 Sum_probs=127.4
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHH
Q 048807 271 RKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALE 350 (757)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 350 (757)
+.|++++|.++++++. +..+|..++.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6688999999998883 3358999999999999999999999652 467788889999999999999999
Q ss_pred HHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048807 351 VFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLEL 430 (757)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 430 (757)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...
T Consensus 83 yl~~ark~--------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 83 YLQMARKK--------ARESYVETELIFALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp ----------------------------------CHHHHTTTTT----------CC----------------CTTTHHHH
T ss_pred HHHHHHHh--------CccchhHHHHHHHHHHhCCHHHHHHHHc----------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88777663 3557788889999999999998887764 35667999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 048807 431 FHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCS 510 (757)
Q Consensus 431 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 510 (757)
|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+.
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----- 204 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----- 204 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----
Confidence 9876 36888999999999999999998888 278899999999999999999966555432
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------C
Q 048807 511 ADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKK--KMLDKAYEVLQEMEDIGMTP------N 582 (757)
Q Consensus 511 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~------~ 582 (757)
..+.-...++..|.+.|++++|..+++...... +.....|+.+.-.|++- +++.+.++.|..- .+++| +
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~ 281 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQ 281 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHT
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHH
Confidence 233445568888899999999999998887664 44567788887777764 3444555554422 12222 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH
Q 048807 583 SVTYNTLISFLSKSGNFSAARRV 605 (757)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~ 605 (757)
...|..++..|.+.++++.|...
T Consensus 282 ~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 282 AHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHH
Confidence 45688888888888999888764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.7e-17 Score=165.49 Aligned_cols=265 Identities=8% Similarity=-0.059 Sum_probs=191.7
Q ss_pred chHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHH
Q 048807 182 HVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVW 261 (757)
Q Consensus 182 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 261 (757)
..+..++..+.+.|++++|+..|+++...+ +.+..+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------------~~~~~~ 57 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA--------------------------------------------PEREEA 57 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------------TTCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------------------------------------------CCCHHH
Confidence 457788889999999999999999887642 224556
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH------
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI------ 335 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l------ 335 (757)
+..++..|.+.|++++|.+.|+++.+..+. +..++..+...|...|++++|.+.|+++.+.. +.+...+..+
T Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 135 (327)
T 3cv0_A 58 WRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVD 135 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHH
Confidence 777888999999999999999999987654 78899999999999999999999999999874 3333444433
Q ss_pred --------HH-HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC
Q 048807 336 --------IN-RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP 406 (757)
Q Consensus 336 --------i~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 406 (757)
.. .+...|++++|.+.++++++.. +.+..++..++..|.+.|++++|.+.++++.. ..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~ 204 (327)
T 3cv0_A 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVE----LRPD 204 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT
T ss_pred HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCC
Confidence 22 3566777788888888877654 44677777777888888888888888877642 2344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----------
Q 048807 407 NAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCA---------- 476 (757)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---------- 476 (757)
+..+|..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|.+.++++.+.....
T Consensus 205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 283 (327)
T 3cv0_A 205 DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASRE 283 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhh
Confidence 56777777777777777777777777777653 2256667777777777777777777777766643221
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 477 -NAVTYTILITAFCNVNNFQEAIKWFDDM 504 (757)
Q Consensus 477 -~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (757)
+..+|..+..++.+.|+.++|..++++.
T Consensus 284 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 284 ATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3556666667777777777777666543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.5e-17 Score=166.41 Aligned_cols=264 Identities=9% Similarity=-0.030 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..++..+.+.|++++|..+|+++.+..+. +..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 345667888999999999999999999987654 88899999999999999999999999999875 4567788999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHhhcCC
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTL--------------ID-GLCKVGKQEEALGLIEQMRLRLQKG 403 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~~~~~~~ 403 (757)
+...|++++|++.++++++.. +.+...+..+ .. .+...|++++|.+.++++.. .
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~ 167 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-------PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE----M 167 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-------TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH----H
T ss_pred HHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh----h
Confidence 999999999999999999864 3333333333 22 25555666666666666531 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 048807 404 CMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTI 483 (757)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 483 (757)
.+.+...+..+...|...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+... .+..++..
T Consensus 168 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~ 245 (327)
T 3cv0_A 168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYN 245 (327)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHH
Confidence 23355666666666666666666666666665542 22445555566666666666666666666555432 24455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHhhHHHHHHHHHhcCChhHHHHHHH
Q 048807 484 LITAFCNVNNFQEAIKWFDDMSRAGCSA-----------DSVVYFTLISGLCQAGRMNDASLVVS 537 (757)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~ 537 (757)
+...|.+.|++++|.+.|+++.+..... +..+|..+...+.+.|++++|..+++
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5555555666666665555555432110 23444444444555555555444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-17 Score=166.10 Aligned_cols=282 Identities=14% Similarity=0.170 Sum_probs=134.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCK 420 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (757)
+.|++++|.+.++++- +..+|..|+.++.+.|++++|++.|.+. +|..+|..++..+..
T Consensus 15 ~~~~ld~A~~fae~~~------------~~~vWs~La~A~l~~g~~~eAIdsfika---------~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC---------CCHHHHHHHHHHHHh
Confidence 6688999999999872 2349999999999999999999999764 477799999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 421 SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKW 500 (757)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 500 (757)
.|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...
T Consensus 74 ~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -------------------------------------CHHHHTTTTT-------CC----------------CTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988777764 4467889999999999999999888774 25777999999999999999999999
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 048807 501 FDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMT 580 (757)
Q Consensus 501 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 580 (757)
|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+.
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----- 204 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----- 204 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----
Confidence 9976 37899999999999999999999988 278999999999999999999966555432
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhhcCCCCC------
Q 048807 581 PNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVN--GHVDEAMKIFKELSSSSNVSP------ 652 (757)
Q Consensus 581 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~p------ 652 (757)
.+..-...++..|.+.|++++|..+++..+... +-....|+-|...|++- +++.+.++.|. +..+++|
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~ 280 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAE 280 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHH
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHH
Confidence 233345578899999999999999999998754 44577788777777764 45555555554 2233433
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 653 NTVIYNILIDSLCKNNQVELALSL 676 (757)
Q Consensus 653 ~~~~~~~li~~~~~~g~~~~A~~~ 676 (757)
+...|..++..|.+.++++.|...
T Consensus 281 ~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 281 QAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHH
Confidence 455688999999999999988874
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.3e-16 Score=156.08 Aligned_cols=274 Identities=13% Similarity=0.106 Sum_probs=165.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHH
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDA 532 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 532 (757)
....|++..|+...+................+..+|...|++++|+..++.. .+|+..++..+...+...|+.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 3345666666666555433211111223344556666666666666555431 244555666666666666677777
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 533 SLVVSKLKEAGFRP-DIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVK 611 (757)
Q Consensus 533 ~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (757)
++.++++...+..| +...+..+..+|.+.|++++|.+.+++ +.+...+..++..|.+.|++++|.+.++++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777666654333 445556666677777777777777665 34666677777777777777777777777776
Q ss_pred CCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 048807 612 EGLVPTVVTY---GALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPN 688 (757)
Q Consensus 612 ~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 688 (757)
.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|...|+++++.. +-+
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 43 432211 12223333457777777777777762 34566677777777777777777777777777642 335
Q ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 689 TNTYNAMFKGLRQKNMLDK-AFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKF 746 (757)
Q Consensus 689 ~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 746 (757)
..++..++.++...|+.++ +.++++++++ +.|+... +.+...+.+.++++..-
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH---HHHHHHHHHHHHHHHHH
Confidence 6677777777777777765 4577777775 3565533 22334445555555443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-15 Score=152.47 Aligned_cols=251 Identities=12% Similarity=0.106 Sum_probs=162.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccccCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAEISVEPD--VIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
.-....|++.+|+..+++.... .|+ ......+.++|...|++++|+..++. ..+|+..++..+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--------~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~l 71 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--------SPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRMF 71 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--------SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccC--------CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHHH
Confidence 3445567788888777765432 232 23455667778888888777765432 235566777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048807 415 INGFCKSGNIEKGLELFHLMKQEGVTP-NVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNN 493 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 493 (757)
...+...|+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|+
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~ 145 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDR 145 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCC
Confidence 777777777888888888777665434 455566666777777888888777766 3466677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 494 FQEAIKWFDDMSRAGCSADSVVY---FTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEV 570 (757)
Q Consensus 494 ~~~A~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 570 (757)
+++|.+.|+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...
T Consensus 146 ~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 146 LDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777663 332111 112233334466777777777766652 34566666777777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhC
Q 048807 571 LQEMEDIGMTPNSVTYNTLISFLSKSGNFSA-ARRVLKKMVKE 612 (757)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 612 (757)
|+++++.. +.+..++..++..+...|+.++ +.++++++++.
T Consensus 223 l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 223 LQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 77766654 4456666666666666666654 45666666654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=182.99 Aligned_cols=118 Identities=10% Similarity=0.164 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHH
Q 048807 583 SVTYNTLISFLSKSGNFSAARRVLKKMVK---EGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNI 659 (757)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 659 (757)
..||++||++|++.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+ .|+.||.+||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHHH
Confidence 34666666666666666666666655543 35566666666666666666666666666666666 566666666666
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 660 LIDSLCKNNQ-VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQ 701 (757)
Q Consensus 660 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 701 (757)
+|+++++.|+ .++|.++|++|.+.|+.||..+|++++.+..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 6666666665 35566666666666666666666666554444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-15 Score=161.41 Aligned_cols=347 Identities=10% Similarity=0.010 Sum_probs=180.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDF---KRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
+...+.+.|++++|++.|++..+.| ++.++..+...|...|+. ++|.+.|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5667778888888888888887765 445566677777777777 8888888888754 45566666665555
Q ss_pred cC-----ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 048807 342 LY-----RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN 416 (757)
Q Consensus 342 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (757)
.| +.++|+..|++..+.+ +..++..|...|...+..+++.+.++.+...... .+...+..+..
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---------~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~---g~~~a~~~Lg~ 149 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---------EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA---GYPEAGLAQVL 149 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---------CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH---TCTTHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC---CCHHHHHHHHH
Confidence 44 6778888888888765 2336777777777666544433333333211122 23456666677
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--
Q 048807 417 GFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHG---RINSAVEFFQEVTRKGLCANAVTYTILITAFCNV-- 491 (757)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 491 (757)
.|...+.++++.+....+.+.-...+...+..|...|...| +.++|++.|++..+.|.. +...+..|...|...
T Consensus 150 ~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 150 LYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATL 228 (452)
T ss_dssp HHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGG
T ss_pred HHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCC
Confidence 77776644433333222221111113336666777777777 677777777777776643 444445555555443
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH-H--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 048807 492 --NNFQEAIKWFDDMSRAGCSADSVVYFTLISG-L--CQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKK---- 562 (757)
Q Consensus 492 --g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---- 562 (757)
+++++|+..|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..+...|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp SSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence 56777777777665 33 44555555554 2 34566666666666666554 4455555555555 33
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 048807 563 -MLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK----SGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCV----NGH 633 (757)
Q Consensus 563 -~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~ 633 (757)
++++|...|++.. .| +...+..|...|.. ..++++|...|++..+.|. ......|...|.. ..+
T Consensus 301 ~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp CCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCC
T ss_pred CCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCC
Confidence 5666666666555 32 44455555555444 2255555555555555432 2223333333432 234
Q ss_pred HHHHHHHHHHhhh
Q 048807 634 VDEAMKIFKELSS 646 (757)
Q Consensus 634 ~~~A~~~~~~~~~ 646 (757)
.++|..+|+...+
T Consensus 374 ~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 374 PLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.4e-17 Score=179.85 Aligned_cols=156 Identities=14% Similarity=0.180 Sum_probs=128.6
Q ss_pred cCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048807 367 EPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTL 446 (757)
Q Consensus 367 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 446 (757)
..-..+||+||++||+.|++++|.++|++|..+...|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 44567999999999999999999999999875445689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HhhHHHH
Q 048807 447 NTLVDGMCRHGRI-NSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSAD------SVVYFTL 519 (757)
Q Consensus 447 ~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~l 519 (757)
+++|+++|+.|+. ++|.++|++|.+.|+.||..+|+.++..+.+. ..++..+++ ..++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999985 78999999999999999999999998766554 333344443 2233333 3344445
Q ss_pred HHHHHhcC
Q 048807 520 ISGLCQAG 527 (757)
Q Consensus 520 i~~~~~~g 527 (757)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 55555444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-15 Score=158.66 Aligned_cols=378 Identities=10% Similarity=0.037 Sum_probs=244.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 187 LIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLI 266 (757)
Q Consensus 187 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li 266 (757)
+...+.+.|++++|++.|++..+.+ .++ .+..|.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~-------------------------------------------A~~~Lg 42 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSE-------------------------------------------AQVGLA 42 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCT-------------------------------------------GGGTCC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHH-------------------------------------------HHHHHH
Confidence 5667778888889988888876532 111 222234
Q ss_pred HHHHHcCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 267 TRFCRKGKT---DEAWDVLHVLMKFDAPLEAASCNALLNALGREG-----DFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 267 ~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
..|...|+. ++|++.|++..+. ++..+..+...+...| ++++|.+.|++..+.| +...+..|...
T Consensus 43 ~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~ 115 (452)
T 3e4b_A 43 DIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAML 115 (452)
T ss_dssp --------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHH
T ss_pred HHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 445556666 8888888888864 5566777777555555 7788999999998876 34477778888
Q ss_pred HHhcCChhH---HHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 048807 339 LCKLYRADE---ALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLI 415 (757)
Q Consensus 339 ~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 415 (757)
|...+..++ +.+.+.+....+ +...+..|...|...+.++++......+......+ +...+..|.
T Consensus 116 y~~~~~~~~~~~a~~~~~~a~~~g---------~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~---~~~a~~~Lg 183 (452)
T 3e4b_A 116 YLQYPHSFPNVNAQQQISQWQAAG---------YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT---TDICYVELA 183 (452)
T ss_dssp HHHCGGGCTTCCHHHHHHHHHHHT---------CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT---CTTHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC---CHHHHHHHH
Confidence 877665443 455555554433 56677888888888886555554433332111222 333888888
Q ss_pred HHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 048807 416 NGFCKSG---NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRH----GRINSAVEFFQEVTRKGLCANAVTYTILITA- 487 (757)
Q Consensus 416 ~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~- 487 (757)
..|.+.| +.++|++.|++..+.|.. +...+..+...|... +++++|..+|++.. . -+...+..|...
T Consensus 184 ~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~ 258 (452)
T 3e4b_A 184 TVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLL 258 (452)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHH
T ss_pred HHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHH
Confidence 8999999 899999999999988743 555556777777554 68899999999988 3 356677777776
Q ss_pred H--HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 488 F--CNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAG-----RMNDASLVVSKLKEAGFRPDIVCYNHLISGFCK 560 (757)
Q Consensus 488 ~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 560 (757)
| ...+++++|+..|++..+.| +...+..|...|. .| ++++|...|++.. . -+...+..+...|..
T Consensus 259 ~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 259 YDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRR 330 (452)
T ss_dssp HHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHT
T ss_pred HhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHC
Confidence 4 46889999999999998876 7778888888877 55 8999999998877 3 367778888888876
Q ss_pred ----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048807 561 ----KKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK----SGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNG 632 (757)
Q Consensus 561 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 632 (757)
..++++|...|++..+.| +......|...|.. ..+.++|...|+...+.|.. +.......+......+
T Consensus 331 G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~ 406 (452)
T 3e4b_A 331 GYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPA 406 (452)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHH
T ss_pred CCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHH
Confidence 448999999999999877 33455667777764 45899999999999887632 2222222222222233
Q ss_pred CHHHHHHHHHHhhh
Q 048807 633 HVDEAMKIFKELSS 646 (757)
Q Consensus 633 ~~~~A~~~~~~~~~ 646 (757)
+..+|..+.++..+
T Consensus 407 ~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 407 QRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55566666655444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-14 Score=139.55 Aligned_cols=225 Identities=13% Similarity=0.073 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CC----HHHHH
Q 048807 479 VTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFR--PD----IVCYN 552 (757)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~----~~~~~ 552 (757)
..+..+...+...|++++|+..|+++.+.. .+..++..+...+...|++++|...+++..+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555666666666666666655554 45555566666666666666666666655543211 11 45677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048807 553 HLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNG 632 (757)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 632 (757)
.+...|...|++++|...|+++.+. .|+. ..+.+.|++++|...++++.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 7777777777777777777777765 3442 34556677888888888887753 224566777788888888
Q ss_pred CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048807 633 HVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLM 712 (757)
Q Consensus 633 ~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 712 (757)
++++|...++++.+. .+.+..+|..++..|.+.|++++|...|+++.+.. +.+...|..++.++.+.|++++|.+.+
T Consensus 154 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888888888772 23456778888888888888888888888888752 345778888888888888888888888
Q ss_pred HHHHHc
Q 048807 713 DRMIEH 718 (757)
Q Consensus 713 ~~~~~~ 718 (757)
+++++.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-14 Score=139.22 Aligned_cols=200 Identities=10% Similarity=0.017 Sum_probs=150.9
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
|++...+..+...+.+.|++++|+..|+++++.++. +...|..+...+.+.|++++|...|++.++.+ +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 566778889999999999999999999999998765 89999999999999999999999999999875 4466788888
Q ss_pred HHHHHhc-----------CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC
Q 048807 336 INRLCKL-----------YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGC 404 (757)
Q Consensus 336 i~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 404 (757)
...+.+. |++++|+..++++++.+ |.+..+|..+...|...|++++|+..|++... ..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~- 148 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-------PRYAPLHLQRGLVYALLGERDKAEASLKQALA---LE- 148 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC-
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cc-
Confidence 8999888 88888888888888764 45677788888888888888888888888752 22
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 048807 405 MPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVT 470 (757)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 470 (757)
.+...+..+...|...|++++|+..|++..+... .+...+..+...+.+.|++++|...+++..
T Consensus 149 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 149 -DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred -cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 5677778888888888888888888888777532 256677777777777777777777776543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-14 Score=140.46 Aligned_cols=245 Identities=7% Similarity=-0.019 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccch----HHHH
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVT----FGTI 335 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~l 335 (757)
..+......+.+.|++++|+..|+++.+..+. +..+|..+...|.+.|++++|.+.|+++.+.+ ++... |..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHH
Confidence 34556778888999999999999999988654 66688888899999999999999999998843 33333 7888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLI 415 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 415 (757)
...+...|++++|++.|+++++.. +.+..+|..+...|...|++++|.+.+++. ....+.+...|..+.
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a----l~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ----IRPTTTDPKVFYELG 149 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGG----CCSSCCCHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHH----hhcCCCcHHHHHHHH
Confidence 889999999999999999998864 556788999999999999999999999887 344566777888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHH
Q 048807 416 NGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGR---INSAVEFFQEVTRKG-LCAN------AVTYTILI 485 (757)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~li 485 (757)
..+...+++++|.+.|+++.+.. +.+...+..+...+...|+ +++|...++++.+.. ..|+ ..+|..+.
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 44445569999999999988863 2246777778888888887 778888888877642 1122 24677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048807 486 TAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLI 520 (757)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 520 (757)
..|...|++++|...|+++.+.. +.+...+..+.
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~ 262 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILALD-PTNKKAIDGLK 262 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhh
Confidence 88888888888888888887764 34444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-14 Score=141.30 Aligned_cols=225 Identities=14% Similarity=0.100 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCc----cchHH
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDI--EPS----VVTFG 333 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~ 333 (757)
..+..+...+.+.|++++|++.|+++.+.+ .+..+|..+...|...|++++|.+.|+++.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456677788888888888888888888776 5777888888888888888888888888776421 011 35677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 048807 334 TIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNC 413 (757)
Q Consensus 334 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 413 (757)
.+...+...|++++|+..|+++++.. |+. ..+.+.|++++|...++++. ...+.+...|..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~-------~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~ 144 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--------RTA-------DILTKLRNAEKELKKAEAEA----YVNPEKAEEARL 144 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--------CCH-------HHHHHHHHHHHHHHHHHHHH----HCCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--------chh-------HHHHHHhHHHHHHHHHHHHH----HcCcchHHHHHH
Confidence 77777778888888888888777642 332 34556677777777777763 222344566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048807 414 LINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNN 493 (757)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 493 (757)
+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...++++++.... +..+|..+...|.+.|+
T Consensus 145 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 145 EGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhh
Confidence 77777777777777777777776532 25666677777777777777777777777665432 45666666677777777
Q ss_pred HHHHHHHHHHHHHc
Q 048807 494 FQEAIKWFDDMSRA 507 (757)
Q Consensus 494 ~~~A~~~~~~m~~~ 507 (757)
+++|...|++..+.
T Consensus 223 ~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 223 YASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777666553
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-14 Score=137.82 Aligned_cols=200 Identities=13% Similarity=0.005 Sum_probs=145.1
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCH
Q 048807 291 PLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDV 370 (757)
Q Consensus 291 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 370 (757)
+++...+..+...+.+.|++++|...|++.++.+ +.+...+..+...+.+.|++++|+..++++++.+ |.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-------PRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcH
Confidence 3577889999999999999999999999999875 5567889999999999999999999999999875 6678
Q ss_pred hHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 048807 371 IIFNTLIDGLCKV-----------GKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGV 439 (757)
Q Consensus 371 ~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 439 (757)
.++..+...+.+. |++++|+..+++... ..+.+...|..+...+...|++++|++.|++..+..
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 148 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER----VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE- 148 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-
Confidence 8999999999888 777777777777642 234456677777777777777777777777777765
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 440 TPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMS 505 (757)
Q Consensus 440 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (757)
.+...+..+...+...|++++|...|+++++..+. +...+..+...+.+.|++++|+..|++..
T Consensus 149 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 149 -DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred -cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 46667777777777777777777777777765432 56666667777777777777777666543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-11 Score=137.69 Aligned_cols=431 Identities=10% Similarity=0.035 Sum_probs=267.6
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC---hhHHHHH
Q 048807 275 TDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR---ADEALEV 351 (757)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~ 351 (757)
..+.+..|++.+..++. |..+|..++..+.+.++++.+..+|++++.. ++.....|...+..-.+.|. .+.+..+
T Consensus 48 ~~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 34445556666666654 7888888888888888888888888888876 34456667777777777777 8888888
Q ss_pred HHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCH--------HHHHHHHHHHHHhhcCCC-C-CCHHHHHHHHHHHH--
Q 048807 352 FEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQ--------EEALGLIEQMRLRLQKGC-M-PNAVTYNCLINGFC-- 419 (757)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~~~~~~~-~-~~~~~~~~li~~~~-- 419 (757)
|++.+.... .+|++..|...+....+.++. +...++|+.... .-|. . .....|...+....
T Consensus 126 feRal~~~~-----~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~--~vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 126 LARCLSKEL-----GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVD--KCAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp HHHHTCSSS-----CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHH--HTTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHhcC-----CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HhCcccccchHHHHHHHHHHHhc
Confidence 888876520 137788888877766665543 233466666542 2233 2 34567777776543
Q ss_pred -------HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------------cCChHHHHHHHHHHHH--CCCC--
Q 048807 420 -------KSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR-------------HGRINSAVEFFQEVTR--KGLC-- 475 (757)
Q Consensus 420 -------~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------------~g~~~~A~~~~~~~~~--~~~~-- 475 (757)
.+++++.+..+|+.++......-..+|......-.. ..+++.|...+.++.. .++.
T Consensus 199 ~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 199 KPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred cccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 344577888888888853221112233222111111 1123334444444321 1110
Q ss_pred -------------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 048807 476 -------------A-----N---AVTYTILITAFCNVN-------NFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAG 527 (757)
Q Consensus 476 -------------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 527 (757)
| + ...|...+..--..+ ..+.+..+|++++.. ++.....|...+..+...|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcC
Confidence 0 0 134555444332222 123455677777765 3557777888888778888
Q ss_pred ChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCC------------HHH
Q 048807 528 RMNDAS-LVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGM---------TPN------------SVT 585 (757)
Q Consensus 528 ~~~~A~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~~~------------~~~ 585 (757)
+.++|. .+|++.... .+.+...|...+....+.|+++.|.++|+++.+... .|+ ...
T Consensus 358 ~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp CCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 888886 888887765 334566677777888888888888888888775310 121 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 048807 586 YNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVN-GHVDEAMKIFKELSSSSNVSPNTVIYNILIDSL 664 (757)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~ 664 (757)
|...+....+.|..+.|..+|.++++.........|...+..-.+. ++.+.|.++|+...+. .+.+...|...++..
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 6677777777788888888888887751111233343333333333 4478888888888773 334566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 665 CKNNQVELALSLMEEMKVKEVRP--NTNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
...|+.+.|..+|++.+.....+ ....|..++..-.+.|+.+.+.++.+++.+.
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77888888888888887753211 2356777777777888888888888888775
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=6.8e-14 Score=145.53 Aligned_cols=250 Identities=9% Similarity=0.057 Sum_probs=203.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCccchHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGD-FKRMNQLFTEMKENDIEPSVVTFGTII 336 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li 336 (757)
+..+|..+...+.+.|++++|++.|+++++.++. +..+|+.+..++.+.|+ +++|+..|+++++.+ +.+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 4557788888999999999999999999998765 88999999999999996 999999999999975 44678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN 416 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (757)
..+...|++++|+..|+++++.+ +.+..+|..+..++.+.|++++|+..++++. ...+.+...|+.+..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al----~l~P~~~~a~~~lg~ 242 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLL----KEDVRNNSVWNQRYF 242 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH----HHCTTCHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHH----HhCCCCHHHHHHHHH
Confidence 99999999999999999999876 6788999999999999999999999999985 234667889999999
Q ss_pred HHHH-cCCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 048807 417 GFCK-SGNIEKG-----LELFHLMKQEGVTPNVVTLNTLVDGMCRHG--RINSAVEFFQEVTRKGLCANAVTYTILITAF 488 (757)
Q Consensus 417 ~~~~-~g~~~~A-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 488 (757)
++.+ .|..++| ++.+++.++.... +...|..+...+...| ++++|.+.+.++ +. .+.+...+..++.+|
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHH
Confidence 9999 6665777 5888888876433 6778888888888877 688898888887 33 334677888888888
Q ss_pred HhcC---------CHHHHHHHHHHH-HHcCCCCCHhhHHHHHHHHH
Q 048807 489 CNVN---------NFQEAIKWFDDM-SRAGCSADSVVYFTLISGLC 524 (757)
Q Consensus 489 ~~~g---------~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~ 524 (757)
.+.| ..++|+++|+++ .+.+ +.....|..+...+.
T Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 8864 258899999888 5542 334455655555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-13 Score=143.50 Aligned_cols=248 Identities=13% Similarity=0.078 Sum_probs=204.6
Q ss_pred chHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHH
Q 048807 182 HVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVW 261 (757)
Q Consensus 182 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 261 (757)
.+|+.+..++.+.|++++|++.|++++..+ +.+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--------------------------------------------P~~~~a 133 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--------------------------------------------AANYTV 133 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--------------------------------------------TTCHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--------------------------------------------ccCHHH
Confidence 457778889999999999999999988743 335567
Q ss_pred HHHHHHHHHHcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 262 LTQLITRFCRKGK-TDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 262 ~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
|+.+..+|.+.|+ +++|+..|+++++.++. +..+|+.+..++.+.|++++|+..|+++++.+ +.+...|..+..++.
T Consensus 134 ~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~ 211 (382)
T 2h6f_A 134 WHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQ 211 (382)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHH
Confidence 8888889999997 99999999999998766 89999999999999999999999999999976 557888999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCK-VGKQEEA-----LGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
+.|++++|+..++++++.+ +.+..+|+.+...|.+ .|..++| ++.+++.. .-.+.+...|+.+
T Consensus 212 ~~g~~~eAl~~~~~al~l~-------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al----~l~P~~~~a~~~l 280 (382)
T 2h6f_A 212 EFKLWDNELQYVDQLLKED-------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI----KLVPHNESAWNYL 280 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH----HHSTTCHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH----HHCCCCHHHHHHH
Confidence 9999999999999999976 6688999999999999 6665777 47777774 2245678899999
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---------ChHHHHHHHHHH-HHCCCCCCHHHHH
Q 048807 415 INGFCKSG--NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHG---------RINSAVEFFQEV-TRKGLCANAVTYT 482 (757)
Q Consensus 415 i~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~~-~~~~~~~~~~~~~ 482 (757)
...+.+.| ++++|++.+.++ +. .+.+...+..++..|.+.| .+++|+++++++ .+... .....|.
T Consensus 281 ~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~ 357 (382)
T 2h6f_A 281 KGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT-IRKEYWR 357 (382)
T ss_dssp HHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHH
T ss_pred HHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 99999988 689999999888 43 3446788899999998874 358999999998 66532 2455666
Q ss_pred HHHHHHH
Q 048807 483 ILITAFC 489 (757)
Q Consensus 483 ~li~~~~ 489 (757)
.+...+.
T Consensus 358 ~~~~~l~ 364 (382)
T 2h6f_A 358 YIGRSLQ 364 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-11 Score=135.43 Aligned_cols=426 Identities=10% Similarity=0.059 Sum_probs=301.8
Q ss_pred hhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCC---H
Q 048807 310 FKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK---Q 386 (757)
Q Consensus 310 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~ 386 (757)
..+-...|++.+..+ +-|..+|..++..+.+.+.++.+..+|++++.. +|.....|...+..-.+.|. +
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-------fP~~~~lW~~Yi~~E~~~~~~~~~ 119 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-------FPLMANIWCMRLSLEFDKMEELDA 119 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHTC--CCCH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHhhCCcchH
Confidence 344555666666665 568999999999999999999999999999987 57788899999999999999 9
Q ss_pred HHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHH
Q 048807 387 EEALGLIEQMRLRLQKGC--MPNAVTYNCLINGFCKSGNI--------EKGLELFHLMKQ-EGV-TPN-VVTLNTLVDGM 453 (757)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~li~~~ 453 (757)
+.+.++|++. .... +|++..|...+....+.++. +...++|+..+. .|. .++ ...|...+...
T Consensus 120 ~~v~~lfeRa----l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~ 195 (679)
T 4e6h_A 120 AVIEPVLARC----LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFL 195 (679)
T ss_dssp HHHHHHHHHH----TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 9999999998 4444 38999999988876665543 344577877665 365 454 46777777654
Q ss_pred H---------HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHc--CC
Q 048807 454 C---------RHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCN-------------VNNFQEAIKWFDDMSRA--GC 509 (757)
Q Consensus 454 ~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~--~~ 509 (757)
. ..++++.+..+|.+++......-..+|......--. ..+++.|...+.++... ++
T Consensus 196 ~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l 275 (679)
T 4e6h_A 196 EHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGL 275 (679)
T ss_dssp HTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhH
Confidence 3 244578899999999864322223344322211111 12344455555543221 11
Q ss_pred ----CC----------------C---HhhHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048807 510 ----SA----------------D---SVVYFTLISGLCQAG-------RMNDASLVVSKLKEAGFRPDIVCYNHLISGFC 559 (757)
Q Consensus 510 ----~~----------------~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 559 (757)
+. + ...|...+.---..+ ..+.+..+|++++... +-+...|...+..+.
T Consensus 276 ~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~ 354 (679)
T 4e6h_A 276 KRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQG 354 (679)
T ss_dssp CCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHH
T ss_pred hhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 11 0 134555554333322 1234567788887763 447888999999888
Q ss_pred hcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---------CCC------------
Q 048807 560 KKKMLDKAY-EVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGL---------VPT------------ 617 (757)
Q Consensus 560 ~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------~p~------------ 617 (757)
..|+.++|. ++|++.... +|.+...|...+....+.|++++|.++|+++++... .|+
T Consensus 355 ~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 999999997 999999875 366777788889999999999999999999986310 132
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 618 VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNN-QVELALSLMEEMKVKEVRPNTNTYNAMF 696 (757)
Q Consensus 618 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 696 (757)
..+|...+....+.|..+.|..+|.++.+..+. .....|...+..-.+.+ +.+.|.++|+..++. ++.+...|...+
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~ 511 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYL 511 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHH
Confidence 236777788778889999999999999872011 22334444444444544 599999999999986 445677788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHhhch
Q 048807 697 KGLRQKNMLDKAFKLMDRMIEHACHP--DYISMEILTEWLSEAGQTEKLKKFVQGYA 751 (757)
Q Consensus 697 ~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (757)
+.....|+.+.|..+|++++.....+ ....|...+..-...|+.+.+.++.+++.
T Consensus 512 ~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 512 DFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp HHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 98889999999999999998753222 23788899999999999999999988864
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-12 Score=127.76 Aligned_cols=224 Identities=11% Similarity=0.023 Sum_probs=155.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 048807 477 NAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQ----AGRMNDASLVVSKLKEAGFRPDIVCYN 552 (757)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~ 552 (757)
+..++..+...|...|++++|+..|++..+. .+..++..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455555666666666666666666666653 245566666666666 667777777776666654 566666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048807 553 HLISGFCK----KKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK----SGNFSAARRVLKKMVKEGLVPTVVTYGAL 624 (757)
Q Consensus 553 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 624 (757)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 67777776 777777777777777654 56667777777777 777777777777777754 45566667
Q ss_pred HHHHHh----cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 625 IHAFCV----NGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCK----NNQVELALSLMEEMKVKEVRPNTNTYNAMF 696 (757)
Q Consensus 625 i~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 696 (757)
...|.. .+++++|+..|++..+ . .+...+..+...|.+ .+++++|+..|++..+.+ +...+..+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 777776 7778888888777776 2 245667777777777 788888888888877753 356667777
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHcC
Q 048807 697 KGLRQ----KNMLDKAFKLMDRMIEHA 719 (757)
Q Consensus 697 ~~~~~----~g~~~~A~~~~~~~~~~g 719 (757)
.+|.+ .|++++|.+++++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777 778888888888887653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-13 Score=133.33 Aligned_cols=246 Identities=14% Similarity=0.075 Sum_probs=139.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHH
Q 048807 331 TFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVT 410 (757)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 410 (757)
.+......+...|++++|+..|+++++.. +.+..++..+...|...|++++|.+.+++.... .........+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~ 76 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSAD 76 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHH
Confidence 34455566666677777777777666653 334456666666666777777777776666410 0001111233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 411 YNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCN 490 (757)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 490 (757)
|..+...+...|++++|++.|++..+... .+..++..+...|...|++++|...++++.+... .+..++..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHH
Confidence 66666666666777777766666666432 2445666666666666666666666666665522 245555555522333
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHh
Q 048807 491 VNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGR---MNDASLVVSKLKEAG-FRPD------IVCYNHLISGFCK 560 (757)
Q Consensus 491 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g-~~~~------~~~~~~li~~~~~ 560 (757)
.+++++|.+.|+++.+.. +.+...+..+...+...|+ +++|...+++..+.. -.|+ ..+|..+...|.+
T Consensus 155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 346677777766666553 3345555556666666665 555666665554431 0111 1345556666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048807 561 KKMLDKAYEVLQEMEDIGMTPNSVTYNT 588 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 588 (757)
.|++++|.+.|+++.+.. |.+...+..
T Consensus 234 ~~~~~~A~~~~~~al~~~-p~~~~a~~~ 260 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALD-PTNKKAIDG 260 (272)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-ccHHHHHHH
Confidence 666666666666666553 334444333
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.3e-13 Score=131.41 Aligned_cols=202 Identities=15% Similarity=0.065 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..++..|...|++++|.+.|+++.+..+. +..++..+...|.+.|++++|.+.|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 445666667777777777777777777665433 56666667777777777777777777766653 2345556666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGF 418 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (757)
+...|++++|++.++++++.+. .+.+...+..++..|.+.|++++|.+.++++.. ..+.+...+..++..+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~ 185 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTL-----YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR----LNRNQPSVALEMADLL 185 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTT-----CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCcc-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCcccHHHHHHHHHHH
Confidence 6666666777666666655110 133455566666666666666666666666531 1233455666666666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 419 CKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 186 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 186 YKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666666666665542 224455555555666666666666666665554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-12 Score=129.36 Aligned_cols=202 Identities=13% Similarity=0.035 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
...|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++++.. +.+..++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~ 108 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------SRNARVL 108 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCcHHHH
Confidence 5678888889999999999999999998864 4467778888889999999999999999988864 5577888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQMRLRLQK-GCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDG 452 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (757)
..+...|...|++++|.+.++++. .. ..+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 184 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEAS---QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADL 184 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT---TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH---hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHH
Confidence 889999999999999999999884 21 233456778888888889999999999998888764 2357778888888
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAG 508 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 508 (757)
+...|++++|...++++.+... .+...+..+...+...|+.++|.+.++++.+..
