Citrus Sinensis ID: 048809

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------88
Protein Sequence
MGGCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCLLLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQWDDEKRWAWKDDLNTTIQYLYQQQ
Secondary Structure (PSIPRED)
ccccEEEEEEcccccccccccccccEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHHccccccccccccHHHHHHcccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccEEEEccHHHHHHHHHHccccEEEEEEcccccccccccccccccEEEEEcccccccccccccccccccEEEEccccccccccHHHcccccccEEEccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccEEccccccccccccccccccccccEEccccccccccHHcccccccccccEEEEcccccccccccccccccEEEEEEccccccccccccHHHHHHHHHccccccccccccccccccccEEEEccccccEEEEEcccccccccccEEEEEEcccccccccccccccccccccccccEEEEcccccccccccccccccccccccEEEEEEccccccccccccccccccccEEEEEccccccHHHccccccccccccccccccccccEEEEcccccccEEcccccccccccccEEEEEcccccccccccccccccccccccEEEEccccccccHHHHHHcccccHHHccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEEccccccccccccccccccccEEEEEEcccccEEEccccccccccccccccccccccEEEccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEEcccccccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccHEEEcHccccccccccccHHHHEEEccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHHHccccEEEEEEccccccccccccccccEEEEEEccccccccccccccccccEEEEEcccccccccHHHHccccccEEEEEcccccccccccccccccccEEEccccccccccccccccccEEEEEcccccccccccccccccccEEEcccccccccccccccccHHHHHHHHccccccccHHHHcccccccEEEEEccccccccccHHHHHHHHHEEEcccccccccccccccHHHHHHHHHcccccccccccccccccccEcEcccccccHHccccccccccccccEEEEccccccEEcccccccccccccccccccEEEEcccHcHHHccccccccccccccEEEEEccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccEEEEcccccHccccccccccccccccEEEEccccccccccccccccccEEEEEccccccccccccccccHHHHHccccccccccccccccccccccccccccccEEEEccccccccccccccccccccEEEEccccccccccccccccccHcccEEEEcccHHHHHHHHHccccccccccccccccccccEEEEcccccHcccccccccccccccccEEEEcccccccccccccccccccEEEEEEEcccccccccHccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGGCKVLLTArshdvlsskmdcqKNIFVDVLNAKEAWSLFEKMtgdciengelkSVATEIVKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLELsyyhlededlggeELRKTFLLIGYSYIRNVKDLLYHGmglglfqnintvDEARDRAHTLVDKLKNsclllggwrsewfSMHDVVRDVAISIASRDQHVFAVenevvpltswpdkdvlkdctaislnnsninelpqgfecpqlkyfrihndhslkipdnfftgmteLRVLDFTRMHLLALPSslgllqnlqtlsldycelgdmaiIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEelyigespiewgkvegvdgerrnaslhelnnlskltSLEILIQdektlprdLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANiclngghimqlkgikdlclggsldmksvlygsdgegfpqlkrlevvknsnllcVVDTVDRATALTTAFPVLESLLLRHLSNLEkicrgplaaesfckvKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAergdessnsntQVIELTQlttlelcslpqltsfctgdlhfefpsleklkilecpqvkfkstiHESTKKRFHTIKVLCIegydydgeELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEiygcdnlinlvpsstsfqnltTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITeivvdddeegdnyAANYEIVFSELKELRLSSLESLTsfcsvnncafkfpslerlvvedcpnmsifsggelstpnlrKVQLKQWDDEKRWAWKDDLNTTIQYLYQQQ
Flexible Loop (DISEMBL)
mggckvlltarshdvlsskmdcQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCLLLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEvvpltswpdkdVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLhelnnlskltslEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAergdessnsNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVKFkstihestkkrfhtiKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSifsggelstpnlRKVQLKQWDDEKRWAWKDDLNTTIQYLYQQQ
Low Complexity Region (SEG)
MGGCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHlededlggeelRKTFLLIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCLLLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHllalpsslgllqnlqtlslDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVleslllrhlsnleKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFselkelrlsslesltsFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQWDDEKRWAWKDDLNTTIQYLYQQQ
Disordered region (IsUnstruct)
****KVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCLLLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAE**********QVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQWDDEKRWAWKDDLNTTIQYLY***
Disordered Region (DISOPRED)
MGGCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALKNKSSLYVWKDALR*LK*******AY*SLELSYYHLEDEDLGGEELRKTFLLIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCLLLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAA*************IELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVD************EIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQWDDEKRWAWKDDLNTTIQYLYQ**
Disordered Region (DISEMBL)
MGGCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCLLLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQWDDEKRWAWKDDLNTTIQYLYQQQ
Disordered Region (DISPRO)
*GGCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCLLLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQWDDEKRWAWKDDLNTTIQYLYQQQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCLLLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQWDDEKRWAWKDDLNTTIQYLYQQQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	878	2.2.26 [Sep-21-2011]
O81825	919	Probable disease resistan	yes	no	0.691	0.660	0.282	3e-37
Q9T048	985	Disease resistance protei	no	no	0.692	0.617	0.266	9e-37
Q42484	909	Disease resistance protei	no	no	0.643	0.621	0.252	2e-29
Q9LVT4	843	Probable disease resistan	no	no	0.376	0.392	0.296	7e-26
O64973	889	Disease resistance protei	no	no	0.386	0.381	0.270	2e-20
Q8RXS5	888	Probable disease resistan	no	no	0.382	0.378	0.274	9e-20
Q9FLB4	874	Putative disease resistan	no	no	0.571	0.574	0.251	1e-18
Q9C8T9	898	Putative disease resistan	no	no	0.376	0.368	0.267	1e-18
P60838	894	Probable disease resistan	no	no	0.359	0.353	0.277	7e-18
Q9SI85	893	Probable disease resistan	no	no	0.592	0.582	0.246	1e-17

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score =  157 bits (398), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 192/680 (28%), Positives = 301/680 (44%), Gaps = 73/680 (10%)

Query: 5   KVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKEC 64
           KV+LT+R  +V   +M   +NI V  L  KEAW LF    G+   +  +K +A ++  EC
Sbjct: 247 KVVLTSRRLEV-CQQMMTNENIKVACLQEKEAWELFCHNVGEVANSDNVKPIAKDVSHEC 305

Query: 65  AGLPIAILPVAKALKNKSSLYVWKDALRQLKNKS----LLGAAYSSLELSYYHLEDEDLG 120
            GLP+AI+ + + L+ K  + VWK  L  LK  +         + +L+LSY  L+D    
Sbjct: 306 CGLPLAIITIGRTLRGKPQVEVWKHTLNLLKRSAPSIDTEEKIFGTLKLSYDFLQD---- 361

Query: 121 GEELRKTFL---LIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCL 177
              ++  FL   L    Y   V +L+ + +  GL    +  ++  +   TLV++LK+SCL
Sbjct: 362 --NMKSCFLFCALFPEDYSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCL 419

Query: 178 LLGGWRSEWFSMHDVVRDVAI-SIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISLNN 236
           L  G   +   MHDVVRD AI  ++S+ +   ++      L  +P    +     +SL  
Sbjct: 420 LEDGDSCDTVKMHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMA 479

Query: 237 SNINELP----QGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSL 292
           + +  LP    +G E   L      N H  ++P+ F      LR+LD + + +  LP S 
Sbjct: 480 NKLERLPNNVIEGVET--LVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSF 537

Query: 293 GLLQNLQTLSLDYC-ELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIA--- 348
             L +L++L L  C +L ++  +  L KL  L L  S ++EL   +  L+ LR +     
Sbjct: 538 SNLHSLRSLVLRNCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNT 597

Query: 349 ------PI-----LSRLEELYIGESPIEWGKVEGVDGERR--NASLHELNNLSKLTSLEI 395
                 P      LS LE L +  S   W    G+ GE R   A+L E+  L  L  L I
Sbjct: 598 YQLQSIPAGTILQLSSLEVLDMAGSAYSW----GIKGEEREGQATLDEVTCLPHLQFLAI 653

Query: 396 LIQDEKTLPRDL-SFFKMLQRYRILIGSQWTWDYISS-----EISEIFRLMVASGANICL 449
            + D  +   +  S  K L +++ L     +     +      IS++      S A+I  
Sbjct: 654 KLLDVLSFSYEFDSLTKRLTKFQFLFSPIRSVSPPGTGEGCLAISDVN----VSNASI-- 707

Query: 450 NGGHIMQLKGIKDLCLGGSLD-MKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRAT 508
             G ++Q     DL     L+ M   L       F  +K L +    +    +       
Sbjct: 708 --GWLLQHVTSLDLNYCEGLNGMFENLVTKSKSSFVAMKALSI----HYFPSLSLASGCE 761

Query: 509 ALTTAFPVLESLLLRHLSNLEKICR-GPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRG- 566
           +    FP LE L L ++ NLE I            K+K ++V  C +LK +F   I  G 
Sbjct: 762 SQLDLFPNLEELSLDNV-NLESIGELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQILAGT 820

Query: 567 LQQLQSIEVTGCQNLEVI--FAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGD 624
           L  LQ I+V  C  LE +  F++   D  + S      L +LT ++L  LPQL S C   
Sbjct: 821 LPNLQEIKVVSCLRLEELFNFSSVPVDFCAES-----LLPKLTVIKLKYLPQLRSLCNDR 875

Query: 625 LHFEFPSLEKLKILECPQVK 644
           +  E  SLE L++  C  +K
Sbjct: 876 VVLE--SLEHLEVESCESLK 893

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score =  156 bits (394), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 183/686 (26%), Positives = 320/686 (46%), Gaps = 78/686 (11%)

Query: 3   GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVK 62
           G KV+LT+R  +V  S M    ++ VD L  ++AW LF K  GD + +  ++ +A  + +
Sbjct: 275 GSKVILTSRFLEVCRS-MKTDLDVRVDCLLEEDAWELFCKNAGDVVRSDHVRKIAKAVSQ 333

Query: 63  ECAGLPIAILPVAKALKNKSSLYVWKDALRQLKN-----KSLLGAAYSSLELSYYHLEDE 117
           EC GLP+AI+ V  A++ K ++ +W   L +L       KS+    +  L+LSY  LED+
Sbjct: 334 ECGGLPLAIITVGTAMRGKKNVKLWNHVLSKLSKSVPWIKSIEEKIFQPLKLSYDFLEDK 393

Query: 118 DLGGEELRKTFLLIGY---SYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKN 174
                  +  FLL       Y   V +++ + M  G  + + + +++ +   T V+ LK+
Sbjct: 394 A------KFCFLLCALFPEDYSIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKD 447

Query: 175 SCLLLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTA--- 231
            CLL  G R +   MHDVVRD AI I S  Q     ++  + ++    +D+ +D  A   
Sbjct: 448 YCLLEDGDRRDTVKMHDVVRDFAIWIMSSSQD----DSHSLVMSGTGLQDIRQDKLAPSL 503

Query: 232 --ISLNNSNINELPQGFE--CPQLKYFRIHNDHSLK-IPDNFFTGMTELRVLDFTRMHLL 286
             +SL N+ +  LP   E  C +     +  +  LK +P  F      LR+L+ +   + 
Sbjct: 504 RRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNFLLKEVPIGFLQAFPTLRILNLSGTRIK 563

Query: 287 ALPS-SLGLLQNLQTLSLDYC-ELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLR 344
           + PS SL  L +L +L L  C +L  +  +  L KL +L L G+ + E    + +L + R
Sbjct: 564 SFPSCSLLRLFSLHSLFLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFR 623

Query: 345 LL--------------IAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKL 390
            L              +   LS LE L +  S   W  V+G + ++  A++ E+  L +L
Sbjct: 624 HLDLSRTLHLESIPARVVSRLSSLETLDMTSSHYRWS-VQG-ETQKGQATVEEIGCLQRL 681

Query: 391 TSLEILIQDEK-TLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICL 449
             L I +      L +  ++ K L+++++++GS+    YI     +  RL ++      +
Sbjct: 682 QVLSIRLHSSPFLLNKRNTWIKRLKKFQLVVGSR----YILRTRHDKRRLTISHLNVSQV 737

Query: 450 NGGHIMQLKGIKDL--CLGGSLDMKSVLYGSDGEGFPQLKRL---EVVKNSNL---LCVV 501
           + G ++       L  C G    MK ++  SD +GF  LK L    V+ N+N    +   
Sbjct: 738 SIGWLLAYTTSLALNHCQGIEAMMKKLV--SDNKGFKNLKSLTIENVIINTNSWVEMVST 795

Query: 502 DTVDRATALTTAFPVLESLLLRHLSNLEKICRGP----LAAESFCKVKDIRVEWCDKLKN 557
           +T  +++ +    P LE L LR + +LE          L  E+   +K I +  C KL+ 
Sbjct: 796 NTSKQSSDILDLLPNLEELHLRRV-DLETFSELQTHLGLKLET---LKIIEITMCRKLRT 851

Query: 558 VFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQL 617
           +        +  L+ IE++ C +L+ +  A    +    N +V        L+L +LP L
Sbjct: 852 LLDKRNFLTIPNLEEIEISYCDSLQNLHEALLYHQPFVPNLRV--------LKLRNLPNL 903

Query: 618 TSFCTGDLHFEFPSLEKLKILECPQV 643
            S C     +E   LE+++++ C Q+
Sbjct: 904 VSICNWGEVWE--CLEQVEVIHCNQL 927

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score =  131 bits (330), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 166/658 (25%), Positives = 276/658 (41%), Gaps = 93/658 (14%)

Query: 4   CKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLF--EKMTGDCIENGELKSVATEIV 61
           CKV+ T RS   L + M  +  + V+ L  K AW LF  +    D +E+  ++ +A  IV
Sbjct: 284 CKVMFTTRS-IALCNNMGAEYKLRVEFLEKKHAWELFCSKVWRKDLLESSSIRRLAEIIV 342

Query: 62  KECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSL----LGAAYSSLELSYYHLEDE 117
            +C GLP+A++ +  A+ ++ +   W  A   L         +   ++ L+ SY +LE  
Sbjct: 343 SKCGGLPLALITLGGAMAHRETEEEWIHASEVLTRFPAEMKGMNYVFALLKFSYDNLES- 401

Query: 118 DLGGEELRKTFL---LIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKN 174
           DL    LR  FL   L    +   ++ L+ + +G G   + + V+    + + L+  LK 
Sbjct: 402 DL----LRSCFLYCALFPEEHSIEIEQLVEYWVGEGFLTSSHGVNTIY-KGYFLIGDLKA 456

Query: 175 SCLLLGGWRSEWFSMHDVVRDVAISIASRD---QHVFAVENEVVPLTSWPDKDVLKDCTA 231
           +CLL  G       MH+VVR  A+ +AS     + +  VE   +  T  P  +  +    
Sbjct: 457 ACLLETGDEKTQVKMHNVVRSFALWMASEQGTYKELILVEPS-MGHTEAPKAENWRQALV 515

Query: 232 ISLNNSNINELPQGFECPQLKYFRIHNDHSL-KIPDNFFTGMTELRVLDFTRMHLLALPS 290
           ISL ++ I  LP+   CP+L    +  + SL KIP  FF  M  LRVLD +   +  +P 
Sbjct: 516 ISLLDNRIQTLPEKLICPKLTTLMLQQNSSLKKIPTGFFMHMPVLRVLDLSFTSITEIPL 575

Query: 291 SLGLLQNLQTLSLDYCELGDMAI-IGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAP 349
           S+  L  L  LS+   ++  +   +G+L+KL  L L+ +   + +         R  I  
Sbjct: 576 SIKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIP--------RDAIC- 626

Query: 350 ILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSF 409
            LS+LE L +  S   W      + E       +L  L  LT+L I +   +TL     F
Sbjct: 627 WLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLETLKTLFEF 686

Query: 410 ---FKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLG 466
               K +Q   +             E +E+    + S  N           + ++ L + 
Sbjct: 687 GALHKHIQHLHV------------EECNELLYFNLPSLTN---------HGRNLRRLSIK 725

Query: 467 GSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLS 526
              D++ ++  +D E                                 P LE L L  L 
Sbjct: 726 SCHDLEYLVTPADFEN-----------------------------DWLPSLEVLTLHSLH 756

Query: 527 NLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFA 586
           NL ++    ++ +    ++ I +  C+KLKNV  +   + L +L+ IE+  C+ +E + +
Sbjct: 757 NLTRVWGNSVSQDCLRNIRCINISHCNKLKNVSWV---QKLPKLEVIELFDCREIEELIS 813

Query: 587 AERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK 644
               +  S S         L TL    LP+L S       F F  +E L I  CP+VK
Sbjct: 814 ----EHESPSVEDPTLFPSLKTLRTRDLPELNSILPS--RFSFQKVETLVITNCPRVK 865

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT4|DRL37_ARATH Probable disease resistance protein At5g47250 OS=Arabidopsis thaliana GN=At5g47250 PE=2 SV=1

 Score =  119 bits (299), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 176/357 (49%), Gaps = 26/357 (7%)

Query: 5   KVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKEC 64
           KV+ T RS DV S  M   ++I V  L+  +AW LF+ M   C    E+  +A +IV +C
Sbjct: 288 KVVFTTRSKDVCSV-MRANEDIEVQCLSENDAWDLFD-MKVHCDGLNEISDIAKKIVAKC 345

Query: 65  AGLPIAILPVAKALKNKSSLYVWKDALRQLKN-----KSLLGAAYSSLELSYYHLEDEDL 119
            GLP+A+  + K + +KS++  W+ AL  L++     K      +  L+LSY +L+ ++ 
Sbjct: 346 CGLPLALEVIRKTMASKSTVIQWRRALDTLESYRSEMKGTEKGIFQVLKLSYDYLKTKN- 404

Query: 120 GGEELRKTFL---LIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSC 176
                 K FL   L   +Y     +L+ + +G G     +  + A+DR + ++D L  + 
Sbjct: 405 -----AKCFLYCALFPKAYYIKQDELVEYWIGEGFIDEKDGRERAKDRGYEIIDNLVGAG 459

Query: 177 LLLGGWRSEWFSMHDVVRDVAISIAS--RDQHVFAVENEVVPLTSWPDKDVLKDCTAISL 234
           LLL   +  +  MHD++RD+A+ I S  RD   + V+ +   L+  PD       T +SL
Sbjct: 460 LLLESNKKVY--MHDMIRDMALWIVSEFRDGERYVVKTD-AGLSQLPDVTDWTTVTKMSL 516

Query: 235 NNSNINELPQGFECP---QLKYFRIHNDHSLKIPDNFFTGMTELRVLDFT-RMHLLALPS 290
            N+ I  +P   E P    L    + N+  + I   FF  M+ L VLD +    +  LP 
Sbjct: 517 FNNEIKNIPDDPEFPDQTNLVTLFLQNNRLVDIVGKFFLVMSTLVVLDLSWNFQITELPK 576

Query: 291 SLGLLQNLQTLSLDYCELGDMAI-IGDLKKLVILALRGSDMKELVGEIGQLTQLRLL 346
            +  L +L+ L+L    +  +   +G L KL+ L L  +     VG I +L +L++L
Sbjct: 577 GISALVSLRLLNLSGTSIKHLPEGLGVLSKLIHLNLESTSNLRSVGLISELQKLQVL 633

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 167/358 (46%), Gaps = 19/358 (5%)

Query: 3   GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCI--ENGELKSVATEI 60
           GCKV  T RS DV   +M     + V  L  +E+W LF+   G      + ++  +A ++
Sbjct: 286 GCKVAFTTRSRDV-CGRMGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKV 344

Query: 61  VKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHL---EDE 117
            ++C GLP+A+  + +A+  K +++ W  A+  L + ++    +S +E    H+     +
Sbjct: 345 ARKCRGLPLALNVIGEAMACKRTVHEWCHAIDVLTSSAI---DFSGMEDEILHVLKYSYD 401

Query: 118 DLGGEELRKTFL---LIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKN 174
           +L GE ++  FL   L    Y+ + + L+ + +  G        +   ++ + ++  L  
Sbjct: 402 NLNGELMKSCFLYCSLFPEDYLIDKEGLVDYWISEGFINEKEGRERNINQGYEIIGTLVR 461

Query: 175 SCLLLGGWRSEW-FSMHDVVRDVAISIASR--DQHVFAVENEVVPLTSWPDKDVLKDCTA 231
           +CLLL   R++    MHDVVR++A+ I+S    Q    +    V L   P          
Sbjct: 462 ACLLLEEERNKSNVKMHDVVREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRK 521

Query: 232 ISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLL-ALPS 290
           ISL N+ I E+    EC  L    +  +  +KI   FF  M  L VLD +    L  LP 
Sbjct: 522 ISLMNNEIEEIFDSHECAALTTLFLQKNDVVKISAEFFRCMPHLVVLDLSENQSLNELPE 581

Query: 291 SLGLLQNLQTLSLDYCELGDMAI-IGDLKKLVILALRG-SDMKELVGEIGQLTQLRLL 346
            +  L +L+  +L Y  +  + + +  LKKL+ L L   S +  ++G I  L  LR L
Sbjct: 582 EISELASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILG-ISNLWNLRTL 638

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score = 99.8 bits (247), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 171/357 (47%), Gaps = 21/357 (5%)

Query: 3   GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCI--ENGELKSVATEI 60
           GCK++ T R  ++   +M    ++ V  L   +AW LF K  G+     + E+ +VA  +
Sbjct: 284 GCKIVFTTRLKEI-CGRMGVDSDMEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTV 342

Query: 61  VKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLE---LSYYHLEDE 117
            K+C GLP+A+  + + +  K ++  W+ A+  L + +   A +S +E   L       +
Sbjct: 343 AKKCRGLPLALNVIGETMAYKRTVQEWRSAIDVLTSSA---AEFSGMEDEILPILKYSYD 399

Query: 118 DLGGEELRKTFLLIG-YSYIRNVK--DLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKN 174
           +L  E+L+  F     +    N++  DL+ + +G G         +A ++ + ++  L  
Sbjct: 400 NLKSEQLKLCFQYCALFPEDHNIEKNDLVDYWIGEGFID--RNKGKAENQGYEIIGILVR 457

Query: 175 SCLLLGGWRSEWFSMHDVVRDVAISIAS---RDQHVFAVENEVVPLTSWPDKDVLKDCTA 231
           SCLL+     E   MHDVVR++A+ IAS   + +  F V+  +    + P+ +  K    
Sbjct: 458 SCLLMEE-NQETVKMHDVVREMALWIASDFGKQKENFIVQAGLQS-RNIPEIEKWKVARR 515

Query: 232 ISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFT-RMHLLALPS 290
           +SL  +NI  +    E PQL    +  +    I  +FF  M  L VLD +    L  LP+
Sbjct: 516 VSLMFNNIESIRDAPESPQLITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPN 575

Query: 291 SLGLLQNLQTLSLDYCELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL 346
            +    +LQ LSL    +    A + +L+KL+ L L  + M E +  I  LT L++L
Sbjct: 576 EISECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTRMVESICGISGLTSLKVL 632

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 151/601 (25%), Positives = 253/601 (42%), Gaps = 99/601 (16%)

Query: 3   GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIE-NGELKSVATEIV 61
           G K+  T+RS++V   KM   K I V  L   +AW LF +   + +E + ++  VA  I 
Sbjct: 284 GSKIAFTSRSNEV-CGKMGVDKEIEVTCLMWDDAWDLFTRNMKETLESHPKIPEVAKSIA 342

Query: 62  KECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLE---LSYYHLEDED 118
           ++C GLP+A+  + + +  K S+  W DA+            +S +E   LS      +D
Sbjct: 343 RKCNGLPLALNVIGETMARKKSIEEWHDAV----------GVFSGIEADILSILKFSYDD 392

Query: 119 LGGEELRKTFL---LIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNS 175
           L  E+ +  FL   L    Y     DL+ + +G G+      ++    + +T++  L  +
Sbjct: 393 LKCEKTKSCFLFSALFPEDYEIGKDDLIEYWVGQGIILGSKGINY---KGYTIIGTLTRA 449

Query: 176 CLLLGGWRSEWFSMHDVVRDVAISIAS-----RDQHVFAVENEVVPLTSWPDKDVLKDCT 230
            LL      E   MHDVVR++A+ I+S     + ++V  VE     L   P  +  K   
Sbjct: 450 YLLKESETKEKVKMHDVVREMALWISSGCGDQKQKNVLVVEAN-AQLRDIPKIEDQKAVR 508

Query: 231 AISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNF---------------------- 268
            +SL  + I E  +   CP+L+   + ++   KI   F                      
Sbjct: 509 RMSLIYNQIEEACESLHCPKLETLLLRDNRLRKISREFLSHVPILMVLDLSLNPNLIELP 568

Query: 269 -FTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCE-LGDMAIIGDLKKLVILALR 326
            F+ +  LR L+ +   + +LP  L  L+NL  L+L++   L  +  I DL  L +L L 
Sbjct: 569 SFSPLYSLRFLNLSCTGITSLPDGLYALRNLLYLNLEHTYMLKRIYEIHDLPNLEVLKLY 628

Query: 327 GSDM---KELVGEIGQLTQLRLLIAPIL-SRLEELYIGESPIEWGKVEGVDGERRNASLH 382
            S +    +LV +I  +  L LL   +  S   E+++G++       EG+  + ++    
Sbjct: 629 ASGIDITDKLVRQIQAMKHLYLLTITLRNSSGLEIFLGDTRFS-SYTEGLTLDEQSYYQS 687

Query: 383 ELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI-GSQWTWDYISSEISEIFRLMV 441
               L+ ++S   L   +  +P            +I I GS       SS  SEI     
Sbjct: 688 LKVPLATISSSRFLEIQDSHIP------------KIEIEGS-------SSNESEIV---- 724

Query: 442 ASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVV 501
             G  +  +   I   K   D C G   D+  +++       P L  L VV   ++  ++
Sbjct: 725 --GPRVRRDISFINLRKVRLDNCTGLK-DLTWLVFA------PHLATLYVVCLPDIEHII 775

Query: 502 -----DTVDRATALTTAFPV--LESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDK 554
                  + +   L    P   LE L LR+L  L+ I R PL    F K+K+I ++ C K
Sbjct: 776 SRSEESRLQKTCELAGVIPFRELEFLTLRNLGQLKSIYRDPLL---FGKLKEINIKSCPK 832

Query: 555 L 555
           L
Sbjct: 833 L 833

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 181/366 (49%), Gaps = 35/366 (9%)

Query: 4   CKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCI--ENGELKSVATEIV 61
           CKV+ T RS DV +S M  +K + V  L   +A+ LF+K  G      + E++ ++  + 
Sbjct: 283 CKVVFTTRSLDVCTS-MGVEKPMEVQCLADNDAYDLFQKKVGQITLGSDPEIRELSRVVA 341

Query: 62  KECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLE---LSYYHLEDED 118
           K+C GLP+A+  V++ +  K ++  W+ A+  L +     A +S ++   L       + 
Sbjct: 342 KKCCGLPLALNVVSETMSCKRTVQEWRHAIYVLNS---YAAKFSGMDDKILPLLKYSYDS 398

Query: 119 LGGEELRKTFLLIGY----SYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKN 174
           L GE+++   L        + IR  ++L+ + +   +      +D+A ++ + ++  L  
Sbjct: 399 LKGEDVKMCLLYCALFPEDAKIRK-ENLIEYWICEEIIDGSEGIDKAENQGYEIIGSLVR 457

Query: 175 SCLLLGGWR---SEWFSMHDVVRDVAISIAS---RDQHVFAVE-----NEVVPLTSWPDK 223
           + LL+       +    +HDVVR++A+ IAS   +    F V       E++ + +W   
Sbjct: 458 ASLLMEEVELDGANIVCLHDVVREMALWIASDLGKQNEAFIVRASVGLREILKVENW--- 514

Query: 224 DVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRM 283
           +V++    +SL  +NI  L    +C +L    + + H  KI   FF  M +L VLD +  
Sbjct: 515 NVVR---RMSLMKNNIAHLDGRLDCMELTTLLLQSTHLEKISSEFFNSMPKLAVLDLSGN 571

Query: 284 HLLA-LPSSLGLLQNLQTLSLDYCELGDMAI-IGDLKKLVILAL-RGSDMKELVGEIGQL 340
           + L+ LP+ +  L +LQ L+L    +  +   + +LKKL+ L L R S +  +VG I  L
Sbjct: 572 YYLSELPNGISELVSLQYLNLSSTGIRHLPKGLQELKKLIHLYLERTSQLGSMVG-ISCL 630

Query: 341 TQLRLL 346
             L++L
Sbjct: 631 HNLKVL 636

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 154/339 (45%), Gaps = 23/339 (6%)

Query: 3   GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENG--ELKSVATEI 60
           GCKV+ T RS DV   +M     + V  L   EAW LF+   G+    G  ++  +A ++
Sbjct: 286 GCKVVFTTRSRDV-CGRMRVDDPMEVSCLEPNEAWELFQMKVGENTLKGHPDIPELARKV 344

Query: 61  VKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLE--LSYYHLEDED 118
             +C GLP+A+  + + +  K  +  W++A+  L   S   A +  +E  L       ++
Sbjct: 345 AGKCCGLPLALNVIGETMACKRMVQEWRNAIDVL---SSYAAEFPGMEQILPILKYSYDN 401

Query: 119 LGGEELRKTFL---LIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNS 175
           L  E+++  FL   L    Y    + L+ + +  G      + + A  + + ++  L  +
Sbjct: 402 LNKEQVKPCFLYCSLFPEDYRMEKERLIDYWICEGFIDENESRERALSQGYEIIGILVRA 461

Query: 176 CLLL-GGWRSEWFSMHDVVRDVAISIAS-----RDQHVFAVENEVVPLTSWPDKDVLKDC 229
           CLLL      E   MHDVVR++A+ IAS     +++ +  V    V L   P        
Sbjct: 462 CLLLEEAINKEQVKMHDVVREMALWIASDLGEHKERCIVQVG---VGLREVPKVKNWSSV 518

Query: 230 TAISLNNSNINELPQGFECPQL-KYFRIHNDHSLKIPDNFFTGMTELRVLDFT-RMHLLA 287
             +SL  + I  L    EC +L   F   ND  L I D FF  +  L VLD +    L  
Sbjct: 519 RRMSLMENEIEILSGSPECLELTTLFLQKNDSLLHISDEFFRCIPMLVVLDLSGNSSLRK 578

Query: 288 LPSSLGLLQNLQTLSLDYCELGDMAI-IGDLKKLVILAL 325
           LP+ +  L +L+ L L +  +  + + + +LKKL  L L
Sbjct: 579 LPNQISKLVSLRYLDLSWTYIKRLPVGLQELKKLRYLRL 617

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score = 92.4 bits (228), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 151/612 (24%), Positives = 267/612 (43%), Gaps = 92/612 (15%)

Query: 3   GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGE--LKSVATEI 60
           GCK+  T+RS +V +S  D ++ + V  L    A+ LF+K  G      +  +  +A  +
Sbjct: 282 GCKLAFTSRSLNVCTSMGD-EEPMEVQCLEENVAFDLFQKKVGQKTLGSDPGIPQLARIV 340

Query: 61  VKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKS--LLGAAYSSLELSYYHLEDED 118
            K+C GLP+A+  + + +  K ++  W++A+  L + +   +G     L L  Y    ++
Sbjct: 341 AKKCCGLPLALNVIGETMSCKRTIQEWRNAIHVLNSYAAEFIGMEDKILPLLKYSY--DN 398

Query: 119 LGGEELRKTFLLIGYSYIRNVK----DLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKN 174
           L GE ++ + L     Y  + K    DL+ H +   +      +++A D+ + ++  L  
Sbjct: 399 LKGEHVKSSLLYCAL-YPEDAKIRKEDLIEHWICEEIIDGSEGIEKAEDKGYDIIGSLVR 457

Query: 175 SCLL-----LGGWRSEWFSMHDVVRDVAISIASR---DQHVFAVE-----NEVVPLTSWP 221
           + LL     L G  S    MHDVVR++A+ IAS     +  F V       E+  + +W 
Sbjct: 458 ASLLMECVDLKGKSS--VIMHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKVKNW- 514

Query: 222 DKDVLKDCTAISLNNSNINELPQGFECPQL--------KYFRIHNDHSLK-IPDNFFTGM 272
             +V++    +SL  + I+ L   +EC +L        +Y  I     +K I   FF  M
Sbjct: 515 --NVVR---RMSLMGNKIHHLVGSYECMELTTLLLGEGEYGSIWRWSEIKTISSEFFNCM 569

Query: 273 TELRVLDFTR-MHLLALPSSLGLLQNLQTLSLDYCELGDMAI-IGDLKKLVILALRGSDM 330
            +L VLD +    L  LP  +  L +L+ L+L +  +  ++  I +LKK++ L L  +  
Sbjct: 570 PKLAVLDLSHNQSLFELPEEISNLVSLKYLNLSHTGIRHLSKGIQELKKIIHLNLEHTSK 629

Query: 331 KELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKL 390
            E +  I  L  L++L         +LY               G R    L+ +  L  L
Sbjct: 630 LESIDGISSLHNLKVL---------KLY---------------GSRLPWDLNTVKELETL 665

Query: 391 TSLEILIQD-EKTLPRDLSFFKMLQRYRIL--IGS-------QWTWDYISSEISEIFRLM 440
             LEIL    +    + LS  +++ R R+L   GS       Q     +S++    F +M
Sbjct: 666 EHLEILTTTIDPRAKQFLSSHRLMSRSRLLQIFGSNIFSPDRQLESLSVSTDKLREFEIM 725

Query: 441 VASGANICLNG-GHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLC 499
             S + I + G  + + L  +      G  ++  +++       P+L+ L VV   +L  
Sbjct: 726 CCSISEIKMGGICNFLSLVDVTIYNCEGLRELTFLIFA------PKLRSLSVVDAKDLED 779

Query: 500 VVD---TVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLK 556
           +++     +   +    FP L+ L L  L  L+ I R PL    F  ++ I +  C  L+
Sbjct: 780 IINEEKACEGEDSGIVPFPELKYLNLDDLPKLKNIYRRPLP---FLCLEKITIGECPNLR 836

Query: 557 NVFPLVIGRGLQ 568
            + PL    G Q
Sbjct: 837 KL-PLDSRSGKQ 847

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	878
255563252	1603	Disease resistance protein RPS5, putativ	0.899	0.492	0.403	1e-141
255574526	1232	Disease resistance protein RFL1, putativ	0.966	0.689	0.381	1e-140
296087872	1152	unnamed protein product [Vitis vinifera]	0.904	0.689	0.373	1e-130
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.911	0.608	0.375	1e-130
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.872	0.311	0.380	1e-126
224111284	1340	cc-nbs-lrr resistance protein [Populus t	0.892	0.585	0.373	1e-125
224083434	1144	cc-nbs-lrr resistance protein [Populus t	0.879	0.674	0.387	1e-125
359488027	1520	PREDICTED: disease resistance protein At	0.912	0.526	0.359	1e-123
224143316	1337	cc-nbs-lrr resistance protein [Populus t	0.902	0.592	0.373	1e-121
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.849	0.440	0.367	1e-120

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 356/882 (40%), Positives = 505/882 (57%), Gaps = 92/882 (10%)

Query: 3    GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVK 62
            GCK+LLT+RS D+LS  M  QK   ++VL  +EA SLFE M GD ++ GE +S A+E+ K
Sbjct: 282  GCKILLTSRSRDLLSCDMGVQKVFRLEVLQEEEALSLFEMMVGD-VKGGEFQSAASEVTK 340

Query: 63   ECAGLPIAILPVAKALKNKSSLYVWKDALRQLK---NKSLLGAAYSSLELSYYHLEDEDL 119
            +CAGLP+ I+ +A+ALKNK  LYVWKDA++QL    N+ +    YS+LELSY HL     
Sbjct: 341  KCAGLPVLIVTIARALKNKD-LYVWKDAVKQLSRCDNEEIQEKVYSALELSYNHL----- 394

Query: 120  GGEELRKTFLLIGYSYIRNVK--DLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCL 177
             G E++  FLL G     ++   DLL +  GLGLF+ I+T+ +AR+R H L+  LK +CL
Sbjct: 395  IGAEVKSLFLLCGLLGKSDIAILDLLMYSTGLGLFKGIDTLGDARNRVHKLISDLKAACL 454

Query: 178  LLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISLNNS 237
            LL         +HDVVRDVAISIASR QH+F V N  + L  WP+KDV K CT ISL  +
Sbjct: 455  LLDSDIKGRVKIHDVVRDVAISIASRMQHLFTVRNGAL-LKEWPNKDVCKSCTRISLPYN 513

Query: 238  NINELPQGFECPQLKYFRIHN-DHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQ 296
            +I+ LP+  ECP+L+ F +   D SLK+PD  F     LRVL+FT MH  +LP SLG L+
Sbjct: 514  DIHGLPEVLECPELELFLLFTQDISLKVPDLCFELTKNLRVLNFTGMHFSSLPPSLGFLK 573

Query: 297  NLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL---------- 346
            NL TL LD+C L D+AIIG+L  L IL+ + SD+ EL  EI QLT+L+ L          
Sbjct: 574  NLFTLCLDWCALRDVAIIGELTGLTILSFKHSDIVELPREIRQLTKLKFLDLSHCLKLKV 633

Query: 347  ----IAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKT 402
                I   L++LEELY+  S   W  V+G++ + RNASL EL  L  LT+LEI + D K 
Sbjct: 634  IPAKIISELTQLEELYMNNSFDLW-DVQGINNQ-RNASLAELECLPYLTTLEICVLDAKI 691

Query: 403  LPRDLSFFKMLQRYRILIGSQW--TWDYISSEISEIFRLMVASGANICLNGGHIMQLKGI 460
            LP+DL FF+ L+R+RI IG  W  T DY +S   ++ +L  +S   I L  G  + L+  
Sbjct: 692  LPKDL-FFRKLERFRIFIGDVWSGTGDYGTSRTLKL-KLNTSS---IHLEHGLSILLEVT 746

Query: 461  KDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESL 520
            +DL L     +KSVLY  D +GF QLK L+V  +  +  ++D   R+     AFP+LESL
Sbjct: 747  EDLYLAEVKGIKSVLYDLDSQGFTQLKHLDVQNDPEIQYIIDPNRRSPC--NAFPILESL 804

Query: 521  LLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQN 580
             L +L +LEKIC G L   SF K++ + V  CD+LKN+F   + R L QLQ ++V  C N
Sbjct: 805  YLDNLMSLEKICCGKLTTGSFSKLRSLTVVKCDRLKNLFSFSMMRCLLQLQQMKVVDCAN 864

Query: 581  LEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILEC 640
            LE I A   G E ++++ + ++LTQL +L L  LP   SFC+           K K+   
Sbjct: 865  LEEIVAC--GSEDTDNDYEAVKLTQLCSLTLKRLPMFKSFCS-----------KKKV--- 908

Query: 641  PQVKFKSTIHESTKKRFHT---IKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLK 697
                  S I    +K+  T   +K +  +G   D   LF       N M       P+L+
Sbjct: 909  ------SPISLRVQKQLTTDTGLKEIAPKGELGDPLPLF-------NEMF----CFPNLE 951

Query: 698  QILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSL 757
                       NLE+  I  C+ + +   S+ S  NL ++ V+ C+ +  + TSS  K+L
Sbjct: 952  -----------NLELSSI-ACEKICDDQLSAIS-SNLMSLIVERCWNLKYLFTSSLVKNL 998

Query: 758  VRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCA 817
            + LK++++F C  +  I+V   EE      N + +F EL  L+L +L  +T FC  +   
Sbjct: 999  LLLKRLEVFDCMSVEGIIV--AEELVEEERNRKKLFPELDFLKLKNLPHITRFC--DGYP 1054

Query: 818  FKFPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQWDDEK 859
             +F SL +L++E+CP +++F     S   +   + K  + EK
Sbjct: 1055 VEFSSLRKLLIENCPALNMFVSKSPSADMIESREAKGMNSEK 1096

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574526|ref|XP_002528174.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532386|gb|EEF34181.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 373/978 (38%), Positives = 534/978 (54%), Gaps = 129/978 (13%)

Query: 3    GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVK 62
            GCK+LL +RS DVLS +M  ++N  ++VL   E+WSLFEK  G  + N E    A EIV+
Sbjct: 271  GCKILLASRSLDVLSHQMGAERNFRLEVLTLDESWSLFEKTIGG-LGNPEFVYAAREIVQ 329

Query: 63   ECAGLPIAILPVAKALKNKSSLYVWKDALRQLK--NKSLLGAAYSSLELSYYHLEDEDLG 120
              AGLP+ I   AKALK K+ L VWK+A +++   +  + G  +S+LELSY HL+D    
Sbjct: 330  HLAGLPLMITATAKALKGKN-LSVWKNASKEISKVDDGVQGKLFSALELSYNHLDDN--- 385

Query: 121  GEELRKTFLL---IGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCL 177
              E+R  FLL   +G S IR ++DLL + +GLGL  +  TVD AR R H ++ +LK+SCL
Sbjct: 386  --EVRSLFLLCGLLGKSDIR-IQDLLKYSIGLGLLYDTRTVDYARRRVHAMISELKSSCL 442

Query: 178  LLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISLNNS 237
            LL G  + +  +HD+++D A+SIA R+Q VF + N  + L  WPD+D LK CT ISL   
Sbjct: 443  LLDGEMNGFVKIHDLIQDFAVSIAYREQQVFTINN-YIRLEVWPDEDALKSCTRISLPCL 501

Query: 238  NINELPQGFECPQLKYFRIHNDH-SLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQ 296
            N+ +LP+  E P L++  +  +  SL+IP +FF G+  L+VLDF  M   +LP SLG L+
Sbjct: 502  NVVKLPEVLESPNLEFLLLSTEEPSLRIPGSFFQGIPILKVLDFCGMSFSSLPPSLGCLE 561

Query: 297  NLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL---------- 346
            +L+TL LD+C L D+AIIG+LKKL IL    SD+ EL  EIG+L++L+LL          
Sbjct: 562  HLRTLCLDHCLLHDIAIIGELKKLEILTFAHSDIVELPREIGELSRLKLLDLSHCSKLNV 621

Query: 347  -IAPILSR---LEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKT 402
              A +LSR   LEELY+  S + W K+EG+  +  NASL EL  LS LTSLEI I D + 
Sbjct: 622  FPANVLSRLCLLEELYMANSFVRW-KIEGLMNQ-SNASLDELVLLSHLTSLEIQILDARI 679

Query: 403  LPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKD 462
            LPRDL F K LQRY+ILIG +W W+    E S + +L + +  +          L+G  D
Sbjct: 680  LPRDL-FTKKLQRYKILIGDEWDWNG-HDETSRVLKLKLNTSIHSEYEVNQF--LEGTDD 735

Query: 463  LCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLL 522
            L L  +  + S+LY  + EGFPQLKRL V     + C+V+  +  +  T AFP+L+SLLL
Sbjct: 736  LSLADARGVNSILYNLNSEGFPQLKRLIVQNCPEIHCLVNASE--SVPTVAFPLLKSLLL 793

Query: 523  RHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLE 582
             +L NLEK C G L   SF +++ I+V  C++LKN+    + R L QLQ +EV  C+N+ 
Sbjct: 794  ENLMNLEKFCHGELVGGSFSELRSIKVRSCNELKNLLSFSMVRFLMQLQEMEVIDCRNVM 853

Query: 583  VIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCT-----------------GDL 625
             IF  E  D  S+   +   LT+L +L L  LP+L SFC+                  D 
Sbjct: 854  EIFKYEGAD--SDIEDKAAALTRLRSLTLERLPKLNSFCSIKEPLTIDPGLEEIVSESDY 911

Query: 626  H-----FEFPSLEKLKI--LECPQV----------KFKSTIHESTK-----------KRF 657
                  F+ P+LE L +  + C  +            KS I E+ +           + F
Sbjct: 912  GPSVPLFQVPTLEDLILSSIPCETIWHGELSTACSHLKSLIVENCRDWKYLFTLSMIRSF 971

Query: 658  HTIKVLCIEGYDY-DG---EELFETVENGVNAMIKGINF--HPDLKQILKQESSHA---- 707
              ++ L I   ++ +G    E F   E  +  M   +NF    +L  +      H     
Sbjct: 972  IRLEKLEICNCEFMEGIIRTEEFSEEEGMIKLMFPRLNFLKLKNLSDVSSLRIGHGLIEC 1031

Query: 708  NNLEVLEIYGCDNLINLVPSSTSF----QNLTTVAVDFCYGM------------------ 745
             +L  LE+   ++L N+   +  F    QN+  + V FC  +                  
Sbjct: 1032 PSLRHLELNRLNDLKNIWSRNIHFDPFLQNVEILKVQFCENLTNLAMPSASFQNLTCLEV 1091

Query: 746  ------INILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKEL 799
                  IN++TSS A S+V+L  M I  C M+T IV D+ +E        EI+F++LK L
Sbjct: 1092 LHCSKVINLVTSSVATSMVQLVTMHIEDCDMLTGIVADEKDETAG-----EIIFTKLKTL 1146

Query: 800  RLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQWDDEK 859
             L  L++LTSFC   N  F FPSLE + V  CP + +FS G      L +V L ++  E 
Sbjct: 1147 ALVRLQNLTSFCLRGN-TFNFPSLEEVTVAKCPKLRVFSPGITIASKLERV-LIEFPSED 1204

Query: 860  RWAWKDDLNTTIQYLYQQ 877
            +W W+ +LN TI+ +Y +
Sbjct: 1205 KWRWEGNLNATIEQMYSE 1222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera]

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 337/903 (37%), Positives = 493/903 (54%), Gaps = 109/903 (12%)

Query: 3   GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVK 62
           GCK++LT+R+  +LS++M  QK+  V+ L  +EA  LF+KM GD IE  +L+S+A ++ K
Sbjct: 100 GCKMVLTSRNKHILSNEMGTQKDFPVEHLQEEEALILFKKMAGDSIEEPDLQSIAIDVAK 159

Query: 63  ECAGLPIAILPVAKALKNKSSLYVWKDALRQLKN------KSLLGAAYSSLELSYYHLED 116
           ECAGLPIAI+ VAKALKNK  L +W+DALRQLK       K +    YS+LELSY HLE 
Sbjct: 160 ECAGLPIAIVTVAKALKNKG-LSIWEDALRQLKRSIPTNIKGMDAMVYSTLELSYKHLE- 217

Query: 117 EDLGGEELRKTFLLIG-YSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNS 175
               G+E++  FLL G  S    + DLL +GMGL LFQ  NT++EA++R  TLVD LK S
Sbjct: 218 ----GDEVKSLFLLCGLMSNKIYIDDLLKYGMGLRLFQGTNTLEEAKNRIDTLVDSLKAS 273

Query: 176 CLLLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISLN 235
            LLL    + +  MHDVVRDVAI+I S+   VF++  +   L  WP  D L+ CT +SL 
Sbjct: 274 KLLLDTGHNSFVRMHDVVRDVAIAIVSKVHRVFSLRED--ELVEWPKMDELQTCTKMSLA 331

Query: 236 NSNINELPQGFECPQLKYFRIHN--DHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLG 293
            ++I ELP    CP+L+ F  ++  D+ LKIP+ FF  M +L+VLD + MH  +LPSSL 
Sbjct: 332 YNDICELPIELVCPELELFLFYHTIDYHLKIPETFFEEMKKLKVLDLSNMHFTSLPSSLR 391

Query: 294 LLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL------- 346
            L NL+TLSL++C+LGD++II +LKKL   +  GS++++L  EI QLT LRL        
Sbjct: 392 CLTNLRTLSLNWCKLGDISIIVELKKLEFFSFMGSNIEKLPREIAQLTHLRLFDLRDCSK 451

Query: 347 ---IAP----ILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQD 399
              I P     LS+LE L +  S   W +VEG    + NAS+ E   L  LT+L+I I D
Sbjct: 452 LREIPPNVISSLSKLENLCMENSFTLW-EVEG----KSNASIAEFKYLPYLTTLDIQIPD 506

Query: 400 EKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKG 459
            + L  D+ F K++ RYRI IG  W+WD  +   ++  +L      ++ L  G  + LKG
Sbjct: 507 AELLLTDVLFEKLI-RYRIFIGDVWSWDK-NCPTTKTLKLN-KLDTSLRLADGISLLLKG 563

Query: 460 IKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLES 519
            KDL L       +V    D EGF QLK L V ++  +  +++++D   +   AFPVLES
Sbjct: 564 AKDLHLRELSGAANVFPKLDREGFLQLKCLHVERSPEMQHIMNSMDPILS-PCAFPVLES 622

Query: 520 LLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQ 579
           L L  L NL+++C G L   SF  ++ ++VE+CD LK +F + + RGL +L+ IE+T C+
Sbjct: 623 LFLNQLINLQEVCHGQLLVGSFSYLRIVKVEYCDGLKFLFSMSMARGLSRLEKIEITRCK 682

Query: 580 NLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILE 639
           N+  + A  +G E  +     I   +L  L L  LP+L +FC        PS  K     
Sbjct: 683 NMYKMVA--QGKEDGDDAVDAILFAELRYLTLQHLPKLRNFCLEGK--TMPSTTKRS--P 736

Query: 640 CPQVKFKSTIHES-----------------------TKKRFHTIKVLCI-------EGYD 669
              V+F     E                          KR  +++ L         E +D
Sbjct: 737 TTNVRFNGICSEGELDNQTSVFNQLVCHSSIILSNYMLKRLQSLQFLKAVDCSSLEEVFD 796

Query: 670 YDGEELFETVENGVNAMIKGI-NFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSS 728
            +G  + E V   V  + K I  F P +KQI  +E                         
Sbjct: 797 MEGINVKEAV--AVTQLSKLILQFLPKVKQIWNKEPR---------------------GI 833

Query: 729 TSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAAN 788
            +FQNL +V +D C  + N+  +S  + LV+L++++++ C +  E++V  D  G   AA 
Sbjct: 834 LTFQNLKSVMIDQCQSLKNLFPASLVRDLVQLQELQVWSCGI--EVIVAKD-NGVKTAAK 890

Query: 789 YEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPNLR 848
           +  VF ++  LRLS L  L SF    + + ++P L+ L V +CP + +F+     TP  +
Sbjct: 891 F--VFPKVTSLRLSHLHQLRSFYPGAHTS-QWPLLKELKVHECPEVDLFA---FETPTFQ 944

Query: 849 KVQ 851
           ++ 
Sbjct: 945 QIH 947

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 333/887 (37%), Positives = 490/887 (55%), Gaps = 87/887 (9%)

Query: 3    GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVK 62
            GCK+L+++R+  VLS +M   +N  + VL A EAW+LFEKM G  ++   ++ VA E+ +
Sbjct: 275  GCKILMSSRNEYVLSREMGSNRNFPIQVLPASEAWNLFEKMVGVAVKKHSVRLVAAEVAR 334

Query: 63   ECAGLPIAILPVAKALKNKSSLYVWKDALRQLK---NKSLLGAAYSSLELSYYHLEDEDL 119
             CAGLPI +  VA+ALKNK  LY WK AL+QL       +    Y  LELSY     + L
Sbjct: 335  RCAGLPILLATVARALKNKD-LYAWKKALKQLTRFDKDDIDDQVYLGLELSY-----KSL 388

Query: 120  GGEELRKTFLLIGYSYIRNV--KDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCL 177
             G+E++  FLL G     N+   DLL +G+GL LF+  +T++E R+   TLVD+LK SCL
Sbjct: 389  RGDEIKSLFLLCGQLRSNNILISDLLRYGIGLDLFKGCSTLEETRNSLLTLVDELKASCL 448

Query: 178  LLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISLNNS 237
            LL G +     MHDVV   AIS+A RD HV  V +E      WP  DVL+  TAISL   
Sbjct: 449  LLEGDKDGSVKMHDVVHSFAISVALRDHHVLTVADE---FKEWPANDVLQQYTAISLPFR 505

Query: 238  NINELPQGFECPQLKYFRIHN-DHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQ 296
             I +LP   ECP L  F + N D SL+IPD+FF  M EL++LD T ++L  LPSSL  L+
Sbjct: 506  KIPDLPAILECPNLNSFLLLNKDPSLQIPDSFFREMKELKILDLTEVNLSPLPSSLQFLE 565

Query: 297  NLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL---------- 346
            NLQTL LD+C L D++IIG+L KL +L+L  S++  L  EIG++T+L+LL          
Sbjct: 566  NLQTLCLDHCVLEDISIIGELNKLKVLSLMSSNIVRLPREIGKVTRLQLLDLSNCERLEV 625

Query: 347  IAP----ILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKT 402
            I+P     L+RLE+LY+G S ++W + EG   +R NA L EL +LS L++L + I D   
Sbjct: 626  ISPNALSSLTRLEDLYMGNSFVKW-ETEGSSSQRNNACLSELKHLSNLSTLHMQITDADN 684

Query: 403  LPRDL-SFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIK 461
            +P+DL S F+ L+R+RI IG  W W  +    S   +L + +   I L  G    LK  +
Sbjct: 685  MPKDLFSSFQNLERFRIFIGDGWDWS-VKDATSRTLKLKLNTV--IQLEEGVNTLLKITE 741

Query: 462  DLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLL 521
            +L L     +KS+L   DGEGFPQL+ L V     +  +++++       TAF  L+SL 
Sbjct: 742  ELHLQELNGVKSILNDLDGEGFPQLRHLHVQNCPGVQYIINSIRMGP--RTAFLNLDSLF 799

Query: 522  LRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNL 581
            L +L NLEKIC G L AES   ++ ++VE C +LKN+F + + R L +L+ I +  C+ +
Sbjct: 800  LENLDNLEKICHGQLMAESLGNLRILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIM 859

Query: 582  EVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECP 641
            E + A E  +++++    +IE TQL  L L  LPQ TS                      
Sbjct: 860  EEVVAEESENDAADGEP-IIEFTQLRRLTLQCLPQFTS---------------------- 896

Query: 642  QVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVN-AMIKGINFHPDLKQIL 700
               F S + ES+  +    K+L  E      +E+    E G + ++       P+L+ + 
Sbjct: 897  ---FHSNVEESSDSQRRQ-KLLASEAR---SKEIVAGNELGTSMSLFNTKILFPNLEDL- 948

Query: 701  KQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRL 760
                   ++++V +I+     +     S   +NL ++AV+ C  +  +LTSS  +SL +L
Sbjct: 949  -----KLSSIKVEKIWHDQPSVQ----SPCVKNLASIAVENCRNLNYLLTSSMVESLAQL 999

Query: 761  KQMKIFHCKMITEIVVDDD-EEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFK 819
            K+++I +CK + EIVV +D  EG   +   +++F +L  L L  L  LT FC+ N    +
Sbjct: 1000 KKLEICNCKSMEEIVVPEDIGEGKMMS---KMLFPKLLILSLIRLPKLTRFCTSN--LLE 1054

Query: 820  FPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQWDDEKRWAWKDD 866
              SL+ L V +CP +  F    +S P+   V      D  + A  DD
Sbjct: 1055 CHSLKVLTVGNCPELKEF----ISIPSSADVPAMSKPDNTKSALFDD 1097

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 328/863 (38%), Positives = 485/863 (56%), Gaps = 97/863 (11%)

Query: 3    GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVK 62
            GCK+L+T+R+ +VL + MD Q++  + VL  +EAW LFEK  G+ +++  L  +AT+I +
Sbjct: 234  GCKILMTSRNLNVLLA-MDVQRHFLLRVLQDEEAWQLFEKKAGE-VKDPTLHPIATQIAR 291

Query: 63   ECAGLPIAILPVAKALKNKSSLYVWKDALRQLK--NKSLLGAAYSSLELSYYHLEDEDLG 120
            +CAGLP+ I+ VA ALKNK  L  W+DAL  L   +K    A+Y++L+LSY  L      
Sbjct: 292  KCAGLPVLIVAVATALKNKE-LCEWRDALEDLNKFDKEGYEASYTALKLSYNFL------ 344

Query: 121  GEELRKTFLLIGY--SYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCLL 178
            G E +  F+L G   ++   V DLL + +GLGLF    TV  AR+R   +V+ LK SCLL
Sbjct: 345  GAEEKSLFVLCGQLKAHYIVVSDLLKYSLGLGLFNQRTTVKAARNRLLKVVNDLKRSCLL 404

Query: 179  LGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISLNNSN 238
            L G   +   MHDVV + A  +ASRD HVFAV  +   L  WP+KD+L+  TAISL +  
Sbjct: 405  LEGDDDDEVRMHDVVHNFATLVASRDHHVFAVACDS-GLEEWPEKDILEQFTAISLPDCK 463

Query: 239  INELPQGFECPQLKYFRIHN-DHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQN 297
            I +LP+ FECP L+ F ++N D SLKIPDNFF+ M +L+++D + +HL  +P SL  L+N
Sbjct: 464  IPKLPEVFECPDLQSFLLYNKDSSLKIPDNFFSRMKKLKLMDLSNVHLSPMPLSLQCLEN 523

Query: 298  LQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL----------- 346
            LQTL LD C L D+A IG+LKKL +L+  GS M +L  E+G+LT+L+LL           
Sbjct: 524  LQTLCLDRCTLEDIAAIGELKKLQVLSFIGSTMVQLPREVGKLTRLQLLDLSRCQKLEVI 583

Query: 347  ---IAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTL 403
               +   L++LEELY+G S ++W   E  DG+R NASL EL  L  L +LE+ I + + L
Sbjct: 584  PKGVLSCLTKLEELYMGNSFVQWESEEH-DGDRNNASLDELKLLPNLVTLELHIINAEIL 642

Query: 404  PRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDL 463
            PRD+ F + L  Y++ IG +W+W +   E S   +L + S   I       + L   +DL
Sbjct: 643  PRDV-FSEKLDLYKVFIGEEWSW-FGKYEASRTLKLKLNSSIEI---EKVKVLLMTTEDL 697

Query: 464  CLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLR 523
             L     +++VLY  DG+GFPQLK L +  +S +  +VD +        AFP LESLL+ 
Sbjct: 698  YLDELEGVRNVLYELDGQGFPQLKHLHIQNSSEIQYIVDCLSMGNHY-IAFPRLESLLVD 756

Query: 524  HLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEV 583
            +L+NL +IC G L + SF K++ ++VE C+ LKN+F   + RGL QL+ I+V+ C  +E 
Sbjct: 757  NLNNLGQICYGQLMSGSFSKLRKLKVEHCNALKNLFYFSMFRGLVQLEEIDVSSCNIMEE 816

Query: 584  IFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILE--CP 641
            I   E  D+S     ++I+  +L TL L  LP+ TSFC+         ++KL  L+  C 
Sbjct: 817  IVVEEIEDDSGRD--EIIKPIRLRTLTLEYLPRFTSFCSQ-------RMQKLAGLDAGCA 867

Query: 642  QVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILK 701
            Q+     I E+    F              G+++                   +   +L 
Sbjct: 868  QI-----ISETPSVLF--------------GQKI-------------------EFSNLLN 889

Query: 702  QESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLK 761
             + S  NN+E  +I+   N +   PSS   QNLT++ V+ C  +  + TSS  ++L +L+
Sbjct: 890  LKLSSINNME--KIW--RNQVKEPPSSV--QNLTSLIVEGCGKLSYLFTSSMVENLSQLE 943

Query: 762  QMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFP 821
             ++I  C  + EI+V +     N   ++ I    L  L+L SL +L  FC  N    + P
Sbjct: 944  YLEISDCSFMEEIIVAEGLTKHNSKLHFPI----LHTLKLKSLPNLIRFCFGN--LIECP 997

Query: 822  SLERLVVEDCPNMSIFSGGELST 844
            SL  L +E+CP +  F     ST
Sbjct: 998  SLNALRIENCPRLLKFISSSAST 1020

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 334/894 (37%), Positives = 485/894 (54%), Gaps = 110/894 (12%)

Query: 3    GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVK 62
            GCK+L+T+R+ +VLS +M   +N  V VL  +EAW+ FEKM G  ++N  ++ VA E+ K
Sbjct: 275  GCKILMTSRNKNVLSREMGANRNFQVQVLPVREAWNFFEKMVGVTVKNPSVQPVAAEVAK 334

Query: 63   ECAGLPIAILPVAKALKNKSSLYVWKDALRQLK---NKSLLGAAYSSLELSYYHLEDEDL 119
             CAGLPI +  VA+ALKN+  LY WKDAL+QL       +    YS LELSY     + L
Sbjct: 335  RCAGLPILLATVARALKNED-LYAWKDALKQLTRFDKDEIDNQVYSCLELSY-----KAL 388

Query: 120  GGEELRKTFLLIG--YSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCL 177
             G+E++  FLL G   +Y  ++ DLL + +GL LF+  +T++EAR+R  TLVD+LK SCL
Sbjct: 389  RGDEIKSLFLLCGQFLTYDSSISDLLKYAIGLDLFKGRSTLEEARNRLRTLVDELKASCL 448

Query: 178  LLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISLNNS 237
            LL G +     MHDVV+  A S+ASRD HV  V +E      WP  DVL+  TAISL   
Sbjct: 449  LLEGDKDGRVKMHDVVQSFAFSVASRDHHVLIVADE---FKEWPTSDVLQQYTAISLPYR 505

Query: 238  NINELPQGFECPQLKYFRIHN-DHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQ 296
             I +LP   ECP L  F + N D SL+IPDNFF  M EL+VLD TR++L  LPSSL  L+
Sbjct: 506  KIPDLPAILECPNLNSFILLNKDPSLQIPDNFFREMKELKVLDLTRVNLSPLPSSLQFLE 565

Query: 297  NLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQL---------RL-L 346
            NLQTL LD C L D++I+G+LKKL +L+L  SD+  L  EIG+LT+L         RL +
Sbjct: 566  NLQTLCLDGCVLEDISIVGELKKLKVLSLISSDIVCLPREIGKLTRLLLLDLSNCERLEV 625

Query: 347  IAP----ILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKT 402
            I+P     L+RLEELY+G S ++W + EG   +R NA L EL  LS L +L + I D   
Sbjct: 626  ISPNVLSSLTRLEELYMGNSFVKW-ETEGSSSQRNNACLSELKRLSNLITLHMQITDADN 684

Query: 403  LPRDLSF-FKMLQRYRILIGSQWTWD--YISSEISEI---FRLMVASGANICLNGG---H 453
            + +DLSF F+ L+R+RI IG  W W   Y +S   ++     + +    N  L      H
Sbjct: 685  MLKDLSFLFQKLERFRIFIGDGWDWSVKYATSRTLKLKLNTVIQLEEWVNTLLKSTEELH 744

Query: 454  IMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTA 513
            + +LKG+           KS+L   DGE FP+LK L V     +  +++++       TA
Sbjct: 745  LQELKGV-----------KSILNDLDGEDFPRLKHLHVQNCPGVQYIINSIRMGP--RTA 791

Query: 514  FPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSI 573
            F  L+SL L +L NLEKIC G L AES  K++ ++VE C +LKN+F + + R L +L+ I
Sbjct: 792  FLNLDSLFLENLDNLEKICHGQLMAESLGKLRILKVESCHRLKNLFSVSMARRLVRLEEI 851

Query: 574  EVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLE 633
             +  C+ +E + A E   E+  ++ + IE  QL  L L  LPQ TSF +           
Sbjct: 852  TIIDCKIMEEVVAEE--SENDTADGEPIEFAQLRRLTLQCLPQFTSFHSN---------- 899

Query: 634  KLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFH 693
            + + L    V+ K  +  +      ++         ++ + LF  +E+   + IK     
Sbjct: 900  RRQKLLASDVRSKEIVAGNELGTSMSL---------FNTKILFPNLEDLKLSSIKVEKIW 950

Query: 694  PDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSST 753
             D   +   +     NL  + +  C NL  L+ S                        S 
Sbjct: 951  HDQPAV---QPPCVKNLASMVVESCSNLNYLLTS------------------------SM 983

Query: 754  AKSLVRLKQMKIFHCKMITEIVVDDD-EEGDNYAANYEIVFSELKELRLSSLESLTSFCS 812
             +SL +L++++I +C+ + EIVV +   EG   +   +++F +L  L LS L  LT FC+
Sbjct: 984  VESLAQLERLEICNCESMEEIVVPEGIGEGKMMS---KMLFPKLHLLELSGLPKLTRFCT 1040

Query: 813  VNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQWDDEKRWAWKDD 866
             N    +  SL+ L+V +CP +  F    +S P+   V +    D  + A+ DD
Sbjct: 1041 SN--LLECHSLKVLMVGNCPELKEF----ISIPSSADVPVMSKPDNTKSAFFDD 1088

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083434|ref|XP_002307025.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222856474|gb|EEE94021.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 334/861 (38%), Positives = 480/861 (55%), Gaps = 89/861 (10%)

Query: 3    GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVK 62
            GCK+L+T+R  DVLS  MD QKN  ++ L+ +E W LF+KM GD +E+ +L+S+A E+ K
Sbjct: 283  GCKMLVTSREFDVLSCGMDIQKNFPINALSEEETWELFKKMAGDHVEHPDLQSLAIEVAK 342

Query: 63   ECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAA------YSSLELSYYHLED 116
             CAGLP+AI+ VA+ALKNK +L  WK+ALR+LK  S    A      Y+++ELSY HLE 
Sbjct: 343  MCAGLPVAIVTVARALKNK-NLSQWKNALRELKRPSPRNFAGVQEDVYAAIELSYNHLE- 400

Query: 117  EDLGGEELRKTFLLIG-YSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNS 175
                 +EL+ TFLL     Y  + +DLL +GMGLGLF    TV+EA+DR H+LV KLK S
Sbjct: 401  ----SKELKSTFLLCSRMGYNASTRDLLKYGMGLGLFSGFVTVEEAQDRVHSLVHKLKAS 456

Query: 176  CLLLGGWRSEW-FSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISL 234
             LLL    S+W FSMHD VRDVAISIA RD HVF   +EV P   W  K++LK    I L
Sbjct: 457  GLLLEN-HSDWQFSMHDAVRDVAISIAFRDCHVFVGGDEVEP--KWSAKNMLKKYKEIWL 513

Query: 235  NNSNINELPQGFECPQLKYFRIHN-DHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLG 293
             +SNI EL +  E PQLK+  + + D SL+I  N   GM +L+VL  T + L++LPS L 
Sbjct: 514  -SSNI-ELLREMEYPQLKFLHVRSEDPSLEISSNICRGMHKLKVLVLTNISLVSLPSPLH 571

Query: 294  LLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL------- 346
             L+NL+TL L    LG++A IG+LKKL IL+   S++K L  +IGQLT+LR+L       
Sbjct: 572  FLKNLRTLCLHQSSLGEIADIGELKKLEILSFAKSNIKHLPRQIGQLTKLRMLDLSDCFE 631

Query: 347  ---IAP----ILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQD 399
               I P     LS LEEL +G S   W   EG D    NASL EL++L  LT+++I + D
Sbjct: 632  LDVIPPNIFSNLSMLEELCMGNSFHHWA-TEGED----NASLVELDHLPHLTNVDIHVLD 686

Query: 400  EKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKG 459
               + + +   K L+R+RI IG  W WD +   +  +   +  S +N  L  G +M LK 
Sbjct: 687  SHVMSKGM-LSKRLERFRIFIGDVWDWDGVYQSLRTLKLKLNTSASN--LEHGVLMLLKR 743

Query: 460  IKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLES 519
             +DL L     + +V+   D EGF QL+ L +  +S++  +++T       +  FPVLES
Sbjct: 744  TQDLYLLELKGVNNVVSELDTEGFLQLRHLHLHNSSDIQYIINTSSEFP--SHVFPVLES 801

Query: 520  LLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQ 579
            L L +L +LEK+C G L AESF K+  I V  C KLK++FP  + RGL QLQ+I ++ C 
Sbjct: 802  LFLYNLVSLEKLCHGILTAESFRKLTIIEVGNCVKLKHLFPFSVARGLSQLQTINISFCL 861

Query: 580  NLEVIFAAERGDESSNSNTQ--VIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKI 637
             +E +  AE GDE  +S T+  V+E  QL++L L  LP L +FC+ +        +   +
Sbjct: 862  TMEEV-VAEEGDEFEDSCTEIDVMEFNQLSSLSLQCLPHLKNFCSREKTSRLCQAQLNPV 920

Query: 638  LECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLK 697
                 ++ K    +  +   + +++ C E       +  E V   V  +  G        
Sbjct: 921  ATSVGLQSKEISEDEPR---NPLQLFC-EKILIPKLKKLELVSINVEKIWHG-------- 968

Query: 698  QILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSL 757
            Q+ ++ +    NL+ L +  C +L  L                         + S  KSL
Sbjct: 969  QLHRENTFPVQNLQTLYVDDCHSLKYL------------------------FSPSMVKSL 1004

Query: 758  VRLKQMKIFHCKMITEIV-VDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNC 816
            V+LK + + +CK + EI+ V+  EEG+  +   E+ F +L+++ LS L  LT FC+    
Sbjct: 1005 VQLKYLTVRNCKSMEEIISVEGVEEGEMMS---EMCFDKLEDVELSDLPRLTWFCA--GS 1059

Query: 817  AFKFPSLERLVVEDCPNMSIF 837
              K   L++L +  CP    F
Sbjct: 1060 LIKCKVLKQLYICYCPEFKTF 1080

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  451 bits (1159), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 332/923 (35%), Positives = 482/923 (52%), Gaps = 122/923 (13%)

Query: 3    GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVK 62
            GCK++LT+R+  +LS++M  QK+  V+ L  +EA  LF+KM GD IE  +L+S+A ++ K
Sbjct: 280  GCKMVLTSRNKHILSNEMGTQKDFPVEHLQEEEALILFKKMAGDSIEEPDLQSIAIDVAK 339

Query: 63   ECAGLPIAILPVAKALKNKSSLYVWKDALRQLKN------KSLLGAAYSSLELSYYHLED 116
            ECAGLPIAI+ VAKALKNK  L +W+DALRQLK       K +    YS+LELSY HLE 
Sbjct: 340  ECAGLPIAIVTVAKALKNKG-LSIWEDALRQLKRSIPTNIKGMDAMVYSTLELSYKHLE- 397

Query: 117  EDLGGEELRKTFLLIG-YSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNS 175
                G+E++  FLL G  S    + DLL +GMGL LFQ  NT++EA++R  TLVD LK S
Sbjct: 398  ----GDEVKSLFLLCGLMSNKIYIDDLLKYGMGLRLFQGTNTLEEAKNRIDTLVDSLKAS 453

Query: 176  CLLLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISLN 235
             LLL    + +  MHDVVRDVAI+I S+   VF++  +   L  WP  D L+ CT +SL 
Sbjct: 454  KLLLDTGHNSFVRMHDVVRDVAIAIVSKVHRVFSLRED--ELVEWPKMDELQTCTKMSLA 511

Query: 236  NSNINELPQGFECPQLKYFRIHN--DHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLG 293
             ++I ELP    CP+L+ F  ++  D+ LKIP+ FF  M +L+VLD + MH  +LPSSL 
Sbjct: 512  YNDICELPIELVCPELELFLFYHTIDYHLKIPETFFEEMKKLKVLDLSNMHFTSLPSSLR 571

Query: 294  LLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL------- 346
             L NL+TLSL++C+LGD++II +LKKL   +  GS++++L  EI QLT LRL        
Sbjct: 572  CLTNLRTLSLNWCKLGDISIIVELKKLEFFSFMGSNIEKLPREIAQLTHLRLFDLRDCSK 631

Query: 347  ---IAP----ILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQD 399
               I P     LS+LE L +  S   W +VEG    + NAS+ E   L  LT+L+I I D
Sbjct: 632  LREIPPNVISSLSKLENLCMENSFTLW-EVEG----KSNASIAEFKYLPYLTTLDIQIPD 686

Query: 400  EKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKG 459
             + L  D+ F K++ RYRI IG  W+WD  +   ++  +L      ++ L  G  + LKG
Sbjct: 687  AELLLTDVLFEKLI-RYRIFIGDVWSWDK-NCPTTKTLKLNKLD-TSLRLADGISLLLKG 743

Query: 460  IKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLES 519
             KDL L       +V    D EGF QLK L V ++  +  +++++D   +   AFPVLES
Sbjct: 744  AKDLHLRELSGAANVFPKLDREGFLQLKCLHVERSPEMQHIMNSMDPILS-PCAFPVLES 802

Query: 520  LLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQ 579
            L L  L NL+++C G L   SF  ++ ++VE+CD LK +F + + RGL +L+ IE+T C+
Sbjct: 803  LFLNQLINLQEVCHGQLLVGSFSYLRIVKVEYCDGLKFLFSMSMARGLSRLEKIEITRCK 862

Query: 580  NLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCT----------------- 622
            N+  + A  +G E  +     I   +L  L L  LP+L +FC                  
Sbjct: 863  NMYKMVA--QGKEDGDDAVDAILFAELRYLTLQHLPKLRNFCLEGKTMPSTTKRSPTTNV 920

Query: 623  -------------------------GDLHFEFPSLEKLKILECPQVKFKSTIHESTKKRF 657
                                     G L   F +L+ LKI  C        +  S  +  
Sbjct: 921  RFNGICSEGELDNQTSVFNQLEGWHGQLLLSFCNLQSLKIKNC--ASLLKVLPPSLLQNL 978

Query: 658  HTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYG 717
              ++VL +E YD     LF                          E +   +LE+L I G
Sbjct: 979  QNLEVLIVENYDIPVAVLF-------------------------NEKAALPSLELLNISG 1013

Query: 718  CDNLI----NLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITE 773
             DN+     N +P   SF  L  V V  C  ++NI  SS  K L  L+ +K   C  + E
Sbjct: 1014 LDNVKKIWHNQLPQD-SFTKLKDVKVASCGQLLNIFPSSMLKRLQSLQFLKAVDCSSLEE 1072

Query: 774  IVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVN-NCAFKFPSLERLVVEDCP 832
            +    D EG N      +  ++L +L L  L  +    +        F +L+ ++++ C 
Sbjct: 1073 VF---DMEGIN--VKEAVAVTQLSKLILQFLPKVKQIWNKEPRGILTFQNLKSVMIDQCQ 1127

Query: 833  NMSIFSGGELSTPNLRKVQLKQW 855
            ++       L    ++  +L+ W
Sbjct: 1128 SLKNLFPASLVRDLVQLQELQVW 1150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143316|ref|XP_002336027.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222838884|gb|EEE77235.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 331/886 (37%), Positives = 475/886 (53%), Gaps = 94/886 (10%)

Query: 3    GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVK 62
            GCK+L+T+R+ ++LS +M   +N  + +L  +EAW+ FEKM G  ++N  ++ VA E+ K
Sbjct: 275  GCKILMTSRNKNILSREMGANRNFQIQILPVREAWNFFEKMVGVTVKNPSVQLVAAEVAK 334

Query: 63   ECAGLPIAILPVAKALKNKSSLYVWKDALRQLK---NKSLLGAAYSSLELSYYHLEDEDL 119
             CAGLPI +  VA+ALKN+  LY WK+AL QL       +   AYS LELSY  L D+  
Sbjct: 335  RCAGLPILLATVARALKNED-LYAWKEALTQLTRFDKDDIDKTAYSCLELSYKALRDD-- 391

Query: 120  GGEELRKTFLLIG--YSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCL 177
               E++  FLL G   +Y   + DLL + +GL LF+  +T +EAR+R HTLVD+LK SCL
Sbjct: 392  ---EIKSLFLLCGQILTYDALISDLLKYAIGLDLFKGRSTSEEARNRLHTLVDELKASCL 448

Query: 178  LLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISLNNS 237
            LL G       MHDVVR  AIS+A RD HV  V +E      WP  DVL+  TAISL   
Sbjct: 449  LLEGDNDGSVKMHDVVRSFAISVALRDHHVLIVADE---FKEWPTNDVLQQYTAISLPFR 505

Query: 238  NINELPQGFECPQLKYFRI-HNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQ 296
             I +LP   ECP L  F +   D SL+IP+NFF  M EL+VLD T ++L  LPSSL  L+
Sbjct: 506  KIPDLPAILECPNLNSFLLLSTDPSLQIPENFFREMKELKVLDLTGVNLSPLPSSLQFLE 565

Query: 297  NLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQL---------RL-L 346
            NLQTL LD+C L D++I+G+LKKL +L+L GSD+  L  EIG+LT+L         RL +
Sbjct: 566  NLQTLCLDFCVLEDISIVGELKKLKVLSLMGSDIVCLPREIGKLTRLLLLDLSNCERLEV 625

Query: 347  IAP----ILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKT 402
            I+P     L+RLEELY+G S ++W + EG   ER +A L EL  L+ L +L++ I D   
Sbjct: 626  ISPNVLSSLTRLEELYMGNSFLKW-EAEGPSSERNSACLSELKLLANLITLDMQITDADH 684

Query: 403  LPRDLSF-FKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIK 461
            +P+DL   F+ L+R+RI IG  W W  +    S   +L +     I L       LK  +
Sbjct: 685  MPKDLFLCFQKLERFRIFIGDGWDWS-VKYATSRTLKLKL--NTVIQLEERVNTLLKITE 741

Query: 462  DLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLL 521
            +L L     +KS+L   D EGF QLK L V     +  +++++       TAF  L+SL 
Sbjct: 742  ELHLQELNGVKSILNDLDEEGFCQLKDLHVQNCPGVQYIINSMRMGP--RTAFLNLDSLF 799

Query: 522  LRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNL 581
            L +L NLEKIC G L AES   ++ ++VE C +LKN+F + I R + +L+ I +  C+ +
Sbjct: 800  LENLDNLEKICHGQLMAESLGNLRILKVESCHRLKNLFSVSIARRVVRLEEITIIDCKIM 859

Query: 582  EVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECP 641
            E + A E   E+  ++ + IE TQL  L L  LPQ TSF +           + + L   
Sbjct: 860  EEVVAEE--SENDTADGEPIEFTQLRRLTLQCLPQFTSFHSN----------RRQKLLAS 907

Query: 642  QVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILK 701
             V+ K  +  +      ++         ++ + LF  +E+ + + IK      D   +  
Sbjct: 908  DVRSKEIVAGNELGTSMSL---------FNTKILFPKLEDLMLSSIKVEKIWHDQHAV-- 956

Query: 702  QESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLK 761
             +     NL  + +  C NL  L                        LTSS  +SL +LK
Sbjct: 957  -QPPCVKNLASIVVESCSNLNYL------------------------LTSSMVESLAQLK 991

Query: 762  QMKIFHCKMITEIVVDDD-EEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKF 820
             ++I +CK + EIVV +   EG   +   +++F +L  L L  L  LT FC+ N    + 
Sbjct: 992  SLEICNCKSMEEIVVPEGIGEGKMMS---KMLFPKLHILSLIRLPKLTRFCTSN--LLEC 1046

Query: 821  PSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQWDDEKRWAWKDD 866
             SL+ L +  CP +  F    +S P+   V      D  + A  DD
Sbjct: 1047 HSLKVLTLGKCPELKEF----ISIPSSADVPAMSKPDNTKSALFDD 1088

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 320/871 (36%), Positives = 475/871 (54%), Gaps = 125/871 (14%)

Query: 3    GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVK 62
            GCK++LT+R+  VLS++M  QK+  V  L   E W LF+   GD IEN EL+ +A ++ K
Sbjct: 277  GCKLVLTSRNKQVLSNEMSTQKDFRVQHLQEDETWILFKNTAGDSIENPELQPIAVDVAK 336

Query: 63   ECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKS------LLGAAYSSLELSYYHLED 116
            ECAGLPIAI+ VAKALKNK+ + +WKDAL+QL +++      +    YSSL+LSY HLE 
Sbjct: 337  ECAGLPIAIVTVAKALKNKN-VSIWKDALQQLNSQTSTNITGMETKVYSSLKLSYEHLE- 394

Query: 117  EDLGGEELRKTFLLIG----YSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKL 172
                G+E++  FLL G    Y YIR   DLL +GMGL LFQ  NT++EA++R  TLVD L
Sbjct: 395  ----GDEVKSLFLLCGLFSNYIYIR---DLLKYGMGLRLFQGTNTLEEAKNRIDTLVDNL 447

Query: 173  KNSCLLLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAI 232
            K+S LLL    +    MHDVVR VA+ I+S+D HVF ++     +  WP  D L+    +
Sbjct: 448  KSSNLLLETGHNAVVRMHDVVRSVALDISSKDHHVFTLQQTTGRVEKWPRIDELQKVIWV 507

Query: 233  SLNNSNINELPQGFECPQLKYFR--IHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS 290
            + +  +I+ELP+G  CP+LK F   +  + ++KIP+ FF GM +L+VLDFT+MHL +LPS
Sbjct: 508  NQDECDIHELPEGLVCPKLKLFICCLKTNSAVKIPNTFFEGMKQLQVLDFTQMHLPSLPS 567

Query: 291  SLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL---- 346
            SL  L NLQTL L  C+LGD+ II +LKKL IL+L  SD+++L  EI QLT LRLL    
Sbjct: 568  SLQCLANLQTLLLYGCKLGDIGIITELKKLEILSLIDSDIEQLPREIAQLTHLRLLDLSD 627

Query: 347  ----------IAPILSRLEELYIGESPIEWGKVEGVDGE-RRNASLHELNNLSKLTSLEI 395
                      +   LS+LE+L +  S  +W      +GE + NA L EL +LS LTSL+I
Sbjct: 628  SSTIKVIPSGVISSLSQLEDLCMENSFTQW------EGEGKSNACLAELKHLSHLTSLDI 681

Query: 396  LIQDEKTLPRDLSFFKMLQRYRILIGSQWTWD--YISSEISEIFRLMVASGANICLNGGH 453
             I D K LP+D+  F+ L RYRI +G  W W+  Y ++   ++ +       ++ L  G 
Sbjct: 682  QIPDAKLLPKDV-VFENLVRYRIFVGDVWIWEENYKTNRTLKLKKF----DTSLHLVDGI 736

Query: 454  IMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTA 513
               LK  +DL L       +VL   DGEGF +LK L V  +  +  +V+++D  T+   A
Sbjct: 737  SKLLKITEDLHLRELCGGTNVLSKLDGEGFFKLKHLNVESSPEIQYIVNSLD-LTSPHGA 795

Query: 514  FPVLESLLLRHLSNLEKICRGPLAAE-----SFCKVKDIRVEWCDKLKNVFPLVIGRGLQ 568
            FPV+E+L L  L NL+++C G    E     SF  ++ + VE CD LK +F L + RGL 
Sbjct: 796  FPVMETLSLNQLINLQEVCHGQFPVESSRKQSFGCLRKVEVEDCDGLKFLFSLSVARGLS 855

Query: 569  QLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFE 628
            QL+ I+VT C+++  + + ER +   +++  V    +L  L L  LP+L++FC       
Sbjct: 856  QLEEIKVTRCKSMVEMVSQERKEIREDADN-VPLFPELRHLTLEDLPKLSNFC------- 907

Query: 629  FPSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIK 688
                E+  +L  P     STI   +    +  ++        DG+ L             
Sbjct: 908  ---FEENPVLPKP----ASTIVGPSTPPLNQPEI-------RDGQLLL------------ 941

Query: 689  GINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINI 748
                            S   NL  L++  C +L+ L P S   QNL  + V+ C  + ++
Sbjct: 942  ----------------SFGGNLRSLKLKNCMSLLKLFPPSL-LQNLEELIVENCGQLEHV 984

Query: 749  -------LTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANY------EIVFSE 795
                   +     + L +LK++++     +  I  +     +++ ++        I+F +
Sbjct: 985  FDLEELNVDDGHVELLPKLKELRLIGLPKLRHI-CNCGSSRNHFPSSMASAPVGNIIFPK 1043

Query: 796  LKELRLSSLESLTSFCSVNNCAFKFPSLERL 826
            L ++ L SL +LTSF S       + SL+RL
Sbjct: 1044 LSDITLESLPNLTSFVSPG-----YHSLQRL 1069

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	878
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.411	0.392	0.260	5.4e-29
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.379	0.338	0.270	5.9e-29
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.449	0.434	0.259	1.2e-21
TAIR|locus:2171579	843	AT5G47250 [Arabidopsis thalian	0.376	0.392	0.277	1.7e-21
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.313	0.307	0.275	5.1e-19
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.384	0.381	0.228	2.7e-17
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.381	0.377	0.245	1.4e-16
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.383	0.396	0.25	1.6e-16
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.386	0.381	0.245	5e-16
TAIR|locus:2203881	893	AT1G62630 [Arabidopsis thalian	0.272	0.267	0.25	2.5e-15

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.4e-29, Sum P(2) = 5.4e-29
 Identities = 99/380 (26%), Positives = 168/380 (44%)

Query:     5 KVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKEC 64
             KV+LT+R  +V    M   +NI V  L  KEAW LF    G+   +  +K +A ++  EC
Sbjct:   247 KVVLTSRRLEVCQQMMT-NENIKVACLQEKEAWELFCHNVGEVANSDNVKPIAKDVSHEC 305

Query:    65 AGLPIAILPVAKALKNKSSLYVWKDALRQLKNKS----LLGAAYSSLELSYYHXXXXXXX 120
              GLP+AI+ + + L+ K  + VWK  L  LK  +         + +L+LSY         
Sbjct:   306 CGLPLAIITIGRTLRGKPQVEVWKHTLNLLKRSAPSIDTEEKIFGTLKLSY------DFL 359

Query:   121 XXXXRKTFL---LIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCL 177
                 +  FL   L    Y   V +L+ + +  GL    +  ++  +   TLV++LK+SCL
Sbjct:   360 QDNMKSCFLFCALFPEDYSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVTLVERLKDSCL 419

Query:   178 LLGGWRSEWFSMHDVVRDVAI-SIASRDQHVFAVENEVVPLTSWPDKDVLKDCTAISLNN 236
             L  G   +   MHDVVRD AI  ++S+ +   ++      L  +P    +     +SL  
Sbjct:   420 LEDGDSCDTVKMHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMA 479

Query:   237 SNINELPQG-FECPQLKYFRIH-NDHSLKIPDNFFTGMTELRVLDFTRMHXXXXXXXXXX 294
             + +  LP    E  +     +  N H  ++P+ F      LR+LD + +           
Sbjct:   480 NKLERLPNNVIEGVETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSN 539

Query:   295 XXXXXXXXXDYCE-LGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSR 353
                        C+ L ++  +  L KL  L L  S ++EL   +  L+ LR +      +
Sbjct:   540 LHSLRSLVLRNCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQ 599

Query:   354 LEELYIGESPIEWGKVEGVD 373
             L+ +  G + ++   +E +D
Sbjct:   600 LQSIPAG-TILQLSSLEVLD 618

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
 Identities = 98/362 (27%), Positives = 165/362 (45%)

Query:     3 GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVK 62
             G KV+LT+R  +V  S M    ++ VD L  ++AW LF K  GD + +  ++ +A  + +
Sbjct:   275 GSKVILTSRFLEVCRS-MKTDLDVRVDCLLEEDAWELFCKNAGDVVRSDHVRKIAKAVSQ 333

Query:    63 ECAGLPIAILPVAKALKNKSSLYVWKDALRQLKN-----KSLLGAAYSSLELSYYHXXXX 117
             EC GLP+AI+ V  A++ K ++ +W   L +L       KS+    +  L+LSY      
Sbjct:   334 ECGGLPLAIITVGTAMRGKKNVKLWNHVLSKLSKSVPWIKSIEEKIFQPLKLSY------ 387

Query:   118 XXXXXXXRKTFLLIGY---SYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKN 174
                    +  FLL       Y   V +++ + M  G  + + + +++ +   T V+ LK+
Sbjct:   388 DFLEDKAKFCFLLCALFPEDYSIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKD 447

Query:   175 SCLLLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKDVLKDCTA--- 231
              CLL  G R +   MHDVVRD AI I S  Q     ++  + ++    +D+ +D  A   
Sbjct:   448 YCLLEDGDRRDTVKMHDVVRDFAIWIMSSSQD----DSHSLVMSGTGLQDIRQDKLAPSL 503

Query:   232 --ISLNNSNINELPQGFE--CPQLKYFRIHNDHSLK-IPDNFFTGMTELRVLDF--TRMH 284
               +SL N+ +  LP   E  C +     +  +  LK +P  F      LR+L+   TR+ 
Sbjct:   504 RRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNFLLKEVPIGFLQAFPTLRILNLSGTRIK 563

Query:   285 XXXXXXXXXXXXXXXXXXXDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLR 344
                                D  +L  +  +  L KL +L L G+ + E    + +L + R
Sbjct:   564 SFPSCSLLRLFSLHSLFLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFR 623

Query:   345 LL 346
              L
Sbjct:   624 HL 625

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 111/427 (25%), Positives = 183/427 (42%)

Query:     4 CKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLF-EKM-TGDCIENGELKSVATEIV 61
             CKV+ T RS   L + M  +  + V+ L  K AW LF  K+   D +E+  ++ +A  IV
Sbjct:   284 CKVMFTTRSI-ALCNNMGAEYKLRVEFLEKKHAWELFCSKVWRKDLLESSSIRRLAEIIV 342

Query:    62 KECAGLPIAILPVAKALKNKSSLYVWKDALRQLKN--KSLLGAAY--SSLELSYYHXXXX 117
              +C GLP+A++ +  A+ ++ +   W  A   L      + G  Y  + L+ SY +    
Sbjct:   343 SKCGGLPLALITLGGAMAHRETEEEWIHASEVLTRFPAEMKGMNYVFALLKFSYDNLESD 402

Query:   118 XXXXXXXRKTFL---LIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKN 174
                    R  FL   L    +   ++ L+ + +G G   + + V+    + + L+  LK 
Sbjct:   403 LL-----RSCFLYCALFPEEHSIEIEQLVEYWVGEGFLTSSHGVNTIY-KGYFLIGDLKA 456

Query:   175 SCLLLGGWRSEWFSMHDVVRDVAISIASRD---QHVFAVENEVVPLTSWPDKDVLKDCTA 231
             +CLL  G       MH+VVR  A+ +AS     + +  VE  +   T  P  +  +    
Sbjct:   457 ACLLETGDEKTQVKMHNVVRSFALWMASEQGTYKELILVEPSMGH-TEAPKAENWRQALV 515

Query:   232 ISLNNSNINELPQGFECPQLKYFRIHNDHSLK-IPDNFFTGMTELRVLDFTRMHXXXXXX 290
             ISL ++ I  LP+   CP+L    +  + SLK IP  FF  M  LRVLD +         
Sbjct:   516 ISLLDNRIQTLPEKLICPKLTTLMLQQNSSLKKIPTGFFMHMPVLRVLDLSFTSITEIPL 575

Query:   291 XXXXXXXXXXXXXDYCELGDMAI-IGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAP 349
                             ++  +   +G+L+KL  L L+ +   + +         R  I  
Sbjct:   576 SIKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIP--------RDAIC- 626

Query:   350 ILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSF 409
              LS+LE L +  S   W      + E       +L  L  LT+L I +   +TL + L  
Sbjct:   627 WLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLETL-KTLFE 685

Query:   410 FKMLQRY 416
             F  L ++
Sbjct:   686 FGALHKH 692

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2171579 AT5G47250 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.7e-21, Sum P(3) = 1.7e-21
 Identities = 99/357 (27%), Positives = 162/357 (45%)

Query:     5 KVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKEC 64
             KV+ T RS DV S  M   ++I V  L+  +AW LF+ M   C    E+  +A +IV +C
Sbjct:   288 KVVFTTRSKDVCSV-MRANEDIEVQCLSENDAWDLFD-MKVHCDGLNEISDIAKKIVAKC 345

Query:    65 AGLPIAILPVAKALKNKSSLYVWKDALRQLKN--KSLLGAA---YSSLELSYYHXXXXXX 119
              GLP+A+  + K + +KS++  W+ AL  L++    + G     +  L+LSY +      
Sbjct:   346 CGLPLALEVIRKTMASKSTVIQWRRALDTLESYRSEMKGTEKGIFQVLKLSYDYLKTKNA 405

Query:   120 XXXXXRKTFL---LIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSC 176
                   K FL   L   +Y     +L+ + +G G     +  + A+DR + ++D L  + 
Sbjct:   406 ------KCFLYCALFPKAYYIKQDELVEYWIGEGFIDEKDGRERAKDRGYEIIDNLVGAG 459

Query:   177 LLLGGWRSEWFSMHDVVRDVAISIAS--RDQHVFAVENEVVPLTSWPDKDVLKDCTAISL 234
             LLL   +  +  MHD++RD+A+ I S  RD   + V+ +   L+  PD       T +SL
Sbjct:   460 LLLESNKKVY--MHDMIRDMALWIVSEFRDGERYVVKTDA-GLSQLPDVTDWTTVTKMSL 516

Query:   235 NNSNINELPQGFECPQ---LKYFRIHNDHSLKIPDNFFTGMTELRVLDFT-RMHXXXXXX 290
              N+ I  +P   E P    L    + N+  + I   FF  M+ L VLD +          
Sbjct:   517 FNNEIKNIPDDPEFPDQTNLVTLFLQNNRLVDIVGKFFLVMSTLVVLDLSWNFQITELPK 576

Query:   291 XXXXXXXXXXXXXDYCELGDMAI-IGDLKKLVILALRGSDMKELVGEIGQLTQLRLL 346
                              +  +   +G L KL+ L L  +     VG I +L +L++L
Sbjct:   577 GISALVSLRLLNLSGTSIKHLPEGLGVLSKLIHLNLESTSNLRSVGLISELQKLQVL 633

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 5.1e-19, Sum P(3) = 5.1e-19
 Identities = 80/290 (27%), Positives = 124/290 (42%)

Query:     3 GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENG--ELKSVATEI 60
             GCKV+ T RS DV   +M     + V  L   EAW LF+   G+    G  ++  +A ++
Sbjct:   286 GCKVVFTTRSRDVCG-RMRVDDPMEVSCLEPNEAWELFQMKVGENTLKGHPDIPELARKV 344

Query:    61 VKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLE--LSYYHXXXXX 118
               +C GLP+A+  + + +  K  +  W++A+  L   S   A +  +E  L         
Sbjct:   345 AGKCCGLPLALNVIGETMACKRMVQEWRNAIDVL---SSYAAEFPGMEQILPILKYSYDN 401

Query:   119 XXXXXXRKTFL---LIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNS 175
                   +  FL   L    Y    + L+ + +  G      + + A  + + ++  L  +
Sbjct:   402 LNKEQVKPCFLYCSLFPEDYRMEKERLIDYWICEGFIDENESRERALSQGYEIIGILVRA 461

Query:   176 CLLLG-GWRSEWFSMHDVVRDVAISIASR-DQHVFAVENEV-VPLTSWPDKDVLKDCTAI 232
             CLLL      E   MHDVVR++A+ IAS   +H      +V V L   P          +
Sbjct:   462 CLLLEEAINKEQVKMHDVVREMALWIASDLGEHKERCIVQVGVGLREVPKVKNWSSVRRM 521

Query:   233 SLNNSNINELPQGFECPQLK-YFRIHNDHSLKIPDNFFTGMTELRVLDFT 281
             SL  + I  L    EC +L   F   ND  L I D FF  +  L VLD +
Sbjct:   522 SLMENEIEILSGSPECLELTTLFLQKNDSLLHISDEFFRCIPMLVVLDLS 571

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
 Identities = 82/359 (22%), Positives = 150/359 (41%)

Query:     3 GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCI--ENGELKSVATEI 60
             GCKV  T  S +V   +M     + +  L+   AW L +K  G+     + ++  +A ++
Sbjct:   286 GCKVAFTTHSKEVCG-RMGVDNPMEISCLDTGNAWDLLKKKVGENTLGSHPDIPQLARKV 344

Query:    61 VKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHXXXXXXX 120
              ++C GLP+A+  + + +  K ++  W+ A   L + +        + L           
Sbjct:   345 SEKCCGLPLALNVIGETMSFKRTIQEWRHATEVLTSATDFSGMEDEI-LPILKYSYDSLN 403

Query:   121 XXXXRKTFL---LIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCL 177
                 +  FL   L    +    + L+ + +  G  +     ++A ++ + ++  L  S L
Sbjct:   404 GEDAKSCFLYCSLFPEDFEIRKEMLIEYWICEGFIKEKQGREKAFNQGYDILGTLVRSSL 463

Query:   178 LLGGWRS-EWFSMHDVVRDVAISIASR-DQHVF-AVENEVVPLTSWPDKDVLKDCTAISL 234
             LL G +  +  SMHD+VR++A+ I S   +H    +    + L   P+ +  +    +SL
Sbjct:   464 LLEGAKDKDVVSMHDMVREMALWIFSDLGKHKERCIVQAGIGLDELPEVENWRAVKRMSL 523

Query:   235 NNSNINELPQGFECPQLKYFRIHNDHSL-KIPDNFFTGMTELRVLDFTRMHXXXXXXXXX 293
              N+N  ++    EC +L    + N++ L  I   FF  M  L VLD +  H         
Sbjct:   524 MNNNFEKILGSPECVELITLFLQNNYKLVDISMEFFRCMPSLAVLDLSENHSLSELPEEI 583

Query:   294 XXXXXXXXXXDYCELGDMAI------IGDLKKLVILALRGSDMKELVGEIGQLTQLRLL 346
                        Y +L    I      + +L+KLV L L  +   E +  I  L+ LR L
Sbjct:   584 SELVSL----QYLDLSGTYIERLPHGLHELRKLVHLKLERTRRLESISGISYLSSLRTL 638

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
 Identities = 88/358 (24%), Positives = 158/358 (44%)

Query:     3 GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCI--ENGELKSVATEI 60
             GCK++ T R  ++   +M    ++ V  L   +AW LF K  G+     + E+ +VA  +
Sbjct:   284 GCKIVFTTRLKEICG-RMGVDSDMEVRCLAPDDAWDLFTKKVGEITLGSHPEIPTVARTV 342

Query:    61 VKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHXXXXXXX 120
              K+C GLP+A+  + + +  K ++  W+ A+  L + +   A +S +E            
Sbjct:   343 AKKCRGLPLALNVIGETMAYKRTVQEWRSAIDVLTSSA---AEFSGMEDEILPILKYSYD 399

Query:   121 XXXXRKTFLLIGYSYI----RNVK--DLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKN 174
                  +  L   Y  +     N++  DL+ + +G G F + N   +A ++ + ++  L  
Sbjct:   400 NLKSEQLKLCFQYCALFPEDHNIEKNDLVDYWIGEG-FIDRNK-GKAENQGYEIIGILVR 457

Query:   175 SCLLLGGWRSEWFSMHDVVRDVAISIAS---RDQHVFAVENEVVPLTSWPDKDVLKDCTA 231
             SCLL+     E   MHDVVR++A+ IAS   + +  F V+  +    + P+ +  K    
Sbjct:   458 SCLLMEE-NQETVKMHDVVREMALWIASDFGKQKENFIVQAGLQS-RNIPEIEKWKVARR 515

Query:   232 ISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTR---MHXXXX 288
             +SL  +NI  +    E PQL    +  +    I  +FF  M  L VLD +    +     
Sbjct:   516 VSLMFNNIESIRDAPESPQLITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPN 575

Query:   289 XXXXXXXXXXXXXXXDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL 346
                                +    ++ +L+KL+ L L  + M E +  I  LT L++L
Sbjct:   576 EISECVSLQYLSLSRTRIRIWPAGLV-ELRKLLYLNLEYTRMVESICGISGLTSLKVL 632

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
 Identities = 90/360 (25%), Positives = 154/360 (42%)

Query:     3 GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDC-IENGE-LKSVATEI 60
             G K++ T RS DV    M+    + VD L   EAW LF+K  G   +++ E + ++A ++
Sbjct:   283 GSKIVFTTRSKDVCRD-MEVDGEMKVDCLPPDEAWELFQKKVGPIPLQSHEDIPTLARKV 341

Query:    61 VKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHXXXXXXX 120
              ++C GLP+A+  + KA+ ++ ++  W+  +  L + S    +     L           
Sbjct:   342 AEKCCGLPLALSVIGKAMASRETVQEWQHVIHVLNSSSHEFPSMEEKILPVLKFSYDDLK 401

Query:   121 XXXXRKTFL---LIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCL 177
                 +  FL   L    Y    ++L+ + M  G        D A ++ H ++  L  + L
Sbjct:   402 DEKVKLCFLYCSLFPEDYEVRKEELIEYWMCEGFIDGNEDEDGANNKGHDIIGSLVRAHL 461

Query:   178 LLGGWRSEWFSMHDVVRDVAISIAS---RDQHVFAVENEVVPLTSWPDKDV-LKDCTAIS 233
             L+ G  +    MHDV+R++A+ IAS   + +    V+  V  L   P KD+  +    +S
Sbjct:   462 LMDGELTTKVKMHDVIREMALWIASNFGKQKETLCVKPGV-QLCHIP-KDINWESLRRMS 519

Query:   234 LNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHXXXXXXXXX 293
             L  + I  +      P L    + N+  + I  +FF  M  L VLD +R           
Sbjct:   520 LMCNQIANISSSSNSPNLSTLLLQNNKLVHISCDFFRFMPALVVLDLSR----NSSLSSL 575

Query:   294 XXXXXXXXXXDYCELGDMAI------IGDLKKLVILALRGSD-MKELVGEIGQLTQLRLL 346
                        Y  L    I        +LKKL+ L L  +D ++ +VG    L  L++L
Sbjct:   576 PEAISKLGSLQYINLSTTGIKWLPVSFKELKKLIHLNLEFTDELESIVGIATSLPNLQVL 635

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
 Identities = 88/358 (24%), Positives = 150/358 (41%)

Query:     3 GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCI--ENGELKSVATEI 60
             GCKV  T RS DV   +M     + V  L  +E+W LF+   G      + ++  +A ++
Sbjct:   286 GCKVAFTTRSRDVCG-RMGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKV 344

Query:    61 VKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHXXXXXXX 120
              ++C GLP+A+  + +A+  K +++ W  A+  L + ++    +S +E    H       
Sbjct:   345 ARKCRGLPLALNVIGEAMACKRTVHEWCHAIDVLTSSAI---DFSGMEDEILHVLKYSYD 401

Query:   121 XXXX---RKTFL---LIGYSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKN 174
                    +  FL   L    Y+ + + L+ + +  G        +   ++ + ++  L  
Sbjct:   402 NLNGELMKSCFLYCSLFPEDYLIDKEGLVDYWISEGFINEKEGRERNINQGYEIIGTLVR 461

Query:   175 SCLLLGGWRSEW-FSMHDVVRDVAISIASR--DQHVFAVENEVVPLTSWPDKDVLKDCTA 231
             +CLLL   R++    MHDVVR++A+ I+S    Q    +    V L   P          
Sbjct:   462 ACLLLEEERNKSNVKMHDVVREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRK 521

Query:   232 ISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHXXXXX-X 290
             ISL N+ I E+    EC  L    +  +  +KI   FF  M  L VLD +          
Sbjct:   522 ISLMNNEIEEIFDSHECAALTTLFLQKNDVVKISAEFFRCMPHLVVLDLSENQSLNELPE 581

Query:   291 XXXXXXXXXXXXXDYCELGDMAI-IGDLKKLVILALRG-SDMKELVGEIGQLTQLRLL 346
                           Y  +  + + +  LKKL+ L L   S +  ++G I  L  LR L
Sbjct:   582 EISELASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILG-ISNLWNLRTL 638

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2203881 AT1G62630 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
 Identities = 67/268 (25%), Positives = 124/268 (46%)

Query:     3 GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGE--LKSVATEI 60
             GCK+  T+RS +V +S  D ++ + V  L    A+ LF+K  G      +  +  +A  +
Sbjct:   282 GCKLAFTSRSLNVCTSMGD-EEPMEVQCLEENVAFDLFQKKVGQKTLGSDPGIPQLARIV 340

Query:    61 VKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKS--LLGAAYSSLELSYYHXXXXX 118
              K+C GLP+A+  + + +  K ++  W++A+  L + +   +G     L L  Y      
Sbjct:   341 AKKCCGLPLALNVIGETMSCKRTIQEWRNAIHVLNSYAAEFIGMEDKILPLLKYSYDNLK 400

Query:   119 XXXXXXRKTFLLIGYSYIRNVK----DLLYHGMGLGLFQNINTVDEARDRAHTLVDKLKN 174
                    K+ LL    Y  + K    DL+ H +   +      +++A D+ + ++  L  
Sbjct:   401 GEHV---KSSLLYCALYPEDAKIRKEDLIEHWICEEIIDGSEGIEKAEDKGYDIIGSLVR 457

Query:   175 SCLLLGGWRSEWFS---MHDVVRDVAISIASR---DQHVFAVE-----NEVVPLTSWPDK 223
             + LL+     +  S   MHDVVR++A+ IAS     +  F V       E+  + +W   
Sbjct:   458 ASLLMECVDLKGKSSVIMHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKVKNW--- 514

Query:   224 DVLKDCTAISLNNSNINELPQGFECPQL 251
             +V++    +SL  + I+ L   +EC +L
Sbjct:   515 NVVR---RMSLMGNKIHHLVGSYECMEL 539

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	878
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	3e-15

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 3   GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTG--DCIENGELKSVATEI 60
           G +V++T RS  V        K   V+ L  +E+W LF       +     EL+ VA EI
Sbjct: 128 GSRVIVTTRSESVAGRMGGTSKPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEI 187

Query: 61  VKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNK----SLLGAAYSSLELSYYHLED 116
           V++C GLP+A+  +   L  KS++  W+  L QL N+      L    S L LSY +L  
Sbjct: 188 VEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNELAGRDGLNEVLSILSLSYDNLPM 247

Query: 117 E 117
            
Sbjct: 248 H 248

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	878
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.88
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.86
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.85
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.83
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.81
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.53
KOG4341	483	consensus F-box protein containing LRR [General fu	99.43
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.42
KOG4341	483	consensus F-box protein containing LRR [General fu	99.42
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.4
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.4
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.38
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.36
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.35
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.3
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.98
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.88
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.81
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.67
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.62
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.57
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.55
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.53
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.52
PRK15386	426	type III secretion protein GogB; Provisional	98.49
PRK15386	426	type III secretion protein GogB; Provisional	98.35
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.3
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.3
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.3
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.27
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.24
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.21
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.12
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.12
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.0
PLN03150	623	hypothetical protein; Provisional	97.93
PLN03150	623	hypothetical protein; Provisional	97.83
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.82
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.78
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.76
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.67
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.63
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.39
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.39
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.38
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.32
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.09
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.07
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.75
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.45
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.43
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.97
PRK04841	903	transcriptional regulator MalT; Provisional	95.89
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.81
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.79
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.22
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.53
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.48
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.54
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.41
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.21
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	92.37
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.28
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	92.19
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.91
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.1
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.54
smart00370	26	LRR Leucine-rich repeats, outliers.	87.54
smart00370	26	LRR Leucine-rich repeats, outliers.	86.4
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.4
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	83.15
COG3903	414	Predicted ATPase [General function prediction only	82.67

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-58  Score=537.89  Aligned_cols=530  Identities=27%  Similarity=0.430  Sum_probs=380.0

Q ss_pred             CCcEEEEEeCChHHhhccCCCCccEEcCCCChHHHHHHHHHHhCCC--CCChhhHHHHHHHHHHcCCCcchHHHHHHHHh
Q 048809            2 GGCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDC--IENGELKSVATEIVKECAGLPIAILPVAKALK   79 (878)
Q Consensus         2 ~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~   79 (878)
                      +||||++|||++.||..+|++..+++++.|+++|||+||+++||..  ...+.++++|++||++|+|+|||++++|+.|+
T Consensus       288 ~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma  367 (889)
T KOG4658|consen  288 NGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLA  367 (889)
T ss_pred             CCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhc
Confidence            6899999999999999879999999999999999999999999643  33345899999999999999999999999999


Q ss_pred             cCCChHHHHHHHHHHHccC------cchhhhhhhhhcccccCCCCCChHHHHHHHhhhcccC-CccH--HHHHHHHhhcc
Q 048809           80 NKSSLYVWKDALRQLKNKS------LLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSY-IRNV--KDLLYHGMGLG  150 (878)
Q Consensus        80 ~~~~~~~w~~~l~~l~~~~------~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp-~~~~--~~li~~w~~~g  150 (878)
                      .|.+.++|+++.+.+.+..      ..+.|+++|++|||.||+      ++|.||+|||+|| ||.|  ++||.+|||||
T Consensus       368 ~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~------~lK~CFLycalFPED~~I~~e~Li~yWiaEG  441 (889)
T KOG4658|consen  368 CKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE------ELKSCFLYCALFPEDYEIKKEKLIEYWIAEG  441 (889)
T ss_pred             CCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH------HHHHHHHhhccCCcccccchHHHHHHHHhcc
Confidence            9999999999999887651      234889999999999999      9999999999999 9999  99999999999


Q ss_pred             CccCCCcHHHHHHHHHHHHHHHHhcccccccc---CCcceehhHHHHHHHHHHHc-----ccceEEEEccCCccCCCCCC
Q 048809          151 LFQNINTVDEARDRAHTLVDKLKNSCLLLGGW---RSEWFSMHDVVRDVAISIAS-----RDQHVFAVENEVVPLTSWPD  222 (878)
Q Consensus       151 ~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~---~~~~~~mhdli~~~~~~~~~-----~e~~~~~~~~~~~~~~~~~~  222 (878)
                      |+++....+.+.+.+++|+.+|+++|+++...   ...+|+|||+||++|.++++     .++.+.  .++ ......+.
T Consensus       442 fi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv--~~~-~~~~~~~~  518 (889)
T KOG4658|consen  442 FIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIV--SDG-VGLSEIPQ  518 (889)
T ss_pred             CcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEE--ECC-cCcccccc
Confidence            99886666677778889999999999998874   45789999999999999998     566333  321 12233444


Q ss_pred             ccccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCC--CCCCCchhhcCCCCCcEEEeeCC-CCCCCCccccCCCCCc
Q 048809          223 KDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDH--SLKIPDNFFTGMTELRVLDFTRM-HLLALPSSLGLLQNLQ  299 (878)
Q Consensus       223 ~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~--~~~l~~~~~~~l~~Lr~L~Ls~~-~i~~lp~~i~~L~~L~  299 (878)
                      ...+..+|++++.++.+..++....+++|++|.+.+|.  +..++.++|..+++||||||++| .+.++|.+|++|.|||
T Consensus       519 ~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             ccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            55577899999999999999999999999999999995  88999999999999999999987 5689999999999999


Q ss_pred             EEEccCCCCCCc-ccccCcccCcEEEeeCC-CcccchHhhcccccCcccccccccCCcEEEccCCCCCcccccccccccc
Q 048809          300 TLSLDYCELGDM-AIIGDLKKLVILALRGS-DMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERR  377 (878)
Q Consensus       300 ~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  377 (878)
                      ||+++++.++.+ .++++|++|.+||+..+ .+..+|..+..|.+||+|           .+.....          ..+
T Consensus       599 yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L-----------~l~~s~~----------~~~  657 (889)
T KOG4658|consen  599 YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL-----------RLPRSAL----------SND  657 (889)
T ss_pred             cccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEE-----------Eeecccc----------ccc
Confidence            999999999876 89999999999999988 455555556667776666           3322211          111


Q ss_pred             ccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhc
Q 048809          378 NASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQL  457 (878)
Q Consensus       378 ~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l  457 (878)
                      .....++.++.+|+.+.+..... .+-..+..+.+|.                                           
T Consensus       658 ~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~-------------------------------------------  693 (889)
T KOG4658|consen  658 KLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLR-------------------------------------------  693 (889)
T ss_pred             hhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHH-------------------------------------------
Confidence            23456666666777666543322 1111110111111                                           


Q ss_pred             cccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccC-cccccceeeccccccccceecCCC
Q 048809          458 KGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTT-AFPVLESLLLRHLSNLEKICRGPL  536 (878)
Q Consensus       458 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~L~~~~~~~~  536 (878)
                      ...+.+.+.++.. ......+  ..+.+|+.|.+.+|.............  ... .|+++..+.+.+|..+....+   
T Consensus       694 ~~~~~l~~~~~~~-~~~~~~~--~~l~~L~~L~i~~~~~~e~~~~~~~~~--~~~~~f~~l~~~~~~~~~~~r~l~~---  765 (889)
T KOG4658|consen  694 SLLQSLSIEGCSK-RTLISSL--GSLGNLEELSILDCGISEIVIEWEESL--IVLLCFPNLSKVSILNCHMLRDLTW---  765 (889)
T ss_pred             HHhHhhhhccccc-ceeeccc--ccccCcceEEEEcCCCchhhccccccc--chhhhHHHHHHHHhhccccccccch---
Confidence            1111222211111 1111222  457888888888887543211100000  112 266777777777765554321   


Q ss_pred             CccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCcccccccccee-ecccCC
Q 048809          537 AAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTL-ELCSLP  615 (878)
Q Consensus       537 ~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~L~~c~  615 (878)
                       ....|+|+.|.+..|+.+..+.+.  .+.+..++++.+                          .+.++..+ .+.+.+
T Consensus       766 -~~f~~~L~~l~l~~~~~~e~~i~~--~k~~~~l~~~i~--------------------------~f~~~~~l~~~~~l~  816 (889)
T KOG4658|consen  766 -LLFAPHLTSLSLVSCRLLEDIIPK--LKALLELKELIL--------------------------PFNKLEGLRMLCSLG  816 (889)
T ss_pred             -hhccCcccEEEEecccccccCCCH--HHHhhhcccEEe--------------------------cccccccceeeecCC
Confidence             234577777777777777666542  233333333111                          13344444 344444


Q ss_pred             CcceecCCCcccccCCcceEEEecCCCcc
Q 048809          616 QLTSFCTGDLHFEFPSLEKLKILECPQVK  644 (878)
Q Consensus       616 ~l~~~~~~~~~~~~~~L~~L~l~~C~~l~  644 (878)
                      .+..+...  ...++.|+.+.+..||++.
T Consensus       817 ~l~~i~~~--~l~~~~l~~~~ve~~p~l~  843 (889)
T KOG4658|consen  817 GLPQLYWL--PLSFLKLEELIVEECPKLG  843 (889)
T ss_pred             CCceeEec--ccCccchhheehhcCcccc
Confidence            44443321  2235558888888888776

>PLN03210 Resistant to P

Probab=100.00  E-value=1e-52  Score=517.69  Aligned_cols=563  Identities=19%  Similarity=0.254  Sum_probs=392.3

Q ss_pred             CCCcEEEEEeCChHHhhccCCCCccEEcCCCChHHHHHHHHHHhC-CCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHh
Q 048809            1 MGGCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTG-DCIENGELKSVATEIVKECAGLPIAILPVAKALK   79 (878)
Q Consensus         1 ~~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~-~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~   79 (878)
                      ++|||||||||+++|+.. ++++++|+++.|+++|||+||+++|+ ...+++++++++++||++|+|+||||+++|+.|+
T Consensus       322 ~~GsrIIiTTrd~~vl~~-~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~  400 (1153)
T PLN03210        322 GSGSRIIVITKDKHFLRA-HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLR  400 (1153)
T ss_pred             CCCcEEEEEeCcHHHHHh-cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHc
Confidence            479999999999999985 77889999999999999999999995 4455677999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHHHHccCcchhhhhhhhhcccccCCCCCChHHHHHHHhhhcccC-CccHHHHHHHHhhccCccCCCcH
Q 048809           80 NKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSY-IRNVKDLLYHGMGLGLFQNINTV  158 (878)
Q Consensus        80 ~~~~~~~w~~~l~~l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp-~~~~~~li~~w~~~g~i~~~~~~  158 (878)
                      ++ +..+|+++++++.... +++|+++|++||++|++     +..|.||+|+|+|| +..++ .+..|.|.+.+...   
T Consensus       401 ~k-~~~~W~~~l~~L~~~~-~~~I~~~L~~SYd~L~~-----~~~k~~Fl~ia~ff~~~~~~-~v~~~l~~~~~~~~---  469 (1153)
T PLN03210        401 GR-DKEDWMDMLPRLRNGL-DGKIEKTLRVSYDGLNN-----KKDKAIFRHIACLFNGEKVN-DIKLLLANSDLDVN---  469 (1153)
T ss_pred             CC-CHHHHHHHHHHHHhCc-cHHHHHHHHHhhhccCc-----cchhhhhheehhhcCCCCHH-HHHHHHHhcCCCch---
Confidence            98 7899999999998754 34899999999999987     25899999999999 77774 45667776544211   


Q ss_pred             HHHHHHHHHHHHHHHhccccccccCCcceehhHHHHHHHHHHHcccceEEEEccCCccCCCCCCcc---------ccCCC
Q 048809          159 DEARDRAHTLVDKLKNSCLLLGGWRSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSWPDKD---------VLKDC  229 (878)
Q Consensus       159 ~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~mhdli~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~---------~~~~l  229 (878)
                              ..++.|+++||++..  .+.++|||++|+||+++++++..     +++.+..-|...+         ...++
T Consensus       470 --------~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~-----~~~~r~~l~~~~di~~vl~~~~g~~~v  534 (1153)
T PLN03210        470 --------IGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSN-----EPGEREFLVDAKDICDVLEDNTGTKKV  534 (1153)
T ss_pred             --------hChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcC-----CCCcceeEeCHHHHHHHHHhCccccee
Confidence                    147889999999775  35699999999999999876531     1111211222111         12344


Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCC-------CCCCccccCCC-CCcEE
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHL-------LALPSSLGLLQ-NLQTL  301 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i-------~~lp~~i~~L~-~L~~L  301 (878)
                      +.+++....+.+                    ..+....|..+++|++|.+..+..       ..+|..+..++ +||+|
T Consensus       535 ~~i~l~~~~~~~--------------------~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L  594 (1153)
T PLN03210        535 LGITLDIDEIDE--------------------LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLL  594 (1153)
T ss_pred             eEEEeccCccce--------------------eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEE
Confidence            555544332221                    123445678889999998876542       13666666654 47777


Q ss_pred             EccCCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCc
Q 048809          302 SLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASL  381 (878)
Q Consensus       302 ~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  381 (878)
                      ++.++.++.++.-....+|++|++.++.+..+|.++.                                           
T Consensus       595 ~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~-------------------------------------------  631 (1153)
T PLN03210        595 RWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVH-------------------------------------------  631 (1153)
T ss_pred             EecCCCCCCCCCcCCccCCcEEECcCccccccccccc-------------------------------------------
Confidence            7777776655332345666666666665555444322                                           


Q ss_pred             ccccCCCCCCEEEeecCC-CCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhcccc
Q 048809          382 HELNNLSKLTSLEILIQD-EKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGI  460 (878)
Q Consensus       382 ~~L~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L  460 (878)
                          .+++|+.|+++++. ...+|                                                        
T Consensus       632 ----~l~~Lk~L~Ls~~~~l~~ip--------------------------------------------------------  651 (1153)
T PLN03210        632 ----SLTGLRNIDLRGSKNLKEIP--------------------------------------------------------  651 (1153)
T ss_pred             ----cCCCCCEEECCCCCCcCcCC--------------------------------------------------------
Confidence                23334444443321 11111                                                        


Q ss_pred             ceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccc
Q 048809          461 KDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAES  540 (878)
Q Consensus       461 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~  540 (878)
                                      .+  ..+++|++|++.+|..+.                               .++   ..++.
T Consensus       652 ----------------~l--s~l~~Le~L~L~~c~~L~-------------------------------~lp---~si~~  679 (1153)
T PLN03210        652 ----------------DL--SMATNLETLKLSDCSSLV-------------------------------ELP---SSIQY  679 (1153)
T ss_pred             ----------------cc--ccCCcccEEEecCCCCcc-------------------------------ccc---hhhhc
Confidence                            11  124566666666654332                               221   12456


Q ss_pred             cCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCccee
Q 048809          541 FCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSF  620 (878)
Q Consensus       541 l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~  620 (878)
                      +++|+.|++.+|+.+..+|..   .++++|+.|++++|..+..++..               .++|+.|+++++. ++.+
T Consensus       680 L~~L~~L~L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~~L~~~p~~---------------~~nL~~L~L~~n~-i~~l  740 (1153)
T PLN03210        680 LNKLEDLDMSRCENLEILPTG---INLKSLYRLNLSGCSRLKSFPDI---------------STNISWLDLDETA-IEEF  740 (1153)
T ss_pred             cCCCCEEeCCCCCCcCccCCc---CCCCCCCEEeCCCCCCccccccc---------------cCCcCeeecCCCc-cccc
Confidence            788999999999999888763   26889999999999877666521               4678888888753 6666


Q ss_pred             cCCCcccccCCcceEEEecCCCccc-------cccccccccccccceeEEEEecccccccceeeeccccccceeeccCCC
Q 048809          621 CTGDLHFEFPSLEKLKILECPQVKF-------KSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFH  693 (878)
Q Consensus       621 ~~~~~~~~~~~L~~L~l~~C~~l~l-------p~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~  693 (878)
                      |..   ..+++|++|.+.+|....+       +......    .++|+.|++++|+.                   +...
T Consensus       741 P~~---~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~----~~sL~~L~Ls~n~~-------------------l~~l  794 (1153)
T PLN03210        741 PSN---LRLENLDELILCEMKSEKLWERVQPLTPLMTML----SPSLTRLFLSDIPS-------------------LVEL  794 (1153)
T ss_pred             ccc---ccccccccccccccchhhccccccccchhhhhc----cccchheeCCCCCC-------------------cccc
Confidence            652   2577888888877653221       1111111    45777777777765                   2222


Q ss_pred             CchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEcccccccc
Q 048809          694 PDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITE  773 (878)
Q Consensus       694 ~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~  773 (878)
                      |       ..++++++|+.|++++|..+..+|... .+++|+.|++++|.+++.++.     ..++|+.|++++ +.++.
T Consensus       795 P-------~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~-n~i~~  860 (1153)
T PLN03210        795 P-------SSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSR-TGIEE  860 (1153)
T ss_pred             C-------hhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----cccccCEeECCC-CCCcc
Confidence            2       245677888899998888888887665 788888999988888877632     235788888887 45776


Q ss_pred             ccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccC
Q 048809          774 IVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSG  839 (878)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~  839 (878)
                      +|..            ...+++|+.|++.+|++|+.+|..   ...+++|+.+++++|++|+.++-
T Consensus       861 iP~s------------i~~l~~L~~L~L~~C~~L~~l~~~---~~~L~~L~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        861 VPWW------------IEKFSNLSFLDMNGCNNLQRVSLN---ISKLKHLETVDFSDCGALTEASW  911 (1153)
T ss_pred             ChHH------------HhcCCCCCEEECCCCCCcCccCcc---cccccCCCeeecCCCcccccccC
Confidence            6643            335889999999999999998877   67788999999999999887653

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.6e-33  Score=348.97  Aligned_cols=501  Identities=17%  Similarity=0.176  Sum_probs=311.9

Q ss_pred             CCCcEEEeeCCCCCCC-CCCC-CCCCccEEEeecCCCC-CCCchhhcCCCCCcEEEeeCCCCC-CCCccccCCCCCcEEE
Q 048809          227 KDCTAISLNNSNINEL-PQGF-ECPQLKYFRIHNDHSL-KIPDNFFTGMTELRVLDFTRMHLL-ALPSSLGLLQNLQTLS  302 (878)
Q Consensus       227 ~~lr~l~l~~~~~~~l-~~~~-~~~~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~  302 (878)
                      .+++.|+++++.+... +..+ .+++|++|++++|.+. .+|.++|..+++||+|+|++|.+. .+|.  +.+++|++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            4688899998887653 3333 7899999999999664 788888889999999999999886 4554  5688999999


Q ss_pred             ccCCCCC-Cc-ccccCcccCcEEEeeCCCcc-cchHhhcccccCccc----------ccc---cccCCcEEEccCCCCCc
Q 048809          303 LDYCELG-DM-AIIGDLKKLVILALRGSDMK-ELVGEIGQLTQLRLL----------IAP---ILSRLEELYIGESPIEW  366 (878)
Q Consensus       303 L~~~~l~-~l-~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L----------ip~---~l~~L~~L~l~~~~~~~  366 (878)
                      |++|.+. .+ ..++++++|++|++++|.+. .+|..++++++|++|          +|.   .+.+|+.|++.+|.+. 
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-  225 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS-  225 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC-
Confidence            9999876 33 77899999999999999664 678888888888777          232   4566667777666554 


Q ss_pred             cccccccccccccCcccccCCCCCCEEEeecCCCC-CCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCC
Q 048809          367 GKVEGVDGERRNASLHELNNLSKLTSLEILIQDEK-TLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGA  445 (878)
Q Consensus       367 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~  445 (878)
                                 ...+..++++++|+.|++++|... .+|..+..+++|+.|++..+....                    
T Consensus       226 -----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--------------------  274 (968)
T PLN00113        226 -----------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG--------------------  274 (968)
T ss_pred             -----------CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec--------------------
Confidence                       234555667777777777766543 456666666777776664322110                    


Q ss_pred             ccccchhHHhhccccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeecccc
Q 048809          446 NICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHL  525 (878)
Q Consensus       446 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~  525 (878)
                         ..+.....+++|++|+++++.........+  ..+++|++|++.++.-...++.       ....+++|+.|++.++
T Consensus       275 ---~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~-------~~~~l~~L~~L~L~~n  342 (968)
T PLN00113        275 ---PIPPSIFSLQKLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKIPV-------ALTSLPRLQVLQLWSN  342 (968)
T ss_pred             ---cCchhHhhccCcCEEECcCCeeccCCChhH--cCCCCCcEEECCCCccCCcCCh-------hHhcCCCCCEEECcCC
Confidence               000112235677777776654332222222  3466777777766542222211       3445677777777765


Q ss_pred             ccccceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccc
Q 048809          526 SNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQ  605 (878)
Q Consensus       526 ~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~  605 (878)
                      .-...+   +..++.+++|+.|++.++. +....+. .+..+++|+.|+++++.....++....            .+++
T Consensus       343 ~l~~~~---p~~l~~~~~L~~L~Ls~n~-l~~~~p~-~~~~~~~L~~L~l~~n~l~~~~p~~~~------------~~~~  405 (968)
T PLN00113        343 KFSGEI---PKNLGKHNNLTVLDLSTNN-LTGEIPE-GLCSSGNLFKLILFSNSLEGEIPKSLG------------ACRS  405 (968)
T ss_pred             CCcCcC---ChHHhCCCCCcEEECCCCe-eEeeCCh-hHhCcCCCCEEECcCCEecccCCHHHh------------CCCC
Confidence            422222   2224456677777777653 3322221 345566777777776654444443222            2677


Q ss_pred             cceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeecccccc
Q 048809          606 LTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVN  684 (878)
Q Consensus       606 L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~  684 (878)
                      |+.|++++|.-...++.  ....+++|+.|++++|.... +|.... .    +++|+.|++++|..              
T Consensus       406 L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~----l~~L~~L~L~~n~~--------------  464 (968)
T PLN00113        406 LRRVRLQDNSFSGELPS--EFTKLPLVYFLDISNNNLQGRINSRKW-D----MPSLQMLSLARNKF--------------  464 (968)
T ss_pred             CCEEECcCCEeeeECCh--hHhcCCCCCEEECcCCcccCccChhhc-c----CCCCcEEECcCcee--------------
Confidence            77777777654333333  24456777777777744322 443332 2    67777777777764              


Q ss_pred             ceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEE
Q 048809          685 AMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMK  764 (878)
Q Consensus       685 l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~  764 (878)
                           ....+.       . ...++|+.|++++|......|..+..+++|+.|++++| .+....+ ..+.++++|+.|+
T Consensus       465 -----~~~~p~-------~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p-~~~~~l~~L~~L~  529 (968)
T PLN00113        465 -----FGGLPD-------S-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN-KLSGEIP-DELSSCKKLVSLD  529 (968)
T ss_pred             -----eeecCc-------c-cccccceEEECcCCccCCccChhhhhhhccCEEECcCC-cceeeCC-hHHcCccCCCEEE
Confidence                 111111       1 12366777787777766666666677777888887774 4444433 3345677788888


Q ss_pred             EccccccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccCCC
Q 048809          765 IFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGE  841 (878)
Q Consensus       765 i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~~  841 (878)
                      |++|.-...+|..            ...+++|+.|++++|.-...+|..   +..+++|+.|++++|+-...+|..+
T Consensus       530 Ls~N~l~~~~p~~------------~~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~l~ls~N~l~~~~p~~~  591 (968)
T PLN00113        530 LSHNQLSGQIPAS------------FSEMPVLSQLDLSQNQLSGEIPKN---LGNVESLVQVNISHNHLHGSLPSTG  591 (968)
T ss_pred             CCCCcccccCChh------------HhCcccCCEEECCCCcccccCChh---HhcCcccCEEeccCCcceeeCCCcc
Confidence            8776533333321            223677788888777655567665   5667778888888877766777543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.7e-33  Score=343.38  Aligned_cols=496  Identities=15%  Similarity=0.111  Sum_probs=308.3

Q ss_pred             CCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCC-CCCcccc-CCCCCcEEEccCCCCCCcccccCcccCcEEEee
Q 048809          249 PQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLL-ALPSSLG-LLQNLQTLSLDYCELGDMAIIGDLKKLVILALR  326 (878)
Q Consensus       249 ~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~-~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~  326 (878)
                      .+++.|+++++.+.......|..+++|++|+|++|.+. .+|..+. .+++||+|+|++|.++.....+.+.+|++|+++
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls  148 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS  148 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECc
Confidence            47999999999766555556799999999999999996 7898765 999999999999998754334679999999999


Q ss_pred             CCCcc-cchHhhcccccCccc----------ccc---cccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCE
Q 048809          327 GSDMK-ELVGEIGQLTQLRLL----------IAP---ILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTS  392 (878)
Q Consensus       327 ~~~l~-~lp~~i~~L~~L~~L----------ip~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~  392 (878)
                      +|.+. .+|..++++++|++|          +|.   ++++|+.|++.+|.+.            ...+..++++++|+.
T Consensus       149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~------------~~~p~~l~~l~~L~~  216 (968)
T PLN00113        149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV------------GQIPRELGQMKSLKW  216 (968)
T ss_pred             CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc------------CcCChHHcCcCCccE
Confidence            99776 688889988887777          222   4555666666655443            223455566666666


Q ss_pred             EEeecCCCC-CCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCcCCc
Q 048809          393 LEILIQDEK-TLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDM  471 (878)
Q Consensus       393 L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~  471 (878)
                      |++++|... .+|..+..+++|+.|++..+....                       ..+.....+++|+.|++.++...
T Consensus       217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------------~~p~~l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG-----------------------PIPSSLGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             EECcCCccCCcCChhHhcCCCCCEEECcCceecc-----------------------ccChhHhCCCCCCEEECcCCeee
Confidence            666655533 455555556666666554222100                       00001123455666666554432


Q ss_pred             ccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeec
Q 048809          472 KSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEW  551 (878)
Q Consensus       472 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~  551 (878)
                      ......+  ..+++|++|+++++.-...++.       ....+++|+.|++.++.-....   +..+..+++|+.|++.+
T Consensus       274 ~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~-------~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~L~~  341 (968)
T PLN00113        274 GPIPPSI--FSLQKLISLDLSDNSLSGEIPE-------LVIQLQNLEILHLFSNNFTGKI---PVALTSLPRLQVLQLWS  341 (968)
T ss_pred             ccCchhH--hhccCcCEEECcCCeeccCCCh-------hHcCCCCCcEEECCCCccCCcC---ChhHhcCCCCCEEECcC
Confidence            2222222  2355666666655431111110       2334555666666553221111   11234455666666665


Q ss_pred             CCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecCCCcccccCC
Q 048809          552 CDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPS  631 (878)
Q Consensus       552 c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~  631 (878)
                      |.-...+|.  .+..+++|+.|++++|.....++.....            +++|+.|++++++....++.  ....+++
T Consensus       342 n~l~~~~p~--~l~~~~~L~~L~Ls~n~l~~~~p~~~~~------------~~~L~~L~l~~n~l~~~~p~--~~~~~~~  405 (968)
T PLN00113        342 NKFSGEIPK--NLGKHNNLTVLDLSTNNLTGEIPEGLCS------------SGNLFKLILFSNSLEGEIPK--SLGACRS  405 (968)
T ss_pred             CCCcCcCCh--HHhCCCCCcEEECCCCeeEeeCChhHhC------------cCCCCEEECcCCEecccCCH--HHhCCCC
Confidence            432222222  3345556666666655433333322221            45566666655443333332  2334556


Q ss_pred             cceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeeccccccceeeccCCCCchhhhccccccccCCc
Q 048809          632 LEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNL  710 (878)
Q Consensus       632 L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L  710 (878)
                      |+.|++++|..-. +|..+ ..    +++|+.|++++|..                          ....+..+..+++|
T Consensus       406 L~~L~L~~n~l~~~~p~~~-~~----l~~L~~L~Ls~N~l--------------------------~~~~~~~~~~l~~L  454 (968)
T PLN00113        406 LRRVRLQDNSFSGELPSEF-TK----LPLVYFLDISNNNL--------------------------QGRINSRKWDMPSL  454 (968)
T ss_pred             CCEEECcCCEeeeECChhH-hc----CCCCCEEECcCCcc--------------------------cCccChhhccCCCC
Confidence            6666666543222 44332 22    56666666665543                          22223334567899


Q ss_pred             cEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccccccccccccccccccccccccc
Q 048809          711 EVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYE  790 (878)
Q Consensus       711 ~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~  790 (878)
                      +.|++++|.....+|... ..++|+.|++++| ++....+ ..+.++++|+.|++++|.-...+|..            .
T Consensus       455 ~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~------------~  519 (968)
T PLN00113        455 QMLSLARNKFFGGLPDSF-GSKRLENLDLSRN-QFSGAVP-RKLGSLSELMQLKLSENKLSGEIPDE------------L  519 (968)
T ss_pred             cEEECcCceeeeecCccc-ccccceEEECcCC-ccCCccC-hhhhhhhccCEEECcCCcceeeCChH------------H
Confidence            999999998777666544 5689999999986 4554433 44578999999999997654455542            2


Q ss_pred             cccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccCCCccCCCcceeeccccC
Q 048809          791 IVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQWD  856 (878)
Q Consensus       791 ~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~~~~L~~l~i~~c~  856 (878)
                      ..+++|+.|+|++|.-...+|..   ...+++|+.|++++|.....+|.....+++|+.+++++|.
T Consensus       520 ~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~  582 (968)
T PLN00113        520 SSCKKLVSLDLSHNQLSGQIPAS---FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH  582 (968)
T ss_pred             cCccCCCEEECCCCcccccCChh---HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence            34899999999998765567766   6789999999999998888999988889999999999863

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.88  E-value=1.3e-23  Score=222.38  Aligned_cols=147  Identities=34%  Similarity=0.517  Sum_probs=120.3

Q ss_pred             CCcEEEEEeCChHHhhccCCC-CccEEcCCCChHHHHHHHHHHhCCC--CCChhhHHHHHHHHHHcCCCcchHHHHHHHH
Q 048809            2 GGCKVLLTARSHDVLSSKMDC-QKNIFVDVLNAKEAWSLFEKMTGDC--IENGELKSVATEIVKECAGLPIAILPVAKAL   78 (878)
Q Consensus         2 ~gs~iivTtR~~~v~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l   78 (878)
                      .|||||||||+..|+.. ++. ...|++++|+++||++||++.++..  ...+..++.+++|+++|+|+||||+++|++|
T Consensus       128 ~~~kilvTTR~~~v~~~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l  206 (287)
T PF00931_consen  128 SGSKILVTTRDRSVAGS-LGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYL  206 (287)
T ss_dssp             SS-EEEEEESCGGGGTT-HHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred             ccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            58999999999999985 433 6789999999999999999999632  3456678899999999999999999999999


Q ss_pred             hcCCChHHHHHHHHHHHccCc-----chhhhhhhhhcccccCCCCCChHHHHHHHhhhcccC-CccH--HHHHHHHhhcc
Q 048809           79 KNKSSLYVWKDALRQLKNKSL-----LGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSY-IRNV--KDLLYHGMGLG  150 (878)
Q Consensus        79 ~~~~~~~~w~~~l~~l~~~~~-----~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp-~~~~--~~li~~w~~~g  150 (878)
                      +.+.+..+|+++++++.....     ...++.++.+||+.||+      ++|+||+|||+|| ++.|  +.++++|+++|
T Consensus       207 ~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~------~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~  280 (287)
T PF00931_consen  207 RSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD------ELRRCFLYLSIFPEGVPIPRERLIRLWVAEG  280 (287)
T ss_dssp             HHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT------CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-H
T ss_pred             cccccccccccccccccccccccccccccccccceechhcCCc------cHHHHHhhCcCCCCCceECHHHHHHHHHHCC
Confidence            776577889999998766432     34899999999999999      9999999999999 8777  99999999999


Q ss_pred             CccCC
Q 048809          151 LFQNI  155 (878)
Q Consensus       151 ~i~~~  155 (878)
                      ||+..
T Consensus       281 ~i~~~  285 (287)
T PF00931_consen  281 FISSK  285 (287)
T ss_dssp             HTC--
T ss_pred             CCccc
Confidence            99653

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.87  E-value=2.4e-24  Score=237.03  Aligned_cols=263  Identities=17%  Similarity=0.213  Sum_probs=182.8

Q ss_pred             ccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccc
Q 048809          514 FPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDES  593 (878)
Q Consensus       514 ~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  593 (878)
                      -|+|+.|...+++-.+ ..    ....-.+|+.++++. .+++.+|  .|+..+.+|+.+.+... .+..++.....   
T Consensus       218 g~~l~~L~a~~n~l~~-~~----~~p~p~nl~~~dis~-n~l~~lp--~wi~~~~nle~l~~n~N-~l~~lp~ri~~---  285 (1081)
T KOG0618|consen  218 GPSLTALYADHNPLTT-LD----VHPVPLNLQYLDISH-NNLSNLP--EWIGACANLEALNANHN-RLVALPLRISR---  285 (1081)
T ss_pred             CcchheeeeccCccee-ec----cccccccceeeecch-hhhhcch--HHHHhcccceEecccch-hHHhhHHHHhh---
Confidence            3555666666554321 11    111234678888877 5788887  47888999999988874 45666654443   


Q ss_pred             cCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-cccccccccccccc-ceeEEEEeccccc
Q 048809          594 SNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFH-TIKVLCIEGYDYD  671 (878)
Q Consensus       594 ~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~-~L~~L~l~~c~~~  671 (878)
                               ..+|+.|.+..| .++.++.  ....+.+|++|++.. +++. +|..++.-    .. +|+.|+.+.++. 
T Consensus       286 ---------~~~L~~l~~~~n-el~yip~--~le~~~sL~tLdL~~-N~L~~lp~~~l~v----~~~~l~~ln~s~n~l-  347 (1081)
T KOG0618|consen  286 ---------ITSLVSLSAAYN-ELEYIPP--FLEGLKSLRTLDLQS-NNLPSLPDNFLAV----LNASLNTLNVSSNKL-  347 (1081)
T ss_pred             ---------hhhHHHHHhhhh-hhhhCCC--cccccceeeeeeehh-ccccccchHHHhh----hhHHHHHHhhhhccc-
Confidence                     788888888775 4666665  344688999999988 6666 88766543    32 366666666652 


Q ss_pred             ccceeeeccccccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeech
Q 048809          672 GEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTS  751 (878)
Q Consensus       672 ~~~~~~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~  751 (878)
                                         ...+..      +-...+.|+.|++.++.--.+..+-+.++..||.|++++ +.|..+ |.
T Consensus       348 -------------------~~lp~~------~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~f-pa  400 (1081)
T KOG0618|consen  348 -------------------STLPSY------EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSF-PA  400 (1081)
T ss_pred             -------------------cccccc------cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccC-CH
Confidence                               222211      112357889999998876667777788999999999998 788877 55


Q ss_pred             hhhhhhccceEEEEccccccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCC
Q 048809          752 STAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDC  831 (878)
Q Consensus       752 ~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C  831 (878)
                      ..+.++..|++|++|+ ++|+.+|.            ....+..|+.|...+ +.|..+| .   +..++.|+.+|+ +|
T Consensus       401 s~~~kle~LeeL~LSG-NkL~~Lp~------------tva~~~~L~tL~ahs-N~l~~fP-e---~~~l~qL~~lDl-S~  461 (1081)
T KOG0618|consen  401 SKLRKLEELEELNLSG-NKLTTLPD------------TVANLGRLHTLRAHS-NQLLSFP-E---LAQLPQLKVLDL-SC  461 (1081)
T ss_pred             HHHhchHHhHHHhccc-chhhhhhH------------HHHhhhhhHHHhhcC-Cceeech-h---hhhcCcceEEec-cc
Confidence            6678899999999999 77998885            334578888887654 5677888 4   567888888888 56


Q ss_pred             CCccc--ccCCCccC-CCcceeeccc
Q 048809          832 PNMSI--FSGGELST-PNLRKVQLKQ  854 (878)
Q Consensus       832 ~~L~~--lp~~~~~~-~~L~~l~i~~  854 (878)
                      .+|+.  +|+..  + |+||+|++.+
T Consensus       462 N~L~~~~l~~~~--p~p~LkyLdlSG  485 (1081)
T KOG0618|consen  462 NNLSEVTLPEAL--PSPNLKYLDLSG  485 (1081)
T ss_pred             chhhhhhhhhhC--CCcccceeeccC
Confidence            67775  34432  4 8888888874

>PLN03210 Resistant to P

Probab=99.87  E-value=1.1e-20  Score=234.09  Aligned_cols=176  Identities=19%  Similarity=0.250  Sum_probs=128.6

Q ss_pred             ccCCCcEEEeeCCCCC-------CCCCCC-CC-CCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCC
Q 048809          225 VLKDCTAISLNNSNIN-------ELPQGF-EC-PQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLL  295 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~-------~l~~~~-~~-~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L  295 (878)
                      .+.+++.|.+..+...       .+|..+ .+ ++||.|.+.++.+..+|..+  .+.+|+.|+++++.+..+|.++..+
T Consensus       556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l  633 (1153)
T PLN03210        556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSL  633 (1153)
T ss_pred             cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccccccC
Confidence            4667888887655321       244444 23 47999999999989999874  6789999999999999999999999


Q ss_pred             CCCcEEEccCCC-CCCcccccCcccCcEEEeeCC-CcccchHhhcccccCccc----------ccc--cccCCcEEEccC
Q 048809          296 QNLQTLSLDYCE-LGDMAIIGDLKKLVILALRGS-DMKELVGEIGQLTQLRLL----------IAP--ILSRLEELYIGE  361 (878)
Q Consensus       296 ~~L~~L~L~~~~-l~~l~~i~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L----------ip~--~l~~L~~L~l~~  361 (878)
                      ++|++|+|++|. ++.++.++.+++|++|++++| .+..+|..+++|++|++|          +|.  ++++|+.|++.+
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsg  713 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSG  713 (1153)
T ss_pred             CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCC
Confidence            999999999886 777788899999999999998 788899999988888777          333  456677777766


Q ss_pred             CCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEE
Q 048809          362 SPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRI  418 (878)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l  418 (878)
                      |...            ...+.   ...+|+.|+++++.+..+|..+ .+++|+.|.+
T Consensus       714 c~~L------------~~~p~---~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l  754 (1153)
T PLN03210        714 CSRL------------KSFPD---ISTNISWLDLDETAIEEFPSNL-RLENLDELIL  754 (1153)
T ss_pred             CCCc------------ccccc---ccCCcCeeecCCCccccccccc-cccccccccc
Confidence            5322            01111   1346677777777766666654 4556665554

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.86  E-value=1.4e-22  Score=211.67  Aligned_cols=368  Identities=16%  Similarity=0.163  Sum_probs=219.7

Q ss_pred             cCCCcEEEeeCCCCCCCCCCC----CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEE
Q 048809          226 LKDCTAISLNNSNINELPQGF----ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTL  301 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~----~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L  301 (878)
                      .-+.+-++.+.+.+..+.+.-    -.+..++|++++|.+..+.-.+|.++.+|+.+++..|.++.+|...+...||..|
T Consensus        51 ~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L  130 (873)
T KOG4194|consen   51 PCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKL  130 (873)
T ss_pred             CCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEE
Confidence            445677888888777653321    3467889999999999998888999999999999999999999999999999999


Q ss_pred             EccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccc
Q 048809          302 SLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRN  378 (878)
Q Consensus       302 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  378 (878)
                      +|.+|.|+.+  +.+.-+..|+.|||+.|.++.+|.. +.           .-.++++|++.+|.+.            .
T Consensus       131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp-----------~~~ni~~L~La~N~It------------~  187 (873)
T KOG4194|consen  131 DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFP-----------AKVNIKKLNLASNRIT------------T  187 (873)
T ss_pred             eeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCC-----------CCCCceEEeecccccc------------c
Confidence            9999999988  7899999999999999999887753 33           2346788899988876            1


Q ss_pred             cCcccccCCCCCCEEEeecCCCCCCCcchh-cccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhc
Q 048809          379 ASLHELNNLSKLTSLEILIQDEKTLPRDLS-FFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQL  457 (878)
Q Consensus       379 ~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l  457 (878)
                      .....+..+.+|..|.++.|++..+|...+ .+++|+.|++..+........                       .+..+
T Consensus       188 l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l-----------------------tFqgL  244 (873)
T KOG4194|consen  188 LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL-----------------------TFQGL  244 (873)
T ss_pred             cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh-----------------------hhcCc
Confidence            223456677789999999999999987655 488888888753321110000                       01123


Q ss_pred             cccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCC
Q 048809          458 KGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLA  537 (878)
Q Consensus       458 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~  537 (878)
                      ++|+.|.+......+-....+  -.+.++++|++... .+..+..+      ...++.+|+.|++++ +.+..+..  ..
T Consensus       245 ~Sl~nlklqrN~I~kL~DG~F--y~l~kme~l~L~~N-~l~~vn~g------~lfgLt~L~~L~lS~-NaI~rih~--d~  312 (873)
T KOG4194|consen  245 PSLQNLKLQRNDISKLDDGAF--YGLEKMEHLNLETN-RLQAVNEG------WLFGLTSLEQLDLSY-NAIQRIHI--DS  312 (873)
T ss_pred             hhhhhhhhhhcCcccccCcce--eeecccceeecccc-hhhhhhcc------cccccchhhhhccch-hhhheeec--ch
Confidence            344444433221100000011  12445555555432 22222111      222345555555554 22332211  11


Q ss_pred             ccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCc
Q 048809          538 AESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQL  617 (878)
Q Consensus       538 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l  617 (878)
                      ....++|+.|++++ ++++.+++. .+..+..|++|.++.+ .+..+....           +..+.+|++|+|++..--
T Consensus       313 WsftqkL~~LdLs~-N~i~~l~~~-sf~~L~~Le~LnLs~N-si~~l~e~a-----------f~~lssL~~LdLr~N~ls  378 (873)
T KOG4194|consen  313 WSFTQKLKELDLSS-NRITRLDEG-SFRVLSQLEELNLSHN-SIDHLAEGA-----------FVGLSSLHKLDLRSNELS  378 (873)
T ss_pred             hhhcccceeEeccc-cccccCChh-HHHHHHHhhhhccccc-chHHHHhhH-----------HHHhhhhhhhcCcCCeEE
Confidence            23345566666655 455555442 3445556666666653 333332211           122556666666553211


Q ss_pred             ceecC-CCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccc
Q 048809          618 TSFCT-GDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDY  670 (878)
Q Consensus       618 ~~~~~-~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~  670 (878)
                      -.+.. ......+++|+.|.+.+ ++++ +|...+.+    +++|+.|++.+|+.
T Consensus       379 ~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsg----l~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  379 WCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSG----LEALEHLDLGDNAI  428 (873)
T ss_pred             EEEecchhhhccchhhhheeecC-ceeeecchhhhcc----CcccceecCCCCcc
Confidence            11111 01223456666666666 5555 66666655    66666666666654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.86  E-value=1.7e-25  Score=223.45  Aligned_cols=485  Identities=17%  Similarity=0.192  Sum_probs=262.1

Q ss_pred             CCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCC
Q 048809          228 DCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYC  306 (878)
Q Consensus       228 ~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~  306 (878)
                      .+..+.+++|.+..+...+ .+..+.+|.+++|...++|..+ +++..+..|+.++|++..+|+.++.+.+|+.|+.++|
T Consensus        46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n  124 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN  124 (565)
T ss_pred             chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence            3567788888888776665 7888999999999999999886 8899999999999999999999999999999999999


Q ss_pred             CCCCc-ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809          307 ELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN  385 (878)
Q Consensus       307 ~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~  385 (878)
                      .+..+ ++++.+..|..|+..+|.++.+|.+++++.+|-.+           .+.+|.+.             +.+...-
T Consensus       125 ~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l-----------~~~~n~l~-------------~l~~~~i  180 (565)
T KOG0472|consen  125 ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKL-----------DLEGNKLK-------------ALPENHI  180 (565)
T ss_pred             ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHh-----------hccccchh-------------hCCHHHH
Confidence            87765 88999999999999999999999998887766655           22222221             1222333


Q ss_pred             CCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEe
Q 048809          386 NLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCL  465 (878)
Q Consensus       386 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l  465 (878)
                      .++.|++|+...|...++|..++.+.+|+.|++..........                         +...+.|++|++
T Consensus       181 ~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe-------------------------f~gcs~L~Elh~  235 (565)
T KOG0472|consen  181 AMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE-------------------------FPGCSLLKELHV  235 (565)
T ss_pred             HHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC-------------------------CCccHHHHHHHh
Confidence            3445555555555555555555555554444443211110000                         000122223332


Q ss_pred             cCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCcc
Q 048809          466 GGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVK  545 (878)
Q Consensus       466 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~  545 (878)
                      .... ++ +++.-....++++..|++.+. .++..|+       ....+.+|+.|++++ +.+..+   +...+++ .|+
T Consensus       236 g~N~-i~-~lpae~~~~L~~l~vLDLRdN-klke~Pd-------e~clLrsL~rLDlSN-N~is~L---p~sLgnl-hL~  300 (565)
T KOG0472|consen  236 GENQ-IE-MLPAEHLKHLNSLLVLDLRDN-KLKEVPD-------EICLLRSLERLDLSN-NDISSL---PYSLGNL-HLK  300 (565)
T ss_pred             cccH-HH-hhHHHHhcccccceeeecccc-ccccCch-------HHHHhhhhhhhcccC-CccccC---Ccccccc-eee
Confidence            2111 01 111111134677777777664 4555543       444566777777776 344443   3345666 677


Q ss_pred             EEEeecCCCccccc----chhhhhhccCccEEEEecCCcchhhhccccc--ccccCCCCccccccccceeecccCCCcce
Q 048809          546 DIRVEWCDKLKNVF----PLVIGRGLQQLQSIEVTGCQNLEVIFAAERG--DESSNSNTQVIELTQLTTLELCSLPQLTS  619 (878)
Q Consensus       546 ~L~l~~c~~L~~l~----~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~L~~c~~l~~  619 (878)
                      .|.+.+.| ++.+-    ..+...-++.|+.-  ..|..+.........  ...+...+........+.|++++ .+++.
T Consensus       301 ~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~--~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~  376 (565)
T KOG0472|consen  301 FLALEGNP-LRTIRREIISKGTQEVLKYLRSK--IKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTL  376 (565)
T ss_pred             ehhhcCCc-hHHHHHHHHcccHHHHHHHHHHh--hccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-ccccc
Confidence            77776643 22110    00000111122210  011111111000000  00000111122233344444443 23333


Q ss_pred             ecCCCccc-ccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeeccccccceeeccCCCCchh
Q 048809          620 FCTGDLHF-EFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLK  697 (878)
Q Consensus       620 ~~~~~~~~-~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l~  697 (878)
                      +|..-+.. .-.-....+++. +.+. +|.....     +..+.+.-+..+.                          ..
T Consensus       377 VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L~~-----lkelvT~l~lsnn--------------------------~i  424 (565)
T KOG0472|consen  377 VPDEVFEAAKSEIVTSVNFSK-NQLCELPKRLVE-----LKELVTDLVLSNN--------------------------KI  424 (565)
T ss_pred             CCHHHHHHhhhcceEEEeccc-chHhhhhhhhHH-----HHHHHHHHHhhcC--------------------------cc
Confidence            33310000 000112223333 2222 3332211     1111111111111                          11


Q ss_pred             hhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEcccccccccccc
Q 048809          698 QILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVD  777 (878)
Q Consensus       698 ~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~  777 (878)
                      +..+..+..++.|..|+++++ -+.++|..++.+..|+.|+|+. +.++.+  +.+...+..|+.+-.++ +++.+++..
T Consensus       425 sfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~-NrFr~l--P~~~y~lq~lEtllas~-nqi~~vd~~  499 (565)
T KOG0472|consen  425 SFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSF-NRFRML--PECLYELQTLETLLASN-NQIGSVDPS  499 (565)
T ss_pred             ccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccc-cccccc--hHHHhhHHHHHHHHhcc-ccccccChH
Confidence            222333455677888888764 3677888888888888888886 566655  23334444455555544 566666543


Q ss_pred             ccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCC
Q 048809          778 DDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPN  833 (878)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~  833 (878)
                                 ....+..|..|++.+ +.++.+|..   ++++++|++|+++|.|-
T Consensus       500 -----------~l~nm~nL~tLDL~n-Ndlq~IPp~---LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  500 -----------GLKNMRNLTTLDLQN-NDLQQIPPI---LGNMTNLRHLELDGNPF  540 (565)
T ss_pred             -----------HhhhhhhcceeccCC-CchhhCChh---hccccceeEEEecCCcc
Confidence                       234577888888866 568888887   78888888888888763

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.85  E-value=1.4e-23  Score=231.05  Aligned_cols=130  Identities=17%  Similarity=0.266  Sum_probs=83.4

Q ss_pred             ccceeEEEEecccccccceeeeccccccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcE
Q 048809          657 FHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTT  736 (878)
Q Consensus       657 l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~  736 (878)
                      .+.|+.|.+.+|.. ++..|+......+|+++++++. .+.+++...+.++..|+.|+++|+. ++.+|.....++.|++
T Consensus       358 ~~~Lq~LylanN~L-td~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~t  434 (1081)
T KOG0618|consen  358 HAALQELYLANNHL-TDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHT  434 (1081)
T ss_pred             hHHHHHHHHhcCcc-cccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHH
Confidence            33444444444433 4444444333334444433332 1344455566778889999999864 8888888889999999


Q ss_pred             EEecccCCceEeechhhhhhhccceEEEEcccccccccccccccccccccccccccc-ccchhhccccCcc
Q 048809          737 VAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVF-SELKELRLSSLES  806 (878)
Q Consensus       737 L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~  806 (878)
                      |...+ +++..+|  .+ ..+++|+.+|++ |++|+.+.....            .+ |.|++|++++...
T Consensus       435 L~ahs-N~l~~fP--e~-~~l~qL~~lDlS-~N~L~~~~l~~~------------~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  435 LRAHS-NQLLSFP--EL-AQLPQLKVLDLS-CNNLSEVTLPEA------------LPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             HhhcC-Cceeech--hh-hhcCcceEEecc-cchhhhhhhhhh------------CCCcccceeeccCCcc
Confidence            97665 6777763  33 468899999997 677877654321            23 8899999988765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=4.5e-23  Score=216.43  Aligned_cols=320  Identities=19%  Similarity=0.284  Sum_probs=202.4

Q ss_pred             ccCCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecC--CCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEE
Q 048809          225 VLKDCTAISLNNSNINELPQGF-ECPQLKYFRIHND--HSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTL  301 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~--~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L  301 (878)
                      ..+++.||++.+|.+.++...+ .++.||++++..|  ....||.++| +++.|.+||||+|.+.+.|..+..-+++-+|
T Consensus        53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL  131 (1255)
T KOG0444|consen   53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVL  131 (1255)
T ss_pred             HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence            4668899999999988776655 8999999999998  5567999985 8999999999999999999999999999999


Q ss_pred             EccCCCCCCc--ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCcccccccccccccc
Q 048809          302 SLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNA  379 (878)
Q Consensus       302 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  379 (878)
                      +|++|.|+.+  +-+-+|+-|-+|||++|++..+|..+.+|.+|++|           .+++|.+.            .+
T Consensus       132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL-----------~Ls~NPL~------------hf  188 (1255)
T KOG0444|consen  132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL-----------KLSNNPLN------------HF  188 (1255)
T ss_pred             EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh-----------hcCCChhh------------HH
Confidence            9999999876  66889999999999999999999999988887777           44444332            22


Q ss_pred             CcccccCCCCCCEEEeecCC--CCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhc
Q 048809          380 SLHELNNLSKLTSLEILIQD--EKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQL  457 (878)
Q Consensus       380 ~~~~L~~l~~L~~L~l~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l  457 (878)
                      .+..|-.+..|..|.+++.+  ...+|..+..+.+|..++++.+.                                   
T Consensus       189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-----------------------------------  233 (1255)
T KOG0444|consen  189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-----------------------------------  233 (1255)
T ss_pred             HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-----------------------------------
Confidence            23334444455555555443  23444444444444333332100                                   


Q ss_pred             cccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCC
Q 048809          458 KGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLA  537 (878)
Q Consensus       458 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~  537 (878)
                                   +..++..+  -.+++|+.|.+++. .++.+.-       ..+...+|++|+++. +.|+.++   ..
T Consensus       234 -------------Lp~vPecl--y~l~~LrrLNLS~N-~iteL~~-------~~~~W~~lEtLNlSr-NQLt~LP---~a  286 (1255)
T KOG0444|consen  234 -------------LPIVPECL--YKLRNLRRLNLSGN-KITELNM-------TEGEWENLETLNLSR-NQLTVLP---DA  286 (1255)
T ss_pred             -------------CCcchHHH--hhhhhhheeccCcC-ceeeeec-------cHHHHhhhhhhcccc-chhccch---HH
Confidence                         00011111  12344444444442 2222211       223344555555554 3444442   22


Q ss_pred             ccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCc
Q 048809          538 AESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQL  617 (878)
Q Consensus       538 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l  617 (878)
                      ...+++|++|.+.+ ++++.-...+.++.+.+|+++..++ +.++-+|.+...            |++|+.|.++. +.+
T Consensus       287 vcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcR------------C~kL~kL~L~~-NrL  351 (1255)
T KOG0444|consen  287 VCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCR------------CVKLQKLKLDH-NRL  351 (1255)
T ss_pred             HhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhc-cccccCchhhhh------------hHHHHHhcccc-cce
Confidence            34456666666655 3433221112456666777776665 455666655444            77777777765 456


Q ss_pred             ceecCCCcccccCCcceEEEecCCCccccc
Q 048809          618 TSFCTGDLHFEFPSLEKLKILECPQVKFKS  647 (878)
Q Consensus       618 ~~~~~~~~~~~~~~L~~L~l~~C~~l~lp~  647 (878)
                      ..+|.+  +.-++.|+.|++...+++..|+
T Consensus       352 iTLPea--IHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  352 ITLPEA--IHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             eechhh--hhhcCCcceeeccCCcCccCCC
Confidence            666653  4457777777777777777443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.83  E-value=1.4e-23  Score=209.88  Aligned_cols=175  Identities=13%  Similarity=0.080  Sum_probs=93.4

Q ss_pred             ccCCccEEEeecCCCcccccchhhhhhc--cCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCc
Q 048809          540 SFCKVKDIRVEWCDKLKNVFPLVIGRGL--QQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQL  617 (878)
Q Consensus       540 ~l~~L~~L~l~~c~~L~~l~~~~~~~~l--~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l  617 (878)
                      .....+.|.+++ .+++.+|.. ++..-  .-....++++ +.+.++|.....            +..+.+.-+...+.+
T Consensus       360 ~~i~tkiL~~s~-~qlt~VPdE-Vfea~~~~~Vt~Vnfsk-NqL~elPk~L~~------------lkelvT~l~lsnn~i  424 (565)
T KOG0472|consen  360 AIITTKILDVSD-KQLTLVPDE-VFEAAKSEIVTSVNFSK-NQLCELPKRLVE------------LKELVTDLVLSNNKI  424 (565)
T ss_pred             hhhhhhhhcccc-cccccCCHH-HHHHhhhcceEEEeccc-chHhhhhhhhHH------------HHHHHHHHHhhcCcc
Confidence            455677888877 577777764 22221  2256677777 456677654222            333333333332333


Q ss_pred             ceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeeccccccceeeccCCCCch
Q 048809          618 TSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDL  696 (878)
Q Consensus       618 ~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l  696 (878)
                      .-++.  ....+++|..|++++ +-+. +|.+++.     +..|+.|+|+.|.+  ............++.+ +.+-.++
T Consensus       425 sfv~~--~l~~l~kLt~L~L~N-N~Ln~LP~e~~~-----lv~Lq~LnlS~NrF--r~lP~~~y~lq~lEtl-las~nqi  493 (565)
T KOG0472|consen  425 SFVPL--ELSQLQKLTFLDLSN-NLLNDLPEEMGS-----LVRLQTLNLSFNRF--RMLPECLYELQTLETL-LASNNQI  493 (565)
T ss_pred             ccchH--HHHhhhcceeeeccc-chhhhcchhhhh-----hhhhheeccccccc--ccchHHHhhHHHHHHH-Hhccccc
Confidence            33333  456789999999998 5566 9988876     88899999999865  0000000011111111 2222233


Q ss_pred             hhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecc
Q 048809          697 KQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDF  741 (878)
Q Consensus       697 ~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~  741 (878)
                      ..+.+.++.++.+|..|++.++ .+..+|+.++++++|++|++++
T Consensus       494 ~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~g  537 (565)
T KOG0472|consen  494 GSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDG  537 (565)
T ss_pred             cccChHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecC
Confidence            3344444444555555555432 2444555555555555555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.81  E-value=1.2e-20  Score=197.31  Aligned_cols=328  Identities=18%  Similarity=0.226  Sum_probs=228.5

Q ss_pred             cCCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEc
Q 048809          226 LKDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSL  303 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L  303 (878)
                      .++++.+.+..|.++.||... ...+|+.|++.+|.+..+..+.++.+..||+||||.|.|..+| .++..-.++++|+|
T Consensus       101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~L  180 (873)
T KOG4194|consen  101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNL  180 (873)
T ss_pred             CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEee
Confidence            567788888888888888877 5567999999999988888877889999999999999999887 55777789999999


Q ss_pred             cCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCccc------c--c-----ccccCCcEEEccCCCCCcc
Q 048809          304 DYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLL------I--A-----PILSRLEELYIGESPIEWG  367 (878)
Q Consensus       304 ~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L------i--p-----~~l~~L~~L~l~~~~~~~~  367 (878)
                      ++|.|+.+  ..|.+|.+|.+|.|+.|+++.+|.. |.+|.+|+.|      |  -     .++.+|+.|.+..|.+...
T Consensus       181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL  260 (873)
T KOG4194|consen  181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL  260 (873)
T ss_pred             ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence            99999987  7899999999999999999999965 6778888888      1  1     1777888888887766522