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 8888888888888888877543 366777778888888888888888888887763
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=5e-12 Score=126.12 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 410 TYNCLINGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (757)
++..+...|...|++++|++.|++..+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~ 34 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD 34 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 333344444444444444444444433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-13 Score=128.38 Aligned_cols=204 Identities=13% Similarity=0.003 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+..++..++..|...|++++|.+.|+++.+..+. +..+|..+...|...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 4556667777777777777777777777766543 56677777777777777777777777776653 334556666666
Q ss_pred HHHhc-CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 048807 338 RLCKL-YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN 416 (757)
Q Consensus 338 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (757)
.+... |++++|...++++++... .+.+...+..++..+...|++++|.+.++++.. ..+.+...+..++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~ 155 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPT-----YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA----AQPQFPPAFKELAR 155 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTT-----CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCchHHHHHHH
Confidence 77777 777777777777765210 133355666666777777777777777766632 12334566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 417 GFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
.+.+.|++++|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666666666666666665432134555555555556666666666666665543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-13 Score=135.58 Aligned_cols=211 Identities=13% Similarity=0.077 Sum_probs=146.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTII 336 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 336 (757)
.....+..+...+.+.|++++|...|+++.+..+. +..++..+...|.+.|++++|.+.|+++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 45567778888888999999999999999887654 78888888889999999999999999888764 34567778888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN 416 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (757)
..+...|++++|.+.++++++.. +.+...+..++..+.+.|++++|.+.++++.. ..+.+...+..+..
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~ 167 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE----LNENDTEARFQFGM 167 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----HCTTCHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCccHHHHHHHHH
Confidence 88888889999999888888764 55677888888888888888888888888742 23456777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 048807 417 GFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYT 482 (757)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 482 (757)
.+.+.|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+.... +..++.
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~ 231 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALH 231 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHH
Confidence 8888888888888888877763 235667777777888888888888888877775433 444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.9e-14 Score=138.93 Aligned_cols=221 Identities=10% Similarity=-0.051 Sum_probs=121.0
Q ss_pred cCChhHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHH
Q 048807 272 KGKTDEAWDVLHVLMKFDAP---LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEA 348 (757)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 348 (757)
.|++++|++.|+++.+.... .+..+|..++..+...|++++|.+.|+++.+.+ +.+..+|..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 35666666666666654321 134556666666666666666666666666653 33455566666666666666666
Q ss_pred HHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 048807 349 LEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGL 428 (757)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 428 (757)
++.|+++++.. +.+..++..++..|.+.|++++|.+.++++... .|+.......+..+...|++++|.
T Consensus 97 ~~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~A~ 164 (275)
T 1xnf_A 97 YEAFDSVLELD-------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDPFRSLWLYLAEQKLDEKQAK 164 (275)
T ss_dssp HHHHHHHHHHC-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcC-------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHhcCHHHHH
Confidence 66666666543 334556666666666666666666666665421 222222333333444556666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 429 ELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCA---NAVTYTILITAFCNVNNFQEAIKWFDDMS 505 (757)
Q Consensus 429 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (757)
..+.+..... +++...+ .++..+...++.++|...+.++.+..... +..++..+...|.+.|++++|...|+++.
T Consensus 165 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 165 EVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6665555442 2222222 24445555555566666665554432110 13455555556666666666666666655
Q ss_pred Hc
Q 048807 506 RA 507 (757)
Q Consensus 506 ~~ 507 (757)
+.
T Consensus 243 ~~ 244 (275)
T 1xnf_A 243 AN 244 (275)
T ss_dssp TT
T ss_pred hC
Confidence 54
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-13 Score=133.94 Aligned_cols=201 Identities=13% Similarity=0.147 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVII 372 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
....|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.++++++.. +.+..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~ 93 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-------SSAATA 93 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CcchHH
Confidence 45667777777778888888888888887754 3456667777777778888888888888877654 456677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDG 452 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 452 (757)
+..+...|...|++++|.+.++++.. ..+.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALR----AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 77777778888888888888777642 224456677777777777777777777777777653 2256666777777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRA 507 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (757)
+.+.|++++|...++++.+... .+..++..+...|.+.|++++|...++++.+.
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777777777777666533 25566666677777777777777777766665
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.7e-13 Score=126.75 Aligned_cols=203 Identities=12% Similarity=0.046 Sum_probs=138.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVII 372 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
+...|..++..+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++++.. +.+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~ 78 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------PDSAEI 78 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCChHH
Confidence 45677777777788888888888888777754 3345667777777777788888888887777653 446667
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 373 FNTLIDGLCKV-GKQEEALGLIEQMRLRLQK-GCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLV 450 (757)
Q Consensus 373 ~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 450 (757)
+..++..|... |++++|...++++. .. ..+.+...+..+...+...|++++|++.++++.+... .+...+..+.
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 154 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKAL---ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELA 154 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHH---TSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHH---cCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHH
Confidence 77777777777 77777777777774 21 1222356677777777777777777777777766532 2456666677
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048807 451 DGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRA 507 (757)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (757)
..+...|++++|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777777777777666543135555666666666677777777666666544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=137.73 Aligned_cols=153 Identities=10% Similarity=0.002 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAF 628 (757)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 628 (757)
..+..+...|...|++++|...|+++.+.. |+.......+..+...|++++|...+++..... +++...+ .++..+
T Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~ 187 (275)
T 1xnf_A 112 YAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFY 187 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHH
Confidence 344444444444444444444444444432 121122222222333445555555554444321 1122222 233344
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 048807 629 CVNGHVDEAMKIFKELSSSSNVSPN-----TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN 703 (757)
Q Consensus 629 ~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 703 (757)
...++.++|...+++..+ ..|+ ...+..++..|.+.|++++|...|+++... .|+. +.....++...|
T Consensus 188 ~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~ 260 (275)
T 1xnf_A 188 LGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELS 260 (275)
T ss_dssp TTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHH
Confidence 444445555555544433 1111 244555566666666666666666666553 2321 122233445555
Q ss_pred CHHHHHHHH
Q 048807 704 MLDKAFKLM 712 (757)
Q Consensus 704 ~~~~A~~~~ 712 (757)
++++|++.+
T Consensus 261 ~~~~a~~~~ 269 (275)
T 1xnf_A 261 LLGQDQDDL 269 (275)
T ss_dssp HHHHC----
T ss_pred HHHhhHHHH
Confidence 566655544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.8e-13 Score=142.00 Aligned_cols=303 Identities=15% Similarity=0.116 Sum_probs=164.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-
Q 048807 406 PNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN----VVTLNTLVDGMCRHGRINSAVEFFQEVTRK----GLCA- 476 (757)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~- 476 (757)
.....+......+...|++++|...|+++.+.+.. + ..++..+...+...|++++|...++++.+. +..+
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44555666677777777777777777777765322 2 245666666777777777777777665442 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048807 477 NAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCS-ADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLI 555 (757)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 555 (757)
...++..+...|...|++++|...+++..+.... .+.. ....++..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~ 134 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc-------------------------------chHHHHHHHH
Confidence 1334555566666666666666666665543100 0100 0022344444
Q ss_pred HHHHhcCC--------------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 556 SGFCKKKM--------------------LDKAYEVLQEMEDI----GM-TPNSVTYNTLISFLSKSGNFSAARRVLKKMV 610 (757)
Q Consensus 556 ~~~~~~g~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (757)
..|...|+ +++|...+++..+. +. +....++..+...|...|++++|...+++.+
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444444 55555555443321 10 1112345556666666666666666666655
Q ss_pred hCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 611 KEGL-VPT----VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN----TVIYNILIDSLCKNNQVELALSLMEEMK 681 (757)
Q Consensus 611 ~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 681 (757)
+... .++ ..++..+...|...|++++|...+++..+...-.++ ..++..++..|.+.|++++|...+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3210 011 235566666677777777777777665431110111 3456667777777777777777777765
Q ss_pred hCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCH
Q 048807 682 VKEV-RPN----TNTYNAMFKGLRQKNMLDKAFKLMDRMIEH----ACHPD-YISMEILTEWLSEAGQT 740 (757)
Q Consensus 682 ~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~ 740 (757)
+... .++ ..++..+..++...|++++|.+++++.++. +..+. ..++..+...+...|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 4200 111 345666777777777777777777776542 11111 24555666666665543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.9e-13 Score=141.70 Aligned_cols=275 Identities=15% Similarity=0.136 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCH
Q 048807 443 VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANA----VTYTILITAFCNVNNFQEAIKWFDDMSRA----G-CSADS 513 (757)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~ 513 (757)
...+..+...+...|++++|...|+++++.... +. .++..+...|...|++++|...+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345556777888889999999999988887433 33 46778888888899999999988887653 1 12234
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 048807 514 VVYFTLISGLCQAGRMNDASLVVSKLKEA----GF-RPDIVCYNHLISGFCKKKM-----------------LDKAYEVL 571 (757)
Q Consensus 514 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 571 (757)
.++..+...|...|++++|...+++..+. +. .....++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 56777788888888888888888876653 11 1123467777778888888 78888877
Q ss_pred HHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 572 QEMEDI----GM-TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLV-PT----VVTYGALIHAFCVNGHVDEAMKIF 641 (757)
Q Consensus 572 ~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~ 641 (757)
++..+. +. +....++..+...|...|++++|...+++.++.... ++ ...+..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 776542 11 112246667777778888888888888777653110 11 225667777777788888888888
Q ss_pred HHhhhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 048807 642 KELSSSSNVSPN----TVIYNILIDSLCKNNQVELALSLMEEMKVK----EVRP-NTNTYNAMFKGLRQKNMLDKAFKLM 712 (757)
Q Consensus 642 ~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 712 (757)
++..+...-..+ ..++..+...|...|++++|...+++.... +..+ ...++..+..+|.+.|++++|.+++
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 777662211111 345667777777788888888887777642 1000 1235666777777778888888888
Q ss_pred HHHHHc
Q 048807 713 DRMIEH 718 (757)
Q Consensus 713 ~~~~~~ 718 (757)
+++++.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.7e-13 Score=139.57 Aligned_cols=248 Identities=13% Similarity=0.086 Sum_probs=164.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE----AASCNALLNALGREGDFKRMNQLFTEMKEN----DIEP 327 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p 327 (757)
......+..+...+.+.|++++|...|+++.+.++. + ..+|..+...|...|++++|...|+++... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 445667778889999999999999999999987644 4 367889999999999999999999987643 2122
Q ss_pred -ccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCC--------------------H
Q 048807 328 -SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK--------------------Q 386 (757)
Q Consensus 328 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------------------~ 386 (757)
...++..+...+...|++++|...++++++...... .......++..+...|...|+ +
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 245678888899999999999999999876420000 001124478888899999999 8
Q ss_pred HHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCh
Q 048807 387 EEALGLIEQMRLRLQKG--CMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGV-TPN----VVTLNTLVDGMCRHGRI 459 (757)
Q Consensus 387 ~~A~~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~ 459 (757)
++|.+.+++........ .+....++..+...|...|++++|.+.+++..+... .++ ..++..+...+...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 88888887764221111 111234667777777777888877777777664310 011 22555666666666666
Q ss_pred HHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 460 NSAVEFFQEVTRKGLC-AN----AVTYTILITAFCNVNNFQEAIKWFDDMS 505 (757)
Q Consensus 460 ~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (757)
++|...+++..+.... .+ ..++..+...|...|++++|...+++..
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 6666666665542100 01 3344555555555555555555555544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.5e-13 Score=141.37 Aligned_cols=281 Identities=12% Similarity=0.036 Sum_probs=160.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-C
Q 048807 370 VIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNA----VTYNCLINGFCKSGNIEKGLELFHLMKQE----GV-T 440 (757)
Q Consensus 370 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~ 440 (757)
...+..+...+...|++++|...|+++... .+.+. ..|..+...|...|++++|++.+++..+. +. .
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQA----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 344445566666667777777766666421 12222 35566666666666666666666665542 10 1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHH
Q 048807 441 PNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKG-----LCANAVTYTILITAFCNVNN----------FQEAIKWFDDMS 505 (757)
Q Consensus 441 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~ 505 (757)
....++..+...|...|++++|...++++.+.. ......++..+...|...|+ .++|...
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~----- 198 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA----- 198 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-----
Confidence 122344555555555555555555555544320 00112233444444444444 0000000
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-
Q 048807 506 RAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEA----GFR-PDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGM- 579 (757)
Q Consensus 506 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 579 (757)
+++|...+++..+. +.. ....++..+...|...|++++|...+++..+...
T Consensus 199 -----------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 199 -----------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 44444444443321 111 1223566677777777777777777777654310
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 048807 580 TPN----SVTYNTLISFLSKSGNFSAARRVLKKMVKEGL--V---PTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNV 650 (757)
Q Consensus 580 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 650 (757)
..+ ..++..+...|...|++++|...+++.++... . ....++..+...|...|++++|...+++..+...-
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 011 23667777888888888888888887765311 0 11456777888888889999998888877652111
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 651 SPN----TVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 651 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
..+ ..++..+...|.+.|++++|...|++..+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111 34677888999999999999999999886
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-12 Score=133.01 Aligned_cols=243 Identities=14% Similarity=0.106 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-ccch
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE----AASCNALLNALGREGDFKRMNQLFTEMKEN----DIEP-SVVT 331 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~ 331 (757)
.+......+.+.|++++|+..|+++.+.++. + ...+..+...|...|++++|.+.+++..+. +..| ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4555678889999999999999999987644 4 467889999999999999999999987653 2111 2556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCC--------------------HHHHHH
Q 048807 332 FGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK--------------------QEEALG 391 (757)
Q Consensus 332 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~ 391 (757)
+..+...+...|++++|...+++.++...... .......++..+...|...|+ +++|.+
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 78888899999999999999999876420000 001114478888899999999 888888
Q ss_pred HHHHHHHhhcC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHH
Q 048807 392 LIEQMRLRLQK-G-CMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGV-TPN----VVTLNTLVDGMCRHGRINSAVE 464 (757)
Q Consensus 392 ~~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~ 464 (757)
.+++....... + .+....++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88775321111 1 111234667777777777888888777777654310 001 2245556666666666666666
Q ss_pred HHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 465 FFQEVTRKGLC-AN----AVTYTILITAFCNVNNFQEAIKWFDDMS 505 (757)
Q Consensus 465 ~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (757)
.+++..+.... .+ ..++..+...|...|++++|...+++..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 66655432100 01 2344445555555555555555555543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-12 Score=133.41 Aligned_cols=276 Identities=16% Similarity=0.131 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCC-CCHHH
Q 048807 410 TYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN----VVTLNTLVDGMCRHGRINSAVEFFQEVTRK----GLC-ANAVT 480 (757)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~ 480 (757)
.+......+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.++++.+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444455556666666666666666554211 2 234555555555666666666655554432 100 11233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048807 481 YTILITAFCNVNNFQEAIKWFDDMSRAGC-SADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFC 559 (757)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 559 (757)
+..+...|...|++++|...+++..+... .++.. ....++..+...|.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHH
Confidence 44444445555555555555544433200 00100 00123444444455
Q ss_pred hcCC--------------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 048807 560 KKKM--------------------LDKAYEVLQEMEDI----GM-TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGL 614 (757)
Q Consensus 560 ~~g~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 614 (757)
..|+ +++|.+.+++..+. +. +....++..+...|...|++++|...+++..+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5555 55555555443321 10 11123455566666666777777766666553200
Q ss_pred -CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 048807 615 -VPT----VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN----TVIYNILIDSLCKNNQVELALSLMEEMKVK-- 683 (757)
Q Consensus 615 -~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 683 (757)
.++ ..++..+...+...|++++|...+++..+.....++ ..++..+...|...|++++|...++++.+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 011 225556666666667777776666665431110111 335566666677777777777777666531
Q ss_pred --CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 684 --EVRP-NTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 684 --g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
+..+ ...++..+..++.+.|++++|.++++++++
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 0000 123555666667777777777777777665
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-11 Score=122.36 Aligned_cols=219 Identities=9% Similarity=0.076 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCh-------hHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 276 DEAWDVLHVLMKFDAPLEAASCNALLNALGR-------EGDF-------KRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 276 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
++|..+|+++++..+. ++..|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5777788888776543 67778777777653 3554 6666666666652112233456666666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccccCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH-
Q 048807 342 LYRADEALEVFEKMIAGKETAEISVEPDVI-IFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFC- 419 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~- 419 (757)
.|++++|.++|+++++.. +.+.. +|..++..+.+.|++++|..+|++.. ...+.+...|...+....
T Consensus 112 ~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~----~~~p~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR----EDARTRHHVYVTAALMEYY 180 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH----TSTTCCTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-------ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHH
Confidence 666666666666666532 22222 56666666666666666666666653 112233334433332222
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHH
Q 048807 420 KSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKG-LCA--NAVTYTILITAFCNVNNFQE 496 (757)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~ 496 (757)
..|+.++|.++|++..+.. +-+...|..++..+.+.|++++|..+|+++++.. .+| ....|..++..+.+.|+.++
T Consensus 181 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~ 259 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 1456666666666555542 1244555555555555566666666666655542 222 34455555555555566666
Q ss_pred HHHHHHHHHHc
Q 048807 497 AIKWFDDMSRA 507 (757)
Q Consensus 497 A~~~~~~m~~~ 507 (757)
|..+++++.+.
T Consensus 260 a~~~~~~a~~~ 270 (308)
T 2ond_A 260 ILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65555555544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.46 E-value=7.9e-12 Score=116.29 Aligned_cols=167 Identities=12% Similarity=0.047 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+..+|..+...|.+.|++++|++.|+++++.++. +..+|..+...|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5667778888888888888888888888877654 67788888888888888888888888877664 334556666667
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING 417 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (757)
.+...++++.|.+.+.++.+.. +.+..++..+...|.+.|++++|++.|++... -.+.+..+|..+..+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~lg~~ 150 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS----IKPGFIRAYQSIGLA 150 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHH----hcchhhhHHHHHHHH
Confidence 7777788888888888777654 55667777777778888888888887777642 234566777777777
Q ss_pred HHHcCCHHHHHHHHHHHHhC
Q 048807 418 FCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~ 437 (757)
|.+.|++++|++.|++.++.
T Consensus 151 ~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 151 YEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHhC
Confidence 77777777777777777764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=7.6e-11 Score=119.78 Aligned_cols=219 Identities=12% Similarity=0.124 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLC-------QAGRM-------NDASLVVSKLKEAGFRPDIVCYNHLISGFCK 560 (757)
Q Consensus 495 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 560 (757)
++|..+|++++... +.+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777776653 456667776666654 34775 7888888888873122356678888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 048807 561 KKMLDKAYEVLQEMEDIGMTPNSV-TYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFC-VNGHVDEAM 638 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~ 638 (757)
.|++++|..+|+++++.. +.+.. .|..++..+.+.|++++|..+|+++++.. +++...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888763 22333 78888888888888999999998888754 234445544433322 368999999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 639 KIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKE-VRP--NTNTYNAMFKGLRQKNMLDKAFKLMDRM 715 (757)
Q Consensus 639 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (757)
.+|++..+. .+.+...|..++..+.+.|++++|..+|++.+... ++| ....|..++..+.+.|+.++|..+++++
T Consensus 190 ~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999888772 23466788888888888999999999999988852 344 4567888888888889999999999988
Q ss_pred HHc
Q 048807 716 IEH 718 (757)
Q Consensus 716 ~~~ 718 (757)
++.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.6e-12 Score=132.16 Aligned_cols=231 Identities=10% Similarity=0.077 Sum_probs=147.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-C-----CHHHHH
Q 048807 484 LITAFCNVNNFQEAIKWFDDMSRA----GCSA-DSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFR-P-----DIVCYN 552 (757)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~-----~~~~~~ 552 (757)
....+...|++++|+..|++..+. +.++ ...++..+...|...|++++|...+++..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445556667777777777666542 1011 2345666666677777777777766665542100 1 134667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHH
Q 048807 553 HLISGFCKKKMLDKAYEVLQEMEDIGM-TPN----SVTYNTLISFLSKSGNFSAARRVLKKMVKE----GL-VPTVVTYG 622 (757)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~ 622 (757)
.+...|...|++++|.+.|++..+... .++ ..++..+...|...|++++|...+++.++. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777788888888888888877664310 011 136777888888888888888888887762 22 22356677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC---HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 048807 623 ALIHAFCVNGHVDEAMKIFKELSSSSNVSPN---TVIYNILIDSLCKNNQ---VELALSLMEEMKVKEVRPN-TNTYNAM 695 (757)
Q Consensus 623 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 695 (757)
.+...|.+.|++++|...+++..+...-..+ ...+..+...|...|+ +++|+.++++.. ..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHH
Confidence 7888888888888888888776552111112 2235667777777887 777777776652 2222 3456677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 048807 696 FKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 696 ~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
+..|...|++++|.++++++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888888765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-11 Score=114.45 Aligned_cols=171 Identities=16% Similarity=0.055 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 547 DIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIH 626 (757)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 626 (757)
+...|..+...|.+.|++++|.+.|++.++.. |.+..++..+...|.+.|++++|...+.+..... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 55667777778888888888888888877765 5567777777888888888888888888777653 235666667777
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048807 627 AFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLD 706 (757)
Q Consensus 627 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 706 (757)
.+...++++.|...+.+..+. .+.+...+..++..|.+.|++++|++.|++..+.. +.+..+|..++.+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 777888888888888877762 23456677788888888888888888888887642 345677788888888888888
Q ss_pred HHHHHHHHHHHcCCCCCH
Q 048807 707 KAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 707 ~A~~~~~~~~~~g~~p~~ 724 (757)
+|++.|+++++ +.|+.
T Consensus 159 ~A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHHHH--TTHHH
T ss_pred HHHHHHHHHHh--CCccC
Confidence 88888888876 35554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-11 Score=130.38 Aligned_cols=297 Identities=8% Similarity=-0.031 Sum_probs=213.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHH--HHHcCCHHHHH-----------HHHHHHHhCCCCCCHH
Q 048807 380 LCKVGKQEEALGLIEQMRLRLQKGC--MPNAVTYNCLING--FCKSGNIEKGL-----------ELFHLMKQEGVTPNVV 444 (757)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~g~~p~~~ 444 (757)
+.+.+++++|..+++++... .... .++...|..++.. ....++++.+. +.++.+.... .+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~-~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQE-LDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-HHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHcCHHHHHHHHHHHHHH-HHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 45689999999999998654 2333 2334444444432 22234444444 6666665421 1111
Q ss_pred ------HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C--
Q 048807 445 ------TLNTLVDGMCRHGRINSAVEFFQEVTRK----GLCA-NAVTYTILITAFCNVNNFQEAIKWFDDMSRAG--C-- 509 (757)
Q Consensus 445 ------~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-- 509 (757)
.+......+...|++++|...++++.+. +..+ ...++..+...|...|++++|+..+++..+.- .
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 1223667788999999999999999874 1111 34678889999999999999999999887631 1
Q ss_pred --CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C
Q 048807 510 --SADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFR-PD----IVCYNHLISGFCKKKMLDKAYEVLQEMEDI----G 578 (757)
Q Consensus 510 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~ 578 (757)
+....+++.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 112357888999999999999999999887754111 12 247888999999999999999999998872 2
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhcCCC
Q 048807 579 M-TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE----GLVPTVVTYGALIHAFCVNGH---VDEAMKIFKELSSSSNV 650 (757)
Q Consensus 579 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~ 650 (757)
. +....++..+...|.+.|++++|...+++.++. +-+.....+..+...|...|+ +++|+.++++... .
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~---~ 335 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML---Y 335 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC---H
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC---H
Confidence 2 334678899999999999999999999998763 111122335667788888998 7888888876522 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 651 SPNTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 651 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
+.....+..+...|.+.|++++|...|++..+
T Consensus 336 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12234678899999999999999999999875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.7e-12 Score=134.40 Aligned_cols=193 Identities=12% Similarity=0.017 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 547 DIVCYNHLISGFCKKKML-DKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALI 625 (757)
Q Consensus 547 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 625 (757)
+...+..+...|...|++ ++|.+.|++.++.. +.+...|..+...|.+.|++++|...|++.++. .|+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 344444555555555555 55555555554443 333445555555555555555555555555543 24444455555
Q ss_pred HHHHhc---------CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCC--
Q 048807 626 HAFCVN---------GHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKN--------NQVELALSLMEEMKVKEVR-- 686 (757)
Q Consensus 626 ~~~~~~---------g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~-- 686 (757)
..|... |++++|+..+++..+. .+.+...|..++.+|... |++++|+..|++..+.. +
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCc
Confidence 555555 5555555555555441 122344455555555555 55555555555555421 1
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 687 -PNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHP-DYISMEILTEWLSEAGQTEKLKKFV 747 (757)
Q Consensus 687 -p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 747 (757)
.+...|..++.+|...|++++|.+.|+++++. .| +...+..+...+...|+.++|.+.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 24445555555555555555555555555543 23 2244445555555555555555443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-12 Score=136.82 Aligned_cols=216 Identities=9% Similarity=-0.003 Sum_probs=177.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHH
Q 048807 274 KTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDF-KRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVF 352 (757)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 352 (757)
.+++|++.++......+ .+...|..+...|...|++ ++|.+.|++.++.. +.+...|..+...|.+.|++++|++.|
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35677777777766543 4788899999999999999 99999999998875 445778899999999999999999999
Q ss_pred HHHHhCCCCCcccccCCHhHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc--
Q 048807 353 EKMIAGKETAEISVEPDVIIFNTLIDGLCKV---------GKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS-- 421 (757)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 421 (757)
+++++. .|+..++..+...|... |++++|++.+++... -.+.+...|..+..+|...
T Consensus 161 ~~al~~--------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 161 SGALTH--------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ----MDVLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HHHHTT--------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhh--------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHHH
Confidence 999885 46678889999999998 999999999999852 2456788999999999988
Q ss_pred ------CCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048807 422 ------GNIEKGLELFHLMKQEGVT--PNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNN 493 (757)
Q Consensus 422 ------g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 493 (757)
|++++|++.|++..+.... -+...|..+...|...|++++|.+.|+++.+.... +...+..+...+...|+
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSR 307 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 8899999999999886320 37788888999999999999999999998887543 66778888888888888
Q ss_pred HHHHHHHHHHH
Q 048807 494 FQEAIKWFDDM 504 (757)
Q Consensus 494 ~~~A~~~~~~m 504 (757)
+++|++.+.++
T Consensus 308 ~~eAi~~~~~~ 318 (474)
T 4abn_A 308 LTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHhccc
Confidence 88888766544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=132.92 Aligned_cols=250 Identities=14% Similarity=0.068 Sum_probs=165.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKF-------DAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN----- 323 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 323 (757)
+.+..++..+...|...|++++|..+|+++.+. +.+....++..+...|...|++++|...|+++++.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 445678899999999999999999999999873 23335678999999999999999999999998864
Q ss_pred -CC-CCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 048807 324 -DI-EPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETA-EISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRL 400 (757)
Q Consensus 324 -g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 400 (757)
+- +....++..+...|...|++++|.+.++++++..... ....+....++..+...|...|++++|.+.++++....
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 21 2235678888999999999999999999988641000 00013345678889999999999999999999886321
Q ss_pred cCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCH-------HHHHHHHHHHHHcCChHHH
Q 048807 401 QKG----CMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE-------GVTPNV-------VTLNTLVDGMCRHGRINSA 462 (757)
Q Consensus 401 ~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~-------~~~~~li~~~~~~g~~~~A 462 (757)
... .+....++..+...|...|++++|.+.++++.+. ...+.. ..+..+...+...+.+.+|
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 111 2233567888999999999999999999988863 111111 1112222223333444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048807 463 VEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSR 506 (757)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (757)
...+....... +.+..++..+...|.+.|++++|.+.|++..+
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44454444321 12344556666666666666666666666554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.9e-12 Score=128.05 Aligned_cols=175 Identities=15% Similarity=0.086 Sum_probs=123.8
Q ss_pred cCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----
Q 048807 367 EPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQK----GCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE----- 437 (757)
Q Consensus 367 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 437 (757)
+.+..++..+...|...|++++|..+++++...... ..+....++..+...|...|++++|.+.++++.+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 445677888999999999999999999887532111 22334667888888999999999999998888764
Q ss_pred -CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 048807 438 -GV-TPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK------GL-CANAVTYTILITAFCNVNNFQEAIKWFDDMSRA- 507 (757)
Q Consensus 438 -g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 507 (757)
+. +....++..+...|...|++++|...++++.+. +. +....++..+...|...|++++|+..++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 223456777888888888888888888887764 11 223456677777888888888888888777654
Q ss_pred -----C-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 048807 508 -----G-CSADSVVYFTLISGLCQAGRMNDASLVVSKLKE 541 (757)
Q Consensus 508 -----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 541 (757)
+ .+....++..+...+...|++++|...++++.+
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 122234566677777777777777777777664
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-10 Score=120.54 Aligned_cols=230 Identities=11% Similarity=0.090 Sum_probs=149.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CC-CHHHHH
Q 048807 484 LITAFCNVNNFQEAIKWFDDMSRAGC-SA----DSVVYFTLISGLCQAGRMNDASLVVSKLKEAGF-----RP-DIVCYN 552 (757)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-----~~-~~~~~~ 552 (757)
....+...|++++|+..|++..+... .+ ...++..+...|...|++++|...+++..+... .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455667777777777777654310 11 234566677777777777777777776554210 11 134667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 048807 553 HLISGFCKKKMLDKAYEVLQEMEDI----GMTP-NSVTYNTLISFLSKSGNFSAARRVLKKMVK-----EGLVPTVVTYG 622 (757)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 622 (757)
.+...|...|++++|.+.|++..+. +.++ ...++..+...|...|++++|...+++.++ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 7778888888888888888776643 1111 124667778888888888888888888776 32 22356777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCC--C-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 048807 623 ALIHAFCVNGHVDEAMKIFKELSSSSNVS--P-NTVIYNILIDSLCKNNQ---VELALSLMEEMKVKEVRPN-TNTYNAM 695 (757)
Q Consensus 623 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 695 (757)
.+...|.+.|++++|...+++..+...-. + ....+..+...|...|+ +++|+..+++.. ..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHH
Confidence 78888888888888888888776632211 2 23345666666777777 777777776632 1222 3456677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 048807 696 FKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 696 ~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
+..|...|++++|.++++++++
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888888764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-10 Score=120.93 Aligned_cols=312 Identities=10% Similarity=-0.014 Sum_probs=218.6
Q ss_pred ccCCHhHHHHHHHHH--HHcCCHHHHHHHHHHHHHhhcCCCCCC--HHHHHHHHHHH--HHcCCHHHHH---------HH
Q 048807 366 VEPDVIIFNTLIDGL--CKVGKQEEALGLIEQMRLRLQKGCMPN--AVTYNCLINGF--CKSGNIEKGL---------EL 430 (757)
Q Consensus 366 ~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~--~~~g~~~~A~---------~~ 430 (757)
..|...+-+.|-.+| ...+++++|.++++++... ......| ...|..++..- .-.+..+.+. +.
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~-~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQD-IQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-GGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence 346666777777787 7899999999999998643 2222223 44445444421 1112222222 55
Q ss_pred HHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHH
Q 048807 431 FHLMKQEGVTPN----VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLC-A----NAVTYTILITAFCNVNNFQEAIKWF 501 (757)
Q Consensus 431 ~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~ 501 (757)
++.+.....+.+ ...+......+...|++++|...|+++.+.... + ...++..+...|...|+++.|...+
T Consensus 85 l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 555543211101 112334556678899999999999998865211 2 2457888999999999999999999
Q ss_pred HHHHHcC--C---C-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 502 DDMSRAG--C---S-ADSVVYFTLISGLCQAGRMNDASLVVSKLKEA----GFRP-DIVCYNHLISGFCKKKMLDKAYEV 570 (757)
Q Consensus 502 ~~m~~~~--~---~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~ 570 (757)
++..+.. . . ....+++.+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|...
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9877531 1 1 12457788999999999999999999887653 1111 234788899999999999999999
Q ss_pred HHHHHh-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CC-CHHHHHHHHHHHHhcCC---HHHHH
Q 048807 571 LQEMED-----IGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGL---VP-TVVTYGALIHAFCVNGH---VDEAM 638 (757)
Q Consensus 571 ~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p-~~~~~~~li~~~~~~g~---~~~A~ 638 (757)
+++..+ .. +....++..+...|.+.|++++|...+++..+... .+ ....+..+...|...|+ +.+|+
T Consensus 245 ~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al 323 (378)
T 3q15_A 245 FQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323 (378)
T ss_dssp HHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999887 43 33467888999999999999999999999887421 12 23456666667777888 88888
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 639 KIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 639 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
..+++... .+.....+..++..|.+.|++++|...|++..+
T Consensus 324 ~~~~~~~~---~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 324 SYFEKKNL---HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCC---hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88876322 112234677899999999999999999999875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=9e-10 Score=115.25 Aligned_cols=277 Identities=14% Similarity=0.045 Sum_probs=177.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCc----cchH
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAA----SCNALLNALGREGDFKRMNQLFTEMKENDI-EPS----VVTF 332 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~ 332 (757)
...+...+...|++++|...+++.....+..+.. +++.+...+...|++++|.+.+++...... .++ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445567778999999999999998876443432 567778889999999999999999876310 011 1235
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCccccc--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC-CCCCCH
Q 048807 333 GTIINRLCKLYRADEALEVFEKMIAGKETAEISVE--P-DVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQK-GCMPNA 408 (757)
Q Consensus 333 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~ 408 (757)
..+...+...|++++|...+++.++..... +.+ | ...++..+...+...|++++|...+++....... +.+...
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQ--HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--ccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 667788899999999999999987632100 011 2 3456777888999999999999999987532111 111124
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHH
Q 048807 409 VTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN-VVTLN-----TLVDGMCRHGRINSAVEFFQEVTRKGLCA---NAV 479 (757)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~ 479 (757)
.++..+...+...|++++|.+.+++.......++ ...+. ..+..+...|++++|...+++.......+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 5677888888899999999999888765321111 11111 23344667888888888877766543211 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHH
Q 048807 480 TYTILITAFCNVNNFQEAIKWFDDMSRA----GCSADS-VVYFTLISGLCQAGRMNDASLVVSKLK 540 (757)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~ 540 (757)
.+..+...+...|++++|...+++.... |..++. ..+..+...+...|+.++|...+++..
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4555666777777777777777665432 111111 133334444555555555555554443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-09 Score=114.18 Aligned_cols=273 Identities=11% Similarity=0.008 Sum_probs=127.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH----HHHHH
Q 048807 413 CLINGFCKSGNIEKGLELFHLMKQEGVTPNVV----TLNTLVDGMCRHGRINSAVEFFQEVTRKGLC-ANA----VTYTI 483 (757)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~ 483 (757)
.....+...|++++|...+++........+.. ++..+...+...|++++|.+.+++..+.... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33444555666666666666655542111111 3344445555555555555555554432100 011 12233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHh
Q 048807 484 LITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFR--P-DIVCYNHLISGFCK 560 (757)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~-~~~~~~~li~~~~~ 560 (757)
+...+...|++++|...+++..+.. .+.+.. | ....+..+...+..
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLI-------------------------------NEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhccccCcHHHHHHHHHHHHHHH
Confidence 4444444555555555554443310 000111 1 12234445555555
Q ss_pred cCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHH----HHHHHHHh
Q 048807 561 KKMLDKAYEVLQEMEDIGMT----PNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVP--TVVTYG----ALIHAFCV 630 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~----~li~~~~~ 630 (757)
.|++++|...+++..+.... ....++..+...+...|++++|...+++.......+ ...... ..+..+..
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 227 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 55555555555555432110 012345555555666666666666666554321011 111111 12233556
Q ss_pred cCCHHHHHHHHHHhhhcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHHc
Q 048807 631 NGHVDEAMKIFKELSSSSNVSP---NTVIYNILIDSLCKNNQVELALSLMEEMKV----KEVRPNT-NTYNAMFKGLRQK 702 (757)
Q Consensus 631 ~g~~~~A~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~~~~~l~~~~~~~ 702 (757)
.|++++|...+++.... ...+ ....+..+...+...|++++|...+++... .|..++. ..+..+..++...
T Consensus 228 ~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 228 TGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp TTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 66666666666665441 1111 122345556666666666666666666543 1111112 2444555666666
Q ss_pred CCHHHHHHHHHHHHH
Q 048807 703 NMLDKAFKLMDRMIE 717 (757)
Q Consensus 703 g~~~~A~~~~~~~~~ 717 (757)
|+.++|...+++.++
T Consensus 307 g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 307 GRKSDAQRVLLDALK 321 (373)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777766666653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-10 Score=107.54 Aligned_cols=165 Identities=15% Similarity=0.094 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHH
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRL 339 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 339 (757)
..+..++..+...|++++|.+.|+++.+..+. +..++..++..+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 35666777778888888888888887766543 67777778888888888888888888877663 33556677777777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 048807 340 CKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFC 419 (757)
Q Consensus 340 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (757)
...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.++++.. ..+.+...+..++..+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-------PINFNVRFRLGVALDNLGRFDEAIDSFKIALG----LRPNEGKVHRAIAFSYE 155 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh----cCccchHHHHHHHHHHH
Confidence 77788888888887777653 45666777777777777777777777777642 12445667777777777
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 048807 420 KSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~ 437 (757)
..|++++|.+.++++.+.
T Consensus 156 ~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 156 QMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHc
Confidence 777777777777776654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.1e-11 Score=133.86 Aligned_cols=168 Identities=14% Similarity=0.048 Sum_probs=150.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
|.+..+++.|...|.+.|++++|++.|+++++..+. +..+|+.+..+|.+.|++++|++.|++.++.+ +-+..+|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 446778999999999999999999999999998765 78999999999999999999999999999875 4457889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLI 415 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 415 (757)
...|.+.|++++|++.|+++++.+ +.+..+|+.+...|.+.|++++|++.|++... -.+.+...|..+.
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~----l~P~~~~a~~~L~ 152 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-------PAFADAHSNLASIHKDSGNIPEAIASYRTALK----LKPDFPDAYCNLA 152 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCChHHHhhhh
Confidence 999999999999999999999875 56788999999999999999999999999852 2356788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 048807 416 NGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~ 436 (757)
..|...|++++|.+.++++.+
T Consensus 153 ~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 153 HCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHTTCCTTHHHHHHHHHH
T ss_pred hHHHhcccHHHHHHHHHHHHH
Confidence 999999999999998888765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-10 Score=108.65 Aligned_cols=209 Identities=9% Similarity=0.010 Sum_probs=164.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTII 336 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 336 (757)
.|+..+..+...|.+.|++++|++.|+++.+..++++...+..+...+.+.|++++|.+.|++.++.+ +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46678888999999999999999999999998875688888889999999999999999999999875 44677889999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccccCCH-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC--C
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAEISVEPDV-------IIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP--N 407 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~ 407 (757)
..|...|++++|++.+++.++.. +.+. .+|..+...+...|++++|++.|++.. ...+. +
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al----~~~p~~~~ 152 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-------PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT----DVTSKKWK 152 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT----TSSCHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH----hcCCCccc
Confidence 99999999999999999999864 4445 568888999999999999999999983 33344 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048807 408 AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILIT 486 (757)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 486 (757)
...|..+...|...| ...++++...+. .+...|.... ....+.+++|...+++..+..+. +..+...+..
T Consensus 153 ~~~~~~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~ 222 (228)
T 4i17_A 153 TDALYSLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 678888888886654 344566655532 2444454443 33457789999999999987543 5555544433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.6e-10 Score=104.63 Aligned_cols=164 Identities=14% Similarity=0.087 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHH
Q 048807 295 ASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFN 374 (757)
Q Consensus 295 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (757)
..|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~ 80 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-------PDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHH
Confidence 345555556666666666666666655542 2344455555555666666666666666655542 33455555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMC 454 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 454 (757)
.++..+...|++++|.+.++++.. ..+.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAE----ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYE 155 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHh----cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHH
Confidence 555566666666666666655531 123344555555555555555555555555555442 123444445555555
Q ss_pred HcCChHHHHHHHHHHHH
Q 048807 455 RHGRINSAVEFFQEVTR 471 (757)
Q Consensus 455 ~~g~~~~A~~~~~~~~~ 471 (757)
..|++++|...++++.+
T Consensus 156 ~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 156 QMGRHEEALPHFKKANE 172 (186)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555544443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-10 Score=127.27 Aligned_cols=169 Identities=15% Similarity=0.079 Sum_probs=150.3
Q ss_pred ccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 048807 366 VEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVT 445 (757)
Q Consensus 366 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 445 (757)
.|.+..+++.|...|.+.|++++|++.|++... -.+.+..+|+.+..+|.+.|++++|++.|++.++.... +..+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~----l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a 79 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADA 79 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 466788999999999999999999999999852 23567899999999999999999999999999987433 6789
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 048807 446 LNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQ 525 (757)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 525 (757)
|..+...|.+.|++++|++.|+++++.... +..+|+.+...|.+.|++++|++.|++.++.. +.+...+..+...+..
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHh
Confidence 999999999999999999999999987544 78899999999999999999999999999875 5578899999999999
Q ss_pred cCChhHHHHHHHHHHH
Q 048807 526 AGRMNDASLVVSKLKE 541 (757)
Q Consensus 526 ~g~~~~A~~~~~~~~~ 541 (757)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999998888765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-09 Score=105.16 Aligned_cols=200 Identities=13% Similarity=0.024 Sum_probs=154.7
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048807 511 ADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLI 590 (757)
Q Consensus 511 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 590 (757)
.|+..+......+...|++++|...|++..+....++...+..+..++...|++++|...|++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46778888899999999999999999999887654677777779999999999999999999999875 44667888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC---HHHHHHH
Q 048807 591 SFLSKSGNFSAARRVLKKMVKEGLVPTV-------VTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN---TVIYNIL 660 (757)
Q Consensus 591 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l 660 (757)
..|...|++++|+..+++.++.. +.+. ..|..+...+...|++++|+..|++..+ ..|+ ...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 99999999999999999998853 2244 4577788888899999999999999887 3455 4577778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 048807 661 IDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYI 725 (757)
Q Consensus 661 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 725 (757)
..+|...| ...++++...+ ..+...|.... ....|.+++|+..+++.++. .|+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 88876544 44556665543 33445554433 34556789999999999974 56553
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-10 Score=114.11 Aligned_cols=230 Identities=12% Similarity=0.063 Sum_probs=146.4
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhcc------C--C-CcchHHHHHHHHHhcCChhhHH
Q 048807 131 SLFDLYKACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNN------L--R-NTHVRNVLIDVLLRCDHDRDAF 201 (757)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~--~-~~~~~~~l~~~~~~~g~~~~A~ 201 (757)
+|++++..+.....|....++..+..+|...|++++|+..|+++... . + ...+++.++.+|...|++++|+
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 34444444443343556678899999999999999999999887642 1 1 2357899999999999999999
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 048807 202 NVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDV 281 (757)
Q Consensus 202 ~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 281 (757)
+.|+++... ..... ....+....++..+...|...|++++|++.
T Consensus 106 ~~~~~al~~--------------~~~~~----------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 149 (283)
T 3edt_B 106 PLCKRALEI--------------REKVL----------------------GKFHPDVAKQLNNLALLCQNQGKAEEVEYY 149 (283)
T ss_dssp HHHHHHHHH--------------HHHHH----------------------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHH--------------HHHHc----------------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999998652 00000 001122356788899999999999999999
Q ss_pred HHHHHhC------C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-------CCCCccc-hHHHHHHHHHhcCChh
Q 048807 282 LHVLMKF------D-APLEAASCNALLNALGREGDFKRMNQLFTEMKEN-------DIEPSVV-TFGTIINRLCKLYRAD 346 (757)
Q Consensus 282 ~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~-~~~~li~~~~~~g~~~ 346 (757)
|+++.+. + .+....++..+...|.+.|++++|.+.|+++.+. ...+... .|..+...+...+...
T Consensus 150 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (283)
T 3edt_B 150 YRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR 229 (283)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchh
Confidence 9999875 1 1124578889999999999999999999998763 1223333 3333333333322222
Q ss_pred HHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 347 EALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
.+.. +..+...-.......+....++..+...|.+.|++++|..++++..
T Consensus 230 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 230 DSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp C-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222 2111110000000013334567777777777777777777777663
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-10 Score=114.17 Aligned_cols=235 Identities=14% Similarity=0.052 Sum_probs=143.2
Q ss_pred HcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCC-ccchHHHHH
Q 048807 271 RKGKTDEAWDVLHVLMK-------FDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN------DIEP-SVVTFGTII 336 (757)
Q Consensus 271 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li 336 (757)
..|++++|+..|++..+ .+.+....++..+...|...|++++|...|+++++. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555555444 222334667888888888888888888888888754 2122 355678888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCc-ccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC----CCCCCHHHH
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAE-ISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQK----GCMPNAVTY 411 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~ 411 (757)
..|...|++++|++.++++++...... ...+....++..+...|...|++++|.+.++++...... ..+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 889999999999999998876410000 001334678889999999999999999999988532111 122345678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChHHHHH------HHHHHHHCCCCCC
Q 048807 412 NCLINGFCKSGNIEKGLELFHLMKQE-------GVTPN-VVTLNTLVDGMCRHGRINSAVE------FFQEVTRKGLCAN 477 (757)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~-~~~~~~li~~~~~~g~~~~A~~------~~~~~~~~~~~~~ 477 (757)
..+...|...|++++|.+.++++.+. ...+. ...+..+...+...+....+.. .+..... ..+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 88999999999999999999888763 11222 2233333333333222222211 1111110 01112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048807 478 AVTYTILITAFCNVNNFQEAIKWFDDMSR 506 (757)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (757)
..++..+...|...|++++|...|++.++
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555566666666666666666666553
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=6.5e-09 Score=104.40 Aligned_cols=96 Identities=10% Similarity=0.023 Sum_probs=42.1
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------
Q 048807 551 YNHLISGFCKK-KMLDKAYEVLQEMEDIGMT-PN----SVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTV------ 618 (757)
Q Consensus 551 ~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------ 618 (757)
++.+..+|... |++++|...|++..+.... .+ ..++..+...|.+.|++++|+..|++..+.......
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 44444555553 5555555555554432100 00 123444455555555555555555555543211111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 619 VTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
..+..+..++...|++++|...|++..+
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1233444444445555555555544433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-07 Score=102.21 Aligned_cols=379 Identities=11% Similarity=0.025 Sum_probs=211.7
Q ss_pred HcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC-hhHH
Q 048807 271 RKG-KTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR-ADEA 348 (757)
Q Consensus 271 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A 348 (757)
+.| +++.|..+|++++..- |. |+++.+.++|++.+.. .|+...|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 3777777777776542 12 7788888888888874 4677788877776666653 3556
Q ss_pred HHHHHHHHhCCCCCcccccCCHhHHHHHHHHHH----HcCCHHHHHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHHcC
Q 048807 349 LEVFEKMIAGKETAEISVEPDVIIFNTLIDGLC----KVGKQEEALGLIEQMRLRLQKGCMPN--AVTYNCLINGFCKSG 422 (757)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g 422 (757)
..+|+.++..-. .-+.+...|...+..+. ..|+.+.+.++|++.. . .++. ...|...... .+..
T Consensus 68 ~~~fe~al~~vg----~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL---~--~P~~~~~~lw~~Y~~f-E~~~ 137 (493)
T 2uy1_A 68 YEVYEFTLGQFE----NYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRAL---Q--TPMGSLSELWKDFENF-ELEL 137 (493)
T ss_dssp HHHHHHHHHHST----TCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHH---T--SCCTTHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHcC----CCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH---h--ChhhhHHHHHHHHHHH-HHHh
Confidence 777887775310 01345678888777654 3467888999999884 2 2221 1122222111 1111
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----HH
Q 048807 423 NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVN--N-----FQ 495 (757)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~ 495 (757)
+...+..++.+.. +.+..|..+++.+...-...+...|...+..-...+ - .+
T Consensus 138 ~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~ 196 (493)
T 2uy1_A 138 NKITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHES 196 (493)
T ss_dssp CHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHH
T ss_pred ccccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHH
Confidence 1122222221111 122233333333222100012234444443322110 0 23
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 496 EAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEME 575 (757)
Q Consensus 496 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (757)
.+..+|++++... +.+...|...+.-+.+.|+.++|..++++.... +.+...|.. |....+.++. ++.+.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHH
Confidence 4556666666542 445666666666666777777777777777666 223222221 2111111111 22221
Q ss_pred hCC---------C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 048807 576 DIG---------M---TPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNG-HVDEAMKIFK 642 (757)
Q Consensus 576 ~~~---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~ 642 (757)
+.- . ......|...+..+.+.++.+.|..+|+++ +. ...+...|...+..-...+ +.+.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 110 0 011245666677777788899999999999 32 1234445543333323333 6999999999
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 643 ELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 643 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
...+..+ .+...+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 345 ~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9888432 344556777888888999999999999973 3567888888877888999999998988874
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.7e-09 Score=105.43 Aligned_cols=217 Identities=12% Similarity=0.000 Sum_probs=136.6
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCc-cchHHHHHHHHHhcCChhHH
Q 048807 274 KTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN----DIEPS-VVTFGTIINRLCKLYRADEA 348 (757)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A 348 (757)
++++|.+.|+++ +..|...|++++|.+.|.+..+. |-+++ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366777666665 33566777777777777776543 21111 45677888888888888888
Q ss_pred HHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhcC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 048807 349 LEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKV-GKQEEALGLIEQMRLRLQK-GCMP-NAVTYNCLINGFCKSGNIE 425 (757)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~ 425 (757)
+..+++.++..... .....-..+++.+...|... |++++|+..|++....... +... ...+++.+...+.+.|+++
T Consensus 97 ~~~~~~Al~l~~~~-g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 97 VDSLENAIQIFTHR-GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 88888877532000 00001145778888888886 9999999999887532111 1000 1356788888888888888
Q ss_pred HHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-C---HHHHHHHHHHHH--hcCC
Q 048807 426 KGLELFHLMKQEGVTPNV------VTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCA-N---AVTYTILITAFC--NVNN 493 (757)
Q Consensus 426 ~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~---~~~~~~li~~~~--~~g~ 493 (757)
+|++.|++..+....... ..|..+..++...|++++|...|++..+..... + ...+..++..|. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 888888888876433221 146667777888888888888888877642210 1 112333444443 3456
Q ss_pred HHHHHHHHHHHHH
Q 048807 494 FQEAIKWFDDMSR 506 (757)
Q Consensus 494 ~~~A~~~~~~m~~ 506 (757)
+++|+..|+++..
T Consensus 256 ~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 256 LSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHTTSSC
T ss_pred HHHHHHHhccCCc
Confidence 7777777766544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.04 E-value=5.6e-08 Score=95.58 Aligned_cols=179 Identities=10% Similarity=0.031 Sum_probs=90.2
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 497 AIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGF-RPDIVCYNHLISGFCKKKMLDKAYEVLQEME 575 (757)
Q Consensus 497 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (757)
|+..|++....+ +++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555443 33444444555566666666666666666554432 1234455555666666666666666666665
Q ss_pred hCCCCC-----CHHHHHHHHHHHH--HcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 576 DIGMTP-----NSVTYNTLISFLS--KSG--NFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 576 ~~~~~~-----~~~~~~~li~~~~--~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
+. .| +..+...|+.++. ..| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 2334444444422 223 566666666665543 23322323333355566666666666654443
Q ss_pred cC----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 647 SS----N----VSPNTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 647 ~~----~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
.. . -+.|..++..+|......|+ +|.+++.++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 10 0 02233444444444444554 55566666555
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-08 Score=101.14 Aligned_cols=212 Identities=11% Similarity=0.032 Sum_probs=136.2
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCccc
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE---AASCNALLNALGREGDFKRMNQLFTEMKENDI--EPSVV 330 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~ 330 (757)
+.+...+..+...+.+.|++++|+..|+++.+..+. + ..++..+..+|.+.|++++|...|++.++... +....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456677888899999999999999999999997654 4 67899999999999999999999999998631 11234
Q ss_pred hHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 048807 331 TFGTIINRLCK--------LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQK 402 (757)
Q Consensus 331 ~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 402 (757)
.+..+..++.. .|++++|+..|+++++.. +.+......+.. +..+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~--------------~~~~~~---- 145 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-------PNHELVDDATQK--------------IRELRA---- 145 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-------TTCTTHHHHHHH--------------HHHHHH----
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-------cCchhHHHHHHH--------------HHHHHH----
Confidence 56777888888 999999999999999864 333333322211 111100
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHc----------CChHHHHHHHHHHH
Q 048807 403 GCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTP--NVVTLNTLVDGMCRH----------GRINSAVEFFQEVT 470 (757)
Q Consensus 403 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~ 470 (757)
.-...+..+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...|++++
T Consensus 146 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 146 ---KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 001124455566666666666666666666542111 123455555555544 66666666666666
Q ss_pred HCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 048807 471 RKGLCAN--AVTYTILITAFCNVNNFQE 496 (757)
Q Consensus 471 ~~~~~~~--~~~~~~li~~~~~~g~~~~ 496 (757)
+..+... ..+...+...+.+.+++++
T Consensus 223 ~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 223 QIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 6532211 2233344444444444443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.04 E-value=5.4e-07 Score=97.01 Aligned_cols=378 Identities=11% Similarity=-0.002 Sum_probs=235.0
Q ss_pred HcC-ChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcC
Q 048807 306 REG-DFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVG 384 (757)
Q Consensus 306 ~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 384 (757)
+.| +++.|..+|+.++.. -|. |+++.+..+|++.+.. .|++..|...+....+.+
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--------~ps~~LW~~Y~~f~~~~~ 61 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--------SYNLDLWMLYIEYVRKVS 61 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--------CCCHHHHHHHHHHHHHHC
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhC
Confidence 456 488899999988875 233 7899999999999874 469999999998888777
Q ss_pred C-HHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 385 K-QEEALGLIEQMRLRLQKG-CMPNAVTYNCLINGFC----KSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGR 458 (757)
Q Consensus 385 ~-~~~A~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 458 (757)
. .+....+|+.... .-| .+.+...|...+..+. .+|+.+.+.++|++.+......-...|...... .....
T Consensus 62 ~~~~~i~~~fe~al~--~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~ 138 (493)
T 2uy1_A 62 QKKFKLYEVYEFTLG--QFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELN 138 (493)
T ss_dssp ----CTHHHHHHHHH--HSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHC
T ss_pred chHHHHHHHHHHHHH--HcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhc
Confidence 4 4556677777652 223 3456788888887654 356788999999999874211111122222111 11111
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--C-----hhH
Q 048807 459 INSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAG--R-----MND 531 (757)
Q Consensus 459 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~-----~~~ 531 (757)
...+..+..+.. +.+..|..+++++...-...+...|...+.--...+ - .+.
T Consensus 139 ~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~R 197 (493)
T 2uy1_A 139 KITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESR 197 (493)
T ss_dssp HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHH
T ss_pred cccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHH
Confidence 222222222211 233444555544432100113345655555433221 1 345
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 532 ASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVK 611 (757)
Q Consensus 532 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (757)
+..+|+++.... +.+...|...+..+.+.|+.+.|..+|++.... |.+...|. .|+...+.++. ++.+.+
T Consensus 198 v~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 198 MHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHH
Confidence 677899988764 446788988899899999999999999999988 44443333 23332222222 222221
Q ss_pred CC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 048807 612 EG---------LVP---TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNN-QVELALSLME 678 (757)
Q Consensus 612 ~~---------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~ 678 (757)
.- ..+ ....|...+..+.+.+..+.|..+|++. +..+ .+...|...+..-...+ +.+.|..+|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 10 001 1245666666667788899999999998 4222 34445544333333334 6999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 679 EMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 679 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
...+.. +.++..|...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+++.+++.
T Consensus 345 ~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 345 SGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 998752 3345667778888889999999999999972 24678888888888889999998877664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.8e-09 Score=97.93 Aligned_cols=162 Identities=9% Similarity=0.017 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHHcCChhHHHHHHHHHHHCC
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNA----------------LLNALGREGDFKRMNQLFTEMKEND 324 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g 324 (757)
.+......+.+.|++++|+..|+++.+.++. +...|.. +...|.+.|++++|...|++.++.+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3444566777889999999999998886543 4455555 5555556666666666666555543
Q ss_pred CCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhcC
Q 048807 325 IEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK--QEEALGLIEQMRLRLQK 402 (757)
Q Consensus 325 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~ 402 (757)
+.+...+..+...+...|++++|+..|+++++.+ |.+..+|..+...|...|+ .+.+...+....
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----- 151 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-------ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----- 151 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-----
Confidence 2344555555555555666666666666655543 3445555555555544432 222333333321
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 403 GCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 403 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (757)
...|....+.....++...|++++|+..|++.++
T Consensus 152 ~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 152 SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 0111122233334444445555555555555554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.02 E-value=4.7e-08 Score=96.13 Aligned_cols=176 Identities=12% Similarity=0.054 Sum_probs=97.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048807 567 AYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGL-VPTVVTYGALIHAFCVNGHVDEAMKIFKELS 645 (757)
Q Consensus 567 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 645 (757)
|...|++..+.+ +++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665544 34455555666666667777777777776655442 1244555666666777777777777777665
Q ss_pred hcCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 646 SSSNVSP-----NTVIYNILIDS--LCKNN--QVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 646 ~~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
+ ..| +..+...|+.+ ....| ++++|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+.
T Consensus 164 ~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5 234 23333344433 22223 677777777776553 3443333333336666677777777766554
Q ss_pred Hc-----CC---CCCH-HHHHHHHHHHHhcCCHHHHHHHHhhc
Q 048807 717 EH-----AC---HPDY-ISMEILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 717 ~~-----g~---~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
+. .. .|+. .+...++......|+ +|.++++++
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 32 00 1333 455455555555565 566666554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-08 Score=99.43 Aligned_cols=206 Identities=13% Similarity=0.058 Sum_probs=119.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHH
Q 048807 511 ADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPD---IVCYNHLISGFCKKKMLDKAYEVLQEMEDIGM--TPNSVT 585 (757)
Q Consensus 511 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~ 585 (757)
.+...+..+...+.+.|++++|...|+++.+.... + ...+..+..+|.+.|++++|...|+++.+... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34555556666666666666666666666665321 2 44556666666666666666666666665421 111334
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHH
Q 048807 586 YNTLISFLSK--------SGNFSAARRVLKKMVKEGLVPT-VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVI 656 (757)
Q Consensus 586 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 656 (757)
+..+..++.. .|++++|+..|+++++.. |+ ......+ ..+..+.. .....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~-----~~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRA-----KLARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHH-----HHHHH
Confidence 5555556665 666666666666666542 22 1111111 01111110 00112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCC
Q 048807 657 YNILIDSLCKNNQVELALSLMEEMKVKEVRPN----TNTYNAMFKGLRQK----------NMLDKAFKLMDRMIEHACHP 722 (757)
Q Consensus 657 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p 722 (757)
+..++..|.+.|++++|+..|+++++. .|+ ...+..++.+|... |++++|+..++++++. .|
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p 226 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FP 226 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CC
Confidence 466788899999999999999998874 343 45677788888766 8899999999999875 45
Q ss_pred CH----HHHHHHHHHHHhcCCHHH
Q 048807 723 DY----ISMEILTEWLSEAGQTEK 742 (757)
Q Consensus 723 ~~----~~~~~l~~~~~~~g~~~~ 742 (757)
+. .....+...+...|+.++
T Consensus 227 ~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 227 DSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHhhh
Confidence 54 333344444444444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-08 Score=88.85 Aligned_cols=128 Identities=21% Similarity=0.251 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
.+..++..|...|++++|..+|+++.+.++. +...+..++..+...|++++|.++|+++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 5677888999999999999999999887644 78889999999999999999999999998875 445677888889999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
..|++++|.+.++++++.. +.+..++..++..+.+.|++++|.+.++++.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 9999999999999998864 5567888889999999999999999998875
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-08 Score=96.66 Aligned_cols=137 Identities=12% Similarity=0.066 Sum_probs=95.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcC
Q 048807 589 LISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNN 668 (757)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 668 (757)
+...|.+.|++++|+..|++.++.. +.+...+..+..+|...|++++|+..|+++.+. -+.+...|..++..|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 7788888888888888888888764 236778888888888888999998888888872 2345667888888876655
Q ss_pred C--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048807 669 Q--VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTE 732 (757)
Q Consensus 669 ~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 732 (757)
+ .+.+...++.... ..|....+.....++...|++++|+..|+++++ +.|+......+..
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 3 4455666665542 122223344456667778899999999999885 5788765554443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-07 Score=92.99 Aligned_cols=236 Identities=10% Similarity=0.061 Sum_probs=180.2
Q ss_pred HHHcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCccchHHHHHHHH----Hh
Q 048807 269 FCRKGK-TDEAWDVLHVLMKFDAPLEAASCNALLNALGREG--DFKRMNQLFTEMKENDIEPSVVTFGTIINRL----CK 341 (757)
Q Consensus 269 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~----~~ 341 (757)
..+.|. .++|++.++.++..++. +..+|+.-...+...| +++++++.++.++..+ +-+..+|+.-...+ ..
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 334444 46899999999998866 7889999999999999 9999999999999875 44666777766666 55
Q ss_pred c---CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHH--HHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 048807 342 L---YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQE--EALGLIEQMRLRLQKGCMPNAVTYNCLIN 416 (757)
Q Consensus 342 ~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (757)
. ++++++++.++++++.+ +.+..+|+.-.-.+.+.|.++ ++++.++++. ...+.|...|+.-..
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i----~~d~~N~sAW~~R~~ 188 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI----DTDLKNNSAWSHRFF 188 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH----HHCTTCHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH----HhCCCCHHHHHHHHH
Confidence 5 78999999999999876 778899999888888899988 9999999985 334678888988777
Q ss_pred HHHHcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 048807 417 GFCKSGN------IEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINS-AVEFFQEVTRKG--LCANAVTYTILITA 487 (757)
Q Consensus 417 ~~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~ 487 (757)
...+.+. ++++++.+++++...+. |...|+-+...+.+.|+..+ +..+..++.+.+ -..+...+..++..
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 7777776 88888888888877544 77888888888888777444 445555555432 12367778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 048807 488 FCNVNNFQEAIKWFDDMSRAGCSADSVVYFT 518 (757)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 518 (757)
|.+.|+.++|.++++.+.+.--+.....|+.
T Consensus 268 ~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 268 YTQQKKYNESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence 8888888888888888775321333344443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-08 Score=88.11 Aligned_cols=130 Identities=20% Similarity=0.224 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHH
Q 048807 296 SCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNT 375 (757)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (757)
.|..++..+...|++++|.++|+++.+.+ +.+...+..+...+...|++++|...++++.+.. +.+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-------CCchHHHHH
Confidence 45566666666677777777776666543 2344555666666666666666666666666543 344556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 376 LIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
++..+...|++++|.+.++++.. ..+.+...+..++..+.+.|++++|.+.++++.+.
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALE----LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 66666666666666666666531 12334555666666666666666666666665543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.4e-07 Score=91.09 Aligned_cols=221 Identities=10% Similarity=0.035 Sum_probs=166.7
Q ss_pred CChhHHHHHHHHhhccCCCc-chHHHHHHHHHhcC--ChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhcccc
Q 048807 162 SMYDYSLLVYNELDNNLRNT-HVRNVLIDVLLRCD--HDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSV 238 (757)
Q Consensus 162 g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 238 (757)
...++|+..++++....|+. .+||.-..++...| .++++++.++.++..+ |..++.
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n----Pk~y~a----------------- 105 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN----EKNYQI----------------- 105 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----TTCCHH-----------------
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC----cccHHH-----------------
Confidence 34467888888887765654 56899899998888 9999999999998864 444321
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh
Q 048807 239 TDEELVGLVSKFAEHGVFPNAVWLTQLITRF----CRK---GKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFK 311 (757)
Q Consensus 239 ~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 311 (757)
|+.-...+ .+. +++++++++++.+.+.++. +..+|+.-...+.+.|.++
T Consensus 106 -----------------------W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~ 161 (306)
T 3dra_A 106 -----------------------WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHN 161 (306)
T ss_dssp -----------------------HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTT
T ss_pred -----------------------HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccC
Confidence 11111111 122 6789999999999998766 8899999888888899888
Q ss_pred --HHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC------hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHc
Q 048807 312 --RMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR------ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKV 383 (757)
Q Consensus 312 --~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 383 (757)
++++.++++++.+ +-|...|+.....+...|+ ++++++.+++++..+ +.|..+|+-+...+.+.
T Consensus 162 ~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-------p~n~SaW~y~~~ll~~~ 233 (306)
T 3dra_A 162 DAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-------PQNPSTWNYLLGIHERF 233 (306)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-------CCCccHHHHHHHHHHhc
Confidence 9999999999886 4577788887777777776 889999999999875 77889999999889888
Q ss_pred CCHHH-HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 384 GKQEE-ALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 384 g~~~~-A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (757)
|+..+ +..+..++... ....+.+...+..++.+|.+.|+.++|.++++.+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~-~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 234 DRSITQLEEFSLQFVDL-EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp TCCGGGGHHHHHTTEEG-GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhc-cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88544 44566655210 111245778888888888888888888888888876
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.8e-08 Score=91.24 Aligned_cols=173 Identities=13% Similarity=0.055 Sum_probs=107.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 048807 532 ASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSG----NFSAARRVLK 607 (757)
Q Consensus 532 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 607 (757)
|...|++..+.| +...+..+...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555543 55556666666666666666666666666654 45555556666655 4 6667777776
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCC---HHHHHHHHHHHHh----cCCHHHHHHH
Q 048807 608 KMVKEGLVPTVVTYGALIHAFCV----NGHVDEAMKIFKELSSSSNVSPN---TVIYNILIDSLCK----NNQVELALSL 676 (757)
Q Consensus 608 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~ 676 (757)
+..+.| +...+..|...|.. .+++++|+.+|++..+ .+ +. ...+..|...|.. .+++++|+..
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-ST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 666643 45556666666655 6677777777776665 22 21 4566667777766 6677777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHcC
Q 048807 677 MEEMKVKEVRPNTNTYNAMFKGLRQK-N-----MLDKAFKLMDRMIEHA 719 (757)
Q Consensus 677 ~~~m~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g 719 (757)
|++..+. ..+...+..|...|... | +.++|+++|++..+.|
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7777664 23444566666666543 2 6777777777777665
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.96 E-value=4e-09 Score=119.17 Aligned_cols=153 Identities=10% Similarity=-0.068 Sum_probs=72.9
Q ss_pred HHcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 270 CRKGKTDEAWDVLHVLM--------KFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 270 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
...|++++|++.++++. +..+. +...|..+...|.+.|++++|.+.|+++++.+ +.+...|..+...+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 34455555555555554 32222 34445555555555555555555555555432 2233444445555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc
Q 048807 342 LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS 421 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (757)
.|++++|++.|+++++.+ +.+...|..+...|.+.|++++ ++.|++.. .-.+.+...|..+..++.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al----~~~P~~~~a~~~lg~~~~~~ 547 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-------PGELAPKLALAATAELAGNTDE-HKFYQTVW----STNDGVISAAFGLARARSAE 547 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHH----HHCTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCChHH-HHHHHHHH----HhCCchHHHHHHHHHHHHHc
Confidence 555555555555555432 3334445555555555555555 55554442 11233444455555555555
Q ss_pred CCHHHHHHHHHHHHh
Q 048807 422 GNIEKGLELFHLMKQ 436 (757)
Q Consensus 422 g~~~~A~~~~~~m~~ 436 (757)
|++++|++.|++..+
T Consensus 548 g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 548 GDRVGAVRTLDEVPP 562 (681)
T ss_dssp TCHHHHHHHHHTSCT
T ss_pred CCHHHHHHHHHhhcc
Confidence 555555555554444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.7e-08 Score=92.19 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----ChhHHHHHHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREG----DFKRMNQLFTEMKE 322 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~ 322 (757)
++..+..|...|...+++++|++.|++..+.| +..++..|...|.. + ++++|.+.|++..+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444444432 33344444444333 3 34444444444433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-09 Score=96.46 Aligned_cols=144 Identities=8% Similarity=-0.015 Sum_probs=76.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCCh
Q 048807 266 ITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRA 345 (757)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 345 (757)
..++...|++++|+..++......+. +...+..+...|.+.|++++|.+.|++.++.. +.+..+|..+...|.+.|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 34444556666666666665544322 33445555666666666666666666666553 33455566666666666666
Q ss_pred hHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHH-HHHHHHhhcCCCCCCHHHHHHHHHHHHHcC
Q 048807 346 DEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGL-IEQMRLRLQKGCMPNAVTYNCLINGFCKSG 422 (757)
Q Consensus 346 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (757)
++|+..|+++++.+ +.+..+|..+...|.+.|++++|.+. +++.. .-.|.+..+|......+...|
T Consensus 82 ~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al----~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELN-------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAA----KLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH----HHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----HhCcCCHHHHHHHHHHHHHhC
Confidence 66666666666543 34455666666666666665544433 34432 112334455555444444444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.93 E-value=8.2e-08 Score=92.14 Aligned_cols=186 Identities=10% Similarity=-0.026 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccc----hH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE--AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVV----TF 332 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~ 332 (757)
...+..++..+.+.|++++|+..|+++.+..+... ...+..++.+|.+.|++++|...|+++++.. |+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 44566678889999999999999999998755422 4678889999999999999999999999864 4332 34
Q ss_pred HHHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 048807 333 GTIINRLCK------------------LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIE 394 (757)
Q Consensus 333 ~~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 394 (757)
..+..++.+ .|++++|+..|+++++.. |.+..++....... .+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~~~l~----------~~~~ 144 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDATKRLV----------FLKD 144 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHHHHHH----------HHHH
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHHHHHH----------HHHH
Confidence 445555543 578999999999999864 33343433221110 0111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 395 QMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN--VVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
.+ ......+...|.+.|++++|+..|+++++...... ...+..+..++.+.|+.++|.+.++.+...
T Consensus 145 ~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 145 RL-----------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HH-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HH-----------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 11 11223466778888888888888888887632111 245777888888888888888888888776
Q ss_pred CC
Q 048807 473 GL 474 (757)
Q Consensus 473 ~~ 474 (757)
++
T Consensus 214 ~~ 215 (225)
T 2yhc_A 214 SS 215 (225)
T ss_dssp CS
T ss_pred CC
Confidence 43
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-08 Score=101.12 Aligned_cols=168 Identities=12% Similarity=0.035 Sum_probs=125.8
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchH-HH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTF-GT 334 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ 334 (757)
+.+...+..+...+.+.|++++|+..|+++.+..+. +...+..+...+.+.|++++|...++++.... |+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 556667778888888999999999999998887755 77888888899999999999999998887763 443322 22
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 335 IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 335 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
....+.+.++.++|++.+++.++.. +.+...+..+...|...|++++|++.|.++... .....+...+..+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l 261 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-------PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTF 261 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHH
Confidence 2334567778888888888888764 667788888888888888888888888887522 1111225677888
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 048807 415 INGFCKSGNIEKGLELFHLMK 435 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~ 435 (757)
+..+...|+.++|...+++..