Q ss_pred             ccccccccccccCcccccCCCCCCEEEeecCCCCCCC-cchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCc
Q 048809          368 KVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGAN  446 (878)
Q Consensus       368 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~  446 (878)
                      .+            ..+-.+.++++|++..|+..... .|+..+..|+.|+++++..-                     .
T Consensus       261 ~D------------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~---------------------r  307 (873)
T KOG4194|consen  261 DD------------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ---------------------R  307 (873)
T ss_pred             cC------------cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh---------------------e
Confidence            11            23455677888888888766554 56778888888887643321                     1


Q ss_pred             cccchhHHhhccccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccc
Q 048809          447 ICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLS  526 (878)
Q Consensus       447 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  526 (878)
                      ++...|.  ..++|+.|+|+......  +++-....+..|++|.++.. .+..+-.+      ....+.+|++|+++.. 
T Consensus       308 ih~d~Ws--ftqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~N-si~~l~e~------af~~lssL~~LdLr~N-  375 (873)
T KOG4194|consen  308 IHIDSWS--FTQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHN-SIDHLAEG------AFVGLSSLHKLDLRSN-  375 (873)
T ss_pred             eecchhh--hcccceeEecccccccc--CChhHHHHHHHhhhhccccc-chHHHHhh------HHHHhhhhhhhcCcCC-
Confidence            2222222  24788888887554321  11111124667788888764 23333211      4456788888888763 


Q ss_pred             ccc-ceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccc
Q 048809          527 NLE-KICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQ  605 (878)
Q Consensus       527 ~L~-~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~  605 (878)
                      .+. .+......+..+++|++|.+.+ ++++.++.. .+.++++||.|++.++.....-+..+..            + .
T Consensus       376 ~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~kr-Afsgl~~LE~LdL~~NaiaSIq~nAFe~------------m-~  440 (873)
T KOG4194|consen  376 ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKR-AFSGLEALEHLDLGDNAIASIQPNAFEP------------M-E  440 (873)
T ss_pred             eEEEEEecchhhhccchhhhheeecC-ceeeecchh-hhccCcccceecCCCCcceeeccccccc------------c-h
Confidence            222 1112223345688999999988 688888664 6688899999999886543333332222            3 6


Q ss_pred             cceeeccc
Q 048809          606 LTTLELCS  613 (878)
Q Consensus       606 L~~L~L~~  613 (878)
                      |++|.+..
T Consensus       441 Lk~Lv~nS  448 (873)
T KOG4194|consen  441 LKELVMNS  448 (873)
T ss_pred             hhhhhhcc
Confidence            77776654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.79  E-value=3.6e-21  Score=202.29  Aligned_cols=171  Identities=19%  Similarity=0.302  Sum_probs=140.2

Q ss_pred             ccCCCcEEEeeCCCCC--CCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEE
Q 048809          225 VLKDCTAISLNNSNIN--ELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTL  301 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L  301 (878)
                      +++-+|.+++++|+++  .+|..+ .+..++.|-+....+..+|++. +.+.+|..|.+++|++.++...++.|+.||.+
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRSV   83 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence            4567899999999987  477777 7889999999999999999885 99999999999999999998899999999999


Q ss_pred             EccCCCCCC---cccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccc
Q 048809          302 SLDYCELGD---MAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRN  378 (878)
Q Consensus       302 ~L~~~~l~~---l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  378 (878)
                      +++.|.++.   |+.|-+|..|.+|||+.|.++..|.++.+-.           ++-.|+++.|.+.             
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AK-----------n~iVLNLS~N~Ie-------------  139 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAK-----------NSIVLNLSYNNIE-------------  139 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhc-----------CcEEEEcccCccc-------------
Confidence            999998763   4889999999999999999999998776544           4455678777765             


Q ss_pred             cCc-ccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEe
Q 048809          379 ASL-HELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI  420 (878)
Q Consensus       379 ~~~-~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~  420 (878)
                      ..+ .-+.++..|-.|+++.|+...+|..+..+.+|+.|.++.
T Consensus       140 tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~  182 (1255)
T KOG0444|consen  140 TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN  182 (1255)
T ss_pred             cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC
Confidence            222 234567778888999999999998888888888887753

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.53  E-value=1.4e-16  Score=141.53  Aligned_cols=166  Identities=23%  Similarity=0.412  Sum_probs=135.0

Q ss_pred             CCCccccCCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCC
Q 048809          220 WPDKDVLKDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNL  298 (878)
Q Consensus       220 ~~~~~~~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L  298 (878)
                      .++--.+..++++.+++|.++.+|+.+ ++.+|++|++++|.+.++|..+ +.+++||.|+++-|++..+|..|+.++-|
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~l  104 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPAL  104 (264)
T ss_pred             cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchh
Confidence            344334567788899999998888887 8889999999999999999886 88999999999999888899999999999


Q ss_pred             cEEEccCCCCCC--c-ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCcccccccccc
Q 048809          299 QTLSLDYCELGD--M-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGE  375 (878)
Q Consensus       299 ~~L~L~~~~l~~--l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~  375 (878)
                      ++|||.+|.+.+  + ..|..++.|+.|.++.|.+.-+|.++++|++||.|           .+..|.+.          
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil-----------~lrdndll----------  163 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQIL-----------SLRDNDLL----------  163 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEE-----------eeccCchh----------
Confidence            999999988652  3 77888888999999999888899999988776655           44444332          


Q ss_pred             ccccCcccccCCCCCCEEEeecCCCCCCCcchhcc
Q 048809          376 RRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFF  410 (878)
Q Consensus       376 ~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l  410 (878)
                         ..+.+++.+.+|++|.+.+|+...+|..++.+
T Consensus       164 ---~lpkeig~lt~lrelhiqgnrl~vlppel~~l  195 (264)
T KOG0617|consen  164 ---SLPKEIGDLTRLRELHIQGNRLTVLPPELANL  195 (264)
T ss_pred             ---hCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence               46788889999999999999988888876543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.43  E-value=2.1e-15  Score=153.06  Aligned_cols=315  Identities=17%  Similarity=0.197  Sum_probs=200.1

Q ss_pred             cccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhccccccccc
Q 048809          515 PVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESS  594 (878)
Q Consensus       515 ~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  594 (878)
                      ..|++|.+++|.....-... .....+|+++.|.+.+|.++++..-....+.++.|+.|++..|..++........    
T Consensus       138 g~lk~LSlrG~r~v~~sslr-t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la----  212 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLR-TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA----  212 (483)
T ss_pred             cccccccccccccCCcchhh-HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH----
Confidence            45788888888654432111 1134678888889999988888766667788888999999988888776544211    


Q ss_pred             CCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc--ccccccccccccccceeEEEEecccccc
Q 048809          595 NSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK--FKSTIHESTKKRFHTIKVLCIEGYDYDG  672 (878)
Q Consensus       595 ~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~--lp~~~~~~~~~~l~~L~~L~l~~c~~~~  672 (878)
                            ..+++|++|+++.|+.++.-........+..++.+...+|..+.  .-......    +.-+..+++.+|..++
T Consensus       213 ------~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~----~~~i~~lnl~~c~~lT  282 (483)
T KOG4341|consen  213 ------EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY----CLEILKLNLQHCNQLT  282 (483)
T ss_pred             ------HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc----ChHhhccchhhhcccc
Confidence                  23888999999988887773333334566778888777887776  11111122    5566777777887766


Q ss_pred             cce-eeeccccccceeeccCCCCchhhhccccc-cccCCccEEEEccCCCcccc--cCcccccCCCcEEEecccCCceEe
Q 048809          673 EEL-FETVENGVNAMIKGINFHPDLKQILKQES-SHANNLEVLEIYGCDNLINL--VPSSTSFQNLTTVAVDFCYGMINI  748 (878)
Q Consensus       673 ~~~-~~~~~~~~~l~~l~l~~~~~l~~i~~~~~-~~l~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~i~~c~~l~~l  748 (878)
                      ++. +........++.++.++|.++.+.....+ .+..+|+.|.+.+|+.+++.  ..-..+.+.|+.+++.+|..+.+.
T Consensus       283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~  362 (483)
T KOG4341|consen  283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG  362 (483)
T ss_pred             chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence            654 33333345566677777776655444333 45677888888888766543  112246677888888777766655


Q ss_pred             echhhhhhhccceEEEEccccccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEE
Q 048809          749 LTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVV  828 (878)
Q Consensus       749 ~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i  828 (878)
                      .....+.+++.|+.|.+++|..+++.....       +.........|..+++++||.+++-...  .+..+++||++++
T Consensus       363 tL~sls~~C~~lr~lslshce~itD~gi~~-------l~~~~c~~~~l~~lEL~n~p~i~d~~Le--~l~~c~~Leri~l  433 (483)
T KOG4341|consen  363 TLASLSRNCPRLRVLSLSHCELITDEGIRH-------LSSSSCSLEGLEVLELDNCPLITDATLE--HLSICRNLERIEL  433 (483)
T ss_pred             hHhhhccCCchhccCChhhhhhhhhhhhhh-------hhhccccccccceeeecCCCCchHHHHH--HHhhCcccceeee
Confidence            334555677788888888887766551111       0011223567777888888877755432  2456777888888


Q ss_pred             cCCCCcccccC--CCccCCCcceeecc
Q 048809          829 EDCPNMSIFSG--GELSTPNLRKVQLK  853 (878)
Q Consensus       829 ~~C~~L~~lp~--~~~~~~~L~~l~i~  853 (878)
                      .+|..+.+=|-  -...+|+++.....
T Consensus       434 ~~~q~vtk~~i~~~~~~lp~i~v~a~~  460 (483)
T KOG4341|consen  434 IDCQDVTKEAISRFATHLPNIKVHAYF  460 (483)
T ss_pred             echhhhhhhhhHHHHhhCccceehhhc
Confidence            88877776432  12346666655543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.42  E-value=7e-15  Score=130.76  Aligned_cols=156  Identities=24%  Similarity=0.406  Sum_probs=137.7

Q ss_pred             CCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCC-cccccCc
Q 048809          239 INELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGD-MAIIGDL  317 (878)
Q Consensus       239 ~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-l~~i~~L  317 (878)
                      +.+++..+.+.+++.|-+++|.+..+|..+ ..+++|++|++++|.|+++|.+|+.++.||.|++.-|++.. +..||.+
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~  101 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF  101 (264)
T ss_pred             HhhcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence            456777778999999999999999999997 89999999999999999999999999999999999999765 4999999


Q ss_pred             ccCcEEEeeCCCcc--cchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEe
Q 048809          318 KKLVILALRGSDMK--ELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEI  395 (878)
Q Consensus       318 ~~L~~L~l~~~~l~--~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l  395 (878)
                      ..|++||+.+|++.  .+|..|-.|+.|+-|           +++.|.+.             ..+..++++++|+.|.+
T Consensus       102 p~levldltynnl~e~~lpgnff~m~tlral-----------yl~dndfe-------------~lp~dvg~lt~lqil~l  157 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFYMTTLRAL-----------YLGDNDFE-------------ILPPDVGKLTNLQILSL  157 (264)
T ss_pred             chhhhhhccccccccccCCcchhHHHHHHHH-----------HhcCCCcc-------------cCChhhhhhcceeEEee
Confidence            99999999999654  689888777766655           66666443             56788999999999999


Q ss_pred             ecCCCCCCCcchhcccCCceEEEE
Q 048809          396 LIQDEKTLPRDLSFFKMLQRYRIL  419 (878)
Q Consensus       396 ~~~~~~~~~~~~~~l~~L~~L~l~  419 (878)
                      ..|+.-++|+.++.+..|+.|.+.
T Consensus       158 rdndll~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  158 RDNDLLSLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             ccCchhhCcHHHHHHHHHHHHhcc
Confidence            999999999999999999998875

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.42  E-value=2.1e-15  Score=153.05  Aligned_cols=273  Identities=16%  Similarity=0.183  Sum_probs=117.7

Q ss_pred             cccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhccccccc
Q 048809          513 AFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDE  592 (878)
Q Consensus       513 ~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  592 (878)
                      .+|+++.|.+.+|.++++..... ....+++|+.|.+..|+.+++........++++|++|+++.|+.+..-.....   
T Consensus       162 ~CpnIehL~l~gc~~iTd~s~~s-la~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~---  237 (483)
T KOG4341|consen  162 NCPNIEHLALYGCKKITDSSLLS-LARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL---  237 (483)
T ss_pred             hCCchhhhhhhcceeccHHHHHH-HHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH---
Confidence            45555555555555444321100 01234555555555555555543333344555555555555555443111100   


Q ss_pred             ccCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-cc-ccccccccccccceeEEEEecccc
Q 048809          593 SSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FK-STIHESTKKRFHTIKVLCIEGYDY  670 (878)
Q Consensus       593 ~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp-~~~~~~~~~~l~~L~~L~l~~c~~  670 (878)
                             ...+..++.+.+.+|..+..-........++-+.++++.+|..++ .. ..+..+    +..|+.|+.++|..
T Consensus       238 -------~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~----c~~lq~l~~s~~t~  306 (483)
T KOG4341|consen  238 -------QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG----CHALQVLCYSSCTD  306 (483)
T ss_pred             -------hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh----hhHhhhhcccCCCC
Confidence                   011333444444444433321111112233444445555555554 11 111112    45555555555555


Q ss_pred             cccceeeeccc-cccceeeccCCCCchhhhccccc-cccCCccEEEEccCCCcccc--cCcccccCCCcEEEecccCCce
Q 048809          671 DGEELFETVEN-GVNAMIKGINFHPDLKQILKQES-SHANNLEVLEIYGCDNLINL--VPSSTSFQNLTTVAVDFCYGMI  746 (878)
Q Consensus       671 ~~~~~~~~~~~-~~~l~~l~l~~~~~l~~i~~~~~-~~l~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~i~~c~~l~  746 (878)
                      +++......+. .++|+++.+..|..+.......+ .+.+.|+.+++.+|....+.  ..-..+++.|+.|.++.|..++
T Consensus       307 ~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~it  386 (483)
T KOG4341|consen  307 ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELIT  386 (483)
T ss_pred             CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhh
Confidence            44444333322 24455555555555444432222 34455555555555444322  1122345555555555555554


Q ss_pred             Eeec---hhhhhhhccceEEEEccccccccccccccccccccccccccccccchhhccccCcccceee
Q 048809          747 NILT---SSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFC  811 (878)
Q Consensus       747 ~l~~---~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~  811 (878)
                      +...   .....+...|+.+.+++|+.+++..-.           ....++.|+.+++.+|...+.-+
T Consensus       387 D~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-----------~l~~c~~Leri~l~~~q~vtk~~  443 (483)
T KOG4341|consen  387 DEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-----------HLSICRNLERIELIDCQDVTKEA  443 (483)
T ss_pred             hhhhhhhhhccccccccceeeecCCCCchHHHHH-----------HHhhCcccceeeeechhhhhhhh
Confidence            4311   111123344555555555555443221           12234455555555555554443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.40  E-value=1.4e-14  Score=145.78  Aligned_cols=114  Identities=23%  Similarity=0.408  Sum_probs=82.1

Q ss_pred             EEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccC-CCCC
Q 048809          232 ISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDY-CELG  309 (878)
Q Consensus       232 l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~-~~l~  309 (878)
                      ++-++..++++|..+. +....++|..|.+..||+++|+.+++||.||||+|.|+.| |+.|..|..|-.|-+-+ |+|+
T Consensus        51 VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             EEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            3444455666665542 3556778888888888888888888888888888888776 77788888877666655 6688


Q ss_pred             Cc--ccccCcccCcEEEeeCCCcccchHh-hcccccCccc
Q 048809          310 DM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLL  346 (878)
Q Consensus       310 ~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L  346 (878)
                      ++  ..|++|..|+.|.+.-|++.-++.+ +..|.+|..|
T Consensus       130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lL  169 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLL  169 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchh
Confidence            76  6688888888888887777766544 6666655544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.40  E-value=2.3e-13  Score=160.19  Aligned_cols=119  Identities=24%  Similarity=0.360  Sum_probs=95.8

Q ss_pred             CCCcEEEeeCCC--CCCCCCC--CCCCCccEEEeecC-CCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEE
Q 048809          227 KDCTAISLNNSN--INELPQG--FECPQLKYFRIHND-HSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTL  301 (878)
Q Consensus       227 ~~lr~l~l~~~~--~~~l~~~--~~~~~Lr~L~l~~~-~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L  301 (878)
                      .+++.|-+..|.  +..++..  ..+|.||+||+++| ...++|..+ +.+-|||||+|+++.+..+|.++++|+.|+||
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence            368999998886  6667663  37999999999998 778999886 99999999999999999999999999999999


Q ss_pred             EccCCC-CCCc-ccccCcccCcEEEeeCCCcccchHhhcccccCccc
Q 048809          302 SLDYCE-LGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL  346 (878)
Q Consensus       302 ~L~~~~-l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L  346 (878)
                      ++..+. +..+ ..+..|.+||+|.+.......-...++.+.+|++|
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L  670 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL  670 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence            999997 5666 45556999999999887533322334444544444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.38  E-value=7.1e-12  Score=144.35  Aligned_cols=94  Identities=21%  Similarity=0.289  Sum_probs=41.9

Q ss_pred             EEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCC
Q 048809          231 AISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGD  310 (878)
Q Consensus       231 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~  310 (878)
                      .|+++.+.++.+|..+. ++|+.|.+.+|.+..+|.    .+++|++|++++|.++.+|..   ..+|++|++++|.++.
T Consensus       205 ~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~  276 (788)
T PRK15387        205 VLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTH  276 (788)
T ss_pred             EEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhh
Confidence            44444444444444331 245555555554444443    134455555555555444432   2344455555554443


Q ss_pred             cccccCcccCcEEEeeCCCcccch
Q 048809          311 MAIIGDLKKLVILALRGSDMKELV  334 (878)
Q Consensus       311 l~~i~~L~~L~~L~l~~~~l~~lp  334 (878)
                      ++.  -..+|+.|++++|+++.+|
T Consensus       277 Lp~--lp~~L~~L~Ls~N~Lt~LP  298 (788)
T PRK15387        277 LPA--LPSGLCKLWIFGNQLTSLP  298 (788)
T ss_pred             hhh--chhhcCEEECcCCcccccc
Confidence            321  1133444455555444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.36  E-value=3.3e-12  Score=148.15  Aligned_cols=101  Identities=17%  Similarity=0.287  Sum_probs=68.5

Q ss_pred             CCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCC
Q 048809          228 DCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCE  307 (878)
Q Consensus       228 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~  307 (878)
                      +...+.+.++.++.+|..+ .++|+.|++++|.+..+|..++   .+|++|++++|.++.+|..+.  .+|+.|+|++|.
T Consensus       179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~  252 (754)
T PRK15370        179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR  252 (754)
T ss_pred             CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence            4566777777777777644 2467777777777777776653   467777777777777776554  367777777777


Q ss_pred             CCCc-ccccCcccCcEEEeeCCCcccchHh
Q 048809          308 LGDM-AIIGDLKKLVILALRGSDMKELVGE  336 (878)
Q Consensus       308 l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~  336 (878)
                      ++.+ ..+.  .+|++|++++|+++.+|..
T Consensus       253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~  280 (754)
T PRK15370        253 ITELPERLP--SALQSLDLFHNKISCLPEN  280 (754)
T ss_pred             cCcCChhHh--CCCCEEECcCCccCccccc
Confidence            6655 3333  4677777777777766654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.35  E-value=1.7e-11  Score=141.34  Aligned_cols=249  Identities=19%  Similarity=0.144  Sum_probs=169.5

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCC
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLL  295 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L  295 (878)
                      .+...|. .++.+++.|++.+|.++.+|..  .++|++|++++|.+..+|..    .++|+.|++++|.+..+|...   
T Consensus       212 ~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~lp---  281 (788)
T PRK15387        212 GLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPALP---  281 (788)
T ss_pred             CCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhch---
Confidence            4444443 4566899999999999999874  58999999999999999852    468999999999999888743   


Q ss_pred             CCCcEEEccCCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCcccccccccc
Q 048809          296 QNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGE  375 (878)
Q Consensus       296 ~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~  375 (878)
                      .+|+.|++++|.++.++.  .+.+|++|++++|.++.+|....              +|+.|++.+|.+..         
T Consensus       282 ~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp~--------------~L~~L~Ls~N~L~~---------  336 (788)
T PRK15387        282 SGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALPS--------------ELCKLWAYNNQLTS---------  336 (788)
T ss_pred             hhcCEEECcCCccccccc--cccccceeECCCCccccCCCCcc--------------cccccccccCcccc---------
Confidence            578899999999887743  24789999999999988875322              34455666665541         


Q ss_pred             ccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHh
Q 048809          376 RRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIM  455 (878)
Q Consensus       376 ~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~  455 (878)
                          .+ .  -..+|+.|++++|....+|..   ..+|+.|.+..+...                           .++.
T Consensus       337 ----LP-~--lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~---------------------------~LP~  379 (788)
T PRK15387        337 ----LP-T--LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT---------------------------SLPA  379 (788)
T ss_pred             ----cc-c--cccccceEecCCCccCCCCCC---Ccccceehhhccccc---------------------------cCcc
Confidence                11 1  114688888888887777753   345555555321110                           0111


Q ss_pred             hccccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCC
Q 048809          456 QLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGP  535 (878)
Q Consensus       456 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~  535 (878)
                      .+.+|+.|+++++.. .. ++.    ..++|+.|+++++. +..++          ..+.+|+.|++++ +.++.++.  
T Consensus       380 l~~~L~~LdLs~N~L-t~-LP~----l~s~L~~LdLS~N~-LssIP----------~l~~~L~~L~Ls~-NqLt~LP~--  439 (788)
T PRK15387        380 LPSGLKELIVSGNRL-TS-LPV----LPSELKELMVSGNR-LTSLP----------MLPSGLLSLSVYR-NQLTRLPE--  439 (788)
T ss_pred             cccccceEEecCCcc-cC-CCC----cccCCCEEEccCCc-CCCCC----------cchhhhhhhhhcc-CcccccCh--
Confidence            235788888876543 22 222    24689999998864 44432          1235688888887 45666532  


Q ss_pred             CCccccCCccEEEeecCCCcccc
Q 048809          536 LAAESFCKVKDIRVEWCDKLKNV  558 (878)
Q Consensus       536 ~~~~~l~~L~~L~l~~c~~L~~l  558 (878)
                       .+..+++|+.|++.++ .+...
T Consensus       440 -sl~~L~~L~~LdLs~N-~Ls~~  460 (788)
T PRK15387        440 -SLIHLSSETTVNLEGN-PLSER  460 (788)
T ss_pred             -HHhhccCCCeEECCCC-CCCch
Confidence             3567889999999885 45443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.30  E-value=7.5e-12  Score=145.21  Aligned_cols=153  Identities=19%  Similarity=0.301  Sum_probs=113.3

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCC
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLL  295 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L  295 (878)
                      .+...|. .++..++.|++++|.++.+|.... ++|++|++++|.+..+|..+.   .+|+.|+|++|.+..+|..+.  
T Consensus       189 ~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--  261 (754)
T PRK15370        189 GLTTIPA-CIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITELPERLP--  261 (754)
T ss_pred             CcCcCCc-ccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh---ccccEEECcCCccCcCChhHh--
Confidence            3344443 356789999999999999987653 699999999999999998653   479999999999999998875  


Q ss_pred             CCCcEEEccCCCCCCc-ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccc
Q 048809          296 QNLQTLSLDYCELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDG  374 (878)
Q Consensus       296 ~~L~~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~  374 (878)
                      .+|++|++++|.++.+ ..+.  .+|++|++++|+++.+|..+.             .+|+.|++.+|.+..        
T Consensus       262 s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp-------------~sL~~L~Ls~N~Lt~--------  318 (754)
T PRK15370        262 SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP-------------SGITHLNVQSNSLTA--------  318 (754)
T ss_pred             CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch-------------hhHHHHHhcCCcccc--------
Confidence            5899999999998876 4454  589999999999988886442             134455666665541        


Q ss_pred             cccccCcccccCCCCCCEEEeecCCCCCCCc
Q 048809          375 ERRNASLHELNNLSKLTSLEILIQDEKTLPR  405 (878)
Q Consensus       375 ~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~  405 (878)
                           .+..+  .++|+.|++++|....+|.
T Consensus       319 -----LP~~l--~~sL~~L~Ls~N~Lt~LP~  342 (754)
T PRK15370        319 -----LPETL--PPGLKTLEAGENALTSLPA  342 (754)
T ss_pred             -----CCccc--cccceeccccCCccccCCh
Confidence                 11111  2467777777776665554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.09  E-value=1e-11  Score=125.55  Aligned_cols=131  Identities=22%  Similarity=0.371  Sum_probs=113.5

Q ss_pred             ccCCCCCCccccCCCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeC-CCCCCCCcc
Q 048809          215 VPLTSWPDKDVLKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTR-MHLLALPSS  291 (878)
Q Consensus       215 ~~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~-~~i~~lp~~  291 (878)
                      +.+.+.| .+.+.....|.|..|.|+.||+..  .+++||.|++++|.+..|.++.|..++.|-.|-+-+ |+|+.+|..
T Consensus        56 ~GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~  134 (498)
T KOG4237|consen   56 KGLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG  134 (498)
T ss_pred             CCcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence            3444444 357888899999999999999877  899999999999999999999999999987776665 899999954


Q ss_pred             -ccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccchH-hhcccccCccc
Q 048809          292 -LGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLL  346 (878)
Q Consensus       292 -i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L  346 (878)
                       |+.|..||.|.+.-|++.-+  ..+..|++|..|.+..|.+..++. .+..+.+++++
T Consensus       135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl  193 (498)
T KOG4237|consen  135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL  193 (498)
T ss_pred             HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence             79999999999999998754  789999999999999999999888 58888888887

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=3.2e-10  Score=107.00  Aligned_cols=119  Identities=24%  Similarity=0.362  Sum_probs=51.0

Q ss_pred             cCCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccc-cCCCCCcEEEc
Q 048809          226 LKDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSL-GLLQNLQTLSL  303 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~L~L  303 (878)
                      +.+.|.|++.++.|+.+.... .+.+|++|++++|.+..++.  +..+++|++|++++|.|+.+++.+ ..+++|++|++
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            345799999999999887654 57899999999999999875  689999999999999999997666 46899999999


Q ss_pred             cCCCCCCc---ccccCcccCcEEEeeCCCcccchHh----hcccccCccc
Q 048809          304 DYCELGDM---AIIGDLKKLVILALRGSDMKELVGE----IGQLTQLRLL  346 (878)
Q Consensus       304 ~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L  346 (878)
                      ++|.|.++   ..+..+++|++|++.+|.+...+.-    +..+++|+.|
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~L  145 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVL  145 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhee
Confidence            99998755   6778899999999999977765432    4555555444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.98  E-value=2.3e-10  Score=107.94  Aligned_cols=95  Identities=20%  Similarity=0.296  Sum_probs=22.4

Q ss_pred             eCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhc-CCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCc-c
Q 048809          235 NNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFT-GMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM-A  312 (878)
Q Consensus       235 ~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~-~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-~  312 (878)
                      ..+.|+.++...+..++|.|++.+|.+..+..  ++ .+.+|++|||++|.|++++ .+..+++|++|++++|.|+.+ .
T Consensus         5 t~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~   81 (175)
T PF14580_consen    5 TANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISE   81 (175)
T ss_dssp             -------------------------------S----TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CH
T ss_pred             cccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcccc
Confidence            34445556655566667777777776666643  23 4667777777777777664 466677777777777777666 3


Q ss_pred             cc-cCcccCcEEEeeCCCccc
Q 048809          313 II-GDLKKLVILALRGSDMKE  332 (878)
Q Consensus       313 ~i-~~L~~L~~L~l~~~~l~~  332 (878)
                      .+ ..+++|++|++++|++..
T Consensus        82 ~l~~~lp~L~~L~L~~N~I~~  102 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNNKISD  102 (175)
T ss_dssp             HHHHH-TT--EEE-TTS---S
T ss_pred             chHHhCCcCCEEECcCCcCCC
Confidence            34 356777777777776654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.88  E-value=1.9e-10  Score=121.80  Aligned_cols=167  Identities=23%  Similarity=0.316  Sum_probs=134.2

Q ss_pred             CCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809          227 KDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY  305 (878)
Q Consensus       227 ~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~  305 (878)
                      ......+++.|.+.++|... .+..|..+.+..|.+..+|..+ +.+..|.+|||+.|.++.+|..++.|+ |++|.+++
T Consensus        75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence            34567888899999998877 6778889999999999999886 899999999999999999999998876 99999999


Q ss_pred             CCCCCc-ccccCcccCcEEEeeCCCcccchHhhcccccCccc---------cccccc--CCcEEEccCCCCCcccccccc
Q 048809          306 CELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL---------IAPILS--RLEELYIGESPIEWGKVEGVD  373 (878)
Q Consensus       306 ~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L---------ip~~l~--~L~~L~l~~~~~~~~~~~~~~  373 (878)
                      |+++.+ ..++.+..|..||.+.|.+..+|..++.|.+|+.|         +|..+.  .|..|+++.|.+.        
T Consensus       153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis--------  224 (722)
T KOG0532|consen  153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS--------  224 (722)
T ss_pred             CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee--------
Confidence            998876 88999999999999999999999999999998888         444332  3456666666554        


Q ss_pred             ccccccCcccccCCCCCCEEEeecCCCCCCCcchh
Q 048809          374 GERRNASLHELNNLSKLTSLEILIQDEKTLPRDLS  408 (878)
Q Consensus       374 ~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~  408 (878)
                           ..+..+.+|++|++|-|.+|....-|..++
T Consensus       225 -----~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC  254 (722)
T KOG0532|consen  225 -----YLPVDFRKMRHLQVLQLENNPLQSPPAQIC  254 (722)
T ss_pred             -----ecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence                 345566677777777777777766666654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.81  E-value=2.6e-10  Score=120.77  Aligned_cols=174  Identities=22%  Similarity=0.355  Sum_probs=147.3

Q ss_pred             EEEeeCCCCCCCCCC---CCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCC
Q 048809          231 AISLNNSNINELPQG---FECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCE  307 (878)
Q Consensus       231 ~l~l~~~~~~~l~~~---~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~  307 (878)
                      ++.|++..++++|..   +.+......+++.|+...+|..+ +.+..|..|.|..|.|..+|..+++|..|.||+|+.|.
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence            455666666666543   36667778999999999999885 88999999999999999999999999999999999999


Q ss_pred             CCCc-ccccCcccCcEEEeeCCCcccchHhhcccccCccc---------ccc---cccCCcEEEccCCCCCccccccccc
Q 048809          308 LGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL---------IAP---ILSRLEELYIGESPIEWGKVEGVDG  374 (878)
Q Consensus       308 l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L---------ip~---~l~~L~~L~l~~~~~~~~~~~~~~~  374 (878)
                      ++.+ ..++.|. |++|-+++|+++.+|.+++-+.+|.+|         +|.   ++.+|+.|.+..|.+.         
T Consensus       133 lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~---------  202 (722)
T KOG0532|consen  133 LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE---------  202 (722)
T ss_pred             hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh---------
Confidence            9876 6677665 899999999999999999988888888         444   6778888888877664         


Q ss_pred             cccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEe
Q 048809          375 ERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI  420 (878)
Q Consensus       375 ~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~  420 (878)
                          ..++++..| .|..|++++|++..+|..+..+..|+.|.+..
T Consensus       203 ----~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~Len  243 (722)
T KOG0532|consen  203 ----DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLEN  243 (722)
T ss_pred             ----hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeecc
Confidence                467788866 59999999999999999999999999999864

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.75  E-value=1.1e-09  Score=106.85  Aligned_cols=121  Identities=22%  Similarity=0.338  Sum_probs=106.5

Q ss_pred             cccCCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEE
Q 048809          224 DVLKDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLS  302 (878)
Q Consensus       224 ~~~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~  302 (878)
                      +.|+.+..+++++|.|+.+..++ -.|++|.|+++.|.+..+..  +..+.+|..||||+|.++++-..-.+|-|.++|.
T Consensus       281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence            44777899999999999998888 47999999999998888876  5899999999999999988766667889999999


Q ss_pred             ccCCCCCCcccccCcccCcEEEeeCCCcccch--HhhcccccCccc
Q 048809          303 LDYCELGDMAIIGDLKKLVILALRGSDMKELV--GEIGQLTQLRLL  346 (878)
Q Consensus       303 L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L  346 (878)
                      |++|.++.++.+++|.+|..||+++|+|..+.  .+||+|+.|+++
T Consensus       359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence            99999999999999999999999999988765  358888777666

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.67  E-value=6.4e-09  Score=112.16  Aligned_cols=103  Identities=26%  Similarity=0.299  Sum_probs=56.5

Q ss_pred             CcEEEeeCCCCCC-----CCCCC-CCCCccEEEeecCCCCCCCc------hhhcCCCCCcEEEeeCCCCC-CCCccccCC
Q 048809          229 CTAISLNNSNINE-----LPQGF-ECPQLKYFRIHNDHSLKIPD------NFFTGMTELRVLDFTRMHLL-ALPSSLGLL  295 (878)
Q Consensus       229 lr~l~l~~~~~~~-----l~~~~-~~~~Lr~L~l~~~~~~~l~~------~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L  295 (878)
                      ++.+.+.++.++.     ++... ..+++++|+++++.....+.      ..|..+.+|+.|++++|.+. ..+..+..+
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l  104 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL  104 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence            5666666665532     22222 44556677776664442111      23456667777777777664 233334333


Q ss_pred             CC---CcEEEccCCCCCC-----c-ccccCc-ccCcEEEeeCCCcc
Q 048809          296 QN---LQTLSLDYCELGD-----M-AIIGDL-KKLVILALRGSDMK  331 (878)
Q Consensus       296 ~~---L~~L~L~~~~l~~-----l-~~i~~L-~~L~~L~l~~~~l~  331 (878)
                      .+   |++|++++|.+..     + ..+..+ .+|+.|++++|.++
T Consensus       105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116         105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            33   7777777776552     1 344555 66777777776655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.62  E-value=2.5e-08  Score=107.57  Aligned_cols=33  Identities=18%  Similarity=0.090  Sum_probs=17.0

Q ss_pred             CCCCCEEEeecCCCC-----CCCcchhcccCCceEEEE
Q 048809          387 LSKLTSLEILIQDEK-----TLPRDLSFFKMLQRYRIL  419 (878)
Q Consensus       387 l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~~L~l~  419 (878)
                      ..+|++|+++++...     .+...+..+++|+.++++
T Consensus       249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~  286 (319)
T cd00116         249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLR  286 (319)
T ss_pred             CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECC
Confidence            356777777766543     112222234556666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.57  E-value=3.8e-08  Score=76.12  Aligned_cols=60  Identities=28%  Similarity=0.536  Sum_probs=48.1

Q ss_pred             CCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCC
Q 048809          249 PQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCEL  308 (878)
Q Consensus       249 ~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l  308 (878)
                      |+|++|++++|.+..+|.+.|..+++|++|++++|.++.+| ..|..+++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46788888888888888888888888888888888888775 4678888888888888763

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.55  E-value=2.3e-08  Score=97.73  Aligned_cols=170  Identities=20%  Similarity=0.307  Sum_probs=102.0

Q ss_pred             ccCCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCC----CCchh-------------------hcCCCCCcEEEe
Q 048809          225 VLKDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLK----IPDNF-------------------FTGMTELRVLDF  280 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~----l~~~~-------------------~~~l~~Lr~L~L  280 (878)
                      ++++++.+-++.+.-+.|.... .-|.|.++.+....+..    +|...                   ...-+.|..|||
T Consensus       212 ~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDL  291 (490)
T KOG1259|consen  212 AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDL  291 (490)
T ss_pred             HhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccc
Confidence            4566777777776655444333 34667777666542221    11111                   012245888899


Q ss_pred             eCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEcc
Q 048809          281 TRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIG  360 (878)
Q Consensus       281 s~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~  360 (878)
                      |+|.|+.+-+++.-++.+|.|++++|.+..+.++..|.+|++||+++|.++++..--.+|           .+.+.|.+.
T Consensus       292 S~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL-----------GNIKtL~La  360 (490)
T KOG1259|consen  292 SGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKL-----------GNIKTLKLA  360 (490)
T ss_pred             cccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhh-----------cCEeeeehh
Confidence            999998888888888899999999999888877888899999999998776654432222           333444444


Q ss_pred             CCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCC--cchhcccCCceEEEE
Q 048809          361 ESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLP--RDLSFFKMLQRYRIL  419 (878)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~  419 (878)
                      +|.+.              .+..|+++-+|..|++++|++..+.  ..+++++.|+.+.+.
T Consensus       361 ~N~iE--------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~  407 (490)
T KOG1259|consen  361 QNKIE--------------TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT  407 (490)
T ss_pred             hhhHh--------------hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence            44332              2344455555555555555544332  233345555544443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.53  E-value=7.2e-08  Score=107.08  Aligned_cols=167  Identities=24%  Similarity=0.361  Sum_probs=89.8

Q ss_pred             CCcEEEeeCCCCCCCCCCCCCC--CccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809          228 DCTAISLNNSNINELPQGFECP--QLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY  305 (878)
Q Consensus       228 ~lr~l~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~  305 (878)
                      .+..+++.++.+.+++......  +|+.|++++|.+..+|..+ ..+++|+.|++++|.+..+|...+.+.+|+.|++++
T Consensus       117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~  195 (394)
T COG4886         117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG  195 (394)
T ss_pred             ceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence            3455555555555555544332  5555555555555554332 555555555555555555555554555555555555


Q ss_pred             CCCCCc-ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809          306 CELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL  384 (878)
Q Consensus       306 ~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  384 (878)
                      |.++.+ ..++.+.+|++|.+++|.+...+..+.++.++.           .|.+..+.+.             ..+..+
T Consensus       196 N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~-----------~l~l~~n~~~-------------~~~~~~  251 (394)
T COG4886         196 NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLS-----------GLELSNNKLE-------------DLPESI  251 (394)
T ss_pred             CccccCchhhhhhhhhhhhhhcCCcceecchhhhhccccc-----------ccccCCceee-------------eccchh
Confidence            555544 223444445555555554444444444444333           3333333222             124566


Q ss_pred             cCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEe
Q 048809          385 NNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI  420 (878)
Q Consensus       385 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~  420 (878)
                      +.+.+++.|+++++.+..++. +..+.+++.+++..
T Consensus       252 ~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~  286 (394)
T COG4886         252 GNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSG  286 (394)
T ss_pred             ccccccceecccccccccccc-ccccCccCEEeccC
Confidence            677778888888887777766 55777777777653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.52  E-value=8.8e-08  Score=106.40  Aligned_cols=170  Identities=26%  Similarity=0.416  Sum_probs=132.1

Q ss_pred             EEEeeCCCC-CCCCCCCCCCCccEEEeecCCCCCCCchhhcCCC-CCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCC
Q 048809          231 AISLNNSNI-NELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMT-ELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCEL  308 (878)
Q Consensus       231 ~l~l~~~~~-~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~-~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l  308 (878)
                      .+....+.+ ..+.....++.++.|++.++.+.+++... ..+. +|+.|++++|.+..+|..++.+++|+.|++++|.+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence            355666555 33333446688999999999999999865 5664 99999999999999999999999999999999999


Q ss_pred             CCc-ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCC
Q 048809          309 GDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNL  387 (878)
Q Consensus       309 ~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l  387 (878)
                      +++ ...+.+.+|+.|++++|.+..+|..++.+..|           +.|.+.+|..             ...+..+.++
T Consensus       176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L-----------~~l~~~~N~~-------------~~~~~~~~~~  231 (394)
T COG4886         176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSAL-----------EELDLSNNSI-------------IELLSSLSNL  231 (394)
T ss_pred             hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhh-----------hhhhhcCCcc-------------eecchhhhhc
Confidence            988 44559999999999999999999877555544           4446655532             1355667788


Q ss_pred             CCCCEEEeecCCCCCCCcchhcccCCceEEEEeccccc
Q 048809          388 SKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWT  425 (878)
Q Consensus       388 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  425 (878)
                      .++..+.+..++...++..+..+..++.|+++.+....
T Consensus       232 ~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         232 KNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             ccccccccCCceeeeccchhccccccceeccccccccc
Confidence            88888888888887777888788889999887544433

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.49  E-value=2.5e-07  Score=97.99  Aligned_cols=70  Identities=26%  Similarity=0.339  Sum_probs=44.0

Q ss_pred             ccceeEEEEecccccccceeeeccccccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcE
Q 048809          657 FHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTT  736 (878)
Q Consensus       657 l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~  736 (878)
                      +..++.|+|++|.                    |..+|.+          +.+|++|.+++|..++.+|..+  .++|+.
T Consensus        51 ~~~l~~L~Is~c~--------------------L~sLP~L----------P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~   98 (426)
T PRK15386         51 ARASGRLYIKDCD--------------------IESLPVL----------PNELTEITIENCNNLTTLPGSI--PEGLEK   98 (426)
T ss_pred             hcCCCEEEeCCCC--------------------CcccCCC----------CCCCcEEEccCCCCcccCCchh--hhhhhh
Confidence            6778888888884                    3333321          3567777777777776665432  357777


Q ss_pred             EEecccCCceEeechhhhhhhccceEEEEc
Q 048809          737 VAVDFCYGMINILTSSTAKSLVRLKQMKIF  766 (878)
Q Consensus       737 L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~  766 (878)
                      |++++|.++..++        ++|+.|++.
T Consensus        99 L~Ls~Cs~L~sLP--------~sLe~L~L~  120 (426)
T PRK15386         99 LTVCHCPEISGLP--------ESVRSLEIK  120 (426)
T ss_pred             eEccCcccccccc--------cccceEEeC
Confidence            7777776665542        246666664

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.35  E-value=3.4e-07  Score=97.05  Aligned_cols=136  Identities=18%  Similarity=0.251  Sum_probs=86.9

Q ss_pred             cccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccccccccccccccccccc
Q 048809          705 SHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDN  784 (878)
Q Consensus       705 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~  784 (878)
                      ..+..++.|++++| .++++|   ...++|++|.+++|++++.++ ..+   .++|+.|+|++|..+..+|.....-.+.
T Consensus        49 ~~~~~l~~L~Is~c-~L~sLP---~LP~sLtsL~Lsnc~nLtsLP-~~L---P~nLe~L~Ls~Cs~L~sLP~sLe~L~L~  120 (426)
T PRK15386         49 EEARASGRLYIKDC-DIESLP---VLPNELTEITIENCNNLTTLP-GSI---PEGLEKLTVCHCPEISGLPESVRSLEIK  120 (426)
T ss_pred             HHhcCCCEEEeCCC-CCcccC---CCCCCCcEEEccCCCCcccCC-chh---hhhhhheEccCcccccccccccceEEeC
Confidence            34578999999999 788887   245689999999999998873 222   2589999999998888776532100000


Q ss_pred             --cccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccCCCccCCCcceeeccc
Q 048809          785 --YAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQ  854 (878)
Q Consensus       785 --~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~~~~L~~l~i~~  854 (878)
                        ........+++|+.|.+.++.........   ..-+++|++|.|++|..+. +|.+.  +.+|+.|.+..
T Consensus       121 ~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls~  186 (426)
T PRK15386        121 GSATDSIKNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII-LPEKL--PESLQSITLHI  186 (426)
T ss_pred             CCCCcccccCcchHhheeccccccccccccc---cccCCcccEEEecCCCccc-Ccccc--cccCcEEEecc
Confidence              00011234456666666432211111000   1124689999999998664 56543  68999999875

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=2e-07  Score=96.51  Aligned_cols=13  Identities=15%  Similarity=0.353  Sum_probs=7.1

Q ss_pred             hhhccceEEEEcc
Q 048809          755 KSLVRLKQMKIFH  767 (878)
Q Consensus       755 ~~l~~L~~L~i~~  767 (878)
                      ..+++|+.|++..
T Consensus       298 ~~f~kL~~L~i~~  310 (505)
T KOG3207|consen  298 HTFPKLEYLNISE  310 (505)
T ss_pred             cccccceeeeccc
Confidence            3445566665555

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.30  E-value=4.4e-07  Score=70.14  Aligned_cols=58  Identities=29%  Similarity=0.465  Sum_probs=51.9

Q ss_pred             CCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCc
Q 048809          273 TELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDM  330 (878)
Q Consensus       273 ~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l  330 (878)
                      ++|++|++++|.++.+| ..|..+++|++|++++|.++.+  ..+.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            47899999999999997 5678999999999999999876  6789999999999999864

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=2.3e-08  Score=97.90  Aligned_cols=111  Identities=14%  Similarity=0.136  Sum_probs=54.0

Q ss_pred             CccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecC
Q 048809          543 KVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCT  622 (878)
Q Consensus       543 ~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~  622 (878)
                      +|+.|++++ ..++.-......++|.+|+.|.+.|..--..+......            -..|+.|+++.|..++....
T Consensus       186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk------------N~~L~~lnlsm~sG~t~n~~  252 (419)
T KOG2120|consen  186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK------------NSNLVRLNLSMCSGFTENAL  252 (419)
T ss_pred             hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc------------cccceeeccccccccchhHH
Confidence            355555544 22332222223455566666666654322223222221            45666666666666665444


Q ss_pred             CCcccccCCcceEEEecCCCcc--ccccccccccccccceeEEEEecccc
Q 048809          623 GDLHFEFPSLEKLKILECPQVK--FKSTIHESTKKRFHTIKVLCIEGYDY  670 (878)
Q Consensus       623 ~~~~~~~~~L~~L~l~~C~~l~--lp~~~~~~~~~~l~~L~~L~l~~c~~  670 (878)
                      .....+|..|.+|+++.|.-.+  ....+..-    -++|+.|+|+||..
T Consensus       253 ~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi----se~l~~LNlsG~rr  298 (419)
T KOG2120|consen  253 QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI----SETLTQLNLSGYRR  298 (419)
T ss_pred             HHHHHhhhhHhhcCchHhhccchhhhHHHhhh----chhhhhhhhhhhHh
Confidence            3344556666666666665444  11111111    34566666666654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.27  E-value=2.2e-08  Score=114.92  Aligned_cols=119  Identities=17%  Similarity=0.217  Sum_probs=71.0

Q ss_pred             cCCccEEEeecCCCcccccchhhhhhccCccEEEEecC-CcchhhhcccccccccCCCCccccccccceeecccCCCcce
Q 048809          541 FCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGC-QNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTS  619 (878)
Q Consensus       541 l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c-~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~  619 (878)
                      ++.|+.+.+.+|..+...........++.|++|++++| ......+....        .....+++|+.|+++.|..+++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~~~~~~L~~l~l~~~~~isd  258 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLL--------LLLSICRKLKSLDLSGCGLVTD  258 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhh--------hhhhhcCCcCccchhhhhccCc
Confidence            56777777777777666332234566777777777773 22211110000        0112367788888888776665


Q ss_pred             ecCCCcccccCCcceEEEecCCCcc--ccccccccccccccceeEEEEeccccc
Q 048809          620 FCTGDLHFEFPSLEKLKILECPQVK--FKSTIHESTKKRFHTIKVLCIEGYDYD  671 (878)
Q Consensus       620 ~~~~~~~~~~~~L~~L~l~~C~~l~--lp~~~~~~~~~~l~~L~~L~l~~c~~~  671 (878)
                      .........+++|++|.+.+|..++  --..+.+.    +++|++|+|++|..+
T Consensus       259 ~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~----~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  259 IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER----CPSLRELDLSGCHGL  308 (482)
T ss_pred             hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh----cCcccEEeeecCccc
Confidence            4433333447788888888887765  22223333    778888888888763

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=1.9e-07  Score=96.61  Aligned_cols=104  Identities=23%  Similarity=0.254  Sum_probs=73.2

Q ss_pred             ccCCCcEEEeeCCCCCCCCC--C-CCCCCccEEEeecCCCCCC--CchhhcCCCCCcEEEeeCCCCCCCCccc--cCCCC
Q 048809          225 VLKDCTAISLNNSNINELPQ--G-FECPQLKYFRIHNDHSLKI--PDNFFTGMTELRVLDFTRMHLLALPSSL--GLLQN  297 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~--~-~~~~~Lr~L~l~~~~~~~l--~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i--~~L~~  297 (878)
                      ..+++|.+++.++.+...+.  . -.|+++|.|++++|-+...  --.+...+++|+.|+|+.|.+...-.+.  ..+.+
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            35678888888888776653  2 2788999999998832221  1234578889999999988875443332  36778


Q ss_pred             CcEEEccCCCCC--Cc-ccccCcccCcEEEeeCC
Q 048809          298 LQTLSLDYCELG--DM-AIIGDLKKLVILALRGS  328 (878)
Q Consensus       298 L~~L~L~~~~l~--~l-~~i~~L~~L~~L~l~~~  328 (878)
                      |..|.|+.|.++  ++ ...-..++|..|++.+|
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            888899998876  34 45566777888888877

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.21  E-value=1.3e-06  Score=61.55  Aligned_cols=42  Identities=31%  Similarity=0.501  Sum_probs=28.0

Q ss_pred             CCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccc
Q 048809          273 TELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAII  314 (878)
Q Consensus       273 ~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i  314 (878)
                      ++|++|++++|.|+.+|..+++|++|++|++++|.+++++.+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l   42 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPL   42 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCC
Confidence            367777777777777777677777777777777776655433

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=8.8e-08  Score=93.88  Aligned_cols=186  Identities=17%  Similarity=0.113  Sum_probs=117.1

Q ss_pred             cccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc--ccccccccccccccceeEEEEecccccccceeeeccc
Q 048809          604 TQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK--FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVEN  681 (878)
Q Consensus       604 ~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~--lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~  681 (878)
                      +.|++|++++ ..++.-........|..|+.|.|.+ ..+.  +-..+.+     -..|+.|+|+.|..++....     
T Consensus       185 sRlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAk-----N~~L~~lnlsm~sG~t~n~~-----  252 (419)
T KOG2120|consen  185 SRLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAK-----NSNLVRLNLSMCSGFTENAL-----  252 (419)
T ss_pred             hhhHHhhcch-hheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhc-----cccceeeccccccccchhHH-----
Confidence            4588888877 3344322222344677777777776 3444  3333333     35777777777765211110     


Q ss_pred             cccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCc--ccccCCCcEEEecccCCceEe-echhhhhhhc
Q 048809          682 GVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPS--STSFQNLTTVAVDFCYGMINI-LTSSTAKSLV  758 (878)
Q Consensus       682 ~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~l~~L~~L~i~~c~~l~~l-~~~~~~~~l~  758 (878)
                                     +    --+..++.|..|+++.|...+....-  ..--++|+.|+++||.+--.. -.......+|
T Consensus       253 ---------------~----ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp  313 (419)
T KOG2120|consen  253 ---------------Q----LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP  313 (419)
T ss_pred             ---------------H----HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence                           0    12356788999999999865443111  123468999999998743221 1234567899


Q ss_pred             cceEEEEccccccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCC
Q 048809          759 RLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPN  833 (878)
Q Consensus       759 ~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~  833 (878)
                      +|.+|++++|..++.-..           .....|+.|++|.++.|-.+-  |.....+...|+|.+|++.||-.
T Consensus       314 ~l~~LDLSD~v~l~~~~~-----------~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  314 NLVHLDLSDSVMLKNDCF-----------QEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             ceeeeccccccccCchHH-----------HHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccccC
Confidence            999999999998865222           133468999999999998653  21112245689999999999843

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.12  E-value=3.5e-07  Score=101.63  Aligned_cols=87  Identities=22%  Similarity=0.314  Sum_probs=45.0

Q ss_pred             CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEee
Q 048809          247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALR  326 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~  326 (878)
                      .+++|..|++.+|.+.++... +..+.+|++|++++|.|..+ ..+..+..|+.|++++|.++.+..+..+.+|+.++++
T Consensus        93 ~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLS  170 (414)
T ss_pred             cccceeeeeccccchhhcccc-hhhhhcchheeccccccccc-cchhhccchhhheeccCcchhccCCccchhhhcccCC
Confidence            345555555555554444432 24455555555555555544 2344445555555555555555555555555555555


Q ss_pred             CCCcccchH
Q 048809          327 GSDMKELVG  335 (878)
Q Consensus       327 ~~~l~~lp~  335 (878)
                      +|.+..+..
T Consensus       171 ~n~i~~ie~  179 (414)
T KOG0531|consen  171 YNRIVDIEN  179 (414)
T ss_pred             cchhhhhhh
Confidence            555544443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.00  E-value=5.2e-07  Score=103.52  Aligned_cols=70  Identities=23%  Similarity=0.297  Sum_probs=36.4

Q ss_pred             hhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc
Q 048809          565 RGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK  644 (878)
Q Consensus       565 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~  644 (878)
                      ..+++|+.|++++|..+.+.......          ..+++|+.|.+.+|..++..........+++|++|+++.|..++
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~----------~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~  309 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALA----------SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT  309 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHH----------hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence            34455566666655544333222111          12556666666666654443332334456667777777766664

>PLN03150 hypothetical protein; Provisional

Probab=97.93  E-value=1.6e-05  Score=92.71  Aligned_cols=89  Identities=22%  Similarity=0.470  Sum_probs=75.4

Q ss_pred             CccEEEeecCCCC-CCCchhhcCCCCCcEEEeeCCCCC-CCCccccCCCCCcEEEccCCCCC-Cc-ccccCcccCcEEEe
Q 048809          250 QLKYFRIHNDHSL-KIPDNFFTGMTELRVLDFTRMHLL-ALPSSLGLLQNLQTLSLDYCELG-DM-AIIGDLKKLVILAL  325 (878)
Q Consensus       250 ~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~l-~~i~~L~~L~~L~l  325 (878)
                      .++.|++++|.+. .+|.. +.++++|+.|+|++|.+. .+|..++.+++|++|+|++|.++ .+ ..+++|++|++|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            4788999988654 56665 599999999999999996 78999999999999999999987 34 78999999999999


Q ss_pred             eCCCcc-cchHhhcc
Q 048809          326 RGSDMK-ELVGEIGQ  339 (878)
Q Consensus       326 ~~~~l~-~lp~~i~~  339 (878)
                      ++|.++ .+|..++.
T Consensus       498 s~N~l~g~iP~~l~~  512 (623)
T PLN03150        498 NGNSLSGRVPAALGG  512 (623)
T ss_pred             cCCcccccCChHHhh
Confidence            999776 67877764

>PLN03150 hypothetical protein; Provisional

Probab=97.83  E-value=3.5e-05  Score=89.86  Aligned_cols=99  Identities=23%  Similarity=0.414  Sum_probs=83.1

Q ss_pred             CcEEEeeCCCCC-CCCCCC-CCCCccEEEeecCCCC-CCCchhhcCCCCCcEEEeeCCCCC-CCCccccCCCCCcEEEcc
Q 048809          229 CTAISLNNSNIN-ELPQGF-ECPQLKYFRIHNDHSL-KIPDNFFTGMTELRVLDFTRMHLL-ALPSSLGLLQNLQTLSLD  304 (878)
Q Consensus       229 lr~l~l~~~~~~-~l~~~~-~~~~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~  304 (878)
                      ++.|+|+++.+. .+|..+ .+++|++|++++|.+. .+|.. ++.+++|++|+|++|.+. .+|+.++++++|++|+|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            678899998886 466555 8899999999999765 67766 599999999999999997 789999999999999999


Q ss_pred             CCCCC-Cc-ccccC-cccCcEEEeeCC
Q 048809          305 YCELG-DM-AIIGD-LKKLVILALRGS  328 (878)
Q Consensus       305 ~~~l~-~l-~~i~~-L~~L~~L~l~~~  328 (878)
                      +|.++ .+ ..++. +.++..+++.+|
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCC
Confidence            99976 33 55665 357788898887

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.82  E-value=2.9e-05  Score=72.50  Aligned_cols=101  Identities=20%  Similarity=0.231  Sum_probs=74.6

Q ss_pred             CCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC--ccccCCCCCcEEEccC
Q 048809          228 DCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP--SSLGLLQNLQTLSLDY  305 (878)
Q Consensus       228 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~  305 (878)
                      +...+++++|++..++....+++|.+|.+..|++..|.+.+-..+.+|.+|.|.+|+|.++-  ..+..++.|++|.+-+
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            45677888888777777677888888888888888887776666677888888888887653  4456777888888888


Q ss_pred             CCCCCc-----ccccCcccCcEEEeeCC
Q 048809          306 CELGDM-----AIIGDLKKLVILALRGS  328 (878)
Q Consensus       306 ~~l~~l-----~~i~~L~~L~~L~l~~~  328 (878)
                      |.++.-     --+.++++|++||..+-
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehhhh
Confidence            876532     34677888888877653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.78  E-value=2.9e-05  Score=54.72  Aligned_cols=40  Identities=23%  Similarity=0.418  Sum_probs=34.0

Q ss_pred             CCCcEEEccCCCCCCccc-ccCcccCcEEEeeCCCcccchH
Q 048809          296 QNLQTLSLDYCELGDMAI-IGDLKKLVILALRGSDMKELVG  335 (878)
Q Consensus       296 ~~L~~L~L~~~~l~~l~~-i~~L~~L~~L~l~~~~l~~lp~  335 (878)
                      ++||+|++++|.+++++. +++|++|++|++++|.++.++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            579999999999999855 9999999999999999887654

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.76  E-value=6e-06  Score=91.83  Aligned_cols=106  Identities=22%  Similarity=0.347  Sum_probs=92.4

Q ss_pred             ccCCCcEEEeeCCCCCCCCC-CCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEc
Q 048809          225 VLKDCTAISLNNSNINELPQ-GFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSL  303 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L  303 (878)
                      ...++..+++.+|.++.+.. .-.+++|++|++++|.+.++..  +..+..|+.|++++|.|..+. .+..+++|+.+++
T Consensus        93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDL  169 (414)
T ss_pred             cccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhcc-CCccchhhhcccC
Confidence            35678999999999999988 5579999999999999999876  578889999999999998874 4666999999999


Q ss_pred             cCCCCCCccc--ccCcccCcEEEeeCCCcccc
Q 048809          304 DYCELGDMAI--IGDLKKLVILALRGSDMKEL  333 (878)
Q Consensus       304 ~~~~l~~l~~--i~~L~~L~~L~l~~~~l~~l  333 (878)
                      ++|.+..+..  ...+.+|+.+++.+|.+..+
T Consensus       170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  170 SYNRIVDIENDELSELISLEELDLGGNSIREI  201 (414)
T ss_pred             CcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence            9999998866  69999999999999976553

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.67  E-value=1.3e-06  Score=95.78  Aligned_cols=118  Identities=20%  Similarity=0.211  Sum_probs=88.4

Q ss_pred             cCCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccc-cCCCCCcEEEc
Q 048809          226 LKDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSL-GLLQNLQTLSL  303 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~L~L  303 (878)
                      |.++...+++.|.+..+...+ -++.|+.|+|++|...++.  .+..+.+|+.|||++|.+..+|.-= ..+ +|+.|++
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~l  239 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNL  239 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeee
Confidence            455777788888776665555 4688999999999887775  3688999999999999988887432 333 3999999


Q ss_pred             cCCCCCCcccccCcccCcEEEeeCCCcccch--HhhcccccCccc
Q 048809          304 DYCELGDMAIIGDLKKLVILALRGSDMKELV--GEIGQLTQLRLL  346 (878)
Q Consensus       304 ~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L  346 (878)
                      ++|.++.+..+.+|++|+.||+++|-+..-.  .-++.|..|+.|
T Consensus       240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L  284 (1096)
T KOG1859|consen  240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL  284 (1096)
T ss_pred             cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence            9999999989999999999999988443211  125556666665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.63  E-value=1.9e-05  Score=91.60  Aligned_cols=134  Identities=22%  Similarity=0.275  Sum_probs=91.9

Q ss_pred             cCCCcEEEeeCCCCC--CCCCCC--CCCCccEEEeecCCCCCC-CchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcE
Q 048809          226 LKDCTAISLNNSNIN--ELPQGF--ECPQLKYFRIHNDHSLKI-PDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQT  300 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~--~l~~~~--~~~~Lr~L~l~~~~~~~l-~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~  300 (878)
                      ..++++|++++...-  .-+..+  .+|.||+|.+.+-....- ....+.++++|+.||+|+++++.+ .+|++|+|||+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            346788888774421  111112  689999999988632211 124468899999999999999988 88999999999


Q ss_pred             EEccCCCCCC---cccccCcccCcEEEeeCCCcccchHhhcccccCccc-ccccccCCcEEEccCCCCC
Q 048809          301 LSLDYCELGD---MAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL-IAPILSRLEELYIGESPIE  365 (878)
Q Consensus       301 L~L~~~~l~~---l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L-ip~~l~~L~~L~l~~~~~~  365 (878)
                      |.+++=.++.   +..+.+|++|++||+|..+....+.-+.     +++ .+..+++|+.|+.++..+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~-----qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIE-----QYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHH-----HHHHhcccCccccEEecCCcchh
Confidence            9999887663   4788999999999999875444332111     111 1224567777777665443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.39  E-value=4.7e-06  Score=91.62  Aligned_cols=107  Identities=21%  Similarity=0.343  Sum_probs=90.0

Q ss_pred             cccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEc
Q 048809          224 DVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSL  303 (878)
Q Consensus       224 ~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L  303 (878)
                      +..+.+++|+|++|.+.++.....+++|++||++.|++..+|.---..+ +|.+|++++|.++.+ ..|.+|++|+.||+
T Consensus       184 qll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~~LDl  261 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLYGLDL  261 (1096)
T ss_pred             HHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhhccch
Confidence            3466789999999999988855589999999999999888886332344 499999999999887 67999999999999


Q ss_pred             cCCCCC---CcccccCcccCcEEEeeCCCccc
Q 048809          304 DYCELG---DMAIIGDLKKLVILALRGSDMKE  332 (878)
Q Consensus       304 ~~~~l~---~l~~i~~L~~L~~L~l~~~~l~~  332 (878)
                      ++|-+.   .+..++.|..|+.|.|.||.+--
T Consensus       262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            999865   45778899999999999986543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.39  E-value=0.00021  Score=66.91  Aligned_cols=103  Identities=17%  Similarity=0.253  Sum_probs=78.6

Q ss_pred             cEEEeeCCCCCCCCCC-CCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcccc-CCCCCcEEEccCCC
Q 048809          230 TAISLNNSNINELPQG-FECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLG-LLQNLQTLSLDYCE  307 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~-~L~~L~~L~L~~~~  307 (878)
                      |.+++.+..+..+... .-......+|+.+|.+..++.  |.++..|.+|.|++|+|+.+-+.+. -+.+|..|.|.+|+
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            4455555554433321 134567789999998888876  7999999999999999999877775 56789999999999


Q ss_pred             CCCc---ccccCcccCcEEEeeCCCcccch
Q 048809          308 LGDM---AIIGDLKKLVILALRGSDMKELV  334 (878)
Q Consensus       308 l~~l---~~i~~L~~L~~L~l~~~~l~~lp  334 (878)
                      |..+   ..+..+++|++|.+-+|.+...+
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~  129 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKK  129 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhccc
Confidence            7654   66778889999999988766544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.38  E-value=7e-05  Score=86.97  Aligned_cols=52  Identities=23%  Similarity=0.484  Sum_probs=25.9

Q ss_pred             CCCCCcEEEccCCCCC--Cc-ccccCcccCcEEEeeCCCcccchHhhcccccCccc
Q 048809          294 LLQNLQTLSLDYCELG--DM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL  346 (878)
Q Consensus       294 ~L~~L~~L~L~~~~l~--~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L  346 (878)
                      .|++||.|.+++-.+.  +. .-..++++|..||+++++++.+ .++++|++|++|
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            3455555555554422  12 3334455555555555555554 445555555555

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.32  E-value=1.7e-05  Score=69.09  Aligned_cols=90  Identities=19%  Similarity=0.299  Sum_probs=55.8

Q ss_pred             CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCC-CcccccCcccCcEEEe
Q 048809          247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELG-DMAIIGDLKKLVILAL  325 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~-~l~~i~~L~~L~~L~l  325 (878)
                      ...+|...++++|...++|+.+-.+++.+..|+|++|.|..+|..+..++.||.|+++.|.+. .+.-+..|.+|-.|+.
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence            344556666666666666666555555666666666666666666666666666666666644 3355555666666666


Q ss_pred             eCCCcccchHh
Q 048809          326 RGSDMKELVGE  336 (878)
Q Consensus       326 ~~~~l~~lp~~  336 (878)
                      .++....+|-+
T Consensus       131 ~~na~~eid~d  141 (177)
T KOG4579|consen  131 PENARAEIDVD  141 (177)
T ss_pred             CCCccccCcHH
Confidence            66655555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.00015  Score=71.84  Aligned_cols=101  Identities=20%  Similarity=0.237  Sum_probs=67.1

Q ss_pred             EEEeeCCCCCCCCCCC----CCCCccEEEeecCCCCCCC--chhhcCCCCCcEEEeeCCCCCCCCccc-cCCCCCcEEEc
Q 048809          231 AISLNNSNINELPQGF----ECPQLKYFRIHNDHSLKIP--DNFFTGMTELRVLDFTRMHLLALPSSL-GLLQNLQTLSL  303 (878)
Q Consensus       231 ~l~l~~~~~~~l~~~~----~~~~Lr~L~l~~~~~~~l~--~~~~~~l~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~L~L  303 (878)
                      -+.+.++.|.......    .+.+++.|++.+|.+..-.  ..++.++++|++|+|+.|.+..--.+. -.+++|++|.|
T Consensus        49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL  128 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL  128 (418)
T ss_pred             hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence            4445555555443322    5678888888888554322  245678888999999988765433333 35678899999


Q ss_pred             cCCCCC--Cc-ccccCcccCcEEEeeCCCcc
Q 048809          304 DYCELG--DM-AIIGDLKKLVILALRGSDMK  331 (878)
Q Consensus       304 ~~~~l~--~l-~~i~~L~~L~~L~l~~~~l~  331 (878)
                      .++++.  .. +.+..++.++.|.++.|++.
T Consensus       129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             cCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence            888865  34 66777888888887777443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.23  E-value=7.7e-05  Score=73.75  Aligned_cols=60  Identities=28%  Similarity=0.370  Sum_probs=36.1

Q ss_pred             cCCCCCcEEEeeCCCCCC---CCccccCCCCCcEEEccCCCCCCc-ccc-cCcccCcEEEeeCCC
Q 048809          270 TGMTELRVLDFTRMHLLA---LPSSLGLLQNLQTLSLDYCELGDM-AII-GDLKKLVILALRGSD  329 (878)
Q Consensus       270 ~~l~~Lr~L~Ls~~~i~~---lp~~i~~L~~L~~L~L~~~~l~~l-~~i-~~L~~L~~L~l~~~~  329 (878)
                      ..+.+++.|||.+|.|+.   +-.-+.++++|++|+|+.|.+..+ .++ -.+.+|++|-|.|+.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~  132 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG  132 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC
Confidence            455667777777776643   222235667777777777765543 444 355666666666653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.17  E-value=4.1e-05  Score=66.80  Aligned_cols=82  Identities=23%  Similarity=0.385  Sum_probs=75.0

Q ss_pred             CcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCC
Q 048809          229 CTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYC  306 (878)
Q Consensus       229 lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~  306 (878)
                      +..+++++|.++++|+.+  +++.+++|++.+|.+.++|.+ |..++.||-|+++.|.+...|+-|..|.+|-+|+..++
T Consensus        55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen   55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence            566889999999999877  677999999999999999999 69999999999999999999999999999999999999


Q ss_pred             CCCCc
Q 048809          307 ELGDM  311 (878)
Q Consensus       307 ~l~~l  311 (878)
                      .+..+
T Consensus       134 a~~ei  138 (177)
T KOG4579|consen  134 ARAEI  138 (177)
T ss_pred             ccccC
Confidence            86654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.09  E-value=0.00014  Score=73.82  Aligned_cols=108  Identities=17%  Similarity=0.244  Sum_probs=66.9

Q ss_pred             cCCCcEEEeeCCCCCC-----CCCCC-CCCCccEEEeecCCCC----CCCch------hhcCCCCCcEEEeeCCCCC-CC
Q 048809          226 LKDCTAISLNNSNINE-----LPQGF-ECPQLKYFRIHNDHSL----KIPDN------FFTGMTELRVLDFTRMHLL-AL  288 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~-----l~~~~-~~~~Lr~L~l~~~~~~----~l~~~------~~~~l~~Lr~L~Ls~~~i~-~l  288 (878)
                      ...++.+++++|.+..     +.+.+ +.++||.-++++-..+    ++|+.      .+-.+++|++||||+|.+. .-
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            4467788888887642     22222 4557777777765222    33322      2345668888888888762 22


Q ss_pred             C----ccccCCCCCcEEEccCCCCCCc---------------ccccCcccCcEEEeeCCCcccc
Q 048809          289 P----SSLGLLQNLQTLSLDYCELGDM---------------AIIGDLKKLVILALRGSDMKEL  333 (878)
Q Consensus       289 p----~~i~~L~~L~~L~L~~~~l~~l---------------~~i~~L~~L~~L~l~~~~l~~l  333 (878)
                      +    +-|.+++.|++|.|.+|.+...               .-+++=.+|+++...+|++..-
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence            2    3356788888888888876532               1234556788888888766543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.07  E-value=0.00016  Score=73.47  Aligned_cols=106  Identities=18%  Similarity=0.237  Sum_probs=61.2

Q ss_pred             cCCCcEEEeeCCCCCCCCCCC------CCCCccEEEeecCCCCC----CCchhhcCCCCCcEEEeeCCCCC-----CCCc
Q 048809          226 LKDCTAISLNNSNINELPQGF------ECPQLKYFRIHNDHSLK----IPDNFFTGMTELRVLDFTRMHLL-----ALPS  290 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~------~~~~Lr~L~l~~~~~~~----l~~~~~~~l~~Lr~L~Ls~~~i~-----~lp~  290 (878)
                      ..++|.+....|.+..-+...      ..+.|..+.+..|.+..    +-...|.+++||++|||.+|-++     .+-.
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            456777877777766544322      34667777777663321    11223567777777777777663     2445


Q ss_pred             cccCCCCCcEEEccCCCCCCc------ccc-cCcccCcEEEeeCCCcc
Q 048809          291 SLGLLQNLQTLSLDYCELGDM------AII-GDLKKLVILALRGSDMK  331 (878)
Q Consensus       291 ~i~~L~~L~~L~L~~~~l~~l------~~i-~~L~~L~~L~l~~~~l~  331 (878)
                      .++.+++||.|++++|.++.=      ..+ ...++|++|++.+|.++
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            556666777777777765521      111 22456666666666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.75  E-value=0.0006  Score=66.97  Aligned_cols=64  Identities=20%  Similarity=0.302  Sum_probs=37.3

Q ss_pred             hcCCCCCcEEEeeCC--CCC-CCCccccCCCCCcEEEccCCCCCCc---ccccCcccCcEEEeeCCCccc
Q 048809          269 FTGMTELRVLDFTRM--HLL-ALPSSLGLLQNLQTLSLDYCELGDM---AIIGDLKKLVILALRGSDMKE  332 (878)
Q Consensus       269 ~~~l~~Lr~L~Ls~~--~i~-~lp~~i~~L~~L~~L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~  332 (878)
                      |..+++|+.|+++.|  ++. .++.....+++|++|++++|+++.+   ..+.++.+|..|++.+|..++
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence            355566666666666  332 3444444556677777777665533   445566666677777664444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.45  E-value=0.00045  Score=67.59  Aligned_cols=138  Identities=23%  Similarity=0.286  Sum_probs=78.4

Q ss_pred             cCCCCCcEEEeeCCCC----CCCC-------ccccCCCCCcEEEccCCCCC--Cc----ccccCcccCcEEEeeCCCccc
Q 048809          270 TGMTELRVLDFTRMHL----LALP-------SSLGLLQNLQTLSLDYCELG--DM----AIIGDLKKLVILALRGSDMKE  332 (878)
Q Consensus       270 ~~l~~Lr~L~Ls~~~i----~~lp-------~~i~~L~~L~~L~L~~~~l~--~l----~~i~~L~~L~~L~l~~~~l~~  332 (878)
                      .+-++||+.+++.-..    .++|       +.+-+|++|+..+|+.|-+.  .+    .-|++-+.|.||.+++|.+..
T Consensus        55 a~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp  134 (388)
T COG5238          55 ANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP  134 (388)
T ss_pred             hhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence            4455666666554321    1222       33456777888888777543  22    456777888888888886654


Q ss_pred             chHh-hcccccCccc-c---cccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCcc-
Q 048809          333 LVGE-IGQLTQLRLL-I---APILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRD-  406 (878)
Q Consensus       333 lp~~-i~~L~~L~~L-i---p~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~-  406 (878)
                      +..+ |++  .|+|| .   ...-+.|+......|++.-        .........+....+|+.+.+..|.+.  |.. 
T Consensus       135 ~aG~rigk--al~~la~nKKaa~kp~Le~vicgrNRlen--------gs~~~~a~~l~sh~~lk~vki~qNgIr--pegv  202 (388)
T COG5238         135 IAGGRIGK--ALFHLAYNKKAADKPKLEVVICGRNRLEN--------GSKELSAALLESHENLKEVKIQQNGIR--PEGV  202 (388)
T ss_pred             cchhHHHH--HHHHHHHHhhhccCCCceEEEeccchhcc--------CcHHHHHHHHHhhcCceeEEeeecCcC--cchh
Confidence            3332 432  34444 1   1155678887777776541        111223344555678888888877765  332 


Q ss_pred             -------hhcccCCceEEEE
Q 048809          407 -------LSFFKMLQRYRIL  419 (878)
Q Consensus       407 -------~~~l~~L~~L~l~  419 (878)
                             ++...+|+.|++.
T Consensus       203 ~~L~~~gl~y~~~LevLDlq  222 (388)
T COG5238         203 TMLAFLGLFYSHSLEVLDLQ  222 (388)
T ss_pred             HHHHHHHHHHhCcceeeecc
Confidence                   1245666666664

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.43  E-value=0.0015  Score=64.16  Aligned_cols=102  Identities=20%  Similarity=0.229  Sum_probs=74.5

Q ss_pred             cCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecC--CC-CCCCchhhcCCCCCcEEEeeCCCCCCC--CccccCCCCCcE
Q 048809          226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHND--HS-LKIPDNFFTGMTELRVLDFTRMHLLAL--PSSLGLLQNLQT  300 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~--~~-~~l~~~~~~~l~~Lr~L~Ls~~~i~~l--p~~i~~L~~L~~  300 (878)
                      ...+.++++.+..++.+.....+++|++|.++.|  +. ..++-- ..++++|++|++++|+|..+  -+.+..+.||..
T Consensus        42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            4456777777777777777778999999999999  32 223322 36779999999999998642  133567888999


Q ss_pred             EEccCCCCCCc-----ccccCcccCcEEEeeCC
Q 048809          301 LSLDYCELGDM-----AIIGDLKKLVILALRGS  328 (878)
Q Consensus       301 L~L~~~~l~~l-----~~i~~L~~L~~L~l~~~  328 (878)
                      |++.+|..+.+     ..+.-+++|.+||-...
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            99999986544     34566777877775544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.97  E-value=0.00079  Score=63.34  Aligned_cols=65  Identities=20%  Similarity=0.369  Sum_probs=49.3

Q ss_pred             cccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccc
Q 048809          602 ELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDY  670 (878)
Q Consensus       602 ~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~  670 (878)
                      .+++++.|.+.+|..+.+++.+......++|+.|+|++|++++ .-...+..    +++|+.|.|.+-+.
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~----lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK----LKNLRRLHLYDLPY  188 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH----hhhhHHHHhcCchh
Confidence            3788888888899888888776555578899999999999888 33333333    78888888877665

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.89  E-value=0.07  Score=66.54  Aligned_cols=171  Identities=15%  Similarity=0.168  Sum_probs=106.9

Q ss_pred             CcEEEEEeCChHH---hhccCCCCccEEcC----CCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHH
Q 048809            3 GCKVLLTARSHDV---LSSKMDCQKNIFVD----VLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVA   75 (878)
Q Consensus         3 gs~iivTtR~~~v---~~~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g   75 (878)
                      +-++|||||..--   +.. .......++.    +|+.+|+.++|....|...    -.+...+|.+.|+|.|+++..++
T Consensus       152 ~~~lv~~sR~~~~~~~~~l-~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~  226 (903)
T PRK04841        152 NLTLVVLSRNLPPLGIANL-RVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIA  226 (903)
T ss_pred             CeEEEEEeCCCCCCchHhH-HhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHH
Confidence            4578899997421   110 0112244555    9999999999998776422    23456789999999999999999


Q ss_pred             HHHhcCCChHHHHHHHHHHHccCcchhhhhhhh-hcccccCCCCCChHHHHHHHhhhcccCCccHHHHHHHHhhccCccC
Q 048809           76 KALKNKSSLYVWKDALRQLKNKSLLGAAYSSLE-LSYYHLEDEDLGGEELRKTFLLIGYSYIRNVKDLLYHGMGLGLFQN  154 (878)
Q Consensus        76 ~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~l~-~sy~~L~~~~~~~~~~k~cf~~~~~fp~~~~~~li~~w~~~g~i~~  154 (878)
                      ..++......  ......+... ....+...+. --++.||+      +.++.+...|+++.+.. ++...-.  |    
T Consensus       227 ~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~l~~~v~~~l~~------~~~~~l~~~a~~~~~~~-~l~~~l~--~----  290 (903)
T PRK04841        227 LSARQNNSSL--HDSARRLAGI-NASHLSDYLVEEVLDNVDL------ETRHFLLRCSVLRSMND-ALIVRVT--G----  290 (903)
T ss_pred             HHHhhCCCch--hhhhHhhcCC-CchhHHHHHHHHHHhcCCH------HHHHHHHHhcccccCCH-HHHHHHc--C----
Confidence            8876542211  1111111110 1113444432 23789999      99999999999984443 3332211  1    


Q ss_pred             CCcHHHHHHHHHHHHHHHHhcccccc-c-cCCcceehhHHHHHHHHHHH
Q 048809          155 INTVDEARDRAHTLVDKLKNSCLLLG-G-WRSEWFSMHDVVRDVAISIA  201 (878)
Q Consensus       155 ~~~~~~~~~~~~~~l~~L~~~~l~~~-~-~~~~~~~mhdli~~~~~~~~  201 (878)
                         ..+..    +.+.+|.+.+++.. . ++...|++|++++++.....
T Consensus       291 ---~~~~~----~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l  332 (903)
T PRK04841        291 ---EENGQ----MRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC  332 (903)
T ss_pred             ---CCcHH----HHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence               11122    37888999998653 3 23347899999999988765

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.81  E-value=0.003  Score=36.90  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=15.4

Q ss_pred             CCcEEEeeCCCCCCCCccccCC
Q 048809          274 ELRVLDFTRMHLLALPSSLGLL  295 (878)
Q Consensus       274 ~Lr~L~Ls~~~i~~lp~~i~~L  295 (878)
                      +|++||+++|.++.+|.+|++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            4677888888777777766543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.79  E-value=0.0013  Score=61.90  Aligned_cols=87  Identities=11%  Similarity=0.181  Sum_probs=42.7

Q ss_pred             ccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEcccccccccccccccccccccccc
Q 048809          710 LEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANY  789 (878)
Q Consensus       710 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~  789 (878)
                      ++.++-+++.....-...+..+++++.|.+.+|..+.+.....+.+-.++|+.|+|++|+.+|+---           ..
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-----------~~  171 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-----------AC  171 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-----------HH
Confidence            3444444444333333334455555555566665555544333444445666666666666554421           12


Q ss_pred             ccccccchhhccccCccc
Q 048809          790 EIVFSELKELRLSSLESL  807 (878)
Q Consensus       790 ~~~~~~L~~L~l~~c~~L  807 (878)
                      +..+++|+.|.|.+.+..
T Consensus       172 L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  172 LLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             HHHhhhhHHHHhcCchhh
Confidence            233555666665555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.22  E-value=0.0077  Score=35.16  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=15.4

Q ss_pred             cCcEEEeeCCCcccchHhhccc
Q 048809          319 KLVILALRGSDMKELVGEIGQL  340 (878)
Q Consensus       319 ~L~~L~l~~~~l~~lp~~i~~L  340 (878)
                      +|++||+++|.++.+|.+|++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            4677788888777777766553

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.18  E-value=0.0015  Score=64.29  Aligned_cols=76  Identities=20%  Similarity=0.180  Sum_probs=49.8

Q ss_pred             CccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCc---ccccCcccCcEEEee
Q 048809          250 QLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM---AIIGDLKKLVILALR  326 (878)
Q Consensus       250 ~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l---~~i~~L~~L~~L~l~  326 (878)
                      +.+.|++.|+.+..|  .+..+++.|.||.||-|.|+.+ ..+..|++|+.|.|+.|.|.++   .-+.+|++|+.|-|.
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            444455555544444  2356777778888887777776 4566777777777777777765   345566667777666


Q ss_pred             CC
Q 048809          327 GS  328 (878)
Q Consensus       327 ~~  328 (878)
                      .|
T Consensus        97 EN   98 (388)
T KOG2123|consen   97 EN   98 (388)
T ss_pred             cC
Confidence            65

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.53  E-value=0.0027  Score=62.54  Aligned_cols=107  Identities=21%  Similarity=0.242  Sum_probs=70.8

Q ss_pred             CCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCccccccc
Q 048809          271 GMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPI  350 (878)
Q Consensus       271 ~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~  350 (878)
                      .+.+.+-|+..||.+..+. -+.+++.|++|.|+-|+|+.+..+..+++|+.|+|+.|.|..+.. +..|.        +
T Consensus        17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldE-L~YLk--------n   86 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDE-LEYLK--------N   86 (388)
T ss_pred             HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHH-HHHHh--------c
Confidence            4566778899999887651 234788899999999999999999999999999999987776543 22222        3


Q ss_pred             ccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEE
Q 048809          351 LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLE  394 (878)
Q Consensus       351 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~  394 (878)
                      +++|+.|.+..|.-..       .........-|.-+++|++|+
T Consensus        87 lpsLr~LWL~ENPCc~-------~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   87 LPSLRTLWLDENPCCG-------EAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CchhhhHhhccCCccc-------ccchhHHHHHHHHcccchhcc
Confidence            3445555665553220       111122234455667777765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.48  E-value=0.03  Score=55.30  Aligned_cols=162  Identities=17%  Similarity=0.200  Sum_probs=93.0

Q ss_pred             cCCCcEEEeeCCCCCC-----CCCCC-CCCCccEEEeecCCCCCCCch----------hhcCCCCCcEEEeeCCCCC-CC
Q 048809          226 LKDCTAISLNNSNINE-----LPQGF-ECPQLKYFRIHNDHSLKIPDN----------FFTGMTELRVLDFTRMHLL-AL  288 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~-----l~~~~-~~~~Lr~L~l~~~~~~~l~~~----------~~~~l~~Lr~L~Ls~~~i~-~l  288 (878)
                      +..+..+++++|.|..     +...+ +-.+||.-+++.-..+..-+.          .+-+|++|+..+||.|.+. ..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            4457778888887653     22222 456777777776533332221          2467889999999999773 44


Q ss_pred             C----ccccCCCCCcEEEccCCCCCCc--cccc-------------CcccCcEEEeeCCCcccchHhhcccccCcccccc
Q 048809          289 P----SSLGLLQNLQTLSLDYCELGDM--AIIG-------------DLKKLVILALRGSDMKELVGEIGQLTQLRLLIAP  349 (878)
Q Consensus       289 p----~~i~~L~~L~~L~L~~~~l~~l--~~i~-------------~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~  349 (878)
                      |    +-|+.-++|.+|.+++|.+..+  .-|+             +=+.|++.+...|++..-|.......     +..
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~-----l~s  183 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAAL-----LES  183 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHH-----HHh
Confidence            4    3457778899999999986543  2232             34567777777776655444321110     000


Q ss_pred             cccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCC
Q 048809          350 ILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDE  400 (878)
Q Consensus       350 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~  400 (878)
                      . .+|+++.+..|.+....+       ..-....+..+.+|+.|++..|..
T Consensus       184 h-~~lk~vki~qNgIrpegv-------~~L~~~gl~y~~~LevLDlqDNtf  226 (388)
T COG5238         184 H-ENLKEVKIQQNGIRPEGV-------TMLAFLGLFYSHSLEVLDLQDNTF  226 (388)
T ss_pred             h-cCceeEEeeecCcCcchh-------HHHHHHHHHHhCcceeeeccccch
Confidence            1 245566666665541100       011233455667777888776643

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.54  E-value=0.17  Score=45.80  Aligned_cols=101  Identities=17%  Similarity=0.362  Sum_probs=44.8

Q ss_pred             CCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEcc
Q 048809          228 DCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLD  304 (878)
Q Consensus       228 ~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~  304 (878)
                      +++.+.+.. .+..++...  .+++|+.+.+.++ +..++...|.++..|+.+.+.+ .+..++ ..+..+.+|+.+++.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence            355555543 445554443  4556777776553 5666666667776677777754 444443 334556677777765


Q ss_pred             CCCCCCc--ccccCcccCcEEEeeCCCcccch
Q 048809          305 YCELGDM--AIIGDLKKLVILALRGSDMKELV  334 (878)
Q Consensus       305 ~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp  334 (878)
                      .+ +..+  ..+.+. +|+.+.+.. .+..++
T Consensus        90 ~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~  118 (129)
T PF13306_consen   90 SN-ITEIGSSSFSNC-NLKEINIPS-NITKIE  118 (129)
T ss_dssp             TT--BEEHTTTTTT--T--EEE-TT-B-SS--
T ss_pred             cc-ccEEchhhhcCC-CceEEEECC-CccEEC
Confidence            43 4433  445555 666666554 333443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.41  E-value=0.049  Score=29.42  Aligned_cols=16  Identities=44%  Similarity=0.748  Sum_probs=6.9

Q ss_pred             CCcEEEeeCCCCCCCC
Q 048809          274 ELRVLDFTRMHLLALP  289 (878)
Q Consensus       274 ~Lr~L~Ls~~~i~~lp  289 (878)
                      +||+|++++|+++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4556666666555544

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.21  E-value=0.13  Score=46.55  Aligned_cols=95  Identities=17%  Similarity=0.354  Sum_probs=56.6

Q ss_pred             CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCCCc--ccccCcccCcEE
Q 048809          247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVIL  323 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L  323 (878)
                      .+.+|+.+.+.. .+..++...|..+.+|+.+++.++ +..++ ..+.++.+|+.+.+.. .+..+  ..+..+.+|+.+
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            567888888875 577788888999999999999875 77765 4467887899999976 44433  567778899999


Q ss_pred             EeeCCCcccchHh-hcccccCccc
Q 048809          324 ALRGSDMKELVGE-IGQLTQLRLL  346 (878)
Q Consensus       324 ~l~~~~l~~lp~~-i~~L~~L~~L  346 (878)
                      ++..+ +..++.. +.+. +|+.+
T Consensus        87 ~~~~~-~~~i~~~~f~~~-~l~~i  108 (129)
T PF13306_consen   87 DIPSN-ITEIGSSSFSNC-NLKEI  108 (129)
T ss_dssp             EETTT--BEEHTTTTTT--T--EE
T ss_pred             ccCcc-ccEEchhhhcCC-CceEE
Confidence            98664 5555543 4443 44433

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=92.37  E-value=0.43  Score=50.73  Aligned_cols=148  Identities=16%  Similarity=0.033  Sum_probs=86.5

Q ss_pred             CcEEEEEeCChHHhhcc-CCCCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHhc-
Q 048809            3 GCKVLLTARSHDVLSSK-MDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALKN-   80 (878)
Q Consensus         3 gs~iivTtR~~~v~~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~~-   80 (878)
                      .+-|.+|||...+.... -.....+++++++.+|..+++.+.++.... .--.+....|++.|+|.|-.+..++..+.. 
T Consensus       130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~  208 (305)
T TIGR00635       130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRVRDF  208 (305)
T ss_pred             eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence            34466677765443320 112356899999999999999998842111 112456788999999999766555543211 


Q ss_pred             -----C--CChHHHHHHHHHHHccCcchhhhhhhhhcccccCCCCCChHHHHHHHh-hhcccCC--ccHHHHHHHHhhcc
Q 048809           81 -----K--SSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFL-LIGYSYI--RNVKDLLYHGMGLG  150 (878)
Q Consensus        81 -----~--~~~~~w~~~l~~l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~-~~~~fp~--~~~~~li~~w~~~g  150 (878)
                           .  .+.+..+             .+...+..+|..++.      +.+..+. ..+.+.+  ..++++....    
T Consensus       209 a~~~~~~~it~~~v~-------------~~l~~l~~~~~~l~~------~~~~~L~al~~~~~~~~~~~~~ia~~l----  265 (305)
T TIGR00635       209 AQVRGQKIINRDIAL-------------KALEMLMIDELGLDE------IDRKLLSVLIEQFQGGPVGLKTLAAAL----  265 (305)
T ss_pred             HHHcCCCCcCHHHHH-------------HHHHHhCCCCCCCCH------HHHHHHHHHHHHhCCCcccHHHHHHHh----
Confidence                 0  0111111             223335667888888      7777665 5566662  3444444432    


Q ss_pred             CccCCCcHHHHHHHHHHHHH-HHHhcccccccc
Q 048809          151 LFQNINTVDEARDRAHTLVD-KLKNSCLLLGGW  182 (878)
Q Consensus       151 ~i~~~~~~~~~~~~~~~~l~-~L~~~~l~~~~~  182 (878)
                          +.+...++.    .++ .|++++|++..+
T Consensus       266 ----g~~~~~~~~----~~e~~Li~~~li~~~~  290 (305)
T TIGR00635       266 ----GEDADTIED----VYEPYLLQIGFLQRTP  290 (305)
T ss_pred             ----CCCcchHHH----hhhHHHHHcCCcccCC
Confidence                122233333    456 599999997553

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.28  E-value=0.09  Score=28.37  Aligned_cols=16  Identities=25%  Similarity=0.335  Sum_probs=6.4

Q ss_pred             cCcEEEeeCCCcccch
Q 048809          319 KLVILALRGSDMKELV  334 (878)
Q Consensus       319 ~L~~L~l~~~~l~~lp  334 (878)
                      +|+.|++++|.++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555444

...