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHH
Confidence 888888888888877777654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-08 Score=113.90 Aligned_cols=174 Identities=11% Similarity=-0.004 Sum_probs=142.8
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHH
Q 048807 340 CKLYRADEALEVFEKMI--------AGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTY 411 (757)
Q Consensus 340 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 411 (757)
...|++++|++.+++++ +.. +.+...+..+...|.+.|++++|++.|+++.. ..+.+...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~ 470 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-------SESVELPLMEVRALLDLGDVAKATRKLDDLAE----RVGWRWRLV 470 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHCCCHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc----cCcchHHHH
Confidence 67899999999999998 443 55678899999999999999999999999852 235678899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 048807 412 NCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNV 491 (757)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 491 (757)
..+..+|.+.|++++|++.|++..+.... +...+..+...+.+.|++++ .+.|+++++.... +...|..+..+|.+.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~ 547 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAE 547 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHc
Confidence 99999999999999999999999987433 67788999999999999999 9999999887544 777888999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 048807 492 NNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGR 528 (757)
Q Consensus 492 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 528 (757)
|++++|++.|++..+.+ +.+...+..+..++...++
T Consensus 548 g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 548 GDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred CCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99999999999888763 3345667777777665554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.7e-08 Score=98.87 Aligned_cols=159 Identities=11% Similarity=-0.001 Sum_probs=70.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHH
Q 048807 522 GLCQAGRMNDASLVVSKLKEAGF----RP-DIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGM---TPN--SVTYNTLIS 591 (757)
Q Consensus 522 ~~~~~g~~~~A~~~~~~~~~~g~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~~~~li~ 591 (757)
.|...|++++|...|.+..+... .+ -..+|+.+...|.+.|++++|...|++..+... .+. ..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666655443210 00 022455555555555666666665555443210 011 124444455
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----HHHHHHHHH
Q 048807 592 FLSKSGNFSAARRVLKKMVKEGLVP-T----VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN----TVIYNILID 662 (757)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~ 662 (757)
.|.. |++++|+..|++.++..... + ..++..+...|...|++++|+..|++..+...-.++ ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 5544 55555555555544321000 0 233444445555555555555555544431000011 113334444
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 048807 663 SLCKNNQVELALSLMEEMK 681 (757)
Q Consensus 663 ~~~~~g~~~~A~~~~~~m~ 681 (757)
++...|++++|...|++..
T Consensus 204 ~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 4444455555555555544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=9.5e-09 Score=91.48 Aligned_cols=145 Identities=7% Similarity=-0.042 Sum_probs=95.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLI 415 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 415 (757)
...+...|++++|++.+++..... +.+...+..+...|.+.|++++|++.|++... -.+.+..+|..+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~----~~p~~~~a~~~lg 72 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN----VQERDPKAHRFLG 72 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHH
Confidence 344555677777777777776542 33455666777778888888888888877742 2355677777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048807 416 NGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEF-FQEVTRKGLCANAVTYTILITAFCNVNN 493 (757)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~ 493 (757)
.+|.+.|++++|+..|++..+.... +..++..+...|.+.|++++|.+. ++++++..+. ++.+|......+...|+
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 73 LLYELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred HHHHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 8888888888888888777775322 566777777777777777665544 4666665433 56666666666555553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.5e-08 Score=91.56 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH-HH
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR-LC 340 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~ 340 (757)
+..+...+.+.|++++|+..|+++.+.++. +...+..+...+.+.|++++|...|++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 444566777788888888888877766544 67777778888888888888888887776653 233222221111 11
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGC-MPNAVTYNCLINGFC 419 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~ 419 (757)
..+...+|+..+++.++.. +.+...+..+...+...|++++|...|+++. .... ..+...+..+...+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l---~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-------PDNFELACELAVQYNQVGRDEEALELLWNIL---KVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTCTTTTTTHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHH---HhCcccChHHHHHHHHHHHH
Confidence 2223334666666666643 4456666667777777777777777776663 1111 112445666666666
Q ss_pred HcCCHHHHHHHHHHHH
Q 048807 420 KSGNIEKGLELFHLMK 435 (757)
Q Consensus 420 ~~g~~~~A~~~~~~m~ 435 (757)
..|+.++|...|++.+
T Consensus 156 ~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 156 ALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHCSSCHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHH
Confidence 6666666666666544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.5e-08 Score=98.42 Aligned_cols=207 Identities=11% Similarity=0.061 Sum_probs=125.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHH
Q 048807 272 KGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEV 351 (757)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 351 (757)
.|++++|.+++++..+.... . .+...+++++|...|.++ +..|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 46777888888877654221 1 011147788888777765 3456778888888888
Q ss_pred HHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 048807 352 FEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP--NAVTYNCLINGFCKSGNIEKGLE 429 (757)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~ 429 (757)
|.++++...... ....-..+|+.+...|.+.|++++|+..|++..........+ -..+++.+...|.. |++++|++
T Consensus 59 ~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 59 YLQEAEAHANNR-SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 888765320000 001114567788888888888888888888764321111111 13566777777777 88888888
Q ss_pred HHHHHHhCCCCC-C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 048807 430 LFHLMKQEGVTP-N----VVTLNTLVDGMCRHGRINSAVEFFQEVTRKG----LCAN-AVTYTILITAFCNVNNFQEAIK 499 (757)
Q Consensus 430 ~~~~m~~~g~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~li~~~~~~g~~~~A~~ 499 (757)
.|++..+..... + ..++..+...|.+.|++++|+..|+++++.. ..+. ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 887766531100 1 3456666777777777777777777666531 1111 1244455555666677777777
Q ss_pred HHHHHH
Q 048807 500 WFDDMS 505 (757)
Q Consensus 500 ~~~~m~ 505 (757)
.|++.+
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 776665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.9e-07 Score=87.33 Aligned_cols=186 Identities=10% Similarity=0.061 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CH-HHHH
Q 048807 547 DIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMT-P-NSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVP-TV-VTYG 622 (757)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~-~~~~ 622 (757)
+...+..+...+.+.|++++|...|+++.+.... + ....+..++.+|.+.|++++|+..|+++++..... .. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666777788889999999999988876311 1 13567778888888999999999999888753221 11 2444
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 048807 623 ALIHAFCV------------------NGHVDEAMKIFKELSSSSNVSPNT-VIYNILIDSLCKNNQVELALSLMEEMKVK 683 (757)
Q Consensus 623 ~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 683 (757)
.+..++.. .|++++|...|+++.+.. |+. ..+..+.... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~----------~~~~~~--- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRLV----------FLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHH----------HHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHH----------HHHHHH---
Confidence 45555544 345555555555555421 211 1111100000 000000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHhhchhccC
Q 048807 684 EVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY----ISMEILTEWLSEAGQTEKLKKFVQGYAVSAA 755 (757)
Q Consensus 684 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 755 (757)
......++..+.+.|++++|+..|+++++. .|+. ..+..++.++.+.|+.++|.+.++++...++
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 001134566777888888888888888864 3432 4677788888888888888888887654443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.9e-08 Score=109.07 Aligned_cols=153 Identities=11% Similarity=-0.050 Sum_probs=82.1
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHH
Q 048807 273 GKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVF 352 (757)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 352 (757)
|++++|++.|+++.+..+. +...|..+...|.+.|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5566666666666655433 55666666666666666666666666666553 234455666666666666666666666
Q ss_pred HHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc---CCHHHHHH
Q 048807 353 EKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS---GNIEKGLE 429 (757)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~ 429 (757)
+++++.. +.+...+..+...|.+.|++++|.+.+++... ..+.+...+..+...+... |+.++|.+
T Consensus 81 ~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 81 QQASDAA-------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ----LLPEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 6666543 34455666666666666666666666666531 1234455666666666666 66666666
Q ss_pred HHHHHHhCC
Q 048807 430 LFHLMKQEG 438 (757)
Q Consensus 430 ~~~~m~~~g 438 (757)
.+++..+.+
T Consensus 150 ~~~~al~~~ 158 (568)
T 2vsy_A 150 QVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhcC
Confidence 666666543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.7e-08 Score=90.41 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=26.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 334 TIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 334 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
.+...+.+.|++++|+..|+++++.+ +.+...+..+...+.+.|++++|...+++.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-------QSRGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 33444444555555555555444432 334444555555555555555555555443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=5.6e-08 Score=97.17 Aligned_cols=167 Identities=14% Similarity=0.058 Sum_probs=127.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHh
Q 048807 292 LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVI 371 (757)
Q Consensus 292 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 371 (757)
.+...+..+...+.+.|++++|...|++.++.. +.+...+..+...+.+.|++++|...++++... .|+..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--------~p~~~ 185 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--------DQDTR 185 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--------GCSHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--------hcchH
Confidence 356677788888899999999999999998874 445677888888999999999999999988764 34443
Q ss_pred HH-HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 048807 372 IF-NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTP-NVVTLNTL 449 (757)
Q Consensus 372 ~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l 449 (757)
.. ......+.+.++.++|.+.+++.. ...+.+...+..+...+...|++++|++.|.++.+..... +...+..+
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al----~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQV----AENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHH----hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 33 333334667778888888888774 2346678888888899999999999999998888864221 25678888
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 048807 450 VDGMCRHGRINSAVEFFQEVTR 471 (757)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~~~~ 471 (757)
+..+...|+.++|...|++.+.
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHHH
Confidence 8888888888888888777653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-07 Score=104.91 Aligned_cols=154 Identities=8% Similarity=-0.042 Sum_probs=118.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc
Q 048807 342 LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS 421 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (757)
.|++++|++.++++++.. +.+...|..+...|.+.|++++|.+.+++.. ...+.+...|..+...|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-------PQDFVAWLMLADAELGMGDTTAGEMAVQRGL----ALHPGHPEAVARLGRVRWTQ 70 (568)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----TTSTTCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHC
Confidence 478899999999988764 5568899999999999999999999999984 34466788999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHH
Q 048807 422 GNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNV---NNFQEAI 498 (757)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~ 498 (757)
|++++|.+.+++..+... .+...+..+...+.+.|++++|.+.++++.+.... +...+..+...+... |+.++|.
T Consensus 71 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 71 QRHAEAAVLLQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHH
Confidence 999999999999998743 36788999999999999999999999999887543 678888999999999 9999999
Q ss_pred HHHHHHHHcC
Q 048807 499 KWFDDMSRAG 508 (757)
Q Consensus 499 ~~~~~m~~~~ 508 (757)
+.+++..+.+
T Consensus 149 ~~~~~al~~~ 158 (568)
T 2vsy_A 149 AQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcC
Confidence 9999998875
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-07 Score=80.33 Aligned_cols=111 Identities=13% Similarity=0.034 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..+...|.+.|++++|++.|+++++.++. +..+|..+..+|.+.|++++|++.|++.++.+ +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 346777899999999999999999999998765 89999999999999999999999999999875 4567889999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLID 378 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 378 (757)
+...|++++|++.|+++++.+ |.+..++..|..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~-------P~~~~a~~~l~~ 123 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD-------PSNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-------cCCHHHHHHHHH
Confidence 999999999999999999865 556666665544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.9e-06 Score=85.14 Aligned_cols=224 Identities=11% Similarity=0.058 Sum_probs=158.8
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhc-C-Ch
Q 048807 269 FCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREG-DFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKL-Y-RA 345 (757)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~ 345 (757)
..+.+..++|+++++.++..++. +..+|+.-...+...| .++++++.++.++... +-+..+|+.-...+.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 33445567899999999998866 7889999888888888 5999999999999875 45677888887777776 7 89
Q ss_pred hHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 048807 346 DEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQE--------EALGLIEQMRLRLQKGCMPNAVTYNCLING 417 (757)
Q Consensus 346 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (757)
+++++.++++++.+ +.|..+|+--.-.+.+.|.++ ++++.++++. ...+.|..+|+.....
T Consensus 142 ~~EL~~~~k~L~~d-------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I----~~dp~N~SAW~~R~~l 210 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEML----RVDGRNNSAWGWRWYL 210 (349)
T ss_dssp HHHHHHHHHHTSSC-------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH----HHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH----HhCCCCHHHHHHHHHH
Confidence 99999999999875 678888888777777666666 8888888874 2346688888888888
Q ss_pred HHHcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHH
Q 048807 418 FCKSGN-------IEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRI--------------------NSAVEFFQEVT 470 (757)
Q Consensus 418 ~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~ 470 (757)
+.+.+. ++++++.++++...... |...|+-+-..+.+.|+. ....+...++.
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMP 289 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHH
Confidence 777775 67888888888776433 677777766666665553 11111111111
Q ss_pred HCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048807 471 RKG-----LCANAVTYTILITAFCNVNNFQEAIKWFDDMSR 506 (757)
Q Consensus 471 ~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (757)
..+ -.+.......|++.|...|+.++|.++++.+.+
T Consensus 290 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 290 SDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp C-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 111 023555566666666666666666666666553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=6.4e-07 Score=84.84 Aligned_cols=127 Identities=13% Similarity=0.034 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 048807 551 YNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCV 630 (757)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 630 (757)
+..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|+..+++.++.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4445555556666666666665543 3455555556666666666666666666655542 2244555555555666
Q ss_pred cCCHHHHHHHHHHhhhcCCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 631 NGHVDEAMKIFKELSSSSNVSP--------------NTVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 631 ~g~~~~A~~~~~~~~~~~~~~p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
.|++++|...|++..+...-.+ ....+..++.+|.+.|++++|...|++..+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666666655555111000 013455555555555555555555555554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.3e-07 Score=88.92 Aligned_cols=187 Identities=7% Similarity=-0.075 Sum_probs=117.8
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHCCCCCcc--------------
Q 048807 271 RKGKTDEAWDVLHVLMKFDAPLEAASCNAL-------LNALGREGDFKRMNQLFTEMKENDIEPSV-------------- 329 (757)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------------- 329 (757)
..++...|.+.|.++.+.++. ....|+.+ ...+.+.++..+++..+..-++. .|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 578999999999999988765 78888888 56666666667776666665542 2221
Q ss_pred --------chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 048807 330 --------VTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQ 401 (757)
Q Consensus 330 --------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 401 (757)
..+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--------p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~---- 162 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--------SEHLVAWMKAVVYGAAERWTDVIDQVKSAG---- 162 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--------CHHHHHHHHHHHHHHTTCHHHHHHHHTTGG----
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHcCCHHHHHHHHHHhh----
Confidence 012234456667777777777777766533 332255666667777777777777776542
Q ss_pred CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 402 KGCMPN--AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN--VVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 402 ~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
....|. ...+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 163 ~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 163 KWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 111111 23566667777777777777777777664322133 234555566666777777777777777665
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4.8e-07 Score=79.99 Aligned_cols=101 Identities=16% Similarity=0.081 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTII 336 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 336 (757)
.+...+..+...+.+.|++++|+..|+++.+.+|. +...|..+..+|.+.|++++|...|++.++.. +.+...|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 35667888999999999999999999999998765 88999999999999999999999999999875 45678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 048807 337 NRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
.+|.+.|++++|+..|+++++..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999853
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-05 Score=81.13 Aligned_cols=170 Identities=12% Similarity=0.051 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc-C
Q 048807 345 ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVG-KQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS-G 422 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 422 (757)
.++|++++++++..+ +.+..+|+.-...+...| .+++++++++.+ ....+.+..+|+.-...+.+. +
T Consensus 70 se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~----L~~nPKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 70 SERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEF----AVQNLKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp SHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH----HHTTCCCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHH----HHhCCCcHHHHHHHHHHHHHhcC
Confidence 345556666655543 344455555555555555 356666666555 223344555555555555444 4
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 048807 423 -NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRIN--------SAVEFFQEVTRKGLCANAVTYTILITAFCNVNN 493 (757)
Q Consensus 423 -~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 493 (757)
+.++++++++++.+...+ |..+|+--.-.+.+.|.++ ++++.++++++..+. |..+|+-....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 555666666666554322 4445544444444434443 666666666665443 66666666655555554
Q ss_pred -------HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 048807 494 -------FQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGR 528 (757)
Q Consensus 494 -------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 528 (757)
++++++.+++++... +.|...|+-+-..+.+.|+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 566666666666553 4566666665555555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-06 Score=83.37 Aligned_cols=92 Identities=12% Similarity=0.023 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
+..+...+.+.|++++|++.|+++. .++..+|..+...|.+.|++++|.+.|++.++.. +.+...+..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555555555555555555543 2345555555555555555555555555555443 2234445555555555
Q ss_pred cCChhHHHHHHHHHHhC
Q 048807 342 LYRADEALEVFEKMIAG 358 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~ 358 (757)
.|++++|++.|+++++.
T Consensus 84 ~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHh
Confidence 55555555555555543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-06 Score=86.84 Aligned_cols=167 Identities=11% Similarity=0.111 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--H
Q 048807 550 CYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNS------VTYNTLISFLSKSGNFSAARRVLKKMVKEGL---VPT--V 618 (757)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~ 618 (757)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|+..+++.++... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556667777777777777776655311 21 1233455566777888888888888775321 112 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh---cCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-
Q 048807 619 VTYGALIHAFCVNGHVDEAMKIFKELSS---SSNVSP--NTVIYNILIDSLCKNNQVELALSLMEEMKVK----EVRPN- 688 (757)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~- 688 (757)
.+++.+...|...|++++|...+++..+ ..+..+ ...++..++..|.+.|++++|+..+++..+. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4778888888888888888888888762 111111 1247888888899999999999999887742 11111
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 048807 689 TNTYNAMFKGLRQKNMLDKA-FKLMDRMIE 717 (757)
Q Consensus 689 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 717 (757)
..+|..++.+|.+.|++++| ...+++++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788888899999999999 777887754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.65 E-value=6.6e-08 Score=96.28 Aligned_cols=99 Identities=14% Similarity=-0.063 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+...+..+...+.+.|++++|+..|+++++..+. +...|..+...|.+.|++++|.+.+++.++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4455666677777777777777777777766543 66677777777777777777777777776653 334556666667
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 048807 338 RLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~ 358 (757)
+|...|++++|+..|+++++.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777776653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-06 Score=86.47 Aligned_cols=166 Identities=11% Similarity=0.030 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC--CCCC--H
Q 048807 584 VTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTV-----VTYGALIHAFCVNGHVDEAMKIFKELSSSSN--VSPN--T 654 (757)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~p~--~ 654 (757)
..+...+..+...|++++|.+.+.+.++....... ..+..+...+...|++++|+..+++..+... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 45556777889999999999999998875322111 2244466667888999999999999875211 1122 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-
Q 048807 655 VIYNILIDSLCKNNQVELALSLMEEMKVK-EVRPN-----TNTYNAMFKGLRQKNMLDKAFKLMDRMIEH----ACHPD- 723 (757)
Q Consensus 655 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~- 723 (757)
.+|+.++..|...|++++|+..|+++.+. ...|+ ..++..++.+|.+.|++++|++++++.++. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 48899999999999999999999998731 01222 257889999999999999999999998753 11111
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHhh
Q 048807 724 YISMEILTEWLSEAGQTEKL-KKFVQG 749 (757)
Q Consensus 724 ~~~~~~l~~~~~~~g~~~~A-~~~~~~ 749 (757)
..+|..++..+...|+.++| ..++++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 47888999999999999999 776665
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=8.5e-06 Score=81.51 Aligned_cols=165 Identities=12% Similarity=0.106 Sum_probs=114.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 048807 553 HLISGFCKKKMLDKAYEVLQEMEDIGM-TPNS----VTYNTLISFLSKSGNFSAARRVLKKMVKEGLV-PT----VVTYG 622 (757)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~ 622 (757)
..+..+...|++++|..++++..+... .++. ..+..+...+...|++++|+..++++++.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345667788888888888888776421 1121 12334666666777888888888888874222 22 33678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhc---C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHH
Q 048807 623 ALIHAFCVNGHVDEAMKIFKELSSS---S-NVSPN-TVIYNILIDSLCKNNQVELALSLMEEMKV----KEVRPN-TNTY 692 (757)
Q Consensus 623 ~li~~~~~~g~~~~A~~~~~~~~~~---~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~ 692 (757)
.+...|...|++++|...++++.+. . +..+. ..+|..++..|.+.|++++|+..+++.++ .+..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888888888988888888887631 1 11122 23678888889999999999998888774 222222 5678
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHH
Q 048807 693 NAMFKGLRQKN-MLDKAFKLMDRMIE 717 (757)
Q Consensus 693 ~~l~~~~~~~g-~~~~A~~~~~~~~~ 717 (757)
..++.++.+.| .+++|.+.++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888888888 46899998888864
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=5.4e-06 Score=82.96 Aligned_cols=173 Identities=12% Similarity=0.038 Sum_probs=122.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCcc-----chHH
Q 048807 264 QLITRFCRKGKTDEAWDVLHVLMKFDAP-LE----AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSV-----VTFG 333 (757)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~ 333 (757)
..+..+.+.|++++|...+++..+.... ++ ...+..+...+...|++++|...|+++.+.....+. .+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3477889999999999999999885432 12 113345777778888999999999999985322222 2688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc-CCCCCC-HHHH
Q 048807 334 TIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQ-KGCMPN-AVTY 411 (757)
Q Consensus 334 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~-~~~~ 411 (757)
.+...|...|++++|+..|+++++.-.......+....++..+...|.+.|++++|.+.+++...... .+..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999999998421000000122244788899999999999999999887653211 111222 5678
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHh
Q 048807 412 NCLINGFCKSG-NIEKGLELFHLMKQ 436 (757)
Q Consensus 412 ~~li~~~~~~g-~~~~A~~~~~~m~~ 436 (757)
..+..+|.+.| ++++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888888888 46888888877654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.63 E-value=7.1e-07 Score=80.49 Aligned_cols=130 Identities=15% Similarity=0.024 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..+...+...|++++|...|++..+..+. +..+|..+...+...|++++|.+.|++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 346777888999999999999999999987654 78899999999999999999999999999875 4467788889999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNT--LIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~ 397 (757)
+...|++++|.+.++++++.. +.+...+.. ++..+.+.|++++|.+.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999864 445555533 4444778899999998888764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.7e-07 Score=77.58 Aligned_cols=121 Identities=10% Similarity=0.004 Sum_probs=104.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
+.+...+..+...+.+.|++++|...|+++.+..+. +..+|..+...|...|++++|.+.|++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 567778899999999999999999999999988654 78999999999999999999999999999874 4467788889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCC
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK 385 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 385 (757)
...+.+.|++++|++.|++.++.. +.+...+..+...+.+.|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-------SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-------GGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHhcC
Confidence 999999999999999999998864 4456777777777776653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.62 E-value=9.1e-07 Score=75.11 Aligned_cols=116 Identities=21% Similarity=0.211 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..++..|.+.|++++|.+.|+++.+..+. +..++..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 567888999999999999999999999987643 78899999999999999999999999999874 4567788899999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHc
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKV 383 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 383 (757)
+...|++++|...++++++.. +.+...+..+...+.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-------PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHhc
Confidence 999999999999999998864 45666777776666544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-06 Score=84.72 Aligned_cols=206 Identities=10% Similarity=-0.021 Sum_probs=145.4
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCccchHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCC---C--c-cc----
Q 048807 303 ALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI-------INRLCKLYRADEALEVFEKMIAGKET---A--E-IS---- 365 (757)
Q Consensus 303 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~---~--~-~~---- 365 (757)
++ +.++...|.+.|.++.+.+ +-....|..+ ...+.+.++..+++..+...++.... . . .+
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 44 5799999999999999975 3456778888 56777777777887777776652100 0 0 00
Q ss_pred ----ccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 048807 366 ----VEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTP 441 (757)
Q Consensus 366 ----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 441 (757)
+..-...+..+...+...|++++|.++|+.+ ..+. |+......+...+.+.+++++|+..|+...+.. .|
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~----~~~~-p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~ 167 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAA----PVAG-SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DK 167 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSS----CCTT-CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHH----HhcC-CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cc
Confidence 0011234556788899999999999999987 3333 333377777778999999999999998665431 11
Q ss_pred C--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 048807 442 N--VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCAN--AVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYF 517 (757)
Q Consensus 442 ~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 517 (757)
. ...+..+..++.+.|++++|+..|++.......|. ......+..++.+.|+.++|..+|+++.... |+...+.
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~ 245 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHH
Confidence 1 23677788889999999999999999885433243 3356667788889999999999999988874 4443333
Q ss_pred H
Q 048807 518 T 518 (757)
Q Consensus 518 ~ 518 (757)
.
T Consensus 246 a 246 (282)
T 4f3v_A 246 A 246 (282)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.4e-07 Score=83.19 Aligned_cols=166 Identities=9% Similarity=-0.075 Sum_probs=113.4
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCC-CccchHHHHHHHHHhcCC
Q 048807 270 CRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN----DIE-PSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~ 344 (757)
...|++++|.+.++.+.. .+.....++..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467999999996665544 33346788999999999999999999999998762 212 234567888889999999
Q ss_pred hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHHcC
Q 048807 345 ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN--AVTYNCLINGFCKSG 422 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g 422 (757)
+++|.+.+++.++..............++..+...+...|++++|...+++..........+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 999999999987641000000002245678888899999999999999988753211111111 234566777777788
Q ss_pred CHHHHHHHHHHHHh
Q 048807 423 NIEKGLELFHLMKQ 436 (757)
Q Consensus 423 ~~~~A~~~~~~m~~ 436 (757)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888777776654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=7.1e-07 Score=76.38 Aligned_cols=96 Identities=16% Similarity=0.114 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
...+......|.+.|++++|++.|++.++.+ +.+..+|..+..+|.+.|++++|+..|+++++.+ +.+..+|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~ 84 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-------SKFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-------hhhhHHH
Confidence 3456666666777777777777777766654 3355666666666677777777777777766654 4456666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
..+..+|...|++++|.+.|++..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666666777777776666653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-06 Score=79.01 Aligned_cols=130 Identities=12% Similarity=0.022 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
...|..+...+...|++++|...|++.++.. +.+..++..+...+...|++++|+..+++.++.. +.+..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~ 84 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------KKYIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHHHH
Confidence 3456666777777777777777777777653 3355666667777777777777777777777653 4456667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNC--LINGFCKSGNIEKGLELFHLMK 435 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~ 435 (757)
..+...+...|++++|...+++.... .+.+...+.. ++..+.+.|++++|++.+....
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVVKV----KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777777777776421 2334444433 3333556667777766666543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=9.3e-07 Score=75.79 Aligned_cols=120 Identities=13% Similarity=0.054 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+...+..++..+...|++++|.+.|+++.+..+. +...|..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 4567888899999999999999999999987654 78899999999999999999999999999874 445778888999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQ 386 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 386 (757)
.+...|++++|...++++++.. +.+...+..+...+.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-------PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999864 55778888888888887764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=4.1e-07 Score=90.50 Aligned_cols=99 Identities=8% Similarity=-0.069 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048807 407 NAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILIT 486 (757)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 486 (757)
+...+..+...+.+.|++++|++.|++..+... .+...|..+...|.+.|++++|...++++++.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 344555566666666666666666666665422 25556666666666666666666666666655332 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 048807 487 AFCNVNNFQEAIKWFDDMSRA 507 (757)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~ 507 (757)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666665543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-06 Score=74.16 Aligned_cols=96 Identities=21% Similarity=0.242 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
...|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|+..++++++.. +.+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CccHHHH
Confidence 4556666666666677777776666666543 2344555666666666666666666666666543 3455566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
..+...|...|++++|...++++.
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 666666666666666666666653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=6.7e-07 Score=79.04 Aligned_cols=121 Identities=9% Similarity=-0.052 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHH
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLC 340 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 340 (757)
+...+.+.+...+.+++++ +..+. +...+..+...+.+.|++++|...|++++..+ +.+...|..+..+|.
T Consensus 11 ~~~~l~~~~~~~~~l~~al-------~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~ 81 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDIN-------AIPDD-MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQ 81 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGC-------CSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHh-------CCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3455555555555555443 32222 56788899999999999999999999999875 457888999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
..|++++|+..|+++++.+ |.+...|..+..+|.+.|++++|...|++..
T Consensus 82 ~~g~~~~Ai~~~~~al~l~-------P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALG-------KNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHS-------SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999875 5678899999999999999999999999985
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=6.6e-07 Score=79.11 Aligned_cols=97 Identities=13% Similarity=-0.034 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..+...+.+.|++++|+..|+++.+.++. +...|..+..+|.+.|++++|.+.|++.+..+ +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 334444444555555555555555555444332 44445555555555555555555555554432 2233444444445
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 048807 339 LCKLYRADEALEVFEKMIA 357 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~ 357 (757)
|...|++++|++.|+++++
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-06 Score=89.23 Aligned_cols=131 Identities=13% Similarity=0.003 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE--------------AASCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
+...+..+...|.+.|++++|+..|+++++..+... ..+|..+..+|.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455788899999999999999999999999875532 589999999999999999999999999987
Q ss_pred CCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 048807 324 DIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEA-LGLIEQM 396 (757)
Q Consensus 324 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~ 396 (757)
. +.+...|..+..+|...|++++|+..|+++++.. +.+..++..+..++.+.|+.++| ...+..|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-------PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4567889999999999999999999999999875 56788899999999999999988 4456655
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=7.2e-05 Score=74.72 Aligned_cols=140 Identities=11% Similarity=0.050 Sum_probs=91.7
Q ss_pred HHHcCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 269 FCRKGKTD-EAWDVLHVLMKFDAPLEAASCNALLNALGREGD----------FKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 269 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
..+.|.+. +|++.++.++..+|. +..+|+.--..+...|. +++++.+++.++... +-+..+|+.-..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556654 788888888888765 67777766555544443 567777777777654 345666766666
Q ss_pred HHHhcCC--hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 338 RLCKLYR--ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK-QEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 338 ~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
.+.+.|+ +++++..++++++.+ +.|..+|+.-.-.+...|. ++++++.++++. ...+.|..+|+..
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I----~~~p~N~SAW~~R 185 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI----TRNFSNYSSWHYR 185 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH----HHCSCCHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH----HHCCCCHHHHHHH
Confidence 6666663 677777777777765 5667777776666666676 467777777764 2235566677666
Q ss_pred HHHHHHc
Q 048807 415 INGFCKS 421 (757)
Q Consensus 415 i~~~~~~ 421 (757)
...+.+.
T Consensus 186 ~~ll~~l 192 (331)
T 3dss_A 186 SCLLPQL 192 (331)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-06 Score=74.94 Aligned_cols=118 Identities=12% Similarity=0.014 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVII 372 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.++++++.. +.+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~ 86 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-------PTFIKG 86 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCchHH
Confidence 45677777777777777777777777777653 3355666667777777777777777777777653 445667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcC
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSG 422 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (757)
+..+...|.+.|++++|.+.|++.... .+.+...+..+...+.+.|
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDL----DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHhc
Confidence 777777777777777777777766421 2234455555555555444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-06 Score=81.64 Aligned_cols=62 Identities=11% Similarity=-0.075 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVKE-VRPN----TNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
.+..+...+...|++++|...+++..+.. -..+ ..++..+..++...|++++|.+.+++.++
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34445555555555555555555544210 0011 12234555555555666666655555543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.4e-07 Score=96.53 Aligned_cols=149 Identities=11% Similarity=-0.055 Sum_probs=96.1
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCcc----------------chHHHHH
Q 048807 273 GKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSV----------------VTFGTII 336 (757)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~~~~~li 336 (757)
+++++|++.++...+..+ .+...|..+...|.+.|++++|...|++.++.. |+. .+|..+.
T Consensus 127 ~~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHH
Confidence 444555554444333221 156788889999999999999999999998864 332 5666666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN 416 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (757)
.+|.+.|++++|+..++++++.. +.+..+|..+..+|...|++++|+..|++... -.+.+...+..+..
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELD-------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ----LYPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCCCHHHHHHHHH
Confidence 66677777777777777766653 44566666666677777777777777666632 12445566666666
Q ss_pred HHHHcCCHHHH-HHHHHHHH
Q 048807 417 GFCKSGNIEKG-LELFHLMK 435 (757)
Q Consensus 417 ~~~~~g~~~~A-~~~~~~m~ 435 (757)
++.+.|+.++| ..+++.|.
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666 33444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-06 Score=80.33 Aligned_cols=118 Identities=7% Similarity=0.091 Sum_probs=77.2
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH-HHhcCCh--hH
Q 048807 271 RKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR-LCKLYRA--DE 347 (757)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~~ 347 (757)
..|++++|+..+++..+..+. +...|..+...|...|++++|...|++..+.+ +.+...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 456777777777777666543 66777777777777777777777777776653 3345556666666 5567776 77
Q ss_pred HHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 348 ALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 348 A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
|+..++++++.+ +.+...+..+...|...|++++|...++++.
T Consensus 100 A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 100 TRAMIDKALALD-------SNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 777777777653 4456667777777777777777777777764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=5.2e-06 Score=70.94 Aligned_cols=118 Identities=11% Similarity=-0.014 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048807 618 VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFK 697 (757)
Q Consensus 618 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 697 (757)
...+..+...+...|++++|...+++..+. .+.+...+..++..+...|++++|...+++..... +.+...+..++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 344555556666666666666666666551 22345566666666666666667766666666532 234556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 048807 698 GLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQ 739 (757)
Q Consensus 698 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 739 (757)
++...|++++|.+.++++++.. +.+...+..+...+...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 6677777777777777766541 2244555566666655554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.9e-06 Score=72.51 Aligned_cols=98 Identities=14% Similarity=0.024 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..+...+.+.|++++|+..|++.++.++. +...|..+..+|.+.|++++|...|++.++.+ +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 446777889999999999999999999998755 78999999999999999999999999999875 4467788999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 048807 339 LCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~ 358 (757)
+...|++++|+..|+++++.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999999874
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=76.83 Aligned_cols=102 Identities=12% Similarity=0.042 Sum_probs=72.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 048807 281 VLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKE 360 (757)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 360 (757)
.|+++.+.++. +...+..+...+.+.|++++|...|++.+..+ +.+...|..+..+|...|++++|+..|+++++.+
T Consensus 9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 44555554422 55667777777788888888888888877764 4466677777777788888888888888877754
Q ss_pred CCcccccCCHhHHHHHHHHHHHcCCHHHHHH
Q 048807 361 TAEISVEPDVIIFNTLIDGLCKVGKQEEALG 391 (757)
Q Consensus 361 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 391 (757)
+.+..++..+..+|...|++++|.+
T Consensus 86 ------p~~~~~~~~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 86 ------IXEPRFPFHAAECLLQXGELAEAES 110 (148)
T ss_dssp ------TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------CCCchHHHHHHHHHHHcCCHHHHHH
Confidence 4566777777888888888777654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-06 Score=76.45 Aligned_cols=99 Identities=18% Similarity=-0.026 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
+...+..+...+.+.|++++|+..|+++.+.++. +...|..+..+|.+.|++++|...|++.+..+ +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 4456777888999999999999999999998765 88999999999999999999999999999875 456778888999
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 048807 338 RLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~ 358 (757)
+|...|++++|++.|+++++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999875
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=2.2e-07 Score=87.00 Aligned_cols=151 Identities=11% Similarity=-0.134 Sum_probs=80.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCcc---------------
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSV--------------- 329 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 329 (757)
.+......|++++|.+.++......+ .....+..+...+.+.|++++|.+.|++.++.. +.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ------------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHH
Confidence 33444455666666666553322111 135567778888888888888888888888753 1122
Q ss_pred -chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCH
Q 048807 330 -VTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNA 408 (757)
Q Consensus 330 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 408 (757)
..+..+..+|.+.|++++|+..++++++.. +.+..++..+..+|...|++++|.+.|++... ..+.+.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~ 156 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-------KNNVKALYKLGVANMYFGFLEEAKENLYKAAS----LNPNNL 156 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCcH
Confidence 455555566666666666666666666543 34555666666666666666666666666531 123345
Q ss_pred HHHHHHHHHHHHcCCHHHHH
Q 048807 409 VTYNCLINGFCKSGNIEKGL 428 (757)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~ 428 (757)
..+..+..++...++.+++.
T Consensus 157 ~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 157 DIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.2e-06 Score=72.41 Aligned_cols=98 Identities=12% Similarity=0.061 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCc----cchHH
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDI--EPS----VVTFG 333 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~ 333 (757)
..+..|...|.+.|++++|++.|+++++.++. +..+|+.+..+|.+.|++++|++.|++.++.+. .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 46777999999999999999999999998765 789999999999999999999999999987531 111 13577
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 048807 334 TIINRLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 334 ~li~~~~~~g~~~~A~~~~~~~~~~ 358 (757)
.+...+...|++++|++.|++.++.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7888889999999999999999874
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00013 Score=72.98 Aligned_cols=166 Identities=11% Similarity=0.091 Sum_probs=106.9
Q ss_pred HhcCChh-HHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhhcCCCCCCH
Q 048807 340 CKLYRAD-EALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGK----------QEEALGLIEQMRLRLQKGCMPNA 408 (757)
Q Consensus 340 ~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~ 408 (757)
.+.|.++ +|+.+++.++..+ |.+..+|+.--..+...+. +++++.+++.+. ...+.+.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L----~~~PKny 108 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL----RVNPKSY 108 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH----HHCTTCH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH----HhCCCCH
Confidence 3455544 7888888888765 5556667765555544433 567777777773 3346677
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048807 409 VTYNCLINGFCKSG--NIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGR-INSAVEFFQEVTRKGLCANAVTYTILI 485 (757)
Q Consensus 409 ~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li 485 (757)
.+|+.-...+.+.| .+++++++++++.+.... |..+|+.-.-.+...|. ++++++.+.++++..+. |..+|+...
T Consensus 109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~ 186 (331)
T 3dss_A 109 GTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRS 186 (331)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHH
T ss_pred HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 78877777777777 478888888888876543 67777776666677777 47788888887776544 677777665
Q ss_pred HHHHhc--------------CCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 048807 486 TAFCNV--------------NNFQEAIKWFDDMSRAGCSADSVVYFTL 519 (757)
Q Consensus 486 ~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~l 519 (757)
..+.+. +.++++++.+++.+... |.|..+|+-+
T Consensus 187 ~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~ 233 (331)
T 3dss_A 187 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYH 233 (331)
T ss_dssp HHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 555444 23555555555555443 3444444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=5.4e-06 Score=69.37 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
...+..++..+...|++++|.+.|+++.+..+. +...+..+...+.+.|++++|...+++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 456778889999999999999999999987654 78899999999999999999999999999875 4457788889999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDG 379 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 379 (757)
+...|++++|.+.+++.++.+ +.+...+..+...
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-------ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-------TTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-------CCCHHHHHHHHHh
Confidence 999999999999999999864 4455555555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-06 Score=79.05 Aligned_cols=122 Identities=7% Similarity=0.061 Sum_probs=83.5
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHH-HHHc
Q 048807 305 GREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDG-LCKV 383 (757)
Q Consensus 305 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~ 383 (757)
...|++++|...+++..+.. +.+...|..+...|...|++++|+..|+++++.. +.+...+..+... +...
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GENAELYAALATVLYYQA 92 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSCHHHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhc
Confidence 34577777887787777654 3455677777777778888888888888877653 4466677777777 6677
Q ss_pred CCH--HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048807 384 GKQ--EEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEG 438 (757)
Q Consensus 384 g~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (757)
|++ ++|...+++... ..+.+...+..+...|...|++++|.+.|+++.+..
T Consensus 93 ~~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALA----LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TTCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCcchHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777 888888777642 234456777777777778888888888887777753
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.6e-06 Score=71.38 Aligned_cols=106 Identities=12% Similarity=0.114 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHHH
Q 048807 619 VTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKE--VRPN----TNTY 692 (757)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~ 692 (757)
..+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.|++.++.. ..++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34555666667777777777777766661 22345566677777777777777777777766421 1111 1356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048807 693 NAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISME 728 (757)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 728 (757)
..++.++...|++++|++.|++.++. .||+.+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 66777777788888888888877763 56665443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=5.1e-06 Score=72.01 Aligned_cols=102 Identities=15% Similarity=-0.047 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTI 335 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 335 (757)
+.+...+..+...+.+.|++++|+..|+++.+.++. +...|..+...+...|++++|...|++.++.+ +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 456788999999999999999999999999988755 78999999999999999999999999999875 4467788999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 048807 336 INRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
...+...|++++|+..|+++++..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999999998753
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-06 Score=76.39 Aligned_cols=97 Identities=12% Similarity=-0.019 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhH
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVII 372 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
+...+..+...+.+.|++++|...|++.+..+ +.+...|..+..++.+.|++++|+..|+++++.+ +.+...
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 88 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-------INEPRF 88 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCcHH
Confidence 44566667777778888888888888877764 3456667777777788888888888888877764 456667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
+..+..+|...|++++|.+.|++..
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777778888888888888887764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.32 E-value=5e-06 Score=74.93 Aligned_cols=101 Identities=12% Similarity=0.046 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTII 336 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 336 (757)
.+...+..+...|.+.|++++|++.|+++++..+. +...|..+..+|.+.|++++|+..|++.++.+ +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35667888999999999999999999999998755 88999999999999999999999999999875 44678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 048807 337 NRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
..|...|++++|+..|+++++..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999998854
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=5.5e-06 Score=70.70 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
...|..+...+.+.|++++|...|++.++.. +.+...|..+..++.+.|++++|+..++++++.+ +.+..+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-------PNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHH
Confidence 3456666667777777777777777777654 3355666677777777777777777777777654 4456667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
..+..++...|++++|.+.|++..
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHH
Confidence 777777777777777777777664
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-05 Score=66.47 Aligned_cols=95 Identities=17% Similarity=-0.011 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
...+..++..+...|++++|.+.|++..... +.+...+..+...+...|++++|...++++++.. +.+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------PDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-------cccHHHH
Confidence 3455556666666666666666666666543 2344555555666666666666666666666543 3345556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
..+...+...|++++|.+.+++.
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666666666666666655
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=7.6e-06 Score=76.39 Aligned_cols=129 Identities=14% Similarity=0.032 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE---------------AASCNALLNALGREGDFKRMNQLFTEMKEND 324 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 324 (757)
..+..+...+.+.|++++|++.|+++.+..+... ..+|..+..+|.+.|++++|...+++.++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3566788899999999999999999998754422 2789999999999999999999999999874
Q ss_pred CCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 048807 325 IEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEAL-GLIEQM 396 (757)
Q Consensus 325 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~ 396 (757)
+.+...+..+..+|...|++++|++.|+++++.. +.+..++..+..++...++.+++. ..+..+
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-------PNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999999864 557788888888888877777666 444444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.27 E-value=5.4e-06 Score=70.94 Aligned_cols=113 Identities=14% Similarity=0.130 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCc----cchH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDI--EPS----VVTF 332 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~ 332 (757)
...+..+...+...|++++|...|+++.+..+. +...+..+...|...|++++|...++++..... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 346778889999999999999999999987644 788999999999999999999999999987631 111 6678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHH
Q 048807 333 GTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGL 380 (757)
Q Consensus 333 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 380 (757)
..+...+...|++++|.+.|+++++. .|+...+..+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--------HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--------CCCHHHHHHHHHHH
Confidence 88889999999999999999999885 35666665555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-05 Score=69.86 Aligned_cols=115 Identities=15% Similarity=0.085 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE---AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTF 332 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 332 (757)
+.+...+..+...+.+.|++++|.+.|++..+..+. + ...|..+...|...|++++|.+.+++..+.. +.+...+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 457788899999999999999999999999987643 2 6889999999999999999999999998874 3456778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHH
Q 048807 333 GTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDG 379 (757)
Q Consensus 333 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 379 (757)
..+...+...|++++|...|++.++.. +.+...+..+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-------PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHH
Confidence 888999999999999999999998864 4455555544443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.7e-06 Score=68.48 Aligned_cols=100 Identities=12% Similarity=-0.019 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--ccchHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEP--SVVTFGTI 335 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l 335 (757)
+...+..+...+.+.|++++|...|+++.+..+. +..+|..+...+...|++++|.+.|++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 4456777888999999999999999999987654 78899999999999999999999999999874 33 56778889
Q ss_pred HHHHHhc-CChhHHHHHHHHHHhCC
Q 048807 336 INRLCKL-YRADEALEVFEKMIAGK 359 (757)
Q Consensus 336 i~~~~~~-g~~~~A~~~~~~~~~~~ 359 (757)
...+.+. |++++|++.+++++...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 9999999 99999999999998764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=6.7e-06 Score=69.61 Aligned_cols=96 Identities=7% Similarity=-0.020 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
+..+...+.+.|++++|+..|+++++..+. +...|..+..++.+.|++++|+..|++.++.+ +.+...+..+...+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 455778899999999999999999998765 89999999999999999999999999999875 4467788899999999
Q ss_pred cCChhHHHHHHHHHHhCC
Q 048807 342 LYRADEALEVFEKMIAGK 359 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~ 359 (757)
.|++++|+..++++++..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999998753
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-05 Score=69.00 Aligned_cols=111 Identities=10% Similarity=0.067 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHH
Q 048807 619 VTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEV--RPN----TNTY 692 (757)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~ 692 (757)
..+..+...+...|++++|...+++..+. .+.+...+..++..|...|++++|...++++..... .++ ..+|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34555666666667777777777666652 223455666667777777777777777777665310 112 5566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048807 693 NAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEW 733 (757)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 733 (757)
..++.++...|++++|.+.++++++. .|+...+..+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 67777777777777777777777764 4555555544443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.3e-05 Score=70.41 Aligned_cols=96 Identities=13% Similarity=0.003 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAF 628 (757)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 628 (757)
..+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344555555555556666665555555543 3345555555555555666666666665555542 12345555555555
Q ss_pred HhcCCHHHHHHHHHHhhh
Q 048807 629 CVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 629 ~~~g~~~~A~~~~~~~~~ 646 (757)
...|++++|...|++..+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 556666666665555554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=5.9e-05 Score=66.00 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 048807 617 TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN----TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTY 692 (757)
Q Consensus 617 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 692 (757)
+...+..+...+...|++++|...|++..+ ..|+ ...|..+...|.+.|++++|+..+++..... +.+...|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 455666666667777777777777777665 2344 4566777777777777777777777776642 2356667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 693 NAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 693 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
..+..++...|++++|.+.+++.++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777788887777777764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=6.6e-05 Score=79.68 Aligned_cols=198 Identities=11% Similarity=0.022 Sum_probs=114.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH----------------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC
Q 048807 485 ITAFCNVNNFQEAIKWFDDMSRAGCSADS----------------VVYFTLISGLCQAGRMNDASLVVSKLKEAGF-RPD 547 (757)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~ 547 (757)
...+.+.|++++|++.|.++++....... .++..++..|...|++++|.+.+..+.+.-. .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567788888888888888876422111 1356677777777777777777776554211 111
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC--
Q 048807 548 I----VCYNHLISGFCKKKMLDKAYEVLQEMEDI----GMTPN-SVTYNTLISFLSKSGNFSAARRVLKKMVKE--GL-- 614 (757)
Q Consensus 548 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~-- 614 (757)
. ...+.+...+...|++++|.+++++.... +..+. ..++..++..|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12233333444566777777777665431 11122 345666677777777777777777766542 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc---CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048807 615 VP-TVVTYGALIHAFCVNGHVDEAMKIFKELSSS---SNVSPN--TVIYNILIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 615 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
.+ ...++..++..|...|++++|..++++.... ...++. ...+..++..+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1345666667777777777777777665431 111111 13455556666666777777777766654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-05 Score=66.13 Aligned_cols=97 Identities=13% Similarity=-0.016 Sum_probs=45.5
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC--C
Q 048807 330 VTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP--N 407 (757)
Q Consensus 330 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~ 407 (757)
..+..+...+...|++++|...++++++.. +.+..++..+...+...|++++|.+.+++... ..+. +
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~~ 75 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-------PEESKYWLMKGKALYNLERYEEAVDCYNYVIN----VIEDEYN 75 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TSCCTTC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCcccch
Confidence 334444444455555555555555554432 23344444555555555555555555554421 1122 3
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhC
Q 048807 408 AVTYNCLINGFCKS-GNIEKGLELFHLMKQE 437 (757)
Q Consensus 408 ~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 437 (757)
...|..+...+.+. |++++|.+.++...+.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 44444455555555 5555555555554443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.6e-05 Score=68.88 Aligned_cols=98 Identities=11% Similarity=0.030 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHh
Q 048807 292 LEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVI 371 (757)
Q Consensus 292 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 371 (757)
.+...|..+...+...|++++|...|++.+... +.+...|..+...+...|++++|+..++++++.+ +.+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~ 78 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSVK 78 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------chhHH
Confidence 356777777888888888888888888877764 3356667777777778888888888888877754 45667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 372 IFNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 372 ~~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
.+..+...|...|++++|...|++..
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777888888888888888777764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.11 E-value=5.8e-05 Score=64.38 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCc---cchHHHH
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEA---ASCNALLNALGREGDFKRMNQLFTEMKENDIEPS---VVTFGTI 335 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l 335 (757)
+..+...+.+.|++++|...|+.+.+..+. +. ..+..+...+.+.|++++|...|+++.+.. +.+ ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 344677888999999999999999987654 33 688889999999999999999999999874 223 4567788
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 048807 336 INRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
..++.+.|++++|...|+++++..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 889999999999999999998863
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=9.7e-05 Score=78.38 Aligned_cols=198 Identities=12% Similarity=0.018 Sum_probs=144.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC
Q 048807 449 LVDGMCRHGRINSAVEFFQEVTRKGLCAN----------------AVTYTILITAFCNVNNFQEAIKWFDDMSRAGC-SA 511 (757)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~ 511 (757)
-...+.+.|++++|.+.|.++++...... ..++..++..|.+.|++++|.+.+.++...-- .+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 35667889999999999999998754321 12467789999999999999999998875311 11
Q ss_pred CH----hhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-
Q 048807 512 DS----VVYFTLISGLCQAGRMNDASLVVSKLKEA----GFRPD-IVCYNHLISGFCKKKMLDKAYEVLQEMEDI--GM- 579 (757)
Q Consensus 512 ~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~- 579 (757)
+. .+.+.+...+...|++++|..+++..... +..+. ..++..+...|...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 22 12233334445678999999999886542 22333 457788999999999999999999987643 11
Q ss_pred -CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 580 -TP-NSVTYNTLISFLSKSGNFSAARRVLKKMVKE--GLV-P-T--VVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 580 -~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~-p-~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
.+ ...++..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2357888899999999999999999988753 111 2 1 24566667777889999999999988766
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.7e-05 Score=83.21 Aligned_cols=131 Identities=11% Similarity=-0.021 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE--------------AASCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
....+..+...|.+.|++++|+..|+++++..+... ..+|..+..+|.+.|++++|+..|++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345788899999999999999999999998765422 689999999999999999999999999987
Q ss_pred CCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHH-HHHHH
Q 048807 324 DIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALG-LIEQM 396 (757)
Q Consensus 324 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~ 396 (757)
. +.+...|..+..+|...|++++|+..|+++++.. +.+..++..+..++.+.++.++|.+ .+..|
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4567889999999999999999999999999875 5567888999999999998887764 44444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.3e-05 Score=69.81 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----HH
Q 048807 585 TYNTLISFLSKSGNFSAARRVLKKMVKEGLV-PT----VVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPN----TV 655 (757)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 655 (757)
++..+...|...|++++|...+++.++.... ++ ..++..+...+...|++++|...+++..+.....++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555554432000 01 124445555555666666666665554431100011 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVK----EVRP-NTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
.+..+...+...|++++|...+++..+. +..+ ....+..+..++...|++++|.+.+++.++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4555666666666666666666665531 1111 123455666666777777777777776654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.05 E-value=8.8e-06 Score=87.39 Aligned_cols=121 Identities=14% Similarity=0.017 Sum_probs=98.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
+...|.+.|++++|++.|+++.+..+. +..+|..+..+|.+.|++++|.+.+++.++.. +.+..++..+...|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 445667889999999999999988654 78999999999999999999999999999975 4467788999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHH--HHHcCCHHHHHHHHH
Q 048807 345 ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDG--LCKVGKQEEALGLIE 394 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 394 (757)
+++|++.|+++++.. +.+..++..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-------PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-------TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999864 4455566666666 888899999999988
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.2e-05 Score=70.40 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKF--------DA---------PLEAASCNALLNALGREGDFKRMNQLFTEMK 321 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 321 (757)
...+......+.+.|++++|+..|.+.++. .+ +.+...|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 346777889999999999999999998875 11 1245789999999999999999999999999
Q ss_pred HCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 048807 322 ENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 322 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
+.+ +.+...|..+..+|...|++++|+..|+++++.+
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 875 4567889999999999999999999999999854
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=2.9e-05 Score=65.60 Aligned_cols=96 Identities=14% Similarity=-0.017 Sum_probs=63.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHH
Q 048807 331 TFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVT 410 (757)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 410 (757)
.+..+...+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|++... -.+.+...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~~~~ 87 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-------PEREEAWRSLGLTQAENEKDGLAIIALNHARM----LDPKDIAV 87 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHH
Confidence 34555566667777777777777777654 45666777777777777777777777776632 22445666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 048807 411 YNCLINGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
+..+..+|.+.|++++|++.+++.++.
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777777776654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=4.7e-05 Score=67.67 Aligned_cols=140 Identities=13% Similarity=0.030 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-Cc----cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCH
Q 048807 296 SCNALLNALGREGDFKRMNQLFTEMKENDIE-PS----VVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDV 370 (757)
Q Consensus 296 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 370 (757)
++..+...|...|++++|.+.+++..+.... ++ ..++..+...+...|++++|.+.+++.++..... .......
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL-KDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCcHHHH
Confidence 4455555555555666555555555432100 01 1355666677777777887777777766431000 0001124
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 371 IIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKG-C-MPNAVTYNCLINGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 371 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (757)
.++..+...+...|++++|.+.+++........ . .....++..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 466777778888888888888887764221111 0 11133455566666666666666666665543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.9e-05 Score=80.18 Aligned_cols=123 Identities=14% Similarity=0.052 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHh----------------CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMK----------------FDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
..+..+...|.+.|++++|++.|+++++ ..+ .+..+|..+..+|.+.|++++|++.+++.++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-VALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 3577889999999999999999999987 322 25678999999999999999999999999987
Q ss_pred CCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHH
Q 048807 324 DIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALG 391 (757)
Q Consensus 324 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 391 (757)
. +.+...|..+..+|...|++++|++.|+++++.. +.+...+..+...+.+.++.+++.+
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-------P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-------PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4467788899999999999999999999999864 5577788888888888887777654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.1e-05 Score=67.85 Aligned_cols=87 Identities=14% Similarity=0.065 Sum_probs=65.2
Q ss_pred HcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHH
Q 048807 271 RKGKTDEAWDVLHVLMKFD--APLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEA 348 (757)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 348 (757)
..|++++|+..|+++++.+ .+.+..+|..+...|.+.|++++|.+.|++.++.. +.+..++..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3578888888888888864 12256778888888888888888888888888874 34567777888888888888888
Q ss_pred HHHHHHHHhC
Q 048807 349 LEVFEKMIAG 358 (757)
Q Consensus 349 ~~~~~~~~~~ 358 (757)
+..+++.++.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888775
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00016 Score=61.46 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=54.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCcc---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCC---HhH
Q 048807 299 ALLNALGREGDFKRMNQLFTEMKENDIEPSV---VTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPD---VII 372 (757)
Q Consensus 299 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~ 372 (757)
.+...+.+.|++++|...|+++.+.. +.+. ..+..+...+.+.|++++|+..|+++++.. +.+ ..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~ 78 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-------PTHDKAAGG 78 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTSTTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-------CCCcccHHH
Confidence 34455666667777777776666643 1122 255556666666666666666666666543 222 445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
+..+..+|.+.|++++|...|+++.
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666666666666666666653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.95 E-value=7.4e-05 Score=65.23 Aligned_cols=98 Identities=17% Similarity=0.081 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC------CH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHC-----
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPL------EA-----ASCNALLNALGREGDFKRMNQLFTEMKEN----- 323 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 323 (757)
..+......+.+.|++++|+..|+++++..+.. +. ..|+.+..++.+.|++++|+..|++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 356678888999999999999999999876541 23 39999999999999999999999999986
Q ss_pred --CCCCccchH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 048807 324 --DIEPSVVTF----GTIINRLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 324 --g~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~ 358 (757)
+ +-+...| .....++...|++++|+..|++.++.
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4 3356678 88999999999999999999999874
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.94 E-value=8.4e-05 Score=66.51 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048807 654 TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 654 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
...|..+..+|.+.|++++|+..+++.+... +.+...|..++.++...|++++|+..|++.++. .|+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 4567888888888888888888888888752 345778888888888888888888888888864 5654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.94 E-value=3e-05 Score=83.21 Aligned_cols=123 Identities=11% Similarity=0.017 Sum_probs=90.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHH
Q 048807 298 NALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLI 377 (757)
Q Consensus 298 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li 377 (757)
..+...+.+.|++++|.+.|++.++.. +.+..+|..+..+|.+.|++++|++.++++++.+ +.+..+|..+.
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~lg 81 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------KKYIKGYYRRA 81 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHHHHHH
Confidence 334455677889999999999888864 3456778888888888999999999999988865 55678888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 048807 378 DGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING--FCKSGNIEKGLELFH 432 (757)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 432 (757)
..|.+.|++++|++.|++.... .+.+...+..+..+ +.+.|++++|++.++
T Consensus 82 ~~~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 82 ASNMALGKFRAALRDYETVVKV----KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH----STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8899999999999998887522 23344555555555 778888888888887
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00027 Score=77.20 Aligned_cols=175 Identities=11% Similarity=0.023 Sum_probs=124.6
Q ss_pred HHcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 270 CRKGK-TDEAWDVLHVLMKFDAPLEAASCNALLNALGREGD----------FKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 270 ~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
.+.|+ -++|++.++.+++.++. +..+|+.-...+.+.|+ ++++++.++++.+.. +-+..+|..-...
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~ 116 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 116 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34444 46789999999988766 78888888777777777 888888888888875 4467778887777
Q ss_pred HHhcC--ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 048807 339 LCKLY--RADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVG-KQEEALGLIEQMRLRLQKGCMPNAVTYNCLI 415 (757)
Q Consensus 339 ~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 415 (757)
+.+.| +++++++.++++++.+ +.|..+|+.-.-.+.+.| .++++++.++++ ....+.|..+|+...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d-------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~----I~~~p~n~saW~~r~ 185 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSL----ITRNFSNYSSWHYRS 185 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT----TTTTCCCHHHHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHhhc-------cccccHHHHHHHHHHHcCCChHHHHHHHHHH----HHHCCCCccHHHHHH
Confidence 88888 6688889898888876 667888888888888888 788888888877 444566788888777
Q ss_pred HHHHHc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 048807 416 NGFCKS--------------GNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGR 458 (757)
Q Consensus 416 ~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 458 (757)
..+.+. +.++++++.+++....... |...|.-+...+.+.++
T Consensus 186 ~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred HHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 766653 3345555555555554322 44445544444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.91 E-value=9.3e-05 Score=79.02 Aligned_cols=142 Identities=12% Similarity=-0.020 Sum_probs=79.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCc----------------cchHHHHH
Q 048807 273 GKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPS----------------VVTFGTII 336 (757)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~li 336 (757)
+++++|++.|+...+..+ .....|..+...|.+.|++++|...|++.++.. |+ ...|..+.
T Consensus 248 ~~~~~A~~~~~~~~~~~~-~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKL-EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHH
Confidence 344555555544333211 145678889999999999999999999998753 22 24455555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN 416 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (757)
.+|.+.|++++|+..++++++.+ +.+..+|..+..+|...|++++|+..|++.. .-.+.+...+..+..
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al----~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLD-------SANEKGLYRRGEAQLLMNEFESAKGDFEKVL----EVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----TTC----CHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHccCHHHHHHHHHHHH----HhCCCCHHHHHHHHH
Confidence 55555555555555555555543 3345555555555555555555555555542 222333444555555
Q ss_pred HHHHcCCHHHHH
Q 048807 417 GFCKSGNIEKGL 428 (757)
Q Consensus 417 ~~~~~g~~~~A~ 428 (757)
++.+.++.+++.
T Consensus 394 ~~~~~~~~~~a~ 405 (457)
T 1kt0_A 394 CQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0004 Score=75.88 Aligned_cols=173 Identities=11% Similarity=0.052 Sum_probs=129.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 048807 563 MLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGN----------FSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNG 632 (757)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 632 (757)
..++|++.++++.+.. +.+..+|+.-...+.+.|+ ++++++.++++++... -+..+|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc
Confidence 3457788888888775 5566677776666666666 8888888888887642 36777877777778888
Q ss_pred --CHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-------
Q 048807 633 --HVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNN-QVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQK------- 702 (757)
Q Consensus 633 --~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~------- 702 (757)
+++++++.++++.+. -+.|...|+.....+.+.| .++++++.++++++.. +-|...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 668888888888882 3357778888888888888 8888888888888753 34677787777776653
Q ss_pred -------CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 048807 703 -------NMLDKAFKLMDRMIEHACHP-DYISMEILTEWLSEAGQTEK 742 (757)
Q Consensus 703 -------g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 742 (757)
+.+++|++++++++.. .| |...|..+...+.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 5689999999999874 45 45888888888877776443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.89 E-value=7.5e-05 Score=77.09 Aligned_cols=139 Identities=6% Similarity=-0.087 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHH
Q 048807 294 AASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIF 373 (757)
Q Consensus 294 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (757)
...|..+...+.+.|++++|.+.|++.++.- ++. ..... .+...+. .+.+..+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~-------~~~~~~~-------~~~~~~~~ 276 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAE-------DADGAKL-------QPVALSCV 276 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSC-------HHHHGGG-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccC-------hHHHHHH-------HHHHHHHH
Confidence 3457788889999999999999999888620 000 00000 0111001 12233445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 374 NTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGM 453 (757)
Q Consensus 374 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 453 (757)
..+..+|.+.|++++|++.+++.. ...+.+...|..+..+|...|++++|++.|++..+... .+...+..+...+
T Consensus 277 ~nla~~~~~~g~~~~A~~~~~~al----~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 277 LNIGACKLKMSDWQGAVDSCLEAL----EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH----TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHH----HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 555555555555555555555542 22233445555555555555555555555555554421 1344444444444
Q ss_pred HHcCChHHHH
Q 048807 454 CRHGRINSAV 463 (757)
Q Consensus 454 ~~~g~~~~A~ 463 (757)
...++.+++.
T Consensus 352 ~~~~~~~~a~ 361 (370)
T 1ihg_A 352 QKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00014 Score=63.57 Aligned_cols=93 Identities=9% Similarity=-0.069 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------H-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVKEVRPN--------T-----NTYNAMFKGLRQKNMLDKAFKLMDRMIEH---- 718 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 718 (757)
.+...+..+.+.|++++|+..|++.++. .|+ . ..|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3556666777777777777777777763 233 2 27888888888889999999888888862
Q ss_pred -CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHhhc
Q 048807 719 -ACHPDY-ISM----EILTEWLSEAGQTEKLKKFVQGY 750 (757)
Q Consensus 719 -g~~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~ 750 (757)
.+.|+. ..| .....++...|++++|...+++-
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 127766 677 88899999999999999988873
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.5e-05 Score=65.60 Aligned_cols=84 Identities=10% Similarity=-0.001 Sum_probs=52.2
Q ss_pred cCChhHHHHHHHHHHHCC--CCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcC
Q 048807 307 EGDFKRMNQLFTEMKEND--IEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVG 384 (757)
Q Consensus 307 ~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 384 (757)
.|++++|...|++.++.+ -+.+...+..+...|...|++++|+..|+++++.. +.+..++..+..+|.+.|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-------PNHQALRVFYAMVLYNLG 75 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHcC
Confidence 466777777777776653 12234556666667777777777777777776653 445666666777777777
Q ss_pred CHHHHHHHHHHHH
Q 048807 385 KQEEALGLIEQMR 397 (757)
Q Consensus 385 ~~~~A~~~~~~~~ 397 (757)
++++|...+++..
T Consensus 76 ~~~~A~~~~~~al 88 (117)
T 3k9i_A 76 RYEQGVELLLKII 88 (117)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777777776654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.4e-05 Score=64.64 Aligned_cols=96 Identities=11% Similarity=-0.005 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 048807 653 NTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPD-------YI 725 (757)
Q Consensus 653 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~ 725 (757)
+...+..++..+.+.|++++|+..|++.++.. +.+...|..++.++.+.|++++|++.++++++ +.|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 44567778888888888888888888888742 34677788888888888888888888888885 3554 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhch
Q 048807 726 SMEILTEWLSEAGQTEKLKKFVQGYA 751 (757)
Q Consensus 726 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (757)
.+..+..++...|+.++|.+.++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 66667777777777777777666654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.78 E-value=5.6e-05 Score=77.11 Aligned_cols=150 Identities=14% Similarity=0.053 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
....+..+...|.+.|++++|+..|+++++.. |+... +...|+.+++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 35567777777778888888888888877653 22211 222333333332221 125677778
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING 417 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (757)
+|.+.|++++|+..++++++.+ +.+..+|..+..+|...|++++|...|++.. .-.+.+...+..+...
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al----~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-------EKNPKALFRRGKAKAELGQMDSARDDFRKAQ----KYAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT----C---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHCCCCHHHHHHHHHH
Confidence 8888888888888888888764 4567788888888888888888888888773 2233345555555544
Q ss_pred -HHHcCCHHHHHHHHHHHHhC
Q 048807 418 -FCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 418 -~~~~g~~~~A~~~~~~m~~~ 437 (757)
....+..+++.++|..|...
T Consensus 308 ~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 308 AEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCC
Confidence 23345566666777776654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.72 E-value=5.7e-05 Score=77.05 Aligned_cols=134 Identities=11% Similarity=-0.035 Sum_probs=62.5
Q ss_pred cccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 048807 236 NSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQ 315 (757)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 315 (757)
.....++|...+.+.++.. |+... +...|+.+++...+. ..+|+.+..+|.+.|++++|+.
T Consensus 191 ~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 191 KEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp SSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHTTTCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHHcCCHHHHHH
Confidence 4456688888888877652 33221 222333333332221 1356667777777777777777
Q ss_pred HHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHH-HHcCCHHHHHHHHH
Q 048807 316 LFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGL-CKVGKQEEALGLIE 394 (757)
Q Consensus 316 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~ 394 (757)
.|++.++.. +.+...|..+..+|...|++++|+..|+++++.. +.+..++..+.... ...+..+++...|.
T Consensus 252 ~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-------p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 252 HCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-------PDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777653 3355666777777777777777777777776543 33444555554442 23445556666666
Q ss_pred HH
Q 048807 395 QM 396 (757)
Q Consensus 395 ~~ 396 (757)
++
T Consensus 324 ~~ 325 (338)
T 2if4_A 324 GI 325 (338)
T ss_dssp --
T ss_pred Hh
Confidence 65
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00025 Score=75.52 Aligned_cols=134 Identities=10% Similarity=-0.017 Sum_probs=84.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC----CCCHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEP-DVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGC----MPNAVTYN 412 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~~ 412 (757)
.+...|++++|+.++++.++..+..-..-.| -..+++.|...|...|++++|+.++++.......-. +....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4557899999999999887643211111122 245789999999999999999999887643212111 22245677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-----CCC-CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 048807 413 CLINGFCKSGNIEKGLELFHLMKQE-----GVT-PN-VVTLNTLVDGMCRHGRINSAVEFFQEVTR 471 (757)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 471 (757)
.|...|...|++++|+.++++..+. |.. |+ ..+.+.+..++...+.+++|..+|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887776542 211 11 12334444555555666666666655544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00038 Score=74.12 Aligned_cols=128 Identities=8% Similarity=-0.034 Sum_probs=87.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHH
Q 048807 379 GLCKVGKQEEALGLIEQMRLRLQKGCMPN----AVTYNCLINGFCKSGNIEKGLELFHLMKQE-----G-VTPN-VVTLN 447 (757)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~ 447 (757)
.+...|++++|+.++++.......-..++ ..+++.|...|...|++++|+.++++.++. | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45578999999999888754323322232 567888899999999999999888887642 2 1222 35678
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC-----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048807 448 TLVDGMCRHGRINSAVEFFQEVTRK-----GLC-A-NAVTYTILITAFCNVNNFQEAIKWFDDMSR 506 (757)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (757)
.|...|...|++++|..+++++++. |.. | ...+.+.+..++...+.+++|..+|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888876652 322 1 123445555666677777777777777654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0014 Score=56.64 Aligned_cols=87 Identities=9% Similarity=0.025 Sum_probs=36.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 048807 449 LVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCN----VNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLC 524 (757)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 524 (757)
+...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|+..|++..+.| +...+..|...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3333333444444444444444432 33344444444444 344444444444444433 3333444444443
Q ss_pred h----cCChhHHHHHHHHHHH
Q 048807 525 Q----AGRMNDASLVVSKLKE 541 (757)
Q Consensus 525 ~----~g~~~~A~~~~~~~~~ 541 (757)
. .++.++|...|++..+
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHH
Confidence 3 3444444444444433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.64 E-value=3.6e-05 Score=63.55 Aligned_cols=94 Identities=9% Similarity=-0.014 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCc-------cc
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPS-------VV 330 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 330 (757)
+...+..+...+.+.|++++|++.|+++.+..+. +...|..+..+|.+.|++++|.+.|++.++.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 4557788999999999999999999999988755 78999999999999999999999999999864 44 33
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHH
Q 048807 331 TFGTIINRLCKLYRADEALEVFEK 354 (757)
Q Consensus 331 ~~~~li~~~~~~g~~~~A~~~~~~ 354 (757)
.+..+..++...|+.++|++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 455555566666666555554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0002 Score=59.61 Aligned_cols=79 Identities=11% Similarity=0.024 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHH
Q 048807 277 EAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMI 356 (757)
Q Consensus 277 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 356 (757)
+|++.|+++.+.++. +...|..+...|.+.|++++|...|++.++.+ +.+...|..+...|...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666666665543 56666666677777777777777777766653 3345556666666777777777777777665
Q ss_pred h
Q 048807 357 A 357 (757)
Q Consensus 357 ~ 357 (757)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0012 Score=56.98 Aligned_cols=48 Identities=19% Similarity=0.044 Sum_probs=19.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 048807 561 KKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK----SGNFSAARRVLKKMVK 611 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 611 (757)
.+++++|.+.|++..+.| +...+..|...|.. .+++++|...|++..+
T Consensus 74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 334444444444444332 33333334444443 3444444444444444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00014 Score=63.40 Aligned_cols=99 Identities=15% Similarity=0.057 Sum_probs=75.5
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh----------hHHHHHHHHHHHCCCCCccchHHHHHHHH
Q 048807 270 CRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDF----------KRMNQLFTEMKENDIEPSVVTFGTIINRL 339 (757)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 339 (757)
.+.+.+++|++.+++..+.++. +...|+.+..++.+.|++ ++|+..|++.++.+ +.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 4556788888888888887765 788888888888887765 48888888888875 33567788888888
Q ss_pred Hhc-----------CChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHH
Q 048807 340 CKL-----------YRADEALEVFEKMIAGKETAEISVEPDVIIFNTLID 378 (757)
Q Consensus 340 ~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 378 (757)
... |++++|++.|+++++. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--------~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 776 4899999999999984 566555544433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00047 Score=54.14 Aligned_cols=62 Identities=21% Similarity=0.299 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048807 260 VWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKE 322 (757)
Q Consensus 260 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 322 (757)
..+..+...|.+.|++++|+..|++..+..+. +..+|..+...+.+.|++++|.+.|++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444555555555555555555444322 344444444444444444444444444444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00052 Score=53.89 Aligned_cols=66 Identities=23% Similarity=0.255 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++.++..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45677888888888899999999998888764 3456677888888888999999999998887765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00022 Score=62.04 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 632 GHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQ----------VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQ 701 (757)
Q Consensus 632 g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 701 (757)
+.+++|.+.++...+. -+.+...|..+..++.+.++ +++|+..|++.++.. +.+...|..++.+|..