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=92.19  E-value=0.47  Score=50.93  Aligned_cols=152  Identities=13%  Similarity=-0.019  Sum_probs=85.7

Q ss_pred             cEEEEEeCChHHhhcc-CCCCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHhcCC
Q 048809            4 CKVLLTARSHDVLSSK-MDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALKNKS   82 (878)
Q Consensus         4 s~iivTtR~~~v~~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~~~~   82 (878)
                      +-|.+|||...+.... -.....++++++++++..+++.+.++... -.--.+....|++.|+|.|-.+..+...+.   
T Consensus       152 ~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~---  227 (328)
T PRK00080        152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG-VEIDEEGALEIARRSRGTPRIANRLLRRVR---  227 (328)
T ss_pred             eEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHcCCCchHHHHHHHHHH---
Confidence            4466777754443310 01234689999999999999999984211 112235788999999999954444443321   


Q ss_pred             ChHHHHHHHHHHHccCcch---hhhhhhhhcccccCCCCCChHHHHHHHh-hhcccC-C-ccHHHHHHHHhhccCccCCC
Q 048809           83 SLYVWKDALRQLKNKSLLG---AAYSSLELSYYHLEDEDLGGEELRKTFL-LIGYSY-I-RNVKDLLYHGMGLGLFQNIN  156 (878)
Q Consensus        83 ~~~~w~~~l~~l~~~~~~~---~~~~~l~~sy~~L~~~~~~~~~~k~cf~-~~~~fp-~-~~~~~li~~w~~~g~i~~~~  156 (878)
                         .|..+..  ......+   .....+...|..|++      ..+..+. ....|+ + ..++.+....        +.
T Consensus       228 ---~~a~~~~--~~~I~~~~v~~~l~~~~~~~~~l~~------~~~~~l~~~~~~~~~~~~~~~~~a~~l--------g~  288 (328)
T PRK00080        228 ---DFAQVKG--DGVITKEIADKALDMLGVDELGLDE------MDRKYLRTIIEKFGGGPVGLDTLAAAL--------GE  288 (328)
T ss_pred             ---HHHHHcC--CCCCCHHHHHHHHHHhCCCcCCCCH------HHHHHHHHHHHHcCCCceeHHHHHHHH--------CC
Confidence               1211110  0001111   344556778888888      6677665 666777 3 3334443332        11


Q ss_pred             cHHHHHHHHHHHHH-HHHhcccccccc
Q 048809          157 TVDEARDRAHTLVD-KLKNSCLLLGGW  182 (878)
Q Consensus       157 ~~~~~~~~~~~~l~-~L~~~~l~~~~~  182 (878)
                      +...+++    .++ .|++.+|++..+
T Consensus       289 ~~~~~~~----~~e~~Li~~~li~~~~  311 (328)
T PRK00080        289 ERDTIED----VYEPYLIQQGFIQRTP  311 (328)
T ss_pred             CcchHHH----HhhHHHHHcCCcccCC
Confidence            2223332    344 688899997553

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.91  E-value=0.014  Score=56.21  Aligned_cols=82  Identities=10%  Similarity=0.099  Sum_probs=53.6

Q ss_pred             CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCC-cccccCcccCcEEEe
Q 048809          247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGD-MAIIGDLKKLVILAL  325 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-l~~i~~L~~L~~L~l  325 (878)
                      ..+..+.||++.|+...+... |+.+..|..||++.|.|..+|..++.+..++.+++..|..+. |.+++++++++++++
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            345566666666655555544 366666677777777777777777777777777776666553 466777777777777


Q ss_pred             eCCC
Q 048809          326 RGSD  329 (878)
Q Consensus       326 ~~~~  329 (878)
                      .++.
T Consensus       119 k~~~  122 (326)
T KOG0473|consen  119 KKTE  122 (326)
T ss_pred             ccCc
Confidence            6664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.10  E-value=0.011  Score=56.72  Aligned_cols=85  Identities=15%  Similarity=0.150  Sum_probs=73.4

Q ss_pred             CCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCc-ccccCcccCcEEEeeCCCcccchHhhccc
Q 048809          262 LKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQL  340 (878)
Q Consensus       262 ~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L  340 (878)
                      ..+|-.-+..++...+||++.|+...+-..++.++.|..|+++.+.+..+ .+++.+..++++++..|..+..|.+++++
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~  110 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKE  110 (326)
T ss_pred             cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccccc
Confidence            34453334778899999999999988888899999999999999998866 88999999999999999999999999998


Q ss_pred             ccCccc
Q 048809          341 TQLRLL  346 (878)
Q Consensus       341 ~~L~~L  346 (878)
                      ++++.+
T Consensus       111 ~~~k~~  116 (326)
T KOG0473|consen  111 PHPKKN  116 (326)
T ss_pred             CCcchh
Confidence            888776

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.54  E-value=0.41  Score=29.15  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=13.9

Q ss_pred             CCCCcEEEeeCCCCCCCCccc
Q 048809          272 MTELRVLDFTRMHLLALPSSL  292 (878)
Q Consensus       272 l~~Lr~L~Ls~~~i~~lp~~i  292 (878)
                      +.+|++|+|++|.|+.+|+.+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356677777777777776543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.54  E-value=0.41  Score=29.15  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=13.9

Q ss_pred             CCCCcEEEeeCCCCCCCCccc
Q 048809          272 MTELRVLDFTRMHLLALPSSL  292 (878)
Q Consensus       272 l~~Lr~L~Ls~~~i~~lp~~i  292 (878)
                      +.+|++|+|++|.|+.+|+.+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356677777777777776543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.40  E-value=0.61  Score=28.35  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=19.1

Q ss_pred             CCCccEEEeecCCCCCCCchhhc
Q 048809          248 CPQLKYFRIHNDHSLKIPDNFFT  270 (878)
Q Consensus       248 ~~~Lr~L~l~~~~~~~l~~~~~~  270 (878)
                      +++|++|++.+|.+..+|.++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788999999999999988765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.40  E-value=0.61  Score=28.35  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=19.1

Q ss_pred             CCCccEEEeecCCCCCCCchhhc
Q 048809          248 CPQLKYFRIHNDHSLKIPDNFFT  270 (878)
Q Consensus       248 ~~~Lr~L~l~~~~~~~l~~~~~~  270 (878)
                      +++|++|++.+|.+..+|.++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788999999999999988765

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=83.15  E-value=0.69  Score=28.17  Aligned_cols=16  Identities=31%  Similarity=0.731  Sum_probs=11.9

Q ss_pred             cCCcceEEEcCCCCcc
Q 048809          820 FPSLERLVVEDCPNMS  835 (878)
Q Consensus       820 l~sL~~L~i~~C~~L~  835 (878)
                      +|+|++|++++|++++
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            4677888888887765

>COG3903 Predicted ATPase [General function prediction only]

Probab=82.67  E-value=3.5  Score=44.11  Aligned_cols=180  Identities=18%  Similarity=0.103  Sum_probs=112.9

Q ss_pred             EEEEEeCChHHhhccCCCCccEEcCCCChH-HHHHHHHHHhC----CCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHh
Q 048809            5 KVLLTARSHDVLSSKMDCQKNIFVDVLNAK-EAWSLFEKMTG----DCIENGELKSVATEIVKECAGLPIAILPVAKALK   79 (878)
Q Consensus         5 ~iivTtR~~~v~~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~   79 (878)
                      .|+.|+|..-.    +..+..+.+.+|+.. ++.++|...|.    .-.....-...+.+|.++..|.|+||...++..+
T Consensus       119 ~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~  194 (414)
T COG3903         119 AILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVR  194 (414)
T ss_pred             hhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            35666664433    445667888888755 79999998872    2233345567899999999999999999999988


Q ss_pred             cCCChHHHHHHHHH----HHccC-----cchhhhhhhhhcccccCCCCCChHHHHHHHhhhcccC-CccHHHHHHHHhhc
Q 048809           80 NKSSLYVWKDALRQ----LKNKS-----LLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSY-IRNVKDLLYHGMGL  149 (878)
Q Consensus        80 ~~~~~~~w~~~l~~----l~~~~-----~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp-~~~~~~li~~w~~~  149 (878)
                      .-. ..+--+-++.    +....     ........+.+||.-|..      -.+--|.-++.|. ++.-+  ...|.+-
T Consensus       195 sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg------we~~~~~rLa~~~g~f~~~--l~~~~a~  265 (414)
T COG3903         195 SLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG------WERALFGRLAVFVGGFDLG--LALAVAA  265 (414)
T ss_pred             hcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh------HHHHHhcchhhhhhhhccc--HHHHHhc
Confidence            763 2222222221    11110     012667889999999998      7888899999998 55543  3345444


Q ss_pred             cCccCCCcHHHHHHHHHHHHHHHHhccccccc--cCCcceehhHHHHHHHHHHHc
Q 048809          150 GLFQNINTVDEARDRAHTLVDKLKNSCLLLGG--WRSEWFSMHDVVRDVAISIAS  202 (878)
Q Consensus       150 g~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~~--~~~~~~~mhdli~~~~~~~~~  202 (878)
                      |--    ..++.+..| +-+..+++++++...  ...-.++.-+.+|.++.....
T Consensus       266 g~~----~~~~~y~~~-~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~  315 (414)
T COG3903         266 GAD----VDVPRYLVL-LALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELH  315 (414)
T ss_pred             CCc----cccchHHHH-HHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            421    011222222 345567888887543  223346666667777665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	878
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	7e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	3e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-04
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-04

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 99.7 bits (248), Expect = 7e-22
 Identities = 31/217 (14%), Positives = 66/217 (30%), Gaps = 25/217 (11%)

Query: 3   GCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVK 62
             + L+T R  ++ ++     + I V  L   E +   E          + + V  + ++
Sbjct: 265 RLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIE 324

Query: 63  ECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSS----------LELSYY 112
             +G P  ++   K+ + K+          +L+++ L+G    +          L+    
Sbjct: 325 LSSGNPATLMMFFKSCEPKTFEK-MAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVE 383

Query: 113 HLEDEDLGGEELRKTFLLIG---YSYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLV 169
            L D      E R                VK          +    N  ++  D     +
Sbjct: 384 VLSD------EDRSALAFAVVMPPGVDIPVKLWSCVIP---VDICSNEEEQLDDEVADRL 434

Query: 170 DKLKNSCLLLGGWRS--EWFSMHDVVRDVAISIASRD 204
            +L     LL G R     F +  ++      +    
Sbjct: 435 KRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 86.4 bits (213), Expect = 2e-17
 Identities = 67/373 (17%), Positives = 116/373 (31%), Gaps = 93/373 (24%)

Query: 3   GCKVLLTARSH---DVLSSKMDCQKNI--FVDVLNAKEAWSLFEKMTGDCIENGELKSVA 57
            CK+LLT R     D LS+      ++      L   E  SL  K         +L    
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD--CRPQDLPREV 322

Query: 58  TEIVKECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDE 117
                     P  +  +A+++++  +   W D  + +    L     + +E S   LE  
Sbjct: 323 ------LTTNPRRLSIIAESIRDGLAT--W-DNWKHVNCDKLT----TIIESSLNVLEPA 369

Query: 118 DLGGEELRKTFLLIGYSYIRNVKDLLYHGMGLGLFQ---NINT-------VDEARDRAHT 167
                E RK F             L        +F    +I T        D  +     
Sbjct: 370 -----EYRKMF-----------DRL-------SVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 168 LVDKLKNSCLLLGGWRSEWFSMHDVVRDVAISIASRDQ-HVFAVENEVVPLTSWPDKDVL 226
           +V+KL    L+    +    S+  +  ++ + + +    H   V++  +P T   D    
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD---- 462

Query: 227 KDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNF--FTGMTELRVLDFT--- 281
            D     L+                 YF  H  H LK  ++    T    +  LDF    
Sbjct: 463 -DLIPPYLDQ----------------YFYSHIGHHLKNIEHPERMTLFRMV-FLDFRFLE 504

Query: 282 ---RMHLLALPSSLGLLQNLQTLSL--DYCELGDM---AIIGDLKKLVILALRGSDMKEL 333
              R    A  +S  +L  LQ L     Y    D     ++  +       L   +   +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF----LPKIEENLI 560

Query: 334 VGEIGQLTQLRLL 346
             +   L ++ L+
Sbjct: 561 CSKYTDLLRIALM 573

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.6 bits (164), Expect = 2e-11
 Identities = 96/678 (14%), Positives = 210/678 (30%), Gaps = 183/678 (26%)

Query: 257 HNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGD 316
           H+ H +    +F TG  + +  D              L         ++    D   + D
Sbjct: 2   HHHHHM----DFETGEHQYQYKDI-------------LSVFEDAFVDNF----DCKDVQD 40

Query: 317 LKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGER 376
           + K +   L   ++  ++     ++    L   +LS+ EE+   +  +E       +  R
Sbjct: 41  MPKSI---LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--QKFVE-------EVLR 88

Query: 377 RN-----ASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISS 431
            N     + +        + +  + I+    L  D   F      R+             
Sbjct: 89  INYKFLMSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQVFAKYNVSRL------------Q 135

Query: 432 EISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDM----KSVLYGSDGEGFPQLK 487
              ++ +               +++L+  K++ + G   +    K+ +            
Sbjct: 136 PYLKLRQ--------------ALLELRPAKNVLIDG---VLGSGKTWVA----------- 167

Query: 488 RLEVVKNSNLLCVVD------TVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESF 541
            L+V  +  + C +D       +    +  T   +L+ LL +   N           +  
Sbjct: 168 -LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-- 224

Query: 542 CKVKDIRVEWC-DKLKNVFP-------LVIGRGLQQLQSIEV--TGCQNL---------E 582
                +R+     +L+ +         L++   +Q  ++       C+ L         +
Sbjct: 225 -----LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 583 VIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQ 642
            + AA     S + ++    LT      L                + P  E L     P+
Sbjct: 280 FLSAATTTHISLDHHSMT--LTPDEVKSLLLK------YLDCRPQDLPR-EVLTTN--PR 328

Query: 643 VKFKSTIHESTKKRFHTIKVLCIEGY-DYDGEELFETVENGVNAMIKGINFHP-DLKQIL 700
               S I ES +    T      + +   + ++L   +E+ +N         P + +++ 
Sbjct: 329 R--LSIIAESIRDGLAT-----WDNWKHVNCDKLTTIIESSLN------VLEPAEYRKMF 375

Query: 701 KQ-----ESSHANNLEVLEIYGCDNLINLVPSS-TSFQNLTTVAVDFCYGMINI--LTSS 752
            +      S+H     +L +   D + + V          + V        I+I  +   
Sbjct: 376 DRLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 753 TAKSLVRLKQMKIFHCKMIT--EIVVDDDEEG------DNYAANYEIVFSELKELRLSSL 804
               L     +   H  ++    I    D +       D Y  ++ I    LK +     
Sbjct: 435 LKVKLENEYAL---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-IGH-HLKNIEHPER 489

Query: 805 ESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQWDDEKRWAWK 864
            +L     ++   F+F  LE+ +  D    +  SG  L+T      QLK +   K +   
Sbjct: 490 MTLFRMVFLD---FRF--LEQKIRHDSTAWNA-SGSILNTLQ----QLKFY---KPYICD 536

Query: 865 DD------LNTTIQYLYQ 876
           +D      +N  + +L +
Sbjct: 537 NDPKYERLVNAILDFLPK 554

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 2e-09
 Identities = 72/481 (14%), Positives = 146/481 (30%), Gaps = 133/481 (27%)

Query: 14  DVLSSKMDCQKNI---FV-DVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKEC----- 64
             L SK   Q+ +   FV +VL     + L   +  +  +     S+ T +  E      
Sbjct: 69  WTLLSK---QEEMVQKFVEEVLRINYKF-LMSPIKTEQRQ----PSMMTRMYIEQRDRLY 120

Query: 65  -AGLPIAILPVAKALKNKSSLYVWKDALRQLKNKS------LLGAAYSSLELSYYHLEDE 117
                 A   V++ L+    L   + AL +L+         +LG+  + + L        
Sbjct: 121 NDNQVFAKYNVSR-LQPYLKL---RQALLELRPAKNVLIDGVLGSGKTWVALDV--CLSY 174

Query: 118 DLGGEELRKTF-LLIGY-----SYIRNVKDLLYHGMGLGLFQNINTVDEARDRAHTLVDK 171
            +  +   K F L +       + +  ++ LLY  +        +     + R H++  +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 172 LKN--------SCLLLGGWRSEWFSMHDVVRDVAISIASRDQHV---FAVENEVVPLTSW 220
           L+         +CLL             V+ +V      ++      F +  +++  T  
Sbjct: 234 LRRLLKSKPYENCLL-------------VLLNV------QNAKAWNAFNLSCKILLTTR- 273

Query: 221 PDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDF 280
             K V    +A +  + +++         ++K              +      + R  D 
Sbjct: 274 -FKQVTDFLSAATTTHISLDHHSMTLTPDEVK--------------SLLLKYLDCRPQDL 318

Query: 281 TRMHLLALPSSLGLL-----------QNLQTLSLDYCELGDMAIIGDLKKLVILALRGSD 329
            R  L   P  L ++            N + ++ D  +L    II    +  +  L  ++
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD--KL--TTII----ESSLNVLEPAE 370

Query: 330 MKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIE--WGKVEGVDGER-----RNASLH 382
            +++          RL + P        +I    +   W  V   D           SL 
Sbjct: 371 YRKMF--------DRLSVFP-----PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 383 ELNNLSKLTSLEILIQDEKTLPRDLSFF--KMLQRYRILIGSQWTWD--------YISSE 432
           E        S+  +  + K    +       ++  Y I        D        Y  S 
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS-DDLIPPYLDQYFYSH 476

Query: 433 I 433
           I
Sbjct: 477 I 477

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 81.8 bits (202), Expect = 3e-16
 Identities = 53/366 (14%), Positives = 107/366 (29%), Gaps = 75/366 (20%)

Query: 3   GCKVLLTARSHDVLSSKMDCQKNIFV-DVLNAKEAWSLFEKMTGDCIENGELKSVATEIV 61
            C++LLT R   V  S M  +  + V   L  ++   +            +L   A  I+
Sbjct: 257 QCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSII 314

Query: 62  KECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSS----------LELSY 111
           KEC G P+ +  +   L++  +   W+  L+QL+NK       SS          + +S 
Sbjct: 315 KECKGSPLVVSLIGALLRDFPNR--WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISV 372

Query: 112 YHLEDEDLGGEELRKTFLLIGYSYIRNVKDLLYHGMGLGLFQ---NINTVDEAR------ 162
             L       E+++  +                    L + Q    + T           
Sbjct: 373 EMLR------EDIKDYYTD------------------LSILQKDVKVPTKVLCILWDMET 408

Query: 163 DRAHTLVDKLKNSCLLLGGW--RSEWFSMHDVVRDVAISIASRDQHVFAVENEVVPLTSW 220
           +    ++ +  N  LL      +S  + +HD+  D               +         
Sbjct: 409 EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKI-------- 460

Query: 221 PDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDF 280
                      I+             +     Y+     + +            +  LD+
Sbjct: 461 -----------ITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHKELCALMFSLDW 509

Query: 281 TRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQL 340
            +     +  +  L+           +  D A+  + ++   L+L G  +         +
Sbjct: 510 IKAKTELVGPA-HLIHEFVEY-RHILDEKDCAVSENFQEF--LSLNGHLLGRQP--FPNI 563

Query: 341 TQLRLL 346
            QL L 
Sbjct: 564 VQLGLC 569

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.2 bits (170), Expect = 1e-12
 Identities = 39/190 (20%), Positives = 73/190 (38%), Gaps = 42/190 (22%)

Query: 233 SLNNSNINELPQGF-ECPQLKYFRIHNDHSLK-IPDNF--------FTGMTELRVLDFTR 282
           +L  + +  LP       +L+   I     L  +P+            G+  L+ L    
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192

Query: 283 MHLLALPSSLGLLQNLQTLSLDYCELGDM-AIIGDLKKLVILALRG-SDMKELVGEIGQL 340
             + +LP+S+  LQNL++L +    L  +   I  L KL  L LRG + ++      G  
Sbjct: 193 TGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252

Query: 341 TQLRLL-------IAPI------LSRLEELYIGESPIEWGKVEGVDGERRNASLHEL-NN 386
             L+ L       +  +      L++LE+L +                R   +L  L + 
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDL----------------RGCVNLSRLPSL 296

Query: 387 LSKLTSLEIL 396
           +++L +  I+
Sbjct: 297 IAQLPANCII 306

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 1e-10
 Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 29/192 (15%)

Query: 233 SLNNSNINELPQGFEC---PQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP 289
           +     +       E    P      + +    + PD  F  ++ L+ +      L+ LP
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMELP 120

Query: 290 SSLGLLQNLQTLSLDYCELGDM-AIIGDLKKLVILALRG-SDMKELVGEIGQLTQLRLLI 347
            ++     L+TL+L    L  + A I  L +L  L++R   ++ EL   +          
Sbjct: 121 DTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 348 APILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL-NNLSKLTSLEILIQDE---KTL 403
              L  L+ L +  + I                   L  +++ L +L+ L         L
Sbjct: 181 G--LVNLQSLRLEWTGIR-----------------SLPASIANLQNLKSLKIRNSPLSAL 221

Query: 404 PRDLSFFKMLQR 415
              +     L+ 
Sbjct: 222 GPAIHHLPKLEE 233

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 56/362 (15%), Positives = 103/362 (28%), Gaps = 94/362 (25%)

Query: 233 SLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNF--FTGMTELRVLDFTRMHLLALPS 290
           +L       L    +   L  ++ H +       +          ++   T   L A   
Sbjct: 16  NLYFQGSTALRPYHD--VLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATAD 73

Query: 291 SLGLLQ--NLQTLSLDYCELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLI 347
            L          L L    L         L  L  + +  + + EL   + Q   L    
Sbjct: 74  LLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGL---- 129

Query: 348 APILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDL 407
                  E L +  +P+               +L    +++ L  L  L          +
Sbjct: 130 -------ETLTLARNPLR--------------ALPA--SIASLNRLREL---------SI 157

Query: 408 SFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGG 467
                L               +   ++                 G    L  ++ L L  
Sbjct: 158 RACPELTE-------------LPEPLAS------------TDASGEHQGLVNLQSLRLEW 192

Query: 468 SLDMKSVLYGSDGEGFPQLKRLEV--VKNSNLLCVVDTVDRATALTTAFPVLESLLLRHL 525
           +  ++S+           L+ L+   ++NS L  +   +     L       E L LR  
Sbjct: 193 TG-IRSL-----PASIANLQNLKSLKIRNSPLSALGPAIHHLPKL-------EELDLRGC 239

Query: 526 SNLEKICRGPLAAESFCKVKDIR---VEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLE 582
           + L      P     F     ++   ++ C  L  + PL I R L QL+ +++ GC NL 
Sbjct: 240 TALRNY---P---PIFGGRAPLKRLILKDCSNLLTL-PLDIHR-LTQLEKLDLRGCVNLS 291

Query: 583 VI 584
            +
Sbjct: 292 RL 293

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 23/163 (14%), Positives = 39/163 (23%), Gaps = 38/163 (23%)

Query: 272 MTELRVLDFTR-MHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDM 330
            +    L F     L      L   Q       +           +     I    G  +
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS--AWRQANSNNPQIETRTGRAL 68

Query: 331 KELVGEIGQLTQLRLLI------------API--LSRLEELYIGESPIEWGKVEGVDGER 376
           K     +   TQ   +                  LS L+ + I  +              
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-------------- 114

Query: 377 RNASLHEL-NNLSKLTSLEILIQDE---KTLPRDLSFFKMLQR 415
               L EL + + +   LE L       + LP  ++    L+ 
Sbjct: 115 ---GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE 154

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.9 bits (154), Expect = 1e-10
 Identities = 31/178 (17%), Positives = 71/178 (39%), Gaps = 31/178 (17%)

Query: 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP 289
             ++   + IN++    +  +     +       +       +  +  L      + ++ 
Sbjct: 3   ATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASIQ 60

Query: 290 SSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL--- 346
             +  L NL+ L+L+  ++ D++ + +L KL  L +  + + ++   +  LT LR L   
Sbjct: 61  G-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLN 118

Query: 347 ------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEIL 396
                 I+P+  L+++  L +G                 N +L +L+ LS +T L  L
Sbjct: 119 EDNISDISPLANLTKMYSLNLG----------------ANHNLSDLSPLSNMTGLNYL 160

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 33/190 (17%), Positives = 70/190 (36%), Gaps = 28/190 (14%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELR 276
           +T    ++ L+  T + +    +  +        L+Y  ++ +    I     + + +L 
Sbjct: 34  VTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLT 91

Query: 277 VLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGE 336
            L     + +   S+L  L NL+ L L+   + D++ + +L K+  L L  +     +  
Sbjct: 92  NLYI-GTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP 150

Query: 337 IGQLTQLRLL---------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELN 385
           +  +T L  L         + PI  L+ L  L +  + IE               +  L 
Sbjct: 151 LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE--------------DISPLA 196

Query: 386 NLSKLTSLEI 395
           +L+ L     
Sbjct: 197 SLTSLHYFTA 206

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.0 bits (149), Expect = 6e-10
 Identities = 35/178 (19%), Positives = 71/178 (39%), Gaps = 31/178 (17%)

Query: 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP 289
           T + +  + I ++        L+   ++ D+   I       +T++  L+    H L+  
Sbjct: 91  TNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDL 148

Query: 290 SSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL--- 346
           S L  +  L  L++   ++ D+  I +L  L  L+L  + ++++   +  LT L      
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAY 207

Query: 347 ------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEIL 396
                 I P+  ++RL  L IG                 N  + +L+ L+ L+ L  L
Sbjct: 208 VNQITDITPVANMTRLNSLKIG-----------------NNKITDLSPLANLSQLTWL 248

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.5 bits (145), Expect = 2e-09
 Identities = 38/188 (20%), Positives = 75/188 (39%), Gaps = 29/188 (15%)

Query: 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP 289
             + LN  NI+++       ++    +  +H+L         MT L  L  T   +  + 
Sbjct: 113 RELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLS-NMTGLNYLTVTESKVKDVT 171

Query: 290 SSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL--- 346
             +  L +L +LSL+Y ++ D++ +  L  L       + + ++   +  +T+L  L   
Sbjct: 172 P-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIG 229

Query: 347 ------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELN----------NLS 388
                 ++P+  LS+L  L IG + I       ++  +    L  LN           L+
Sbjct: 230 NNKITDLSPLANLSQLTWLEIGTNQIS-----DINAVKDLTKLKMLNVGSNQISDISVLN 284

Query: 389 KLTSLEIL 396
            L+ L  L
Sbjct: 285 NLSQLNSL 292

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 2e-09
 Identities = 29/182 (15%), Positives = 68/182 (37%), Gaps = 30/182 (16%)

Query: 226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHL 285
           L +     L  +++ ++    E   +    +  +    I       +T L  L+     +
Sbjct: 21  LAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQI 78

Query: 286 LALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRL 345
             +   L  L  L  L +   ++ D++ + +L  L  L L   ++ ++   +  LT++  
Sbjct: 79  TDIS-PLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI-SPLANLTKMYS 136

Query: 346 L----------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSL 393
           L          ++P+  ++ L  L + ES ++               +  + NL+ L SL
Sbjct: 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVK--------------DVTPIANLTDLYSL 182

Query: 394 EI 395
            +
Sbjct: 183 SL 184

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 31/179 (17%)

Query: 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP 289
            ++SLN + I ++        L YF  + +    I       MT L  L      +  L 
Sbjct: 180 YSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237

Query: 290 SSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL--- 346
             L  L  L  L +   ++ D+  + DL KL +L +  + + ++   +  L+QL  L   
Sbjct: 238 P-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLN 295

Query: 347 --------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEI 395
                   +  I  L+ L  L++ ++ I                +  L +LSK+ S + 
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHIT--------------DIRPLASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 26/192 (13%), Positives = 73/192 (38%), Gaps = 28/192 (14%)

Query: 226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHL 285
           +     +++  S + ++        L    ++ +    I       +T L         +
Sbjct: 154 MTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI 211

Query: 286 LALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRL 345
             +   +  +  L +L +   ++ D++ + +L +L  L +  + + ++   +  LT+L++
Sbjct: 212 TDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINA-VKDLTKLKM 269

Query: 346 L---------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELN--------- 385
           L         I+ +  LS+L  L++  + +    +E + G     +L  L          
Sbjct: 270 LNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGG---LTNLTTLFLSQNHITDI 326

Query: 386 -NLSKLTSLEIL 396
             L+ L+ ++  
Sbjct: 327 RPLASLSKMDSA 338

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 58.0 bits (140), Expect = 9e-09
 Identities = 48/229 (20%), Positives = 82/229 (35%), Gaps = 56/229 (24%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELR 276
           LT+ PD  +    T + + ++N+  LP     P+L+   +  +    +P     G+ EL 
Sbjct: 52  LTTLPD-CLPAHITTLVIPDNNLTSLPALP--PELRTLEVSGNQLTSLPVL-PPGLLELS 107

Query: 277 VLDFTRMHLLALPSSL--------------GLLQNLQTLSLDYCELGDM-AIIGDLKKL- 320
           +      HL ALPS L               L   LQ LS+   +L  + A+  +L KL 
Sbjct: 108 IFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLW 167

Query: 321 ----------------VILALRGSDMKELVGEIGQLTQLRLL------IAPILSRLEELY 358
                             L++  + +  L     +L +L         +  + S L+EL 
Sbjct: 168 AYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELI 227

Query: 359 IGESPIEWGKVEGVDGERRNASLHELNNLS----KLTSLEILIQDEKTL 403
           +  + +                  EL  L     +LTSL +L     +L
Sbjct: 228 VSGNRL----------TSLPVLPSELKELMVSGNRLTSLPMLPSGLLSL 266

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 36/210 (17%), Positives = 65/210 (30%), Gaps = 49/210 (23%)

Query: 226 LKDC-----TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDF 280
           ++ C       +++  S +  LP       +    I +++   +P        ELR L+ 
Sbjct: 34  MRACLNNGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPALP----PELRTLEV 88

Query: 281 TRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQL 340
           +   L +LP     L  L   S     L  +        L  L + G+ +  L      L
Sbjct: 89  SGNQLTSLPVLPPGLLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLTSLPVLPPGL 143

Query: 341 TQLRLL------IAPILSRLEELY-----IGESPIEWGKVEGVDGERRNASLHELN---- 385
            +L +       +  + S L +L+     +   P+                L EL+    
Sbjct: 144 QELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPS------------GLQELSVSDN 191

Query: 386 -------NLSKLTSLEILIQDEKTLPRDLS 408
                    S+L  L        +LP   S
Sbjct: 192 QLASLPTLPSELYKLWAYNNRLTSLPALPS 221

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 23/187 (12%)

Query: 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP 289
             +S++++ +  LP      +L     +N+    +P       + L+ L  +   L +LP
Sbjct: 184 QELSVSDNQLASLPTLP--SELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLP 237

Query: 290 SSLGLLQNLQTLSLDYCELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL-- 346
                   L+ L +    L  +  +   L  L    +  + +  L   +  L+    +  
Sbjct: 238 VLPS---ELKELMVSGNRLTSLPMLPSGLLSLS---VYRNQLTRLPESLIHLSSETTVNL 291

Query: 347 --------IAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQ 398
                       L  +        PI    + G    R   +LH       + + E    
Sbjct: 292 EGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPA 351

Query: 399 DEKTLPR 405
                  
Sbjct: 352 PADRWHM 358

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 31/190 (16%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELR 276
           +T    +  L   T +  +   I  +        L      N+    I       +T+L 
Sbjct: 36  VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLV 93

Query: 277 VLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGE 336
            +      +  +   L  L NL  L+L   ++ D+  + +L  L  L L  + + ++   
Sbjct: 94  DILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SA 151

Query: 337 IGQLTQLRLL--------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNN 386
           +  LT L+ L        + P+  L+ LE L I  + +                  +++ 
Sbjct: 152 LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-----------------DISV 194

Query: 387 LSKLTSLEIL 396
           L+KLT+LE L
Sbjct: 195 LAKLTNLESL 204

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 4e-08
 Identities = 37/181 (20%), Positives = 74/181 (40%), Gaps = 29/181 (16%)

Query: 226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHL 285
           L +   +SLN + + ++        L    + N+    +     +G+T+L  L      +
Sbjct: 220 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277

Query: 286 LALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRL 345
             +   L  L  L  L L+  +L D++ I +LK L  L L  +++ ++   +  LT+L+ 
Sbjct: 278 SNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQR 335

Query: 346 L---------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLE 394
           L         ++ +  L+ +  L  G + I                L  L NL+++T L 
Sbjct: 336 LFFYNNKVSDVSSLANLTNINWLSAGHNQIS--------------DLTPLANLTRITQLG 381

Query: 395 I 395
           +
Sbjct: 382 L 382

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 5e-08
 Identities = 29/177 (16%), Positives = 65/177 (36%), Gaps = 29/177 (16%)

Query: 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP 289
           +A    ++ IN++       +     +   +         T + ++  L   R+ + ++ 
Sbjct: 5   SATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI- 61

Query: 290 SSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL--- 346
             +  L NL  ++    +L D+  + +L KLV + +  + + ++   +  LT L  L   
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLF 120

Query: 347 ------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEI 395
                 I P+  L+ L  L +  + I                +  L+ L+ L  L  
Sbjct: 121 NNQITDIDPLKNLTNLNRLELSSNTIS--------------DISALSGLTSLQQLSF 163

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 5e-08
 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 30/177 (16%)

Query: 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP 289
             + L+++ I+++        L+     N  +   P      +T L  LD +   +  + 
Sbjct: 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDIS 193

Query: 290 SSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL--- 346
             L  L NL++L     ++ D+  +G L  L  L+L G+ +K++ G +  LT L  L   
Sbjct: 194 -VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLA 251

Query: 347 ------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEI 395
                 +AP+  L++L EL +G + I               ++  L  L+ LT+LE+
Sbjct: 252 NNQISNLAPLSGLTKLTELKLGANQIS--------------NISPLAGLTALTNLEL 294

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 25/189 (13%)

Query: 226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHL 285
           L     +S  N  + +L        L+   I ++    I       +T L  L  T   +
Sbjct: 155 LTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQI 211

Query: 286 LALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRL 345
             +   LG+L NL  LSL+  +L D+  +  L  L  L L  + +  L   +  LT+L  
Sbjct: 212 SDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTE 269

Query: 346 L---------IAPI--LSRLEELYIGESPIEWGKVEGVDGER-------RNASLHELNNL 387
           L         I+P+  L+ L  L + E+ +E   +  +   +          ++ +++ +
Sbjct: 270 LKLGANQISNISPLAGLTALTNLELNENQLE--DISPISNLKNLTYLTLYFNNISDISPV 327

Query: 388 SKLTSLEIL 396
           S LT L+ L
Sbjct: 328 SSLTKLQRL 336

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 37/188 (19%), Positives = 67/188 (35%), Gaps = 31/188 (16%)

Query: 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP 289
           T I+ +N+ + ++       +L    ++N+    I       +T L  L      +  + 
Sbjct: 71  TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128

Query: 290 SSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL--- 346
             L  L NL  L L    + D++ +  L  L  L+    +    +  +  LT L  L   
Sbjct: 129 P-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSF--GNQVTDLKPLANLTTLERLDIS 185

Query: 347 ------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELN----------NLS 388
                 I+ +  L+ LE L    + I       +       +L EL+           L+
Sbjct: 186 SNKVSDISVLAKLTNLESLIATNNQIS-----DITPLGILTNLDELSLNGNQLKDIGTLA 240

Query: 389 KLTSLEIL 396
            LT+L  L
Sbjct: 241 SLTNLTDL 248

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 20/130 (15%), Positives = 50/130 (38%), Gaps = 4/130 (3%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELR 276
           +++      L   T + L  + I+ +        L    ++ +    I     + +  L 
Sbjct: 255 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLT 312

Query: 277 VLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGE 336
            L     ++  + S +  L  LQ L     ++ D++ + +L  +  L+   + + +L   
Sbjct: 313 YLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL-TP 370

Query: 337 IGQLTQLRLL 346
           +  LT++  L
Sbjct: 371 LANLTRITQL 380

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 18/190 (9%), Positives = 59/190 (31%), Gaps = 42/190 (22%)

Query: 234 LNNSNINELPQGFE-CPQLKYFRIHNDHSL-KIPDNFFTGMTELRVLDFTRMHLLALP-- 289
                       ++    L    ++N  +L K+P      + E+++++      ++    
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQL 291

Query: 290 -------SSLGLLQNLQTLSLDYCELGDMAI---IGDLKKLVILALRGSDMKELVGEIGQ 339
                  +   + + +Q + + Y  L    +   +  +KKL +L    + ++  +   G 
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS 351

Query: 340 LTQLRLL-------------IAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNN 386
             +L  L                   ++E L    + ++               +  + +
Sbjct: 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK--------------YIPNIFD 397

Query: 387 LSKLTSLEIL 396
              ++ +  +
Sbjct: 398 AKSVSVMSAI 407

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 9e-07
 Identities = 16/186 (8%), Positives = 51/186 (27%), Gaps = 27/186 (14%)

Query: 226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHL 285
            K    +    + ++  P+  +   L    I++D   K          +   +     ++
Sbjct: 137 QKQKMRMHYQKTFVDYDPRE-DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 286 LALPSSLGLLQNLQTLSLDYCELGDMAI--IGDLKKLVILALRGSDMKELVGEIGQLTQL 343
             +  ++  L  L+   +         I    + +         +       +   L  L
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT----EDLKWDNLKDL 251

Query: 344 RLL-------IAPI------LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKL 390
             +       +  +      L  ++ + +  +         + GE+       L +    
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG-------ISGEQLKDDWQALADAPVG 304

Query: 391 TSLEIL 396
             ++I+
Sbjct: 305 EKIQII 310

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 19/138 (13%), Positives = 47/138 (34%), Gaps = 21/138 (15%)

Query: 230 TAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTG-MTELRVLDF------ 280
            +++L  + I E+P  F     Q++     ++    IP+ F    ++ +  +DF      
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415

Query: 281 --TRMHLLALPSSLGLLQNLQTLSLDYCELG--DMAIIGDLKKLVILALRG--------S 328
                +   L  +     N+ +++L   ++      +      L  + L G        +
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 329 DMKELVGEIGQLTQLRLL 346
            +K+          L  +
Sbjct: 476 SLKDENENFKNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 30/197 (15%), Positives = 54/197 (27%), Gaps = 30/197 (15%)

Query: 230 TAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNF-------FTGMTELRVLDF 280
           ++I+L+N+ I++ P+        L    +  +   +IP N        F     L  +D 
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 281 TRMHLLALPSSLGL--LQNLQTLSLDYCELGDM-AIIGDLKKLVILALRGSD-------M 330
               L  L        L  L  + L Y           +   L    +R          +
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555

Query: 331 KELVGEIGQLTQLRLL----------IAPILSRLEELYIGESPIEWGKVEGVDGERRNAS 380
           +E    I     L  L             I   +  L I ++P     +  V        
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGM 615

Query: 381 LH-ELNNLSKLTSLEIL 396
                +    +   + L
Sbjct: 616 YMLFYDKTQDIRGCDAL 632

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 29/181 (16%)

Query: 226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHL 285
           L +   I+   SN+ +     +   +            I       +  L  L+     +
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQI 75

Query: 286 LALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRL 345
             L + L  L  +  L L    L +++ I  L+ +  L L  + + ++   +  L+ L++
Sbjct: 76  TDL-APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQV 133

Query: 346 L---------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLE 394
           L         I+P+  L+ L+ L IG + +                L  L NLSKLT+L+
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVS--------------DLTPLANLSKLTTLK 179

Query: 395 I 395
            
Sbjct: 180 A 180

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 32/190 (16%), Positives = 72/190 (37%), Gaps = 29/190 (15%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELR 276
           +T    +  L   T +S   + +  +        L    + ++    +       +T++ 
Sbjct: 31  VTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKIT 88

Query: 277 VLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGE 336
            L+ +   L  + S++  LQ+++TL L   ++ D+  +  L  L +L L  + +  +   
Sbjct: 89  ELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP- 146

Query: 337 IGQLTQLRLL---------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELN 385
           +  LT L+ L         + P+  LS+L  L   ++ I                +  L 
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS--------------DISPLA 192

Query: 386 NLSKLTSLEI 395
           +L  L  + +
Sbjct: 193 SLPNLIEVHL 202

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 33/181 (18%), Positives = 72/181 (39%), Gaps = 29/181 (16%)

Query: 226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHL 285
           L +   + L ++ I +L       ++    +  +    +      G+  ++ LD T   +
Sbjct: 62  LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQI 119

Query: 286 LALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRL 345
             + + L  L NLQ L LD  ++ +++ +  L  L  L++  + + +L   +  L++L  
Sbjct: 120 TDV-TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTT 177

Query: 346 L---------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLE 394
           L         I+P+  L  L E+++  + I                +  L N S L  + 
Sbjct: 178 LKADDNKISDISPLASLPNLIEVHLKNNQIS--------------DVSPLANTSNLFIVT 223

Query: 395 I 395
           +
Sbjct: 224 L 224

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 31/150 (20%)

Query: 260 HSLKIPDNF-FTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLK 318
               I   F    +     +   + ++     +   L  + TLS     +  +  +  L 
Sbjct: 5   QPTAINVIFPDPALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEGVQYLN 63

Query: 319 KLVILALRGSDMKELVGEIGQLTQLRLL---------IAPI--LSRLEELYIGESPIEWG 367
            L+ L L+ + + +L   +  LT++  L         ++ I  L  ++ L +  + I   
Sbjct: 64  NLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI--- 119

Query: 368 KVEGVDGERRNASLHELNNLSKLTSLEILI 397
                          ++  L+ L++L++L 
Sbjct: 120 --------------TDVTPLAGLSNLQVLY 135

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 7e-08
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 3/126 (2%)

Query: 222 DKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFT 281
              V  + T + L ++N+ +       P L    +  +   KI  + F  M  L  L  +
Sbjct: 221 RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280

Query: 282 RMHLLALPSSLGLLQNLQTLSLDYCELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQL 340
              L+AL      +  L+ L L +  L  +        +L  L L  + +  L  ++   
Sbjct: 281 NNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL--KLSTH 338

Query: 341 TQLRLL 346
             L+ L
Sbjct: 339 HTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 29/202 (14%), Positives = 71/202 (35%), Gaps = 23/202 (11%)

Query: 217 LTSWPDKDVLKDCTAISLN-NSNINELPQGFEC---PQLKYFRIHNDHSLKIPDNFFTGM 272
                  ++  DC    ++ +    ++  GFE       K     N    K+P       
Sbjct: 10  YKCIDS-NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 68

Query: 273 TELRVLDFTRMHLLALPS-SLGLLQNLQTLSLDYCELGDMA--IIGDLKKLVILALRGSD 329
            ++ +L+   + +  + + +      +Q L + +  +  +   +  ++  L +L L  +D
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128

Query: 330 MKELVGEI-GQLTQLRLL------IAPI-------LSRLEELYIGESPIEWGKVEGVDG- 374
           +  L   I     +L  L      +  I        + L+ L +  + +    +  +   
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 188

Query: 375 ERRNASLHELNNLSKLTSLEIL 396
              N S + L+ L+   ++E L
Sbjct: 189 FHANVSYNLLSTLAIPIAVEEL 210

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 45/266 (16%), Positives = 91/266 (34%), Gaps = 57/266 (21%)

Query: 230 TAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLA 287
           T + L  ++++ LP+G     P+L    + N++  +I D+ F   T L+ L  +   L  
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179

Query: 288 LP-----------------SSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDM 330
           +                  S+L +   ++ L   +  +  +       +L IL L+ +++
Sbjct: 180 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR-GPVNVELTILKLQHNNL 238

Query: 331 KELVGEIGQLTQLRLL------IAPI-------LSRLEELYIGESPIEWGKVEGVDGERR 377
            +    +     L  +      +  I       + RLE LYI  + +       ++   +
Sbjct: 239 TDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-----VALNLYGQ 292

Query: 378 N-ASLHELN-----------NLSKLTSLEILIQDE---KTLPRDLSFFKMLQRYRILIGS 422
              +L  L+           N  +   LE L  D     TL         L+    L  +
Sbjct: 293 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLT-LSHN 349

Query: 423 QWTWDYISSEISEIFRLMVASGANIC 448
            W  + + +    + R  V      C
Sbjct: 350 DWDCNSLRALFRNVARPAVDDADQHC 375

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 7e-08
 Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 24/176 (13%)

Query: 234 LNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLG 293
           LNN  ++ LP+    P L+      +   ++P+   + +  L V +     L  LP    
Sbjct: 78  LNNLGLSSLPE--LPPHLESLVASCNSLTELPELPQS-LKSLLVDNNNLKALSDLPP--- 131

Query: 294 LLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL------I 347
               L+ L +   +L  +  + +   L I+ +  + +K+L      L  +         +
Sbjct: 132 ---LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 188

Query: 348 API--LSRLEELY-----IGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEIL 396
             +  L  L  +Y     + + P     +E +     N  L EL  L  L  L  +
Sbjct: 189 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIV-AGNN-ILEELPELQNLPFLTTI 242

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 6e-06
 Identities = 30/202 (14%), Positives = 65/202 (32%), Gaps = 57/202 (28%)

Query: 234 LNNSNINELPQG-FECPQL-KYFRIHNDHSLKIPDNFFTG------------MTELRVLD 279
            ++SN+ E+P          +Y+   ++     P                    +   L+
Sbjct: 18  RHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELE 77

Query: 280 FTRMHLLALPSSLGLLQNLQTLSLDYCELGDM-AIIGDLKKLVILALRGSDMKEL----- 333
              + L +LP       +L++L      L ++  +   LK L++       + +L     
Sbjct: 78  LNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLE 134

Query: 334 -----------VGEIGQLTQLRLL---------IAPILSRLEELYIGESPIEWGKVEGVD 373
                      + E+   + L+++         +  +   LE +  G + +E        
Sbjct: 135 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE-------- 186

Query: 374 GERRNASLHELNNLSKLTSLEI 395
                  L EL NL  LT++  
Sbjct: 187 ------ELPELQNLPFLTAIYA 202

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 33/150 (22%), Positives = 50/150 (33%), Gaps = 15/150 (10%)

Query: 216 PLTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTEL 275
            L   PD         I+  N+ + ELP+    P L      N+   K+PD        L
Sbjct: 164 SLKKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL----PLSL 217

Query: 276 RVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVG 335
             +      L  LP  L  L  L T+  D   L    +      L  L +R + + +L  
Sbjct: 218 ESIVAGNNILEELP-ELQNLPFLTTIYADNNLL--KTLPDLPPSLEALNVRDNYLTDLPE 274

Query: 336 EIGQLTQLRLL------IAPILSRLEELYI 359
               LT L +       ++ +   L  L  
Sbjct: 275 LPQSLTFLDVSENIFSGLSELPPNLYYLNA 304

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 10/133 (7%)

Query: 224 DVLKDCTAISLNNSNINELPQG-FE-CPQLKYFRI-HNDHSLKIPDNFFTGMTELRVLDF 280
            VL     + L+ + I  +    F    QL+   +      L I    F  +  LR+LD 
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 281 TRMHLLALPSS-LGLLQNLQTLSLDYCELGDMAI----IGDLKKLVILALRGSDMKELV- 334
               +  L       L +L  L L +C L D  +      +LK L  L L  + ++ L  
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 335 -GEIGQLTQLRLL 346
               G+L  L+ +
Sbjct: 141 HPSFGKLNSLKSI 153

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 6e-06
 Identities = 32/219 (14%), Positives = 76/219 (34%), Gaps = 26/219 (11%)

Query: 226 LKDCTAISLNNSNINELP----QGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFT 281
                       NI +       G     +++  + +     +    F  + +L+VL+  
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298

Query: 282 RMHLLALPS-SLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGEI- 337
              +  +   +   L NLQ L+L Y  LG++  +    L K+  + L+ + +  +  +  
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

Query: 338 GQLTQLRLLIA--------PILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLS- 388
             L +L+ L            +  + ++++  + +       +     + S + L NL  
Sbjct: 359 KFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI 418

Query: 389 -----KLTSLEILIQDE---KTLPRDLSFFKMLQRYRIL 419
                ++  L+ILI ++    +   D            L
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGD-QTPSENPSLEQL 456

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 36/189 (19%), Positives = 67/189 (35%), Gaps = 36/189 (19%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQGF--ECPQLKYFRI-HNDHSLK-IPDNFFTGM 272
           LTS P   +    T + L ++ +  LP G   +  QL    +  N  S K        G 
Sbjct: 19  LTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 273 TELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYC---ELGDMAIIGDLKKLVILALRGSD 329
           T L+ LD +   ++ + S+   L+ L+ L   +    ++ + ++   L+ L+ L +  + 
Sbjct: 78  TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT- 136

Query: 330 MKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL--NNL 387
                            I   LS LE L +                  N+       +  
Sbjct: 137 ---------HTRVAFNGIFNGLSSLEVLKMA----------------GNSFQENFLPDIF 171

Query: 388 SKLTSLEIL 396
           ++L +L  L
Sbjct: 172 TELRNLTFL 180

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 24/158 (15%), Positives = 51/158 (32%), Gaps = 18/158 (11%)

Query: 216 PLTSWPDKDVLKDCTA---ISLNNSNINELPQG-FE-CPQLKYFRI-HNDHSLKIPDNFF 269
            L    +  V         + +++++      G F     L+  ++  N        + F
Sbjct: 112 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171

Query: 270 TGMTELRVLDFTRMHLLALPS-SLGLLQNLQTLSLDYCELG--DMAIIGDLKKLVILALR 326
           T +  L  LD ++  L  L   +   L +LQ L++ +      D      L  L +L   
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231

Query: 327 GSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPI 364
            + +     +          +    S L  L + ++  
Sbjct: 232 LNHIMTSKKQ---------ELQHFPSSLAFLNLTQNDF 260

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 35/184 (19%), Positives = 64/184 (34%), Gaps = 29/184 (15%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQG-FEC-PQLKYFRIHNDHSLKIPDNFFTGMTE 274
           L+  P + +  +   ++L  +NI  +    F     L+  ++  +   +I    F G+  
Sbjct: 66  LSEVP-QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS 124

Query: 275 LRVLDFTRMHLLALPS-SLGLLQNLQTLSLDYCELGDMA--IIGDLKKLVILALRGSDMK 331
           L  L+     L  +PS +   L  L+ L L    +  +       +  L+ L L      
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL------ 178

Query: 332 ELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLT 391
              GE+ +L  +       L  L+ L +G   I                +  L  L  L 
Sbjct: 179 ---GELKKLEYISEGAFEGLFNLKYLNLGMCNI--------------KDMPNLTPLVGLE 221

Query: 392 SLEI 395
            LE+
Sbjct: 222 ELEM 225

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 18/143 (12%)

Query: 234 LNNSNINELPQG-FEC-PQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRM-HLLALPS 290
           L ++ +  +P G FE   +L+   + N+    IP   F  +  L  LD   +  L  +  
Sbjct: 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 291 -SLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKEL-VGEIGQLTQLRLL-- 346
            +   L NL+ L+L  C + DM  +  L  L  L + G+   E+  G    L+ L+ L  
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

Query: 347 ----IAPI-------LSRLEELY 358
               ++ I       L+ L EL 
Sbjct: 250 MNSQVSLIERNAFDGLASLVELN 272

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.8 bits (126), Expect = 4e-07
 Identities = 34/201 (16%), Positives = 73/201 (36%), Gaps = 33/201 (16%)

Query: 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP 289
                 ++ I ++       +     +               +  +  +      + ++ 
Sbjct: 2   GETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV- 58

Query: 290 SSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL--- 346
             +  L N+  L L+  +L D+  + +LK L  L L  + +K+L   +  L +L+ L   
Sbjct: 59  QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLE 117

Query: 347 ------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQ 398
                 I  +  L +LE LY+G + I                  ++  LS+LT L+ L  
Sbjct: 118 HNGISDINGLVHLPQLESLYLGNNKIT-----------------DITVLSRLTKLDTLSL 160

Query: 399 DEKTLPRDLSFFKMLQRYRIL 419
           ++  +  D+     L + + L
Sbjct: 161 EDNQI-SDIVPLAGLTKLQNL 180

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 35/207 (16%), Positives = 70/207 (33%), Gaps = 31/207 (14%)

Query: 226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHL 285
           LK+   + L+ + I +L    +  +LK   + ++    I  N    + +L  L      +
Sbjct: 86  LKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKI 143

Query: 286 LALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRG---SDMKELVGEIGQLTQ 342
             + + L  L  L TLSL+  ++ D+  +  L KL  L L     SD++ L G       
Sbjct: 144 TDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAG------- 195

Query: 343 LRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKT 402
                   L  L+ L +                +       L   + + + +  +   + 
Sbjct: 196 --------LKNLDVLELFSQECLN---------KPINHQSNLVVPNTVKNTDGSLVTPEI 238

Query: 403 LPRDLSFFKMLQRYRILIGSQWTWDYI 429
           +  D   ++       L        +I
Sbjct: 239 IS-DDGDYEKPNVKWHLPEFTNEVSFI 264

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 21/160 (13%)

Query: 226 LKDCTAISLNNSNINELPQG---FECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTR 282
           L++   +   +S +  + +        +L Y  I   ++    D  F G+T L  L    
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 283 MHLLA--LPSSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKEL-VGEI 337
                  L +      NL  L L  C+L  +   +   L +L +L +  +++  L     
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517

Query: 338 GQLTQLRLL-------------IAPILSRLEELYIGESPI 364
            QL  L  L             +      L    +  + +
Sbjct: 518 NQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 230 TAISLNNSNINELPQG--FECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLA 287
             I L+ + +  L         +L++  +       I D  + G+  L  L  T   + +
Sbjct: 35  KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94

Query: 288 L-PSSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELV--GEIGQLTQ 342
             P S   L +L+ L     +L  +    IG L  L  L +  + +           LT 
Sbjct: 95  FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154

Query: 343 LRLL 346
           L  +
Sbjct: 155 LVHV 158

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 8/125 (6%)

Query: 226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHL 285
           L + +A+SL   +I  L    +  + +   I      ++       +  L+ L  T  + 
Sbjct: 284 LANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIR---CQLKQFPTLDLPFLKSLTLTM-NK 339

Query: 286 LALPSSLGLLQNLQTLSLDYCELGDMA----IIGDLKKLVILALRGSDMKELVGEIGQLT 341
            ++      L +L  L L    L               L  L L  +    +      L 
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLE 399

Query: 342 QLRLL 346
           +L+ L
Sbjct: 400 ELQHL 404

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 232 ISLNNSNINELPQGFECPQLKYFRI-HNDHSLKIPDNF-FTGMTELRVLDFTRMHLLALP 289
           ++L  +  +   +    P L Y  +  N  S     ++   G   LR LD +    + + 
Sbjct: 333 LTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS 392

Query: 290 SSLGLLQNLQTLSLDYCELGDMA---IIGDLKKLVILALRGSDMKEL-VGEIGQLTQLRL 345
           ++   L+ LQ L   +  L  +        L+KL+ L +  ++ K    G    LT L  
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452

Query: 346 L 346
           L
Sbjct: 453 L 453

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 9e-04
 Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 10/125 (8%)

Query: 232 ISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLD--FTRMHLLA 287
           + L  + I     G       L+           +       +  L+ L+     +H   
Sbjct: 85  LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144

Query: 288 LPSSLGLLQNLQTLSLDYCEL-----GDMAIIGDLKK-LVILALRGSDMKELVGEIGQLT 341
           LP+    L NL  + L Y  +      D+  + +  +  + L +  + +  +  +  Q  
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI 204

Query: 342 QLRLL 346
           +L  L
Sbjct: 205 KLHEL 209

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 37/185 (20%), Positives = 70/185 (37%), Gaps = 34/185 (18%)

Query: 224 DVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPD-NFFTGMTELRVLDFTR 282
           D   +    +L   ++ +     E   +     +N     I        +  +  L    
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNS---DIKSVQGIQYLPNVTKLFLNG 77

Query: 283 MHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQ 342
             L  +   L  L+NL  L LD  ++ D++ + DLKKL  L+L  + + ++ G +  L Q
Sbjct: 78  NKLTDI-KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQ 135

Query: 343 LRLL---------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLT 391
           L  L         I  +  L++L+ L + ++ I                  ++  L+ LT
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-----------------DIVPLAGLT 178

Query: 392 SLEIL 396
            L+ L
Sbjct: 179 KLQNL 183

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 3/126 (2%)

Query: 222 DKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFT 281
              V  + T + L ++N+ +       P L    +  +   KI  + F  M  L  L  +
Sbjct: 227 RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286

Query: 282 RMHLLALPSSLGLLQNLQTLSLDYCELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQL 340
              L+AL      +  L+ L L +  L  +        +L  L L  + +  L  ++   
Sbjct: 287 NNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL--KLSTH 344

Query: 341 TQLRLL 346
             L+ L
Sbjct: 345 HTLKNL 350

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 9e-06
 Identities = 20/138 (14%), Positives = 49/138 (35%), Gaps = 9/138 (6%)

Query: 217 LTSWPDKDVLKDCTAISLN-NSNINELPQGFE---CPQLKYFRIHNDHSLKIPDNFFTGM 272
                  ++  DC    ++ +    ++  GFE       K     N    K+P       
Sbjct: 16  YKCIDS-NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 74

Query: 273 TELRVLDFTRMHLLALPS-SLGLLQNLQTLSLDYCELGDMA--IIGDLKKLVILALRGSD 329
            ++ +L+   + +  + + +      +Q L + +  +  +   +  ++  L +L L  +D
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134

Query: 330 MKELVGEI-GQLTQLRLL 346
           +  L   I     +L  L
Sbjct: 135 LSSLPRGIFHNTPKLTTL 152

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 46/268 (17%), Positives = 90/268 (33%), Gaps = 55/268 (20%)

Query: 230 TAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLA 287
           T + L  ++++ LP+G     P+L    + N++  +I D+ F   T L+ L  +   L  
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185

Query: 288 LP-----------------SSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDM 330
           +                  S+L +   ++ L   +  +  +       +L IL L+ +++
Sbjct: 186 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR-GPVNVELTILKLQHNNL 244

Query: 331 KELVGEIGQLTQLRLL------IAPI-------LSRLEELYIGESPIEWGKVEGVDGERR 377
            +    +     L  +      +  I       + RLE LYI  + +    + G      
Sbjct: 245 TDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP---- 299

Query: 378 NASLHELN-----------NLSKLTSLEILIQDE---KTLPRDLSFFKMLQRYRILIGSQ 423
             +L  L+           N  +   LE L  D     TL         L+    L  + 
Sbjct: 300 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLT-LSHND 356

Query: 424 WTWDYISSEISEIFRLMVASGANICLNG 451
           W  + + +    + R  V      C   
Sbjct: 357 WDCNSLRALFRNVARPAVDDADQHCKID 384

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 6e-07
 Identities = 31/214 (14%), Positives = 70/214 (32%), Gaps = 44/214 (20%)

Query: 226 LKDCTAISL-NNSNINELPQGF-ECPQLKYFRIHN----------DHSLKIPDNFFTGMT 273
           LKD T + L N  N+ +LP    + P+L+   I                ++ D+      
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED-TGP 548

Query: 274 ELRVLDFTRMHLLALPSSLGL--LQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMK 331
           ++++      +L   P+S  L  +  L  L   + ++  +   G   KL  L L  + ++
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE 608

Query: 332 ELVGEIGQ-LTQLRLL---------IAPI-----LSRLEELYIGESPIE--WGKVEGVDG 374
           E+  +      Q+  L         I  I     +  +  +    + I      +     
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 375 ERRNASLHEL----NNLS--------KLTSLEIL 396
           + +  +   +    N +           + +  +
Sbjct: 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 5e-06
 Identities = 16/151 (10%), Positives = 43/151 (28%), Gaps = 21/151 (13%)

Query: 217 LTSWPDKDVLKDCTA---ISLNNSNINELPQG-------FECPQLKYFRIHNDHSLKIPD 266
           L   P+    K       +  + + I    +        ++        +  +   K P 
Sbjct: 631 LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690

Query: 267 NFFTGMTELRVLDFTRMHLLALPS--------SLGLLQNLQTLSLDYCELGDM---AIIG 315
             F   + +  +  +   + ++P         +      L T+ L + +L  +       
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750

Query: 316 DLKKLVILALRGSDMKELVGEIGQLTQLRLL 346
            L  L  + +  +       +    +QL+  
Sbjct: 751 TLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF 781

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 17/204 (8%), Positives = 37/204 (18%), Gaps = 47/204 (23%)

Query: 232 ISLNNSNINELPQGFECPQLKYFRIHNDHSLK---IPDNFFTGMTELRVLDFTRMHLL-- 286
           +S    +     + F   +L                   F      L + D  +  +   
Sbjct: 352 LSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411

Query: 287 ---------------------------ALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKK 319
                                       +  ++  L  LQ +               +  
Sbjct: 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFT--YDNIAVDW 469

Query: 320 LVILALRGSDMKELVGEIGQLTQLRLL-------IAPI------LSRLEELYIGESPIEW 366
               +      +        L  L  +       +  +      L  L+ L I  +    
Sbjct: 470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

Query: 367 GKVEGVDGERRNASLHELNNLSKL 390
                 D  R          +   
Sbjct: 530 AAQLKADWTRLADDEDTGPKIQIF 553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 7e-07
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 7/136 (5%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQG-FE-CPQLKYFRIHNDHSLKIPDNFFTGMTE 274
           L   P   +      +  + + +  +    F     L +  +       I ++ F     
Sbjct: 24  LNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR 82

Query: 275 LRVLDFTRMHLLALPS-SLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMK 331
           L  L  T   L+ +   +L   + L+ L      +  +    + + K L  L L  + + 
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142

Query: 332 EL-VGEIGQLTQLRLL 346
            + + +     +L++L
Sbjct: 143 SIKLPKGFPTEKLKVL 158

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 3e-06
 Identities = 36/183 (19%), Positives = 66/183 (36%), Gaps = 30/183 (16%)

Query: 233 SLNNSNINELP----QGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL 288
           +  + +  ++     +G     ++   +   +   I  N F   + L+ LD T  HL  L
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293

Query: 289 PSSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL 346
           PS L  L  L+ L L   +  ++      +   L  L+++G+          +  +L   
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN---------TKRLELGTG 344

Query: 347 IAPILSRLEELYIGESPIEWGKVEGVDGERRN-ASLHEL----NNLS--------KLTSL 393
               L  L EL +    IE    +  + + RN + L  L    N           +   L
Sbjct: 345 CLENLENLRELDLSHDDIE--TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402

Query: 394 EIL 396
           E+L
Sbjct: 403 ELL 405

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 12/128 (9%)

Query: 232 ISLNNSNINELPQGFE----CPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHL-- 285
           + L++ +I               L+   +  +  L +    F    +L +LD     L  
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414

Query: 286 LALPSSLGLLQNLQTLSLDYCELGDMA--IIGDLKKLVILALRGSDMKEL----VGEIGQ 339
               S    L  L+ L+L +  L   +  +   L  L  L L+G+   +        +  
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 340 LTQLRLLI 347
           L +L +L+
Sbjct: 475 LGRLEILV 482

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 8e-05
 Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 24/157 (15%)

Query: 232 ISLNNSNINEL-PQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLD-----FTRM 283
           + L  + +     Q        LK   + +       +  F G+  L+ L+     F + 
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 284 HLLALPSSLGLLQNLQTLSLDYCELGDMA--IIGDLKKLVILALRGSDMKELVGEI-GQL 340
           ++    +SL  L  L+ L L +C+L  +       LK +  + L  + +     E    L
Sbjct: 465 NIQK-TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523

Query: 341 TQLRLLIA------------PILSRLEELYIGESPIE 365
             + L +A            PILS+   + + ++P++
Sbjct: 524 KGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 71/441 (16%), Positives = 154/441 (34%), Gaps = 61/441 (13%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQG--FECPQLKYFRIHNDHSLKIPDNFFTGMTE 274
            TS P   +     ++ L+ + I  +  G    C  L+   + +     I  + F  +  
Sbjct: 17  FTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75

Query: 275 LRVLDFTRMHLLALPSS-LGLLQNLQTLSLDYC---ELGDMAIIGDLKKLVILALRGSDM 330
           L  LD +  HL +L SS  G L +L+ L+L       LG  ++  +L  L  L +   + 
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE- 134

Query: 331 KELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKL 390
                     +++R +    L+ L EL I    +            RN     L ++  +
Sbjct: 135 --------TFSEIRRIDFAGLTSLNELEIKALSL------------RNYQSQSLKSIRDI 174

Query: 391 TSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLN 450
             L + + +   L     F  +L   R L              S +    V+S       
Sbjct: 175 HHLTLHLSESAFLLEI--FADILSSVRYLELRDTNLARFQ--FSPLPVDEVSSPMKKLAF 230

Query: 451 GGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATAL 510
            G ++  +   +L                     +L  +E    + L  + D     + +
Sbjct: 231 RGSVLTDESFNELL-------------KLLRYILELSEVEFDDCT-LNGLGDFNPSESDV 276

Query: 511 TTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLK-NVFPLVIGRGLQQ 569
            +    +E++ +R L ++ +       +  +  ++ ++    +  K  + P    + L+ 
Sbjct: 277 VSELGKVETVTIRRL-HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335

Query: 570 LQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELT--QLTTLE-----LCSLPQLT---- 618
           L+ ++++    +   +      + +  + Q + L+   L +++     L +L  LT    
Sbjct: 336 LEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394

Query: 619 SFCT-GDLHFEFPSLEKLKIL 638
           S  T   +       EK++ L
Sbjct: 395 SRNTFHPMPDSCQWPEKMRFL 415

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 23/180 (12%), Positives = 57/180 (31%), Gaps = 27/180 (15%)

Query: 232 ISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS 291
            + + S++       E   ++   I   +        ++ + +++ +      +  +P S
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 292 LG-LLQNLQTLSLDYCELGDMAI-----IGDLKKLVILALRGSDMKELVGEIGQLTQLRL 345
               L++L+ L L    + +  +      G    L  L L  + ++ +      L  L+ 
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK- 387

Query: 346 LIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL----NNLSKL-----TSLEIL 396
                   L  L I  +          D  +    +  L      +  +      +LE+L
Sbjct: 388 -------NLTSLDISRNTFHPMP----DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVL 436

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 248 CPQLKYFRI-HND-HSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY 305
            P L+   +  N   S++        +  L  LD +R     +P S    + ++ L+L  
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS 419

Query: 306 CELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRL 345
             +  +      + L +L +  +++      + +L +L +
Sbjct: 420 TGIRVVK-TCIPQTLEVLDVSNNNLDSFSLFLPRLQELYI 458

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 226 LKDCTAISLNNSNINELPQGFECPQLKYFRI-HNDHSLK-IPDNFFTGMTELRVLDFTRM 283
           LK    ++  ++         + P L++  +  N  S K        G T L+ LD +  
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 284 HLLALPSSLGLLQNLQTLSLDYCELGDM---AIIGDLKKLVILALRGSDMKELV-GEIGQ 339
            ++ + S+   L+ L+ L   +  L  M   ++   L+ L+ L +  +  +    G    
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 340 LTQLRLL 346
           L+ L +L
Sbjct: 444 LSSLEVL 450

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 7/124 (5%)

Query: 230 TAISLNNSNINELPQG--FECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLA 287
             + L+ + +  L     F  P+L+   +       I D  +  ++ L  L  T   + +
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 288 L-PSSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELV--GEIGQLTQ 342
           L   +   L +LQ L      L  +    IG LK L  L +  + ++          LT 
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150

Query: 343 LRLL 346
           L  L
Sbjct: 151 LEHL 154

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 20/125 (16%), Positives = 35/125 (28%), Gaps = 8/125 (6%)

Query: 226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHL 285
           L + ++ SL +  I  +         ++  + N    + P      +  L          
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK---- 336

Query: 286 LALPSSLGLLQNLQTLSLDYCELGDMAII----GDLKKLVILALRGSDMKELVGEIGQLT 341
                S   L +L+ L L    L               L  L L  + +  +      L 
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 396

Query: 342 QLRLL 346
           QL  L
Sbjct: 397 QLEHL 401

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 22/139 (15%), Positives = 49/139 (35%), Gaps = 14/139 (10%)

Query: 233 SLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSL 292
             N +    L +     Q    +++  +   +PDN      ++ VL+ T+  L++LP   
Sbjct: 43  GENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPP---QITVLEITQNALISLPELP 99

Query: 293 GLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRL------L 346
               +L+ L      L    +      L  L +  + +  L      L  +        +
Sbjct: 100 A---SLEYLDACDNRL--STLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM 154

Query: 347 IAPILSRLEELYIGESPIE 365
           +  + + LE L +  + + 
Sbjct: 155 LPELPTSLEVLSVRNNQLT 173

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 22/189 (11%), Positives = 52/189 (27%), Gaps = 15/189 (7%)

Query: 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP 289
             I+ +N+ +  LP+      L+   + N+    +P+        L  LD +   L +LP
Sbjct: 143 EYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE----LPESLEALDVSTNLLESLP 196

Query: 290 SSLGLLQNLQT----LSLDYCELGDM-AIIGDLKKLVILALRGSDMKELV-GEIGQLTQL 343
           +      + +            +  +   I  L     + L  + +   +   + Q T  
Sbjct: 197 AVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256

Query: 344 RLLIAPILS---RLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDE 400
                P +       +      P+           +++      +               
Sbjct: 257 PDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFL 316

Query: 401 KTLPRDLSF 409
             L   +S 
Sbjct: 317 DRLSDTVSA 325

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 27/181 (14%), Positives = 59/181 (32%), Gaps = 36/181 (19%)

Query: 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP 289
           T +  +  N+N           K +           +     M  L  +    +++  L 
Sbjct: 6   TGLKASQDNVN-----IPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL- 59

Query: 290 SSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMK-ELVGEIGQLTQLRLL-- 346
           + +    N++ L+++     +   I  L  L  L + G D+  + +  +  LT L LL  
Sbjct: 60  TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 347 ---------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEI 395
                    +  I  L ++  + +                  N ++ ++  L  L  L+ 
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLS----------------YNGAITDIMPLKTLPELKS 163

Query: 396 L 396
           L
Sbjct: 164 L 164

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 33/200 (16%), Positives = 63/200 (31%), Gaps = 39/200 (19%)

Query: 221 PDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPD-NFFTGMTELRVLD 279
           PD    K      L  S+   + +  +   L Y  + N     + D         ++ L 
Sbjct: 18  PDST-FKAYLNGLLGQSSTANITEA-QMNSLTYITLANI---NVTDLTGIEYAHNIKDLT 72

Query: 280 FTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAI--IGDLKKLVILALRGSDMKEL-VGE 336
              +H     + +  L NL+ L +   ++    I  +  L  L +L +  S   +  + +
Sbjct: 73  INNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 337 IGQLTQLRLL----------IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHEL 384
           I  L ++  +          I P+  L  L+ L I    +                   +
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH--------------DYRGI 177

Query: 385 NNLSKLTSLEI---LIQDEK 401
            +  KL  L      I  +K
Sbjct: 178 EDFPKLNQLYAFSQTIGGKK 197

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 7/136 (5%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQG-FE-CPQLKYFRIHNDHSLKIPDNFFTGMTE 274
           LT  PD D+  + T ++L ++ +  LP   F    QL    +  +   K+       +  
Sbjct: 16  LTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM 74

Query: 275 LRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMK 331
           L+VL+     L  L   +     NL  L L    +  +        K L+ L L  + + 
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

Query: 332 EL-VGEIGQLTQLRLL 346
              +G   QL  L+ L
Sbjct: 135 STKLGTQVQLENLQEL 150

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 10/136 (7%)

Query: 232 ISLNNSNINELPQGFE---CPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL 288
           + L  + I +   G E      +    +  +  L++  N F  +  L+ L   R+ L  +
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 289 PSSLGL---LQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGEIGQLTQL 343
            SS      L+NL  L L    + ++   ++  L+KL IL L+ +++  L         +
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 344 RLLIAPILSRLEELYI 359
             L    LS L  L +
Sbjct: 530 YFL--KGLSHLHILNL 543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 26/155 (16%), Positives = 58/155 (37%), Gaps = 20/155 (12%)