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 3344444444444441 12233444444444444433 346666666666531 2244566666666665
Q ss_pred c-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 048807 702 K-----------NMLDKAFKLMDRMIEHACHPDYISMEILTEW 733 (757)
Q Consensus 702 ~-----------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 733 (757)
. |++++|++.|+++++ +.|+...|...+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 4 367777777777776 46766555444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00047 Score=57.27 Aligned_cols=61 Identities=16% Similarity=0.056 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 048807 583 SVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKEL 644 (757)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 644 (757)
...+..+...|...|++++|+..|++.++.. +.+...+..+..+|...|++++|...|++.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333344444444444444444444443321 112333333344444444444444444333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0011 Score=53.48 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048807 256 FPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKE 322 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 322 (757)
+.+..++..+..+|.+.|++++|+..|+++++.++. +..+|..+..+|.+.|++++|.+.|++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345566666777777777777777777777766544 556666777777777777777777766654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0012 Score=53.28 Aligned_cols=64 Identities=22% Similarity=0.211 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 653 NTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 653 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
+...+..++..|.+.|++++|+..|++.++.. +.+...|..++.+|...|++++|++.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45567777777777777777777777777642 23455677777777777777777777777764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0066 Score=60.78 Aligned_cols=74 Identities=15% Similarity=0.040 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 048807 651 SPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISME 728 (757)
Q Consensus 651 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 728 (757)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++++. +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 4577788888777777799999999999998863 7887888888888899999999999999886 477776654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0025 Score=50.92 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=63.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAA-SCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLY 343 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 343 (757)
.+..+.+.|++++|++.|+++.+.++. +.. .|..+...|...|++++|.+.|++.++.+ +.+...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------H
Confidence 566788999999999999999987654 677 89999999999999999999999999874 223333321 4
Q ss_pred ChhHHHHHHHHHHh
Q 048807 344 RADEALEVFEKMIA 357 (757)
Q Consensus 344 ~~~~A~~~~~~~~~ 357 (757)
.+.++...|++...
T Consensus 76 ~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 76 MVMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHHhc
Confidence 55666776666544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0052 Score=64.18 Aligned_cols=96 Identities=13% Similarity=-0.037 Sum_probs=66.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccccCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC---CC-CHHHHHHHH
Q 048807 341 KLYRADEALEVFEKMIAGKETAEISVEPD-VIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGC---MP-NAVTYNCLI 415 (757)
Q Consensus 341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~-~~~~~~~li 415 (757)
..|++++|+.++++.++..+..-..-.|+ ..+++.|...|...|++++|+.++++.......-. .| -..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35789999999998876322111111222 46788999999999999999999988643222211 22 245678888
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 048807 416 NGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~ 436 (757)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888877664
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.035 Score=55.62 Aligned_cols=66 Identities=8% Similarity=-0.036 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 405 MPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|+++...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4556666666666666677777777777776654 56666666666666677777777777666665
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.017 Score=60.47 Aligned_cols=101 Identities=13% Similarity=0.082 Sum_probs=70.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccc-cCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCC----CHHH
Q 048807 336 INRLCKLYRADEALEVFEKMIAGKETAEISV-EPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMP----NAVT 410 (757)
Q Consensus 336 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ 410 (757)
+..+.+.|++++|+.++++.++.....-... +.-..+++.|+..|...|++++|+.++++.......-..| -..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4456678899999999999987532211111 1224578899999999999999999998764322221122 2456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 411 YNCLINGFCKSGNIEKGLELFHLMKQ 436 (757)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (757)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78888888888888888888877664
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.03 Score=43.98 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 048807 256 FPNAVWLTQLITRFCRKGK---TDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKEND 324 (757)
Q Consensus 256 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 324 (757)
+.|...+..+..++...++ .++|..++++.++.++. ++.+...+...+.+.|++++|...|+++++.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4577778888888865555 68999999999998866 88889999999999999999999999999875
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.011 Score=46.94 Aligned_cols=80 Identities=23% Similarity=0.229 Sum_probs=52.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc
Q 048807 660 LIDSLCKNNQVELALSLMEEMKVKEVRPNTN-TYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEILTEWLSEA 737 (757)
Q Consensus 660 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~ 737 (757)
.+..+.+.|++++|+..|+++.+.. +.+.. .|..++.++...|++++|++.|+++++. .|+. ..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH--------
Confidence 4556677788888888888877642 23456 7777777888888888888888888764 4443 33211
Q ss_pred CCHHHHHHHHhhc
Q 048807 738 GQTEKLKKFVQGY 750 (757)
Q Consensus 738 g~~~~A~~~~~~~ 750 (757)
+.++++...+++.
T Consensus 75 ~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 75 KMVMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHH
Confidence 4455666666553
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.014 Score=61.04 Aligned_cols=89 Identities=8% Similarity=-0.077 Sum_probs=57.6
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHH
Q 048807 383 VGKQEEALGLIEQMRLRLQKGCMPN----AVTYNCLINGFCKSGNIEKGLELFHLMKQE-----G-VTPN-VVTLNTLVD 451 (757)
Q Consensus 383 ~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~li~ 451 (757)
.|++++|+.++++.......-..|+ ..+++.|...|...|++++|+.++++.++. | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4778888888877653322222222 456778888888888888888888776642 2 1222 245667777
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 048807 452 GMCRHGRINSAVEFFQEVTR 471 (757)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~~ 471 (757)
.|...|++++|..+++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777766554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.033 Score=58.20 Aligned_cols=93 Identities=13% Similarity=0.046 Sum_probs=49.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHH
Q 048807 379 GLCKVGKQEEALGLIEQMRLRLQKGCMPN----AVTYNCLINGFCKSGNIEKGLELFHLMKQE-----G-VTPN-VVTLN 447 (757)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~ 447 (757)
-+.+.|++++|+.++++.......-..|+ ..+++.++..|...|++++|+.+++++++. | ..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34456667777776666542211112222 345666666666666666666666655532 1 1111 23455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 048807 448 TLVDGMCRHGRINSAVEFFQEVTR 471 (757)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~~~~ 471 (757)
.|...|...|++++|..+++++.+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 566666666666666665555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.17 Score=58.20 Aligned_cols=188 Identities=12% Similarity=0.051 Sum_probs=103.9
Q ss_pred HHHhcCCHHHHHH-HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048807 487 AFCNVNNFQEAIK-WFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLD 565 (757)
Q Consensus 487 ~~~~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 565 (757)
.....+++++|.+ ++..+. +......++..+.+.|..++|.++.+. .. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHH
Confidence 3445778888766 442211 122336677777788888887765531 11 1123345678888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 048807 566 KAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELS 645 (757)
Q Consensus 566 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 645 (757)
+|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...|...|+.+...++-+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 887765432 3667788888888888888888887776643 2334444445555555444433333
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-
Q 048807 646 SSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY- 724 (757)
Q Consensus 646 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~- 724 (757)
. .|. ++....+|.+.|++++|++ .|.+.|++++|..+-++. .|..
T Consensus 735 ~-~~~------~~~A~~~~~~~g~~~~a~~----------------------~~~~~~~~~~A~~lA~~~-----~~~~~ 780 (814)
T 3mkq_A 735 T-TGK------FNLAFNAYWIAGDIQGAKD----------------------LLIKSQRFSEAAFLGSTY-----GLGDN 780 (814)
T ss_dssp H-TTC------HHHHHHHHHHHTCHHHHHH----------------------HHHHTTCHHHHHHHHHHT-----TCCHH
T ss_pred H-cCc------hHHHHHHHHHcCCHHHHHH----------------------HHHHcCChHHHHHHHHHh-----CCChH
Confidence 3 111 2223333444444444444 445556677777665542 3444
Q ss_pred ---HHHHHHHHHHHhcCCHH
Q 048807 725 ---ISMEILTEWLSEAGQTE 741 (757)
Q Consensus 725 ---~~~~~l~~~~~~~g~~~ 741 (757)
.........+...|+.+
T Consensus 781 ~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 781 EVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp HHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHhccchh
Confidence 44444555566667643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.18 Score=57.89 Aligned_cols=190 Identities=14% Similarity=0.095 Sum_probs=117.2
Q ss_pred HHHHHcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 048807 451 DGMCRHGRINSAVE-FFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRM 529 (757)
Q Consensus 451 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 529 (757)
......+++++|.+ ++..+ ++......++..+.+.|..++|+++.++.. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 44456889999877 54221 112334778888999999999987664211 113345778999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 530 NDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKM 609 (757)
Q Consensus 530 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (757)
++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...|...|+.+...++-+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9999886543 3778999999999999999999999987652 223444455566666544444333
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 048807 610 VKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNT 689 (757)
Q Consensus 610 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 689 (757)
...|+++.|...+...-+ +...++.|.+.+++++|..+-+.. .|..
T Consensus 734 -------------------~~~~~~~~A~~~~~~~g~----------~~~a~~~~~~~~~~~~A~~lA~~~-----~~~~ 779 (814)
T 3mkq_A 734 -------------------ETTGKFNLAFNAYWIAGD----------IQGAKDLLIKSQRFSEAAFLGSTY-----GLGD 779 (814)
T ss_dssp -------------------HHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHT-----TCCH
T ss_pred -------------------HHcCchHHHHHHHHHcCC----------HHHHHHHHHHcCChHHHHHHHHHh-----CCCh
Confidence 344455555544433222 334455556666777777766542 2333
Q ss_pred ----HHHHHHHHHHHHcCCHHH
Q 048807 690 ----NTYNAMFKGLRQKNMLDK 707 (757)
Q Consensus 690 ----~~~~~l~~~~~~~g~~~~ 707 (757)
.........+...|+.+.
T Consensus 780 ~~i~~~~~~~~~~L~~~~~~~~ 801 (814)
T 3mkq_A 780 NEVNDIVTKWKENLILNGKNTV 801 (814)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccchhH
Confidence 333333444555565433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.58 Score=41.21 Aligned_cols=128 Identities=9% Similarity=0.069 Sum_probs=91.2
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhH
Q 048807 268 RFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADE 347 (757)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 347 (757)
....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 456789999999998775 2788999999999999999999999988653 4556666777888877
Q ss_pred HHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 048807 348 ALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKG 427 (757)
Q Consensus 348 A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 427 (757)
-.++-+.....+ -++.....+.-.|+++++.++|.+.. ..| --+......|-.+.|
T Consensus 79 L~kla~iA~~~g------------~~n~af~~~l~lGdv~~~i~lL~~~~------r~~------eA~~~A~t~g~~~~a 134 (177)
T 3mkq_B 79 LSKMQNIAQTRE------------DFGSMLLNTFYNNSTKERSSIFAEGG------SLP------LAYAVAKANGDEAAA 134 (177)
T ss_dssp HHHHHHHHHHTT------------CHHHHHHHHHHHTCHHHHHHHHHHTT------CHH------HHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCc------------cHHHHHHHHHHcCCHHHHHHHHHHCC------ChH------HHHHHHHHcCcHHHH
Confidence 776666655544 24445556667899999999987652 111 111122235667777
Q ss_pred HHHHHHH
Q 048807 428 LELFHLM 434 (757)
Q Consensus 428 ~~~~~~m 434 (757)
.++.+.+
T Consensus 135 ~~~~~~~ 141 (177)
T 3mkq_B 135 SAFLEQA 141 (177)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777665
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.68 Score=38.17 Aligned_cols=139 Identities=14% Similarity=0.055 Sum_probs=92.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048807 560 KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMK 639 (757)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 639 (757)
-.|..++..++..+.... .+..-||.+|--....-+-+-..++++..-+. .| ...+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHH
Confidence 356666777766666654 24555555554444444444444444444321 12 134566666666
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048807 640 IFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHA 719 (757)
Q Consensus 640 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 719 (757)
.+-.+-. +.......++.+..+|+-++-.++...+... .+|++.....+..+|.+-|+..+|.+++.++.+.|
T Consensus 83 C~~~~n~------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 83 CGVINNT------LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhcc------hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 5544322 4445677788888999999999999886542 47889999999999999999999999999999888
Q ss_pred CC
Q 048807 720 CH 721 (757)
Q Consensus 720 ~~ 721 (757)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 64
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.55 Score=41.36 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=50.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 048807 594 SKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELA 673 (757)
Q Consensus 594 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 673 (757)
.+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+.-
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHH
Confidence 3455566665555443 2455566666666666666666666655433 33444444455555554
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 674 LSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRM 715 (757)
Q Consensus 674 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 715 (757)
.++-+.....| -++....++...|+++++++++.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 44444433332 1233333444556666666555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.099 Score=40.96 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 048807 291 PLEAASCNALLNALGREGD---FKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 291 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 359 (757)
+.+...+..+..++...++ .++|..++++.++.+ +.++.+...+...+.+.|++++|+..|+++++.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3578888899988876555 799999999999986 4567778888899999999999999999999865
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.47 E-value=4.6 Score=45.77 Aligned_cols=310 Identities=12% Similarity=0.068 Sum_probs=166.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-------CCCHHHHHHHH
Q 048807 415 INGFCKSGNIEKGLELFHLMKQEGVTPN--VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGL-------CANAVTYTILI 485 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~li 485 (757)
.-+....|+.++++.+++.....+-..+ ...-..+.-+....|..+++..++...+...- .+....-.++.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 3456677888888888877664211112 23333444556666766778887777665321 01122223333
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHcCCCCCHhh--HH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 048807 486 TAFCNVNN-FQEAIKWFDDMSRAGCSADSVV--YF--TLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCK 560 (757)
Q Consensus 486 ~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~--~~--~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 560 (757)
-+++-.|. -+++...+..++... +... .. +|...+...|+.+-...++..+.+.. .-+..-...+.-++..
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhh
Confidence 33433342 245666666666542 2211 22 23333456677777777777766542 1122222333334457
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-HHH---HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCH
Q 048807 561 KKMLDKAYEVLQEMEDIGMTPNSV-TYN---TLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIH--AFCVNGHV 634 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~ 634 (757)
.|+.+.+..+.+.+.... +.. -|. ++.-+|+..|+.....+++..+.+. ++..+....+. ++...|+.
T Consensus 537 ~g~~e~~~~li~~L~~~~---dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 537 YGRQELADDLITKMLASD---ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSC
T ss_pred CCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCH
Confidence 888888888888887642 332 222 3445667788887777788888874 23333333333 34456777
Q ss_pred HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---------C
Q 048807 635 DEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQV-ELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKN---------M 704 (757)
Q Consensus 635 ~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---------~ 704 (757)
+.+.++++.+.+ .+ .|.+..-..+.-+....|+. .+|+..+..+.. .+|..+-..-+.++..-| +
T Consensus 611 e~v~rlv~~L~~-~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~r 685 (963)
T 4ady_A 611 TTVPRIVQLLSK-SH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQ 685 (963)
T ss_dssp SSHHHHTTTGGG-CS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTT
T ss_pred HHHHHHHHHHHh-cC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchH
Confidence 777777776665 22 34444444444444445443 678888888875 456554444444443332 3
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCC
Q 048807 705 LDKAFKLMDRMIEH-ACHPDYISMEILTEWLSEAGQ 739 (757)
Q Consensus 705 ~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~ 739 (757)
+..-++.+.+.... .-+++...-..+..++...|.
T Consensus 686 va~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 686 VADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 34444444444332 113334555566666666653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=1.4 Score=42.17 Aligned_cols=90 Identities=12% Similarity=0.107 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCH
Q 048807 529 MNDASLVVSKLKEAGFRPD---IVCYNHLISGFCKK-----KMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKS-GNF 599 (757)
Q Consensus 529 ~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 599 (757)
...|...+++..+. .|+ -..|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566666666665 344 44677777777774 78888888888877774222366666777777764 778
Q ss_pred HHHHHHHHHHHhCCCC--CCHHH
Q 048807 600 SAARRVLKKMVKEGLV--PTVVT 620 (757)
Q Consensus 600 ~~A~~~~~~m~~~~~~--p~~~~ 620 (757)
++|.+.+++.+..... |+...
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhH
Confidence 8888888887776554 55433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.17 Score=43.44 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048807 652 PNTVIYNILIDSLCKNN---QVELALSLMEEMKVKEVRP--NTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 652 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
++..+...+..++++.+ ++++++.++++..+.. .| +...+-.+.-++.+.|++++|.++++.+++ +.|+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQN 104 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 45555555555666655 4446666666655532 13 233444455555666666666666666665 35543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.091 Score=42.21 Aligned_cols=67 Identities=12% Similarity=-0.064 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFD------APLEAASCNALLNALGREGDFKRMNQLFTEMKEN 323 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 323 (757)
.+..-|..|...+.+.|+++.|...|+.+.+.. .......+..+..+|.+.|+++.|...++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 355567789999999999999999999987642 1235678899999999999999999999999876
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.12 Score=44.29 Aligned_cols=79 Identities=10% Similarity=0.011 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCC--ccchHHHHHHHHHhcCChhHHHHH
Q 048807 277 EAWDVLHVLMKFDAPLEAASCNALLNALGREG---DFKRMNQLFTEMKENDIEP--SVVTFGTIINRLCKLYRADEALEV 351 (757)
Q Consensus 277 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~ 351 (757)
.+.+-|.+..+.+. ++..+...+..++++.+ +++++..+|++..+.+ .| +...+..+.-++.+.|++++|++.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444444443 35555555555555555 4445555555555543 12 233334444555666666666666
Q ss_pred HHHHHh
Q 048807 352 FEKMIA 357 (757)
Q Consensus 352 ~~~~~~ 357 (757)
++.+++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666655
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.16 Score=40.74 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVKE------VRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
-...++..+.+.|+++.|...|+++.+.- -.+....+..+..++.+.|++++|+.+++++++ +.|+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 34455666666666666666666655420 122345666677777777777777777777765 34544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.94 Score=37.36 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 048807 442 NVVTLNTLVDGMCRHGRINSAVEFFQEVTRKG 473 (757)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 473 (757)
+......+..+|.+.|+..+|.+++.++.+.|
T Consensus 124 ~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 124 SASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33333344444444444444444444444433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0001 Score=74.88 Aligned_cols=249 Identities=12% Similarity=0.075 Sum_probs=159.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
.+.+|..|..++.+.|++.+|++.|-+. .|+..|..+|....+.|.+++-.+.+.-..+.. .+...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 3447888888888888888887765332 255667888888888888888888776665542 34455567888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------h-
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLR----------------L- 400 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------~- 400 (757)
+|++.++..+-.+.+ -.||+.-...+.+-|...|.++.|.-+|..+..- .
T Consensus 125 ayAk~~rL~elEefl-------------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp HHHTSCSSSTTTSTT-------------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTT
T ss_pred HHHhhCcHHHHHHHH-------------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 888888866533322 1456666666777777777777777666544100 0
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 048807 401 QKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVT 480 (757)
Q Consensus 401 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 480 (757)
...-..++.||-.+-.+|...+++.-|.-.--.++-. || -...++..|...|.+++-+.+++..... -......
T Consensus 192 aArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGm 265 (624)
T 3lvg_A 192 GARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGM 265 (624)
T ss_dssp TTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHH
T ss_pred HHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHH
Confidence 0001246778999999999998887776554444422 11 2334566788889999988888887743 2347778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC------CHhhHHHHHHHHHhcCChhHHHH
Q 048807 481 YTILITAFCNVNNFQEAIKWFDDMSR-AGCSA------DSVVYFTLISGLCQAGRMNDASL 534 (757)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~------~~~~~~~li~~~~~~g~~~~A~~ 534 (757)
|+-|.-.|++-. .++..+.++.... .+++. ....|.-++-.|.+-.+++.|..
T Consensus 266 FTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 266 FTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 888888888763 4444444332221 12221 23457777777777777776643
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.12 E-value=5.8 Score=44.93 Aligned_cols=269 Identities=9% Similarity=0.049 Sum_probs=144.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-----CCHhhHHHHHHHH
Q 048807 453 MCRHGRINSAVEFFQEVTRKGLCAN--AVTYTILITAFCNVNNFQEAIKWFDDMSRAGC--S-----ADSVVYFTLISGL 523 (757)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~-----~~~~~~~~li~~~ 523 (757)
....|+.++++.++...+..+-..+ ...-..+.-+....|..+++..++...+...- . +....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456677777766665544211112 23333444556666666677777777665321 0 1111122233333
Q ss_pred HhcCC-hhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHc
Q 048807 524 CQAGR-MNDASLVVSKLKEAGFRPDIV----CYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISF--LSKS 596 (757)
Q Consensus 524 ~~~g~-~~~A~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~ 596 (757)
...|. -+++.+.+..+.... +.. .-.++.-.+.-.|+.+....++..+.+.. +..+...++.+ +...
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 33343 245566666655532 221 12233344556777777778877776642 33333334444 4467
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHH-HH---HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 048807 597 GNFSAARRVLKKMVKEGLVPTVVT-YG---ALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVEL 672 (757)
Q Consensus 597 g~~~~A~~~~~~m~~~~~~p~~~~-~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 672 (757)
|+.+.+..+.+.+... .+... |. ++..+|+..|+.....++++.+.+. ...++.-...+.-++.-.|+.+.
T Consensus 538 g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 538 GRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp TCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSS
T ss_pred CChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHH
Confidence 8888888888888763 23332 22 3445677788887777788888772 22233333333334445666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 048807 673 ALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNML-DKAFKLMDRMIEHACHPDYISMEILTEWLSE 736 (757)
Q Consensus 673 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 736 (757)
+.++++.+.+.+ .|....-..+.-+....|.. .+|+..+..+.. ++|..+-..-+-++..
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 777776666543 33333333344444444443 678888888863 5666554444444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.24 Score=47.45 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhhcCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHc-
Q 048807 634 VDEAMKIFKELSSSSNVSPN---TVIYNILIDSLCKN-----NQVELALSLMEEMKVKEVRP--NTNTYNAMFKGLRQK- 702 (757)
Q Consensus 634 ~~~A~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~- 702 (757)
..+|...+++..+ +.|+ ...|..++..|.+. |+.++|.+.|++.++. .| +..++..+.+.+++.
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhc
Confidence 4556666666655 3455 34567777777773 7777777777777763 44 356666666767663
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 048807 703 NMLDKAFKLMDRMIEHACH 721 (757)
Q Consensus 703 g~~~~A~~~~~~~~~~g~~ 721 (757)
|+.++|.+++++.+.....
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 7777777777777765444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.01 E-value=1 Score=38.09 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=67.3
Q ss_pred ccchHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCcccccCCHh-HHHHHHH------HHHHcCCHHHHHHHHH
Q 048807 328 SVVTFGTIINRLCKLYRA------DEALEVFEKMIAGKETAEISVEPDVI-IFNTLID------GLCKVGKQEEALGLIE 394 (757)
Q Consensus 328 ~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~------~~~~~g~~~~A~~~~~ 394 (757)
|..+|-..+...-+.|+. ++.+++|++++.. ++|+.. .|...|. .+...++.++|.++|+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-------~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-------LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQ 84 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-------SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-------CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555666666666666777 7777888888775 355421 1111111 1234478888888888
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 048807 395 QMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPN 442 (757)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 442 (757)
.+... .+.. ...|......-.++|++.+|.+++...+..+.+|.
T Consensus 85 ~a~~~-hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 85 MARAN-CKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHH-CTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHH-hHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 88642 2222 77777777777888888888888888887765543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.77 E-value=0.0015 Score=66.58 Aligned_cols=237 Identities=13% Similarity=0.058 Sum_probs=153.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhccCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHH
Q 048807 147 SINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFY 226 (757)
Q Consensus 147 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~ 226 (757)
|+..|..++.+..+.|.+++-+..+..+.+..+++.+=+.|+-+|++.|++.+-.++. -.||......+-.
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl---------~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---------NGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT---------SCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH---------cCCCcccHHHHHH
Confidence 4455777888888889888888877766666667778888999999998877654433 2355544444444
Q ss_pred HHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 227 ALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGR 306 (757)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 306 (757)
.|...+.. +.|.-+ -.++.-|..|..++.+.|++..|.+.- .+. .++.||-.+-.+|..
T Consensus 153 rcf~e~lY------eAAKil---------ys~isN~akLAstLV~L~~yq~AVdaA---rKA---ns~ktWKeV~~ACvd 211 (624)
T 3lvg_A 153 RCYDEKMY------DAAKLL---------YNNVSNFGRLASTLVHLGEYQAAVDGA---RKA---NSTRTWKEVCFACVD 211 (624)
T ss_dssp HHHHSCCS------TTSSTT---------GGGSCCCTTTSSSSSSCSGGGSSTTTT---TTC---CSSCSHHHHTHHHHH
T ss_pred HHHHccCH------HHHHHH---------HHhCccHHHHHHHHHHHHHHHHHHHHH---Hhc---CChhHHHHHHHHHhC
Confidence 44433211 111101 122223556677777888888887543 222 367789999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCH
Q 048807 307 EGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQ 386 (757)
Q Consensus 307 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 386 (757)
.++|.-|.-.--.++-. +| -...++..|-..|.+++-+.+++..+... ....-.++.|.-.|++- +.
T Consensus 212 ~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-------rAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 212 GKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp SCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-------TCCHHHHHHHHHHHHSS-CT
T ss_pred chHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-------chhHHHHHHHHHHHHhc-CH
Confidence 99999887766666532 22 23346677888999999999999887543 45677888888888875 34
Q ss_pred HHHHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHHcCCHHHHHH
Q 048807 387 EEALGLIEQMRLRLQKGCMP-------NAVTYNCLINGFCKSGNIEKGLE 429 (757)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~ 429 (757)
++-.+.++..- ..-.-| ....|.-++-.|++-.+++.|..
T Consensus 279 eKlmEHlklf~---sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 279 QKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp THHHHHHTTSS---SSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHH---HhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 44443333221 111111 34458888888888888887753
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.77 E-value=0.83 Score=38.63 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 048807 561 KKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVP 616 (757)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 616 (757)
.+++++|.++|+.+.+.+ ..=...|......-.+.|++..|.+++.+.+..+.+|
T Consensus 73 i~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 366777777777765542 2225555555555666777777777777777665443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.98 E-value=9.7 Score=37.10 Aligned_cols=81 Identities=9% Similarity=-0.041 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCHHHHH
Q 048807 476 ANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQA---GRMNDASLVVSKLKEAGFRPDIVCYN 552 (757)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~ 552 (757)
-++.....+...|.+.|++.+|...|-.-. ..+...+..++.-+.+. |...++- ...-.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHH
Confidence 367778888888888888888887764111 11344555555444443 4443322 11112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 048807 553 HLISGFCKKKMLDKAYEVLQEME 575 (757)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~ 575 (757)
++ -.|.-.|+...|..+|+...
T Consensus 194 aV-L~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 LV-FNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HH-HHHHHTTBHHHHHHHHHHHH
T ss_pred HH-HHHHHhcCHHHHHHHHHHHH
Confidence 22 23455678888888777654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.43 E-value=0.81 Score=37.64 Aligned_cols=83 Identities=8% Similarity=-0.081 Sum_probs=52.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHCCCCC--ccchHHHHHHHHHhcCChhHH
Q 048807 274 KTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKR---MNQLFTEMKENDIEP--SVVTFGTIINRLCKLYRADEA 348 (757)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A 348 (757)
.+..+.+-|......|. ++..+-..+..++.+..+... ++.+++++.+.+ .| .......|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555555555444 466666667777777665555 777777777654 22 223344455677788888888
Q ss_pred HHHHHHHHhC
Q 048807 349 LEVFEKMIAG 358 (757)
Q Consensus 349 ~~~~~~~~~~ 358 (757)
++.++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888774
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.20 E-value=1.1 Score=36.81 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 048807 660 LIDSLCKNNQVELALSLMEEMKV 682 (757)
Q Consensus 660 li~~~~~~g~~~~A~~~~~~m~~ 682 (757)
|.-++.+.|++++|.+.++.+++
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444444444444444444444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.13 E-value=2.6 Score=36.40 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=63.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHH
Q 048807 624 LIHAFCVNGHVDEAMKIFKELSSSSNVSPNT-------VIYNILIDSLCKNNQVELALSLMEEMKV--KEVRPNTNTYNA 694 (757)
Q Consensus 624 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ 694 (757)
-+..+...|.++.|+-+.+.+....+..|+. .++..+++++...|++.+|...|++.+. +.+..+..+...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3455666777777777666654422233331 2455666777777777777777777653 111111111111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhchhccCC
Q 048807 695 MFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGYAVSAAP 756 (757)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 756 (757)
+. ....... .....++...-.-+..++.+.|+.++|...++.+|.+.++
T Consensus 106 ~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt 154 (167)
T 3ffl_A 106 TG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT 154 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC
T ss_pred cc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC
Confidence 10 0000000 0012233444455777888889999999999998877654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.10 E-value=10 Score=45.04 Aligned_cols=129 Identities=13% Similarity=0.136 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 048807 445 TLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANA----VTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLI 520 (757)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 520 (757)
-|..++..+.+.+.++.+.++-..+++.....+. ..|..+...+...|++++|...+-.+.... .-......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHHH
Confidence 3555666666666666666666555543222121 145566666667777777766666555442 2334455555
Q ss_pred HHHHhcCC------------hhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 048807 521 SGLCQAGR------------MNDASLVVSKLKEA--GFRPDIVCYNHLISGFCKKKMLDKAYE-VLQEME 575 (757)
Q Consensus 521 ~~~~~~g~------------~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~ 575 (757)
..++..|+ .++..+++....+. .+...+.-|..|-..+...|++..|-. +|+.+.
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 55554443 34444444332221 111122345555566667777765544 455544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.66 E-value=2.6 Score=46.74 Aligned_cols=128 Identities=20% Similarity=0.074 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHC------CCCCccc---
Q 048807 262 LTQLITRFCRKGK-TDEAWDVLHVLMKFDAPLEAASCNALLNALGREGD-FKRMNQLFTEMKEN------DIEPSVV--- 330 (757)
Q Consensus 262 ~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~------g~~p~~~--- 330 (757)
...|+..+...|+ ++.|..+|+++.+.++..+.....+++..+.+.++ --+|.+++.+.++. ..++...
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445555555566 58899999999887644333333444444433332 22455555554421 1122111
Q ss_pred --------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 331 --------TFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 331 --------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
....-...+...|+++-|+++-.+.+... |.+-.+|..|..+|.+.|+++.|+-.+..+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-------PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-------LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-------chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11112344567899999999999998863 667899999999999999999999999887
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.05 E-value=8 Score=45.95 Aligned_cols=211 Identities=15% Similarity=0.231 Sum_probs=118.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 376 LIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR 455 (757)
Q Consensus 376 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (757)
++..+.+.+..+-|.++.... +.+......+..+|...|++++|.+.|.+.-. |+..+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~--------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~--------- 879 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL--------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF--------- 879 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC---------
T ss_pred HHHHHHHhhhHHHHHHHhhhc--------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh---------
Confidence 444555566666555544433 33444445556666777777777777765432 111111000
Q ss_pred cCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCh
Q 048807 456 HGRINSAVEFFQEVTRKG--LCANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADS----VVYFTLISGLCQAGRM 529 (757)
Q Consensus 456 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~ 529 (757)
..... +..+.... ...-..-|..++..+-+.+.++.+.+.-+..++...+.+. ..|..+...+...|++
T Consensus 880 -~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~y 954 (1139)
T 4fhn_B 880 -AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKF 954 (1139)
T ss_dssp -SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred -hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCH
Confidence 00000 11111111 1123455777888888999999999888777665322222 2578889999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH------------HHHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHH
Q 048807 530 NDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKML------------DKAYEVLQEMED-I-GMTPNSVTYNTLISFLSK 595 (757)
Q Consensus 530 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~------------~~A~~~~~~~~~-~-~~~~~~~~~~~li~~~~~ 595 (757)
++|...+-.+..... -......|+...|..|.. ++..+++..-.+ . .......-|..|-.-+..
T Consensus 955 e~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~ 1032 (1139)
T 4fhn_B 955 DAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYK 1032 (1139)
T ss_dssp GGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhc
Confidence 999999888876533 355667777777765544 444445433221 1 111112235555556667
Q ss_pred cCCHHHHHH-HHHHHHh
Q 048807 596 SGNFSAARR-VLKKMVK 611 (757)
Q Consensus 596 ~g~~~~A~~-~~~~m~~ 611 (757)
.|++.+|-. +|+.+.+
T Consensus 1033 r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 1033 HQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHTTSCHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHH
Confidence 787776654 4555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.89 E-value=2.1 Score=47.42 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=26.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHhhch
Q 048807 699 LRQKNMLDKAFKLMDRMIEHACHPD-YISMEILTEWLSEAGQTEKLKKFVQGYA 751 (757)
Q Consensus 699 ~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (757)
|...|+++-|+++.++++. +.|+ ..+|..|..+|...|+++.|.=.++.+|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3344555555555555554 2332 3555555555555555555555555554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.76 E-value=3 Score=32.33 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048807 669 QVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILT 731 (757)
Q Consensus 669 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 731 (757)
+.=+..+-++.+....+.|++....+.+.+|.+.+++..|+++++-...+ ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34456666667777777888888888888888888888888888877665 344445666665
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.52 E-value=29 Score=35.96 Aligned_cols=95 Identities=13% Similarity=0.186 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc---CCCCCC--HHH
Q 048807 587 NTLISFLSKSGNFSAARRVLKKMVKE--GLVPT---VVTYGALIHAFCVNGHVDEAMKIFKELSSS---SNVSPN--TVI 656 (757)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~p~--~~~ 656 (757)
..|...|...|++.+|..++..+... |..+. +..+...+..|...+++.+|..++.++... ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555556666666666666655432 11111 233444455566666666666666554210 111111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 048807 657 YNILIDSLCKNNQVELALSLMEEMK 681 (757)
Q Consensus 657 ~~~li~~~~~~g~~~~A~~~~~~m~ 681 (757)
+...+..+...+++.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555556666666666666666554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.83 E-value=12 Score=31.43 Aligned_cols=72 Identities=10% Similarity=0.064 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048807 651 SPNTVIYNILIDSLCKNNQ---VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 651 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
.|+..+--.+.+++.+..+ ..+++.++++....+..-.....-.|.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 3555555556666666553 345666666666532111233344455566777777777777777765 35543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.60 E-value=26 Score=34.40 Aligned_cols=81 Identities=11% Similarity=0.129 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048807 476 ANAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLI 555 (757)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 555 (757)
-|+.....+...|.+.+++.+|...|- . |..+....+..++.-+.+.+...++ |...-.+++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHH
Confidence 466777778888888888888887772 2 2222335565555444444332222 222222222
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 048807 556 SGFCKKKMLDKAYEVLQEME 575 (757)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~ 575 (757)
.|...++...|..+++...
T Consensus 196 -~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 196 -PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -HHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHH
Confidence 3555677888877665554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.09 E-value=26 Score=34.04 Aligned_cols=80 Identities=10% Similarity=-0.000 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHH
Q 048807 617 TVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKN---NQVELALSLMEEMKVKEVRPNTNTYN 693 (757)
Q Consensus 617 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~ 693 (757)
+......+...|.+.|++.+|...|-. +...+...+..++.-+.+. |...++--++-++
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~-----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra------------- 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML-----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL------------- 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT-----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------------
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh-----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHH-------------
Confidence 677788888888888888888887742 1111334444444333333 4443332222221
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 048807 694 AMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 694 ~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
+ --|.-.|+...|..+++...