Query: 230 TAISLNNSNINELPQGF-ECPQLKYFRI-HNDHSLKIPDNFFTGMTELRVLDFTRMHLLA 287
             + L+ + +  +   F    QL++    H++       + F  +  L  LD +  H   
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 288 LPSS-LGLLQNLQTLSLDYCELGDM---AIIGDLKKLVILALRGSDMKELVGEI-GQLTQ 342
             +     L +L+ L +      +     I  +L+ L  L L    +++L       L+ 
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 343 LRLL-------------IAPILSRLEELYIGESPI 364
           L++L             I   L+ L+++++  +P 
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 25/154 (16%), Positives = 55/154 (35%), Gaps = 20/154 (12%)

Query: 226 LKDCTAISLNNSNINELPQGFECPQLKYFRI-HND-HSLKIPDNFFTGMTELRVLDFTRM 283
           LK    ++  ++         + P L++  +  N             G T L+ LD +  
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 284 HLLALPSSLGLLQNLQTLSLDYC---ELGDMAIIGDLKKLVILALRGSDMKEL-VGEIGQ 339
            ++ + S+   L+ L+ L   +    ++ + ++   L+ L+ L +  +  +    G    
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 340 LTQLRLL--------------IAPILSRLEELYI 359
           L+ L +L              I   L  L  L +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 7/124 (5%)

Query: 230 TAISLNNSNINELPQG--FECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLA 287
             + L+ + +  L     F  P+L+   +       I D  +  ++ L  L  T   + +
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 288 LPS-SLGLLQNLQTLSLDYCELGDMA--IIGDLKKLVILALRGSDMKEL--VGEIGQLTQ 342
           L   +   L +LQ L      L  +    IG LK L  L +  + ++          LT 
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150

Query: 343 LRLL 346
           L  L
Sbjct: 151 LEHL 154

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 43/276 (15%), Positives = 88/276 (31%), Gaps = 32/276 (11%)

Query: 232 ISLNNSNINELPQG-FE-CPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHL--LA 287
           + L  + I  L  G F     L+       +   + +     +  L+ L+     +    
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 288 LPSSLGLLQNLQTLSLDYCEL-----GDMAIIGDLKKLVI-LALRGSDMKELVGEIGQLT 341
           LP     L NL+ L L   ++      D+ ++  +  L + L L  + M  +     +  
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 342 QLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEK 401
           +L            +L +  +      ++          +  L  L     +    ++E 
Sbjct: 201 RLH-----------KLTLRNNFDSLNVMKTC--------IQGLAGLEVHRLVLGEFRNEG 241

Query: 402 TLPR-DLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGI 460
            L + D S  + L    I        DY   +I ++F  +  + ++  L    I ++K  
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL-TNVSSFSLVSVTIERVKDF 300

Query: 461 KDLCLGGSLDMKSV-LYGSDGEGFPQLKRLEVVKNS 495
                   L++ +             LKRL    N 
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 4e-06
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 18/143 (12%)

Query: 234 LNNSNINELPQG-FEC-PQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRM-HLLALPS 290
           L ++ +  +P G F    +LK   + N+    IP   F  +  LR LD   +  L  +  
Sbjct: 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 291 -SLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEI----GQLTQLRL 345
            +   L NL+ L+L  C L ++  +  L KL  L L G+ +  +          L +L +
Sbjct: 179 GAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 346 ---LIAPI-------LSRLEELY 358
               I  I       L  L E+ 
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEIN 261

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 5e-06
 Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 29/184 (15%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTE 274
           L   PD  +  +   ++L+ + I  +    F     L+  ++  +H   I    F G+  
Sbjct: 55  LREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113

Query: 275 LRVLDFTRMHLLALPS-SLGLLQNLQTLSLDYCELGDMA--IIGDLKKLVILALRGSDMK 331
           L  L+     L  +P+ +   L  L+ L L    +  +       +  L  L L      
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL------ 167

Query: 332 ELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLT 391
              GE+ +L+ +       LS L  L +    +                +  L  L KL 
Sbjct: 168 ---GELKRLSYISEGAFEGLSNLRYLNLAMCNL--------------REIPNLTPLIKLD 210

Query: 392 SLEI 395
            L++
Sbjct: 211 ELDL 214

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 16/154 (10%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQG--FECPQLKYFRIHNDHSLKIPDNFFTGMTE 274
           L S P   + +   ++ L+N+ I  +       C  L+   + ++    I ++ F+ +  
Sbjct: 43  LNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101

Query: 275 LRVLDFTRMHLLALPSSL-GLLQNLQTLSLDYC---ELGDMAIIGDLKKLVILALRGSDM 330
           L  LD +  +L  L SS    L +L  L+L       LG+ ++   L KL IL +     
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV----- 156

Query: 331 KELVGEIGQLTQLRLLIAPILSRLEELYIGESPI 364
               G +   T+++      L+ LEEL I  S +
Sbjct: 157 ----GNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 16/174 (9%)

Query: 230 TAISLNNSNINELPQG---FECPQLKYFRIHNDHSLK-IPDNFFTGMTELRVLDFTRMHL 285
           T ++L  +    L +        +L+  R+ N  +   I    F G+T L  L+     L
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 286 LALPS-SLGLLQNLQTLSLDYCELG--DMAIIGDLKKLVILALRGSDMKELVGEIGQLTQ 342
            +    SL  +QN+  L L   +        +     +  L LR +D+        +L+ 
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF--HFSELST 244

Query: 343 LRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLS--KLTSLE 394
                         + I +  +     + +    + + L EL   S  +L S+ 
Sbjct: 245 GETNSLIKKFTFRNVKITDESL----FQVMKLLNQISGLLEL-EFSRNQLKSVP 293

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 14/106 (13%)

Query: 216 PLTSWPDKDVLKDCTAIS---LNNSNINELPQGF-------ECPQLKYFRIHNDHSLKIP 265
            L S+     LK    +S   L+      L + F       EC +L+   +   H  ++ 
Sbjct: 185 DLQSYEP-KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 266 DNFF---TGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCEL 308
                        R +  T   L  +   L  +  L  L     +L
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 49.1 bits (117), Expect = 7e-06
 Identities = 43/205 (20%), Positives = 77/205 (37%), Gaps = 30/205 (14%)

Query: 3   GCKVLLTARSHDVLSSKMDCQKNIFVDV-LNAKEAWSLFEKMTGDCIENGELKSVATEIV 61
            C++LLT R   V  S M  +  + V+  L  ++   +        ++  +L + A  I+
Sbjct: 257 QCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVN--MKKEDLPAEAHSII 314

Query: 62  KECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGG 121
           KEC G P+ +  +   L++  +   W   LRQL+NK          + S Y  E      
Sbjct: 315 KECKGSPLVVSLIGALLRDFPN--RWAYYLRQLQNKQFKRI----RKSSSYDYEA----- 363

Query: 122 EELRKTFLLIGYSYIRNVKDLLYHGMGLGLFQNINTV---------DEARDRAHTLVDKL 172
             L +   +       ++KD       L + Q    V         D   +    ++ + 
Sbjct: 364 --LDEAMSISVEMLREDIKDYYT---DLSILQKDVKVPTKVLCVLWDLETEEVEDILQEF 418

Query: 173 KNSCLLLGGW--RSEWFSMHDVVRD 195
            N  LL      +S  + +HD+  D
Sbjct: 419 VNKSLLFCNRNGKSFCYYLHDLQVD 443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 22/191 (11%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQG-FE-CPQLKYFRIHNDH--SLKIPDNFFTGM 272
           L   P+  + K    + ++ + I ++ +  F    Q+    +  +   S  I +  F GM
Sbjct: 112 LKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 273 TELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELG--DMAIIGDLKKLVILALRGSDM 330
            +L  +     ++  +P   GL  +L  L LD  ++   D A +  L  L  L L  + +
Sbjct: 171 KKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228

Query: 331 KEL-VGEIGQLTQLRLL------------IAPILSRLEELYIGESPIEWGKVEGVDGERR 377
             +  G +     LR L                   ++ +Y+  + I             
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288

Query: 378 NASLHELNNLS 388
           N      + +S
Sbjct: 289 NTKKASYSGVS 299

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 29/191 (15%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQG-FE-CPQLKYFRIHNDHSLKIPDNFFTGMTE 274
           L   P  D+  D   + L N+ I E+  G F+    L    + N+   KI    F  + +
Sbjct: 43  LEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101

Query: 275 LRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELG--DMAIIGDLKKLVILALRGSDMKE 332
           L  L  ++  L  LP    + + LQ L +   E+     ++   L +++++ L  + +K 
Sbjct: 102 LERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159

Query: 333 LVGEIG---QLTQLRLLI----------APILSRLEELYIGESPIEWGKVEGVDGERRNA 379
              E G    + +L  +             +   L EL++  + I   KV+        A
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT--KVDA-------A 210

Query: 380 SLHELNNLSKL 390
           SL  LNNL+KL
Sbjct: 211 SLKGLNNLAKL 221

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 38/190 (20%), Positives = 79/190 (41%), Gaps = 28/190 (14%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQG-FE-CPQLKYFRIHNDHSLKIPDNFFTGMTE 274
           L + P K++  D T + L N++I+EL +  F+    L    + N+   KI +  F+ + +
Sbjct: 45  LKAVP-KEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103

Query: 275 LRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMA--IIGDLKKLVILALRGSDMKE 332
           L+ L  ++ HL+ +P    L  +L  L +    +  +   +   L+ +  + + G+ ++ 
Sbjct: 104 LQKLYISKNHLVEIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161

Query: 333 LVGEIGQLTQLRLLI------------APILSRLEELYIGESPIEWGKVEGVDGERRNAS 380
              E G    L+L                +   L EL++  + I+   +E          
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ--AIE-------LED 212

Query: 381 LHELNNLSKL 390
           L   + L +L
Sbjct: 213 LLRYSKLYRL 222

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTE 274
           LT  P KD+ +    + L+++ I  +         +L    + ++    I +   + +  
Sbjct: 184 LTGIP-KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242

Query: 275 LRVLDFTRMHLLALPSSLGLLQNLQTLSLDY 305
           LR L      L  +P+ L  L+ LQ + L  
Sbjct: 243 LRELHLDNNKLSRVPAGLPDLKLLQVVYLHT 273

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 35/202 (17%), Positives = 70/202 (34%), Gaps = 27/202 (13%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQG-FE-CPQLKYFRIHNDH--SLKIPDNFFTGM 272
           L   P  ++      + ++++ I ++P+G F     +    +  +   +       F G+
Sbjct: 114 LVEIPP-NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 273 TELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDM 330
             L  L  +   L  +P    L + L  L LD+ ++  +    +    KL  L L  + +
Sbjct: 173 K-LNYLRISEAKLTGIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229

Query: 331 KEL-VGEIGQLTQLRLL------------IAPILSRLEELYIGESPIEWGKVEGVDGERR 377
           + +  G +  L  LR L              P L  L+ +Y+  + I    V        
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289

Query: 378 NASLHELNNLS----KLTSLEI 395
                  N +S     +   E+
Sbjct: 290 GVKRAYYNGISLFNNPVPYWEV 311

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 1e-05
 Identities = 21/154 (13%), Positives = 51/154 (33%), Gaps = 24/154 (15%)

Query: 230 TAISLNNSNIN-ELPQGFE---CPQLKYFRI-HNDHSLKIPDNFFTGMTELRVLDFTRMH 284
           T++ L+ ++++  +        C  LK+  +  N        +    +  L VLD +   
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

Query: 285 L-LALPSSL---GLLQNLQTLSLDYCELGDMAI-IGDLKKLVILALRGSDMKELVGEIGQ 339
           +  A             L+ L++   ++    + +     L  L +  ++    +  +G 
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISG-DVDVSRCVNLEFLDVSSNNFSTGIPFLGD 221

Query: 340 LTQLRLLIA-------PI------LSRLEELYIG 360
            + L+ L                  + L+ L I 
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 4e-05
 Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 37/189 (19%)

Query: 230 TAISLNNSNIN-ELPQGFECPQLKYFRI-HNDHSLKIPDNFFTGMTELRVLDFTRMHLL- 286
             ++++++     +P       L+Y  +  N  + +IPD        L  LD +  H   
Sbjct: 250 KLLNISSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308

Query: 287 ALPSSLGLLQNLQTLSLDYCELGD---MAIIGDLKKLVILALRGSDMKELVGEI----GQ 339
           A+P   G    L++L+L          M  +  ++ L +L L  +   E  GE+      
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN---EFSGELPESLTN 365

Query: 340 LTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL----NNLS------- 388
           L+          + L  L +  +    G +     +    +L EL    N  +       
Sbjct: 366 LS----------ASLLTLDLSSNNFS-GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414

Query: 389 -KLTSLEIL 396
              + L  L
Sbjct: 415 SNCSELVSL 423

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 25/181 (13%), Positives = 53/181 (29%), Gaps = 15/181 (8%)

Query: 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFT--RMHLLA 287
             +   N+NI+ +         K   + N+    + D      + ++ LD     +  + 
Sbjct: 102 ETLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 288 LPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL- 346
                     L+ L+L Y  + D+       KL  L L  + +  +  E      +  + 
Sbjct: 161 FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220

Query: 347 -----IAPI------LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEI 395
                +  I         LE   +  +    G +     + +         + KLT    
Sbjct: 221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 396 L 396
            
Sbjct: 281 E 281

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 11/130 (8%)

Query: 239 INELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQN 297
           I+E+ Q     + K  ++ +    +   +       ++ LD +   L  +  + L     
Sbjct: 2   IHEIKQN--GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 298 LQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRL-------LIAPI 350
           L+ L+L    L +   +  L  L  L L  + ++EL      +  L         +    
Sbjct: 60  LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL-LVGPSIETLHAANNNISRVSCSR 118

Query: 351 LSRLEELYIG 360
               + +Y+ 
Sbjct: 119 GQGKKNIYLA 128

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 23/165 (13%)

Query: 239 INELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQN 297
           I+E+ Q     + K  ++ +    +   +       ++ LD +   L  +  + L     
Sbjct: 2   IHEIKQNGN--RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 298 LQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRL-------LIAPI 350
           L+ L+L    L +   +  L  L  L L  + ++EL      +  L         +    
Sbjct: 60  LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL-LVGPSIETLHAANNNISRVSCSR 118

Query: 351 LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEI 395
               + +Y+  + I                  +    S++  L++
Sbjct: 119 GQGKKNIYLANNKI------------TMLRDLDEGCRSRVQYLDL 151

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 16/134 (11%), Positives = 43/134 (32%), Gaps = 8/134 (5%)

Query: 230 TAISLNNSNINELPQGFE---CPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLL 286
             + L  + I+ +           L++  +  +    +         +L+ LD +   L 
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA 204

Query: 287 ALPSSLGLLQNLQTLSLDYCELGDM-AIIGDLKKLVILALRGSDMK--ELVGEIGQLTQL 343
            +         +  +SL   +L  +   +   + L    LRG+      L     +  ++
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 344 RLLIAPILSRLEEL 357
           + +    + +L   
Sbjct: 265 QTVAKQTVKKLTGQ 278

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.7 bits (110), Expect = 3e-05
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 10/108 (9%)

Query: 248 CPQLKYFRIHNDHSLKIPDNFFT------GMTELRVLDFTRMHLLALPSSLGLLQNLQTL 301
              +      +   L +     T       +  +  LD +   L ALP +L  L+ L+ L
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL 491

Query: 302 SLDYCELGDMAIIGDLKKLVILALRG---SDMKELVGEIGQLTQLRLL 346
                 L ++  + +L +L  L L           +  +    +L LL
Sbjct: 492 QASDNALENVDGVANLPRLQELLLCNNRLQQSAA-IQPLVSCPRLVLL 538

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 41/200 (20%), Positives = 72/200 (36%), Gaps = 36/200 (18%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQG--FECPQLKYFRIHNDHSLKIPDNFFTGMTE 274
           L + P   +      I L+ + I+ +P      C  L    +H++   +I    FTG+  
Sbjct: 23  LQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 275 LRVLDFTR-MHLLALPSS-LGLLQNLQTLSLDYCELGDMA--IIGDLKKLVILALRGSDM 330
           L  LD +    L ++  +    L  L TL LD C L ++   +   L  L  L L+ + +
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141

Query: 331 KEL-VGEIGQLTQLRLL------IAPI-------LSRLEELYIGESPIEWGKVEGVDGER 376
           + L       L  L  L      I+ +       L  L+ L + ++ +            
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA----------- 190

Query: 377 RNASLHELNNLSKLTSLEIL 396
               +H  +    L  L  L
Sbjct: 191 ---HVHP-HAFRDLGRLMTL 206

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 32/146 (21%), Positives = 48/146 (32%), Gaps = 20/146 (13%)

Query: 233 SLNNSNINELPQG-FEC-PQLKYFRI-HNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP 289
            L+++ +  +    F     L+   +  N     +    F G+  L  L   R  L  L 
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 290 S-SLGLLQNLQTLSLDYCELGDMA--IIGDLKKLVILALRGSDMKELVGEI----GQLTQ 342
                 L  LQ L L    L  +      DL  L  L L G+ +  +          L +
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 343 LRL---LIAPI-------LSRLEELY 358
           L L    +A +       L RL  LY
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLY 207

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 21/183 (11%)

Query: 226 LKDCTAISLNNSN-INELPQG-FE-CPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTR 282
           L     I +  +N +  +    F+  P L+Y  I N     +PD       +  +LD   
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

Query: 283 -MHLLALPSSL--GLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIG- 338
            +++  +  +   GL      L L+            ++++   A  G+ + EL      
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNG---------IQEIHNSAFNGTQLDELNLSDNN 188

Query: 339 QLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDG-----ERRNASLHELNNLSKLTSL 393
            L +L   +    S    L I  + I      G++       R   +L +L  L KL +L
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVAL 248

Query: 394 EIL 396
              
Sbjct: 249 MEA 251

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 39/372 (10%), Positives = 109/372 (29%), Gaps = 42/372 (11%)

Query: 483 FPQLKRLEV-----VKNSNLL---CVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRG 534
           FP L+ L++         NL+            T ++     L+S+  R +   +     
Sbjct: 72  FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD- 130

Query: 535 PLAAESFCK-VKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDES 593
              A++    ++ ++++ C        L I    ++++++ +      E         + 
Sbjct: 131 -RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK------DGKW 183

Query: 594 SNSNTQVIELTQLTTLEL--CSLPQLTSFCTGDLHFEFPSLEKLKILECPQVKFKSTIHE 651
            +   Q    T L  L        +++      +     SL  +K+ +   ++       
Sbjct: 184 LHELAQ--HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241

Query: 652 STKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLE 711
           +       ++  C    + D     + +       +  +         +      A  + 
Sbjct: 242 AAN-----LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296

Query: 712 VLEIYGCDNLIN-LVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKM 770
            L++                  NL  +      G   +     A+   +LK+++I     
Sbjct: 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGL--EVLAQYCKQLKRLRIERGAD 354

Query: 771 ITEIVVDDDEEGDNYAANYEIVFSELKELRLS-------SLESLTSFCSVNNCAFKFPSL 823
              +  ++                EL+ + +        SLES+ ++             
Sbjct: 355 EQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK------NLCDF 408

Query: 824 ERLVVEDCPNMS 835
             ++++    ++
Sbjct: 409 RLVLLDREERIT 420

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 35/198 (17%), Positives = 61/198 (30%), Gaps = 32/198 (16%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQG--FECPQLKYFRIHNDHSLKIPDNFFTGMTE 274
             + P+  +  +   + L  + I  L Q      P L+   ++ +    +    F  +  
Sbjct: 23  FVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81

Query: 275 LRVLDFTRMHLLALPS-SLGLLQNLQTLSLDYCELGDMA--IIGDLKKLVILALRGSDMK 331
           LR L      L  +P      L NL  L +   ++  +   +  DL  L  L +  +D+ 
Sbjct: 82  LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 332 EL-VGEIGQLTQLRLL------IAPI-------LSRLEELYIGESPIEWGKVEGVDGERR 377
            +       L  L  L      +  I       L  L  L +    I             
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI------------N 189

Query: 378 NASLHELNNLSKLTSLEI 395
               +    L +L  LEI
Sbjct: 190 AIRDYSFKRLYRLKVLEI 207

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 29/156 (18%), Positives = 59/156 (37%), Gaps = 19/156 (12%)

Query: 230 TAISLNNSNINELPQG-FE-CPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLA 287
           T + ++ + I  L    F+    LK   + ++  + I    F+G+  L  L   + +L +
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166

Query: 288 LPS-SLGLLQNLQTLSLDYCELGDMA--IIGDLKKLVILALRGSDMKELVGEIG----QL 340
           +P+ +L  L  L  L L +  +  +       L +L +L +      + +         L
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226

Query: 341 TQLRL---LIAPI-------LSRLEELYIGESPIEW 366
           T L +    +  +       L  L  L +  +PI  
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 7e-05
 Identities = 28/176 (15%), Positives = 59/176 (33%), Gaps = 33/176 (18%)

Query: 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP 289
           T++  +NS+I ++    +   L      +++   +     +  T L  L      L  L 
Sbjct: 45  TSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD 101

Query: 290 SSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAP 349
             +  L  L  L+ D  +L  +  +     L  L    + + E+  ++   TQL  L   
Sbjct: 102 --VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCH 156

Query: 350 ILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN---------NLSKLTSLEIL 396
           +  ++ +L +                     L  L+         ++S+   L  L
Sbjct: 157 LNKKITKLDVTP----------------QTQLTTLDCSFNKITELDVSQNKLLNRL 196

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 33/176 (18%)

Query: 230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP 289
           T ++ +++ +  L       +L Y     +   K+     +    L  L+  R  L  + 
Sbjct: 88  TYLACDSNKLTNLDVT-PLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID 143

Query: 290 SSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIA- 348
             +     L  L     +      +    +L  L    + + EL  ++ Q   L  L   
Sbjct: 144 --VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCD 199

Query: 349 -------PI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEI 395
                   +    +L  L    + +                + ++  L++LT  + 
Sbjct: 200 TNNITKLDLNQNIQLTFLDCSSNKLT--------------EI-DVTPLTQLTYFDC 240

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 28/137 (20%), Positives = 48/137 (35%), Gaps = 8/137 (5%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQG-FE-CPQLKYFRIHNDHSLKIPDNFFTGMTE 274
               PD ++      + L+ + +  L    F   P+L+   +       I D  +  ++ 
Sbjct: 19  FYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 275 LRVLDFTRMHLLALPSSL-GLLQNLQTLSLDYCELGDMA--IIGDLKKLVILALRGSDMK 331
           L  L  T   + +L       L +LQ L      L  +    IG LK L  L +  + ++
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 332 EL--VGEIGQLTQLRLL 346
                     LT L  L
Sbjct: 138 SFKLPEYFSNLTNLEHL 154

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 29/172 (16%), Positives = 64/172 (37%), Gaps = 29/172 (16%)

Query: 234 LNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLG 293
              + IN++             +       +       ++ ++  +    ++ +L + + 
Sbjct: 4   QRPTPINQVFPDPGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-AGMQ 60

Query: 294 LLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLL------ 346
              NL+ L L + ++ D++ + DL KL  L++  + +K L G     L++L L       
Sbjct: 61  FFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRD 120

Query: 347 IAPI--LSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEIL 396
              +  L  LE L I  + ++                  +  L  L+ LE+L
Sbjct: 121 TDSLIHLKNLEILSIRNNKLK-----------------SIVMLGFLSKLEVL 155

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 37/250 (14%), Positives = 84/250 (33%), Gaps = 8/250 (3%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQG--FECPQLKYFRIHNDHSLKIPDNFFTGMTE 274
           L   P KD+ +  T ++++ + I+EL         +L+   I ++    +  + F    E
Sbjct: 12  LIHVP-KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE 70

Query: 275 LRVLDFTRMHLLALPSSLGLLQNLQTLSLDYC---ELGDMAIIGDLKKLVILALRGSDMK 331
           L  LD +   L+ +        NL+ L L +     L      G++ +L  L L  + ++
Sbjct: 71  LEYLDLSHNKLVKISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 332 ELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLT 391
           +          +  ++  +     E    E   ++           N   H + ++S  T
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 392 SLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNG 451
              + + + K +  D      L     L  +    +   + I   +   +     +    
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248

Query: 452 GHIMQLKGIK 461
                +  +K
Sbjct: 249 VWYFSISNVK 258

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 8/135 (5%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTE 274
           LT+ P  D+ KD T + L+ + +            +L    +      K+       +  
Sbjct: 22  LTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPV 78

Query: 275 LRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMA--IIGDLKKLVILALRGSDMKE 332
           L  LD +   L +LP     L  L  L + +  L  +    +  L +L  L L+G+++K 
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 333 L-VGEIGQLTQLRLL 346
           L  G +    +L  L
Sbjct: 139 LPPGLLTPTPKLEKL 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 29/142 (20%)

Query: 255 RIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAII 314
           RIH +   + P      + EL VLD  + +   +        NL+ LSL    L  ++ +
Sbjct: 13  RIHLELRNRTPAA----VREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNL 67

Query: 315 GDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDG 374
             L KL  L L  +          ++     ++A  L  L  L +  + ++         
Sbjct: 68  PKLPKLKKLELSEN----------RIFGGLDMLAEKLPNLTHLNLSGNKLK--------- 108

Query: 375 ERRNASLHELNNLSKLTSLEIL 396
                 +  L  L KL  L+ L
Sbjct: 109 -----DISTLEPLKKLECLKSL 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 234 LNNSNINELPQG-FE-CPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-- 289
           L++++++ L +  F     L+   ++N+H + +  N F  M +L+ L  ++  +   P  
Sbjct: 95  LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154

Query: 290 --SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALR 326
                  L  L  L L   +L  +    +  L   V   L 
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	878
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.89
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.86
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.85
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.81
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.78
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.77
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.76
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.76
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.75
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.74
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.73
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.73
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.73
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.71
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.71
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.71
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.7
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.69
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.68
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.68
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.67
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.66
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.66
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.66
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.65
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.64
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.64
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.64
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.64
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.62
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.62
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.59
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.58
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.58
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.57
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.57
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.56
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.54
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.53
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.53
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.53
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.52
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.51
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.5
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.49
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.49
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.48
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.47
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.47
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.47
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.46
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.45
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.45
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.45
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.44
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.43
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.42
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.42
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.41
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.4
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.39
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.38
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.36
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.35
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.35
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.35
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.34
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.33
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.33
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.32
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.31
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.26
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.26
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.25
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.25
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.25
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.24
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.22
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.2
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.2
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.19
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.19
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.18
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.18
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.12
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.96
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.95
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.63
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.54
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.36
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.36
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.35
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.32
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.28
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.98
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.81
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.7
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.57
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.55
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.49
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.49
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.29
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.56
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.51
2fna_A	357	Conserved hypothetical protein; structural genomic	96.48
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.28
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.71
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	95.33
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.15
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	90.0
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	88.4
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	87.62
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	87.03
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	85.06

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.1e-36  Score=366.16  Aligned_cols=470  Identities=15%  Similarity=0.066  Sum_probs=252.8

Q ss_pred             CCCcEEEeeCCCCCC----CCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCC-CCCc--cccCCCCC
Q 048809          227 KDCTAISLNNSNINE----LPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLL-ALPS--SLGLLQNL  298 (878)
Q Consensus       227 ~~lr~l~l~~~~~~~----l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~--~i~~L~~L  298 (878)
                      ..++.|+++++.+..    +++.+ .+++|+.++++.+.+..+|.. |+++++|++|+|++|.+. .+|.  .++++++|
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  128 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL  128 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchh-hccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence            467888888877654    44444 678888888887766556665 588999999999999885 4677  88999999


Q ss_pred             cEEEccCCCCCCc--cc-ccCcccCcEEEeeCCCcccchH-h---hcccccCccc----------ccc-cccCCcEEEcc
Q 048809          299 QTLSLDYCELGDM--AI-IGDLKKLVILALRGSDMKELVG-E---IGQLTQLRLL----------IAP-ILSRLEELYIG  360 (878)
Q Consensus       299 ~~L~L~~~~l~~l--~~-i~~L~~L~~L~l~~~~l~~lp~-~---i~~L~~L~~L----------ip~-~l~~L~~L~l~  360 (878)
                      ++|+|++|.+...  .. ++++++|++|++++|.++..+. .   ++++++|++|          +|. .+++|+.|++.
T Consensus       129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls  208 (768)
T 3rgz_A          129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS  208 (768)
T ss_dssp             CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECC
T ss_pred             CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECc
Confidence            9999999986532  33 3788999999999998876543 3   6788888888          121 77889999998


Q ss_pred             CCCCCccccccccccccccCcccccCCCCCCEEEeecCCCC-CCCcchhcccCCceEEEEecccccccccchhhhhhhhh
Q 048809          361 ESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEK-TLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRL  439 (878)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  439 (878)
                      +|.+.            .. +..++++++|++|++++|... .+|..+..+++|+.|+++.+........          
T Consensus       209 ~n~l~------------~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----------  265 (768)
T 3rgz_A          209 SNNFS------------TG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP----------  265 (768)
T ss_dssp             SSCCC------------SC-CCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC----------
T ss_pred             CCcCC------------CC-CcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc----------
Confidence            88765            11 223788889999999988865 4567777888888888864432111000          


Q ss_pred             hhccCCccccchhHHhhccccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccce
Q 048809          440 MVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLES  519 (878)
Q Consensus       440 ~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~  519 (878)
                                     ..+++|++|++.++.....+...+ ...+++|++|++.++.-...++.       ....+++|+.
T Consensus       266 ---------------~~l~~L~~L~L~~n~l~~~ip~~~-~~~~~~L~~L~Ls~n~l~~~~p~-------~~~~l~~L~~  322 (768)
T 3rgz_A          266 ---------------LPLKSLQYLSLAENKFTGEIPDFL-SGACDTLTGLDLSGNHFYGAVPP-------FFGSCSLLES  322 (768)
T ss_dssp             ---------------CCCTTCCEEECCSSEEEESCCCCS-CTTCTTCSEEECCSSEEEECCCG-------GGGGCTTCCE
T ss_pred             ---------------cccCCCCEEECcCCccCCccCHHH-HhhcCcCCEEECcCCcCCCccch-------HHhcCCCccE
Confidence                           024556666666554322222222 12235666666655431111110       3344556666


Q ss_pred             eeccccccccceecCCCCccccCCccEEEeecCCCcc-cccchhhhhhcc-CccEEEEecCCcchhhhcccccccccCCC
Q 048809          520 LLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLK-NVFPLVIGRGLQ-QLQSIEVTGCQNLEVIFAAERGDESSNSN  597 (878)
Q Consensus       520 L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~-~l~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  597 (878)
                      |+++++.-...++..  .+..+++|+.|++.+| ++. .+|.  .+..++ +|++|++++|.....++.....       
T Consensus       323 L~L~~n~l~~~ip~~--~l~~l~~L~~L~Ls~n-~l~~~~p~--~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~-------  390 (768)
T 3rgz_A          323 LALSSNNFSGELPMD--TLLKMRGLKVLDLSFN-EFSGELPE--SLTNLSASLLTLDLSSNNFSGPILPNLCQ-------  390 (768)
T ss_dssp             EECCSSEEEEECCHH--HHTTCTTCCEEECCSS-EEEECCCT--THHHHTTTCSEEECCSSEEEEECCTTTTC-------
T ss_pred             EECCCCcccCcCCHH--HHhcCCCCCEEeCcCC-ccCccccH--HHHhhhcCCcEEEccCCCcCCCcChhhhh-------
Confidence            666554321122110  1334555666666554 232 2222  223343 5555655554332222211110       


Q ss_pred             CccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEeccccccccee
Q 048809          598 TQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELF  676 (878)
Q Consensus       598 ~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~  676 (878)
                         ..+++|+.|++++|.....++.  ....+++|++|++++|..-. +|..+ ..    +++|+.|++++|.. ...+.
T Consensus       391 ---~~~~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~----l~~L~~L~L~~n~l-~~~~p  459 (768)
T 3rgz_A          391 ---NPKNTLQELYLQNNGFTGKIPP--TLSNCSELVSLHLSFNYLSGTIPSSL-GS----LSKLRDLKLWLNML-EGEIP  459 (768)
T ss_dssp             ---STTCCCCEEECCSSEEEEECCG--GGGGCTTCCEEECCSSEEESCCCGGG-GG----CTTCCEEECCSSCC-CSCCC
T ss_pred             ---cccCCccEEECCCCccccccCH--HHhcCCCCCEEECcCCcccCcccHHH-hc----CCCCCEEECCCCcc-cCcCC
Confidence               0134455555555432222222  23344555555555532111 33222 22    45555555555543 22222


Q ss_pred             eeccccccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhh
Q 048809          677 ETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKS  756 (878)
Q Consensus       677 ~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~  756 (878)
                      .......+++.++++++.- ....+..+..+++|++|++++|.....+|..++.+++|+.|++++| .+....+ ..+..
T Consensus       460 ~~~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p-~~l~~  536 (768)
T 3rgz_A          460 QELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN-SFSGNIP-AELGD  536 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCEEECC-GGGGG
T ss_pred             HHHcCCCCceEEEecCCcc-cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC-cccCcCC-HHHcC
Confidence            2222233444444444322 2222333444555555555555444444444455555555555553 3332222 22344


Q ss_pred             hccceEEEEcccc
Q 048809          757 LVRLKQMKIFHCK  769 (878)
Q Consensus       757 l~~L~~L~i~~C~  769 (878)
                      +++|+.|++++|+
T Consensus       537 l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          537 CRSLIWLDLNTNL  549 (768)
T ss_dssp             CTTCCEEECCSSE
T ss_pred             CCCCCEEECCCCc
Confidence            5555555555443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.4e-36  Score=361.74  Aligned_cols=123  Identities=9%  Similarity=0.007  Sum_probs=70.8

Q ss_pred             ccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccccccccccccccccccccccccccccccchhhccccCccc
Q 048809          728 STSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESL  807 (878)
Q Consensus       728 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L  807 (878)
                      +..+++|+.|++++ ++++...| ..++++++|+.|+++++.--..+|..            ...+++|+.|+++++.--
T Consensus       628 ~~~l~~L~~LdLs~-N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~------------l~~L~~L~~LdLs~N~l~  693 (768)
T 3rgz_A          628 FDNNGSMMFLDMSY-NMLSGYIP-KEIGSMPYLFILNLGHNDISGSIPDE------------VGDLRGLNILDLSSNKLD  693 (768)
T ss_dssp             CSSSBCCCEEECCS-SCCBSCCC-GGGGGCTTCCEEECCSSCCCSCCCGG------------GGGCTTCCEEECCSSCCE
T ss_pred             hhccccccEEECcC-CcccccCC-HHHhccccCCEEeCcCCccCCCCChH------------HhCCCCCCEEECCCCccc
Confidence            34457788888887 45655434 33467888888888876533355542            335788888888887544


Q ss_pred             ceeeccccceeEcCCcceEEEcCCCCcccccCCCccCCCcceeeccc-----------c--CccccccccCChh
Q 048809          808 TSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPNLRKVQLKQ-----------W--DDEKRWAWKDDLN  868 (878)
Q Consensus       808 ~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~~~~L~~l~i~~-----------c--~~~~~w~~~~~~~  868 (878)
                      ..+|..   +..+++|++|++++|+--..+|.+++ ..++....+.+           |  ..+.+|+...+.+
T Consensus       694 g~ip~~---l~~l~~L~~L~ls~N~l~g~iP~~~~-~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~  763 (768)
T 3rgz_A          694 GRIPQA---MSALTMLTEIDLSNNNLSGPIPEMGQ-FETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSH  763 (768)
T ss_dssp             ECCCGG---GGGCCCCSEEECCSSEEEEECCSSSS-GGGSCGGGGCSCTEEESTTSCCCCSCC-----------
T ss_pred             CcCChH---HhCCCCCCEEECcCCcccccCCCchh-hccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcc
Confidence            467766   66788888888888876666776543 33333333322           3  4566777665543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.1e-34  Score=340.91  Aligned_cols=130  Identities=23%  Similarity=0.301  Sum_probs=110.8

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-Cccc
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSL  292 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i  292 (878)
                      .....|. .+++++++|++++|.++.++.. + ++++|++|++++|.+..++...|.++++||+|+|++|.++.+ |..|
T Consensus        22 ~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  100 (606)
T 3vq2_A           22 KLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF  100 (606)
T ss_dssp             CCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS
T ss_pred             CcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc
Confidence            3444443 4678899999999999988763 3 899999999999999988877789999999999999999877 7889


Q ss_pred             cCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcc--cchHhhcccccCccc
Q 048809          293 GLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMK--ELVGEIGQLTQLRLL  346 (878)
Q Consensus       293 ~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L  346 (878)
                      +++++|++|++++|.++.+  ..++++++|++|++++|.+.  .+|..++++++|++|
T Consensus       101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L  158 (606)
T 3vq2_A          101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV  158 (606)
T ss_dssp             TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred             CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence            9999999999999998765  67999999999999999887  478888888776666

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.3e-33  Score=336.52  Aligned_cols=556  Identities=15%  Similarity=0.120  Sum_probs=350.3

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cc
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SL  292 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i  292 (878)
                      .....|. .++.++++|++++|.++.++.. + .+++|++|++++|.+..++.+.|.++++|++|+|++|.+..+|. .|
T Consensus        15 ~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~   93 (680)
T 1ziw_A           15 KLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF   93 (680)
T ss_dssp             CCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTT
T ss_pred             Ccccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhh
Confidence            3344443 4568899999999999998864 3 78999999999999888887788999999999999999999986 59


Q ss_pred             cCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccch-HhhcccccCccc---------ccc------cccCC
Q 048809          293 GLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLL---------IAP------ILSRL  354 (878)
Q Consensus       293 ~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L---------ip~------~l~~L  354 (878)
                      +++++|++|++++|.++.+  ..++++++|++|++++|.++..+ ..++++++|++|         ++.      .+++|
T Consensus        94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L  173 (680)
T 1ziw_A           94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL  173 (680)
T ss_dssp             TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred             ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccc
Confidence            9999999999999998865  57999999999999999887754 457778877777         111      23567


Q ss_pred             cEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCcchh------cccCCceEEEEecccccccc
Q 048809          355 EELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLS------FFKMLQRYRILIGSQWTWDY  428 (878)
Q Consensus       355 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~------~l~~L~~L~l~~~~~~~~~~  428 (878)
                      +.|++.+|.+.            ...+..+..+.+|+.|++.++...  +....      ...+|+.|++..+...... 
T Consensus       174 ~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~l~~~~l~--~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~-  238 (680)
T 1ziw_A          174 KKLELSSNQIK------------EFSPGCFHAIGRLFGLFLNNVQLG--PSLTEKLCLELANTSIRNLSLSNSQLSTTS-  238 (680)
T ss_dssp             SEEECTTCCCC------------CBCTTGGGGSSEECEEECTTCCCH--HHHHHHHHHHHTTSCCCEEECTTSCCCEEC-
T ss_pred             cEEECCCCccc------------ccChhhhhhhhhhhhhhccccccC--hhhHHHHHHHhhhccccEEEccCCcccccC-
Confidence            77777766554            122334445555555555544321  00000      1245666665322111000 


Q ss_pred             cchhhhhhhhhhhccCCccccchhHHhhc--cccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccc
Q 048809          429 ISSEISEIFRLMVASGANICLNGGHIMQL--KGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDR  506 (878)
Q Consensus       429 ~~~~~~~~l~~~l~l~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~  506 (878)
                                            ......+  ++|+.|+++++.........+  ..+++|++|++.++. +..+...   
T Consensus       239 ----------------------~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~-l~~~~~~---  290 (680)
T 1ziw_A          239 ----------------------NTTFLGLKWTNLTMLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNN-IQHLFSH---  290 (680)
T ss_dssp             ----------------------TTTTGGGGGSCCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSCC-BSEECTT---
T ss_pred             ----------------------hhHhhccCcCCCCEEECCCCCcCccCcccc--cCcccccEeeCCCCc-cCccChh---
Confidence                                  0001112  348888887765432211222  457788888887764 3333211   


Q ss_pred             cccccCcccccceeecccccccc-----ceec-CCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCc
Q 048809          507 ATALTTAFPVLESLLLRHLSNLE-----KICR-GPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQN  580 (878)
Q Consensus       507 ~~~~~~~~~~L~~L~L~~~~~L~-----~~~~-~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~  580 (878)
                         ....+++|+.|++.++..-.     .++. ....+..+++|+.|++.++ .+..+++. .+.++++|++|++++|..
T Consensus       291 ---~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~~  365 (680)
T 1ziw_A          291 ---SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSN-MFTGLINLKYLSLSNSFT  365 (680)
T ss_dssp             ---TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTT-TTTTCTTCCEEECTTCBS
T ss_pred             ---hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChh-HhccccCCcEEECCCCch
Confidence               44567788888887532111     1100 1113456788888888875 55555442 456778888888887642


Q ss_pred             -chhhhcccccccccCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-cccccccccccccc
Q 048809          581 -LEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFH  658 (878)
Q Consensus       581 -l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~  658 (878)
                       +..++.....         ....++|+.|+++++. ++.+... ....+++|+.|++++|.... +|...+.+    ++
T Consensus       366 ~~~~l~~~~f~---------~~~~~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~----l~  430 (680)
T 1ziw_A          366 SLRTLTNETFV---------SLAHSPLHILNLTKNK-ISKIESD-AFSWLGHLEVLDLGLNEIGQELTGQEWRG----LE  430 (680)
T ss_dssp             CCCEECTTTTG---------GGTTSCCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCCEEECCSGGGTT----CT
T ss_pred             hhhhcchhhhc---------ccccCcCceEECCCCC-CCeEChh-hhhCCCCCCEEeCCCCcCccccCcccccC----cc
Confidence             2222211100         0013577788887764 4444331 34467778888888755433 66555555    77


Q ss_pred             ceeEEEEecccccccceeeeccccccceeeccCCCCch-hhhccccccccCCccEEEEccCCCcccccC-cccccCCCcE
Q 048809          659 TIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDL-KQILKQESSHANNLEVLEIYGCDNLINLVP-SSTSFQNLTT  736 (878)
Q Consensus       659 ~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l-~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~  736 (878)
                      +|++|++++|.. ...........+.++.++++.+.-- ....+..+..+++|+.|++++|. ++.+++ .+..+++|+.
T Consensus       431 ~L~~L~Ls~n~l-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~  508 (680)
T 1ziw_A          431 NIFEIYLSYNKY-LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEI  508 (680)
T ss_dssp             TCCEEECCSCSE-EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             cccEEecCCCCc-ceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCE
Confidence            888888887764 1111111122345666666554310 01224456778888999988876 444544 3677888999


Q ss_pred             EEecccCCceEeech-------hhhhhhccceEEEEccccccccccccccccccccccccccccccchhhccccCcccce
Q 048809          737 VAVDFCYGMINILTS-------STAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTS  809 (878)
Q Consensus       737 L~i~~c~~l~~l~~~-------~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~  809 (878)
                      |++++ +.++.+...       ..+.++++|+.|+++++ .++.++..           ....+++|+.|+++++ +++.
T Consensus       509 L~Ls~-N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~-----------~~~~l~~L~~L~Ls~N-~l~~  574 (680)
T 1ziw_A          509 LDLQH-NNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVE-----------VFKDLFELKIIDLGLN-NLNT  574 (680)
T ss_dssp             EECCS-SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTT-----------TTTTCTTCCEEECCSS-CCCC
T ss_pred             EeCCC-CCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHH-----------HcccccCcceeECCCC-CCCc
Confidence            98887 456554211       23577888999999875 46666642           1234788899999764 6888


Q ss_pred             eeccccceeEcCCcceEEEcCCCCcccccCCCc--cCCCcceeeccc
Q 048809          810 FCSVNNCAFKFPSLERLVVEDCPNMSIFSGGEL--STPNLRKVQLKQ  854 (878)
Q Consensus       810 l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~--~~~~L~~l~i~~  854 (878)
                      +|..  ....+++|+.|++++| .++.+|....  .+++|+.+++++
T Consensus       575 l~~~--~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~  618 (680)
T 1ziw_A          575 LPAS--VFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRF  618 (680)
T ss_dssp             CCTT--TTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTT
T ss_pred             CCHh--HhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccC
Confidence            8765  2346788999999888 6777765432  468899999877

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.6e-33  Score=331.04  Aligned_cols=552  Identities=16%  Similarity=0.156  Sum_probs=376.4

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCCC
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCEL  308 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~l  308 (878)
                      +.++.+++.++.+|..+. +++++|++++|.+..++...|.++++|++|+|++|.+..+ |..++++++|++|++++|.+
T Consensus         7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l   85 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL   85 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred             CeeECCCCCccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence            578889999999997664 7999999999999999988889999999999999999876 67789999999999999999


Q ss_pred             CCc--ccccCcccCcEEEeeCCCcccch-HhhcccccCccc----------ccc---cccCCcEEEccCCCCCccccccc
Q 048809          309 GDM--AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLL----------IAP---ILSRLEELYIGESPIEWGKVEGV  372 (878)
Q Consensus       309 ~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L----------ip~---~l~~L~~L~l~~~~~~~~~~~~~  372 (878)
                      +.+  ..++++++|++|++++|.++.+| ..++++++|++|          .|.   ++++|+.|++.+|.+.       
T Consensus        86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------  158 (680)
T 1ziw_A           86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-------  158 (680)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-------
T ss_pred             CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-------
Confidence            876  36999999999999999998887 458888777766          111   4455555555555443       


Q ss_pred             cccccccCcccc--cCCCCCCEEEeecCCCCCCC-cchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCcccc
Q 048809          373 DGERRNASLHEL--NNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICL  449 (878)
Q Consensus       373 ~~~~~~~~~~~L--~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~  449 (878)
                           ......+  ..+++|+.|++++|....++ ..+..+.+|+.+.+.....      .    ..            .
T Consensus       159 -----~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l------~----~~------------~  211 (680)
T 1ziw_A          159 -----ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL------G----PS------------L  211 (680)
T ss_dssp             -----CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC------H----HH------------H
T ss_pred             -----ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc------C----hh------------h
Confidence                 0111111  13345555665555544332 2333444444444321000      0    00            0


Q ss_pred             chhHH--hhccccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeecccccc
Q 048809          450 NGGHI--MQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSN  527 (878)
Q Consensus       450 ~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  527 (878)
                      ...+.  ...++|++|+++++.........+..-..++|++|+++++. +..++..      ....+++|+.|+++++ .
T Consensus       212 ~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~------~~~~l~~L~~L~L~~n-~  283 (680)
T 1ziw_A          212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGND------SFAWLPQLEYFFLEYN-N  283 (680)
T ss_dssp             HHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTT------TTTTCTTCCEEECCSC-C
T ss_pred             HHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccCcc------cccCcccccEeeCCCC-c
Confidence            00000  02378999999887643332222221112469999999874 4443221      4567899999999985 4


Q ss_pred             ccceecCCCCccccCCccEEEeecCCC--------cccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCc
Q 048809          528 LEKICRGPLAAESFCKVKDIRVEWCDK--------LKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQ  599 (878)
Q Consensus       528 L~~~~~~~~~~~~l~~L~~L~l~~c~~--------L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~  599 (878)
                      +....  +..+..+++|+.|++.++..        +..+... .+..+++|++|+++++......+...           
T Consensus       284 l~~~~--~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-----------  349 (680)
T 1ziw_A          284 IQHLF--SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF-SFQWLKCLEHLNMEDNDIPGIKSNMF-----------  349 (680)
T ss_dssp             BSEEC--TTTTTTCTTCCEEECTTCBCCC------CCEECTT-TTTTCTTCCEEECCSCCBCCCCTTTT-----------
T ss_pred             cCccC--hhhhcCCCCccEEeccchhhhcccccccccccChh-hcccCCCCCEEECCCCccCCCChhHh-----------
Confidence            44432  22456789999999987531        1122111 34678999999999975433222222           


Q ss_pred             cccccccceeecccCC-CcceecCCCcc-cccCCcceEEEecCCCccccccccccccccccceeEEEEeccccccccee-
Q 048809          600 VIELTQLTTLELCSLP-QLTSFCTGDLH-FEFPSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELF-  676 (878)
Q Consensus       600 ~~~~~~L~~L~L~~c~-~l~~~~~~~~~-~~~~~L~~L~l~~C~~l~lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~-  676 (878)
                       ..+++|+.|+++++. .+..++..... ...++|+.|++++|..-.++...+..    +++|+.|++++|.. ...+. 
T Consensus       350 -~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~----l~~L~~L~L~~N~l-~~~~~~  423 (680)
T 1ziw_A          350 -TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW----LGHLEVLDLGLNEI-GQELTG  423 (680)
T ss_dssp             -TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT----CTTCCEEECCSSCC-EEECCS
T ss_pred             -ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC----CCCCCEEeCCCCcC-ccccCc
Confidence             348999999999875 24444432111 12368999999996543455555566    99999999999985 22221 


Q ss_pred             eeccccccceeeccCCCCchhhhccccccccCCccEEEEccCCC--cccccCcccccCCCcEEEecccCCceEeechhhh
Q 048809          677 ETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDN--LINLVPSSTSFQNLTTVAVDFCYGMINILTSSTA  754 (878)
Q Consensus       677 ~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~--l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~  754 (878)
                      .......+++.++++.+. +..+....+..+++|+.|++++|..  +...|..+..+++|+.|++++ ++++.++ +..+
T Consensus       424 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~-N~l~~i~-~~~~  500 (680)
T 1ziw_A          424 QEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN-NNIANIN-DDML  500 (680)
T ss_dssp             GGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS-SCCCCCC-TTTT
T ss_pred             ccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC-CCCCcCC-hhhh
Confidence            122344678888888876 5566677788899999999998764  356677788999999999998 5787764 4556


Q ss_pred             hhhccceEEEEccccccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCc
Q 048809          755 KSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNM  834 (878)
Q Consensus       755 ~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L  834 (878)
                      .++++|+.|+++++ .++.++......+.   ......+++|+.|+++++ .++.+|..  ....+++|++|+++++ ++
T Consensus       501 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~---~~~~~~l~~L~~L~L~~N-~l~~i~~~--~~~~l~~L~~L~Ls~N-~l  572 (680)
T 1ziw_A          501 EGLEKLEILDLQHN-NLARLWKHANPGGP---IYFLKGLSHLHILNLESN-GFDEIPVE--VFKDLFELKIIDLGLN-NL  572 (680)
T ss_dssp             TTCTTCCEEECCSS-CCGGGGSTTSTTSC---CCTTTTCTTCCEEECCSS-CCCCCCTT--TTTTCTTCCEEECCSS-CC
T ss_pred             ccccccCEEeCCCC-CccccchhhccCCc---chhhcCCCCCCEEECCCC-CCCCCCHH--HcccccCcceeECCCC-CC
Confidence            78999999999985 46666432100000   012345899999999986 68888864  2457899999999876 78


Q ss_pred             ccccCCC-ccCCCcceeecccc
Q 048809          835 SIFSGGE-LSTPNLRKVQLKQW  855 (878)
Q Consensus       835 ~~lp~~~-~~~~~L~~l~i~~c  855 (878)
                      +.+|.+. ..+++|+.|+++++
T Consensus       573 ~~l~~~~~~~l~~L~~L~L~~N  594 (680)
T 1ziw_A          573 NTLPASVFNNQVSLKSLNLQKN  594 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTS
T ss_pred             CcCCHhHhCCCCCCCEEECCCC
Confidence            8898764 56899999999975

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.5e-33  Score=331.41  Aligned_cols=510  Identities=15%  Similarity=0.131  Sum_probs=309.7

Q ss_pred             cccCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcE
Q 048809          224 DVLKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQT  300 (878)
Q Consensus       224 ~~~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~  300 (878)
                      .+++.+++|++++|.++.+++ .+ .+++|++|++++|.+..++...|.++++|++|+|++|.+..+ |..|+.+++|++
T Consensus        30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  109 (606)
T 3t6q_A           30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH  109 (606)
T ss_dssp             TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred             CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence            355667777777777776643 33 677777777777777666555567777777777777777654 566777777777


Q ss_pred             EEccCCCCCCc--ccccCcccCcEEEeeCCCcccch-HhhcccccCcccccccccCCcEEEccCCCCCcccccccccccc
Q 048809          301 LSLDYCELGDM--AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERR  377 (878)
Q Consensus       301 L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  377 (878)
                      |++++|.++.+  ..++++++|++|++++|.+..++ ..+.           .+++|+.|++.+|.+.            
T Consensus       110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----------~l~~L~~L~L~~n~l~------------  166 (606)
T 3t6q_A          110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF-----------PTEKLKVLDFQNNAIH------------  166 (606)
T ss_dssp             EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-----------CCTTCCEEECCSSCCC------------
T ss_pred             eeccccCcccCCcchhccCCcccEEECCCCcccccCccccc-----------CCcccCEEEcccCccc------------
Confidence            77777777654  56777777777777777666542 1122           2345667777777665            


Q ss_pred             ccCcccccCCCCCC--EEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHh
Q 048809          378 NASLHELNNLSKLT--SLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIM  455 (878)
Q Consensus       378 ~~~~~~L~~l~~L~--~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~  455 (878)
                      ......++.+++|+  .|++++|....++.......+|+.|++..+..         +..                 ...
T Consensus       167 ~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~---------~~~-----------------~~~  220 (606)
T 3t6q_A          167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN---------LLV-----------------IFK  220 (606)
T ss_dssp             EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC---------HHH-----------------HHH
T ss_pred             ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchh---------HHH-----------------Hhh
Confidence            23345667777777  77777777766655544555666666532110         000                 011


Q ss_pred             hcc--ccceEEecCcCCcccc-cccCcCCCC--CCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccc
Q 048809          456 QLK--GIKDLCLGGSLDMKSV-LYGSDGEGF--PQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEK  530 (878)
Q Consensus       456 ~l~--~L~~L~l~~~~~~~~~-~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~  530 (878)
                      .+.  .++.+.+..+...... ...-....+  .+|++|++.++. +..++..      ....+++|+.|+++++ .++.
T Consensus       221 ~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~------~~~~l~~L~~L~l~~n-~l~~  292 (606)
T 3t6q_A          221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSN------TFHCFSGLQELDLTAT-HLSE  292 (606)
T ss_dssp             HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTT------TTTTCTTCSEEECTTS-CCSC
T ss_pred             hccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHH------HhccccCCCEEeccCC-ccCC
Confidence            122  2233333333222110 000000111  267888887763 3333211      3566888999999885 4555


Q ss_pred             eecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceee
Q 048809          531 ICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLE  610 (878)
Q Consensus       531 ~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  610 (878)
                      ++   ..+..+++|+.|++.+| .+..+++. .+.++++|++|++++|.....++...           +..+++|+.|+
T Consensus       293 lp---~~l~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~-----------~~~l~~L~~L~  356 (606)
T 3t6q_A          293 LP---SGLVGLSTLKKLVLSAN-KFENLCQI-SASNFPSLTHLSIKGNTKRLELGTGC-----------LENLENLRELD  356 (606)
T ss_dssp             CC---SSCCSCTTCCEEECTTC-CCSBGGGG-CGGGCTTCSEEECCSCSSCCBCCSST-----------TTTCTTCCEEE
T ss_pred             CC---hhhcccccCCEEECccC-CcCcCchh-hhhccCcCCEEECCCCCcccccchhh-----------hhccCcCCEEE
Confidence            53   23567888999999886 55555442 45788899999998876544444321           22488899999


Q ss_pred             cccCCCcceec-CCCcccccCCcceEEEecCCCccccccccccccccccceeEEEEecccccccceeeeccccccceeec
Q 048809          611 LCSLPQLTSFC-TGDLHFEFPSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKG  689 (878)
Q Consensus       611 L~~c~~l~~~~-~~~~~~~~~~L~~L~l~~C~~l~lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~  689 (878)
                      ++++. ++... .......+++|++|++++|....++...+..    +++|+.|++++|... .                
T Consensus       357 l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~L~l~~n~l~-~----------------  414 (606)
T 3t6q_A          357 LSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE----CPQLELLDLAFTRLK-V----------------  414 (606)
T ss_dssp             CCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT----CTTCSEEECTTCCEE-C----------------
T ss_pred             CCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC----CccCCeEECCCCcCC-C----------------
Confidence            98864 44432 1123557888999999886433354445555    888999999888740 0                


Q ss_pred             cCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceE--eechhhhhhhccceEEEEcc
Q 048809          690 INFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMIN--ILTSSTAKSLVRLKQMKIFH  767 (878)
Q Consensus       690 l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~--l~~~~~~~~l~~L~~L~i~~  767 (878)
                              ..+...+..+++|++|++++|......+..+..+++|++|++++|. ++.  ++....+..+++|+.|++++
T Consensus       415 --------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~  485 (606)
T 3t6q_A          415 --------KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSF  485 (606)
T ss_dssp             --------CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTT
T ss_pred             --------cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCC
Confidence                    0112234556778888887776544445556677788888887753 332  22224566777888888877


Q ss_pred             ccccccccccccccccccccccccccccchhhccccCccccee-eccccceeEcCCcceEEEcCCCCcccccCCCccCCC
Q 048809          768 CKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSF-CSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTPN  846 (878)
Q Consensus       768 C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l-~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~~~~  846 (878)
                      |. ++.++..           ....+++|+.|+++++. ++.. |..   +..+++| +|++++|.--...|.....+++
T Consensus       486 n~-l~~~~~~-----------~~~~l~~L~~L~Ls~N~-l~~~~~~~---l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~  548 (606)
T 3t6q_A          486 CD-LSSIDQH-----------AFTSLKMMNHVDLSHNR-LTSSSIEA---LSHLKGI-YLNLASNHISIILPSLLPILSQ  548 (606)
T ss_dssp             SC-CCEECTT-----------TTTTCTTCCEEECCSSC-CCGGGGGG---GTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred             Cc-cCccChh-----------hhccccCCCEEECCCCc-cCcCChhH---hCccccc-EEECcCCcccccCHhhcccCCC
Confidence            64 4444321           22346778888887764 4433 333   4566777 7787777433333333345677


Q ss_pred             cceeeccc
Q 048809          847 LRKVQLKQ  854 (878)
Q Consensus       847 L~~l~i~~  854 (878)
                      |+++++++
T Consensus       549 L~~L~l~~  556 (606)
T 3t6q_A          549 QRTINLRQ  556 (606)
T ss_dssp             SSEEECTT
T ss_pred             CCEEeCCC
Confidence            78888876

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-32  Score=323.55  Aligned_cols=492  Identities=16%  Similarity=0.137  Sum_probs=344.4

Q ss_pred             ccCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEE
Q 048809          225 VLKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTL  301 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L  301 (878)
                      ...++++|++++|.+..+.+ .+ .+++|++|++++|.+..++...|.++++|++|++++|.+..+ |..++++++|++|
T Consensus        55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L  134 (606)
T 3t6q_A           55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL  134 (606)
T ss_dssp             TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred             cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEE
Confidence            46789999999999988744 34 899999999999998888777789999999999999999987 6889999999999


Q ss_pred             EccCCCCCCc--ccccCcccCcEEEeeCCCcccc-hHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccc
Q 048809          302 SLDYCELGDM--AIIGDLKKLVILALRGSDMKEL-VGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRN  378 (878)
Q Consensus       302 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  378 (878)
                      ++++|.++.+  +.+..+++|++|++++|.++.+ |..++.+.+|+.+         .|++.+|.+..            
T Consensus       135 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l---------~L~l~~n~l~~------------  193 (606)
T 3t6q_A          135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL---------SLNLNGNDIAG------------  193 (606)
T ss_dssp             ECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE---------EEECTTCCCCE------------
T ss_pred             ECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccccee---------EEecCCCccCc------------
Confidence            9999998864  6677799999999999999887 4557877655532         57888776651            


Q ss_pred             cCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhc-
Q 048809          379 ASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQL-  457 (878)
Q Consensus       379 ~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l-  457 (878)
                      . ........+|+.|+++++.  .++..+..+.++....+..........                  ..+.+.....+ 
T Consensus       194 ~-~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~~------------------~~i~~~~~~~l~  252 (606)
T 3t6q_A          194 I-EPGAFDSAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMDD------------------EDISPAVFEGLC  252 (606)
T ss_dssp             E-CTTTTTTCEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCTTSCC------------------CCCCGGGGGGGG
T ss_pred             c-ChhHhhhccccccccCCch--hHHHHhhhccccchhheechhhccccc------------------cccChhHhchhh
Confidence            1 1222233578889888775  344444455555554443222111100                  00111111112 


Q ss_pred             -cccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCC
Q 048809          458 -KGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPL  536 (878)
Q Consensus       458 -~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~  536 (878)
                       .+++.|++.++... .+.+.. ...+++|++|++.++. +..++.       ....+++|+.|+++++. ++.+.  +.
T Consensus       253 ~~~L~~L~l~~n~l~-~~~~~~-~~~l~~L~~L~l~~n~-l~~lp~-------~l~~l~~L~~L~l~~n~-l~~~~--~~  319 (606)
T 3t6q_A          253 EMSVESINLQKHYFF-NISSNT-FHCFSGLQELDLTATH-LSELPS-------GLVGLSTLKKLVLSANK-FENLC--QI  319 (606)
T ss_dssp             GSEEEEEECTTCCCS-SCCTTT-TTTCTTCSEEECTTSC-CSCCCS-------SCCSCTTCCEEECTTCC-CSBGG--GG
T ss_pred             cCceeEEEeecCccC-ccCHHH-hccccCCCEEeccCCc-cCCCCh-------hhcccccCCEEECccCC-cCcCc--hh
Confidence             27888999877543 322221 2468999999999874 444432       45678999999999863 44332  22


Q ss_pred             CccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhh--hcccccccccCCCCccccccccceeecccC
Q 048809          537 AAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVI--FAAERGDESSNSNTQVIELTQLTTLELCSL  614 (878)
Q Consensus       537 ~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c  614 (878)
                      .+..+++|+.|++.+|.....++. ..+..+++|++|+++++......  +..            +..+++|+.|+++++
T Consensus       320 ~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------~~~l~~L~~L~l~~n  386 (606)
T 3t6q_A          320 SASNFPSLTHLSIKGNTKRLELGT-GCLENLENLRELDLSHDDIETSDCCNLQ------------LRNLSHLQSLNLSYN  386 (606)
T ss_dssp             CGGGCTTCSEEECCSCSSCCBCCS-STTTTCTTCCEEECCSSCCCEEEESTTT------------TTTCTTCCEEECCSC
T ss_pred             hhhccCcCCEEECCCCCcccccch-hhhhccCcCCEEECCCCccccccCcchh------------cccCCCCCEEECCCC
Confidence            457789999999999755445544 24578999999999997543222  222            234899999999997


Q ss_pred             CCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeeccccccceeeccCCC
Q 048809          615 PQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFH  693 (878)
Q Consensus       615 ~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~  693 (878)
                      . +..++.. ....+++|++|++++|..-. .|...+..    +++|+.|++++|..                       
T Consensus       387 ~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----l~~L~~L~l~~n~l-----------------------  437 (606)
T 3t6q_A          387 E-PLSLKTE-AFKECPQLELLDLAFTRLKVKDAQSPFQN----LHLLKVLNLSHSLL-----------------------  437 (606)
T ss_dssp             S-CEEECTT-TTTTCTTCSEEECTTCCEECCTTCCTTTT----CTTCCEEECTTCCC-----------------------
T ss_pred             c-CCcCCHH-HhcCCccCCeEECCCCcCCCcccchhhhC----cccCCEEECCCCcc-----------------------
Confidence            4 4444332 34578999999999965444 55555666    99999999999974                       


Q ss_pred             CchhhhccccccccCCccEEEEccCCCcccc---cCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccccc
Q 048809          694 PDLKQILKQESSHANNLEVLEIYGCDNLINL---VPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKM  770 (878)
Q Consensus       694 ~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l---~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~  770 (878)
                         ....+..+..+++|++|++++|......   +..+..+++|+.|++++| .++.+++ ..+..+++|++|++++|. 
T Consensus       438 ---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-  511 (606)
T 3t6q_A          438 ---DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQ-HAFTSLKMMNHVDLSHNR-  511 (606)
T ss_dssp             ---BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-
T ss_pred             ---CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccCh-hhhccccCCCEEECCCCc-
Confidence               1222345566789999999998754321   234678899999999985 6777644 455788999999999864 


Q ss_pred             cccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCc
Q 048809          771 ITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNM  834 (878)
Q Consensus       771 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L  834 (878)
                      ++.++..           ....+++| .|+++++. ++.++..  .+..+++|++|++++||-.
T Consensus       512 l~~~~~~-----------~l~~l~~L-~L~L~~N~-l~~~~~~--~~~~l~~L~~L~l~~N~~~  560 (606)
T 3t6q_A          512 LTSSSIE-----------ALSHLKGI-YLNLASNH-ISIILPS--LLPILSQQRTINLRQNPLD  560 (606)
T ss_dssp             CCGGGGG-----------GGTTCCSC-EEECCSSC-CCCCCGG--GHHHHHTSSEEECTTCCEE
T ss_pred             cCcCChh-----------HhCccccc-EEECcCCc-ccccCHh--hcccCCCCCEEeCCCCCcc
Confidence            5544321           22347788 88888874 6665543  2456889999999998743

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.4e-32  Score=321.07  Aligned_cols=488  Identities=14%  Similarity=0.112  Sum_probs=319.8

Q ss_pred             ccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEE
Q 048809          225 VLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTL  301 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L  301 (878)
                      ...++++|++++|.++.+++. + .+++||+|++++|.+..++.+.|+++++|++|++++|.+..+| ..++++++|++|
T Consensus        54 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  133 (606)
T 3vq2_A           54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL  133 (606)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred             CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence            467899999999999987553 3 8999999999999999986666899999999999999998886 789999999999


Q ss_pred             EccCCCCCC---cccccCcccCcEEEeeCCCcccch-HhhcccccCcccccccccCCcEEEccCCCCCcccccccccccc
Q 048809          302 SLDYCELGD---MAIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERR  377 (878)
Q Consensus       302 ~L~~~~l~~---l~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  377 (878)
                      ++++|.++.   +..++++++|++|++++|.++.++ ..++.+.+|+..       +..|++.+|.+..           
T Consensus       134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~-------l~~L~l~~n~l~~-----------  195 (606)
T 3vq2_A          134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV-------NLSLDMSLNPIDF-----------  195 (606)
T ss_dssp             ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC-------CCEEECTTCCCCE-----------
T ss_pred             eCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc-------cceeeccCCCcce-----------
Confidence            999999874   478999999999999999988875 457777766542       5678888887651           


Q ss_pred             ccCcccccCCCCCCEEEeecCCCC--CCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHh
Q 048809          378 NASLHELNNLSKLTSLEILIQDEK--TLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIM  455 (878)
Q Consensus       378 ~~~~~~L~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~  455 (878)
                        .........+|+.|+++++...  ..|.++..+++|+.+.+..+.........                 ........
T Consensus       196 --~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~-----------------~~~~~~~~  256 (606)
T 3vq2_A          196 --IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE-----------------IFEPSIME  256 (606)
T ss_dssp             --ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS-----------------CCCGGGGT
T ss_pred             --eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc-----------------ccChHHhh
Confidence              1122223337999999988753  45666778888888877643321110000                 00000000


Q ss_pred             hc--cccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceec
Q 048809          456 QL--KGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICR  533 (878)
Q Consensus       456 ~l--~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~  533 (878)
                      .+  -.++.+.+..........+.+  ..+++|++|++.++. +..++        ....+++|+.|++.+|.- +.++ 
T Consensus       257 ~l~~l~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~-~~~l~--------~l~~~~~L~~L~l~~n~l-~~lp-  323 (606)
T 3vq2_A          257 GLCDVTIDEFRLTYTNDFSDDIVKF--HCLANVSAMSLAGVS-IKYLE--------DVPKHFKWQSLSIIRCQL-KQFP-  323 (606)
T ss_dssp             TGGGSEEEEEEECCCTTCCGGGGSC--GGGTTCSEEEEESCC-CCCCC--------CCCTTCCCSEEEEESCCC-SSCC-
T ss_pred             hhhhccHhheecccccccccccccc--ccCCCCCEEEecCcc-chhhh--------hccccccCCEEEcccccC-cccc-
Confidence            11  135566665555544444443  457888888887764 23322        344566777777777643 4442 


Q ss_pred             CCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhh---hcccccccccCCCCccccccccceee
Q 048809          534 GPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVI---FAAERGDESSNSNTQVIELTQLTTLE  610 (878)
Q Consensus       534 ~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~L~  610 (878)
                         .. .+++|+.|++.+|..+...+    +..+++|++|++++|.. ...   +...            ..+++|+.|+
T Consensus       324 ---~~-~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~l-~~~~~~~~~~------------~~~~~L~~L~  382 (606)
T 3vq2_A          324 ---TL-DLPFLKSLTLTMNKGSISFK----KVALPSLSYLDLSRNAL-SFSGCCSYSD------------LGTNSLRHLD  382 (606)
T ss_dssp             ---CC-CCSSCCEEEEESCSSCEECC----CCCCTTCCEEECCSSCE-EEEEECCHHH------------HCCSCCCEEE
T ss_pred             ---cC-CCCccceeeccCCcCccchh----hccCCCCCEEECcCCcc-CCCcchhhhh------------ccCCcccEeE
Confidence               22 67777777777775555442    24677777777777642 222   2111            2367777777


Q ss_pred             cccCCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeeccccccceeec
Q 048809          611 LCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKG  689 (878)
Q Consensus       611 L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~  689 (878)
                      +++|. ++.++.  ....+++|++|++++|.... .|...+..    +++|+.|++++|..                   
T Consensus       383 L~~n~-l~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----l~~L~~L~l~~n~l-------------------  436 (606)
T 3vq2_A          383 LSFNG-AIIMSA--NFMGLEELQHLDFQHSTLKRVTEFSAFLS----LEKLLYLDISYTNT-------------------  436 (606)
T ss_dssp             CCSCS-EEEECC--CCTTCTTCCEEECTTSEEESTTTTTTTTT----CTTCCEEECTTSCC-------------------
T ss_pred             CCCCc-cccchh--hccCCCCCCeeECCCCccCCccChhhhhc----cccCCEEECcCCCC-------------------
Confidence            77754 555552  34467777777777754333 33344444    77777777777764                   


Q ss_pred             cCCCCchhhhccccccccCCccEEEEccCCCccc-ccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccc
Q 048809          690 INFHPDLKQILKQESSHANNLEVLEIYGCDNLIN-LVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHC  768 (878)
Q Consensus       690 l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C  768 (878)
                             ....+..+..+++|++|++++|..... +|..+..+++|++|++++| .++..++ ..+.++++|++|++++|
T Consensus       437 -------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          437 -------KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             -------EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS
T ss_pred             -------CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCC
Confidence                   111223445567788888877764442 4556677788888888774 5666533 34466778888888776


Q ss_pred             cccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcC-CcceEEEcCCCCc
Q 048809          769 KMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFP-SLERLVVEDCPNM  834 (878)
Q Consensus       769 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~-sL~~L~i~~C~~L  834 (878)
                      . ++.++..           ....+++|+.|+++++. ++.+|..   +..++ +|++|+++++|-.
T Consensus       508 ~-l~~~~~~-----------~~~~l~~L~~L~l~~N~-l~~~p~~---~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          508 N-LLFLDSS-----------HYNQLYSLSTLDCSFNR-IETSKGI---LQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             C-CSCEEGG-----------GTTTCTTCCEEECTTSC-CCCEESC---GGGSCTTCCEEECCSCCCC
T ss_pred             c-CCCcCHH-----------HccCCCcCCEEECCCCc-CcccCHh---HhhhcccCcEEEccCCCcc
Confidence            4 4444221           22346778888887764 7777765   55665 5888888776543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=3.7e-30  Score=300.39  Aligned_cols=180  Identities=20%  Similarity=0.248  Sum_probs=136.9

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccc
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSL  292 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i  292 (878)
                      .....|. .++.++++|++++|.++.++.. + .+++|++|++++|.+..++.+.|.++++|++|+|++|.+..+| ..|
T Consensus        18 ~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   96 (570)
T 2z63_A           18 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF   96 (570)
T ss_dssp             CCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred             CccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhh
Confidence            3444443 4577899999999999887653 3 8999999999999988888888899999999999999998775 678


Q ss_pred             cCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCccc--chHhhcccccCcccccccccCCcEEEccCCCCCccc
Q 048809          293 GLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKE--LVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGK  368 (878)
Q Consensus       293 ~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~  368 (878)
                      +.+++|++|++++|.++.+  ..++++++|++|++++|.++.  +|..++++++           |+.|++.+|.+.   
T Consensus        97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~-----------L~~L~l~~n~l~---  162 (570)
T 2z63_A           97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-----------LEHLDLSSNKIQ---  162 (570)
T ss_dssp             TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT-----------CCEEECTTSCCC---
T ss_pred             cCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCC-----------CCEEeCcCCccc---
Confidence            9999999999999998876  359999999999999998875  6888886664           455577777654   


Q ss_pred             cccccccccccCcccccCCCCC----CEEEeecCCCCCCCcchhcccCCceEEEE
Q 048809          369 VEGVDGERRNASLHELNNLSKL----TSLEILIQDEKTLPRDLSFFKMLQRYRIL  419 (878)
Q Consensus       369 ~~~~~~~~~~~~~~~L~~l~~L----~~L~l~~~~~~~~~~~~~~l~~L~~L~l~  419 (878)
                               ......++.+++|    +.|+++++....++.......+|+.|++.
T Consensus       163 ---------~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  208 (570)
T 2z63_A          163 ---------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR  208 (570)
T ss_dssp             ---------EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred             ---------eecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecc
Confidence                     1223344445555    67888888776665443333356776665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.97  E-value=1.4e-29  Score=307.41  Aligned_cols=500  Identities=16%  Similarity=0.140  Sum_probs=307.5

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecC-CCCCCCchhhcCCCCCcEEEeeCCCCCCC-Ccc
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHND-HSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSS  291 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~-~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~  291 (878)
                      .....|.  .+.++++|++++|.++.+++ .+ .+++|++|++++| ....++...|.++++|++|+|++|.+..+ |..
T Consensus        15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA   92 (844)
T ss_dssp             CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred             CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence            4555565  78899999999999988744 33 8999999999999 66778666789999999999999999876 889


Q ss_pred             ccCCCCCcEEEccCCCCCC--ccc--ccCcccCcEEEeeCCCcccch--HhhcccccCccc----------ccc---cc-
Q 048809          292 LGLLQNLQTLSLDYCELGD--MAI--IGDLKKLVILALRGSDMKELV--GEIGQLTQLRLL----------IAP---IL-  351 (878)
Q Consensus       292 i~~L~~L~~L~L~~~~l~~--l~~--i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L----------ip~---~l-  351 (878)
                      |+++++|++|+|++|.++.  +..  ++++++|++|++++|.++.++  ..++++++|++|          .+.   .+ 
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~  172 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ  172 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred             ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence            9999999999999999875  433  999999999999999887763  568988888887          111   22 


Q ss_pred             -cCCcEEEccCCCCCccccccccccccccCcccccCCC------CCCEEEeecCCCC-CCCcchh---cccCCceEEEEe
Q 048809          352 -SRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLS------KLTSLEILIQDEK-TLPRDLS---FFKMLQRYRILI  420 (878)
Q Consensus       352 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~------~L~~L~l~~~~~~-~~~~~~~---~l~~L~~L~l~~  420 (878)
                       ++|+.|++..|.+..            ..+..++.+.      +|+.|++++|... ..+..+.   ....+..+.+..
T Consensus       173 ~~~L~~L~L~~n~l~~------------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~  240 (844)
T 3j0a_A          173 GKTLSFFSLAANSLYS------------RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH  240 (844)
T ss_dssp             HCSSCCCEECCSBSCC------------CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred             CCccceEECCCCcccc------------ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence             567777777766541            1112222222      4777777776532 2333332   123344444421


Q ss_pred             cccccccccchhhhhhhhhhhccCCccccchhHH--hhccccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCce
Q 048809          421 GSQWTWDYISSEISEIFRLMVASGANICLNGGHI--MQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLL  498 (878)
Q Consensus       421 ~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  498 (878)
                      ....... ..             ...........  ...++|+.|+++++.........+  ..+++|++|++.++. +.
T Consensus       241 ~~~~~~~-~~-------------~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~-i~  303 (844)
T 3j0a_A          241 HIMGAGF-GF-------------HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNK-IN  303 (844)
T ss_dssp             SCCBCSS-SC-------------SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESCC-CC
T ss_pred             ccccccc-cc-------------cccCCCChhhhhccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCCc-CC
Confidence            0000000 00             00000000000  013678888888765433222222  457888888888764 44


Q ss_pred             EEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecC
Q 048809          499 CVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGC  578 (878)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c  578 (878)
                      .+...      ....+++|+.|+++++ .++.+.  +..+..+++|+.|++.++ ++..+++. .+.++++|++|+++++
T Consensus       304 ~~~~~------~~~~l~~L~~L~Ls~N-~l~~~~--~~~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          304 KIADE------AFYGLDNLQVLNLSYN-LLGELY--SSNFYGLPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             EECTT------TTTTCSSCCEEEEESC-CCSCCC--SCSCSSCTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETC
T ss_pred             CCChH------HhcCCCCCCEEECCCC-CCCccC--HHHhcCCCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCC
Confidence            43221      4556788888888875 344331  223567788888888885 56666553 3467888888888886


Q ss_pred             CcchhhhcccccccccCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-cccc-cccccccc
Q 048809          579 QNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKST-IHESTKKR  656 (878)
Q Consensus       579 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~-~~~~~~~~  656 (878)
                      . +..++                .+++|+.|.++++ .++.++.     ...+++.|+++++ .++ ++.. .+..    
T Consensus       373 ~-l~~i~----------------~~~~L~~L~l~~N-~l~~l~~-----~~~~l~~L~ls~N-~l~~l~~~~~~~~----  424 (844)
T 3j0a_A          373 A-LTTIH----------------FIPSIPDIFLSGN-KLVTLPK-----INLTANLIHLSEN-RLENLDILYFLLR----  424 (844)
T ss_dssp             C-SCCCS----------------SCCSCSEEEEESC-CCCCCCC-----CCTTCCEEECCSC-CCCSSTTHHHHTT----
T ss_pred             C-CCccc----------------CCCCcchhccCCC-Ccccccc-----cccccceeecccC-ccccCchhhhhhc----
Confidence            4 33322                2778888888875 4555543     2567788888874 444 3321 1223    


Q ss_pred             ccceeEEEEecccccccceeeeccccccceeeccCCCCchhhhccccccccCCccEEEEccCCCc-----ccccCccccc
Q 048809          657 FHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNL-----INLVPSSTSF  731 (878)
Q Consensus       657 l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l-----~~l~~~~~~l  731 (878)
                      +++|+.|++++|..                    ..++.     ...+..+++|+.|+++++..-     ...+..+..+
T Consensus       425 l~~L~~L~Ls~N~l--------------------~~~~~-----~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l  479 (844)
T 3j0a_A          425 VPHLQILILNQNRF--------------------SSCSG-----DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL  479 (844)
T ss_dssp             CTTCCEEEEESCCC--------------------CCCCS-----SSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB
T ss_pred             CCccceeeCCCCcc--------------------ccccc-----ccccccCCccccccCCCCccccccccccchhhhcCc
Confidence            78888888888864                    22111     011223466666666665432     1112234456


Q ss_pred             CCCcEEEecccCCceEeechhhhhhhccceEEEEccccccccccccccccccccccccccccccchhhccccCcccceee
Q 048809          732 QNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFC  811 (878)
Q Consensus       732 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~  811 (878)
                      ++|+.|+++++ +++.++ +..+..+++|++|+++++ .++.++...             ..++|+.|+++++ +++.++
T Consensus       480 ~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l~~~~-------------~~~~L~~L~Ls~N-~l~~~~  542 (844)
T 3j0a_A          480 SHLQVLYLNHN-YLNSLP-PGVFSHLTALRGLSLNSN-RLTVLSHND-------------LPANLEILDISRN-QLLAPN  542 (844)
T ss_dssp             CCEECCCCCHH-HHTTCC-TTSSSSCCSCSEEEEESC-CCSSCCCCC-------------CCSCCCEEEEEEE-CCCCCC
T ss_pred             ccccEEECCCC-cccccC-hhHccchhhhheeECCCC-CCCccChhh-------------hhccccEEECCCC-cCCCCC
Confidence            66666776663 555553 233456667777777664 455554422             1256667777664 355444


Q ss_pred             ccccceeEcCCcceEEEcCCC
Q 048809          812 SVNNCAFKFPSLERLVVEDCP  832 (878)
Q Consensus       812 ~~~~~~~~l~sL~~L~i~~C~  832 (878)
                      ..     .+++|+.|+++++|
T Consensus       543 ~~-----~~~~L~~l~l~~Np  558 (844)
T 3j0a_A          543 PD-----VFVSLSVLDITHNK  558 (844)
T ss_dssp             SC-----CCSSCCEEEEEEEC
T ss_pred             hh-----HhCCcCEEEecCCC
Confidence            33     24566666666543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=3.1e-30  Score=297.03  Aligned_cols=460  Identities=13%  Similarity=0.108  Sum_probs=288.1

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCCC
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCEL  308 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~l  308 (878)
                      ++++++++.++.+|..+. ++|++|++++|.+..++...|.++++|++|+|++|.+..+ |..|+.+++|++|+|++|.+
T Consensus         3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL   81 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred             ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence            789999999999998765 8999999999999999877789999999999999999877 78899999999999999999


Q ss_pred             CCcccccCcccCcEEEeeCCCccc--chHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccC
Q 048809          309 GDMAIIGDLKKLVILALRGSDMKE--LVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNN  386 (878)
Q Consensus       309 ~~l~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  386 (878)
                      +.++.. .+++|++|++++|.++.  +|..++++++           |+.|++++|.+.            .   ..+..
T Consensus        82 ~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~-----------L~~L~L~~n~l~------------~---~~~~~  134 (520)
T 2z7x_B           82 VKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQ-----------LKFLGLSTTHLE------------K---SSVLP  134 (520)
T ss_dssp             CEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTT-----------CCEEEEEESSCC------------G---GGGGG
T ss_pred             eecCcc-ccCCccEEeccCCccccccchhhhccCCc-----------ceEEEecCcccc------------h---hhccc
Confidence            887444 89999999999998876  5677776654           455577777654            1   23444


Q ss_pred             CCCC--CEEEeecCCC---CCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccc
Q 048809          387 LSKL--TSLEILIQDE---KTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIK  461 (878)
Q Consensus       387 l~~L--~~L~l~~~~~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~  461 (878)
                      +++|  +.|++++|..   ...|.++..+.. +.+++                                           
T Consensus       135 l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~-~~l~l-------------------------------------------  170 (520)
T 2z7x_B          135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNT-ESLHI-------------------------------------------  170 (520)
T ss_dssp             GTTSCEEEEEEEECTTTTSSCCTTTTTTCCE-EEEEE-------------------------------------------
T ss_pred             cccceeeEEEeeccccccccccccccccccc-ceEEE-------------------------------------------
Confidence            5555  8888888765   233333222211 12221                                           


Q ss_pred             eEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCcccc
Q 048809          462 DLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESF  541 (878)
Q Consensus       462 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l  541 (878)
                        .+.+...... .+......+++|+.|++.++....              .           |..+...   ...++.+
T Consensus       171 --~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~--------------~-----------~~~~~~~---~~~l~~l  219 (520)
T 2z7x_B          171 --VFPTNKEFHF-ILDVSVKTVANLELSNIKCVLEDN--------------K-----------CSYFLSI---LAKLQTN  219 (520)
T ss_dssp             --ECCSSSCCCC-CCCCCCTTCSEEEECCEEECCSTT--------------T-----------THHHHHH---HHGGGGC
T ss_pred             --EeccCcchhh-hhhhhhhcccceeecccccccccc--------------c-----------cceeecc---hhhhccc
Confidence              2222211111 111111235555555555442100              0           0001100   0123456


Q ss_pred             CCccEEEeecCCCcccccchhh--hhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcce
Q 048809          542 CKVKDIRVEWCDKLKNVFPLVI--GRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTS  619 (878)
Q Consensus       542 ~~L~~L~l~~c~~L~~l~~~~~--~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~  619 (878)
                      ++|+.|++.++. +........  ....++|++|++++|.....++.....       .....+++|+.++++++..  .
T Consensus       220 ~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~-------~~~~~l~~L~~l~l~~n~~--~  289 (520)
T 2z7x_B          220 PKLSNLTLNNIE-TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD-------YSGTSLKALSIHQVVSDVF--G  289 (520)
T ss_dssp             TTCCEEEEEEEE-EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCC-------CCSCCCCEEEEEEEEECCC--C
T ss_pred             cchhhccccccc-cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhh-------cccccCceeEeccccccce--e
Confidence            667777766642 221100000  012357777777776543344433210       0002367777777776543  3


Q ss_pred             ecCCCccccc---CCcceEEEecCCCccccccccccccccccceeEEEEecccccccceeeeccccccceeeccCCCCch
Q 048809          620 FCTGDLHFEF---PSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDL  696 (878)
Q Consensus       620 ~~~~~~~~~~---~~L~~L~l~~C~~l~lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l  696 (878)
                      +|.. ....+   ++|+.|++++|.....+.  ...    +++|++|++++|..                    .     
T Consensus       290 ~p~~-~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~----l~~L~~L~Ls~n~l--------------------~-----  337 (520)
T 2z7x_B          290 FPQS-YIYEIFSNMNIKNFTVSGTRMVHMLC--PSK----ISPFLHLDFSNNLL--------------------T-----  337 (520)
T ss_dssp             SCTH-HHHHHHHTCCCSEEEEESSCCCCCCC--CSS----CCCCCEEECCSSCC--------------------C-----
T ss_pred             cchh-hhhcccccCceeEEEcCCCccccccc--hhh----CCcccEEEeECCcc--------------------C-----
Confidence            3311 11112   568888888865333221  122    77888888888864                    1     


Q ss_pred             hhhccccccccCCccEEEEccCCCcc--cccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccccccccc
Q 048809          697 KQILKQESSHANNLEVLEIYGCDNLI--NLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEI  774 (878)
Q Consensus       697 ~~i~~~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~  774 (878)
                       ...+..+..+++|++|++++|....  .+|..+..+++|+.|+++++ .++...+...+..+++|++|++++|.--..+
T Consensus       338 -~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~  415 (520)
T 2z7x_B          338 -DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSNILTDTI  415 (520)
T ss_dssp             -TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSSCCCGGG
T ss_pred             -hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhccCccCCEEECcCCCCCcch
Confidence             1112344567888888888876433  44455677888888888874 5555223344566788899999887533333


Q ss_pred             cccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccCC-CccCCCcceeecc
Q 048809          775 VVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGG-ELSTPNLRKVQLK  853 (878)
Q Consensus       775 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~-~~~~~~L~~l~i~  853 (878)
                      +..              ..++|+.|++++| +++.+|..   ...+++|++|++++| .++.+|.. ...+++|++|+++
T Consensus       416 ~~~--------------l~~~L~~L~Ls~N-~l~~ip~~---~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          416 FRC--------------LPPRIKVLDLHSN-KIKSIPKQ---VVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLH  476 (520)
T ss_dssp             GGS--------------CCTTCCEEECCSS-CCCCCCGG---GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             hhh--------------hcccCCEEECCCC-cccccchh---hhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECc
Confidence            321              1378899999887 57788876   558889999999888 67788876 5568889999988


Q ss_pred             cc
Q 048809          854 QW  855 (878)
Q Consensus       854 ~c  855 (878)
                      ++
T Consensus       477 ~N  478 (520)
T 2z7x_B          477 TN  478 (520)
T ss_dssp             SS
T ss_pred             CC
Confidence            73

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.97  E-value=1.1e-28  Score=299.77  Aligned_cols=526  Identities=13%  Similarity=0.083  Sum_probs=355.2

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCC-CCC-CccccCCCCCcEEEccCCC
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHL-LAL-PSSLGLLQNLQTLSLDYCE  307 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i-~~l-p~~i~~L~~L~~L~L~~~~  307 (878)
                      +..+.++++++.+|.  -.+++++|++++|.+..++...|.++++|++|+|++|.. ..+ |..|+++++|++|+|++|.
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~   84 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK   84 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence            567888889999998  568999999999999988777789999999999999954 566 7889999999999999999


Q ss_pred             CCCc--ccccCcccCcEEEeeCCCccc-chHh--hcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcc
Q 048809          308 LGDM--AIIGDLKKLVILALRGSDMKE-LVGE--IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLH  382 (878)
Q Consensus       308 l~~l--~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  382 (878)
                      ++.+  ..++++++|++|++++|.++. +|..  +++++           +|+.|++++|.+..           .....
T Consensus        85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~-----------~L~~L~Ls~N~l~~-----------~~~~~  142 (844)
T 3j0a_A           85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK-----------ALTRLDLSKNQIRS-----------LYLHP  142 (844)
T ss_dssp             CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS-----------SCCEEEEESCCCCC-----------CCCCG
T ss_pred             CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC-----------CCCEEECCCCcccc-----------cccch
Confidence            8854  789999999999999998876 4544  55544           56677888887651           11235


Q ss_pred             cccCCCCCCEEEeecCCCCC-CCcchhcc--cCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccc
Q 048809          383 ELNNLSKLTSLEILIQDEKT-LPRDLSFF--KMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKG  459 (878)
Q Consensus       383 ~L~~l~~L~~L~l~~~~~~~-~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~  459 (878)
                      .++++++|+.|++++|.... .+..+..+  ++|+.|++..+........            .+.....    . .....
T Consensus       143 ~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~------------~~~~~~~----~-~~~~~  205 (844)
T 3j0a_A          143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV------------DWGKCMN----P-FRNMV  205 (844)
T ss_dssp             GGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC------------CCCSSSC----T-TTTCC
T ss_pred             hHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc------------chhhcCC----c-cccCc
Confidence            68899999999999998655 45566555  7899988864332110000            0000000    0 00124


Q ss_pred             cceEEecCcCCcccccccCcC-CCCCCCcEEEEccCCCceEEe-----ecccccccccCcccccceeeccccccccceec
Q 048809          460 IKDLCLGGSLDMKSVLYGSDG-EGFPQLKRLEVVKNSNLLCVV-----DTVDRATALTTAFPVLESLLLRHLSNLEKICR  533 (878)
Q Consensus       460 L~~L~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~-----~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~  533 (878)
                      |+.|+++++.........+.. -..++++.|.+.....-..+.     ......+ .....++|+.|+++++ .+..+. 
T Consensus       206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f-~~l~~~~L~~L~Ls~n-~l~~~~-  282 (844)
T 3j0a_A          206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF-AGLARSSVRHLDLSHG-FVFSLN-  282 (844)
T ss_dssp             BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT-TTTTTSCCCEEECTTC-CCCEEC-
T ss_pred             eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh-hccccCCccEEECCCC-cccccC-
Confidence            899999887543322222211 123577888876321100000     0000000 1112478999999885 344432 


Q ss_pred             CCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeeccc
Q 048809          534 GPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCS  613 (878)
Q Consensus       534 ~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  613 (878)
                       +..+..+++|+.|++.++ ++..+++. .+.++++|++|+++++..-...+....            .+++|+.|++++
T Consensus       283 -~~~~~~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------~l~~L~~L~L~~  347 (844)
T 3j0a_A          283 -SRVFETLKDLKVLNLAYN-KINKIADE-AFYGLDNLQVLNLSYNLLGELYSSNFY------------GLPKVAYIDLQK  347 (844)
T ss_dssp             -SCCSSSCCCCCEEEEESC-CCCEECTT-TTTTCSSCCEEEEESCCCSCCCSCSCS------------SCTTCCEEECCS
T ss_pred             -hhhhhcCCCCCEEECCCC-cCCCCChH-HhcCCCCCCEEECCCCCCCccCHHHhc------------CCCCCCEEECCC
Confidence             233567899999999995 66666553 557899999999999754322233333            489999999999


Q ss_pred             CCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeeccccccceeeccCC
Q 048809          614 LPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINF  692 (878)
Q Consensus       614 c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~  692 (878)
                      + .+..++.. ....+++|++|++++| .++ ++.         +++|+.|++++|+..  . ++  .....++.++++.
T Consensus       348 N-~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~i~~---------~~~L~~L~l~~N~l~--~-l~--~~~~~l~~L~ls~  410 (844)
T 3j0a_A          348 N-HIAIIQDQ-TFKFLEKLQTLDLRDN-ALTTIHF---------IPSIPDIFLSGNKLV--T-LP--KINLTANLIHLSE  410 (844)
T ss_dssp             C-CCCCCCSS-CSCSCCCCCEEEEETC-CSCCCSS---------CCSCSEEEEESCCCC--C-CC--CCCTTCCEEECCS
T ss_pred             C-CCCccChh-hhcCCCCCCEEECCCC-CCCcccC---------CCCcchhccCCCCcc--c-cc--ccccccceeeccc
Confidence            7 56666543 3457899999999995 444 543         789999999999861  1 11  1133456666554


Q ss_pred             CCchhhhc-cccccccCCccEEEEccCCCcccccC--cccccCCCcEEEecccCCceEee----chhhhhhhccceEEEE
Q 048809          693 HPDLKQIL-KQESSHANNLEVLEIYGCDNLINLVP--SSTSFQNLTTVAVDFCYGMINIL----TSSTAKSLVRLKQMKI  765 (878)
Q Consensus       693 ~~~l~~i~-~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~i~~c~~l~~l~----~~~~~~~l~~L~~L~i  765 (878)
                      .. ++.+. ...+..+++|+.|++++|.. ...+.  ....+++|+.|+++++ .++...    ....+.++++|+.|++
T Consensus       411 N~-l~~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~L  487 (844)
T 3j0a_A          411 NR-LENLDILYFLLRVPHLQILILNQNRF-SSCSGDQTPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYL  487 (844)
T ss_dssp             CC-CCSSTTHHHHTTCTTCCEEEEESCCC-CCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred             Cc-cccCchhhhhhcCCccceeeCCCCcc-cccccccccccCCccccccCCCC-ccccccccccchhhhcCcccccEEEC
Confidence            32 22221 11234679999999999864 33222  2345789999999984 554321    1234677899999999


Q ss_pred             ccccccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccCCCccCC
Q 048809          766 FHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGGELSTP  845 (878)
Q Consensus       766 ~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~~~~~~  845 (878)
                      ++| .++.++..           ....+++|+.|+++++ +++.++..   ... ++|+.|+++++. ++.++...  .+
T Consensus       488 s~N-~l~~~~~~-----------~~~~l~~L~~L~Ls~N-~l~~l~~~---~~~-~~L~~L~Ls~N~-l~~~~~~~--~~  547 (844)
T 3j0a_A          488 NHN-YLNSLPPG-----------VFSHLTALRGLSLNSN-RLTVLSHN---DLP-ANLEILDISRNQ-LLAPNPDV--FV  547 (844)
T ss_dssp             CHH-HHTTCCTT-----------SSSSCCSCSEEEEESC-CCSSCCCC---CCC-SCCCEEEEEEEC-CCCCCSCC--CS
T ss_pred             CCC-cccccChh-----------HccchhhhheeECCCC-CCCccChh---hhh-ccccEEECCCCc-CCCCChhH--hC
Confidence            986 57777653           2235899999999986 68888876   222 899999999985 55554433  56


Q ss_pred             Ccceeeccc
Q 048809          846 NLRKVQLKQ  854 (878)
Q Consensus       846 ~L~~l~i~~  854 (878)
                      +|+.+++.+
T Consensus       548 ~L~~l~l~~  556 (844)
T 3j0a_A          548 SLSVLDITH  556 (844)
T ss_dssp             SCCEEEEEE
T ss_pred             CcCEEEecC
Confidence            899999987

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=2.6e-29  Score=291.55  Aligned_cols=482  Identities=17%  Similarity=0.185  Sum_probs=296.1

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-c
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-L  292 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i  292 (878)
                      .....|. .+++++++|++++|.++.+++ .+ .+++|++|++++|.+..++.+.|.++++|++|+|++|.+..+|.. |
T Consensus        16 ~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   94 (549)
T 2z81_A           16 SFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF   94 (549)
T ss_dssp             CCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred             ccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence            3344443 345788889998888887643 33 788899999988888888877778888899999998888877655 8


Q ss_pred             cCCCCCcEEEccCCCCCCc---ccccCcccCcEEEeeCCC-cccchH-hhcccccCcccccccccCCcEEEccCCCCCcc
Q 048809          293 GLLQNLQTLSLDYCELGDM---AIIGDLKKLVILALRGSD-MKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWG  367 (878)
Q Consensus       293 ~~L~~L~~L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~-l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~  367 (878)
                      +.+++|++|++++|.++.+   ..++++++|++|++++|. +..+|. .++++++           |+.|++.+|.+.  
T Consensus        95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~-----------L~~L~L~~n~l~--  161 (549)
T 2z81_A           95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS-----------LNELEIKALSLR--  161 (549)
T ss_dssp             TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE-----------EEEEEEEETTCC--
T ss_pred             ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc-----------cCeeeccCCccc--
Confidence            8888899999988887642   668888889999988885 666663 4665554           455577666654  


Q ss_pred             ccccccccccccCcccccCCCCCCEEEeecCCCCCCCcchh-cccCCceEEEEecccccccccchhhhhhhhhhhccCCc
Q 048809          368 KVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLS-FFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGAN  446 (878)
Q Consensus       368 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~  446 (878)
                                ...+..++++++|+.|+++++....+|.++. .+++|+.|++..+.........                
T Consensus       162 ----------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------------  215 (549)
T 2z81_A          162 ----------NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP----------------  215 (549)
T ss_dssp             ----------EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCC----------------
T ss_pred             ----------ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccc----------------
Confidence                      2345667777888888888877766666543 5778888887644322110000                


Q ss_pred             cccchhHHhhccccceEEecCcCCcccccccC--cCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccc
Q 048809          447 ICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGS--DGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRH  524 (878)
Q Consensus       447 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~  524 (878)
                          ..+...+++|+.|++.++.........+  ....+++|+.|++.+|. +..+.............+++|+.|.+.+
T Consensus       216 ----~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~  290 (549)
T 2z81_A          216 ----LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT-LNGLGDFNPSESDVVSELGKVETVTIRR  290 (549)
T ss_dssp             ----CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE-EECCSCCCCCTTTCCCCCTTCCEEEEES
T ss_pred             ----cchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc-ccccccccccchhhhhhhcccccccccc
Confidence                0011124677777777654322111111  01346788888887764 1111100000000235567788887776


Q ss_pred             cccccceec-CCC--CccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccc
Q 048809          525 LSNLEKICR-GPL--AAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVI  601 (878)
Q Consensus       525 ~~~L~~~~~-~~~--~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~  601 (878)
                      +. +..+.. ...  ....+++|+.|++.++ ++..+|. ..++++++|++|++++|.....++....         ...
T Consensus       291 ~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------~~~  358 (549)
T 2z81_A          291 LH-IPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKNSA---------CKG  358 (549)
T ss_dssp             CB-CSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCCH-HHHHHCTTCCEEECCSSCCCHHHHHHHT---------CTT
T ss_pred             cc-cchhhhcccchhhhhhcccceEEEeccC-ccccCCH-HHHhcCccccEEEccCCccccccccchh---------hhh
Confidence            43 111100 000  0123578999999885 5776654 3446789999999999876554432110         012


Q ss_pred             cccccceeecccCCCcceecC-CCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeec
Q 048809          602 ELTQLTTLELCSLPQLTSFCT-GDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETV  679 (878)
Q Consensus       602 ~~~~L~~L~L~~c~~l~~~~~-~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~  679 (878)
                      .+++|+.|++++| .++.++. +.....+++|++|++++| +++ +|..+..     +++|++|++++|..         
T Consensus       359 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~-----~~~L~~L~Ls~N~l---------  422 (549)
T 2z81_A          359 AWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQW-----PEKMRFLNLSSTGI---------  422 (549)
T ss_dssp             SSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCC-----CTTCCEEECTTSCC---------
T ss_pred             ccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCChhhcc-----cccccEEECCCCCc---------
Confidence            3889999999986 4554431 112457889999999986 566 7765433     78999999999874         


Q ss_pred             cccccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhcc
Q 048809          680 ENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVR  759 (878)
Q Consensus       680 ~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~  759 (878)
                                 ...+.       .  ..++|++|++++|. ++.++   ..+++|++|+++++ +++.++.   ...+++
T Consensus       423 -----------~~l~~-------~--~~~~L~~L~Ls~N~-l~~~~---~~l~~L~~L~Ls~N-~l~~ip~---~~~l~~  474 (549)
T 2z81_A          423 -----------RVVKT-------C--IPQTLEVLDVSNNN-LDSFS---LFLPRLQELYISRN-KLKTLPD---ASLFPV  474 (549)
T ss_dssp             -----------SCCCT-------T--SCTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSSCCC---GGGCTT
T ss_pred             -----------ccccc-------h--hcCCceEEECCCCC-hhhhc---ccCChhcEEECCCC-ccCcCCC---cccCcc
Confidence                       11111       0  02456666666664 33332   35666677776663 5555432   134666


Q ss_pred             ceEEEEccccccccccccccccccccccccccccccchhhccccCccccee
Q 048809          760 LKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSF  810 (878)
Q Consensus       760 L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l  810 (878)
                      |+.|++++| .++.++..           ....+++|+.|++++++-..+.
T Consensus       475 L~~L~Ls~N-~l~~~~~~-----------~~~~l~~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          475 LLVMKISRN-QLKSVPDG-----------IFDRLTSLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             CCEEECCSS-CCCCCCTT-----------GGGGCTTCCEEECCSSCBCCCH
T ss_pred             CCEEecCCC-ccCCcCHH-----------HHhcCcccCEEEecCCCccCCC
Confidence            777777664 35544432           1233666666666666543333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=8.1e-29  Score=289.01  Aligned_cols=497  Identities=17%  Similarity=0.154  Sum_probs=332.4

Q ss_pred             CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCC
Q 048809          229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCE  307 (878)
Q Consensus       229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~  307 (878)
                      .+.++.++..++.+|..+ .+++++|++++|.+..++...|..+++|++|+|++|.+..++ ..|+++++|++|++++|.
T Consensus         9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~   87 (570)
T 2z63_A            9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (570)
T ss_dssp             TTEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CcEEEeCCCCccccCCCc-cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence            466777878888898765 368999999999999998877899999999999999998875 668999999999999999


Q ss_pred             CCCc--ccccCcccCcEEEeeCCCcccchH-hhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809          308 LGDM--AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL  384 (878)
Q Consensus       308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  384 (878)
                      ++.+  ..++++++|++|++++|.++.+|. .+++++           +|+.|++.+|.+..           ...+..+
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~-----------~L~~L~L~~n~l~~-----------~~lp~~~  145 (570)
T 2z63_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-----------TLKELNVAHNLIQS-----------FKLPEYF  145 (570)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT-----------TCCEEECCSSCCCC-----------CCCCGGG
T ss_pred             CCccCHhhhcCccccccccccccccccCCCccccccc-----------cccEEecCCCccce-----------ecChhhh
Confidence            8865  679999999999999999988876 466544           56677888886651           1246778


Q ss_pred             cCCCCCCEEEeecCCCCCCC-cchhcccCC----ceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccc
Q 048809          385 NNLSKLTSLEILIQDEKTLP-RDLSFFKML----QRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKG  459 (878)
Q Consensus       385 ~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~  459 (878)
                      +++++|+.|++++|....++ ..+..+.+|    ..+++..+....                       ....... ..+
T Consensus       146 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~-----------------------~~~~~~~-~~~  201 (570)
T 2z63_A          146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-----------------------IQPGAFK-EIR  201 (570)
T ss_dssp             GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-----------------------ECTTTTT-TCE
T ss_pred             cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee-----------------------cCHHHhc-cCc
Confidence            99999999999999877664 455566666    555543211100                       0111111 136


Q ss_pred             cceEEecCcCCcccccccCcCCCCCCCcEEEEc--cCC---CceEEeecccccccccCccc--ccceeecccccccccee
Q 048809          460 IKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVV--KNS---NLLCVVDTVDRATALTTAFP--VLESLLLRHLSNLEKIC  532 (878)
Q Consensus       460 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~---~l~~~~~~~~~~~~~~~~~~--~L~~L~L~~~~~L~~~~  532 (878)
                      |++|++.++.......+... ..+++++.+.+.  ...   .+..+...      ....++  .++.+.+.++..+... 
T Consensus       202 L~~L~l~~n~~~~~~~~~~~-~~l~~l~~~~l~~~~~~~~~~l~~~~~~------~~~~l~~l~l~~l~l~~~~~~~~~-  273 (570)
T 2z63_A          202 LHKLTLRNNFDSLNVMKTCI-QGLAGLEVHRLVLGEFRNEGNLEKFDKS------ALEGLCNLTIEEFRLAYLDYYLDD-  273 (570)
T ss_dssp             EEEEEEESCCSCTTHHHHHH-HTTTTCEEEEEEEEECCCCSSCEECCTT------TTGGGGGSEEEEEEEEETTEEESC-
T ss_pred             ceeEecccccccccchhhhh-cCccccceeeeccccccCchhhhhcchh------hhccccccchhhhhhhcchhhhhh-
Confidence            77888776532211111111 235555554432  111   11111100      111122  2344444443232221 


Q ss_pred             cCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecc
Q 048809          533 RGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELC  612 (878)
Q Consensus       533 ~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  612 (878)
                       .+..+..+++|+.|++.++ .+..+|.  .+..+ +|++|++++|.. ..++.              ..+++|+.|++.
T Consensus       274 -~~~~~~~l~~L~~L~l~~~-~l~~l~~--~~~~~-~L~~L~l~~n~~-~~l~~--------------~~l~~L~~L~l~  333 (570)
T 2z63_A          274 -IIDLFNCLTNVSSFSLVSV-TIERVKD--FSYNF-GWQHLELVNCKF-GQFPT--------------LKLKSLKRLTFT  333 (570)
T ss_dssp             -STTTTGGGTTCSEEEEESC-EECSCCB--CCSCC-CCSEEEEESCBC-SSCCB--------------CBCSSCCEEEEE
T ss_pred             -chhhhcCcCcccEEEecCc-cchhhhh--hhccC-CccEEeeccCcc-cccCc--------------ccccccCEEeCc
Confidence             1223456788888888876 4555554  23455 888888888753 34432              127788888888


Q ss_pred             cCCCcceecCCCcccccCCcceEEEecCCCccc---cccccccccccccceeEEEEecccccccceeeeccccccceeec
Q 048809          613 SLPQLTSFCTGDLHFEFPSLEKLKILECPQVKF---KSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKG  689 (878)
Q Consensus       613 ~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~l---p~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~  689 (878)
                      ++.....++.    ..+++|++|++++|.--..   |.. +..    +++|+.|++++|..                   
T Consensus       334 ~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~-~~~----~~~L~~L~l~~n~l-------------------  385 (570)
T 2z63_A          334 SNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQS-DFG----TTSLKYLDLSFNGV-------------------  385 (570)
T ss_dssp             SCBSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEHH-HHT----CSCCCEEECCSCSE-------------------
T ss_pred             CCcccccccc----ccCCCCCEEeCcCCccCcccccccc-ccc----cCccCEEECCCCcc-------------------
Confidence            8654433322    4678888888887543222   332 333    78888888888764                   


Q ss_pred             cCCCCchhhhccccccccCCccEEEEccCCCccccc-CcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccc
Q 048809          690 INFHPDLKQILKQESSHANNLEVLEIYGCDNLINLV-PSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHC  768 (878)
Q Consensus       690 l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C  768 (878)
                             ..++.. +..+++|++|++++|......+ ..+..+++|+.|++++| .+.... +..+..+++|++|++++|
T Consensus       386 -------~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n  455 (570)
T 2z63_A          386 -------ITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAF-NGIFNGLSSLEVLKMAGN  455 (570)
T ss_dssp             -------EEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS-CCEECC-TTTTTTCTTCCEEECTTC
T ss_pred             -------cccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC-cccccc-hhhhhcCCcCcEEECcCC
Confidence                   122222 5667999999999987544333 35678999999999996 565553 455678999999999998


Q ss_pred             ccc-ccccccccccccccccccccccccchhhccccCccccee-eccccceeEcCCcceEEEcCCCCcccccCC-CccCC
Q 048809          769 KMI-TEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSF-CSVNNCAFKFPSLERLVVEDCPNMSIFSGG-ELSTP  845 (878)
Q Consensus       769 ~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l-~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~-~~~~~  845 (878)
                      .-. ..+|.            ....+++|+.|++++|. ++.+ |..   +..+++|++|++++| +++.+|.. ...++
T Consensus       456 ~l~~~~~p~------------~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~  518 (570)
T 2z63_A          456 SFQENFLPD------------IFTELRNLTFLDLSQCQ-LEQLSPTA---FNSLSSLQVLNMASN-QLKSVPDGIFDRLT  518 (570)
T ss_dssp             EEGGGEECS------------CCTTCTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred             cCccccchh------------hhhcccCCCEEECCCCc-cccCChhh---hhcccCCCEEeCCCC-cCCCCCHHHhhccc
Confidence            633 23443            23458999999999985 6666 444   567899999999999 57776654 56789


Q ss_pred             Ccceeecccc
Q 048809          846 NLRKVQLKQW  855 (878)
Q Consensus       846 ~L~~l~i~~c  855 (878)
                      +|++|+++++
T Consensus       519 ~L~~L~l~~N  528 (570)
T 2z63_A          519 SLQKIWLHTN  528 (570)
T ss_dssp             TCCEEECCSS
T ss_pred             CCcEEEecCC
Confidence            9999999984

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=7.6e-28  Score=284.86  Aligned_cols=182  Identities=19%  Similarity=0.213  Sum_probs=119.5

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cc
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SL  292 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i  292 (878)
                      .+...| ..++.++++|++++|.++.+++. + .+++||+|++++|.+..++++.|.++++|++|+|++|+++.+|. .|
T Consensus        42 ~l~~vP-~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f  120 (635)
T 4g8a_A           42 NFYKIP-DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF  120 (635)
T ss_dssp             CCSSCC-SSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred             CcCccC-CCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence            344444 34567788888888888887753 3 78888888888888888887778888888888888888888764 46


Q ss_pred             cCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCccc--chHhhcccccCcccccccccCCcEEEccCCCCCccc
Q 048809          293 GLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKE--LVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGK  368 (878)
Q Consensus       293 ~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~  368 (878)
                      .+|++|++|+|++|.++.+  ..++++++|++|++++|.++.  +|..+++++           +|+.|++.+|.+....
T Consensus       121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~-----------~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----------NLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-----------TCCEEECCSSCCCEEC
T ss_pred             cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch-----------hhhhhcccCccccccc
Confidence            8888888888888887766  457888888888888887764  355555544           4555677776654110


Q ss_pred             cccccccccccCcccccCCCC-CCEEEeecCCCCCCCcchhcccCCceEEE
Q 048809          369 VEGVDGERRNASLHELNNLSK-LTSLEILIQDEKTLPRDLSFFKMLQRYRI  418 (878)
Q Consensus       369 ~~~~~~~~~~~~~~~L~~l~~-L~~L~l~~~~~~~~~~~~~~l~~L~~L~l  418 (878)
                               ...+..+..+.. +..++++.+....++........+..+.+
T Consensus       190 ---------~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l  231 (635)
T 4g8a_A          190 ---------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL  231 (635)
T ss_dssp             ---------GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred             ---------cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhh
Confidence                     111223333322 23566666666555544333333334443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=3.8e-28  Score=281.80  Aligned_cols=481  Identities=16%  Similarity=0.173  Sum_probs=300.3

Q ss_pred             EEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCC
Q 048809          231 AISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELG  309 (878)
Q Consensus       231 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~  309 (878)
                      ..+.+++.++.+|..+. ++|++|++++|.+..++...|.++++|++|++++|.+..+| ..|+.+++|++|++++|.++
T Consensus         9 ~c~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~   87 (549)
T 2z81_A            9 VCDGRSRSFTSIPSGLT-AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS   87 (549)
T ss_dssp             EEECTTSCCSSCCSCCC-TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             eEECCCCccccccccCC-CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence            35677778888887653 78999999999888887666789999999999999888765 67889999999999999887


Q ss_pred             Cc--ccccCcccCcEEEeeCCCcccc--hHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809          310 DM--AIIGDLKKLVILALRGSDMKEL--VGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN  385 (878)
Q Consensus       310 ~l--~~i~~L~~L~~L~l~~~~l~~l--p~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~  385 (878)
                      .+  ..++++++|++|++++|.++.+  |..+++++           +|+.|++.+|....           ......+.
T Consensus        88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-----------~L~~L~L~~n~~~~-----------~~~~~~~~  145 (549)
T 2z81_A           88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-----------NLQTLRIGNVETFS-----------EIRRIDFA  145 (549)
T ss_dssp             SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-----------TCCEEEEEESSSCC-----------EECTTTTT
T ss_pred             ccCHHHhccCCCCcEEECCCCcccccchhhhhhccC-----------CccEEECCCCcccc-----------ccCHhhhh
Confidence            65  4488899999999998877743  44455444           44555666654220           11224566


Q ss_pred             CCCCCCEEEeecCCCCC-CCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEE
Q 048809          386 NLSKLTSLEILIQDEKT-LPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLC  464 (878)
Q Consensus       386 ~l~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~  464 (878)
                      ++++|++|+++++.... .|.++..                                               +++|++|+
T Consensus       146 ~l~~L~~L~L~~n~l~~~~~~~l~~-----------------------------------------------l~~L~~L~  178 (549)
T 2z81_A          146 GLTSLNELEIKALSLRNYQSQSLKS-----------------------------------------------IRDIHHLT  178 (549)
T ss_dssp             TCCEEEEEEEEETTCCEECTTTTTT-----------------------------------------------CSEEEEEE
T ss_pred             cccccCeeeccCCcccccChhhhhc-----------------------------------------------cccCceEe
Confidence            67777777777776543 3333322                                               34455555


Q ss_pred             ecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecC--CCCccccC
Q 048809          465 LGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRG--PLAAESFC  542 (878)
Q Consensus       465 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~--~~~~~~l~  542 (878)
                      +.++... . .+......+++|++|++.++. +......  ... ....+++|+.|++.++. ++.....  ......++
T Consensus       179 l~~n~~~-~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--~~~-~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~  251 (549)
T 2z81_A          179 LHLSESA-F-LLEIFADILSSVRYLELRDTN-LARFQFS--PLP-VDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYIL  251 (549)
T ss_dssp             EECSBST-T-HHHHHHHSTTTBSEEEEESCB-CTTCCCC--CCS-SCCCCCCCCEEEEESCE-EEHHHHHHHHGGGGGCT
T ss_pred             cccCccc-c-cchhhHhhcccccEEEccCCc-ccccccc--ccc-hhhhhhcccceeccccc-cchhHHHHHHHHhhhhc
Confidence            5544321 1 111111347889999998764 2211000  000 22346677777777642 2211000  01124566


Q ss_pred             CccEEEeecCCCcccccc-----hhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCc
Q 048809          543 KVKDIRVEWCDKLKNVFP-----LVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQL  617 (878)
Q Consensus       543 ~L~~L~l~~c~~L~~l~~-----~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l  617 (878)
                      +|+.+.+.+|. +..+..     ...+..+++|+.|.+.++..-........       .......++|+.|+++++. +
T Consensus       252 ~L~~l~l~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l-------~~~~~~~~~L~~L~l~~n~-l  322 (549)
T 2z81_A          252 ELSEVEFDDCT-LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL-------STVYSLLEKVKRITVENSK-V  322 (549)
T ss_dssp             TCCEEEEESCE-EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCC-------CHHHHHSTTCCEEEEESSC-C
T ss_pred             ccccccccccc-ccccccccccchhhhhhhcccccccccccccchhhhcccc-------hhhhhhcccceEEEeccCc-c
Confidence            77777777763 222211     01224566777777776532111000000       0001224567777777653 5


Q ss_pred             ceecCCCcccccCCcceEEEecCCCcc-ccc--cccccccccccceeEEEEecccccccceeeeccccccceeeccCCCC
Q 048809          618 TSFCTGDLHFEFPSLEKLKILECPQVK-FKS--TIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHP  694 (878)
Q Consensus       618 ~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~--~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~  694 (878)
                      +.+|.. ....+++|++|++++|.... +|.  ..+..    +++|+.|++++|..                        
T Consensus       323 ~~ip~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~----l~~L~~L~Ls~N~l------------------------  373 (549)
T 2z81_A          323 FLVPCS-FSQHLKSLEFLDLSENLMVEEYLKNSACKGA----WPSLQTLVLSQNHL------------------------  373 (549)
T ss_dssp             CCCCHH-HHHHCTTCCEEECCSSCCCHHHHHHHTCTTS----STTCCEEECTTSCC------------------------
T ss_pred             ccCCHH-HHhcCccccEEEccCCccccccccchhhhhc----cccCcEEEccCCcc------------------------
Confidence            554431 11356777777777754333 332  11233    67777777777753                        


Q ss_pred             chhhhcc--ccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccccccc
Q 048809          695 DLKQILK--QESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMIT  772 (878)
Q Consensus       695 ~l~~i~~--~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~  772 (878)
                        +.++.  ..+..+++|++|++++|. ++.+|..+..+++|++|++++| +++.++. ..   .++|+.|++++| .++
T Consensus       374 --~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N-~l~~l~~-~~---~~~L~~L~Ls~N-~l~  444 (549)
T 2z81_A          374 --RSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSST-GIRVVKT-CI---PQTLEVLDVSNN-NLD  444 (549)
T ss_dssp             --CCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTS-CCSCCCT-TS---CTTCSEEECCSS-CCS
T ss_pred             --cccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCC-Ccccccc-hh---cCCceEEECCCC-Chh
Confidence              22211  235667899999999984 6688888888899999999985 5766532 22   258999999986 466


Q ss_pred             cccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccCC-CccCCCcceee
Q 048809          773 EIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGG-ELSTPNLRKVQ  851 (878)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~-~~~~~~L~~l~  851 (878)
                      .++.               .+++|++|+++++ +++.+|..    ..+++|++|++++| .++.+|.+ ...+++|+.|+
T Consensus       445 ~~~~---------------~l~~L~~L~Ls~N-~l~~ip~~----~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~  503 (549)
T 2z81_A          445 SFSL---------------FLPRLQELYISRN-KLKTLPDA----SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIW  503 (549)
T ss_dssp             CCCC---------------CCTTCCEEECCSS-CCSSCCCG----GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEE
T ss_pred             hhcc---------------cCChhcEEECCCC-ccCcCCCc----ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEE
Confidence            5542               3789999999987 68888764    35899999999998 56666654 56789999999


Q ss_pred             ccccC
Q 048809          852 LKQWD  856 (878)
Q Consensus       852 i~~c~  856 (878)
                      +++++
T Consensus       504 l~~N~  508 (549)
T 2z81_A          504 LHTNP  508 (549)
T ss_dssp             CCSSC
T ss_pred             ecCCC
Confidence            98754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=7.8e-28  Score=282.25  Aligned_cols=34  Identities=15%  Similarity=0.301  Sum_probs=27.4

Q ss_pred             CCCcEEEeeCCCCC-CCCCCC-CCCCccEEEeecCC
Q 048809          227 KDCTAISLNNSNIN-ELPQGF-ECPQLKYFRIHNDH  260 (878)
Q Consensus       227 ~~lr~l~l~~~~~~-~l~~~~-~~~~Lr~L~l~~~~  260 (878)
                      .+++.|+++++.+. .+|+.+ .+++|++|++++|.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~  116 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHG  116 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCc
Confidence            46888999998876 466666 89999999998883

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=5.2e-28  Score=280.81  Aligned_cols=459  Identities=15%  Similarity=0.136  Sum_probs=265.7

Q ss_pred             CCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCC
Q 048809          228 DCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYC  306 (878)
Q Consensus       228 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~  306 (878)
                      ..++++++++.++.+|..+. ++|++|++++|.+..++...|.++++|++|+|++|.++.+ |..|+.+++|++|+|++|
T Consensus        32 ~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           32 LESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             -CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             CCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            34899999999999998664 8999999999999999987789999999999999999887 677999999999999999


Q ss_pred             CCCCcccccCcccCcEEEeeCCCcccch--HhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809          307 ELGDMAIIGDLKKLVILALRGSDMKELV--GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL  384 (878)
Q Consensus       307 ~l~~l~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  384 (878)
                      .++.++.. .+++|++|++++|.++.+|  ..++++++           |+.|++++|.+.            ......+
T Consensus       111 ~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~-----------L~~L~L~~n~l~------------~~~~~~l  166 (562)
T 3a79_B          111 RLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTK-----------LTFLGLSAAKFR------------QLDLLPV  166 (562)
T ss_dssp             CCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTT-----------CCEEEEECSBCC------------TTTTGGG
T ss_pred             cCCccCcc-ccccCCEEECCCCCccccCchHhhcccCc-----------ccEEecCCCccc------------cCchhhh
Confidence            99887444 8999999999999988765  66776554           555677777654            1223344


Q ss_pred             cCCCCCCEEEeecCCC--CC-CCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccc
Q 048809          385 NNLSKLTSLEILIQDE--KT-LPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIK  461 (878)
Q Consensus       385 ~~l~~L~~L~l~~~~~--~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~  461 (878)
                      ..+ +|+.|++++|..  .. .|.++..+.. +.+.+                                           
T Consensus       167 ~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l-------------------------------------------  201 (562)
T 3a79_B          167 AHL-HLSCILLDLVSYHIKGGETESLQIPNT-TVLHL-------------------------------------------  201 (562)
T ss_dssp             TTS-CEEEEEEEESSCCCCSSSCCEEEECCE-EEEEE-------------------------------------------
T ss_pred             hhc-eeeEEEeecccccccccCcccccccCc-ceEEE-------------------------------------------
Confidence            444 458999988876  22 2332211110 12221                                           


Q ss_pred             eEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCcccc
Q 048809          462 DLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESF  541 (878)
Q Consensus       462 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l  541 (878)
                        .+.+..... ..+......+++|+.|++.+....                           |..+...   ...+..+
T Consensus       202 --~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~---------------------------~~~l~~~---~~~l~~l  248 (562)
T 3a79_B          202 --VFHPNSLFS-VQVNMSVNALGHLQLSNIKLNDEN---------------------------CQRLMTF---LSELTRG  248 (562)
T ss_dssp             --EECSSSCCC-CCCEEEESSEEEEEEEEEECCSTT---------------------------HHHHHHH---HHHHHSC
T ss_pred             --EecCccchh-hhhhhcccccceEEEecccccccc---------------------------cchHHHH---HHHHhcc
Confidence              121111111 011111123455666666543200                           0011100   0012233


Q ss_pred             CCccEEEeecCCC----cccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCc
Q 048809          542 CKVKDIRVEWCDK----LKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQL  617 (878)
Q Consensus       542 ~~L~~L~l~~c~~----L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l  617 (878)
                      ++|+.+.+.++.-    +..+++   ....++|++|++++|.....++.....       .....++.|+.+++.... +
T Consensus       249 ~~L~~L~L~~~~l~~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~ip~~~~~-------~~~~~L~~L~~~~~~~~~-~  317 (562)
T 3a79_B          249 PTLLNVTLQHIETTWKCSVKLFQ---FFWPRPVEYLNIYNLTITERIDREEFT-------YSETALKSLMIEHVKNQV-F  317 (562)
T ss_dssp             SSCEEEEEEEEEECHHHHHHHHH---HHTTSSEEEEEEEEEEECSCCCCCCCC-------CCSCSCCEEEEEEEEECC-C
T ss_pred             CcceEEEecCCcCcHHHHHHHHH---hhhcccccEEEEeccEeeccccchhhh-------cccccchheehhhcccce-e
Confidence            4445555444311    111111   112236666666665433334332210       000112333333332221 1


Q ss_pred             ceecCCCc--ccccCCcceEEEecCCCccccccccccccccccceeEEEEecccccccceeeeccccccceeeccCCCCc
Q 048809          618 TSFCTGDL--HFEFPSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPD  695 (878)
Q Consensus       618 ~~~~~~~~--~~~~~~L~~L~l~~C~~l~lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~  695 (878)
                       .++....  ....++|++|++++|.....+.  ...    +++|++|++++|..                         
T Consensus       318 -~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~----l~~L~~L~l~~n~l-------------------------  365 (562)
T 3a79_B          318 -LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPS----PSSFTFLNFTQNVF-------------------------  365 (562)
T ss_dssp             -SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSS----CCCCCEEECCSSCC-------------------------
T ss_pred             -ecChhhhhhhhccCcceEEEccCCCcccccC--ccC----CCCceEEECCCCcc-------------------------
Confidence             1111000  0012457777777754322211  122    67777777777753                         


Q ss_pred             hhhhccccccccCCccEEEEccCCCccc---ccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEccccccc
Q 048809          696 LKQILKQESSHANNLEVLEIYGCDNLIN---LVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMIT  772 (878)
Q Consensus       696 l~~i~~~~~~~l~~L~~L~l~~c~~l~~---l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~  772 (878)
                       ....+..+..+++|++|++++|. ++.   +|..+..+++|+.|+++++ .++...+...+..+++|++|++++|.--.
T Consensus       366 -~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  442 (562)
T 3a79_B          366 -TDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTG  442 (562)
T ss_dssp             -CTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred             -ccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCCc
Confidence             11112344556777777777764 332   2334567777888888773 45542234445667788888887765222


Q ss_pred             cccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccCC-CccCCCcceee
Q 048809          773 EIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSGG-ELSTPNLRKVQ  851 (878)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~~-~~~~~~L~~l~  851 (878)
                      .++..              ..++|+.|+++++ .++.+|..   ...+++|++|++++| .++.+|.+ ...+++|+.++
T Consensus       443 ~~~~~--------------l~~~L~~L~L~~N-~l~~ip~~---~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~  503 (562)
T 3a79_B          443 SVFRC--------------LPPKVKVLDLHNN-RIMSIPKD---VTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIW  503 (562)
T ss_dssp             GGGSS--------------CCTTCSEEECCSS-CCCCCCTT---TTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEE
T ss_pred             chhhh--------------hcCcCCEEECCCC-cCcccChh---hcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEE
Confidence            22221              1267888888776 67777776   457788888888876 56678776 55678888888


Q ss_pred             ccc
Q 048809          852 LKQ  854 (878)
Q Consensus       852 i~~  854 (878)
                      +++
T Consensus       504 l~~  506 (562)
T 3a79_B          504 LHD  506 (562)
T ss_dssp             CCS
T ss_pred             ecC
Confidence            876

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.95  E-value=3.6e-29  Score=287.17  Aligned_cols=188  Identities=15%  Similarity=0.122  Sum_probs=150.6

Q ss_pred             CCcEEEEEeCChHHhhccCC-CCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHhc
Q 048809            2 GGCKVLLTARSHDVLSSKMD-CQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALKN   80 (878)
Q Consensus         2 ~gs~iivTtR~~~v~~~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~~   80 (878)
                      +|||||||||++.|+.. ++ ...+|+|++|+++|||+||+++|+....++++++++++|+++|+|+||||+++|+.|+.
T Consensus       264 ~gs~ilvTTR~~~v~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~  342 (549)
T 2a5y_B          264 LRLRCLVTTRDVEISNA-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEP  342 (549)
T ss_dssp             TTCEEEEEESBGGGGGG-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCS
T ss_pred             CCCEEEEEcCCHHHHHH-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhcc
Confidence            69999999999999995 65 44689999999999999999999643335788999999999999999999999999987


Q ss_pred             CCChHHHHHHHHH-HHccCcchhhhhhhhhcccccCCCCCChHHHHHHHh-----------hhcccC-CccHHHHHHHHh
Q 048809           81 KSSLYVWKDALRQ-LKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFL-----------LIGYSY-IRNVKDLLYHGM  147 (878)
Q Consensus        81 ~~~~~~w~~~l~~-l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~-----------~~~~fp-~~~~~~li~~w~  147 (878)
                      + +. +|.+.+.. ++... ..++++++++||++||+      ++|.||+           |||+|| ++.|.  ++.|+
T Consensus       343 ~-~w-~~~~~l~~~l~~~~-~~~i~~~l~~Sy~~L~~------~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~  411 (549)
T 2a5y_B          343 K-TF-EKMAQLNNKLESRG-LVGVECITPYSYKSLAM------ALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWS  411 (549)
T ss_dssp             S-SH-HHHHHHHHHHHHHC-SSTTCCCSSSSSSSHHH------HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHH
T ss_pred             c-hH-HHHHHhHHHhhccc-HHHHHHHHhcccccccH------HHHHHHhccchhhhhHhhheeeeCCCCeee--eeeee
Confidence            6 32 23233332 22222 34899999999999999      9999999           999999 88887  88999


Q ss_pred             hc--cCccCC---CcHHHHHHHHHHHHHHHHhcccccccc--CCcceehhHHHHHHHHHHHcccc
Q 048809          148 GL--GLFQNI---NTVDEARDRAHTLVDKLKNSCLLLGGW--RSEWFSMHDVVRDVAISIASRDQ  205 (878)
Q Consensus       148 ~~--g~i~~~---~~~~~~~~~~~~~l~~L~~~~l~~~~~--~~~~~~mhdli~~~~~~~~~~e~  205 (878)
                      |+  ||+...   .+.+++++    ++++|+++||++...  ....|+|||+||++|++++.+++
T Consensus       412 a~~~G~i~~~~~~~~~~~~~~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~  472 (549)
T 2a5y_B          412 CVIPVDICSNEEEQLDDEVAD----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT  472 (549)
T ss_dssp             HHSCC-------CCCTHHHHH----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred             eeccceeccCCCCCCHHHHHH----HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence            99  999643   34566665    899999999998763  34579999999999999887654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=8.5e-27  Score=277.45  Aligned_cols=408  Identities=14%  Similarity=0.117  Sum_probs=259.9

Q ss_pred             CCCcEEEeeCCCCC-CCCCCC-CCCCccEEEe-ecCCC------------------------------------------
Q 048809          227 KDCTAISLNNSNIN-ELPQGF-ECPQLKYFRI-HNDHS------------------------------------------  261 (878)
Q Consensus       227 ~~lr~l~l~~~~~~-~l~~~~-~~~~Lr~L~l-~~~~~------------------------------------------  261 (878)
                      .++..|+|+++.+. .+|+.+ .+++|++|++ ++|.+                                          
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            56889999999886 577666 8999999999 55510                                          


Q ss_pred             -----------------------------------CCCCchhhcCCCCCcEEEeeCCCCCC------------------C
Q 048809          262 -----------------------------------LKIPDNFFTGMTELRVLDFTRMHLLA------------------L  288 (878)
Q Consensus       262 -----------------------------------~~l~~~~~~~l~~Lr~L~Ls~~~i~~------------------l  288 (878)
                                                         ..+|.. |+++++|++|+|++|.++.                  +
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                                               016765 5889999999999999987                  8


Q ss_pred             Ccccc--CCCCCcEEEccCCCCC-Cc-ccccCcccCcEEEeeCCC-ccc--chHhhcccc-cCcccccccccCCcEEEcc
Q 048809          289 PSSLG--LLQNLQTLSLDYCELG-DM-AIIGDLKKLVILALRGSD-MKE--LVGEIGQLT-QLRLLIAPILSRLEELYIG  360 (878)
Q Consensus       289 p~~i~--~L~~L~~L~L~~~~l~-~l-~~i~~L~~L~~L~l~~~~-l~~--lp~~i~~L~-~L~~Lip~~l~~L~~L~l~  360 (878)
                      |..++  ++++|++|+|++|.+. .+ ..+++|++|++|++++|. ++.  +|..++++. .+.     .+++|+.|++.
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~-----~l~~L~~L~Ls  556 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED-----TGPKIQIFYMG  556 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTT-----TTTTCCEEECC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccc-----ccCCccEEEee
Confidence            99988  9999999999999854 33 789999999999999997 875  888888775 333     34577888888


Q ss_pred             CCCCCccccccccccccccCcc--cccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhh
Q 048809          361 ESPIEWGKVEGVDGERRNASLH--ELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFR  438 (878)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~  438 (878)
                      +|.+.             ..+.  .++++++|+.|++++|....+| .+..+++|+.|++                    
T Consensus       557 ~N~L~-------------~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~L--------------------  602 (876)
T 4ecn_A          557 YNNLE-------------EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKL--------------------  602 (876)
T ss_dssp             SSCCC-------------BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEEC--------------------
T ss_pred             CCcCC-------------ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEEC--------------------
Confidence            88765             2344  6888889999999888877777 4444555555444                    


Q ss_pred             hhhccCCccccchhHHhhccccceEEecCcCCcccccccCcCCCCCC-CcEEEEccCCCceEEeecccccccccCccccc
Q 048809          439 LMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQ-LKRLEVVKNSNLLCVVDTVDRATALTTAFPVL  517 (878)
Q Consensus       439 ~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L  517 (878)
                                                 +++... .+...+  ..+++ |++|++.++. +..++..   .  .....++|
T Consensus       603 ---------------------------s~N~l~-~lp~~l--~~l~~~L~~L~Ls~N~-L~~lp~~---~--~~~~~~~L  646 (876)
T 4ecn_A          603 ---------------------------DYNQIE-EIPEDF--CAFTDQVEGLGFSHNK-LKYIPNI---F--NAKSVYVM  646 (876)
T ss_dssp             ---------------------------CSSCCS-CCCTTS--CEECTTCCEEECCSSC-CCSCCSC---C--CTTCSSCE
T ss_pred             ---------------------------cCCccc-cchHHH--hhccccCCEEECcCCC-CCcCchh---h--hccccCCC
Confidence                                       433322 222222  23555 7777766653 3332210   0  11123347


Q ss_pred             ceeeccccccccceecCCCCcc--ccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccC
Q 048809          518 ESLLLRHLSNLEKICRGPLAAE--SFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSN  595 (878)
Q Consensus       518 ~~L~L~~~~~L~~~~~~~~~~~--~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  595 (878)
                      +.|+++++.--..++..+...+  .+++|+.|++.+| .+..+|. ..+..+++|+.|++++| .+..++......    
T Consensus       647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~-~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~----  719 (876)
T 4ecn_A          647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPT-ELFATGSPISTIILSNN-LMTSIPENSLKP----  719 (876)
T ss_dssp             EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCH-HHHHTTCCCSEEECCSC-CCSCCCTTSSSC----
T ss_pred             CEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCH-HHHccCCCCCEEECCCC-cCCccChHHhcc----
Confidence            7777766432111111111112  3457888888885 5666654 34567888999999886 344555432210    


Q ss_pred             CCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccc
Q 048809          596 SNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEE  674 (878)
Q Consensus       596 ~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~  674 (878)
                      .......+++|+.|++++| .++.++.......+++|+.|++++| .++ +|..+..     +++|+.|++++|+.    
T Consensus       720 ~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~-----L~~L~~L~Ls~N~~----  788 (876)
T 4ecn_A          720 KDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLN-----SSQLKAFGIRHQRD----  788 (876)
T ss_dssp             TTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGG-----CTTCCEEECCCCBC----
T ss_pred             ccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhc-----CCCCCEEECCCCCC----
Confidence            0001123458888888886 4666664211126788888888874 455 7766553     78888888877653    


Q ss_pred             eeeeccccccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEe
Q 048809          675 LFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINI  748 (878)
Q Consensus       675 ~~~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l  748 (878)
                                     ++.+. +....+..+..+++|+.|++++|.. ..+|..+  .++|+.|++++| .+..+
T Consensus       789 ---------------ls~N~-l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l--~~~L~~LdLs~N-~l~~i  842 (876)
T 4ecn_A          789 ---------------AEGNR-ILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADN-PNISI  842 (876)
T ss_dssp             ---------------TTCCB-CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC--CSSSCEEECCSC-TTCEE
T ss_pred             ---------------ccccc-ccccChHHHhcCCCCCEEECCCCCC-CccCHhh--cCCCCEEECCCC-CCCcc
Confidence                           22221 1112234555677777777777764 6666653  367777777774 34444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=3e-25  Score=262.59  Aligned_cols=134  Identities=18%  Similarity=0.316  Sum_probs=112.6

Q ss_pred             ccCCCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cccCCCCCcEE
Q 048809          225 VLKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SLGLLQNLQTL  301 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L  301 (878)
                      ...++++|++++|.++.+++..  .+++|++|++++|.+..+|.+.|.++.+|++|+|++|.++.+|. .|+++++|++|
T Consensus        74 ~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L  153 (635)
T 4g8a_A           74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL  153 (635)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCee
Confidence            3678999999999999987753  79999999999999999999989999999999999999999875 58999999999


Q ss_pred             EccCCCCCCc---ccccCcccCcEEEeeCCCcccch-HhhcccccCcccccccccCCcEEEccCCCCC
Q 048809          302 SLDYCELGDM---AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLLIAPILSRLEELYIGESPIE  365 (878)
Q Consensus       302 ~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~  365 (878)
                      ++++|.++.+   ..++++++|++|++++|.++.++ ..++.+.+++.+       +..+++..+.+.
T Consensus       154 ~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~-------~~~~~ls~n~l~  214 (635)
T 4g8a_A          154 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL-------NLSLDLSLNPMN  214 (635)
T ss_dssp             ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC-------CCEEECTTCCCC
T ss_pred             ccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh-------hhhhhcccCccc
Confidence            9999998642   67899999999999999998865 457777665543       334555555443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.94  E-value=3.2e-26  Score=263.47  Aligned_cols=180  Identities=16%  Similarity=0.231  Sum_probs=130.2

Q ss_pred             CCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccC
Q 048809          217 LTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGL  294 (878)
Q Consensus       217 ~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~  294 (878)
                      ....|. .+++++++|++++|.++.+++. + .+++|++|++++|.+..++.+.|.++++|++|+|++|.++.+|..  .
T Consensus        12 l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~   88 (520)
T 2z7x_B           12 LIHVPK-DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--P   88 (520)
T ss_dssp             CSSCCC-SCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--C
T ss_pred             cccccc-cccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--c
Confidence            333443 3458999999999999988743 3 899999999999999998766789999999999999999999887  8


Q ss_pred             CCCCcEEEccCCCCCC--c-ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCcccccc
Q 048809          295 LQNLQTLSLDYCELGD--M-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEG  371 (878)
Q Consensus       295 L~~L~~L~L~~~~l~~--l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~  371 (878)
                      +++|++|++++|.++.  + ..++++++|++|++++|.++.  ..++.+++|         +|+.|++.+|.+..     
T Consensus        89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L---------~L~~L~l~~n~l~~-----  152 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHL---------NISKVLLVLGETYG-----  152 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTS---------CEEEEEEEECTTTT-----
T ss_pred             cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccc---------eeeEEEeecccccc-----
Confidence            9999999999999875  2 789999999999999998876  345554443         23777888776620     


Q ss_pred             ccccccccCcccccCCCC-CCEEEeecCCCC-CCCc-chhcccCCceEEEEe
Q 048809          372 VDGERRNASLHELNNLSK-LTSLEILIQDEK-TLPR-DLSFFKMLQRYRILI  420 (878)
Q Consensus       372 ~~~~~~~~~~~~L~~l~~-L~~L~l~~~~~~-~~~~-~~~~l~~L~~L~l~~  420 (878)
                           ....+..+..+.. .-.++++++... .++. .+..+++|+.+++..
T Consensus       153 -----~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  199 (520)
T 2z7x_B          153 -----EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC  199 (520)
T ss_dssp             -----SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEE
T ss_pred             -----cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccc
Confidence                 0223444554442 223444444422 2222 233566777777654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=3.1e-26  Score=272.59  Aligned_cols=135  Identities=21%  Similarity=0.228  Sum_probs=85.0

Q ss_pred             CCccEEEeecCCCC-CCCchhhcCCCCCcEEEe-eCCCCCCC-Cc-----------------------------------
Q 048809          249 PQLKYFRIHNDHSL-KIPDNFFTGMTELRVLDF-TRMHLLAL-PS-----------------------------------  290 (878)
Q Consensus       249 ~~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~L-s~~~i~~l-p~-----------------------------------  290 (878)
                      .+++.|+|+++.+. .+|+. |+++++|++|+| ++|.+... |-                                   
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~-l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGG-GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCEEEEECccCCCCCcCchH-HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            57899999999654 67766 599999999999 77643110 00                                   


Q ss_pred             --------------cc--cCCCCCcEEEccC--CCCCCc-ccccCcccCcEEEeeCCCccc------------------c
Q 048809          291 --------------SL--GLLQNLQTLSLDY--CELGDM-AIIGDLKKLVILALRGSDMKE------------------L  333 (878)
Q Consensus       291 --------------~i--~~L~~L~~L~L~~--~~l~~l-~~i~~L~~L~~L~l~~~~l~~------------------l  333 (878)
                                    .+  .....++.+.+..  |.++.+ ..+++|++|++|++++|.++.                  +
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                          00  1112233333332  334434 668888888888888887776                  6


Q ss_pred             hHhhc--ccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCC-CCC--CCcch
Q 048809          334 VGEIG--QLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQD-EKT--LPRDL  407 (878)
Q Consensus       334 p~~i~--~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~-~~~--~~~~~  407 (878)
                      |..++  +++           +|+.|++.+|.+.            ...+..++++++|+.|++++|. ...  +|..+
T Consensus       482 P~~l~f~~L~-----------~L~~L~Ls~N~l~------------~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i  537 (876)
T 4ecn_A          482 NEELSWSNLK-----------DLTDVELYNCPNM------------TQLPDFLYDLPELQSLNIACNRGISAAQLKADW  537 (876)
T ss_dssp             TSCCCGGGCT-----------TCCEEEEESCTTC------------CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHH
T ss_pred             ChhhhhccCC-----------CCCEEECcCCCCC------------ccChHHHhCCCCCCEEECcCCCCcccccchHHH
Confidence            66654  554           3455577666554            3455677788888888888776 542  55544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=9e-26  Score=264.72  Aligned_cols=318  Identities=16%  Similarity=0.166  Sum_probs=199.1

Q ss_pred             CCCCCCCchhhcCCCCCcEEEeeCCCCCC------------------CCcccc--CCCCCcEEEccCCCCC-Cc-ccccC
Q 048809          259 DHSLKIPDNFFTGMTELRVLDFTRMHLLA------------------LPSSLG--LLQNLQTLSLDYCELG-DM-AIIGD  316 (878)
Q Consensus       259 ~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~l~-~l-~~i~~  316 (878)
                      |.+..+|.. |+++++|++|+|++|.++.                  +|..++  ++++|++|++++|.+. .+ ..+++
T Consensus       193 n~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          193 NNITFVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             CEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred             CCCccCCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence            344458876 5999999999999999988                  999999  9999999999999965 33 78999


Q ss_pred             cccCcEEEeeCCC-ccc--chHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcc--cccCCCCCC
Q 048809          317 LKKLVILALRGSD-MKE--LVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLH--ELNNLSKLT  391 (878)
Q Consensus       317 L~~L~~L~l~~~~-l~~--lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--~L~~l~~L~  391 (878)
                      +++|++|++++|. ++.  +|..+++|..+.     .+++|+.|++.+|.+.             ..+.  .++++++|+
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~-----~l~~L~~L~L~~n~l~-------------~ip~~~~l~~l~~L~  333 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKDDWQALADAP-----VGEKIQIIYIGYNNLK-------------TFPVETSLQKMKKLG  333 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHSG-----GGGTCCEEECCSSCCS-------------SCCCHHHHTTCTTCC
T ss_pred             CCCCCEEECcCCCCCccccchHHHHhhhccc-----cCCCCCEEECCCCcCC-------------ccCchhhhccCCCCC
Confidence            9999999999997 885  999998874333     3367788899988765             2445  789999999


Q ss_pred             EEEeecCCCC-CCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCcCC
Q 048809          392 SLEILIQDEK-TLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLD  470 (878)
Q Consensus       392 ~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~  470 (878)
                      .|++++|... .+| .+..+++|+.|+++                                               ++..
T Consensus       334 ~L~L~~N~l~g~ip-~~~~l~~L~~L~L~-----------------------------------------------~N~l  365 (636)
T 4eco_A          334 MLECLYNQLEGKLP-AFGSEIKLASLNLA-----------------------------------------------YNQI  365 (636)
T ss_dssp             EEECCSCCCEEECC-CCEEEEEESEEECC-----------------------------------------------SSEE
T ss_pred             EEeCcCCcCccchh-hhCCCCCCCEEECC-----------------------------------------------CCcc
Confidence            9999999877 777 55555566655553                                               2221


Q ss_pred             cccccccCcCCCCCC-CcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCcc-------ccC
Q 048809          471 MKSVLYGSDGEGFPQ-LKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAE-------SFC  542 (878)
Q Consensus       471 ~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~-------~l~  542 (878)
                      . .+...+  ..+++ |++|+++++. +..++..    . ....+++|+.|+++++. +....  +..+.       .++
T Consensus       366 ~-~lp~~l--~~l~~~L~~L~Ls~N~-l~~lp~~----~-~~~~l~~L~~L~Ls~N~-l~~~~--p~~l~~~~~~~~~~~  433 (636)
T 4eco_A          366 T-EIPANF--CGFTEQVENLSFAHNK-LKYIPNI----F-DAKSVSVMSAIDFSYNE-IGSVD--GKNFDPLDPTPFKGI  433 (636)
T ss_dssp             E-ECCTTS--EEECTTCCEEECCSSC-CSSCCSC----C-CTTCSSCEEEEECCSSC-TTTTT--TCSSCTTCSSCCCCC
T ss_pred             c-cccHhh--hhhcccCcEEEccCCc-Ccccchh----h-hhcccCccCEEECcCCc-CCCcc--hhhhcccccccccCC
Confidence            1 111112  23555 6666666543 2222210    0 11223456666666542 22110  00111       456


Q ss_pred             CccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecC
Q 048809          543 KVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCT  622 (878)
Q Consensus       543 ~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~  622 (878)
                      +|+.|++.++ ++..+|. ..+..+++|++|+++++. +..++......    .......+++|+.|+++++ .++.++.
T Consensus       434 ~L~~L~Ls~N-~l~~lp~-~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~----~~~~~~~l~~L~~L~Ls~N-~l~~lp~  505 (636)
T 4eco_A          434 NVSSINLSNN-QISKFPK-ELFSTGSPLSSINLMGNM-LTEIPKNSLKD----ENENFKNTYLLTSIDLRFN-KLTKLSD  505 (636)
T ss_dssp             CEEEEECCSS-CCCSCCT-HHHHTTCCCSEEECCSSC-CSBCCSSSSEE----TTEECTTGGGCCEEECCSS-CCCBCCG
T ss_pred             CCCEEECcCC-ccCcCCH-HHHccCCCCCEEECCCCC-CCCcCHHHhcc----ccccccccCCccEEECcCC-cCCccCh
Confidence            7888888875 5666655 345567888888888764 33444322110    0000111336777777665 3445544


Q ss_pred             CCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEeccc
Q 048809          623 GDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYD  669 (878)
Q Consensus       623 ~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~  669 (878)
                      ......+++|+.|++++| .++ +|..+..     +++|+.|++++|+
T Consensus       506 ~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~-----l~~L~~L~Ls~N~  547 (636)
T 4eco_A          506 DFRATTLPYLVGIDLSYN-SFSKFPTQPLN-----SSTLKGFGIRNQR  547 (636)
T ss_dssp             GGSTTTCTTCCEEECCSS-CCSSCCCGGGG-----CSSCCEEECCSCB
T ss_pred             hhhhccCCCcCEEECCCC-CCCCcChhhhc-----CCCCCEEECCCCc
Confidence            211125666666666663 344 5555443     6666666665554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=2.9e-24  Score=242.97  Aligned_cols=343  Identities=17%  Similarity=0.208  Sum_probs=252.1

Q ss_pred             cCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809          226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY  305 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~  305 (878)
                      +.++++|++.++.+..+|....+++|++|++++|.+..++.  |.++++|++|++++|.+..++. ++++++|++|++++
T Consensus        45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~  121 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  121 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence            56799999999999999876689999999999999998887  7999999999999999998887 99999999999999


Q ss_pred             CCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809          306 CELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN  385 (878)
Q Consensus       306 ~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~  385 (878)
                      |.++.++.++++++|++|++++|.+..+|. ++++.+|++|           ++.++ +.              ....+.
T Consensus       122 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L-----------~l~~~-~~--------------~~~~~~  174 (466)
T 1o6v_A          122 NQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQL-----------SFGNQ-VT--------------DLKPLA  174 (466)
T ss_dssp             SCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEE-----------EEEES-CC--------------CCGGGT
T ss_pred             CCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEe-----------ecCCc-cc--------------Cchhhc
Confidence            999988779999999999999998888764 7766665555           44321 11              123366


Q ss_pred             CCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEe
Q 048809          386 NLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCL  465 (878)
Q Consensus       386 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l  465 (878)
                      ++++|+.|+++++....++. +..+++|+.|++..+......                         ....+++|+.|++
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-------------------------~~~~l~~L~~L~l  228 (466)
T 1o6v_A          175 NLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDIT-------------------------PLGILTNLDELSL  228 (466)
T ss_dssp             TCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCG-------------------------GGGGCTTCCEEEC
T ss_pred             cCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccc-------------------------cccccCCCCEEEC
Confidence            77777777777777666543 456677777776532211100                         0124677888888


Q ss_pred             cCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCcc
Q 048809          466 GGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVK  545 (878)
Q Consensus       466 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~  545 (878)
                      +++... .+ +.+  ..+++|++|++.++. +..+.        ....+++|+.|+++++ .++.+    .+...+++|+
T Consensus       229 ~~n~l~-~~-~~l--~~l~~L~~L~l~~n~-l~~~~--------~~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~  290 (466)
T 1o6v_A          229 NGNQLK-DI-GTL--ASLTNLTDLDLANNQ-ISNLA--------PLSGLTKLTELKLGAN-QISNI----SPLAGLTALT  290 (466)
T ss_dssp             CSSCCC-CC-GGG--GGCTTCSEEECCSSC-CCCCG--------GGTTCTTCSEEECCSS-CCCCC----GGGTTCTTCS
T ss_pred             CCCCcc-cc-hhh--hcCCCCCEEECCCCc-cccch--------hhhcCCCCCEEECCCC-ccCcc----ccccCCCccC
Confidence            776532 21 223  357889999998864 32221        3566888999999885 34433    1256789999


Q ss_pred             EEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecCCCc
Q 048809          546 DIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDL  625 (878)
Q Consensus       546 ~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~  625 (878)
                      .|++.+| ++..+++   +..+++|+.|++++|.. ...+.             ...+++|+.|++++| .++.++   .
T Consensus       291 ~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~l-~~~~~-------------~~~l~~L~~L~l~~n-~l~~~~---~  348 (466)
T 1o6v_A          291 NLELNEN-QLEDISP---ISNLKNLTYLTLYFNNI-SDISP-------------VSSLTKLQRLFFYNN-KVSDVS---S  348 (466)
T ss_dssp             EEECCSS-CCSCCGG---GGGCTTCSEEECCSSCC-SCCGG-------------GGGCTTCCEEECCSS-CCCCCG---G
T ss_pred             eEEcCCC-cccCchh---hcCCCCCCEEECcCCcC-CCchh-------------hccCccCCEeECCCC-ccCCch---h
Confidence            9999986 5666655   46889999999999853 33322             124899999999997 455553   2


Q ss_pred             ccccCCcceEEEecCCCccccccccccccccccceeEEEEecccc
Q 048809          626 HFEFPSLEKLKILECPQVKFKSTIHESTKKRFHTIKVLCIEGYDY  670 (878)
Q Consensus       626 ~~~~~~L~~L~l~~C~~l~lp~~~~~~~~~~l~~L~~L~l~~c~~  670 (878)
                      ...+++|+.|++++|..-..+.  +..    +++|+.|++++|+.
T Consensus       349 l~~l~~L~~L~l~~n~l~~~~~--~~~----l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          349 LANLTNINWLSAGHNQISDLTP--LAN----LTRITQLGLNDQAW  387 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG--GTT----CTTCCEEECCCEEE
T ss_pred             hccCCCCCEEeCCCCccCccch--hhc----CCCCCEEeccCCcc
Confidence            5678999999999975444332  344    89999999999985

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=1.3e-24  Score=252.28  Aligned_cols=451  Identities=15%  Similarity=0.141  Sum_probs=243.5

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcccc
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLG  293 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~  293 (878)
                      .....|. ..++++++|++++|.+..+++ .+ .+++|++|++++|.+..++.+.|..+++|++|+|++|.++.+|..  
T Consensus        42 ~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--  118 (562)
T 3a79_B           42 NLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--  118 (562)
T ss_dssp             CCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--
T ss_pred             CCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--
Confidence            3444443 456899999999999999875 33 899999999999999999777789999999999999999999987  


Q ss_pred             CCCCCcEEEccCCCCCCc---ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCC--Cccc
Q 048809          294 LLQNLQTLSLDYCELGDM---AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPI--EWGK  368 (878)
Q Consensus       294 ~L~~L~~L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~--~~~~  368 (878)
                      .+++|++|++++|.++.+   ..++++++|++|++++|.++.  ..++.+.+|         +|+.|++.+|.+  .   
T Consensus       119 ~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L---------~L~~L~L~~n~l~~~---  184 (562)
T 3a79_B          119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHL---------HLSCILLDLVSYHIK---  184 (562)
T ss_dssp             CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTS---------CEEEEEEEESSCCCC---
T ss_pred             ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--Cchhhhhhc---------eeeEEEeeccccccc---
Confidence            899999999999998753   689999999999999998875  234544433         347788888766  3   


Q ss_pred             cccccccccccCcccccCCCCCC--EEEeecCCCCC-CCc-chhcccCCceEEEEecccccccccchhhhhhhhhhhccC
Q 048809          369 VEGVDGERRNASLHELNNLSKLT--SLEILIQDEKT-LPR-DLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASG  444 (878)
Q Consensus       369 ~~~~~~~~~~~~~~~L~~l~~L~--~L~l~~~~~~~-~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~  444 (878)
                               ...+..+..+.. +  .++++.+.... ++. .+..+++|+.+++.....     .+..+....       
T Consensus       185 ---------~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~-----~~~~l~~~~-------  242 (562)
T 3a79_B          185 ---------GGETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE-----NCQRLMTFL-------  242 (562)
T ss_dssp             ---------SSSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST-----THHHHHHHH-------
T ss_pred             ---------ccCcccccccCc-ceEEEEecCccchhhhhhhcccccceEEEeccccccc-----ccchHHHHH-------
Confidence                     122344444431 2  33455554332 222 222556666666653210     000000000       


Q ss_pred             CccccchhHHhhccccceEEecCcCCcccccccCc-CCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeecc
Q 048809          445 ANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSD-GEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLR  523 (878)
Q Consensus       445 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~  523 (878)
                             .....+++++.|++.++.........+. ....++|++|++.++.-...++...     .....++|+.|.+.
T Consensus       243 -------~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~-----~~~~~~~L~~L~~~  310 (562)
T 3a79_B          243 -------SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE-----FTYSETALKSLMIE  310 (562)
T ss_dssp             -------HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCC-----CCCCSCSCCEEEEE
T ss_pred             -------HHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchh-----hhcccccchheehh
Confidence                   0012245555565554432111110000 0113466777766653111111100     00001334444433


Q ss_pred             cccccc-ceecCC-CCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccc
Q 048809          524 HLSNLE-KICRGP-LAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVI  601 (878)
Q Consensus       524 ~~~~L~-~~~~~~-~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~  601 (878)
                      ++..-. .++... ...-..++|+.|++.++. +...+   ....+++|++|+++++......+....            
T Consensus       311 ~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~------------  374 (562)
T 3a79_B          311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGCS------------  374 (562)
T ss_dssp             EEEECCCSSCHHHHHHHHHTCCCSEEEEESSC-CCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCC------------
T ss_pred             hcccceeecChhhhhhhhccCcceEEEccCCC-ccccc---CccCCCCceEEECCCCccccchhhhhc------------
Confidence            322110 000000 000011346666666653 22221   113556666666666543332332222            


Q ss_pred             cccccceeecccCCCcceecCC-CcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeec
Q 048809          602 ELTQLTTLELCSLPQLTSFCTG-DLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETV  679 (878)
Q Consensus       602 ~~~~L~~L~L~~c~~l~~~~~~-~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~  679 (878)
                      .+++|+.|+++++ .++.++.. .....+++|++|++++|.--. +|...+..    +++|+.|++++|.. ++..    
T Consensus       375 ~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~----l~~L~~L~l~~n~l-~~~~----  444 (562)
T 3a79_B          375 TLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW----AESILVLNLSSNML-TGSV----  444 (562)
T ss_dssp             SCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC----CTTCCEEECCSSCC-CGGG----
T ss_pred             ccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC----cccCCEEECCCCCC-Ccch----
Confidence            2566666666664 33332210 012345666666666644333 55554444    56666666666653 0000    


Q ss_pred             cccccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhhhhcc
Q 048809          680 ENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVR  759 (878)
Q Consensus       680 ~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~  759 (878)
                                           +..+  .++|+.|++++| .++.+|..+..+++|+.|++++ ++++.++. ..+..+++
T Consensus       445 ---------------------~~~l--~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~-~~~~~l~~  498 (562)
T 3a79_B          445 ---------------------FRCL--PPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS-NQLKSVPD-GVFDRLTS  498 (562)
T ss_dssp             ---------------------GSSC--CTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS-SCCCCCCT-TSTTTCTT
T ss_pred             ---------------------hhhh--cCcCCEEECCCC-cCcccChhhcCCCCCCEEECCC-CCCCCCCH-HHHhcCCC
Confidence                                 0111  145666666665 3455665555666666666665 45555432 23455666


Q ss_pred             ceEEEEcccc
Q 048809          760 LKQMKIFHCK  769 (878)
Q Consensus       760 L~~L~i~~C~  769 (878)
                      |+.|++++++
T Consensus       499 L~~L~l~~N~  508 (562)
T 3a79_B          499 LQYIWLHDNP  508 (562)
T ss_dssp             CCCEECCSCC
T ss_pred             CCEEEecCCC
Confidence            6666666644

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=2.7e-23  Score=234.98  Aligned_cols=122  Identities=18%  Similarity=0.284  Sum_probs=103.9

Q ss_pred             CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEee
Q 048809          247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALR  326 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~  326 (878)
                      .++++++|++.++.+..+|.  +..+++|++|++++|.+..+|. ++.+++|++|++++|.++.+..++++++|++|+++
T Consensus        44 ~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~  120 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF  120 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             HhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECC
Confidence            46799999999999888886  6899999999999999999987 99999999999999999988559999999999999


Q ss_pred             CCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeec
Q 048809          327 GSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILI  397 (878)
Q Consensus       327 ~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~  397 (878)
                      +|.++.+|. +++++           +|+.|++.+|.+.              .+..+..+++|+.|++++
T Consensus       121 ~n~l~~~~~-~~~l~-----------~L~~L~l~~n~l~--------------~~~~~~~l~~L~~L~l~~  165 (466)
T 1o6v_A          121 NNQITDIDP-LKNLT-----------NLNRLELSSNTIS--------------DISALSGLTSLQQLSFGN  165 (466)
T ss_dssp             SSCCCCCGG-GTTCT-----------TCSEEEEEEEEEC--------------CCGGGTTCTTCSEEEEEE
T ss_pred             CCCCCCChH-HcCCC-----------CCCEEECCCCccC--------------CChhhccCCcccEeecCC
Confidence            999998876 65544           5566677777554              134588899999999964

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=1.6e-23  Score=234.68  Aligned_cols=159  Identities=19%  Similarity=0.201  Sum_probs=129.6

Q ss_pred             cCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809          226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY  305 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~  305 (878)
                      +.++++|+++++.++.+|....+++|++|++++|.+..+|   |+.+++|++|++++|.++.+|  ++.+++|++|++++
T Consensus        41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~  115 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT  115 (457)
T ss_dssp             HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred             cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence            6789999999999999885558999999999999888886   689999999999999998885  89999999999999


Q ss_pred             CCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809          306 CELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN  385 (878)
Q Consensus       306 ~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~  385 (878)
                      |.++.++ ++++++|++|++++|.++.+|  ++++           ++|+.|++.+|...            .. + .++
T Consensus       116 N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l-----------~~L~~L~l~~n~~~------------~~-~-~~~  167 (457)
T 3bz5_A          116 NKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHN-----------TQLTELDCHLNKKI------------TK-L-DVT  167 (457)
T ss_dssp             SCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTC-----------TTCCEEECTTCSCC------------CC-C-CCT
T ss_pred             CcCCeec-CCCCCcCCEEECCCCccceec--cccC-----------CcCCEEECCCCCcc------------cc-c-ccc
Confidence            9988775 899999999999999888874  4443           45677788877432            01 1 467


Q ss_pred             CCCCCCEEEeecCCCCCCCcchhcccCCceEEEE
Q 048809          386 NLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL  419 (878)
Q Consensus       386 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~  419 (878)
                      .+++|+.|++++|....+|  +..+++|+.|++.
T Consensus       168 ~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~  199 (457)
T 3bz5_A          168 PQTQLTTLDCSFNKITELD--VSQNKLLNRLNCD  199 (457)
T ss_dssp             TCTTCCEEECCSSCCCCCC--CTTCTTCCEEECC
T ss_pred             cCCcCCEEECCCCccceec--cccCCCCCEEECc
Confidence            8889999999999887776  4456666666553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.91  E-value=4.6e-24  Score=238.90  Aligned_cols=85  Identities=14%  Similarity=0.101  Sum_probs=33.4

Q ss_pred             CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCC-CCCccccCCCCC-------------cEEEccCCCCCCcc
Q 048809          247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLL-ALPSSLGLLQNL-------------QTLSLDYCELGDMA  312 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L-------------~~L~L~~~~l~~l~  312 (878)
                      +..+||+|++++|.++.+|+++ +++++|++|++++|.+. .+|.+++++++|             ++|++++|.++.++
T Consensus         9 ~~~~L~~L~l~~n~l~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLTEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             ccccchhhhcccCchhhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            3455556666655555555553 56666666666666553 456656555543             56666666555543


Q ss_pred             cccCcccCcEEEeeCCCcccch
Q 048809          313 IIGDLKKLVILALRGSDMKELV  334 (878)
Q Consensus       313 ~i~~L~~L~~L~l~~~~l~~lp  334 (878)
                      .+  ..+|++|++++|.++.+|
T Consensus        88 ~~--~~~L~~L~l~~n~l~~lp  107 (454)
T 1jl5_A           88 EL--PPHLESLVASCNSLTELP  107 (454)
T ss_dssp             SC--CTTCSEEECCSSCCSSCC
T ss_pred             CC--cCCCCEEEccCCcCCccc
Confidence            32  245666666666555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=3.2e-23  Score=234.29  Aligned_cols=149  Identities=16%  Similarity=0.308  Sum_probs=107.0