T Consensus 195 -V-L~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 -V-FNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp -H-HHHHHTTBHHHHHHHHHHHH
T ss_pred -H-HHHHHhcCHHHHHHHHHHHH
Confidence 1 22445567777777766654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.56 E-value=2.2 Score=43.61 Aligned_cols=70 Identities=13% Similarity=0.007 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCccch
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKE-----NDIEPSVVT 331 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 331 (757)
+...++..+...|++++|...+..+...++. +...|..++.+|.+.|+..+|++.|++..+ .|+.|...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4456788899999999999999999887755 888999999999999999999999998754 388887654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.00 E-value=7.7 Score=32.05 Aligned_cols=71 Identities=10% Similarity=0.058 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 048807 652 PNTVIYNILIDSLCKNNQ---VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY 724 (757)
Q Consensus 652 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 724 (757)
|...+--.+..++.+..+ ..+++.++++....+..-....+-.|.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 555555556666666654 445777777776543111244555566677778888888888877775 46654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.54 E-value=13 Score=30.60 Aligned_cols=62 Identities=11% Similarity=0.149 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 048807 670 VELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTE 732 (757)
Q Consensus 670 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 732 (757)
.=+..+-++.+....+.|++....+.+.+|.+-+++..|+++++-...+ ..+...+|..++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3355666667777778899999999999999999999999999988775 4455566777763
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.44 E-value=3.8 Score=41.82 Aligned_cols=69 Identities=12% Similarity=-0.015 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 048807 551 YNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVK-----EGLVPTVVT 620 (757)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 620 (757)
...++..+...|++++|...+..+.... +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445566667777777777777766654 55667777777777777777777777776543 266666554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=84.26 E-value=38 Score=34.27 Aligned_cols=167 Identities=10% Similarity=0.007 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-C---CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHhhH-
Q 048807 443 VVTLNTLVDGMCRHGRINSAVEFFQEVTRKGL-C---ANAVTYTILITAFCNV-NNFQEAIKWFDDMSRAGCSADSVVY- 516 (757)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~- 516 (757)
......|...|.+.|+.++..+++......=. - -.......+++.+... +..+.-.++..+..+.. ..+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34566677778888888777777766543200 0 1222344555555543 23344444444443321 0011222
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH
Q 048807 517 -----FTLISGLCQAGRMNDASLVVSKLKEAGFRPD-----IVCYNHLISGFCKKKMLDKAYEVLQEMEDI--GMTPNSV 584 (757)
Q Consensus 517 -----~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 584 (757)
..++..|...|++.+|..++..+.+.--..| ...+..-+..|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2456666677777777666666554311111 123444455666666666666666655422 1112322
Q ss_pred HHHH----HHHHHH-HcCCHHHHHHHHHHHH
Q 048807 585 TYNT----LISFLS-KSGNFSAARRVLKKMV 610 (757)
Q Consensus 585 ~~~~----li~~~~-~~g~~~~A~~~~~~m~ 610 (757)
.... -+-.+. ..+++.+|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2111 112233 4566666666655543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.24 E-value=9.7 Score=32.87 Aligned_cols=126 Identities=9% Similarity=0.058 Sum_probs=69.8
Q ss_pred CCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 048807 578 GMTPNSVTYN--TLISFLSKSGNFSAARRVLKKMVKE-GLVPTV-------VTYGALIHAFCVNGHVDEAMKIFKELSSS 647 (757)
Q Consensus 578 ~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 647 (757)
|+.|....|+ .-+..+...|.++.|+-+.+.++.. +..|+. .++..+.+++...|++..|...|++..+.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4444444333 3466678899999999988876542 123442 35677888999999999999999997552
Q ss_pred CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 648 SNVSPNTV-IYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMI 716 (757)
Q Consensus 648 ~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 716 (757)
...-+... +...+. -...... ......+.+.---+..||.+.|++++|+.+++...
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 22222211 111110 0000000 01122334444447788999999999999988753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 757 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.29 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.28 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.15 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.09 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.08 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.08 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.04 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.65 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.59 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.58 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.56 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.51 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.5 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.5 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.5 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.43 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.33 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.24 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.22 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.16 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.14 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.11 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.07 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.07 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.05 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.0 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.0 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.98 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.97 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.93 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.9 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.84 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.78 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.78 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.67 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.66 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.48 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.44 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.43 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.31 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.3 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.28 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.63 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.53 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.31 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.21 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.2 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.92 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.83 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.31 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.3 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.55 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.73 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4.7e-22 Score=207.61 Aligned_cols=383 Identities=13% Similarity=0.060 Sum_probs=318.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 335 IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 335 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
+...+.+.|++++|++.++++++.. |.+..++..+...|.+.|++++|...++++.. ..+.+..+|..+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~~~a~~~l 73 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK----QNPLLAEAYSNL 73 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHH
Confidence 4566778899999999999998864 55788899999999999999999999999842 235678899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 048807 415 INGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNF 494 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 494 (757)
+..|.+.|++++|++.+....+.... +..............+....+............. ...............+..
T Consensus 74 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 151 (388)
T d1w3ba_ 74 GNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRL 151 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCH
T ss_pred HHHhhhhccccccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccchh
Confidence 99999999999999999999887433 5555666666666677777777666666555443 444555566777788889
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 495 QEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEM 574 (757)
Q Consensus 495 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 574 (757)
..+...+.+..... +.+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++.
T Consensus 152 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 229 (388)
T d1w3ba_ 152 EEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRA 229 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred hhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHh
Confidence 99998888887664 55677888889999999999999999999887642 36778999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCH
Q 048807 575 EDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNT 654 (757)
Q Consensus 575 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 654 (757)
.+.+ +.+...+..+...+.+.|++++|...|+++++.. +.+..++..+...+...|++++|.+.++.... ..+.+.
T Consensus 230 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~ 305 (388)
T d1w3ba_ 230 LSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHA 305 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccc
Confidence 8876 5677888889999999999999999999999864 33678899999999999999999999999887 345677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 048807 655 VIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPD-YISMEILTEW 733 (757)
Q Consensus 655 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 733 (757)
..+..++..+.+.|++++|++.|++.++.. +-+..++..++.++.+.|++++|++.|+++++ +.|+ ...|..|+..
T Consensus 306 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~ 382 (388)
T d1w3ba_ 306 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT 382 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 889999999999999999999999998752 33567889999999999999999999999986 5675 5789999999
Q ss_pred HHhcCC
Q 048807 734 LSEAGQ 739 (757)
Q Consensus 734 ~~~~g~ 739 (757)
|.+.||
T Consensus 383 ~~~~~D 388 (388)
T d1w3ba_ 383 LKEMQD 388 (388)
T ss_dssp HHHTCC
T ss_pred HHHcCC
Confidence 988775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4.3e-22 Score=207.94 Aligned_cols=383 Identities=15% Similarity=0.112 Sum_probs=221.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCC
Q 048807 265 LITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYR 344 (757)
Q Consensus 265 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 344 (757)
+...+.+.|++++|++.++++.+..+. +..++..+...|.+.|++++|.+.|+++++.+ +.+..+|..+...|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 344555666666666666666665433 55566666666666666666666666665543 2234455555566666666
Q ss_pred hhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCH
Q 048807 345 ADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNI 424 (757)
Q Consensus 345 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (757)
+++|+..+....+.. +.+...+..........+....+.......
T Consensus 83 ~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 127 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-------PDFIDGYINLAAALVAAGDMEGAVQAYVSA---------------------------- 127 (388)
T ss_dssp HHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHH----------------------------
T ss_pred ccccccccccccccc-------cccccccccccccccccccccccccccccc----------------------------
Confidence 666666666655543 333333333343444444444333333332
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 425 EKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDM 504 (757)
Q Consensus 425 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (757)
..... ................+....+...+.+....... +...+..+...+...|++++|...+++.
T Consensus 128 ----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 195 (388)
T d1w3ba_ 128 ----------LQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp ----------HHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ----------ccccc-ccccccccccccccccchhhhhHHHHHHhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHH
Confidence 22211 12222333333334444444444444444433221 3444455555555555556665555555
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 048807 505 SRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSV 584 (757)
Q Consensus 505 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 584 (757)
++.. +.+..++..+...+...|++++|...++.....+ ..+...+..+...+.+.|++++|...|+++.+.. +.+..
T Consensus 196 l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 272 (388)
T d1w3ba_ 196 VTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPD 272 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHH
T ss_pred HHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 5442 3344555566666666666666666666655543 2245556666666777777777777777766654 44566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 048807 585 TYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSL 664 (757)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~ 664 (757)
++..+...+...|++++|.+.++...... +.+...+..+...+...|++++|+..|++..+ ..+.+..++..++.+|
T Consensus 273 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~ 349 (388)
T d1w3ba_ 273 AYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVL 349 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 67777777777777777777777766642 34566677777777777777777777777665 1223455677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCC
Q 048807 665 CKNNQVELALSLMEEMKVKEVRP-NTNTYNAMFKGLRQKNM 704 (757)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 704 (757)
.+.|++++|...|++.++. .| +...|..++.+|.+.||
T Consensus 350 ~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 350 QQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 7777777777777777763 34 45677777777777664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3.4e-13 Score=135.95 Aligned_cols=237 Identities=12% Similarity=0.012 Sum_probs=158.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcC
Q 048807 264 QLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLY 343 (757)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 343 (757)
..+..+.+.|++++|+..|+++++.+|. +..+|..++.+|...|++++|...|.+.++.. +-+...|..++..|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 3567788999999999999999998765 78999999999999999999999999999874 345778888999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCcccccC--------CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 048807 344 RADEALEVFEKMIAGKETAEISVEP--------DVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLI 415 (757)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 415 (757)
++++|.+.+++++...+........ +.......+..+...+.+.+|.+.+.+... ......+...+..+.
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--~~p~~~~~~~~~~l~ 179 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR--LDPTSIDPDVQCGLG 179 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHH--HhhcccccccchhhH
Confidence 9999999999998754211000000 000011122233344555666666655531 122233455566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 048807 416 NGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQ 495 (757)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 495 (757)
..+...|++++|+..|++..+.... +..+|..+...+.+.|++++|.+.|+++++.... +..+|..+..+|.+.|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 180 VLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHH
Confidence 6666666666666666666654322 4556666666666666666666666666654322 4556666666666666666
Q ss_pred HHHHHHHHHHH
Q 048807 496 EAIKWFDDMSR 506 (757)
Q Consensus 496 ~A~~~~~~m~~ 506 (757)
+|+..|++.++
T Consensus 258 ~A~~~~~~al~ 268 (323)
T d1fcha_ 258 EAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=8e-13 Score=133.13 Aligned_cols=92 Identities=11% Similarity=-0.021 Sum_probs=52.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 048807 335 IINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCL 414 (757)
Q Consensus 335 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 414 (757)
....+.+.|++++|+..|+++++.+ |.+..+|..++.+|...|++++|...|++... ..+.+...|..+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l 93 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLE----LKPDNQTALMAL 93 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc----cccccccccccc
Confidence 4445555666666666666666543 34455566666666666666666666665531 123345555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Q 048807 415 INGFCKSGNIEKGLELFHLMKQE 437 (757)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~ 437 (757)
+..|...|++++|.+.++++...
T Consensus 94 a~~~~~~~~~~~A~~~~~~~~~~ 116 (323)
T d1fcha_ 94 AVSFTNESLQRQACEILRDWLRY 116 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccchhhHHHh
Confidence 66666666666666666655543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=3.9e-10 Score=111.95 Aligned_cols=217 Identities=9% Similarity=0.044 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCccchHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREG-DFKRMNQLFTEMKENDIEPSVVTFGTIIN 337 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 337 (757)
..+++.+...+.+.+.+++|+++++++++.+|. +..+|+....++...| ++++|+..+++.++.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 446777888889999999999999999999866 8899999999998876 5899999999998875 456888999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 048807 338 RLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLING 417 (757)
Q Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (757)
.+.+.|++++|++.++++++.+ +.+..+|..+...+.+.|++++|++.++++.. -.+.+...|+.+...
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-------p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~----~~p~n~~a~~~r~~~ 189 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK----EDVRNNSVWNQRYFV 189 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH----HCTTCHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHhhhhhhh-------hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HCCccHHHHHHHHHH
Confidence 9999999999999999999975 67899999999999999999999999999852 246678889988887
Q ss_pred HHHcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 048807 418 FCKSGN------IEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCA-NAVTYTILITAFCN 490 (757)
Q Consensus 418 ~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 490 (757)
+.+.+. +++|++.+.+.++... .+...|..+...+. ....+++.+.++...+....+ +...+..++..|..
T Consensus 190 l~~~~~~~~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 190 ISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHccccchhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 777665 6789999988888643 36777777766554 444677888888776654332 45556666666543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.1e-09 Score=108.57 Aligned_cols=195 Identities=8% Similarity=0.076 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 048807 446 LNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVN-NFQEAIKWFDDMSRAGCSADSVVYFTLISGLC 524 (757)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 524 (757)
++.+...+.+.+.+++|+++++++++..+. +..+|+....++...| ++++|+..+++.++.. +.+..+|..+...+.
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHH
Confidence 344444445555555555555555554332 4445555555555444 3555555555555443 334555555555555
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------
Q 048807 525 QAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGN------ 598 (757)
Q Consensus 525 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 598 (757)
+.|++++|+..+.++.+... .+...|..+...+.+.|++++|.+.++++++.+ +.+...|+.+...+.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhh
Confidence 55555555555555555422 245555555555555555555555555555554 3344555555444444333
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 048807 599 FSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSS 646 (757)
Q Consensus 599 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 646 (757)
+++|++.+.++++.. +.+...|+.+...+.. ...+++...++...+
T Consensus 202 ~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 202 LEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred hHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 345555555555532 1234444444433322 223444444444433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1.3e-09 Score=110.41 Aligned_cols=284 Identities=10% Similarity=-0.048 Sum_probs=192.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhccCCCc------chHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHH
Q 048807 150 SATLLIRFFGKVSMYDYSLLVYNELDNNLRNT------HVRNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDI 223 (757)
Q Consensus 150 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 223 (757)
.......++...|++++|+..++++....|+. ..++.++.+|...|++++|+..|++........ ++.
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~----- 87 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-DVW----- 87 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-cch-----
Confidence 34445677788899999999998876543332 357788999999999999999999886631100 000
Q ss_pred HHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC---CHHH
Q 048807 224 VFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLTQLITRFCRKGKTDEAWDVLHVLMKF----DAPL---EAAS 296 (757)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~ 296 (757)
......+..+...+...|++..|...+...... .... ....
T Consensus 88 --------------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~ 135 (366)
T d1hz4a_ 88 --------------------------------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 135 (366)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHH
Confidence 011234556777888999999999988877642 1111 1245
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCC----CccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhH
Q 048807 297 CNALLNALGREGDFKRMNQLFTEMKENDIE----PSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVII 372 (757)
Q Consensus 297 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
+..+...+...|+++.+...+......... ....++......+...++..++...+.+............+.....
T Consensus 136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 215 (366)
T d1hz4a_ 136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 215 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence 667788899999999999999988764321 1233455566677889999999998887765321111111222445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHH
Q 048807 373 FNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQE----GVTPN-VVTLN 447 (757)
Q Consensus 373 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 447 (757)
+..+...+...|++++|...+++...............+..+...+...|++++|.+.++++... +..|+ ..++.
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 295 (366)
T d1hz4a_ 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 295 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHH
Confidence 67778888899999999999887631101111222455667888899999999999998887632 33332 34667
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 048807 448 TLVDGMCRHGRINSAVEFFQEVTR 471 (757)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~~~~ 471 (757)
.+...|.+.|++++|.+.+++.++
T Consensus 296 ~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 296 LLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777888888888888888877654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=2.2e-08 Score=101.02 Aligned_cols=266 Identities=10% Similarity=0.007 Sum_probs=154.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--CC-H
Q 048807 481 YTILITAFCNVNNFQEAIKWFDDMSRAGC-SA----DSVVYFTLISGLCQAGRMNDASLVVSKLKEA----GFR--PD-I 548 (757)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~--~~-~ 548 (757)
+..+...|...|++++|+..|++..+... .+ ....+..+...+...|++..+...+...... +.. +. .
T Consensus 54 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~ 133 (366)
T d1hz4a_ 54 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 133 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHH
Confidence 33344444555555555555544433110 00 1123334444555556666665555544321 111 11 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC----H
Q 048807 549 VCYNHLISGFCKKKMLDKAYEVLQEMEDIG----MTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKE--GLVPT----V 618 (757)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~ 618 (757)
..+..+...+...|+++.+...+....... .......+..+...+...++..++...+.+.... ..... .
T Consensus 134 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 213 (366)
T d1hz4a_ 134 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 213 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 244556667777788888877777765432 1223345555666677778888887777665532 11111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHH
Q 048807 619 VTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSP--NTVIYNILIDSLCKNNQVELALSLMEEMKV----KEVRPN-TNT 691 (757)
Q Consensus 619 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~ 691 (757)
..+..+...+...|++++|...++...+.....+ ....+..+...+...|++++|...++++.. .+..|+ ...
T Consensus 214 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 293 (366)
T d1hz4a_ 214 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 293 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHH
Confidence 3455566677788888888888887765211111 234566778888888999999988888763 233343 346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 048807 692 YNAMFKGLRQKNMLDKAFKLMDRMIEH----ACHP----DYISMEILTEWLSEAGQTEKLKKF 746 (757)
Q Consensus 692 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p----~~~~~~~l~~~~~~~g~~~~A~~~ 746 (757)
+..+..+|.+.|++++|.+.+++.++. |... ....+..++..+...|+.+++.+.
T Consensus 294 ~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 294 LLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 777888888999999999998887653 2221 223455566677777777766543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=1.6e-10 Score=116.50 Aligned_cols=264 Identities=7% Similarity=-0.004 Sum_probs=182.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHH----------HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 048807 459 INSAVEFFQEVTRKGLCANAVTYTILITA----------FCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGR 528 (757)
Q Consensus 459 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 528 (757)
.++|+++++++++..+. +...|+..-.. +...|++++|+..+++.++.. +.+...|..+..++...++
T Consensus 45 ~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhcc
Confidence 35666666666654322 33344332222 233455778888888888764 5567777777777776654
Q ss_pred --hhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048807 529 --MNDASLVVSKLKEAGFRPDIVCYN-HLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRV 605 (757)
Q Consensus 529 --~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 605 (757)
+++|...+..+.+.... +...+. .....+...+.+++|...++++++.+ +-+...|+.+...+.+.|++++|...
T Consensus 123 ~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 78888888888876432 455544 45567777899999999999988886 56788888899999999988887766
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 048807 606 LKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEV 685 (757)
Q Consensus 606 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 685 (757)
+.+..+. .|+ ...+...+...+..+++...+..... ..+++...+..++..+...|+.++|...+.+.....
T Consensus 201 ~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 272 (334)
T d1dcea1 201 GRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN- 272 (334)
T ss_dssp CSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred HHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-
Confidence 6554442 121 12233445666777888888887776 223445566777888888899999999999887642
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh
Q 048807 686 RPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEILTEWLSE 736 (757)
Q Consensus 686 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~ 736 (757)
+.+..+|..++.++...|++++|+++++++++ +.|+. ..|..|...+..
T Consensus 273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHHHHHHHhH
Confidence 22456778889999999999999999999987 47754 566667666554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=1.6e-08 Score=100.01 Aligned_cols=189 Identities=13% Similarity=0.116 Sum_probs=145.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 048807 527 GRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVL 606 (757)
Q Consensus 527 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 606 (757)
+..++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+++++.........|...+..+.+.|+++.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888888888765555677788888888899999999999999887643333557888888888999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 048807 607 KKMVKEGLVPTVVTYGALIHA-FCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKE- 684 (757)
Q Consensus 607 ~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 684 (757)
+++++.+. .+...|...+.. +...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|++++|..+|++.+...
T Consensus 158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 99987643 244444444433 34468899999999998883 44567789999999999999999999999988743
Q ss_pred CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 048807 685 VRPN--TNTYNAMFKGLRQKNMLDKAFKLMDRMIEH 718 (757)
Q Consensus 685 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 718 (757)
..|+ ...|...+..-...|+.+.+.++++++.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3332 457888888778889999999999988764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=2.5e-09 Score=102.97 Aligned_cols=129 Identities=15% Similarity=-0.017 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
..++..+..+|.+.|++++|++.|+++++.++. ++.+|+.+..+|.+.|++++|++.|+++++.. +.+..++..+...
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHH
Confidence 346777888999999999999999999988765 78899999999999999999999999998874 3456678888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
|...|++++|+..|++.++.. +.+......+...+.+.+..+.+..+....
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDD-------PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 165 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhc-------cccHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 999999999999999988864 445555555555556666655555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=3.2e-08 Score=97.77 Aligned_cols=185 Identities=9% Similarity=0.054 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 425 EKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDM 504 (757)
Q Consensus 425 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (757)
++|..+|++.++...+.+...+...+....+.|+++.|..+|+++++........+|..++....+.|+.+.|.++|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44445555544432222334444445555555555555555555554433222334555555555555555555555555
Q ss_pred HHcCCCCCHhhHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC-
Q 048807 505 SRAGCSADSVVYFTLISG-LCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYEVLQEMEDIG-MTP- 581 (757)
Q Consensus 505 ~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~- 581 (757)
.+.+ +.+...|...+.. +...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+++.|..+|++..+.. ..|
T Consensus 161 l~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 5443 2222223222222 223455566666666655542 2245556666666666666666666666665542 122
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 048807 582 -NSVTYNTLISFLSKSGNFSAARRVLKKMVK 611 (757)
Q Consensus 582 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (757)
....|...+..-...|+.+.+.++++++.+
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 134566666655666666666666666554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=4.4e-10 Score=113.16 Aligned_cols=276 Identities=7% Similarity=-0.038 Sum_probs=127.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----------cCChhHHHHHHHHHHHCCCCCccchH
Q 048807 263 TQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGR----------EGDFKRMNQLFTEMKENDIEPSVVTF 332 (757)
Q Consensus 263 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~A~~~~~~m~~~g~~p~~~~~ 332 (757)
..++...-+.+..++|+++++++++.+|. +...|+..-..+.. .|++++|+.+++...+.+ +.+...|
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~ 110 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 110 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence 33333333344457888888888887654 56666554433322 222444555555544432 2233334
Q ss_pred HHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCcccccCCHhHHHH-HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHH
Q 048807 333 GTIINRLCKLY--RADEALEVFEKMIAGKETAEISVEPDVIIFNT-LIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAV 409 (757)
Q Consensus 333 ~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 409 (757)
..+..++...+ +.++|+..+.++++.+ +++...+.. ....+...+..++|+..++.+ ....+.+..
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~----i~~~p~~~~ 179 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSL----ITRNFSNYS 179 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT----TTTTCCCHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhC-------chhhhhhhhHHHHHHHhccccHHHHHHHHHH----HHcCCCCHH
Confidence 44444443333 2445555555554432 233333322 223333444455555444444 222233444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 048807 410 TYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITAFC 489 (757)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 489 (757)
.|+.+...+.+ .|++++|...+....+. ... .......+.
T Consensus 180 a~~~l~~~~~~-----------------------------------~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~~ 219 (334)
T d1dcea1 180 SWHYRSCLLPQ-----------------------------------LHPQPDSGPQGRLPENV----LLK-ELELVQNAF 219 (334)
T ss_dssp HHHHHHHHHHH-----------------------------------HSCCCCSSSCCSSCHHH----HHH-HHHHHHHHH
T ss_pred HHHHHHHHHHH-----------------------------------hcCHHHHHHHHHHhHHh----HHH-HHHHHHHHH
Confidence 44444444444 44444443333222221 000 011122233
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048807 490 NVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQAGRMNDASLVVSKLKEAGFRPDIVCYNHLISGFCKKKMLDKAYE 569 (757)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 569 (757)
..+..+++...+....... +++...+..++..+...|+.++|...+.+..+..+ .+..++..++..|...|++++|.+
T Consensus 220 ~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~ 297 (334)
T d1dcea1 220 FTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQ 297 (334)
T ss_dssp HHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHH
T ss_pred HhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444445555555544432 33344444455555555566666666655554421 133455556666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHH
Q 048807 570 VLQEMEDIGMTPNSVTYNTLISFLS 594 (757)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~li~~~~ 594 (757)
.++++.+.. |.+..-|..|...+.
T Consensus 298 ~~~~ai~ld-P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 298 YFSTLKAVD-PMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHC-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHC-cccHHHHHHHHHHHh
Confidence 666666553 223344444444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=1.7e-09 Score=104.16 Aligned_cols=218 Identities=11% Similarity=-0.070 Sum_probs=132.2
Q ss_pred ChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHH
Q 048807 274 KTDEAWDVLHVLMKFDAPL---EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALE 350 (757)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 350 (757)
+.+.|+.-+++........ ...+|..+...|.+.|++++|.+.|++.++.. +.+..+|..+..++.+.|++++|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 3445555556665542211 23577778888888899999999998888864 4467778888888888899999999
Q ss_pred HHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 048807 351 VFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLEL 430 (757)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 430 (757)
.|+++++.+ +.+..++..+...|...|++++|.+.|++... ..+.+......+..++.+.+..+.+..+
T Consensus 93 ~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (259)
T d1xnfa_ 93 AFDSVLELD-------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ----DDPNDPFRSLWLYLAEQKLDEKQAKEVL 161 (259)
T ss_dssp HHHHHHHHC-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hhhHHHHHH-------hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh----hccccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 998888864 45567788888888888888888888888742 2244555555555556666666655555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048807 431 FHLMKQEGVTPNVVTLNTLVDGMCRHGR----INSAVEFFQEVTRKGLCANAVTYTILITAFCNVNNFQEAIKWFDDMSR 506 (757)
Q Consensus 431 ~~~m~~~g~~p~~~~~~~li~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (757)
......... +...+. ++..+..... .+.+...+....... +....+|..+...|...|++++|.+.|++.+.
T Consensus 162 ~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 162 KQHFEKSDK--EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp HHHHHHSCC--CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhhccch--hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555554322 221222 2222211111 111111111111100 00123455566667777777777777776665
Q ss_pred c
Q 048807 507 A 507 (757)
Q Consensus 507 ~ 507 (757)
.
T Consensus 238 ~ 238 (259)
T d1xnfa_ 238 N 238 (259)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.65 E-value=4.2e-05 Score=72.68 Aligned_cols=224 Identities=12% Similarity=0.042 Sum_probs=137.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCccchHH
Q 048807 258 NAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGR----EGDFKRMNQLFTEMKENDIEPSVVTFG 333 (757)
Q Consensus 258 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 333 (757)
|+..+..|...+.+.|++++|++.|++..+.| +..++..|...|.. ..++..|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45567777888888899999999999988875 66777777777776 568888888888888766 333344
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhcCCCC
Q 048807 334 TIINRLCK----LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCK----VGKQEEALGLIEQMRLRLQKGCM 405 (757)
Q Consensus 334 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 405 (757)
.+...+.. ..+.+.|...++...+.+ .......+...+.. ......|...+.... ..
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g---------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~------~~ 139 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC------DL 139 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH------HT
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhh---------hhhHHHhhcccccCCCcccchhHHHHHHhhhhh------cc
Confidence 44444432 456778888888877655 23333334333332 334556666665543 13
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCC
Q 048807 406 PNAVTYNCLINGFCK----SGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR----HGRINSAVEFFQEVTRKGLCAN 477 (757)
Q Consensus 406 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 477 (757)
.+...+..|...|.. ..+...+...++...+.| +..+...+...|.. ..++++|..+|.+..+.| +
T Consensus 140 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~ 213 (265)
T d1ouva_ 140 NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---N 213 (265)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---C
T ss_pred cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---C
Confidence 456666666666665 345566666666666544 44555555555544 345666666666666654 3
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 048807 478 AVTYTILITAFCN----VNNFQEAIKWFDDMSRAG 508 (757)
Q Consensus 478 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 508 (757)
+..+..|..+|.+ ..+.++|.+.|++..+.|
T Consensus 214 ~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 214 GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 4445555555543 225556666666665554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=6e-07 Score=73.51 Aligned_cols=106 Identities=14% Similarity=0.122 Sum_probs=92.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcC
Q 048807 264 QLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLY 343 (757)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 343 (757)
.-.+.+.+.|++++|+..|+++++.++. +...|..+..+|.+.|++++|++.+.+.++.+ +.+...|..+..++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence 3567889999999999999999998765 89999999999999999999999999999986 567888999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHH
Q 048807 344 RADEALEVFEKMIAGKETAEISVEPDVIIFNTLID 378 (757)
Q Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 378 (757)
++++|+..|++.++.. |.+...+..+.+
T Consensus 86 ~~~~A~~~~~~a~~~~-------p~~~~~~~~l~~ 113 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHE-------ANNPQLKEGLQN 113 (117)
T ss_dssp CHHHHHHHHHHHHTTC-------TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-------CCCHHHHHHHHH
Confidence 9999999999999864 445555554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.58 E-value=9.9e-05 Score=69.98 Aligned_cols=222 Identities=11% Similarity=0.020 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 048807 480 TYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQ----AGRMNDASLVVSKLKEAGFRPDIVCYNHLI 555 (757)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 555 (757)
.+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+......+ +......+.
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 34444444445555555555555555443 44444444444443 334555555555544443 223333333
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048807 556 SGFCK----KKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK----SGNFSAARRVLKKMVKEGLVPTVVTYGALIHA 627 (757)
Q Consensus 556 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 627 (757)
..+.. ..+.+.|...++...+.| .......+...+.. ......|...+...... .+...+..|...
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~ 151 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSL 151 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhh---hhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhh
Confidence 33322 345566666666666554 22222223333322 33455666666665553 355556666666
Q ss_pred HHh----cCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048807 628 FCV----NGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCK----NNQVELALSLMEEMKVKEVRPNTNTYNAMFKGL 699 (757)
Q Consensus 628 ~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 699 (757)
|.. ..+...+...++...+ . .+......+...|.. ..+.++|...|++..+.| ++..+..|+..|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~-~---g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y 224 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 224 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred hccCCCcccccccchhhhhcccc-c---cccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence 654 3456666666666655 2 245555556655554 457888888888887765 455666677666
Q ss_pred HH----cCCHHHHHHHHHHHHHcCC
Q 048807 700 RQ----KNMLDKAFKLMDRMIEHAC 720 (757)
Q Consensus 700 ~~----~g~~~~A~~~~~~~~~~g~ 720 (757)
.+ ..+.++|.++|+++.+.|.
T Consensus 225 ~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 225 YNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HcCCCCccCHHHHHHHHHHHHHCcC
Confidence 54 2367788888888877663
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.7e-06 Score=78.00 Aligned_cols=124 Identities=15% Similarity=0.092 Sum_probs=61.2
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHc
Q 048807 304 LGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKV 383 (757)
Q Consensus 304 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 383 (757)
+...|++++|++.|.++. +|+..+|..+..+|...|++++|++.|++.++.+ +.+...|..+..+|.+.
T Consensus 15 ~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-------p~~~~a~~~~g~~~~~~ 83 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KHLAVAYFQRGMLYYQT 83 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-------hhhhhhHHHHHHHHHhh
Confidence 344455555555554321 2334444445555555555555555555555443 33444555555555555
Q ss_pred CCHHHHHHHHHHHHHhhcC---------CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 048807 384 GKQEEALGLIEQMRLRLQK---------GC--MP-NAVTYNCLINGFCKSGNIEKGLELFHLMKQEG 438 (757)
Q Consensus 384 g~~~~A~~~~~~~~~~~~~---------~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (757)
|++++|.+.|++....... +. .. ...++..+..++.+.|++++|.+.+....+..
T Consensus 84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 5555555555544210000 00 00 12345556666777777777777777766653
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=3e-06 Score=76.26 Aligned_cols=124 Identities=7% Similarity=-0.068 Sum_probs=94.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 048807 377 IDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRH 456 (757)
Q Consensus 377 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 456 (757)
...+...|++++|++.|.++. +|+..+|..+..+|...|++++|++.|++.++.+.. +...|..+..++.+.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~ 83 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQT 83 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhh
Confidence 556778889999988887652 567788888899999999999999999998887533 677888888888899
Q ss_pred CChHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 048807 457 GRINSAVEFFQEVTRKGLC--------------A-NAVTYTILITAFCNVNNFQEAIKWFDDMSRAG 508 (757)
Q Consensus 457 g~~~~A~~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 508 (757)
|++++|.+.|++.+..... . ...++..+..+|.+.|++++|.+.+....+..
T Consensus 84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999888887753111 0 12445566777778888888888877776653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.3e-06 Score=76.15 Aligned_cols=121 Identities=14% Similarity=0.024 Sum_probs=97.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK 341 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 341 (757)
+....+.|.+.|++++|+..|+++++.++. +...|..+...|...|++++|.+.|+++++.+ +.+..+|..++.++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 344677899999999999999999999865 89999999999999999999999999999875 4466889999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHH--HHcCCHHHHHH
Q 048807 342 LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGL--CKVGKQEEALG 391 (757)
Q Consensus 342 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~ 391 (757)
.|++++|...+++.++.. +.+...+..+..+. .+.+.+++|..
T Consensus 91 ~g~~~eA~~~~~~a~~~~-------p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVK-------PHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp TTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999864 34455555444332 23333444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=4e-06 Score=81.32 Aligned_cols=205 Identities=11% Similarity=0.003 Sum_probs=119.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC----CCCCc-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHH
Q 048807 301 LNALGREGDFKRMNQLFTEMKEN----DIEPS-VVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNT 375 (757)
Q Consensus 301 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (757)
...|...|++++|.+.|.++.+. +-+++ ..+|..+..+|.+.|++++|++.+++.++..... ........++..
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~ 122 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-GQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc-ccchhHHHHHHH
Confidence 44566667777777777666542 11111 2457777788888888888888888776521000 001112445566
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHHhhcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HHH
Q 048807 376 LIDGLCK-VGKQEEALGLIEQMRLRLQK-GCMP-NAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNV------VTL 446 (757)
Q Consensus 376 li~~~~~-~g~~~~A~~~~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~ 446 (757)
+...|.. .|++++|.+.+++....... +.++ ...++..++..+.+.|++++|++.|+++......... ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 6666644 58999999998876422111 1111 1345777888888888888888888887765322111 123
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 048807 447 NTLVDGMCRHGRINSAVEFFQEVTRKGLC-AN---AVTYTILITAFCN--VNNFQEAIKWFDDMSR 506 (757)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~~~~~~li~~~~~--~g~~~~A~~~~~~m~~ 506 (757)
...+..+...|+++.|...+++..+..+. ++ ......++.++-. .+.+++|+..|+++.+
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 34455566778888888888877665321 11 2233445555544 2346677776665443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=3e-06 Score=82.22 Aligned_cols=162 Identities=11% Similarity=-0.015 Sum_probs=73.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHH
Q 048807 556 SGFCKKKMLDKAYEVLQEMEDI----GMTP-NSVTYNTLISFLSKSGNFSAARRVLKKMVKE----GL-VPTVVTYGALI 625 (757)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~li 625 (757)
..|...|++++|.+.|.++.+. +-++ -..+|..+..+|.+.|++++|.+.+++..+. |- .....++..+.
T Consensus 45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 124 (290)
T d1qqea_ 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (290)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence 3455555555555555554432 1011 1134555555555555555555555554431 10 00122334444
Q ss_pred HHHHh-cCCHHHHHHHHHHhhhc---CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CH-HHHHH
Q 048807 626 HAFCV-NGHVDEAMKIFKELSSS---SNVSPN-TVIYNILIDSLCKNNQVELALSLMEEMKVKEVRP-----NT-NTYNA 694 (757)
Q Consensus 626 ~~~~~-~g~~~~A~~~~~~~~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~-~~~~~ 694 (757)
..|.. .|++++|+..+++..+. .+..+. ..++..++..|.+.|++++|++.|+++....... .. ..+..