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCC-CC-CccccCCCCCcEEEccCCC
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLL-AL-PSSLGLLQNLQTLSLDYCE  307 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~-~l-p~~i~~L~~L~~L~L~~~~  307 (878)
                      +.++..++.++.+|.  -.++|++|++++|.+..++...|.++++|++|++++|.+. .+ |..|..+++|++|+|++|.
T Consensus        13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~   90 (455)
T 3v47_A           13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ   90 (455)
T ss_dssp             TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred             cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence            456777777888887  2378888999888888876666788899999999988885 45 5668888899999999888


Q ss_pred             CCCc--ccccCcccCcEEEeeCCCccc-chHh--hcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcc
Q 048809          308 LGDM--AIIGDLKKLVILALRGSDMKE-LVGE--IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLH  382 (878)
Q Consensus       308 l~~l--~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  382 (878)
                      ++.+  ..++++++|++|++++|.++. .|..  ++++           ++|+.|++.+|.+.            ...+.
T Consensus        91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l-----------~~L~~L~L~~n~l~------------~~~~~  147 (455)
T 3v47_A           91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL-----------TSLEMLVLRDNNIK------------KIQPA  147 (455)
T ss_dssp             TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTC-----------TTCCEEECCSSBCC------------SCCCC
T ss_pred             cCccChhhccCcccCCEEeCCCCCCCccccCcccccCc-----------ccCCEEECCCCccC------------ccCcc
Confidence            7754  678888899999998887765 3332  4433           34556677776654            11222


Q ss_pred             c-ccCCCCCCEEEeecCCCCCC
Q 048809          383 E-LNNLSKLTSLEILIQDEKTL  403 (878)
Q Consensus       383 ~-L~~l~~L~~L~l~~~~~~~~  403 (878)
                      . +.++++|+.|++++|.....
T Consensus       148 ~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A          148 SFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             GGGGGCTTCCEEECTTCCBSCC
T ss_pred             cccCCCCcccEEeCCCCccccc
Confidence            2 66777777777777765443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=3.7e-23  Score=233.73  Aligned_cols=366  Identities=16%  Similarity=0.210  Sum_probs=238.9

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCC-CCC-CCCCccEEEeecCCCC-CCCchhhcCCCCCcEEEeeCCCCCCC-Ccc
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELP-QGF-ECPQLKYFRIHNDHSL-KIPDNFFTGMTELRVLDFTRMHLLAL-PSS  291 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~-~~~-~~~~Lr~L~l~~~~~~-~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~  291 (878)
                      .....|.  .++++++|++++|.++.++ ..+ .+++|++|++++|.+. .++...|..+++|++|+|++|.+..+ |..
T Consensus        21 ~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   98 (455)
T 3v47_A           21 GLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA   98 (455)
T ss_dssp             CCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred             CcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh
Confidence            4444554  6789999999999999874 444 8999999999999765 67777789999999999999999876 788


Q ss_pred             ccCCCCCcEEEccCCCCCC--ccc--ccCcccCcEEEeeCCCcccc-hHh-hcccccCcccccccccCCcEEEccCCCCC
Q 048809          292 LGLLQNLQTLSLDYCELGD--MAI--IGDLKKLVILALRGSDMKEL-VGE-IGQLTQLRLLIAPILSRLEELYIGESPIE  365 (878)
Q Consensus       292 i~~L~~L~~L~L~~~~l~~--l~~--i~~L~~L~~L~l~~~~l~~l-p~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~  365 (878)
                      ++++++|++|++++|.++.  +..  ++++++|++|++++|.++.+ |.. +++++           +|+.|++.+|.+.
T Consensus        99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-----------~L~~L~L~~n~l~  167 (455)
T 3v47_A           99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR-----------RFHVLDLTFNKVK  167 (455)
T ss_dssp             TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT-----------TCCEEECTTCCBS
T ss_pred             ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC-----------cccEEeCCCCccc
Confidence            9999999999999999886  443  99999999999999988876 444 55544           5667788888765


Q ss_pred             ccccccccccccccCcccccCC--CCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhcc
Q 048809          366 WGKVEGVDGERRNASLHELNNL--SKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVAS  443 (878)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~L~~l--~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l  443 (878)
                      .            .....+..+  .+|+.|+++++....++.........                              
T Consensus       168 ~------------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~------------------------------  205 (455)
T 3v47_A          168 S------------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC------------------------------  205 (455)
T ss_dssp             C------------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH------------------------------
T ss_pred             c------------cChhhhhccccccccccccccCcccccchhhcccccc------------------------------
Confidence            1            222333333  57888998888776655321000000                              


Q ss_pred             CCccccchhHHhhccccceEEecCcCCcccccccCcC-CCCCCCcEEEEccCCCceEEee------cccccccccCcccc
Q 048809          444 GANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDG-EGFPQLKRLEVVKNSNLLCVVD------TVDRATALTTAFPV  516 (878)
Q Consensus       444 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~~------~~~~~~~~~~~~~~  516 (878)
                              .....+++|++|+++++.........+.. ...++|+.|++.++........      ...... .....++
T Consensus       206 --------~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  276 (455)
T 3v47_A          206 --------GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF-KGLEASG  276 (455)
T ss_dssp             --------CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT-GGGTTSC
T ss_pred             --------ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc-ccccccC
Confidence                    00001233444444433221111110000 0124444444444322111000      000000 1122467


Q ss_pred             cceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhh-hcccccccccC
Q 048809          517 LESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVI-FAAERGDESSN  595 (878)
Q Consensus       517 L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~~~  595 (878)
                      |+.|+++++. +....  +..++.+++|+.|++.++ ++..+++. .+.++++|++|++++|.. ..+ +....      
T Consensus       277 L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~l-~~~~~~~~~------  344 (455)
T 3v47_A          277 VKTCDLSKSK-IFALL--KSVFSHFTDLEQLTLAQN-EINKIDDN-AFWGLTHLLKLNLSQNFL-GSIDSRMFE------  344 (455)
T ss_dssp             CCEEECCSSC-CCEEC--TTTTTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSCC-CEECGGGGT------
T ss_pred             ceEEEecCcc-ccccc--hhhcccCCCCCEEECCCC-cccccChh-HhcCcccCCEEECCCCcc-CCcChhHhc------
Confidence            8888888753 33331  223567888999999885 56666543 457789999999998754 333 32222      


Q ss_pred             CCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccc
Q 048809          596 SNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDY  670 (878)
Q Consensus       596 ~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~  670 (878)
                            .+++|+.|+++++ .++.+... ....+++|++|++++| .++ +|...+..    +++|+.|++++|+.
T Consensus       345 ------~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~----l~~L~~L~l~~N~l  407 (455)
T 3v47_A          345 ------NLDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELALDTN-QLKSVPDGIFDR----LTSLQKIWLHTNPW  407 (455)
T ss_dssp             ------TCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTT----CTTCCEEECCSSCB
T ss_pred             ------CcccCCEEECCCC-cccccChh-hccccccccEEECCCC-ccccCCHhHhcc----CCcccEEEccCCCc
Confidence                  3899999999987 45555332 3457899999999994 566 88777776    99999999999997

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=1.6e-23  Score=234.52  Aligned_cols=115  Identities=16%  Similarity=0.061  Sum_probs=57.4

Q ss_pred             CCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCC-C-cccccCcccC-------------cEEEeeCCCcccchH
Q 048809          271 GMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELG-D-MAIIGDLKKL-------------VILALRGSDMKELVG  335 (878)
Q Consensus       271 ~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~-~-l~~i~~L~~L-------------~~L~l~~~~l~~lp~  335 (878)
                      +..+||+|++++|.+..+|++|+++++|++|++++|.+. . +..++++++|             ++|++++|.++.+|.
T Consensus         9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~   88 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE   88 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred             ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence            568999999999999999999999999999999999865 3 4778888875             778887777776665


Q ss_pred             hhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCce
Q 048809          336 EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQR  415 (878)
Q Consensus       336 ~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~  415 (878)
                      .              .++|+.|++++|.+..             .+.   .+++|+.|++++|....+|..   .++|+.
T Consensus        89 ~--------------~~~L~~L~l~~n~l~~-------------lp~---~~~~L~~L~l~~n~l~~l~~~---~~~L~~  135 (454)
T 1jl5_A           89 L--------------PPHLESLVASCNSLTE-------------LPE---LPQSLKSLLVDNNNLKALSDL---PPLLEY  135 (454)
T ss_dssp             C--------------CTTCSEEECCSSCCSS-------------CCC---CCTTCCEEECCSSCCSCCCSC---CTTCCE
T ss_pred             C--------------cCCCCEEEccCCcCCc-------------ccc---ccCCCcEEECCCCccCcccCC---CCCCCE
Confidence            1              2355666776665541             111   125677777777766655432   134555


Q ss_pred             EEE
Q 048809          416 YRI  418 (878)
Q Consensus       416 L~l  418 (878)
                      |++
T Consensus       136 L~L  138 (454)
T 1jl5_A          136 LGV  138 (454)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=8.7e-23  Score=228.75  Aligned_cols=120  Identities=21%  Similarity=0.274  Sum_probs=99.5

Q ss_pred             CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEee
Q 048809          247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALR  326 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~  326 (878)
                      .+++|++|++++|.+..+| + |..+++|++|++++|.++.+|  ++.+++|++|++++|.++.++ ++++++|++|+++
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~  114 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCD  114 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECC
T ss_pred             HcCCCCEEEccCCCcccCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECC
Confidence            5789999999999888887 3 689999999999999999886  899999999999999988774 8999999999999


Q ss_pred             CCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCC
Q 048809          327 GSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQD  399 (878)
Q Consensus       327 ~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~  399 (878)
                      +|.++.+|  ++++           ++|+.|++.+|.+.            .  + .++.+++|+.|+++.|.
T Consensus       115 ~N~l~~l~--~~~l-----------~~L~~L~l~~N~l~------------~--l-~l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          115 TNKLTKLD--VSQN-----------PLLTYLNCARNTLT------------E--I-DVSHNTQLTELDCHLNK  159 (457)
T ss_dssp             SSCCSCCC--CTTC-----------TTCCEEECTTSCCS------------C--C-CCTTCTTCCEEECTTCS
T ss_pred             CCcCCeec--CCCC-----------CcCCEEECCCCccc------------e--e-ccccCCcCCEEECCCCC
Confidence            99888875  4443           45667788887765            1  1 36778888888888773

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=1.5e-22  Score=219.98  Aligned_cols=165  Identities=18%  Similarity=0.281  Sum_probs=119.4

Q ss_pred             ccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEcc
Q 048809          225 VLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLD  304 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~  304 (878)
                      .+++++++++.++.+..++....+++|++|++++|.+..++.  |..+++|++|++++|.+..+| .+..+++|++|+++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN  118 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred             hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence            467788999998888888775578888889888888888776  688888888888888888775 58888888888888


Q ss_pred             CCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809          305 YCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL  384 (878)
Q Consensus       305 ~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  384 (878)
                      +|.++.++.+.++++|++|++++|.....+..++++           ++|+.|++.++.+.              ....+
T Consensus       119 ~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l-----------~~L~~L~l~~~~~~--------------~~~~~  173 (347)
T 4fmz_A          119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNM-----------TGLNYLTVTESKVK--------------DVTPI  173 (347)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTC-----------TTCCEEECCSSCCC--------------CCGGG
T ss_pred             CCcccCchhhccCCceeEEECCCCCCcccccchhhC-----------CCCcEEEecCCCcC--------------Cchhh
Confidence            888887766888888888888888333323334433           34556677766554              11226


Q ss_pred             cCCCCCCEEEeecCCCCCCCcchhcccCCceEEE
Q 048809          385 NNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRI  418 (878)
Q Consensus       385 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l  418 (878)
                      ..+++|+.|+++++....++. +..+++|+.+++
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l  206 (347)
T 4fmz_A          174 ANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTA  206 (347)
T ss_dssp             GGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEEC
T ss_pred             ccCCCCCEEEccCCccccccc-ccCCCccceeec
Confidence            677788888888777666554 334444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.90  E-value=4.6e-22  Score=226.03  Aligned_cols=314  Identities=18%  Similarity=0.213  Sum_probs=216.3

Q ss_pred             CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCC
Q 048809          229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCE  307 (878)
Q Consensus       229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~  307 (878)
                      -+.++.+++.++.+|..+ .+++++|++++|.+..++...|.++++|++|+|++|.+..+ |..|+++++|++|+|++|.
T Consensus        13 ~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            357888888888888765 36899999999999888877789999999999999999876 7889999999999999999


Q ss_pred             CCCc--ccccCcccCcEEEeeCCCcccch-HhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809          308 LGDM--AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL  384 (878)
Q Consensus       308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  384 (878)
                      ++.+  ..++++++|++|++++|.+..++ ..++++.           +|+.|++.+|.+.            ......+
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----------~L~~L~l~~n~l~------------~~~~~~~  148 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-----------NLKSLEVGDNDLV------------YISHRAF  148 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-----------TCCEEEECCTTCC------------EECTTSS
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccc-----------cCCEEECCCCccc------------eeChhhc
Confidence            8876  45889999999999999887764 3455444           5566677777665            2234567


Q ss_pred             cCCCCCCEEEeecCCCCCCCcc-hhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceE
Q 048809          385 NNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDL  463 (878)
Q Consensus       385 ~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L  463 (878)
                      ..+++|+.|++++|....++.. +..+++|+.|++                                             
T Consensus       149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l---------------------------------------------  183 (477)
T 2id5_A          149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL---------------------------------------------  183 (477)
T ss_dssp             TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE---------------------------------------------
T ss_pred             cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC---------------------------------------------
Confidence            7888888888888877766643 223333333333                                             


Q ss_pred             EecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCC
Q 048809          464 CLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCK  543 (878)
Q Consensus       464 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~  543 (878)
                        .++.... +. ......+++|++|++.++..+..++                               ..   .....+
T Consensus       184 --~~n~i~~-~~-~~~~~~l~~L~~L~l~~~~~~~~~~-------------------------------~~---~~~~~~  225 (477)
T 2id5_A          184 --RHLNINA-IR-DYSFKRLYRLKVLEISHWPYLDTMT-------------------------------PN---CLYGLN  225 (477)
T ss_dssp             --ESCCCCE-EC-TTCSCSCTTCCEEEEECCTTCCEEC-------------------------------TT---TTTTCC
T ss_pred             --CCCcCcE-eC-hhhcccCcccceeeCCCCccccccC-------------------------------cc---cccCcc
Confidence              3222111 10 1111235566666665554333221                               11   112336


Q ss_pred             ccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecCC
Q 048809          544 VKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTG  623 (878)
Q Consensus       544 L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~  623 (878)
                      |+.|++.+| +++.++. ..+.++++|+.|+++++. +..++..           .+..+++|+.|+++++ .++.+...
T Consensus       226 L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~-----------~~~~l~~L~~L~L~~n-~l~~~~~~  290 (477)
T 2id5_A          226 LTSLSITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTIEGS-----------MLHELLRLQEIQLVGG-QLAVVEPY  290 (477)
T ss_dssp             CSEEEEESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEECTT-----------SCTTCTTCCEEECCSS-CCSEECTT
T ss_pred             ccEEECcCC-cccccCH-HHhcCccccCeeECCCCc-CCccChh-----------hccccccCCEEECCCC-ccceECHH
Confidence            777777775 5666653 245678888888888865 3333322           1223888999999886 45555432


Q ss_pred             CcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccc
Q 048809          624 DLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDY  670 (878)
Q Consensus       624 ~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~  670 (878)
                       ....+++|+.|++++| .++ +|...+..    +++|+.|++++|+.
T Consensus       291 -~~~~l~~L~~L~L~~N-~l~~~~~~~~~~----l~~L~~L~l~~N~l  332 (477)
T 2id5_A          291 -AFRGLNYLRVLNVSGN-QLTTLEESVFHS----VGNLETLILDSNPL  332 (477)
T ss_dssp             -TBTTCTTCCEEECCSS-CCSCCCGGGBSC----GGGCCEEECCSSCE
T ss_pred             -HhcCcccCCEEECCCC-cCceeCHhHcCC----CcccCEEEccCCCc
Confidence             3457899999999995 566 88777777    89999999999986

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.89  E-value=8e-22  Score=214.12  Aligned_cols=303  Identities=16%  Similarity=0.179  Sum_probs=193.9

Q ss_pred             CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEee
Q 048809          247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALR  326 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~  326 (878)
                      .+++|++|+++++.+..++.  |..+++|++|++++|.+..+|. +..+++|++|++++|.++.++.++++++|++|+++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLN  118 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECT
T ss_pred             hcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECc
Confidence            56677777777777777764  5777777777777777777766 77777777777777777777677777777777777


Q ss_pred             CCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCcc
Q 048809          327 GSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRD  406 (878)
Q Consensus       327 ~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~  406 (878)
                      +|.+..+|. +.++           ++|+.|++.+|...             ..+..+..+++|+.|+++++....++. 
T Consensus       119 ~n~i~~~~~-~~~l-----------~~L~~L~l~~n~~~-------------~~~~~~~~l~~L~~L~l~~~~~~~~~~-  172 (347)
T 4fmz_A          119 EDNISDISP-LANL-----------TKMYSLNLGANHNL-------------SDLSPLSNMTGLNYLTVTESKVKDVTP-  172 (347)
T ss_dssp             TSCCCCCGG-GTTC-----------TTCCEEECTTCTTC-------------CCCGGGTTCTTCCEEECCSSCCCCCGG-
T ss_pred             CCcccCchh-hccC-----------CceeEEECCCCCCc-------------ccccchhhCCCCcEEEecCCCcCCchh-
Confidence            777776665 4433           34555666666332             123346777777777777777666655 


Q ss_pred             hhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCcCCcccccccCcCCCCCCC
Q 048809          407 LSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQL  486 (878)
Q Consensus       407 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L  486 (878)
                      +..+++|+.|++..+.....                        .. ...+++|+.|++.++.... ..+ +  ..+++|
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~------------------------~~-~~~l~~L~~L~l~~n~l~~-~~~-~--~~~~~L  223 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIEDI------------------------SP-LASLTSLHYFTAYVNQITD-ITP-V--ANMTRL  223 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCCC------------------------GG-GGGCTTCCEEECCSSCCCC-CGG-G--GGCTTC
T ss_pred             hccCCCCCEEEccCCccccc------------------------cc-ccCCCccceeecccCCCCC-Cch-h--hcCCcC
Confidence            55677777777643221110                        00 2245677777777654322 111 2  346777


Q ss_pred             cEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhh
Q 048809          487 KRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRG  566 (878)
Q Consensus       487 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~  566 (878)
                      ++|++.++. +..++        ....+++|+.|+++++ .++.+    .....+++|+.|++.+| ++..++   .+..
T Consensus       224 ~~L~l~~n~-l~~~~--------~~~~l~~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~l~~n-~l~~~~---~~~~  285 (347)
T 4fmz_A          224 NSLKIGNNK-ITDLS--------PLANLSQLTWLEIGTN-QISDI----NAVKDLTKLKMLNVGSN-QISDIS---VLNN  285 (347)
T ss_dssp             CEEECCSSC-CCCCG--------GGTTCTTCCEEECCSS-CCCCC----GGGTTCTTCCEEECCSS-CCCCCG---GGGG
T ss_pred             CEEEccCCc-cCCCc--------chhcCCCCCEEECCCC-ccCCC----hhHhcCCCcCEEEccCC-ccCCCh---hhcC
Confidence            777777763 32221        3456777788887775 34433    23456778888888876 555553   3467


Q ss_pred             ccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCC
Q 048809          567 LQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECP  641 (878)
Q Consensus       567 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~  641 (878)
                      +++|++|++++|......+....            .+++|+.|++++|+ ++.++.   ...+++|++|++++|+
T Consensus       286 l~~L~~L~L~~n~l~~~~~~~l~------------~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          286 LSQLNSLFLNNNQLGNEDMEVIG------------GLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV  344 (347)
T ss_dssp             CTTCSEEECCSSCCCGGGHHHHH------------TCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred             CCCCCEEECcCCcCCCcChhHhh------------ccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence            78888888888754433333222            37888888888875 555443   5578888888888764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.89  E-value=3.3e-22  Score=220.79  Aligned_cols=306  Identities=16%  Similarity=0.224  Sum_probs=206.9

Q ss_pred             CCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCCCc--ccccCcccCc
Q 048809          245 GFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLV  321 (878)
Q Consensus       245 ~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~  321 (878)
                      ...++++++|++.++.+..+|..+|..+++|++|++++|.+..+| ..++.+++|++|++++|.++.+  ..++++++|+
T Consensus        41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           41 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            345678888888888888888887788888888888888887765 4778888888888888887754  4578888888


Q ss_pred             EEEeeCCCcccchHhh-cccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCC
Q 048809          322 ILALRGSDMKELVGEI-GQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDE  400 (878)
Q Consensus       322 ~L~l~~~~l~~lp~~i-~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~  400 (878)
                      +|++++|.++.+|.++ ++++           +|+.|++.+|.+.            ......++.+++|+.|++++|..
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~-----------~L~~L~L~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l  177 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTP-----------KLTTLSMSNNNLE------------RIEDDTFQATTSLQNLQLSSNRL  177 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCC------------BCCTTTTSSCTTCCEEECCSSCC
T ss_pred             EEECCCCccCcCCHHHhcCCC-----------CCcEEECCCCccC------------ccChhhccCCCCCCEEECCCCcC
Confidence            8888888888777653 5443           4556677777654            22334567778888888888776


Q ss_pred             CCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCcCCcccccccCcC
Q 048809          401 KTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDG  480 (878)
Q Consensus       401 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  480 (878)
                      ..++  +..+++|+                                               .|+++++...     .+  
T Consensus       178 ~~~~--~~~l~~L~-----------------------------------------------~L~l~~n~l~-----~~--  201 (390)
T 3o6n_A          178 THVD--LSLIPSLF-----------------------------------------------HANVSYNLLS-----TL--  201 (390)
T ss_dssp             SBCC--GGGCTTCS-----------------------------------------------EEECCSSCCS-----EE--
T ss_pred             Cccc--cccccccc-----------------------------------------------eeeccccccc-----cc--
Confidence            6543  22334444                                               4444332211     11  


Q ss_pred             CCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccc
Q 048809          481 EGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFP  560 (878)
Q Consensus       481 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~  560 (878)
                      ...++|++|++.++. +..+         ....+++|+.|+++++ .++..    ..+..+++|+.|++.++ .+..+++
T Consensus       202 ~~~~~L~~L~l~~n~-l~~~---------~~~~~~~L~~L~l~~n-~l~~~----~~l~~l~~L~~L~Ls~n-~l~~~~~  265 (390)
T 3o6n_A          202 AIPIAVEELDASHNS-INVV---------RGPVNVELTILKLQHN-NLTDT----AWLLNYPGLVEVDLSYN-ELEKIMY  265 (390)
T ss_dssp             ECCSSCSEEECCSSC-CCEE---------ECCCCSSCCEEECCSS-CCCCC----GGGGGCTTCSEEECCSS-CCCEEES
T ss_pred             CCCCcceEEECCCCe-eeec---------cccccccccEEECCCC-CCccc----HHHcCCCCccEEECCCC-cCCCcCh
Confidence            123567777776653 3333         2233567777777764 33332    23567788888888885 5665544


Q ss_pred             hhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecC
Q 048809          561 LVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILEC  640 (878)
Q Consensus       561 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C  640 (878)
                      . .+..+++|++|+++++. +..++....            .+++|+.|+++++ .++.++.  ....+++|++|++++|
T Consensus       266 ~-~~~~l~~L~~L~L~~n~-l~~~~~~~~------------~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N  328 (390)
T 3o6n_A          266 H-PFVKMQRLERLYISNNR-LVALNLYGQ------------PIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHN  328 (390)
T ss_dssp             G-GGTTCSSCCEEECCSSC-CCEEECSSS------------CCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSS
T ss_pred             h-HccccccCCEEECCCCc-CcccCcccC------------CCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCC
Confidence            2 45778899999998864 445543332            3889999999987 5666654  2457899999999986


Q ss_pred             CCcc-ccccccccccccccceeEEEEecccc
Q 048809          641 PQVK-FKSTIHESTKKRFHTIKVLCIEGYDY  670 (878)
Q Consensus       641 ~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~  670 (878)
                      + ++ +|.   ..    +++|+.|++++|+.
T Consensus       329 ~-i~~~~~---~~----~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          329 S-IVTLKL---ST----HHTLKNLTLSHNDW  351 (390)
T ss_dssp             C-CCCCCC---CT----TCCCSEEECCSSCE
T ss_pred             c-cceeCc---hh----hccCCEEEcCCCCc
Confidence            5 45 653   23    88999999999986

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1.7e-21  Score=227.22  Aligned_cols=307  Identities=16%  Similarity=0.217  Sum_probs=215.3

Q ss_pred             CCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCCCc--ccccCcccCc
Q 048809          245 GFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLV  321 (878)
Q Consensus       245 ~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~  321 (878)
                      .+.+.+++.|++.++.+..+|..+|..+++|++|+|++|.+..+| ..|+.+++|++|+|++|.++.+  ..++++++|+
T Consensus        47 ~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           47 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             SGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            446788999999999888899888899999999999999998775 4889999999999999998765  4578999999


Q ss_pred             EEEeeCCCcccchHhh-cccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCC
Q 048809          322 ILALRGSDMKELVGEI-GQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDE  400 (878)
Q Consensus       322 ~L~l~~~~l~~lp~~i-~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~  400 (878)
                      +|++++|.++.+|..+ ++++           +|+.|++.+|.+.            ...+..++.+++|+.|++++|..
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~-----------~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~N~l  183 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTP-----------KLTTLSMSNNNLE------------RIEDDTFQATTSLQNLQLSSNRL  183 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCC------------BCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EEEeeCCCCCCCCHHHhccCC-----------CCCEEEeeCCcCC------------CCChhhhhcCCcCcEEECcCCCC
Confidence            9999999888888763 5544           5566688877665            23345678888999999988876


Q ss_pred             CCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCcCCcccccccCcC
Q 048809          401 KTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDG  480 (878)
Q Consensus       401 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  480 (878)
                      ..++.  ..+++|                                               +.|+++++...     .+  
T Consensus       184 ~~~~~--~~l~~L-----------------------------------------------~~L~l~~n~l~-----~l--  207 (597)
T 3oja_B          184 THVDL--SLIPSL-----------------------------------------------FHANVSYNLLS-----TL--  207 (597)
T ss_dssp             SBCCG--GGCTTC-----------------------------------------------SEEECCSSCCS-----EE--
T ss_pred             CCcCh--hhhhhh-----------------------------------------------hhhhcccCccc-----cc--
Confidence            65542  234444                                               44444433211     11  


Q ss_pred             CCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccc
Q 048809          481 EGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFP  560 (878)
Q Consensus       481 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~  560 (878)
                      ...++|++|+++++. +..++         ...+++|+.|+++++ .++..    ..+..+++|+.|++.++ .+..+++
T Consensus       208 ~~~~~L~~L~ls~n~-l~~~~---------~~~~~~L~~L~L~~n-~l~~~----~~l~~l~~L~~L~Ls~N-~l~~~~~  271 (597)
T 3oja_B          208 AIPIAVEELDASHNS-INVVR---------GPVNVELTILKLQHN-NLTDT----AWLLNYPGLVEVDLSYN-ELEKIMY  271 (597)
T ss_dssp             ECCTTCSEEECCSSC-CCEEE---------CSCCSCCCEEECCSS-CCCCC----GGGGGCTTCSEEECCSS-CCCEEES
T ss_pred             cCCchhheeeccCCc-ccccc---------cccCCCCCEEECCCC-CCCCC----hhhccCCCCCEEECCCC-ccCCCCH
Confidence            124567777776653 33332         223467777777774 33322    33567888888888885 5665544


Q ss_pred             hhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecC
Q 048809          561 LVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILEC  640 (878)
Q Consensus       561 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C  640 (878)
                      . .+.++++|+.|++++|. +..++....            .+++|+.|++++| .++.++.  ....+++|+.|++++|
T Consensus       272 ~-~~~~l~~L~~L~Ls~N~-l~~l~~~~~------------~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N  334 (597)
T 3oja_B          272 H-PFVKMQRLERLYISNNR-LVALNLYGQ------------PIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHN  334 (597)
T ss_dssp             G-GGTTCSSCCEEECTTSC-CCEEECSSS------------CCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSS
T ss_pred             H-HhcCccCCCEEECCCCC-CCCCCcccc------------cCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCC
Confidence            2 45778889999988864 444544333            2889999999886 4556664  2467889999999986


Q ss_pred             CCccccccccccccccccceeEEEEecccc
Q 048809          641 PQVKFKSTIHESTKKRFHTIKVLCIEGYDY  670 (878)
Q Consensus       641 ~~l~lp~~~~~~~~~~l~~L~~L~l~~c~~  670 (878)
                      .-..+|..   .    +++|+.|++++|+.
T Consensus       335 ~l~~~~~~---~----~~~L~~L~l~~N~~  357 (597)
T 3oja_B          335 SIVTLKLS---T----HHTLKNLTLSHNDW  357 (597)
T ss_dssp             CCCCCCCC---T----TCCCSEEECCSSCE
T ss_pred             CCCCcChh---h----cCCCCEEEeeCCCC
Confidence            53336532   2    88999999999885

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=2.1e-21  Score=214.35  Aligned_cols=280  Identities=15%  Similarity=0.157  Sum_probs=180.2

Q ss_pred             ccCCCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEE
Q 048809          225 VLKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTL  301 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L  301 (878)
                      ...+++++++.++.++.+|...  .+++|++|++++|.+..++...|..+++|++|++++|.+..+| ..++.+++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            3578999999999999999865  7999999999999999998877899999999999999998875 558999999999


Q ss_pred             EccCCCCCCc-c-cccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccc
Q 048809          302 SLDYCELGDM-A-IIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRN  378 (878)
Q Consensus       302 ~L~~~~l~~l-~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  378 (878)
                      ++++|.++.+ . .++++++|++|++++|.++.++.. +++++           +|+.|++.+|.+.            .
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----------~L~~L~l~~n~l~------------~  179 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-----------SLQNLQLSSNRLT------------H  179 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT-----------TCCEEECCSSCCS------------B
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCC-----------CCCEEECCCCcCC------------c
Confidence            9999999876 3 369999999999999998887653 66554           5566677777665            1


Q ss_pred             cCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhcc
Q 048809          379 ASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLK  458 (878)
Q Consensus       379 ~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~  458 (878)
                         ..+..+++|+.|+++++....++    ...+|+.|++..+......                       .   ..++
T Consensus       180 ---~~~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~~-----------------------~---~~~~  226 (390)
T 3o6n_A          180 ---VDLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVR-----------------------G---PVNV  226 (390)
T ss_dssp             ---CCGGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEEE-----------------------C---CCCS
T ss_pred             ---cccccccccceeecccccccccC----CCCcceEEECCCCeeeecc-----------------------c---cccc
Confidence               13556778888888887655432    3345555555322110000                       0   0124


Q ss_pred             ccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCc
Q 048809          459 GIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAA  538 (878)
Q Consensus       459 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~  538 (878)
                      +|+.|++.++.... . +.+  ..+++|++|+++++. +..+...      ....+++|+.|+++++ .++.++.   ..
T Consensus       227 ~L~~L~l~~n~l~~-~-~~l--~~l~~L~~L~Ls~n~-l~~~~~~------~~~~l~~L~~L~L~~n-~l~~~~~---~~  291 (390)
T 3o6n_A          227 ELTILKLQHNNLTD-T-AWL--LNYPGLVEVDLSYNE-LEKIMYH------PFVKMQRLERLYISNN-RLVALNL---YG  291 (390)
T ss_dssp             SCCEEECCSSCCCC-C-GGG--GGCTTCSEEECCSSC-CCEEESG------GGTTCSSCCEEECCSS-CCCEEEC---SS
T ss_pred             cccEEECCCCCCcc-c-HHH--cCCCCccEEECCCCc-CCCcChh------HccccccCCEEECCCC-cCcccCc---cc
Confidence            55555555543321 1 112  235566666665543 2222111      3344555555555552 3333311   12


Q ss_pred             cccCCccEEEeecCCCcccccchhhhhhccCccEEEEecC
Q 048809          539 ESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGC  578 (878)
Q Consensus       539 ~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c  578 (878)
                      ..+++|+.|++.+| ++..+++  .+..+++|++|++++|
T Consensus       292 ~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N  328 (390)
T 3o6n_A          292 QPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHN  328 (390)
T ss_dssp             SCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSS
T ss_pred             CCCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCC
Confidence            34555555555554 3444433  2344555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=9e-21  Score=221.00  Aligned_cols=280  Identities=15%  Similarity=0.140  Sum_probs=186.3

Q ss_pred             cCCCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cccCCCCCcEEE
Q 048809          226 LKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SLGLLQNLQTLS  302 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~  302 (878)
                      ..+++.+++.++.+..+|...  .+++|++|++++|.+..++...|..+++|++|+|++|.+..+|. .|+.+++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            567899999999999998865  78999999999999999988778999999999999999988865 569999999999


Q ss_pred             ccCCCCCCc-c-cccCcccCcEEEeeCCCcccchH-hhcccccCcccccccccCCcEEEccCCCCCcccccccccccccc
Q 048809          303 LDYCELGDM-A-IIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNA  379 (878)
Q Consensus       303 L~~~~l~~l-~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  379 (878)
                      |++|.++.+ + .++++++|++|++++|.++.++. .+++++           +|+.|++.+|.+.            . 
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------~L~~L~L~~N~l~------------~-  185 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-----------SLQNLQLSSNRLT------------H-  185 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-----------TCCEEECTTSCCS------------B-
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC-----------cCcEEECcCCCCC------------C-
Confidence            999998876 3 46999999999999999888765 466655           4556677777655            1 


Q ss_pred             CcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccc
Q 048809          380 SLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKG  459 (878)
Q Consensus       380 ~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~  459 (878)
                        ..++.+++|+.|++++|....++    ...+|+.|+++.+.......                          ...++
T Consensus       186 --~~~~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~~~--------------------------~~~~~  233 (597)
T 3oja_B          186 --VDLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRG--------------------------PVNVE  233 (597)
T ss_dssp             --CCGGGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEEEC--------------------------SCCSC
T ss_pred             --cChhhhhhhhhhhcccCcccccc----CCchhheeeccCCccccccc--------------------------ccCCC
Confidence              12455677888888877654432    33455555553222110000                          01245


Q ss_pred             cceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCcc
Q 048809          460 IKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAE  539 (878)
Q Consensus       460 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~  539 (878)
                      |+.|+++++....  .+.+  ..+++|++|+++++. +..+...      ....+++|+.|+++++ .++.++.   ...
T Consensus       234 L~~L~L~~n~l~~--~~~l--~~l~~L~~L~Ls~N~-l~~~~~~------~~~~l~~L~~L~Ls~N-~l~~l~~---~~~  298 (597)
T 3oja_B          234 LTILKLQHNNLTD--TAWL--LNYPGLVEVDLSYNE-LEKIMYH------PFVKMQRLERLYISNN-RLVALNL---YGQ  298 (597)
T ss_dssp             CCEEECCSSCCCC--CGGG--GGCTTCSEEECCSSC-CCEEESG------GGTTCSSCCEEECTTS-CCCEEEC---SSS
T ss_pred             CCEEECCCCCCCC--Chhh--ccCCCCCEEECCCCc-cCCCCHH------HhcCccCCCEEECCCC-CCCCCCc---ccc
Confidence            6666666554322  1222  346677777776653 3332111      3445666666666663 3444421   234


Q ss_pred             ccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCC
Q 048809          540 SFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQ  579 (878)
Q Consensus       540 ~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~  579 (878)
                      .+++|+.|++.+| .+..+|.  .+..+++|+.|++++|.
T Consensus       299 ~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          299 PIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             CCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC
T ss_pred             cCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC
Confidence            4666666666664 4444443  23556666666666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=1.3e-20  Score=214.05  Aligned_cols=180  Identities=18%  Similarity=0.285  Sum_probs=141.7

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-c
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-L  292 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i  292 (878)
                      .+...|. .++.++++|++++|.++.++. .+ .+++|++|++++|.+..++...|.++++|++|+|++|.+..+|.. +
T Consensus        22 ~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  100 (477)
T 2id5_A           22 RFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF  100 (477)
T ss_dssp             CCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSS
T ss_pred             CcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccc
Confidence            3344443 467789999999999998864 33 899999999999999888777789999999999999999999865 7


Q ss_pred             cCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccchH-hhcccccCcccccccccCCcEEEccCCCCCcccc
Q 048809          293 GLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKV  369 (878)
Q Consensus       293 ~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~  369 (878)
                      .++++|++|+|++|.++.+  ..+.++++|++|++++|.+..++. .++++           ++|+.|++.+|.+.    
T Consensus       101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----------~~L~~L~l~~n~l~----  165 (477)
T 2id5_A          101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL-----------NSLEQLTLEKCNLT----  165 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTC-----------TTCCEEEEESCCCS----
T ss_pred             cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCC-----------CCCCEEECCCCcCc----
Confidence            9999999999999998864  679999999999999998887653 45544           45677788888765    


Q ss_pred             ccccccccccCcccccCCCCCCEEEeecCCCCCCCc-chhcccCCceEEEE
Q 048809          370 EGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRIL  419 (878)
Q Consensus       370 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~  419 (878)
                              ......+..+++|+.|+++++....++. .+..+++|+.|++.
T Consensus       166 --------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  208 (477)
T 2id5_A          166 --------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS  208 (477)
T ss_dssp             --------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred             --------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence                    2234568889999999999998766543 23344445555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.86  E-value=2.2e-22  Score=235.56  Aligned_cols=62  Identities=13%  Similarity=0.118  Sum_probs=28.7

Q ss_pred             cCCccEEEEccCCCcc-cccCcccccCCCcEEEecccCCceEeechhhhhhhccceEEEEcccc
Q 048809          707 ANNLEVLEIYGCDNLI-NLVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCK  769 (878)
Q Consensus       707 l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~  769 (878)
                      +++|++|++++|..-. .++.....+++|+.|++++|+ +++.....++..+++|+.|++++|+
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            4555555555554211 112222344555555555554 4332223344455555555555554

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.85  E-value=3e-21  Score=246.55  Aligned_cols=182  Identities=21%  Similarity=0.308  Sum_probs=152.4

Q ss_pred             CCCcEEEEEeCChHHhhccCCCCccEEcCC-CChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHh
Q 048809            1 MGGCKVLLTARSHDVLSSKMDCQKNIFVDV-LNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALK   79 (878)
Q Consensus         1 ~~gs~iivTtR~~~v~~~~~~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~   79 (878)
                      ++|||||||||++.|+...++....+.+++ |+++|||+||+.+++.  ..+.+.+++++|+++|+|+||||+++|++|+
T Consensus       255 ~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~l~  332 (1249)
T 3sfz_A          255 DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLR  332 (1249)
T ss_dssp             CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS--CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCC--ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence            479999999999999965467778899996 9999999999999953  2345667899999999999999999999999


Q ss_pred             cCCChHHHHHHHHHHHccCc----------chhhhhhhhhcccccCCCCCChHHHHHHHhhhcccC-CccH--HHHHHHH
Q 048809           80 NKSSLYVWKDALRQLKNKSL----------LGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSY-IRNV--KDLLYHG  146 (878)
Q Consensus        80 ~~~~~~~w~~~l~~l~~~~~----------~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp-~~~~--~~li~~w  146 (878)
                      .+.  ..|++.++.+.....          ...+..++.+||+.||+      ++|+||+|||+|| ++.|  +.++.+|
T Consensus       333 ~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~------~~~~~~~~l~~f~~~~~i~~~~~~~~~  404 (1249)
T 3sfz_A          333 DFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE------DIKDYYTDLSILQKDVKVPTKVLCVLW  404 (1249)
T ss_dssp             HSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT------TTHHHHHHGGGSCTTCCEEHHHHHHHH
T ss_pred             cCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCH------HHHHHHHHhCccCCCCeeCHHHHHHHh
Confidence            874  469999998865431          12689999999999999      9999999999999 8888  8899999


Q ss_pred             hhccCccCCCcHHHHHHHHHHHHHHHHhccccccccCC--cceehhHHHHHHHHHHHccc
Q 048809          147 MGLGLFQNINTVDEARDRAHTLVDKLKNSCLLLGGWRS--EWFSMHDVVRDVAISIASRD  204 (878)
Q Consensus       147 ~~~g~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~--~~~~mhdli~~~~~~~~~~e  204 (878)
                      .+++        +++    .+++++|+++||++.....  ..|+|||++|++++..+.++
T Consensus       405 ~~~~--------~~~----~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          405 DLET--------EEV----EDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             TCCH--------HHH----HHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             CCCH--------HHH----HHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            7652        333    3589999999999865332  35999999999999987655

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.84  E-value=1.2e-21  Score=226.41  Aligned_cols=163  Identities=18%  Similarity=0.185  Sum_probs=133.8

Q ss_pred             CCcEEEEEeCChHHhhccCCCCccEEcC------CCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHH
Q 048809            2 GGCKVLLTARSHDVLSSKMDCQKNIFVD------VLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVA   75 (878)
Q Consensus         2 ~gs~iivTtR~~~v~~~~~~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g   75 (878)
                      +|||||||||++.|+.. +.....|+++      +|+++|||+||+++.+..     ..+++.+|   |+|+||||+++|
T Consensus       264 pGSRILVTTRd~~Va~~-l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaG  334 (1221)
T 1vt4_I          264 LSCKILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIA  334 (1221)
T ss_dssp             SSCCEEEECSCSHHHHH-HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHH
T ss_pred             CCeEEEEeccChHHHHh-cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHH
Confidence            69999999999999974 4444467777      999999999999997532     23344444   999999999999


Q ss_pred             HHHhcCC-ChHHHHHHHHHHHccCcchhhhhhhhhcccccCCCCCChHHH-HHHHhhhcccC-CccH--HHHHHHHhhcc
Q 048809           76 KALKNKS-SLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEEL-RKTFLLIGYSY-IRNV--KDLLYHGMGLG  150 (878)
Q Consensus        76 ~~l~~~~-~~~~w~~~l~~l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~-k~cf~~~~~fp-~~~~--~~li~~w~~~g  150 (878)
                      ++|+.+. +.++|+.+        ....+..+|++||+.||+      +. |+||+|||+|| ++.|  +.++.+|+++|
T Consensus       335 s~Lr~k~~s~eeW~~~--------~~~~I~aaLelSYd~Lp~------eelK~cFL~LAIFPed~~I~~elLa~LW~aeG  400 (1221)
T 1vt4_I          335 ESIRDGLATWDNWKHV--------NCDKLTTIIESSLNVLEP------AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI  400 (1221)
T ss_dssp             HHHHHSCSSHHHHHHC--------SCHHHHHHHHHHHHHSCT------THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC
T ss_pred             HHHhCCCCCHHHHhcC--------ChhHHHHHHHHHHHhCCH------HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC
Confidence            9999884 66788753        235899999999999999      88 99999999999 8888  67899999987


Q ss_pred             CccCCCcHHHHHHHHHHHHHHHHhccccccccCCcceehhHHHHHHHH
Q 048809          151 LFQNINTVDEARDRAHTLVDKLKNSCLLLGGWRSEWFSMHDVVRDVAI  198 (878)
Q Consensus       151 ~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~mhdli~~~~~  198 (878)
                      .       +++.    +++++|+++||++..+....|+|||++++++.
T Consensus       401 e-------edAe----~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          401 K-------SDVM----VVVNKLHKYSLVEKQPKESTISIPSIYLELKV  437 (1221)
T ss_dssp             S-------HHHH----HHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred             H-------HHHH----HHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence            1       2333    48999999999998656678999999998653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.84  E-value=9.4e-22  Score=230.26  Aligned_cols=111  Identities=10%  Similarity=0.086  Sum_probs=57.1

Q ss_pred             ccCCccEEEEccCCC-ccc-ccCcc-cccCCCcEEEecccCCceEeechhhhhhhccceEEEEccccccccccccccccc
Q 048809          706 HANNLEVLEIYGCDN-LIN-LVPSS-TSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEG  782 (878)
Q Consensus       706 ~l~~L~~L~l~~c~~-l~~-l~~~~-~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~  782 (878)
                      .+++|++|+++.|.. ++. .+..+ ..+++|+.|++++| ++++.....++.++++|++|+|++|+ +++....     
T Consensus       434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-----  506 (592)
T 3ogk_B          434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIA-----  506 (592)
T ss_dssp             HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHH-----
T ss_pred             hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHH-----
Confidence            356677777766553 211 11111 23667777777764 35443334455666777777777776 4322110     


Q ss_pred             cccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcC
Q 048809          783 DNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVED  830 (878)
Q Consensus       783 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~  830 (878)
                           .....+++|+.|+|++|+ ++..... .....+|.+....+..
T Consensus       507 -----~~~~~l~~L~~L~ls~n~-it~~~~~-~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          507 -----AAVTKLPSLRYLWVQGYR-ASMTGQD-LMQMARPYWNIELIPS  547 (592)
T ss_dssp             -----HHHHHCSSCCEEEEESCB-CCTTCTT-GGGGCCTTEEEEEECC
T ss_pred             -----HHHHhcCccCeeECcCCc-CCHHHHH-HHHHhCCCcEEEEecC
Confidence                 011236777777777776 5543222 1223456655544443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=8.1e-19  Score=188.75  Aligned_cols=155  Identities=16%  Similarity=0.319  Sum_probs=122.8

Q ss_pred             CCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCC
Q 048809          228 DCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYC  306 (878)
Q Consensus       228 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~  306 (878)
                      +++.++++++.++.+|..+ .+++++|++++|.+..++...|.++++|++|++++|.+..+ |..++.+++|++|++++|
T Consensus        32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            5788999999998888765 37899999999999999887789999999999999999877 788999999999999999


Q ss_pred             CCCCc-ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809          307 ELGDM-AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL  384 (878)
Q Consensus       307 ~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  384 (878)
                      .++.+ ..+.  ++|++|++++|.++.++.. +++++           +|+.|++.+|.+..          .......+
T Consensus       111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~-----------~L~~L~l~~n~l~~----------~~~~~~~~  167 (330)
T 1xku_A          111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLN-----------QMIVVELGTNPLKS----------SGIENGAF  167 (330)
T ss_dssp             CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT-----------TCCEEECCSSCCCG----------GGBCTTGG
T ss_pred             cCCccChhhc--ccccEEECCCCcccccCHhHhcCCc-----------cccEEECCCCcCCc----------cCcChhhc
Confidence            98866 4443  7899999999988887654 55444           55666887776541          11234567


Q ss_pred             cCCCCCCEEEeecCCCCCCCcc
Q 048809          385 NNLSKLTSLEILIQDEKTLPRD  406 (878)
Q Consensus       385 ~~l~~L~~L~l~~~~~~~~~~~  406 (878)
                      ..+++|+.|+++++....+|..
T Consensus       168 ~~l~~L~~L~l~~n~l~~l~~~  189 (330)
T 1xku_A          168 QGMKKLSYIRIADTNITTIPQG  189 (330)
T ss_dssp             GGCTTCCEEECCSSCCCSCCSS
T ss_pred             cCCCCcCEEECCCCccccCCcc
Confidence            7788888888888877766654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=1.5e-19  Score=194.69  Aligned_cols=154  Identities=17%  Similarity=0.320  Sum_probs=109.5

Q ss_pred             CCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCC
Q 048809          228 DCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYC  306 (878)
Q Consensus       228 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~  306 (878)
                      +++.++++++.++.+|..+ .++|++|++++|.+..++...|.++++|++|++++|.+..+ |..++.+++|++|++++|
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            4678888888888887765 36888888888888888766678888888888888888766 677888888888888888


Q ss_pred             CCCCc-ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809          307 ELGDM-AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL  384 (878)
Q Consensus       307 ~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  384 (878)
                      .++.+ ..+.  ++|++|++++|.++.+|.. +++++           +|+.|++.+|.+...          ...+..+
T Consensus       113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~-----------~L~~L~l~~n~l~~~----------~~~~~~~  169 (332)
T 2ft3_A          113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLR-----------NMNCIEMGGNPLENS----------GFEPGAF  169 (332)
T ss_dssp             CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCS-----------SCCEEECCSCCCBGG----------GSCTTSS
T ss_pred             cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCc-----------cCCEEECCCCccccC----------CCCcccc
Confidence            87765 4444  7888888888888777654 44433           455567777655310          1223444


Q ss_pred             cCCCCCCEEEeecCCCCCCCcc
Q 048809          385 NNLSKLTSLEILIQDEKTLPRD  406 (878)
Q Consensus       385 ~~l~~L~~L~l~~~~~~~~~~~  406 (878)
                      ..+ +|+.|+++++....+|..
T Consensus       170 ~~l-~L~~L~l~~n~l~~l~~~  190 (332)
T 2ft3_A          170 DGL-KLNYLRISEAKLTGIPKD  190 (332)
T ss_dssp             CSC-CCSCCBCCSSBCSSCCSS
T ss_pred             cCC-ccCEEECcCCCCCccCcc
Confidence            555 677777777766655543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.82  E-value=7.4e-21  Score=222.78  Aligned_cols=215  Identities=14%  Similarity=0.133  Sum_probs=117.8

Q ss_pred             ccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeeccc------
Q 048809          540 SFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCS------  613 (878)
Q Consensus       540 ~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~------  613 (878)
                      .+++|+.|++.+|. +........+.++++|++|++++|-.-..+....            ..+++|++|++.+      
T Consensus       287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~------------~~~~~L~~L~L~~~~~~g~  353 (594)
T 2p1m_B          287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA------------STCKDLRELRVFPSEPFVM  353 (594)
T ss_dssp             HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH------------HHCTTCCEEEEECSCTTCS
T ss_pred             hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHH------------HhCCCCCEEEEecCccccc
Confidence            46778888888776 5543222334577888888888762111111111            1267788887743      


Q ss_pred             --CCCcceecCCCcccccCCcceEEEecCCCcc--ccccccccccccccceeEEEEe-----cccccccceeeecccccc
Q 048809          614 --LPQLTSFCTGDLHFEFPSLEKLKILECPQVK--FKSTIHESTKKRFHTIKVLCIE-----GYDYDGEELFETVENGVN  684 (878)
Q Consensus       614 --c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~--lp~~~~~~~~~~l~~L~~L~l~-----~c~~~~~~~~~~~~~~~~  684 (878)
                        |..++..........+++|++|.+ +|+.++  .+..+...    +++|+.|+++     +|..              
T Consensus       354 ~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~----~~~L~~L~L~~~~~~~~~~--------------  414 (594)
T 2p1m_B          354 EPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARN----RPNMTRFRLCIIEPKAPDY--------------  414 (594)
T ss_dssp             SCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHH----CTTCCEEEEEESSTTCCCT--------------
T ss_pred             ccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhh----CCCcceeEeecccCCCccc--------------
Confidence              333333211111234788888844 556666  33333334    7888888888     4544              


Q ss_pred             ceeeccCCCCchhhhccccccccCCccEEEEccCCCcccc-cCccc-ccCCCcEEEecccCCceEeechhhhhhhccceE
Q 048809          685 AMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINL-VPSST-SFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQ  762 (878)
Q Consensus       685 l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~-~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~  762 (878)
                           +...+.-..+ ...+..+++|+.|++++  .++.. +..+. .+++|+.|++++|. +++.....++.++++|++
T Consensus       415 -----l~~~~~~~~~-~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~  485 (594)
T 2p1m_B          415 -----LTLEPLDIGF-GAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRK  485 (594)
T ss_dssp             -----TTCCCTHHHH-HHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCE
T ss_pred             -----ccCCchhhHH-HHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCE
Confidence                 2221110011 01134467788888865  33221 12222 36778888887754 544433444466788888


Q ss_pred             EEEccccccccccccccccccccccccccccccchhhccccCcc
Q 048809          763 MKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLES  806 (878)
Q Consensus       763 L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  806 (878)
                      |++++|+. ++....          .....+++|+.|++++|+.
T Consensus       486 L~L~~n~~-~~~~~~----------~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          486 LEIRDCPF-GDKALL----------ANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             EEEESCSC-CHHHHH----------HTGGGGGGSSEEEEESSCC
T ss_pred             EECcCCCC-cHHHHH----------HHHHhCCCCCEEeeeCCCC
Confidence            88888764 322110          0122367888888888865

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=3.6e-19  Score=190.61  Aligned_cols=86  Identities=22%  Similarity=0.342  Sum_probs=43.8

Q ss_pred             CccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCc-ccccCcccCcEEEeeCC
Q 048809          250 QLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM-AIIGDLKKLVILALRGS  328 (878)
Q Consensus       250 ~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~  328 (878)
                      ++++|++++|.+..+|..+ .++++|++|+|++|.+..+|..++.+++|++|+|++|.++.+ ..++++++|++|++++|
T Consensus        82 ~l~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n  160 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC  160 (328)
T ss_dssp             TCCEEEEESSCCSSCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred             ceeEEEccCCCchhcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence            4444444444444444443 335555555555555555555555555555555555555443 44555555555555554


Q ss_pred             -CcccchHh
Q 048809          329 -DMKELVGE  336 (878)
Q Consensus       329 -~l~~lp~~  336 (878)
                       .+..+|..
T Consensus       161 ~~~~~~p~~  169 (328)
T 4fcg_A          161 PELTELPEP  169 (328)
T ss_dssp             TTCCCCCSC
T ss_pred             CCccccChh
Confidence             33344443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.81  E-value=3.7e-19  Score=190.55  Aligned_cols=108  Identities=24%  Similarity=0.405  Sum_probs=77.5

Q ss_pred             CCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809          227 KDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY  305 (878)
Q Consensus       227 ~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~  305 (878)
                      .+++.|+++++.++.+|..+ .+++|++|++++|.+..+|.. |+++++|++|+|++|.+..+|..++.+++|++|++++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence            56788888888888887766 678888888888877777765 4788888888888888888888888888888888888


Q ss_pred             CC-CCCc-cccc---------CcccCcEEEeeCCCcccchH
Q 048809          306 CE-LGDM-AIIG---------DLKKLVILALRGSDMKELVG  335 (878)
Q Consensus       306 ~~-l~~l-~~i~---------~L~~L~~L~l~~~~l~~lp~  335 (878)
                      |. +..+ ..++         ++++|++|++++|.++.+|.
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~  200 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA  200 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH
Confidence            76 3333 4333         35666666666555544443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.78  E-value=1e-17  Score=180.14  Aligned_cols=167  Identities=21%  Similarity=0.335  Sum_probs=127.4

Q ss_pred             cccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEE
Q 048809          224 DVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTL  301 (878)
Q Consensus       224 ~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L  301 (878)
                      ..++++++|++++|.++.++.. + .+++|++|++++|.+..++...|..+++|++|++++|.++.+|..+.  ++|++|
T Consensus        49 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L  126 (330)
T 1xku_A           49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQEL  126 (330)
T ss_dssp             SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEE
T ss_pred             cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEE
Confidence            3567899999999999998763 3 89999999999999998866667999999999999999999998876  799999


Q ss_pred             EccCCCCCCc--ccccCcccCcEEEeeCCCccc---chHhhcccccCcccccccccCCcEEEccCCCCCccccccccccc
Q 048809          302 SLDYCELGDM--AIIGDLKKLVILALRGSDMKE---LVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGER  376 (878)
Q Consensus       302 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~---lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~  376 (878)
                      ++++|.++.+  ..++++++|++|++++|.+..   .+..+++++           +|+.|++.+|.+..          
T Consensus       127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-----------~L~~L~l~~n~l~~----------  185 (330)
T 1xku_A          127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-----------KLSYIRIADTNITT----------  185 (330)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT-----------TCCEEECCSSCCCS----------
T ss_pred             ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC-----------CcCEEECCCCcccc----------
Confidence            9999998876  568999999999999997763   344555544           45566777665541          


Q ss_pred             cccCcccccCCCCCCEEEeecCCCCCC-CcchhcccCCceEEE
Q 048809          377 RNASLHELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRI  418 (878)
Q Consensus       377 ~~~~~~~L~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l  418 (878)
                         .+..+  .++|+.|++++|....+ |..+..+++|+.|++
T Consensus       186 ---l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  223 (330)
T 1xku_A          186 ---IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL  223 (330)
T ss_dssp             ---CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred             ---CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence               11111  15778888887776554 344444555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.77  E-value=8.4e-18  Score=180.89  Aligned_cols=166  Identities=22%  Similarity=0.369  Sum_probs=124.3

Q ss_pred             cccCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEE
Q 048809          224 DVLKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTL  301 (878)
Q Consensus       224 ~~~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L  301 (878)
                      .++++++.|++++|.++.+++ .+ .+++|++|++++|.+..++...|.++++|++|++++|.+..+|..+.  ++|++|
T Consensus        51 ~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L  128 (332)
T 2ft3_A           51 EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVEL  128 (332)
T ss_dssp             CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEE
T ss_pred             CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEE
Confidence            356789999999999998865 33 89999999999999999877778999999999999999999998877  899999


Q ss_pred             EccCCCCCCc--ccccCcccCcEEEeeCCCccc---chHhhcccccCcccccccccCCcEEEccCCCCCccccccccccc
Q 048809          302 SLDYCELGDM--AIIGDLKKLVILALRGSDMKE---LVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGER  376 (878)
Q Consensus       302 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~---lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~  376 (878)
                      ++++|.++.+  ..++++++|++|++++|.++.   .|..++.+ +           |+.|++.+|.+..          
T Consensus       129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~-----------L~~L~l~~n~l~~----------  186 (332)
T 2ft3_A          129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K-----------LNYLRISEAKLTG----------  186 (332)
T ss_dssp             ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C-----------CSCCBCCSSBCSS----------
T ss_pred             ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c-----------cCEEECcCCCCCc----------
Confidence            9999999876  458999999999999998763   34445444 4           4455666665441          


Q ss_pred             cccCcccccCCCCCCEEEeecCCCCCCC-cchhcccCCceEEE
Q 048809          377 RNASLHELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRI  418 (878)
Q Consensus       377 ~~~~~~~L~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l  418 (878)
                         .+..+.  ++|+.|++++|....++ ..+..+++|+.|++
T Consensus       187 ---l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L  224 (332)
T 2ft3_A          187 ---IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGL  224 (332)
T ss_dssp             ---CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred             ---cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence               111221  46777777777666554 33334444444433

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.77  E-value=2.1e-18  Score=201.13  Aligned_cols=177  Identities=21%  Similarity=0.313  Sum_probs=142.5

Q ss_pred             CCCcEEEEEeCChHHhhccCCCCccEEc---CCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHHH
Q 048809            1 MGGCKVLLTARSHDVLSSKMDCQKNIFV---DVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKA   77 (878)
Q Consensus         1 ~~gs~iivTtR~~~v~~~~~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~   77 (878)
                      ++|++||||||+..++.. ++ ...+++   ++|+.+||++||...++..  .....+.+.+|+++|+|+||||+.+|+.
T Consensus       255 ~~~~~ilvTsR~~~~~~~-~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~  330 (591)
T 1z6t_A          255 DSQCQILLTTRDKSVTDS-VM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGAL  330 (591)
T ss_dssp             CSSCEEEEEESCGGGGTT-CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCCeEEEECCCcHHHHh-cC-CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHH
Confidence            479999999999999884 43 234554   5899999999999999642  2344578899999999999999999999


Q ss_pred             HhcCCChHHHHHHHHHHHccCc----------chhhhhhhhhcccccCCCCCChHHHHHHHhhhcccC-CccH--HHHHH
Q 048809           78 LKNKSSLYVWKDALRQLKNKSL----------LGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSY-IRNV--KDLLY  144 (878)
Q Consensus        78 l~~~~~~~~w~~~l~~l~~~~~----------~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp-~~~~--~~li~  144 (878)
                      ++.+.  ..|+.+++.+.....          ...+..++.+||+.||+      +.|.||+++|+|| ++.|  +.++.
T Consensus       331 l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~------~~~~~l~~la~f~~~~~i~~~~l~~  402 (591)
T 1z6t_A          331 LRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE------DIKDYYTDLSILQKDVKVPTKVLCI  402 (591)
T ss_dssp             HHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT------TTHHHHHHGGGCCTTCCEEHHHHHH
T ss_pred             HhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH------HHHHHHHHccccCCCCccCHHHHHH
Confidence            99873  369999988875421          13788999999999999      9999999999999 8877  67778


Q ss_pred             HHhhccCccCCCcHHHHHHHHHHHHHHHHhcccccccc--CCcceehhHHHHHHHHHHH
Q 048809          145 HGMGLGLFQNINTVDEARDRAHTLVDKLKNSCLLLGGW--RSEWFSMHDVVRDVAISIA  201 (878)
Q Consensus       145 ~w~~~g~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~--~~~~~~mhdli~~~~~~~~  201 (878)
                      .|.+.        .+++    .+++++|++++|++...  ....|+||+++|+++....
T Consensus       403 l~~~~--------~~~~----~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          403 LWDME--------TEEV----EDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             HHTCC--------HHHH----HHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred             HhccC--------HHHH----HHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence            88643        2333    34899999999998542  3347999999999998773

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.76  E-value=4.1e-17  Score=188.08  Aligned_cols=260  Identities=18%  Similarity=0.117  Sum_probs=157.1

Q ss_pred             CCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCC
Q 048809          228 DCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCE  307 (878)
Q Consensus       228 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~  307 (878)
                      +++.|+++++.++.+|..+. ++|++|++++|.+..+|.    .+++|++|+|++|.++.+|.   .+++|++|++++|.
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP  112 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred             CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence            35677777777777766554 677777777777777765    45677777777777777766   56777777777777


Q ss_pred             CCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCC
Q 048809          308 LGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNL  387 (878)
Q Consensus       308 l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l  387 (878)
                      ++.++.  .+.+|++|++++|.++.+|..              +++|+.|++++|.+..             .+.   .+
T Consensus       113 l~~l~~--~l~~L~~L~L~~N~l~~lp~~--------------l~~L~~L~Ls~N~l~~-------------l~~---~~  160 (622)
T 3g06_A          113 LTHLPA--LPSGLCKLWIFGNQLTSLPVL--------------PPGLQELSVSDNQLAS-------------LPA---LP  160 (622)
T ss_dssp             CCCCCC--CCTTCCEEECCSSCCSCCCCC--------------CTTCCEEECCSSCCSC-------------CCC---CC
T ss_pred             CCCCCC--CCCCcCEEECCCCCCCcCCCC--------------CCCCCEEECcCCcCCC-------------cCC---cc
Confidence            766643  566777777777776666642              2345556666665440             011   23


Q ss_pred             CCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecC
Q 048809          388 SKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGG  467 (878)
Q Consensus       388 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~  467 (878)
                      .+|+.|++++|....+|.   .+++|+.|+++.+....                           ++..+++|+.|.+.+
T Consensus       161 ~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~l~~---------------------------l~~~~~~L~~L~L~~  210 (622)
T 3g06_A          161 SELCKLWAYNNQLTSLPM---LPSGLQELSVSDNQLAS---------------------------LPTLPSELYKLWAYN  210 (622)
T ss_dssp             TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC---------------------------CCCCCTTCCEEECCS
T ss_pred             CCCCEEECCCCCCCCCcc---cCCCCcEEECCCCCCCC---------------------------CCCccchhhEEECcC
Confidence            456666666666666662   44556665553221110                           001235666777665


Q ss_pred             cCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEE
Q 048809          468 SLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDI  547 (878)
Q Consensus       468 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L  547 (878)
                      +... . ++    ..+++|++|+++++ .++.+         . ..+++|+.|+++++ .++.++.      .+++|+.|
T Consensus       211 N~l~-~-l~----~~~~~L~~L~Ls~N-~L~~l---------p-~~l~~L~~L~Ls~N-~L~~lp~------~~~~L~~L  266 (622)
T 3g06_A          211 NRLT-S-LP----ALPSGLKELIVSGN-RLTSL---------P-VLPSELKELMVSGN-RLTSLPM------LPSGLLSL  266 (622)
T ss_dssp             SCCS-S-CC----CCCTTCCEEECCSS-CCSCC---------C-CCCTTCCEEECCSS-CCSCCCC------CCTTCCEE
T ss_pred             Cccc-c-cC----CCCCCCCEEEccCC-ccCcC---------C-CCCCcCcEEECCCC-CCCcCCc------ccccCcEE
Confidence            5322 1 11    22577888888765 33332         1 34577788888774 4554422      46778888


Q ss_pred             EeecCCCcccccchhhhhhccCccEEEEecCCcchhh
Q 048809          548 RVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVI  584 (878)
Q Consensus       548 ~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~  584 (878)
                      ++.+| +++.+|.  .+.++++|+.|++++++.....
T Consensus       267 ~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~l~~~~  300 (622)
T 3g06_A          267 SVYRN-QLTRLPE--SLIHLSSETTVNLEGNPLSERT  300 (622)
T ss_dssp             ECCSS-CCCSCCG--GGGGSCTTCEEECCSCCCCHHH
T ss_pred             eCCCC-CCCcCCH--HHhhccccCEEEecCCCCCCcC
Confidence            88775 6666654  4567788888888877644433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.76  E-value=2.6e-18  Score=182.76  Aligned_cols=169  Identities=19%  Similarity=0.316  Sum_probs=132.4

Q ss_pred             CCCcEEEeeCCCCC---CCCCCC-CCCCccEEEeec-CCCC-CCCchhhcCCCCCcEEEeeCCCCC-CCCccccCCCCCc
Q 048809          227 KDCTAISLNNSNIN---ELPQGF-ECPQLKYFRIHN-DHSL-KIPDNFFTGMTELRVLDFTRMHLL-ALPSSLGLLQNLQ  299 (878)
Q Consensus       227 ~~lr~l~l~~~~~~---~l~~~~-~~~~Lr~L~l~~-~~~~-~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~  299 (878)
                      .++++|+++++.+.   .+|..+ .+++|++|++++ |.+. .+|.. |.++++|++|++++|.+. .+|..++.+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            57899999999988   477766 899999999995 6544 66766 599999999999999997 7899999999999


Q ss_pred             EEEccCCCCC-Cc-ccccCcccCcEEEeeCCCcc-cchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccc
Q 048809          300 TLSLDYCELG-DM-AIIGDLKKLVILALRGSDMK-ELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGER  376 (878)
Q Consensus       300 ~L~L~~~~l~-~l-~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~  376 (878)
                      +|++++|.++ .+ ..++++++|++|++++|.++ .+|..++++.          .+|+.|++.+|.+.           
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~----------~~L~~L~L~~N~l~-----------  187 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS----------KLFTSMTISRNRLT-----------  187 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC----------TTCCEEECCSSEEE-----------
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh----------hcCcEEECcCCeee-----------
Confidence            9999999987 44 78999999999999999988 7888888665          14566677777654           


Q ss_pred             cccCcccccCCCCCCEEEeecCCCC-CCCcchhcccCCceEEEE
Q 048809          377 RNASLHELNNLSKLTSLEILIQDEK-TLPRDLSFFKMLQRYRIL  419 (878)
Q Consensus       377 ~~~~~~~L~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~  419 (878)
                       +..+..+..++ |+.|++++|... ..|..+..+++|+.|++.
T Consensus       188 -~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  229 (313)
T 1ogq_A          188 -GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             -EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             -ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence             23455666665 888888888754 334444455555555553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.76  E-value=1.1e-19  Score=212.85  Aligned_cols=233  Identities=14%  Similarity=0.118  Sum_probs=128.0

Q ss_pred             CCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeec--------CCC
Q 048809          483 FPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEW--------CDK  554 (878)
Q Consensus       483 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~--------c~~  554 (878)
                      +++|++|++.+|. +...    .... ....+++|+.|++.+|..-..+   ......+++|+.|++.+        |..
T Consensus       288 ~~~L~~L~L~~~~-l~~~----~l~~-~~~~~~~L~~L~l~~~~~~~~l---~~l~~~~~~L~~L~L~~~~~~g~~~~~~  358 (594)
T 2p1m_B          288 CSRLTTLNLSYAT-VQSY----DLVK-LLCQCPKLQRLWVLDYIEDAGL---EVLASTCKDLRELRVFPSEPFVMEPNVA  358 (594)
T ss_dssp             HTTCCEEECTTCC-CCHH----HHHH-HHTTCTTCCEEEEEGGGHHHHH---HHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred             hCCCCEEEccCCC-CCHH----HHHH-HHhcCCCcCEEeCcCccCHHHH---HHHHHhCCCCCEEEEecCcccccccCCC
Confidence            5677777776665 2210    0000 2345677777777765211111   00112467777777743        445


Q ss_pred             cccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecc-----cCCCcceecCC----Cc
Q 048809          555 LKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELC-----SLPQLTSFCTG----DL  625 (878)
Q Consensus       555 L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~-----~c~~l~~~~~~----~~  625 (878)
                      ++.........++++|+.|.+. |..+.........          ..+++|+.|++.     +|..++..+..    ..
T Consensus       359 l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~----------~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l  427 (594)
T 2p1m_B          359 LTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIA----------RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI  427 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHH----------HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH
T ss_pred             CCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHH----------hhCCCcceeEeecccCCCcccccCCchhhHHHHH
Confidence            5443332233457888888554 4444433221110          137788888887     56666643321    11


Q ss_pred             ccccCCcceEEEecCCCcc--ccccccccccccccceeEEEEecccccccceeeeccccccceeeccCCCCchhhhcccc
Q 048809          626 HFEFPSLEKLKILECPQVK--FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVENGVNAMIKGINFHPDLKQILKQE  703 (878)
Q Consensus       626 ~~~~~~L~~L~l~~C~~l~--lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~l~~l~l~~~~~l~~i~~~~  703 (878)
                      ...+++|++|++++  .++  .+..+...    +++|+.|++++|.. ++..+                    ..    .
T Consensus       428 ~~~~~~L~~L~L~~--~l~~~~~~~l~~~----~~~L~~L~L~~~~i-~~~~~--------------------~~----l  476 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG--LLTDKVFEYIGTY----AKKMEMLSVAFAGD-SDLGM--------------------HH----V  476 (594)
T ss_dssp             HHHCTTCCEEECCS--SCCHHHHHHHHHH----CTTCCEEEEESCCS-SHHHH--------------------HH----H
T ss_pred             HhhCCCccEEeecC--cccHHHHHHHHHh----chhccEeeccCCCC-cHHHH--------------------HH----H
Confidence            34678888888865  555  33333334    78899999988864 11111                    00    1


Q ss_pred             ccccCCccEEEEccCCCcccccC-cccccCCCcEEEecccCCceEeechhhhhhhccceEEEEcc
Q 048809          704 SSHANNLEVLEIYGCDNLINLVP-SSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFH  767 (878)
Q Consensus       704 ~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~  767 (878)
                      ...+++|++|++++|+.....+. ....+++|+.|++++|+. +.-....+...+++|+...+..
T Consensus       477 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~~  540 (594)
T 2p1m_B          477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVIDE  540 (594)
T ss_dssp             HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEECS
T ss_pred             HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEecC
Confidence            13368899999999886322222 334578999999999865 3222233445667776655543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.75  E-value=1.6e-17  Score=180.32  Aligned_cols=113  Identities=11%  Similarity=0.144  Sum_probs=61.2

Q ss_pred             ccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCC---
Q 048809          540 SFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQ---  616 (878)
Q Consensus       540 ~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~---  616 (878)
                      .+++|+.|++.++ ++..++. .....+++|++|+++++. +...+.....        .....+.++.++++++.-   
T Consensus       196 ~l~~L~~L~l~~n-~l~~~~~-~~~~~~~~L~~L~L~~n~-l~~~~~~~l~--------~~~~~~~l~~l~L~~~~l~~~  264 (353)
T 2z80_A          196 SIQNVSHLILHMK-QHILLLE-IFVDVTSSVECLELRDTD-LDTFHFSELS--------TGETNSLIKKFTFRNVKITDE  264 (353)
T ss_dssp             TCSEEEEEEEECS-CSTTHHH-HHHHHTTTEEEEEEESCB-CTTCCCC--------------CCCCCCEEEEESCBCCHH
T ss_pred             ccccCCeecCCCC-ccccchh-hhhhhcccccEEECCCCc-cccccccccc--------cccccchhhccccccccccCc
Confidence            3445555555553 2333332 123445666666666643 2222111100        011244455555555321   


Q ss_pred             -cceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccc
Q 048809          617 -LTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDY  670 (878)
Q Consensus       617 -l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~  670 (878)
                       +..++.  ....+++|++|++++| .++ +|..++..    +++|+.|++++|+.
T Consensus       265 ~l~~l~~--~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~----l~~L~~L~L~~N~~  313 (353)
T 2z80_A          265 SLFQVMK--LLNQISGLLELEFSRN-QLKSVPDGIFDR----LTSLQKIWLHTNPW  313 (353)
T ss_dssp             HHHHHHH--HHHTCTTCCEEECCSS-CCCCCCTTTTTT----CTTCCEEECCSSCB
T ss_pred             chhhhHH--HHhcccCCCEEECCCC-CCCccCHHHHhc----CCCCCEEEeeCCCc
Confidence             112222  2346789999999985 566 88877666    89999999999987

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.74  E-value=1.1e-19  Score=205.72  Aligned_cols=82  Identities=20%  Similarity=0.300  Sum_probs=41.9

Q ss_pred             CccEEEeecCCCCCCC-chhhcCCCCCcEEEeeCCCCC-----CCCccccCCCCCcEEEccCCCCCC--cccc-cCcc--
Q 048809          250 QLKYFRIHNDHSLKIP-DNFFTGMTELRVLDFTRMHLL-----ALPSSLGLLQNLQTLSLDYCELGD--MAII-GDLK--  318 (878)
Q Consensus       250 ~Lr~L~l~~~~~~~l~-~~~~~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~--l~~i-~~L~--  318 (878)
                      +|++|+++++.+...+ ..+|..+++|++|++++|.+.     .+|..+..+++|++|++++|.+..  +..+ ..+.  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            4555555555443332 222455566666666666554     344555555666666666665543  1222 2233  


Q ss_pred             --cCcEEEeeCCCcc
Q 048809          319 --KLVILALRGSDMK  331 (878)
Q Consensus       319 --~L~~L~l~~~~l~  331 (878)
                        +|++|++++|.++
T Consensus        84 ~~~L~~L~L~~n~i~   98 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLT   98 (461)
T ss_dssp             TCCCCEEECTTSCCB
T ss_pred             CCceeEEEccCCCCC
Confidence              4666666666554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.73  E-value=9.2e-18  Score=178.57  Aligned_cols=129  Identities=18%  Similarity=0.258  Sum_probs=102.4

Q ss_pred             CCccEEEeecCCCC---CCCchhhcCCCCCcEEEeeC-CCCC-CCCccccCCCCCcEEEccCCCCC-Cc-ccccCcccCc
Q 048809          249 PQLKYFRIHNDHSL---KIPDNFFTGMTELRVLDFTR-MHLL-ALPSSLGLLQNLQTLSLDYCELG-DM-AIIGDLKKLV  321 (878)
Q Consensus       249 ~~Lr~L~l~~~~~~---~l~~~~~~~l~~Lr~L~Ls~-~~i~-~lp~~i~~L~~L~~L~L~~~~l~-~l-~~i~~L~~L~  321 (878)
                      .++++|+++++.+.   .+|.. |.++++|++|++++ |.+. .+|..|+++++|++|++++|.++ .+ ..++++++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            58999999999776   47765 59999999999995 8775 78999999999999999999987 34 7799999999


Q ss_pred             EEEeeCCCcc-cchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCC-CCCEEEeecCC
Q 048809          322 ILALRGSDMK-ELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLS-KLTSLEILIQD  399 (878)
Q Consensus       322 ~L~l~~~~l~-~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~-~L~~L~l~~~~  399 (878)
                      +|++++|.++ .+|..+++++           +|+.|++.+|.+.            +..+..+..+. +|+.|++++|.
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~-----------~L~~L~L~~N~l~------------~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLP-----------NLVGITFDGNRIS------------GAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCT-----------TCCEEECCSSCCE------------EECCGGGGCCCTTCCEEECCSSE
T ss_pred             EEeCCCCccCCcCChHHhcCC-----------CCCeEECcCCccc------------CcCCHHHhhhhhcCcEEECcCCe
Confidence            9999999887 5777777555           4555677777654            23456677776 78888887775


Q ss_pred             CC
Q 048809          400 EK  401 (878)
Q Consensus       400 ~~  401 (878)
                      ..
T Consensus       186 l~  187 (313)
T 1ogq_A          186 LT  187 (313)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=1.8e-17  Score=174.10  Aligned_cols=173  Identities=23%  Similarity=0.388  Sum_probs=123.8

Q ss_pred             cccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCC-CCCC-CccccCCCCCc
Q 048809          224 DVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMH-LLAL-PSSLGLLQNLQ  299 (878)
Q Consensus       224 ~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~-i~~l-p~~i~~L~~L~  299 (878)
                      ..+.++++|++++|.++.++.. + .+++|++|++++|.+..++...|..+++|++|++++|. +..+ |..+..+++|+
T Consensus        29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~  108 (285)
T 1ozn_A           29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (285)
T ss_dssp             TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence            4567899999999999887753 3 78899999999998888866667899999999999997 7777 67788999999


Q ss_pred             EEEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccc
Q 048809          300 TLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGER  376 (878)
Q Consensus       300 ~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~  376 (878)
                      +|++++|.++.+  ..++++++|++|++++|.++.+|.. ++++++|++|           ++.+|.+.           
T Consensus       109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-----------~l~~n~l~-----------  166 (285)
T 1ozn_A          109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL-----------FLHGNRIS-----------  166 (285)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-----------ECCSSCCC-----------
T ss_pred             EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE-----------ECCCCccc-----------
Confidence            999999998765  5688899999999999988887765 6666655554           55544433           


Q ss_pred             cccCcccccCCCCCCEEEeecCCCCCC-CcchhcccCCceEEEE
Q 048809          377 RNASLHELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRIL  419 (878)
Q Consensus       377 ~~~~~~~L~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~  419 (878)
                       ......+..+++|+.|++++|....+ |..+..+++|+.|++.
T Consensus       167 -~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  209 (285)
T 1ozn_A          167 -SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF  209 (285)
T ss_dssp             -EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             -ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence             11112344455555555555554433 3344445555555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.73  E-value=2.3e-17  Score=175.32  Aligned_cols=170  Identities=21%  Similarity=0.297  Sum_probs=86.1

Q ss_pred             cCCCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCC---CchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcE
Q 048809          226 LKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKI---PDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQT  300 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l---~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~  300 (878)
                      +.++++|++++|.++.+|...  .+++|++|++++|.+..+   +.. +..+++|++|++++|.+..+|..+..+++|++
T Consensus        27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~  105 (306)
T 2z66_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH  105 (306)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred             CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccChhhcCCCCCCCE
Confidence            445555555555555555432  555555555555544433   222 24455555555555555555555555555555


Q ss_pred             EEccCCCCCCc---ccccCcccCcEEEeeCCCcccch-HhhcccccCcccccccccCCcEEEccCCCCCccccccccccc
Q 048809          301 LSLDYCELGDM---AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGER  376 (878)
Q Consensus       301 L~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~  376 (878)
                      |++++|.++.+   ..+.++++|++|++++|.+...+ ..+++           +++|+.|++.+|.+..          
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------l~~L~~L~l~~n~l~~----------  164 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-----------LSSLEVLKMAGNSFQE----------  164 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-----------CTTCCEEECTTCEEGG----------
T ss_pred             EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-----------CcCCCEEECCCCcccc----------
Confidence            55555554433   24555555555555555544332 22332           3344555665554430          


Q ss_pred             cccCcccccCCCCCCEEEeecCCCCCC-CcchhcccCCceEEE
Q 048809          377 RNASLHELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRI  418 (878)
Q Consensus       377 ~~~~~~~L~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l  418 (878)
                       ...+..+..+++|+.|++++|....+ |..+..+++|+.|++
T Consensus       165 -~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  206 (306)
T 2z66_A          165 -NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  206 (306)
T ss_dssp             -GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             -ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence             01234455666666666666655444 333333444444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.73  E-value=2.3e-16  Score=181.78  Aligned_cols=119  Identities=18%  Similarity=0.197  Sum_probs=94.0

Q ss_pred             CCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEeeCC
Q 048809          249 PQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGS  328 (878)
Q Consensus       249 ~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~  328 (878)
                      .++++|+++++.+..+|..++   ++|++|++++|.++.+|.   .+++|++|+|++|.++.++.  .+.+|++|++++|
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N  111 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSN  111 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSC
T ss_pred             CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCC
Confidence            368999999999999998753   799999999999999988   57899999999999888755  7899999999999


Q ss_pred             CcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCc
Q 048809          329 DMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPR  405 (878)
Q Consensus       329 ~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~  405 (878)
                      .++.+|.              .+++|+.|++.+|.+..             .+.   .+++|++|++++|....+|.
T Consensus       112 ~l~~l~~--------------~l~~L~~L~L~~N~l~~-------------lp~---~l~~L~~L~Ls~N~l~~l~~  158 (622)
T 3g06_A          112 PLTHLPA--------------LPSGLCKLWIFGNQLTS-------------LPV---LPPGLQELSVSDNQLASLPA  158 (622)
T ss_dssp             CCCCCCC--------------CCTTCCEEECCSSCCSC-------------CCC---CCTTCCEEECCSSCCSCCCC
T ss_pred             cCCCCCC--------------CCCCcCEEECCCCCCCc-------------CCC---CCCCCCEEECcCCcCCCcCC
Confidence            8888776              23456777888776651             111   23678888888887766654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.71  E-value=1.1e-16  Score=179.37  Aligned_cols=241  Identities=21%  Similarity=0.272  Sum_probs=125.1