T Consensus 125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (290)
T d1qqea_ 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (290)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHH
Confidence 44432 35666666665554321 111111 1235555666666666666666666655421110 00 12233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 048807 695 MFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 695 l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
.+.++...|+++.|.+.++++.+
T Consensus 205 ~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 205 KGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 33344555666666666666553
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=4.3e-07 Score=82.94 Aligned_cols=100 Identities=15% Similarity=-0.037 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTII 336 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 336 (757)
|+...+...++.|.+.|++++|+..|.++++.++. +...|+.+..+|.+.|++++|+..|++.++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 56666777889999999999999999999998765 89999999999999999999999999999864 33577899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 048807 337 NRLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~ 358 (757)
.+|.+.|++++|+..|+++++.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998864
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=3.8e-06 Score=68.56 Aligned_cols=88 Identities=18% Similarity=-0.002 Sum_probs=45.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHH
Q 048807 301 LNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGL 380 (757)
Q Consensus 301 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 380 (757)
...+.+.|++++|+..|.+.++.. +.+...|..+..+|.+.|++++|+..+.++++.+ +.+...|..+..++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~g~~~ 81 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------PDWGKGYSRKAAAL 81 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-------cchhhHHHHHHHHH
Confidence 344455555555555555555443 2334445555555555555555555555555543 34455555555555
Q ss_pred HHcCCHHHHHHHHHHH
Q 048807 381 CKVGKQEEALGLIEQM 396 (757)
Q Consensus 381 ~~~g~~~~A~~~~~~~ 396 (757)
...|++++|+..|++.
T Consensus 82 ~~~~~~~~A~~~~~~a 97 (117)
T d1elwa_ 82 EFLNRFEEAKRTYEEG 97 (117)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH
Confidence 5555555555555554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=6.5e-06 Score=71.52 Aligned_cols=89 Identities=10% Similarity=0.135 Sum_probs=43.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 048807 556 SGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVD 635 (757)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 635 (757)
..|.+.|++++|...|+++++.. +.+...|..+...|...|++++|...|+++++.. +-+...|..++.+|...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence 34445555555555555555443 3344445555555555555555555555554432 123344444555555555555
Q ss_pred HHHHHHHHhhh
Q 048807 636 EAMKIFKELSS 646 (757)
Q Consensus 636 ~A~~~~~~~~~ 646 (757)
+|...+++..+
T Consensus 96 eA~~~~~~a~~ 106 (159)
T d1a17a_ 96 AALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.24 E-value=6.5e-06 Score=74.72 Aligned_cols=93 Identities=12% Similarity=-0.008 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHH
Q 048807 332 FGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTY 411 (757)
Q Consensus 332 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 411 (757)
+...+..|.+.|++++|+..|+++++.+ |.+..+|+.+..+|.+.|++++|+..|++. ..-.+.+..+|
T Consensus 7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~a----l~l~p~~~~a~ 75 (201)
T d2c2la1 7 LKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRA----LELDGQSVKAH 75 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH----TTSCTTCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHH----HHhCCCcHHHH
Confidence 3334444444444444444444444432 333444444444444444444444444444 12122234444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 048807 412 NCLINGFCKSGNIEKGLELFHLMK 435 (757)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~ 435 (757)
..+..+|.+.|++++|+..|+++.
T Consensus 76 ~~lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 76 FFLGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444444444444444433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.22 E-value=3.7e-06 Score=67.95 Aligned_cols=91 Identities=8% Similarity=-0.013 Sum_probs=82.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcC
Q 048807 264 QLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLY 343 (757)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 343 (757)
.+...+.+.|++++|+..|+++++.++. +..+|..+..++.+.|++++|...|++.++.. +.+..+|..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence 4567788999999999999999998765 89999999999999999999999999999875 456888999999999999
Q ss_pred ChhHHHHHHHHHH
Q 048807 344 RADEALEVFEKMI 356 (757)
Q Consensus 344 ~~~~A~~~~~~~~ 356 (757)
+.++|++.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999864
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=4.1e-05 Score=67.01 Aligned_cols=124 Identities=9% Similarity=-0.043 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHH
Q 048807 184 RNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLT 263 (757)
Q Consensus 184 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 263 (757)
+...+..+.+.|++++|+..|.+.+...+.. +... ..... ....+ -..+|+
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~-~~~~--------------------~~~~~-~~~~~-------~~~~~~ 66 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYE-SSFS--------------------NEEAQ-KAQAL-------RLASHL 66 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-CCCC--------------------SHHHH-HHHHH-------HHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhc-cccc--------------------hHHHh-hhchh-------HHHHHH
Confidence 4556888899999999999999988753211 1100 01000 00111 123677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHH
Q 048807 264 QLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINR 338 (757)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 338 (757)
.+..+|.+.|++++|++.++.+++.+|. ++.+|..+..+|...|++++|...|++.++.+ |.|......+...
T Consensus 67 nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 67 NLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 7899999999999999999999998765 89999999999999999999999999999874 2244444333333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.14 E-value=8.2e-06 Score=65.84 Aligned_cols=91 Identities=14% Similarity=-0.008 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHH
Q 048807 333 GTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYN 412 (757)
Q Consensus 333 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 412 (757)
..+...+.+.|++++|+..|+++++.+ |.+..+|..+..++.+.|++++|+..|++.. ...+.+..+|.
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al----~~~p~~~~a~~ 88 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE-------PEREEAWRSLGLTQAENEKDGLAIIALNHAR----MLDPKDIAVHA 88 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc-------cccchhhhhhhhhhhhhhhHHHhhccccccc----ccccccccchH
Confidence 344555666677777777777766653 4456666666666767777777777666653 22344566666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 048807 413 CLINGFCKSGNIEKGLELFHLM 434 (757)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m 434 (757)
.+...|...|++++|++.+++.
T Consensus 89 ~la~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 89 ALAVSHTNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666666666666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=7.9e-06 Score=66.84 Aligned_cols=96 Identities=8% Similarity=-0.007 Sum_probs=80.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCCc-cchHHHHHHH
Q 048807 263 TQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREG---DFKRMNQLFTEMKENDIEPS-VVTFGTIINR 338 (757)
Q Consensus 263 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~ 338 (757)
..|++.+...+++++|++.|++.++.++. ++.++..+..++.+.+ ++++|+++|++++..+..|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 35778888999999999999999998765 8899999999998755 55679999999998753333 2467889999
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 048807 339 LCKLYRADEALEVFEKMIAGK 359 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~ 359 (757)
|.+.|++++|++.|+++++.+
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHhC
Confidence 999999999999999999854
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=2.9e-05 Score=67.99 Aligned_cols=118 Identities=13% Similarity=-0.007 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLE--------------AASCNALLNALGREGDFKRMNQLFTEMKENDIE 326 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 326 (757)
.+...++.|.+.|++++|+..|.++++..+... ..+|+.+..+|.+.|++++|+..++..++.+ |
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p 93 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 93 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-c
Confidence 445567889999999999999999886532211 2567788899999999999999999999975 4
Q ss_pred CccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCH
Q 048807 327 PSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQ 386 (757)
Q Consensus 327 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 386 (757)
.++.+|..+..+|...|++++|+..|+++++.+ |.|..+...+.....+.+..
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-------P~n~~~~~~l~~~~~~~~~~ 146 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-------PNNKAAKTQLAVCQQRIRRQ 146 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999865 44666666555554444333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=1e-05 Score=66.16 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=60.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 048807 623 ALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQ---VELALSLMEEMKVKEVRPN-TNTYNAMFKG 698 (757)
Q Consensus 623 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~ 698 (757)
.+++.+...+++++|.+.|++..+ .-+.+..++..++.++.+.++ +++|+.+|+++...+..|+ ..+|..++.+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 455566666677777777777666 123455566666666665443 3457777777665432222 1255666777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 048807 699 LRQKNMLDKAFKLMDRMIEHACHPDYI 725 (757)
Q Consensus 699 ~~~~g~~~~A~~~~~~~~~~g~~p~~~ 725 (757)
|.+.|++++|++.|+++++ +.|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCH
Confidence 7777777777777777776 356543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1.2e-06 Score=92.22 Aligned_cols=136 Identities=8% Similarity=-0.057 Sum_probs=70.9
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHH
Q 048807 271 RKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALE 350 (757)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 350 (757)
..+.++.|++.+....+..+ ++...+..+...+.+.|+.++|...+....... ...++..+...+...|++++|+.
T Consensus 98 a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~ 173 (497)
T d1ya0a1 98 ASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAES 173 (497)
T ss_dssp HHHHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHH
Confidence 34555666655555544432 256667777777777788877777776665432 12456667777777888888888
Q ss_pred HHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHc
Q 048807 351 VFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKS 421 (757)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (757)
.|.++++.. |.+..+|+.|...|...|+..+|...|.+. ..-.+|-..++..|...+.+.
T Consensus 174 ~y~~A~~l~-------P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ra----l~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 174 YYRHAAQLV-------PSNGQPYNQLAILASSKGDHLTTIFYYCRS----IAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHC-------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHH----HSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-------CCchHHHHHHHHHHHHcCCHHHHHHHHHHH----HhCCCCCHHHHHHHHHHHHHh
Confidence 888887764 555677888888888888888888888777 333456677777777666543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1.4e-06 Score=91.66 Aligned_cols=114 Identities=11% Similarity=-0.058 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 048807 407 NAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILIT 486 (757)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 486 (757)
+...+..+...+.+.|+.++|...+....+.. ...++..+...+...|++++|...|.++.+..+. +...|+.|..
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~ 194 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAI 194 (497)
T ss_dssp ------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHH
Confidence 33444445555555555555554444433321 1234444555555555555555555555554322 4445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 048807 487 AFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQ 525 (757)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 525 (757)
.|...|+..+|...|.+.+... +|-..++..|...+.+
T Consensus 195 ~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 195 LASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 5555555555555555555443 3444555555554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.00 E-value=0.002 Score=62.08 Aligned_cols=135 Identities=12% Similarity=0.115 Sum_probs=60.4
Q ss_pred ccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC
Q 048807 328 SVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPN 407 (757)
Q Consensus 328 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 407 (757)
|..-...++..|.+.|.++.|..+|..+. -|..++..|.+.++++.|.+.+.+. .+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------------d~~rl~~~~v~l~~~~~avd~~~k~---------~~ 68 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------------NFGRLASTLVHLGEYQAAVDGARKA---------NS 68 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------------CHHHHHHHHHTTTCHHHHHHHHHHH---------TC
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------------CHHHHHHHHHhhccHHHHHHHHHHc---------CC
Confidence 33334444555555666666666655431 1334445555566666665555544 14
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 048807 408 AVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGLCANAVTYTILITA 487 (757)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 487 (757)
..+|..+...+.+.....-| .+.......+......++..|...|.+++...+++..... -..+...++.++..
T Consensus 69 ~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~l 142 (336)
T d1b89a_ 69 TRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAIL 142 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHH
Confidence 44555555555555444332 1112222234444455566666666666666666655432 12355555666666
Q ss_pred HHhcC
Q 048807 488 FCNVN 492 (757)
Q Consensus 488 ~~~~g 492 (757)
|++.+
T Consensus 143 yak~~ 147 (336)
T d1b89a_ 143 YSKFK 147 (336)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 66543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=3.1e-05 Score=64.03 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCcc-------chHHH
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSV-------VTFGT 334 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ 334 (757)
+..+.+.|.+.|++++|++.|.++++.++. +..+|..+..+|.+.|++++|++.++++++.+ +.+. .+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 446788999999999999999999998765 89999999999999999999999999988743 1122 35666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 048807 335 IINRLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 335 li~~~~~~g~~~~A~~~~~~~~~~ 358 (757)
+...+...+++++|++.|++.+..
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Confidence 777788899999999999998764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=0.0035 Score=60.31 Aligned_cols=136 Identities=15% Similarity=0.036 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHH
Q 048807 257 PNAVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTII 336 (757)
Q Consensus 257 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 336 (757)
||..-...++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 4555555667777788888888888876542 5667777788888888877765432 456777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 048807 337 NRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLIN 416 (757)
Q Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (757)
..+.+.....-|.- .... ...+......++..|...|.+++...+++... .....+...++.++.
T Consensus 77 ~~l~~~~e~~la~i-----~~~~------~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~----~~~~~~~~~~~~L~~ 141 (336)
T d1b89a_ 77 FACVDGKEFRLAQM-----CGLH------IVVHADELEELINYYQDRGYFEELITMLEAAL----GLERAHMGMFTELAI 141 (336)
T ss_dssp HHHHHTTCHHHHHH-----TTTT------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT----TSTTCCHHHHHHHHH
T ss_pred HHHHhCcHHHHHHH-----HHHH------hhcCHHHHHHHHHHHHHcCChHHHHHHHHHHH----cCCccchHHHHHHHH
Confidence 77777665544311 1111 22344455677888888888888888888762 223556777788888
Q ss_pred HHHHcC
Q 048807 417 GFCKSG 422 (757)
Q Consensus 417 ~~~~~g 422 (757)
.|++.+
T Consensus 142 lyak~~ 147 (336)
T d1b89a_ 142 LYSKFK 147 (336)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 887754
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.97 E-value=0.00017 Score=62.79 Aligned_cols=142 Identities=10% Similarity=0.026 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHH
Q 048807 184 RNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLT 263 (757)
Q Consensus 184 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 263 (757)
+...+..+.+.|++.+|+..|++.+..-.. .+. ...... .....+ ...+|+
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~-~~~--------------------~~~~~~-~~~~~~-------~~~~~~ 68 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEM-EYG--------------------LSEKES-KASESF-------LLAAFL 68 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-CCS--------------------CCHHHH-HHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hhc--------------------cchhhh-hhcchh-------HHHHHH
Confidence 445678888999999999999887653111 000 000000 001111 133677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcC
Q 048807 264 QLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLY 343 (757)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 343 (757)
.+..+|.+.|++++|+..++.+++.++. +..+|..+..+|...|++++|...|.++++.+ |.+......+.....+.+
T Consensus 69 Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 69 NLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 7889999999999999999999998765 89999999999999999999999999999875 334555555444444443
Q ss_pred Chh-HHHHHHHHHH
Q 048807 344 RAD-EALEVFEKMI 356 (757)
Q Consensus 344 ~~~-~A~~~~~~~~ 356 (757)
... ...+++..|.
T Consensus 147 ~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 147 EHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 332 3344444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.93 E-value=8e-05 Score=63.72 Aligned_cols=110 Identities=14% Similarity=0.040 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC----C-----------HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 048807 261 WLTQLITRFCRKGKTDEAWDVLHVLMKFDAPL----E-----------AASCNALLNALGREGDFKRMNQLFTEMKENDI 325 (757)
Q Consensus 261 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 325 (757)
.+..-++.+.+.|++++|+..|.++++.-... + ..+|+.+..+|.+.|++++|++.+.+.++.+
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~- 97 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 97 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-
Confidence 44456678889999999999999988643211 1 2467788999999999999999999999875
Q ss_pred CCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHH
Q 048807 326 EPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLID 378 (757)
Q Consensus 326 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 378 (757)
+.+..+|..+..++...|++++|+..|++.++.+ |.|..+...+..
T Consensus 98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-------P~n~~~~~~l~~ 143 (153)
T d2fbna1 98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-------PNNLDIRNSYEL 143 (153)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHH
T ss_pred chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHH
Confidence 5578899999999999999999999999999864 445555554433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.90 E-value=0.00019 Score=61.24 Aligned_cols=122 Identities=10% Similarity=-0.045 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 048807 585 TYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSL 664 (757)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~ 664 (757)
.+..-+..+.+.|++++|+..|.++++.- +... .. .+.... ..... ....+|+.++.+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~-~~~~~~--~~~~~-----~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EW-DDQILL--DKKKN-----IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TC-CCHHHH--HHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hh-hhHHHH--Hhhhh-----HHHHHHhhHHHHH
Confidence 45556666777788888888777777531 1000 00 000000 00000 1134678899999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 048807 665 CKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEIL 730 (757)
Q Consensus 665 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l 730 (757)
.+.|++++|++.+++.++.. +.+..+|..++.++...|++++|+..|++.++. .|+. .+...+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l 141 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSY 141 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 99999999999999998853 447789999999999999999999999999974 6654 444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.84 E-value=7.4e-05 Score=65.26 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=89.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCC---------------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 048807 262 LTQLITRFCRKGKTDEAWDVLHVLMKFD---------------APLEAASCNALLNALGREGDFKRMNQLFTEMKENDIE 326 (757)
Q Consensus 262 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 326 (757)
+......+.+.|++++|++.|.++++.. -+.....|+.+..+|.+.|++++|+..+.++++.. +
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p 108 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 108 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-h
Confidence 3456777889999999999998876421 01234567888899999999999999999999875 4
Q ss_pred CccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcC
Q 048807 327 PSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVG 384 (757)
Q Consensus 327 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 384 (757)
.+..+|..+..++...|++++|++.|+++++.+ +.+..+...+..+..+..
T Consensus 109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-------p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-------PEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999865 456666666655554433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=0.0001 Score=60.73 Aligned_cols=102 Identities=14% Similarity=0.081 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHH
Q 048807 295 ASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFN 374 (757)
Q Consensus 295 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (757)
..+..+...|.+.|++++|++.|.+.++.+ +.+...+..+..+|.+.|++++|++.++++++.+.........-..+|.
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345678889999999999999999999986 4568889999999999999999999999998743100000000024667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 048807 375 TLIDGLCKVGKQEEALGLIEQMR 397 (757)
Q Consensus 375 ~li~~~~~~g~~~~A~~~~~~~~ 397 (757)
.+...+...+++++|++.|.+..
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 77788888888999999888764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.78 E-value=0.00018 Score=63.10 Aligned_cols=125 Identities=12% Similarity=-0.021 Sum_probs=88.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccCCCCCCcccHHHHHHHHHhhhhhccccChHHHHHHHHHHHhCCCCCCHHHHH
Q 048807 184 RNVLIDVLLRCDHDRDAFNVLDEMLDRESQFPVNELTGDIVFYALMRREHVKNSVTDEELVGLVSKFAEHGVFPNAVWLT 263 (757)
Q Consensus 184 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 263 (757)
....+......|++++|...|++.+... ++.... .+.. +.+ .......+-.. ....+.
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~----rG~~l~-----~~~~----~~w-~~~~r~~l~~~--------~~~a~~ 71 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREW----RGPVLD-----DLRD----FQF-VEPFATALVED--------KVLAHT 71 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC----CSSTTG-----GGTT----STT-HHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC----cccccc-----cCcc----hHH-HHHHHHHHHHH--------HHHHHH
Confidence 3445677788999999999999988742 222110 0000 000 00111111111 234677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCccch
Q 048807 264 QLITRFCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKE-----NDIEPSVVT 331 (757)
Q Consensus 264 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 331 (757)
.++..+.+.|++++|+..++++++.++. +...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+
T Consensus 72 ~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 72 AKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 8999999999999999999999998866 899999999999999999999999999854 588887654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.78 E-value=0.00041 Score=60.21 Aligned_cols=79 Identities=11% Similarity=0.018 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 048807 656 IYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDY-ISMEILTEWL 734 (757)
Q Consensus 656 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~ 734 (757)
+|+.+..+|.+.|++++|+..+++.+... +.+...|..++.++...|++++|++.|+++++ +.|+. .+...+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 56677888888899999999988888752 45677888888888889999999999998886 45544 4444444443
Q ss_pred Hhc
Q 048807 735 SEA 737 (757)
Q Consensus 735 ~~~ 737 (757)
...
T Consensus 143 ~~~ 145 (168)
T d1kt1a1 143 KKA 145 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.67 E-value=9.3e-05 Score=62.54 Aligned_cols=83 Identities=12% Similarity=0.014 Sum_probs=58.8
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHH
Q 048807 269 FCRKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEA 348 (757)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 348 (757)
|-+.+.+++|++.|+.+++.+|. ++.++..+..+|...+++..+.+- .+.+++|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~-------------------------~~~~~~A 60 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDA-------------------------KQMIQEA 60 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHH-------------------------HHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHH-------------------------HHHHHHH
Confidence 44566788888888888887755 777888887777766655544431 2345678
Q ss_pred HHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcC
Q 048807 349 LEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVG 384 (757)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 384 (757)
+..|+++++.+ |.+..+|..+..+|...|
T Consensus 61 i~~~~kAl~l~-------P~~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 61 ITKFEEALLID-------PKKDEAVWCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-------chhhHHHhhHHHHHHHcc
Confidence 88888888765 567778888888776654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.66 E-value=0.0002 Score=62.41 Aligned_cols=127 Identities=6% Similarity=-0.053 Sum_probs=75.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHH
Q 048807 298 NALLNALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLI 377 (757)
Q Consensus 298 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li 377 (757)
......+.+.|++++|++.|.++++.. ..........+. ... -+.+...|..+.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~-------~~~-------~~~~~~~~~nla 84 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADG-------AKL-------QPVALSCVLNIG 84 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHH-------GGG-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHH-------HHh-------ChhhHHHHHHHH
Confidence 345666788899999999998876420 000000111110 010 123455666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 048807 378 DGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCR 455 (757)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 455 (757)
.+|.+.|++++|+..+.++. .-.+.+..+|..+..+|...|++++|++.|++..+.... +......+..+..+
T Consensus 85 ~~~~~~~~~~~Ai~~~~~al----~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 85 ACKLKMSDWQGAVDSCLEAL----EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQK 157 (169)
T ss_dssp HHHHHTTCHHHHHHHHHHHH----TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHhhcccchhhhhhhhhh----hhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 77777777777777777763 334556777777777777777777777777777775322 44555555544433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.48 E-value=0.0015 Score=56.88 Aligned_cols=127 Identities=10% Similarity=0.066 Sum_probs=87.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHh
Q 048807 587 NTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCK 666 (757)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 666 (757)
..........|++++|.+.|.+.+..- +... +......+.+...-..+.. .....+..++..+.+
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~-----~~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVE-----DKVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 334456778899999999999988742 2111 0001111111111122222 123467889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 048807 667 NNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIE-----HACHPDYISMEI 729 (757)
Q Consensus 667 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~ 729 (757)
.|++++|+..+++++... +-+...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+-..
T Consensus 80 ~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred CCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 999999999999999852 44778899999999999999999999999843 599999865443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.44 E-value=0.00028 Score=59.43 Aligned_cols=87 Identities=10% Similarity=0.037 Sum_probs=60.7
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhhcCCCCCCH
Q 048807 339 LCKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVG----------KQEEALGLIEQMRLRLQKGCMPNA 408 (757)
Q Consensus 339 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~ 408 (757)
|-+.+.+++|+..|+++++.+ |.+..++..+..+|...+ .+++|+..|++.. +-.|.+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-------P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl----~l~P~~~ 75 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL----LIDPKKD 75 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH----HHCTTCH
T ss_pred HHHHccHHHHHHHHHHHHhhC-------CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH----Hhcchhh
Confidence 445677999999999999976 778888988888887543 4466777777763 2235567
Q ss_pred HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHh
Q 048807 409 VTYNCLINGFCKSGN-----------IEKGLELFHLMKQ 436 (757)
Q Consensus 409 ~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~ 436 (757)
.+|..+..+|...|+ +++|.+.|++..+
T Consensus 76 ~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 76 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 777777777766543 3555555555555
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.43 E-value=0.00011 Score=69.05 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=23.9
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 048807 271 RKGKTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQLFTEMKE 322 (757)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 322 (757)
+.|++++|+..+++.++..|. |...+..++..|+..|++++|.+.|+...+
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444444444444433 444444444444444444444444444444
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.31 E-value=0.00093 Score=56.98 Aligned_cols=93 Identities=19% Similarity=0.139 Sum_probs=73.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCC-C----------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CCCCc-
Q 048807 266 ITRFCRKGKTDEAWDVLHVLMKFDAP-L----------EAASCNALLNALGREGDFKRMNQLFTEMKEN-----DIEPS- 328 (757)
Q Consensus 266 i~~~~~~g~~~~A~~~~~~~~~~~~~-~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~- 328 (757)
+..+.+.|++++|++.|++.++..+. | ...+|+.+..+|.+.|++++|.+.+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 66777889999999999999874322 1 1468999999999999999999999998753 11111
Q ss_pred ----cchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 048807 329 ----VVTFGTIINRLCKLYRADEALEVFEKMIAG 358 (757)
Q Consensus 329 ----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 358 (757)
...+..+..+|...|++++|++.|++.++.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 224677889999999999999999998763
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.30 E-value=0.00016 Score=67.86 Aligned_cols=122 Identities=13% Similarity=-0.020 Sum_probs=70.6
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 048807 340 CKLYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGLCKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFC 419 (757)
Q Consensus 340 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (757)
.+.|++++|++.+++.++.. |.|...+..++..|+..|++++|.+.++..... .+.+...+..+...+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-------P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l----~P~~~~~~~~l~~ll~ 75 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-------PKDASLRSSFIELLCIDGDFERADEQLMQSIKL----FPEYLPGASQLRHLVK 75 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHH
Confidence 45688888888888888775 677788888888888888888888888877421 2334445554444443
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 048807 420 KSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRK 472 (757)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 472 (757)
..+..+++..-.......+-+++...+......+...|+.++|.+.+.++.+.
T Consensus 76 a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 76 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 33333322221111111111122233334445566667777777766666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.28 E-value=0.002 Score=54.85 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=59.8
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC--
Q 048807 626 HAFCVNGHVDEAMKIFKELSSSSNVSPN----------TVIYNILIDSLCKNNQVELALSLMEEMKVK-----EVRPN-- 688 (757)
Q Consensus 626 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-- 688 (757)
..+...|++++|+..|++..+...-.|+ ...|+.+..+|.+.|++++|...+++.+.. ...++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3344556666666666665542111111 346777888888888888888888777641 11222
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048807 689 ---TNTYNAMFKGLRQKNMLDKAFKLMDRMIE 717 (757)
Q Consensus 689 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 717 (757)
...+..++.+|...|++++|++.|+++++
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12466778889999999999999998875
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.0036 Score=47.73 Aligned_cols=76 Identities=13% Similarity=0.016 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-----C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCccchH
Q 048807 259 AVWLTQLITRFCRKGKTDEAWDVLHVLMKFDAP-----L-EAASCNALLNALGREGDFKRMNQLFTEMKENDIEPSVVTF 332 (757)
Q Consensus 259 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 332 (757)
...+-.+...+.+.|++++|+..|+++++..+. + ...+++.+..+|.+.|++++|+..++++++.. |-+..++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~ 83 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRAN 83 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHH
Confidence 445567888999999999999999988764211 1 25688899999999999999999999999874 3334455
Q ss_pred HHH
Q 048807 333 GTI 335 (757)
Q Consensus 333 ~~l 335 (757)
+.+
T Consensus 84 ~Nl 86 (95)
T d1tjca_ 84 GNL 86 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.0083 Score=45.62 Aligned_cols=78 Identities=13% Similarity=0.027 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-----CCCc-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc
Q 048807 293 EAASCNALLNALGREGDFKRMNQLFTEMKEND-----IEPS-VVTFGTIINRLCKLYRADEALEVFEKMIAGKETAEISV 366 (757)
Q Consensus 293 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 366 (757)
+...+-.+...+.+.|++++|...|++.++.. ..++ ..++..+..++.+.|++++|+..++++++.+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~------- 76 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD------- 76 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-------
Confidence 45566788999999999999999999987642 1111 3468889999999999999999999999965
Q ss_pred cCCHhHHHHHH
Q 048807 367 EPDVIIFNTLI 377 (757)
Q Consensus 367 ~~~~~~~~~li 377 (757)
|.+..+++.+.
T Consensus 77 P~~~~a~~Nl~ 87 (95)
T d1tjca_ 77 PEHQRANGNLK 87 (95)
T ss_dssp TTCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 44566666553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.31 E-value=0.049 Score=44.14 Aligned_cols=48 Identities=17% Similarity=0.026 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCC
Q 048807 563 MLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSK----SGNFSAARRVLKKMVKEG 613 (757)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 613 (757)
+.++|.++|++..+.| +......|...|.. ..+.++|.++|++..+.|
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 3445555555544443 23333334333333 234445555555444443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.21 E-value=0.18 Score=38.95 Aligned_cols=139 Identities=14% Similarity=0.059 Sum_probs=87.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 048807 560 KKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFSAARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMK 639 (757)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 639 (757)
-.|..++..++..+.... .+..-||.+|--....-+-+...+.++..-+. .| ...++++.....
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv~ 77 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVE 77 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHHH
Confidence 356666666666666553 24445555554444444444444444443321 11 123444544444
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 048807 640 IFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHA 719 (757)
Q Consensus 640 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 719 (757)
.+-.+- .+...+...++.+.++|+-++-.++++.+.+.+ +|++.....+..+|.+-|...++-+++.++.++|
T Consensus 78 C~~~~n------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 78 CGVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 443332 233456677788888999888888888877643 7888888889999999999999999999998887
Q ss_pred CC
Q 048807 720 CH 721 (757)
Q Consensus 720 ~~ 721 (757)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 64
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.20 E-value=0.067 Score=43.30 Aligned_cols=16 Identities=6% Similarity=0.235 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHhCC
Q 048807 423 NIEKGLELFHLMKQEG 438 (757)
Q Consensus 423 ~~~~A~~~~~~m~~~g 438 (757)
|+++|+++|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 3445555555554443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.92 E-value=1.5 Score=33.70 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 048807 413 CLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRINSAVEFFQEVTRKGL 474 (757)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 474 (757)
..++...++|+-++-.++++.+.+. -++++.....+..+|.+.|...++.+++.++.+.|.
T Consensus 91 lALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 91 KALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3344444555555555555554442 233444455555555555555555555555555443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.83 E-value=4.9 Score=39.46 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=18.2
Q ss_pred cCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048807 367 EPDVIIFNTLIDGLCKVGKQEEALGLIEQM 396 (757)
Q Consensus 367 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 396 (757)
+.+...-..+..+..+.|+.++|...+..+
T Consensus 99 p~~~~~~c~~~~A~~~~g~~~~a~~~~~~l 128 (450)
T d1qsaa1 99 PGTTEAQCNYYYAKWNTGQSEEAWQGAKEL 128 (450)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344554555666666677777776666555
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.31 E-value=5.7 Score=38.96 Aligned_cols=398 Identities=10% Similarity=0.035 Sum_probs=190.2
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCccchHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCcccccCCHhHHHHHHHHH
Q 048807 303 ALGREGDFKRMNQLFTEMKENDIEPSVVTFGTIINRLCK--LYRADEALEVFEKMIAGKETAEISVEPDVIIFNTLIDGL 380 (757)
Q Consensus 303 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 380 (757)
-..+.|+..++.++...+.. .| ...|...-..-.. ....++....+++-.. .+.....-...+..+
T Consensus 15 ~a~~~~~~~~~~~~~~~L~d---yp-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~--------~P~~~~lr~~~l~~L 82 (450)
T d1qsaa1 15 QAWDNRQMDVVEQMMPGLKD---YP-LYPYLEYRQITDDLMNQPAVTVTNFVRANPT--------LPPARTLQSRFVNEL 82 (450)
T ss_dssp HHHHTTCHHHHHHHSGGGTT---ST-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTT--------CHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhhhcC---CC-CHHHHHHHHHHhccccCCHHHHHHHHHHCCC--------ChhHHHHHHHHHHHH
Confidence 34566777777777766632 12 2223222211112 2234444333332110 111122233446677
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 048807 381 CKVGKQEEALGLIEQMRLRLQKGCMPNAVTYNCLINGFCKSGNIEKGLELFHLMKQEGVTPNVVTLNTLVDGMCRHGRIN 460 (757)
Q Consensus 381 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 460 (757)
.+.+++++....+ ...+.+...-...+.+..+.|+.++|.+.+..+-..|.. ....+..+...+.+.|.+.
T Consensus 83 ~~~~~w~~~~~~~--------~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~~~lt 153 (450)
T d1qsaa1 83 ARREDWRGLLAFS--------PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQD 153 (450)
T ss_dssp HHTTCHHHHHHHC--------CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSC
T ss_pred HhccCHHHHHHhc--------cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCCCC
Confidence 7888887644433 223556666677888888999999999888887766532 3334455555554444432
Q ss_pred HH--HHHHHHHHHCCC-----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-
Q 048807 461 SA--VEFFQEVTRKGL-----------CA-NAVTYTILITAFCNVNNFQEAIKWFDDMSRAGCSADSVVYFTLISGLCQ- 525 (757)
Q Consensus 461 ~A--~~~~~~~~~~~~-----------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~- 525 (757)
.. .+-+..+...|- ++ ........+........... . .... ..+......+..++.+
T Consensus 154 ~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~---~---~~~~--~~~~~~~~~~~~~l~rl 225 (450)
T d1qsaa1 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLT---F---ARTT--GATDFTRQMAAVAFASV 225 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHH---H---HHHS--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHH---H---HhcC--CCChhhhHHHHHHHHHH
Confidence 21 122222222210 00 11111222222111111111 0 0011 1222222222233222
Q ss_pred -cCChhHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 048807 526 -AGRMNDASLVVSKLKEAGFRPDIVCYNHLI----SGFCKKKMLDKAYEVLQEMEDIGMTPNSVTYNTLISFLSKSGNFS 600 (757)
Q Consensus 526 -~g~~~~A~~~~~~~~~~g~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 600 (757)
..+.+.|..++......... +...+...- ......+..+.+...+......+ .+.......+......+++.
T Consensus 226 a~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~ 302 (450)
T d1qsaa1 226 ARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRR 302 (450)
T ss_dssp HHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHH
T ss_pred hccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChH
Confidence 24566666666665543222 222222222 22223455566666666655543 34443344444455567777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048807 601 AARRVLKKMVKEGLVPTVVTYGALIHAFCVNGHVDEAMKIFKELSSSSNVSPNTVIYNILIDSLCKNNQVELALSLMEEM 680 (757)
Q Consensus 601 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 680 (757)
.+...+..|.... .....-.--+..++...|+.++|...|..+.. .++ .|.-|... +.|..- . +
T Consensus 303 ~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~Lg~~~---~----~ 366 (450)
T d1qsaa1 303 GLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--RIGEEY---E----L 366 (450)
T ss_dssp HHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--HTTCCC---C----C
T ss_pred HHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--HcCCCC---C----C
Confidence 7777776664321 11222333445666777777777777776654 133 23222211 111100 0 0
Q ss_pred HhCCCC--CC-HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHhhch
Q 048807 681 KVKEVR--PN-TNT---YNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILTEWLSEAGQTEKLKKFVQGYA 751 (757)
Q Consensus 681 ~~~g~~--p~-~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 751 (757)
.....+ +. ... -..-+..+...|+..+|...+..+.+. . +......+.....+.|..+.|.....+..
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~-~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 367 KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC-C--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 000000 00 000 112355677889999999999888753 2 45556677788888999999988776643
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.30 E-value=0.85 Score=35.39 Aligned_cols=71 Identities=10% Similarity=0.066 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 048807 652 PNTVIYNILIDSLCKNN---QVELALSLMEEMKVKEVRPNT-NTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYI 725 (757)
Q Consensus 652 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 725 (757)
+...+--....++.+.. +.++|+.++++....+ +.+. ..+..|.-+|.+.|++++|.++++++++ +.|+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence 44555555666666554 4567788887777532 2232 4556677778888888888888888876 466653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.55 E-value=1.8 Score=33.47 Aligned_cols=83 Identities=10% Similarity=0.021 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 048807 241 EELVGLVSKFAEHG-VFPNAVWLTQLITRFCRKG---KTDEAWDVLHVLMKFDAPLEAASCNALLNALGREGDFKRMNQL 316 (757)
Q Consensus 241 ~~~~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 316 (757)
++...+-.+..+.+ -.+.+.+--...-++.+.. +.++|+.+|+.+.+.++......+-.|.-+|.+.|++++|.+.
T Consensus 16 ~el~~~~~q~~~e~~~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~ 95 (124)
T d2pqrb1 16 QQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY 95 (124)
T ss_dssp HHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33333444444442 2344555555666666554 4567888888888755332235667777788888888888888
Q ss_pred HHHHHHC
Q 048807 317 FTEMKEN 323 (757)
Q Consensus 317 ~~~m~~~ 323 (757)
++.+++.
T Consensus 96 ~~~~L~i 102 (124)
T d2pqrb1 96 VDTLFEH 102 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 8888876
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.73 E-value=1.5 Score=31.93 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 048807 669 QVELALSLMEEMKVKEVRPNTNTYNAMFKGLRQKNMLDKAFKLMDRMIEHACHPDYISMEILT 731 (757)
Q Consensus 669 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 731 (757)
+.=++.+-++.+....+.|++....+.+.+|.+-+++.-|.++++....+ ..++..+|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 34456666666667777888888888888888888888888888877664 344455666665
|