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCC
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCEL  308 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l  308 (878)
                      +.++..+..++.+|..+. +++++|++++|.+..++...|.++++|++|+|++|.+..++ ..|..+++|++|+|++|.+
T Consensus        46 ~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             CEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            455555556666665442 46666666666666665555566666666666666665553 4556666666666666666


Q ss_pred             CCc--ccccCcccCcEEEeeCCCcccchH-hhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809          309 GDM--AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN  385 (878)
Q Consensus       309 ~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~  385 (878)
                      +.+  ..+..+++|++|++++|.++.+|. .+.++++           |+.|++.++...           .......+.
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~-----------L~~L~l~~~~~l-----------~~i~~~~~~  182 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS-----------LRRLDLGELKRL-----------SYISEGAFE  182 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT-----------CCEEECCCCTTC-----------CEECTTTTT
T ss_pred             CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc-----------cCEeCCCCCCCc-----------ceeCcchhh
Confidence            554  346666666666666666665554 2443333           333344432111           001122344


Q ss_pred             CCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEe
Q 048809          386 NLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCL  465 (878)
Q Consensus       386 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l  465 (878)
                      ++++|+.|++++|....+|. +..+++|+.|+++.+....                       ........+++|++|++
T Consensus       183 ~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~L  238 (440)
T 3zyj_A          183 GLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSA-----------------------IRPGSFQGLMHLQKLWM  238 (440)
T ss_dssp             TCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCE-----------------------ECTTTTTTCTTCCEEEC
T ss_pred             cccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCc-----------------------cChhhhccCccCCEEEC
Confidence            45555555555555554442 3344555555543211100                       00111123566666766


Q ss_pred             cCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccc
Q 048809          466 GGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLS  526 (878)
Q Consensus       466 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  526 (878)
                      .++.........+  ..+++|++|+++++ .+..++..      ....+++|+.|++++.+
T Consensus       239 ~~n~l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~~~~------~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          239 IQSQIQVIERNAF--DNLQSLVEINLAHN-NLTLLPHD------LFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TTCCCCEECTTSS--TTCTTCCEEECTTS-CCCCCCTT------TTSSCTTCCEEECCSSC
T ss_pred             CCCceeEEChhhh--cCCCCCCEEECCCC-CCCccChh------HhccccCCCEEEcCCCC
Confidence            6654322111122  35778888888775 34433221      34557778888887643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.71  E-value=1.1e-16  Score=179.87  Aligned_cols=242  Identities=21%  Similarity=0.250  Sum_probs=128.8

Q ss_pred             CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCC
Q 048809          229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCE  307 (878)
Q Consensus       229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~  307 (878)
                      .+.++..+..++.+|..+. +++++|++++|.+..++...|.++++|++|+|++|.+..++ ..|..+++|++|+|++|.
T Consensus        56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            3455666666666665442 56666666666666665555666666677777666666553 556666666777766666


Q ss_pred             CCCc--ccccCcccCcEEEeeCCCcccchH-hhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809          308 LGDM--AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL  384 (878)
Q Consensus       308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  384 (878)
                      ++.+  ..++++++|++|++++|.++.+|. .+.++++|           +.|++.++...           .......+
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-----------~~L~l~~~~~l-----------~~i~~~~~  192 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL-----------MRLDLGELKKL-----------EYISEGAF  192 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC-----------CEEECCCCTTC-----------CEECTTTT
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc-----------cEEeCCCCCCc-----------cccChhhc
Confidence            6544  346666666667666666666554 24444333           33344432111           00112234


Q ss_pred             cCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEE
Q 048809          385 NNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLC  464 (878)
Q Consensus       385 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~  464 (878)
                      ..+++|+.|++++|....+|. +..+++|+.|+++.+....                       ........+++|+.|+
T Consensus       193 ~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~  248 (452)
T 3zyi_A          193 EGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPE-----------------------IRPGSFHGLSSLKKLW  248 (452)
T ss_dssp             TTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSE-----------------------ECGGGGTTCTTCCEEE
T ss_pred             cCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcc-----------------------cCcccccCccCCCEEE
Confidence            445555555555555554442 3344555555543211100                       0011122356667777


Q ss_pred             ecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccc
Q 048809          465 LGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLS  526 (878)
Q Consensus       465 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  526 (878)
                      ++++.........+  ..+++|++|+++++ .+..++..      ....+++|+.|++++.+
T Consensus       249 L~~n~l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~~~~------~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          249 VMNSQVSLIERNAF--DGLASLVELNLAHN-NLSSLPHD------LFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CTTSCCCEECTTTT--TTCTTCCEEECCSS-CCSCCCTT------SSTTCTTCCEEECCSSC
T ss_pred             eCCCcCceECHHHh--cCCCCCCEEECCCC-cCCccChH------HhccccCCCEEEccCCC
Confidence            76654322211122  45778888888776 34433221      34557778888887643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.71  E-value=5.9e-17  Score=175.93  Aligned_cols=165  Identities=22%  Similarity=0.326  Sum_probs=111.4

Q ss_pred             EEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCCCC
Q 048809          231 AISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCELG  309 (878)
Q Consensus       231 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~l~  309 (878)
                      ..+.+++.++++|..+. ++|++|++++|.+..++...|.++++|++|++++|.+..+ |..++++++|++|++++|.++
T Consensus        35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  113 (353)
T 2z80_A           35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS  113 (353)
T ss_dssp             EEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             EeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence            46667777777776542 4788888888877777776677788888888888877766 455777888888888888777


Q ss_pred             Cc--ccccCcccCcEEEeeCCCcccchH--hhcccccCcccccccccCCcEEEccCCC-CCccccccccccccccCcccc
Q 048809          310 DM--AIIGDLKKLVILALRGSDMKELVG--EIGQLTQLRLLIAPILSRLEELYIGESP-IEWGKVEGVDGERRNASLHEL  384 (878)
Q Consensus       310 ~l--~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~Lip~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~L  384 (878)
                      .+  ..++++++|++|++++|.++.+|.  .+++++           +|+.|++.+|. +.            ......+
T Consensus       114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~-----------~L~~L~l~~n~~~~------------~~~~~~~  170 (353)
T 2z80_A          114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT-----------KLQILRVGNMDTFT------------KIQRKDF  170 (353)
T ss_dssp             SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT-----------TCCEEEEEESSSCC------------EECTTTT
T ss_pred             cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC-----------CCcEEECCCCcccc------------ccCHHHc
Confidence            65  337778888888888877777665  344443           44555666552 22            1223456


Q ss_pred             cCCCCCCEEEeecCCCCCC-CcchhcccCCceEEEE
Q 048809          385 NNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRIL  419 (878)
Q Consensus       385 ~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~  419 (878)
                      +.+++|+.|++++|..... |..+..+++|+.|++.
T Consensus       171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  206 (353)
T 2z80_A          171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH  206 (353)
T ss_dssp             TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence            6677777777777765544 5555566666666665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.70  E-value=1.6e-17  Score=177.30  Aligned_cols=259  Identities=17%  Similarity=0.083  Sum_probs=137.0

Q ss_pred             EeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCCCcccccCcccCcEEEeeCCCcccc
Q 048809          255 RIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKEL  333 (878)
Q Consensus       255 ~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~l  333 (878)
                      +++.+.+...+..++..+++|++|+|++|.++.++ ..++.+++|++|++++|.++.+..++.+++|++|++++|.++.+
T Consensus        16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l   95 (317)
T 3o53_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL   95 (317)
T ss_dssp             SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEE
T ss_pred             eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccc
Confidence            33333333444455555666666666666665554 45666666666666666665543366666666666666655544


Q ss_pred             hHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCc-chhcccC
Q 048809          334 VGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPR-DLSFFKM  412 (878)
Q Consensus       334 p~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~-~~~~l~~  412 (878)
                      |.               .++|+.|++.+|.+..            ..   ...+++|+.|++++|....++. .+..+  
T Consensus        96 ~~---------------~~~L~~L~l~~n~l~~------------~~---~~~~~~L~~L~l~~N~l~~~~~~~~~~l--  143 (317)
T 3o53_A           96 LV---------------GPSIETLHAANNNISR------------VS---CSRGQGKKNIYLANNKITMLRDLDEGCR--  143 (317)
T ss_dssp             EE---------------CTTCCEEECCSSCCSE------------EE---ECCCSSCEEEECCSSCCCSGGGBCTGGG--
T ss_pred             cC---------------CCCcCEEECCCCccCC------------cC---ccccCCCCEEECCCCCCCCccchhhhcc--
Confidence            32               1344555665555431            00   1124566677776666555432 22222  


Q ss_pred             CceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCcCCcccccccCcCCCCCCCcEEEEc
Q 048809          413 LQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVV  492 (878)
Q Consensus       413 L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~  492 (878)
                                                                   ++|+.|+++++.........+ ...+++|++|+++
T Consensus       144 ---------------------------------------------~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~  177 (317)
T 3o53_A          144 ---------------------------------------------SRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQ  177 (317)
T ss_dssp             ---------------------------------------------SSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECT
T ss_pred             ---------------------------------------------CCCCEEECCCCCCCcccHHHH-hhccCcCCEEECC
Confidence                                                         333444443332211111111 1235667777776


Q ss_pred             cCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccE
Q 048809          493 KNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQS  572 (878)
Q Consensus       493 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~  572 (878)
                      ++. +..++        ....+++|+.|+++++ .++.++.   .+..+++|+.|++.++ +++.+|.  .+..+++|+.
T Consensus       178 ~N~-l~~~~--------~~~~l~~L~~L~Ls~N-~l~~l~~---~~~~l~~L~~L~L~~N-~l~~l~~--~~~~l~~L~~  241 (317)
T 3o53_A          178 YNF-IYDVK--------GQVVFAKLKTLDLSSN-KLAFMGP---EFQSAAGVTWISLRNN-KLVLIEK--ALRFSQNLEH  241 (317)
T ss_dssp             TSC-CCEEE--------CCCCCTTCCEEECCSS-CCCEECG---GGGGGTTCSEEECTTS-CCCEECT--TCCCCTTCCE
T ss_pred             CCc-Ccccc--------cccccccCCEEECCCC-cCCcchh---hhcccCcccEEECcCC-cccchhh--HhhcCCCCCE
Confidence            653 33332        2234666777777663 4444422   2456677777777774 5666654  3456777777


Q ss_pred             EEEecCCcc-hhhhcccccccccCCCCccccccccceeecccCCCcce
Q 048809          573 IEVTGCQNL-EVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTS  619 (878)
Q Consensus       573 L~l~~c~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~  619 (878)
                      |++++++.. ..++....            .+++|+.|++.+++.++.
T Consensus       242 L~l~~N~~~~~~~~~~~~------------~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          242 FDLRGNGFHCGTLRDFFS------------KNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             EECTTCCCBHHHHHHHHH------------TCHHHHHHHHHHHHHHHS
T ss_pred             EEccCCCccCcCHHHHHh------------ccccceEEECCCchhccC
Confidence            777776554 23332222            267777777776655554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.69  E-value=6.6e-18  Score=180.20  Aligned_cols=247  Identities=15%  Similarity=0.095  Sum_probs=173.4

Q ss_pred             CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEee
Q 048809          247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALR  326 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~  326 (878)
                      .+++|++|++++|.+..++...|.++++|++|+|++|.+..+++ +..+++|++|++++|.++.++   ..++|++|+++
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~l~  107 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAA  107 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEECC
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEECC
Confidence            46789999999998888887778999999999999999987665 899999999999999876543   34889999999


Q ss_pred             CCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCcc
Q 048809          327 GSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRD  406 (878)
Q Consensus       327 ~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~  406 (878)
                      +|.++.++..             .+++|+.|++.+|.+.            ......+..+++|+.|++++|....++..
T Consensus       108 ~n~l~~~~~~-------------~~~~L~~L~l~~N~l~------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (317)
T 3o53_A          108 NNNISRVSCS-------------RGQGKKNIYLANNKIT------------MLRDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (317)
T ss_dssp             SSCCSEEEEC-------------CCSSCEEEECCSSCCC------------SGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred             CCccCCcCcc-------------ccCCCCEEECCCCCCC------------CccchhhhccCCCCEEECCCCCCCcccHH
Confidence            9988876642             3456778888888776            22334567788999999998876654321


Q ss_pred             hhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCcCCcccccccCcCCCCCCC
Q 048809          407 LSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVLYGSDGEGFPQL  486 (878)
Q Consensus       407 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L  486 (878)
                      .                                             +...+++|+.|+++++... .+ +..  ..+++|
T Consensus       163 ~---------------------------------------------~~~~l~~L~~L~L~~N~l~-~~-~~~--~~l~~L  193 (317)
T 3o53_A          163 E---------------------------------------------LAASSDTLEHLNLQYNFIY-DV-KGQ--VVFAKL  193 (317)
T ss_dssp             G---------------------------------------------GGGGTTTCCEEECTTSCCC-EE-ECC--CCCTTC
T ss_pred             H---------------------------------------------HhhccCcCCEEECCCCcCc-cc-ccc--cccccC
Confidence            1                                             0012355666666655432 22 222  237888


Q ss_pred             cEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhh
Q 048809          487 KRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRG  566 (878)
Q Consensus       487 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~  566 (878)
                      ++|+++++. +..++.       ....+++|+.|+++++ .++.++   ..+..+++|+.|++.+++-.....+ .++..
T Consensus       194 ~~L~Ls~N~-l~~l~~-------~~~~l~~L~~L~L~~N-~l~~l~---~~~~~l~~L~~L~l~~N~~~~~~~~-~~~~~  260 (317)
T 3o53_A          194 KTLDLSSNK-LAFMGP-------EFQSAAGVTWISLRNN-KLVLIE---KALRFSQNLEHFDLRGNGFHCGTLR-DFFSK  260 (317)
T ss_dssp             CEEECCSSC-CCEECG-------GGGGGTTCSEEECTTS-CCCEEC---TTCCCCTTCCEEECTTCCCBHHHHH-HHHHT
T ss_pred             CEEECCCCc-CCcchh-------hhcccCcccEEECcCC-cccchh---hHhhcCCCCCEEEccCCCccCcCHH-HHHhc
Confidence            999988763 554432       3456788999999885 566553   2356788999999998654312222 35677


Q ss_pred             ccCccEEEEecCCcchhh
Q 048809          567 LQQLQSIEVTGCQNLEVI  584 (878)
Q Consensus       567 l~~L~~L~l~~c~~l~~~  584 (878)
                      +++|+.++++++..+...
T Consensus       261 ~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          261 NQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             CHHHHHHHHHHHHHHHSS
T ss_pred             cccceEEECCCchhccCC
Confidence            888888888776555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.68  E-value=4.1e-16  Score=163.75  Aligned_cols=166  Identities=20%  Similarity=0.274  Sum_probs=133.8

Q ss_pred             CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCC
Q 048809          229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCE  307 (878)
Q Consensus       229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~  307 (878)
                      .+.++.+++.++.+|..+ .++|++|++++|.+..++...|..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus        13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            378889999999998755 57999999999999999988889999999999999999877 7889999999999999997


Q ss_pred             -CCCc--ccccCcccCcEEEeeCCCcccch-HhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccc
Q 048809          308 -LGDM--AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHE  383 (878)
Q Consensus       308 -l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  383 (878)
                       ++.+  ..+.++++|++|++++|.++.++ ..++++           ++|+.|++.+|.+.            ......
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----------~~L~~L~l~~n~l~------------~~~~~~  148 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-----------AALQYLYLQDNALQ------------ALPDDT  148 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC-----------TTCCEEECCSSCCC------------CCCTTT
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCC-----------cCCCEEECCCCccc------------ccCHhH
Confidence             8765  67999999999999999888774 345544           45667788888765            223345


Q ss_pred             ccCCCCCCEEEeecCCCCCCCcc-hhcccCCceEEE
Q 048809          384 LNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRI  418 (878)
Q Consensus       384 L~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l  418 (878)
                      ++.+++|+.|++++|....+|.. +..+++|+.|++
T Consensus       149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  184 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             hccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence            78889999999999987766653 334455555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.68  E-value=3.6e-16  Score=175.73  Aligned_cols=190  Identities=18%  Similarity=0.271  Sum_probs=147.4

Q ss_pred             CCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-cc
Q 048809          217 LTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LG  293 (878)
Q Consensus       217 ~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~  293 (878)
                      +...| ..++.++++|++++|.++.++.. + .+++|++|++++|.+..++...|..+++|++|+|++|.++.+|.. +.
T Consensus        66 l~~iP-~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  144 (452)
T 3zyi_A           66 LSEVP-QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE  144 (452)
T ss_dssp             CSSCC-SCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred             cCccC-CCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence            33444 34667899999999999987543 3 899999999999999999888889999999999999999988755 88


Q ss_pred             CCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCC-CcccchHh-hcccccCccc---------ccc--cccCCcEEE
Q 048809          294 LLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGS-DMKELVGE-IGQLTQLRLL---------IAP--ILSRLEELY  358 (878)
Q Consensus       294 ~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~-~l~~lp~~-i~~L~~L~~L---------ip~--~l~~L~~L~  358 (878)
                      .+++|++|+|++|.++.+  ..+.++++|++|++++| .+..+|.. +.++.+|++|         +|.  .+.+|+.|+
T Consensus       145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~  224 (452)
T 3zyi_A          145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELE  224 (452)
T ss_dssp             SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEE
T ss_pred             ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEE
Confidence            999999999999999876  57999999999999996 77777764 7778777777         232  556777777


Q ss_pred             ccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCC-cchhcccCCceEEEE
Q 048809          359 IGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRIL  419 (878)
Q Consensus       359 l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~  419 (878)
                      +++|.+.            ...+..+.++++|+.|++++|....++ ..+..+++|+.|+++
T Consensus       225 Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  274 (452)
T 3zyi_A          225 MSGNHFP------------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA  274 (452)
T ss_dssp             CTTSCCS------------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcCCcCc------------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence            7777655            233456667777777777777665543 334456667777664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.67  E-value=5e-16  Score=173.94  Aligned_cols=191  Identities=18%  Similarity=0.287  Sum_probs=145.7

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cc
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SL  292 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i  292 (878)
                      .+...| ..++.+++.|++++|.++.++.. + .+++|++|++++|.+..++...|..+++|++|+|++|.++.+|. .+
T Consensus        54 ~l~~iP-~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  132 (440)
T 3zyj_A           54 NLREVP-DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF  132 (440)
T ss_dssp             CCSSCC-SCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred             CcCcCC-CCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence            344444 34678899999999999987643 3 89999999999999999998889999999999999999999875 68


Q ss_pred             cCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCC-CcccchH-hhcccccCccc---------ccc--cccCCcEE
Q 048809          293 GLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGS-DMKELVG-EIGQLTQLRLL---------IAP--ILSRLEEL  357 (878)
Q Consensus       293 ~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L---------ip~--~l~~L~~L  357 (878)
                      ..+++|++|+|++|.++.+  ..+.++++|++|++++| .+..++. .+.++.+|++|         +|.  .+++|+.|
T Consensus       133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L  212 (440)
T 3zyj_A          133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDEL  212 (440)
T ss_dssp             CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEE
T ss_pred             hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEE
Confidence            9999999999999999876  57999999999999996 6777776 47777777777         332  55666677


Q ss_pred             EccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCC-cchhcccCCceEEEE
Q 048809          358 YIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRIL  419 (878)
Q Consensus       358 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~  419 (878)
                      ++++|.+.            ...+..+..+++|+.|++++|.+..++ ..+..+++|+.|+++
T Consensus       213 ~Ls~N~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  263 (440)
T 3zyj_A          213 DLSGNHLS------------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA  263 (440)
T ss_dssp             ECTTSCCC------------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred             ECCCCccC------------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence            77666554            223455666667777777766655443 233455666666653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.66  E-value=6e-16  Score=157.79  Aligned_cols=144  Identities=15%  Similarity=0.232  Sum_probs=101.0

Q ss_pred             CCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCC-CCCCCc-cccCCCCCcEEEccC-CCCCCc--c
Q 048809          238 NINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMH-LLALPS-SLGLLQNLQTLSLDY-CELGDM--A  312 (878)
Q Consensus       238 ~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~-i~~lp~-~i~~L~~L~~L~L~~-~~l~~l--~  312 (878)
                      .++.+|.  -.++|++|++++|.+..+|...|..+++|++|++++|. ++.+|. .+..+++|++|++++ |.++.+  .
T Consensus        22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            3677777  23488888888888888888777888888888888886 877765 678888888888888 778765  4


Q ss_pred             cccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCC-CCCccccccccccccccCcccccCCCCCC
Q 048809          313 IIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGES-PIEWGKVEGVDGERRNASLHELNNLSKLT  391 (878)
Q Consensus       313 ~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~L~  391 (878)
                      .+.++++|++|++++|.++.+|. ++++.+|+        .|+.|++.+| .+.            ......+..+++|+
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~--------~L~~L~l~~N~~l~------------~i~~~~~~~l~~L~  158 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTD--------IFFILEITDNPYMT------------SIPVNAFQGLCNET  158 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCSCCC-CTTCCBCC--------SEEEEEEESCTTCC------------EECTTTTTTTBSSE
T ss_pred             HhCCCCCCCEEeCCCCCCccccc-cccccccc--------cccEEECCCCcchh------------hcCcccccchhcce
Confidence            67888888888888888877775 55554433        1245666665 443            11223355566666


Q ss_pred             -EEEeecCCCCCCC
Q 048809          392 -SLEILIQDEKTLP  404 (878)
Q Consensus       392 -~L~l~~~~~~~~~  404 (878)
                       .|++++|....+|
T Consensus       159 ~~L~l~~n~l~~i~  172 (239)
T 2xwt_C          159 LTLKLYNNGFTSVQ  172 (239)
T ss_dssp             EEEECCSCCCCEEC
T ss_pred             eEEEcCCCCCcccC
Confidence             6666666554444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.66  E-value=1.4e-15  Score=161.10  Aligned_cols=178  Identities=18%  Similarity=0.265  Sum_probs=127.8

Q ss_pred             cCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809          226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY  305 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~  305 (878)
                      ++++++|++.++.++.++....+++|++|++++|.+..++.  |..+++|++|++++|.+..+| .+..+++|++|++++
T Consensus        40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred             cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence            45677777777777776654467777777777777666665  577777777777777776664 567777777777777


Q ss_pred             CCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCccc---------ccc--cccCCcEEEccCCCCCccccccccc
Q 048809          306 CELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL---------IAP--ILSRLEELYIGESPIEWGKVEGVDG  374 (878)
Q Consensus       306 ~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L---------ip~--~l~~L~~L~l~~~~~~~~~~~~~~~  374 (878)
                      |.++.++.++++++|++|++++|.++.++. ++++++|++|         ++.  .+++|+.|++.+|.+.         
T Consensus       117 n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~---------  186 (308)
T 1h6u_A          117 TQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS---------  186 (308)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC---------
T ss_pred             CCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccC---------
Confidence            777766557777777777777777766665 6666666666         222  5678888899888765         


Q ss_pred             cccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecc
Q 048809          375 ERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGS  422 (878)
Q Consensus       375 ~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~  422 (878)
                           .+..+..+++|+.|++++|....++. +..+++|+.|++..+.
T Consensus       187 -----~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          187 -----DISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT  228 (308)
T ss_dssp             -----CCGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred             -----cChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence                 12237788899999999998887774 6688899999987543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.66  E-value=6.2e-16  Score=164.23  Aligned_cols=171  Identities=24%  Similarity=0.323  Sum_probs=137.3

Q ss_pred             ccCCCcEEEeeCCCCCCCC---CC-CCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc--cccCCCCC
Q 048809          225 VLKDCTAISLNNSNINELP---QG-FECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS--SLGLLQNL  298 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~---~~-~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~--~i~~L~~L  298 (878)
                      ...++++|++++|.++.+.   .. ..+++|++|++++|.+..+|.. |..+++|++|++++|.+..++.  .+..+++|
T Consensus        50 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  128 (306)
T 2z66_A           50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  128 (306)
T ss_dssp             TCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTC
T ss_pred             ccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCCEEECCCCcccccccchhhhhccCC
Confidence            4678999999999988652   22 2789999999999988888877 5899999999999999988864  78999999


Q ss_pred             cEEEccCCCCCCc--ccccCcccCcEEEeeCCCccc--chHhhcccccCcccccccccCCcEEEccCCCCCccccccccc
Q 048809          299 QTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKE--LVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDG  374 (878)
Q Consensus       299 ~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~  374 (878)
                      ++|++++|.+...  ..++++++|++|++++|.+..  +|..++.++           +|+.|++++|.+.         
T Consensus       129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-----------~L~~L~Ls~n~l~---------  188 (306)
T 2z66_A          129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-----------NLTFLDLSQCQLE---------  188 (306)
T ss_dssp             CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-----------TCCEEECTTSCCC---------
T ss_pred             CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc-----------CCCEEECCCCCcC---------
Confidence            9999999998743  678999999999999998775  666666554           5566688777665         


Q ss_pred             cccccCcccccCCCCCCEEEeecCCCCCCCc-chhcccCCceEEEE
Q 048809          375 ERRNASLHELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRIL  419 (878)
Q Consensus       375 ~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~  419 (878)
                         ...+..+..+++|+.|++++|....++. .+..+++|+.|+++
T Consensus       189 ---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  231 (306)
T 2z66_A          189 ---QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS  231 (306)
T ss_dssp             ---EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred             ---CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence               2234567778888888888888776654 44567778887775

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.65  E-value=2.1e-15  Score=156.84  Aligned_cols=174  Identities=22%  Similarity=0.385  Sum_probs=134.7

Q ss_pred             cccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cccCCCCCcE
Q 048809          224 DVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SLGLLQNLQT  300 (878)
Q Consensus       224 ~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~  300 (878)
                      .++.++++|++++|.++.++.. + .+++|++|++++|.+..+|..+|..+++|++|++++|.+..+|. .+..+++|++
T Consensus        34 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  113 (270)
T 2o6q_A           34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE  113 (270)
T ss_dssp             CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred             CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence            3556788888888888887753 3 78888888888888888888878888888888888888887764 4578888888


Q ss_pred             EEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCcccccccccccc
Q 048809          301 LSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERR  377 (878)
Q Consensus       301 L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  377 (878)
                      |++++|.++.+  ..++++++|++|++++|.++.+|.. +++           +++|+.|++.+|.+.            
T Consensus       114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----------l~~L~~L~L~~n~l~------------  170 (270)
T 2o6q_A          114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK-----------LTSLKELRLYNNQLK------------  170 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------CTTCCEEECCSSCCS------------
T ss_pred             EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC-----------CcccceeEecCCcCc------------
Confidence            88888887765  4578888888888888888877765 444           446677788888765            


Q ss_pred             ccCcccccCCCCCCEEEeecCCCCCCCcc-hhcccCCceEEEEe
Q 048809          378 NASLHELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILI  420 (878)
Q Consensus       378 ~~~~~~L~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~  420 (878)
                      ......+.++++|+.|++++|....+|.. +..+++|+.|++..
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence            22334577889999999999998888765 45788899988864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.64  E-value=6.9e-18  Score=190.85  Aligned_cols=393  Identities=16%  Similarity=0.097  Sum_probs=229.2

Q ss_pred             cCCCcEEEeeCCCCCCCCCC--C-CCCCccEEEeecCCCCC-----CCchhhcCCCCCcEEEeeCCCCCC-CCccc-cCC
Q 048809          226 LKDCTAISLNNSNINELPQG--F-ECPQLKYFRIHNDHSLK-----IPDNFFTGMTELRVLDFTRMHLLA-LPSSL-GLL  295 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~--~-~~~~Lr~L~l~~~~~~~-----l~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i-~~L  295 (878)
                      ++++++|+++++.++..+..  + .+++|++|++++|.+..     ++. .+..+++|++|+|++|.+.. .+..+ ..+
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l   80 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGL   80 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence            34678889988887654321  2 67889999999987663     333 35788999999999998854 22233 334


Q ss_pred             C----CCcEEEccCCCCCC-----c-ccccCcccCcEEEeeCCCcccc-hHhhcccccCcccccccccCCcEEEccCCCC
Q 048809          296 Q----NLQTLSLDYCELGD-----M-AIIGDLKKLVILALRGSDMKEL-VGEIGQLTQLRLLIAPILSRLEELYIGESPI  364 (878)
Q Consensus       296 ~----~L~~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~  364 (878)
                      .    +|++|++++|.++.     + ..+.++++|++|++++|.+... +..+...      +....++|+.|++.+|.+
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~------l~~~~~~L~~L~L~~n~l  154 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG------LLDPQCRLEKLQLEYCSL  154 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH------HTSTTCCCCEEECTTSCC
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH------HhcCCCcceEEECCCCCC
Confidence            4    69999999998773     2 6788899999999999876542 2222210      001234677788888766


Q ss_pred             CccccccccccccccCcccccCCCCCCEEEeecCCCCCCC-cchh-----cccCCceEEEEecccccccccchhhhhhhh
Q 048809          365 EWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLP-RDLS-----FFKMLQRYRILIGSQWTWDYISSEISEIFR  438 (878)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~-~~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~  438 (878)
                      ...        ........+..+++|+.|++++|...... ..+.     ..++|+.|++..+.....   .        
T Consensus       155 ~~~--------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~---~--------  215 (461)
T 1z7x_W          155 SAA--------SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD---N--------  215 (461)
T ss_dssp             BGG--------GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT---H--------
T ss_pred             CHH--------HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH---H--------
Confidence            511        11123455666788888888887654321 1111     244788887753321100   0        


Q ss_pred             hhhccCCccccchhHHhhccccceEEecCcCCccccc----ccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcc
Q 048809          439 LMVASGANICLNGGHIMQLKGIKDLCLGGSLDMKSVL----YGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAF  514 (878)
Q Consensus       439 ~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  514 (878)
                              ..........+++|++|+++++.......    +.+. ..+++|++|++.+|. +...... .... ....+
T Consensus       216 --------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~-~~~~~L~~L~L~~n~-l~~~~~~-~l~~-~l~~~  283 (461)
T 1z7x_W          216 --------CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL-HPSSRLRTLWIWECG-ITAKGCG-DLCR-VLRAK  283 (461)
T ss_dssp             --------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT-STTCCCCEEECTTSC-CCHHHHH-HHHH-HHHHC
T ss_pred             --------HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh-cCCCCceEEECcCCC-CCHHHHH-HHHH-HHhhC
Confidence                    00001112246888999998875322111    1111 247899999998873 3321000 0000 33457


Q ss_pred             cccceeeccccccccceecCCCC---ccccCCccEEEeecCCCcccccc---hhhhhhccCccEEEEecCCcchhhhccc
Q 048809          515 PVLESLLLRHLSNLEKICRGPLA---AESFCKVKDIRVEWCDKLKNVFP---LVIGRGLQQLQSIEVTGCQNLEVIFAAE  588 (878)
Q Consensus       515 ~~L~~L~L~~~~~L~~~~~~~~~---~~~l~~L~~L~l~~c~~L~~l~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~  588 (878)
                      ++|+.|+++++ .+.........   ....++|+.|++.+|. ++....   ...+..+++|++|++++|. +.......
T Consensus       284 ~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~  360 (461)
T 1z7x_W          284 ESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRE  360 (461)
T ss_dssp             TTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHH
T ss_pred             CCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHH
Confidence            89999999985 33321100000   1123699999999984 544311   1245678999999999984 44432211


Q ss_pred             ccccccCCCCcc-ccccccceeecccCCCcc-----eecCCCcccccCCcceEEEecCCCcc-cc-ccccccccccccce
Q 048809          589 RGDESSNSNTQV-IELTQLTTLELCSLPQLT-----SFCTGDLHFEFPSLEKLKILECPQVK-FK-STIHESTKKRFHTI  660 (878)
Q Consensus       589 ~~~~~~~~~~~~-~~~~~L~~L~L~~c~~l~-----~~~~~~~~~~~~~L~~L~l~~C~~l~-lp-~~~~~~~~~~l~~L  660 (878)
                      ...       .. ...++|++|++++|. ++     .++.  ....+++|++|++++|+ ++ .. ..+.+.-.....+|
T Consensus       361 l~~-------~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~--~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L  429 (461)
T 1z7x_W          361 LCQ-------GLGQPGSVLRVLWLADCD-VSDSSCSSLAA--TLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLL  429 (461)
T ss_dssp             HHH-------HHTSTTCCCCEEECTTSC-CCHHHHHHHHH--HHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCC
T ss_pred             HHH-------HHcCCCCceEEEECCCCC-CChhhHHHHHH--HHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcch
Confidence            100       00 015799999999984 44     3332  24468999999999974 44 11 11111100014578


Q ss_pred             eEEEEecccc
Q 048809          661 KVLCIEGYDY  670 (878)
Q Consensus       661 ~~L~l~~c~~  670 (878)
                      +.|.+.++..
T Consensus       430 ~~L~~~~~~~  439 (461)
T 1z7x_W          430 EQLVLYDIYW  439 (461)
T ss_dssp             CEEECTTCCC
T ss_pred             hheeeccccc
Confidence            8888888765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.64  E-value=1.5e-15  Score=159.24  Aligned_cols=179  Identities=20%  Similarity=0.241  Sum_probs=104.1

Q ss_pred             CCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCC
Q 048809          228 DCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCE  307 (878)
Q Consensus       228 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~  307 (878)
                      +++.+++.++.++.+|..+. +++++|++++|.+..++...|..+++|++|+|++|.++.+|.. +.+++|++|++++|.
T Consensus        11 ~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~   88 (290)
T 1p9a_G           11 SHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ   88 (290)
T ss_dssp             TCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC
T ss_pred             CccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc
Confidence            34455555555555444332 3455555555544444444445555555555555555444332 444555555555555


Q ss_pred             CCCc-ccccCcccCcEEEeeCCCcccchH-hhcccccCccc---------ccc----cccCCcEEEccCCCCCccccccc
Q 048809          308 LGDM-AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLL---------IAP----ILSRLEELYIGESPIEWGKVEGV  372 (878)
Q Consensus       308 l~~l-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L---------ip~----~l~~L~~L~l~~~~~~~~~~~~~  372 (878)
                      ++.+ ..+..+++|++|++++|.++.+|. .|+++++|++|         +|.    .+++|+.|++.+|.+.       
T Consensus        89 l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------  161 (290)
T 1p9a_G           89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-------  161 (290)
T ss_dssp             CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-------
T ss_pred             CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-------
Confidence            4443 334445555555555555544442 24444444444         111    4567888899988776       


Q ss_pred             cccccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEe
Q 048809          373 DGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI  420 (878)
Q Consensus       373 ~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~  420 (878)
                           ......+..+++|+.|++++|....+|.++....+|+.+.+..
T Consensus       162 -----~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          162 -----ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             -----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred             -----ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence                 1223446788999999999999999999888888899988863

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.64  E-value=1.2e-15  Score=159.24  Aligned_cols=115  Identities=20%  Similarity=0.256  Sum_probs=66.6

Q ss_pred             ccCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEE
Q 048809          225 VLKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTL  301 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L  301 (878)
                      ++.++++|++++|.++.++. .+ .+++|++|++++|.+..++...|..+++|++|++++|.+..++ ..+..+++|++|
T Consensus        26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            34456666666666665543 22 5566666666666665555555566666666666666665543 445666666666


Q ss_pred             EccCCCCCCc--ccccCcccCcEEEeeCCCccc--chHhhcc
Q 048809          302 SLDYCELGDM--AIIGDLKKLVILALRGSDMKE--LVGEIGQ  339 (878)
Q Consensus       302 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~--lp~~i~~  339 (878)
                      ++++|.+..+  ..++++++|++|++++|.++.  +|..+++
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~  147 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN  147 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc
Confidence            6666665544  245666666666666665554  3444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.64  E-value=1.4e-15  Score=155.02  Aligned_cols=186  Identities=13%  Similarity=0.213  Sum_probs=156.1

Q ss_pred             CCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCC-CCCCCchhhcCCCCCcEEEeeC-CCCCCCC-cc
Q 048809          217 LTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDH-SLKIPDNFFTGMTELRVLDFTR-MHLLALP-SS  291 (878)
Q Consensus       217 ~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~-~~~l~~~~~~~l~~Lr~L~Ls~-~~i~~lp-~~  291 (878)
                      ....|.  ++.++++|++++|.++.++.. + .+++|++|++++|. +..++...|..+++|++|++++ |.++.+| ..
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            344454  677899999999999998873 3 89999999999996 9999988889999999999999 9999887 56


Q ss_pred             ccCCCCCcEEEccCCCCCCcccccCcccCc---EEEeeCC-CcccchHh-hcccccCc-cc---------ccc---cccC
Q 048809          292 LGLLQNLQTLSLDYCELGDMAIIGDLKKLV---ILALRGS-DMKELVGE-IGQLTQLR-LL---------IAP---ILSR  353 (878)
Q Consensus       292 i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~---~L~l~~~-~l~~lp~~-i~~L~~L~-~L---------ip~---~l~~  353 (878)
                      +..+++|++|++++|.++.++.++.+.+|+   +|++++| .++.+|.. ++++++|+ +|         +|.   ..++
T Consensus       101 f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~  180 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK  180 (239)
T ss_dssp             EECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCE
T ss_pred             hCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCC
Confidence            899999999999999998886688888888   9999999 99998875 88999999 88         343   2367


Q ss_pred             CcEEEccCCC-CCccccccccccccccCcccccCC-CCCCEEEeecCCCCCCCcchhcccCCceEEE
Q 048809          354 LEELYIGESP-IEWGKVEGVDGERRNASLHELNNL-SKLTSLEILIQDEKTLPRDLSFFKMLQRYRI  418 (878)
Q Consensus       354 L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~l-~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l  418 (878)
                      |+.|++.+|. +.            ......+..+ ++|+.|++++|....+|..  .+++|+.|++
T Consensus       181 L~~L~L~~n~~l~------------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l  233 (239)
T 2xwt_C          181 LDAVYLNKNKYLT------------VIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIA  233 (239)
T ss_dssp             EEEEECTTCTTCC------------EECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEEC
T ss_pred             CCEEEcCCCCCcc------------cCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeec
Confidence            8999999884 65            2233556777 8999999999998888876  6888888876

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.62  E-value=7.5e-16  Score=174.04  Aligned_cols=81  Identities=16%  Similarity=0.203  Sum_probs=43.3

Q ss_pred             CccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEeeCCC
Q 048809          250 QLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSD  329 (878)
Q Consensus       250 ~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~  329 (878)
                      +|++|++++|.+..++...|..+++|++|+|++|.+..+++ ++.+++|++|+|++|.++.++   ..++|++|++++|.
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~~N~  110 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAANNN  110 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECCSSC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECcCCc
Confidence            55555555555555554445555566666666555554433 555555555555555544331   12555555555555


Q ss_pred             cccch
Q 048809          330 MKELV  334 (878)
Q Consensus       330 l~~lp  334 (878)
                      ++.+|
T Consensus       111 l~~~~  115 (487)
T 3oja_A          111 ISRVS  115 (487)
T ss_dssp             CCCEE
T ss_pred             CCCCC
Confidence            54433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.62  E-value=7.4e-15  Score=152.63  Aligned_cols=154  Identities=23%  Similarity=0.384  Sum_probs=131.3

Q ss_pred             ccCCCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cccCCCCCcEE
Q 048809          225 VLKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SLGLLQNLQTL  301 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L  301 (878)
                      ...++++|++++|.++.++...  .+++|++|++++|.+..+|...|..+++|++|++++|.+..+|. .++.+++|++|
T Consensus        59 ~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  138 (270)
T 2o6q_A           59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL  138 (270)
T ss_dssp             SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE
Confidence            4678999999999999998765  79999999999999999999889999999999999999988864 57999999999


Q ss_pred             EccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccc
Q 048809          302 SLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRN  378 (878)
Q Consensus       302 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  378 (878)
                      ++++|.++.+  ..++++++|++|++++|.++.+|.. +.++           ++|+.|++.+|.+.            .
T Consensus       139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~------------~  195 (270)
T 2o6q_A          139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL-----------TELKTLKLDNNQLK------------R  195 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-----------TTCCEEECCSSCCS------------C
T ss_pred             ECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccC-----------CCcCEEECCCCcCC------------c
Confidence            9999999876  4589999999999999999988764 5544           45677799888765            1


Q ss_pred             cCcccccCCCCCCEEEeecCCCC
Q 048809          379 ASLHELNNLSKLTSLEILIQDEK  401 (878)
Q Consensus       379 ~~~~~L~~l~~L~~L~l~~~~~~  401 (878)
                      .....+..+++|+.|++++|...
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          196 VPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCHHHhccccCCCEEEecCCCee
Confidence            22345778899999999998754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.59  E-value=2.1e-14  Score=147.41  Aligned_cols=167  Identities=20%  Similarity=0.374  Sum_probs=107.7

Q ss_pred             CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCC
Q 048809          229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCE  307 (878)
Q Consensus       229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~  307 (878)
                      .++++++++.++.+|..+. +++++|++++|.+..++...|.++++|++|+|++|.+..++ ..+..+++|++|++++|.
T Consensus        16 ~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             GTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence            4567777777777766553 56777777777777766666677777777777777776654 346777777777777777


Q ss_pred             CCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809          308 LGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL  384 (878)
Q Consensus       308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  384 (878)
                      ++.+  ..++.+++|++|++++|.++.+|.. ++++           ++|+.|++.+|.+.            ......+
T Consensus        95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----------~~L~~L~Ls~N~l~------------~~~~~~~  151 (251)
T 3m19_A           95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL-----------TKLKELRLNTNQLQ------------SIPAGAF  151 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----------TTCCEEECCSSCCC------------CCCTTTT
T ss_pred             ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccC-----------CcccEEECcCCcCC------------ccCHHHc
Confidence            6654  4566777777777777777766654 3433           34455566666554            1122345


Q ss_pred             cCCCCCCEEEeecCCCCCCCc-chhcccCCceEEEE
Q 048809          385 NNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRIL  419 (878)
Q Consensus       385 ~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~  419 (878)
                      +.+++|+.|++++|....++. .+..+++|+.|++.
T Consensus       152 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF  187 (251)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence            666777777777776666654 34456667766664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.58  E-value=2.3e-14  Score=149.58  Aligned_cols=152  Identities=20%  Similarity=0.266  Sum_probs=120.2

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cccCCCCCcEEEccCCCC
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SLGLLQNLQTLSLDYCEL  308 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~l  308 (878)
                      ..++..+..+.++|..+. ++|++|++++|.+..++...|.++++|++|++++|.+..++. .+..+++|++|++++|.+
T Consensus        10 ~~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           10 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             TEEECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             ceEEecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            345566667778887653 689999999999999988778999999999999999988764 789999999999999998


Q ss_pred             CCc--ccccCcccCcEEEeeCCCcccchH-hhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809          309 GDM--AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN  385 (878)
Q Consensus       309 ~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~  385 (878)
                      +.+  ..++++++|++|++++|.+..++. .++++           ++|+.|++.+|.+..           ...+..+.
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----------~~L~~L~l~~n~l~~-----------~~l~~~~~  146 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-----------KTLKELNVAHNLIQS-----------FKLPEYFS  146 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTC-----------TTCCEEECCSSCCCC-----------CCCCGGGG
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccC-----------CCCCEEECcCCccce-----------ecCchhhc
Confidence            865  679999999999999998887765 34443           456667888776651           11356677


Q ss_pred             CCCCCCEEEeecCCCCCCC
Q 048809          386 NLSKLTSLEILIQDEKTLP  404 (878)
Q Consensus       386 ~l~~L~~L~l~~~~~~~~~  404 (878)
                      .+++|+.|++++|....++
T Consensus       147 ~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A          147 NLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             GCTTCCEEECCSSCCCEEC
T ss_pred             cCCCCCEEECCCCCCCcCC
Confidence            8888888888888776654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.58  E-value=2.6e-14  Score=150.00  Aligned_cols=168  Identities=21%  Similarity=0.276  Sum_probs=141.0

Q ss_pred             ccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEcc
Q 048809          225 VLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLD  304 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~  304 (878)
                      .+.++++|+++++.++.++....+++|++|++++|.+..++.  +.++++|++|++++|.+..+|. +..+++|++|+++
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~  120 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE  120 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred             hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence            356789999999999998876689999999999999888887  6999999999999999988765 9999999999999


Q ss_pred             CCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809          305 YCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL  384 (878)
Q Consensus       305 ~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  384 (878)
                      +|.++.++.++.+++|++|++++|.++.+ ..++++           ++|+.|++++|.+.              ....+
T Consensus       121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l-----------~~L~~L~L~~N~l~--------------~~~~l  174 (291)
T 1h6t_A          121 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRL-----------TKLDTLSLEDNQIS--------------DIVPL  174 (291)
T ss_dssp             TSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGC-----------TTCSEEECCSSCCC--------------CCGGG
T ss_pred             CCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccC-----------CCCCEEEccCCccc--------------cchhh
Confidence            99999888899999999999999988887 345544           45677788888765              11227


Q ss_pred             cCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecc
Q 048809          385 NNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGS  422 (878)
Q Consensus       385 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~  422 (878)
                      ..+++|+.|++++|....++. +..+++|+.|++..+.
T Consensus       175 ~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          175 AGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             TTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred             cCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence            888999999999998888764 6688899999987543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.57  E-value=3e-14  Score=150.85  Aligned_cols=170  Identities=21%  Similarity=0.339  Sum_probs=146.4

Q ss_pred             CCCCccccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCC
Q 048809          219 SWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNL  298 (878)
Q Consensus       219 ~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L  298 (878)
                      ..+....+.++++|++++|.+..++....+++|++|++++|.+..++.  |..+++|++|++++|.+..+|. +..+++|
T Consensus        55 ~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L  131 (308)
T 1h6u_A           55 TIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP-LAGLSNL  131 (308)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCCCCCGG-GTTCTTC
T ss_pred             CchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCCCCCCchh-hcCCCCC
Confidence            344445578899999999999998885589999999999998888863  6999999999999999998875 9999999


Q ss_pred             cEEEccCCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCccc---------ccc--cccCCcEEEccCCCCCcc
Q 048809          299 QTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL---------IAP--ILSRLEELYIGESPIEWG  367 (878)
Q Consensus       299 ~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L---------ip~--~l~~L~~L~l~~~~~~~~  367 (878)
                      ++|++++|.++.++.++++++|++|++++|.++.++. ++++++|++|         ++.  .+++|+.|++++|.+.  
T Consensus       132 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~--  208 (308)
T 1h6u_A          132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQIS--  208 (308)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCC--
T ss_pred             CEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccC--
Confidence            9999999999988779999999999999999999887 8999999998         332  7889999999999876  


Q ss_pred             ccccccccccccCcccccCCCCCCEEEeecCCCCCCCcc
Q 048809          368 KVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRD  406 (878)
Q Consensus       368 ~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~  406 (878)
                                  ....+..+++|+.|++++|.....|..
T Consensus       209 ------------~~~~l~~l~~L~~L~l~~N~i~~~~~~  235 (308)
T 1h6u_A          209 ------------DVSPLANTSNLFIVTLTNQTITNQPVF  235 (308)
T ss_dssp             ------------BCGGGTTCTTCCEEEEEEEEEECCCEE
T ss_pred             ------------ccccccCCCCCCEEEccCCeeecCCee
Confidence                        122488999999999999987766643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.57  E-value=2e-14  Score=155.49  Aligned_cols=105  Identities=16%  Similarity=0.227  Sum_probs=86.6

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCC-CCC-ccccCCCCCcE-EEccCC
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLL-ALP-SSLGLLQNLQT-LSLDYC  306 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~-~lp-~~i~~L~~L~~-L~L~~~  306 (878)
                      +.++.++++++++|..+ .+++++|++++|.+..+|.+.|.++++|++|+|++|.+. .+| ..|.++++|++ +.+++|
T Consensus        12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            56788888899998766 468999999999999999888899999999999999984 465 45788888775 566667


Q ss_pred             CCCCc--ccccCcccCcEEEeeCCCcccchH
Q 048809          307 ELGDM--AIIGDLKKLVILALRGSDMKELVG  335 (878)
Q Consensus       307 ~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~  335 (878)
                      .++.+  ..+..+++|++|++++|.++.+|.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred             cccccCchhhhhccccccccccccccccCCc
Confidence            78765  668899999999999998887765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.56  E-value=4.5e-14  Score=146.81  Aligned_cols=171  Identities=22%  Similarity=0.316  Sum_probs=135.1

Q ss_pred             ccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcEEEc
Q 048809          225 VLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQTLSL  303 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L  303 (878)
                      .+++++.+++.++.++.++....+++|++|++++|.+..++  .+..+++|++|++++|.++.+|.. ++.+++|++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            46678999999999888877668899999999999887765  368999999999999999887654 688999999999


Q ss_pred             cCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccccC
Q 048809          304 DYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNAS  380 (878)
Q Consensus       304 ~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  380 (878)
                      ++|.++.+  ..++++++|++|++++|.++.+|.. ++++           ++|+.|++.+|.+.            ...
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-----------~~L~~L~l~~n~l~------------~~~  173 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL-----------TNLTELDLSYNQLQ------------SLP  173 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----------TTCCEEECCSSCCC------------CCC
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC-----------ccCCEEECCCCCcC------------ccC
Confidence            99998865  4478999999999999988887765 3544           45667788887665            223


Q ss_pred             cccccCCCCCCEEEeecCCCCCCCcc-hhcccCCceEEEEe
Q 048809          381 LHELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILI  420 (878)
Q Consensus       381 ~~~L~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~  420 (878)
                      ...++.+++|+.|++++|....++.. +..+++|+.|++..
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence            34467888899999998887777654 45788888888753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.54  E-value=2.9e-14  Score=161.09  Aligned_cols=163  Identities=13%  Similarity=0.212  Sum_probs=123.7

Q ss_pred             cCCCcEEEeeCCCCCCCCC-CC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEc
Q 048809          226 LKDCTAISLNNSNINELPQ-GF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSL  303 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L  303 (878)
                      ++++++|++++|.+..+++ .+ .+++|++|++++|.+..+++  |..+++|++|+|++|.+..+|..    ++|++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEEC
Confidence            4579999999999998874 33 89999999999998877665  79999999999999999877643    89999999


Q ss_pred             cCCCCCCcccccCcccCcEEEeeCCCcccchH-hhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcc
Q 048809          304 DYCELGDMAIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLH  382 (878)
Q Consensus       304 ~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  382 (878)
                      ++|.++.+.. ..+++|++|++++|.++.++. .+++++           +|+.|++++|.+.            ...+.
T Consensus       107 ~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----------~L~~L~Ls~N~l~------------~~~~~  162 (487)
T 3oja_A          107 ANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRS-----------RVQYLDLKLNEID------------TVNFA  162 (487)
T ss_dssp             CSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGS-----------SEEEEECTTSCCC------------EEEGG
T ss_pred             cCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCC-----------CCCEEECCCCCCC------------CcChH
Confidence            9999987622 356899999999999988754 566555           4556677777665            22334


Q ss_pred             ccc-CCCCCCEEEeecCCCCCCCcchhcccCCceEEEE
Q 048809          383 ELN-NLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL  419 (878)
Q Consensus       383 ~L~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~  419 (878)
                      .+. .+++|+.|++++|....+|... .+++|+.|+++
T Consensus       163 ~l~~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls  199 (487)
T 3oja_A          163 ELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLS  199 (487)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECC
T ss_pred             HHhhhCCcccEEecCCCccccccccc-cCCCCCEEECC
Confidence            443 6778888888888766655433 35555555553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.53  E-value=9.4e-14  Score=142.52  Aligned_cols=164  Identities=20%  Similarity=0.367  Sum_probs=136.3

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccc
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSL  292 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i  292 (878)
                      .....|. .++.++++|++++|.+..++.. + .+++|++|++++|.+..++...|..+++|++|+|++|.++.+| ..+
T Consensus        25 ~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  103 (251)
T 3m19_A           25 SLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF  103 (251)
T ss_dssp             CCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             CccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHh
Confidence            3444443 3567899999999999988764 3 7999999999999999999888899999999999999999887 457


Q ss_pred             cCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCcccc
Q 048809          293 GLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKV  369 (878)
Q Consensus       293 ~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~  369 (878)
                      ..+++|++|+|++|.++.+  ..++++.+|++|++++|.++.+|.. ++++.           +|+.|++.+|.+.    
T Consensus       104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------~L~~L~L~~N~l~----  168 (251)
T 3m19_A          104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT-----------NLQTLSLSTNQLQ----  168 (251)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCS----
T ss_pred             cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc-----------CCCEEECCCCcCC----
Confidence            8999999999999999876  4479999999999999999998873 66544           5667799988776    


Q ss_pred             ccccccccccCcccccCCCCCCEEEeecCCCCCC
Q 048809          370 EGVDGERRNASLHELNNLSKLTSLEILIQDEKTL  403 (878)
Q Consensus       370 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~  403 (878)
                              ......+..+++|+.|++++|.....
T Consensus       169 --------~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          169 --------SVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             --------CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             --------ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence                    22345678899999999999986544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.53  E-value=5.5e-14  Score=149.38  Aligned_cols=175  Identities=19%  Similarity=0.262  Sum_probs=135.8

Q ss_pred             cCCCcEEEeeCCCCC-CCCCC---CCCCCccEEEeecCCCCCCCchhhcCC-----CCCcEEEeeCCCCCCCC-ccccCC
Q 048809          226 LKDCTAISLNNSNIN-ELPQG---FECPQLKYFRIHNDHSLKIPDNFFTGM-----TELRVLDFTRMHLLALP-SSLGLL  295 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~-~l~~~---~~~~~Lr~L~l~~~~~~~l~~~~~~~l-----~~Lr~L~Ls~~~i~~lp-~~i~~L  295 (878)
                      ..++++|++++|.++ .+|..   ..+++|++|++++|.+..+|.. |..+     ++|++|++++|.+..+| ..++.+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            567999999999987 46665   3789999999999988888654 5666     89999999999998876 789999


Q ss_pred             CCCcEEEccCCCCCC----cccc--cCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCcccc
Q 048809          296 QNLQTLSLDYCELGD----MAII--GDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKV  369 (878)
Q Consensus       296 ~~L~~L~L~~~~l~~----l~~i--~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~  369 (878)
                      ++|++|++++|.+..    +..+  +++++|++|++++|.++.+|.....+.       ..+++|+.|++++|.+...  
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-------~~l~~L~~L~Ls~N~l~~~--  243 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA-------AARVQLQGLDLSHNSLRDA--  243 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH-------HTTCCCSEEECTTSCCCSS--
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH-------hcCCCCCEEECCCCcCCcc--
Confidence            999999999998652    2344  899999999999998886553211110       0345778889999877611  


Q ss_pred             ccccccccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEec
Q 048809          370 EGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIG  421 (878)
Q Consensus       370 ~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~  421 (878)
                               .....+..+++|+.|++++|....+|.++.  ++|+.|+++.+
T Consensus       244 ---------~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N  284 (312)
T 1wwl_A          244 ---------AGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYN  284 (312)
T ss_dssp             ---------CCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSS
T ss_pred             ---------cchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCC
Confidence                     112445567899999999999999998774  78888888643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.53  E-value=1.5e-13  Score=142.73  Aligned_cols=160  Identities=19%  Similarity=0.305  Sum_probs=134.6

Q ss_pred             CCCCccccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCC
Q 048809          219 SWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQN  297 (878)
Q Consensus       219 ~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~  297 (878)
                      .++....++++++|++++|.+..++....+++|++|++++|.+..++...|..+++|++|++++|.+..+|.. ++.+++
T Consensus        55 ~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  134 (272)
T 3rfs_A           55 SVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN  134 (272)
T ss_dssp             CCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             cccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC
Confidence            3444456789999999999999887555899999999999999999998889999999999999999988755 799999


Q ss_pred             CcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccc
Q 048809          298 LQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDG  374 (878)
Q Consensus       298 L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~  374 (878)
                      |++|++++|.++.+  ..++++++|++|++++|.++.+|.. ++++           ++|+.|++.+|.+.         
T Consensus       135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~---------  194 (272)
T 3rfs_A          135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL-----------TQLKDLRLYQNQLK---------  194 (272)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----------TTCCEEECCSSCCS---------
T ss_pred             CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC-----------ccCCEEECCCCcCC---------
Confidence            99999999998876  4479999999999999999888765 4544           46677799888776         


Q ss_pred             cccccCcccccCCCCCCEEEeecCCCC
Q 048809          375 ERRNASLHELNNLSKLTSLEILIQDEK  401 (878)
Q Consensus       375 ~~~~~~~~~L~~l~~L~~L~l~~~~~~  401 (878)
                         ......+..+++|+.|++++|...
T Consensus       195 ---~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          195 ---SVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             ---CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ---ccCHHHHhCCcCCCEEEccCCCcc
Confidence               223455788999999999998754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.52  E-value=6.7e-14  Score=146.62  Aligned_cols=163  Identities=19%  Similarity=0.233  Sum_probs=135.8

Q ss_pred             cccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEE
Q 048809          224 DVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTL  301 (878)
Q Consensus       224 ~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L  301 (878)
                      .++.++++|++++|.+..++.. + .+++|++|++++|.+..++..  ..+++|++|++++|.+..+|..+..+++|++|
T Consensus        28 ~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L  105 (290)
T 1p9a_G           28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL  105 (290)
T ss_dssp             CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred             CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCEE
Confidence            3567899999999998877543 3 789999999999988888763  78899999999999999999989999999999


Q ss_pred             EccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCccc---------ccc----cccCCcEEEccCCCCC
Q 048809          302 SLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLL---------IAP----ILSRLEELYIGESPIE  365 (878)
Q Consensus       302 ~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L---------ip~----~l~~L~~L~l~~~~~~  365 (878)
                      ++++|.++.+  ..+.++++|++|++++|.++.+|.+ +.++++|++|         +|.    .+++|+.|++.+|.+.
T Consensus       106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            9999998865  5688999999999999988888866 6788888888         443    5789999999999876


Q ss_pred             ccccccccccccccCcccccCCCCCCEEEeecCCCC
Q 048809          366 WGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEK  401 (878)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~  401 (878)
                                   ..+..+....+|+.+++++|...
T Consensus       186 -------------~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          186 -------------TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             -------------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             -------------ccChhhcccccCCeEEeCCCCcc
Confidence                         34456667789999999998754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.51  E-value=9.3e-14  Score=136.65  Aligned_cols=149  Identities=20%  Similarity=0.257  Sum_probs=121.2

Q ss_pred             ccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCC-CCccccCCCCCcEEEc
Q 048809          225 VLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLA-LPSSLGLLQNLQTLSL  303 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i~~L~~L~~L~L  303 (878)
                      .+.++++|+++++.++.++....+++|++|++++|.+..++  .|..+++|++|++++|.+.. .|..++.+++|++|++
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            35679999999999999885558999999999999776665  36899999999999999975 6888999999999999


Q ss_pred             cCCCCCC--cccccCcccCcEEEeeCCC-cccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccC
Q 048809          304 DYCELGD--MAIIGDLKKLVILALRGSD-MKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNAS  380 (878)
Q Consensus       304 ~~~~l~~--l~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  380 (878)
                      ++|.++.  +..++++++|++|++++|. ++.+| .++.+           ++|+.|++.+|.+.              .
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l-----------~~L~~L~l~~n~i~--------------~  173 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTL-----------PELKSLNIQFDGVH--------------D  173 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGC-----------SSCCEEECTTBCCC--------------C
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCC-----------CCCCEEECCCCCCc--------------C
Confidence            9999886  4889999999999999996 88876 45544           45667788887665              1


Q ss_pred             cccccCCCCCCEEEeecCCCC
Q 048809          381 LHELNNLSKLTSLEILIQDEK  401 (878)
Q Consensus       381 ~~~L~~l~~L~~L~l~~~~~~  401 (878)
                      +..+..+++|+.|++++|.+.
T Consensus       174 ~~~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          174 YRGIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CTTGGGCSSCCEEEECBC---
T ss_pred             hHHhccCCCCCEEEeeCcccC
Confidence            236778889999999988754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.50  E-value=2.2e-13  Score=137.42  Aligned_cols=150  Identities=21%  Similarity=0.300  Sum_probs=124.2

Q ss_pred             CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcEEEccCCC
Q 048809          229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQTLSLDYCE  307 (878)
Q Consensus       229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~  307 (878)
                      .+.++.+++.+..+|..+. ++|++|++++|.+..++...|..+++|++|+|++|.+..+|.. +..+++|++|+|++|.
T Consensus        21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            3568888888999987664 8999999999999988777789999999999999999988755 6899999999999999


Q ss_pred             CCCc--ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809          308 LGDM--AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN  385 (878)
Q Consensus       308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~  385 (878)
                      ++.+  ..+..+.+|++|++++|.++.+|..+.++.           +|+.|++.+|.+.            ......+.
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~-----------~L~~L~L~~N~l~------------~~~~~~~~  156 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLT-----------HLTHLALDQNQLK------------SIPHGAFD  156 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCT-----------TCSEEECCSSCCC------------CCCTTTTT
T ss_pred             CCccChhHhCcchhhCeEeccCCcccccCcccccCC-----------CCCEEECCCCcCC------------ccCHHHHh
Confidence            8876  447899999999999999999998876554           5566788888765            12235577


Q ss_pred             CCCCCCEEEeecCCCCC
Q 048809          386 NLSKLTSLEILIQDEKT  402 (878)
Q Consensus       386 ~l~~L~~L~l~~~~~~~  402 (878)
                      .+++|+.|++++|....
T Consensus       157 ~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          157 RLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             TCTTCCEEECTTSCBCT
T ss_pred             CCCCCCEEEeeCCCccC
Confidence            88899999999887554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.49  E-value=2e-13  Score=136.74  Aligned_cols=147  Identities=16%  Similarity=0.299  Sum_probs=115.7

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCCC
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCEL  308 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~l  308 (878)
                      +.++++++.++.+|..+. ++|++|++++|.+..++...|..+++|++|+|++|.+..+ |..|..+++|++|+|++|.+
T Consensus        14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            567888888888887654 6899999999988888887788999999999999999876 77889999999999999998


Q ss_pred             CCc--ccccCcccCcEEEeeCCCcccchH-hhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809          309 GDM--AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN  385 (878)
Q Consensus       309 ~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~  385 (878)
                      +.+  ..+.++.+|++|++++|.++.++. .++.+.           +|+.|++.+|.+.            ......+.
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----------~L~~L~L~~N~l~------------~~~~~~~~  149 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH-----------NLNLLSLYDNKLQ------------TIAKGTFS  149 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCS------------CCCTTTTT
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC-----------CCCEEECCCCcCC------------EECHHHHh
Confidence            876  447889999999999998887753 355443           5566688777665            12234566


Q ss_pred             CCCCCCEEEeecCCC
Q 048809          386 NLSKLTSLEILIQDE  400 (878)
Q Consensus       386 ~l~~L~~L~l~~~~~  400 (878)
                      .+++|+.|++++|..
T Consensus       150 ~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          150 PLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TCTTCCEEECCSSCE
T ss_pred             CCCCCCEEEeCCCCc
Confidence            778888888887764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.49  E-value=4.6e-13  Score=144.73  Aligned_cols=200  Identities=15%  Similarity=0.145  Sum_probs=101.5

Q ss_pred             ccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccccceeeeccc
Q 048809          603 LTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVEN  681 (878)
Q Consensus       603 ~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~  681 (878)
                      +++|++|+|+++..++.++.+ ....+++|.++.+.++++++ ++...+..    +++|+.|++++|..           
T Consensus        53 l~~L~~L~Ls~N~i~~~i~~~-~f~~L~~l~~~l~~~~N~l~~l~~~~f~~----l~~L~~L~l~~n~l-----------  116 (350)
T 4ay9_X           53 FGDLEKIEISQNDVLEVIEAD-VFSNLPKLHEIRIEKANNLLYINPEAFQN----LPNLQYLLISNTGI-----------  116 (350)
T ss_dssp             CTTCCEEEEECCTTCCEECTT-SBCSCTTCCEEEEEEETTCCEECTTSBCC----CTTCCEEEEEEECC-----------
T ss_pred             CCCCCEEECcCCCCCCccChh-HhhcchhhhhhhcccCCcccccCchhhhh----cccccccccccccc-----------
Confidence            555555555555444444432 23345555655555556666 55555555    66666666666653           


Q ss_pred             cccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccCc-cccc-CCCcEEEecccCCceEeechhhhhhhcc
Q 048809          682 GVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVPS-STSF-QNLTTVAVDFCYGMINILTSSTAKSLVR  759 (878)
Q Consensus       682 ~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l-~~L~~L~i~~c~~l~~l~~~~~~~~l~~  759 (878)
                               ...+      ...+.....+..|++.++..+..++.. +..+ ..++.|++++ ++++.++.. .+ ..++
T Consensus       117 ---------~~~~------~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~-~f-~~~~  178 (350)
T 4ay9_X          117 ---------KHLP------DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS-AF-NGTQ  178 (350)
T ss_dssp             ---------SSCC------CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT-SS-TTEE
T ss_pred             ---------ccCC------chhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh-hc-cccc
Confidence                     1111      111122334555555555555554432 1222 2455566555 455555322 21 2345


Q ss_pred             ceEEEEccccccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCCCCcccccC
Q 048809          760 LKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDCPNMSIFSG  839 (878)
Q Consensus       760 L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C~~L~~lp~  839 (878)
                      |++|.+++++.++.++...           ...+++|+.|+++++ +++++|.+     .+.+|+.|.+.+|.+++.+|.
T Consensus       179 L~~l~l~~~n~l~~i~~~~-----------f~~l~~L~~LdLs~N-~l~~lp~~-----~~~~L~~L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          179 LDELNLSDNNNLEELPNDV-----------FHGASGPVILDISRT-RIHSLPSY-----GLENLKKLRARSTYNLKKLPT  241 (350)
T ss_dssp             EEEEECTTCTTCCCCCTTT-----------TTTEECCSEEECTTS-CCCCCCSS-----SCTTCCEEECTTCTTCCCCCC
T ss_pred             hhHHhhccCCcccCCCHHH-----------hccCcccchhhcCCC-CcCccChh-----hhccchHhhhccCCCcCcCCC
Confidence            6666666556666555421           123556666666554 46666544     355566666666666666663


Q ss_pred             CCccCCCcceeeccc
Q 048809          840 GELSTPNLRKVQLKQ  854 (878)
Q Consensus       840 ~~~~~~~L~~l~i~~  854 (878)
                       ...+++|+.+.+.+
T Consensus       242 -l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          242 -LEKLVALMEASLTY  255 (350)
T ss_dssp             -TTTCCSCCEEECSC
T ss_pred             -chhCcChhhCcCCC
Confidence             23455666665544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.48  E-value=1.6e-13  Score=157.88  Aligned_cols=166  Identities=23%  Similarity=0.293  Sum_probs=120.4

Q ss_pred             ccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEcc
Q 048809          225 VLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLD  304 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~  304 (878)
                      .+..++.|+++++.+..++....+++|++|++++|.+..++.  |..+++|++|+|++|.+..+| .+..+++|++|+|+
T Consensus        41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE  117 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred             cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence            356678888888888888765578888888888888887776  688888888888888888776 68888888888888


Q ss_pred             CCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809          305 YCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL  384 (878)
Q Consensus       305 ~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  384 (878)
                      +|.++.++.++.+++|+.|+|++|.++.+ ..++.+.           +|+.|++++|.+.            .  ...+
T Consensus       118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~-----------~L~~L~Ls~N~l~------------~--~~~l  171 (605)
T 1m9s_A          118 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLT-----------KLDTLSLEDNQIS------------D--IVPL  171 (605)
T ss_dssp             TSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCT-----------TCSEEECCSSCCC------------C--CGGG
T ss_pred             CCCCCCCccccCCCccCEEECCCCccCCc-hhhcccC-----------CCCEEECcCCcCC------------C--chhh
Confidence            88888887788888888888888887776 3455444           4455566666554            0  1115


Q ss_pred             cCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEe
Q 048809          385 NNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI  420 (878)
Q Consensus       385 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~  420 (878)
                      ..+++|+.|++++|.+..+| .+..+++|+.|++..
T Consensus       172 ~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          172 AGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS  206 (605)
T ss_dssp             TTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCS
T ss_pred             ccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccC
Confidence            66666777777766666554 344666666666653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.47  E-value=2.8e-13  Score=135.54  Aligned_cols=148  Identities=16%  Similarity=0.291  Sum_probs=118.3

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCC-CchhhcCCCCCcEEEeeCCCCCCCCc-cccCCCCCcEEEccCCC
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKI-PDNFFTGMTELRVLDFTRMHLLALPS-SLGLLQNLQTLSLDYCE  307 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l-~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~  307 (878)
                      +.++++++.++.+|..+ .+.+++|++++|.+..+ +.++|..+++|++|+|++|.++.++. .|..+++|++|+|++|.
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            58899999999988765 35678999999988887 45667999999999999999988765 78999999999999999


Q ss_pred             CCCc--ccccCcccCcEEEeeCCCcccch-HhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809          308 LGDM--AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL  384 (878)
Q Consensus       308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  384 (878)
                      ++.+  ..++++++|++|++++|.++.++ ..++.+.           +|+.|++.+|.+.            ...+..+
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------~L~~L~L~~N~l~------------~~~~~~~  149 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS-----------SVRLLSLYDNQIT------------TVAPGAF  149 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT-----------TCSEEECTTSCCC------------CBCTTTT
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc-----------cCCEEECCCCcCC------------EECHHHh
Confidence            8876  45899999999999999888874 4455443           5566788888765            2334667


Q ss_pred             cCCCCCCEEEeecCCCC
Q 048809          385 NNLSKLTSLEILIQDEK  401 (878)
Q Consensus       385 ~~l~~L~~L~l~~~~~~  401 (878)
                      ..+++|+.|++++|...
T Consensus       150 ~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          150 DTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTCTTCCEEECCSCCEE
T ss_pred             cCCCCCCEEEecCcCCc
Confidence            78888888988888643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.47  E-value=4.8e-13  Score=140.24  Aligned_cols=158  Identities=21%  Similarity=0.376  Sum_probs=134.9

Q ss_pred             CCCCccccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCC
Q 048809          219 SWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNL  298 (878)
Q Consensus       219 ~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L  298 (878)
                      ..+......++++|++++|.++.++....+++|++|++++|.+..++.  +..+++|++|++++|.+..+ +.+..+++|
T Consensus        60 ~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L  136 (291)
T 1h6t_A           60 SVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI-NGLVHLPQL  136 (291)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCC-GGGGGCTTC
T ss_pred             cChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCCCC-hhhcCCCCC
Confidence            334445578899999999999998875589999999999999888875  69999999999999999887 468999999


Q ss_pred             cEEEccCCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccc
Q 048809          299 QTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRN  378 (878)
Q Consensus       299 ~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  378 (878)
                      ++|++++|.++.++.++++++|++|++++|.++.++. ++.+           ++|+.|++++|.+.             
T Consensus       137 ~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l-----------~~L~~L~L~~N~i~-------------  191 (291)
T 1h6t_A          137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGL-----------TKLQNLYLSKNHIS-------------  191 (291)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTC-----------TTCCEEECCSSCCC-------------
T ss_pred             CEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCC-----------CccCEEECCCCcCC-------------
Confidence            9999999999988899999999999999999988876 5544           46677799988775             


Q ss_pred             cCcccccCCCCCCEEEeecCCCCCCCc
Q 048809          379 ASLHELNNLSKLTSLEILIQDEKTLPR  405 (878)
Q Consensus       379 ~~~~~L~~l~~L~~L~l~~~~~~~~~~  405 (878)
                       .+..+..+++|+.|++++|.....|.
T Consensus       192 -~l~~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          192 -DLRALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             -BCGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred             -CChhhccCCCCCEEECcCCcccCCcc
Confidence             13458899999999999998666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.47  E-value=3.2e-13  Score=139.22  Aligned_cols=151  Identities=27%  Similarity=0.309  Sum_probs=123.3

Q ss_pred             ccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEcc
Q 048809          225 VLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLD  304 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~  304 (878)
                      .+.++++|++++|.++.++....+++|++|++++|.+..++.  |..+++|++|++++|.++.+|....  .+|++|+++
T Consensus        39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~  114 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLD  114 (263)
T ss_dssp             HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECC
T ss_pred             hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEcc
Confidence            456789999999999988855588999999999998888887  6899999999999999988876444  899999999


Q ss_pred             CCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809          305 YCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL  384 (878)
Q Consensus       305 ~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  384 (878)
                      +|.++.++.++++++|++|++++|.++.+| .++.+           ++|+.|++++|.+.              ....+
T Consensus       115 ~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l-----------~~L~~L~L~~N~i~--------------~~~~l  168 (263)
T 1xeu_A          115 NNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFL-----------SKLEVLDLHGNEIT--------------NTGGL  168 (263)
T ss_dssp             SSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGC-----------TTCCEEECTTSCCC--------------BCTTS
T ss_pred             CCccCCChhhcCcccccEEECCCCcCCCCh-HHccC-----------CCCCEEECCCCcCc--------------chHHh
Confidence            999988888999999999999999888876 45543           45667788888765              11567


Q ss_pred             cCCCCCCEEEeecCCCCCCCc
Q 048809          385 NNLSKLTSLEILIQDEKTLPR  405 (878)
Q Consensus       385 ~~l~~L~~L~l~~~~~~~~~~  405 (878)
                      ..+++|+.|++++|.....|.
T Consensus       169 ~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          169 TRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             TTCCCCCEEEEEEEEEECCCE
T ss_pred             ccCCCCCEEeCCCCcccCCcc
Confidence            788899999999887665553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.46  E-value=1.5e-13  Score=145.96  Aligned_cols=83  Identities=16%  Similarity=0.186  Sum_probs=49.2

Q ss_pred             CCCccEEEeecCCCC-CCCchhh-cCCCCCcEEEeeCCCCCCCCccccCC-----CCCcEEEccCCCCCCc--ccccCcc
Q 048809          248 CPQLKYFRIHNDHSL-KIPDNFF-TGMTELRVLDFTRMHLLALPSSLGLL-----QNLQTLSLDYCELGDM--AIIGDLK  318 (878)
Q Consensus       248 ~~~Lr~L~l~~~~~~-~l~~~~~-~~l~~Lr~L~Ls~~~i~~lp~~i~~L-----~~L~~L~L~~~~l~~l--~~i~~L~  318 (878)
                      +++|++|++++|.+. .+|..+| ..+++|++|+|++|.+..+|..++.+     ++|++|++++|.++.+  ..+++++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            556666666666554 4454433 56666666666666665555555554     5666666666665543  4566666


Q ss_pred             cCcEEEeeCCCc
Q 048809          319 KLVILALRGSDM  330 (878)
Q Consensus       319 ~L~~L~l~~~~l  330 (878)
                      +|++|++++|.+
T Consensus       174 ~L~~L~Ls~N~l  185 (312)
T 1wwl_A          174 ALSTLDLSDNPE  185 (312)
T ss_dssp             SCCEEECCSCTT
T ss_pred             CCCEEECCCCCc
Confidence            666666666654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.45  E-value=1.9e-13  Score=135.86  Aligned_cols=158  Identities=19%  Similarity=0.363  Sum_probs=128.0

Q ss_pred             cccCCCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcE
Q 048809          224 DVLKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQT  300 (878)
Q Consensus       224 ~~~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~  300 (878)
                      ..+.++++|++++|.++.++...  .+++|++|++++|.+..++...|..+++|++|++++|.++.+|.. +..+++|++
T Consensus        25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  104 (208)
T 2o6s_A           25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE  104 (208)
T ss_dssp             CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence            35678999999999999888754  789999999999999999988889999999999999999988765 689999999


Q ss_pred             EEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCcccccccccccc
Q 048809          301 LSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERR  377 (878)
Q Consensus       301 L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  377 (878)
                      |++++|.++.+  ..++++++|++|++++|.++.+|.. ++++           ++|+.|++.+|.+.            
T Consensus       105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-----------~~L~~L~l~~N~~~------------  161 (208)
T 2o6s_A          105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL-----------TSLQYIWLHDNPWD------------  161 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-----------TTCCEEECCSCCBC------------
T ss_pred             EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC-----------CCccEEEecCCCee------------
Confidence            99999998876  4488999999999999999888765 4544           45667788877543            


Q ss_pred             ccCcccccCCCCCCEEEeecCCC-CCCCcchhccc
Q 048809          378 NASLHELNNLSKLTSLEILIQDE-KTLPRDLSFFK  411 (878)
Q Consensus       378 ~~~~~~L~~l~~L~~L~l~~~~~-~~~~~~~~~l~  411 (878)
                             +.+++|+.|+++.+.. +.+|.+++.++
T Consensus       162 -------~~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          162 -------CTCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             -------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             -------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence                   3456788888877653 46677665443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.45  E-value=2.7e-13  Score=143.93  Aligned_cols=175  Identities=17%  Similarity=0.139  Sum_probs=123.1

Q ss_pred             CCCcEEEeeCCCCCC-CCCC---CCCCCccEEEeecCCCCCC----CchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCC
Q 048809          227 KDCTAISLNNSNINE-LPQG---FECPQLKYFRIHNDHSLKI----PDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQN  297 (878)
Q Consensus       227 ~~lr~l~l~~~~~~~-l~~~---~~~~~Lr~L~l~~~~~~~l----~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~  297 (878)
                      .++++|++++|.+.. .|..   ..+++|++|++++|.+...    +...+..+++|++|+|++|.+..+| ..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            348888888888765 3333   4578889999988866642    1223457888999999999887664 67788889


Q ss_pred             CcEEEccCCCCCC---c---ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCcccccc
Q 048809          298 LQTLSLDYCELGD---M---AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEG  371 (878)
Q Consensus       298 L~~L~L~~~~l~~---l---~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~  371 (878)
                      |++|+|++|.+..   +   ..++++++|++|++++|.++.+|.....+.       ..+++|+.|++++|.+.      
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~-------~~l~~L~~L~Ls~N~l~------  237 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA-------AAGVQPHSLDLSHNSLR------  237 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH-------HHTCCCSSEECTTSCCC------
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH-------hcCCCCCEEECCCCCCC------
Confidence            9999999988642   2   234688889999999888877665321110       03356677799888776      


Q ss_pred             ccccccccCcccccC---CCCCCEEEeecCCCCCCCcchhcccCCceEEEEecc
Q 048809          372 VDGERRNASLHELNN---LSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGS  422 (878)
Q Consensus       372 ~~~~~~~~~~~~L~~---l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~  422 (878)
                            ...+..+..   +++|++|++++|....+|..+  .++|+.|+++.+.
T Consensus       238 ------~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~  283 (310)
T 4glp_A          238 ------ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNR  283 (310)
T ss_dssp             ------CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCC
T ss_pred             ------ccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCc
Confidence                  112233333   479999999999988888876  3789998886443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.45  E-value=1.4e-13  Score=141.85  Aligned_cols=166  Identities=20%  Similarity=0.239  Sum_probs=137.6

Q ss_pred             cCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809          226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY  305 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~  305 (878)
                      +.++..+.+..+.++.++....+++|++|++++|.+..++ . +..+++|++|++++|.+..+|. +..+++|++|++++
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence            3345566677778887775558899999999999999998 3 6899999999999999999987 99999999999999


Q ss_pred             CCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809          306 CELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN  385 (878)
Q Consensus       306 ~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~  385 (878)
                      |.++.++.+.. .+|++|++++|.++.+|. ++++           ++|+.|++++|.+.              .+..+.
T Consensus        95 N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~-l~~l-----------~~L~~L~Ls~N~i~--------------~~~~l~  147 (263)
T 1xeu_A           95 NRLKNLNGIPS-ACLSRLFLDNNELRDTDS-LIHL-----------KNLEILSIRNNKLK--------------SIVMLG  147 (263)
T ss_dssp             SCCSCCTTCCC-SSCCEEECCSSCCSBSGG-GTTC-----------TTCCEEECTTSCCC--------------BCGGGG
T ss_pred             CccCCcCcccc-CcccEEEccCCccCCChh-hcCc-----------ccccEEECCCCcCC--------------CChHHc
Confidence            99998865666 999999999999988763 5544           46677799988776              124688


Q ss_pred             CCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecc
Q 048809          386 NLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGS  422 (878)
Q Consensus       386 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~  422 (878)
                      .+++|+.|++++|....+ ..+..+++|+.|+++.+.
T Consensus       148 ~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          148 FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred             cCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence            899999999999998877 556688999999997543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.44  E-value=4.1e-14  Score=152.41  Aligned_cols=100  Identities=20%  Similarity=0.236  Sum_probs=55.9

Q ss_pred             CcEEEeeCCCCCCCCCCC-CC--CCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCC--CCccccCCCCCcEEEc
Q 048809          229 CTAISLNNSNINELPQGF-EC--PQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLA--LPSSLGLLQNLQTLSL  303 (878)
Q Consensus       229 lr~l~l~~~~~~~l~~~~-~~--~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~--lp~~i~~L~~L~~L~L  303 (878)
                      .++++++++.+.  +..+ .+  +++++|++.+|.+...+..+ ..+++|++|++++|.+..  +|..+..+++|++|++
T Consensus        49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            567777766544  1111 22  56666666666544444443 356666666666666542  5555566666666666


Q ss_pred             cCCCCCC--cccccCcccCcEEEeeCC-Ccc
Q 048809          304 DYCELGD--MAIIGDLKKLVILALRGS-DMK  331 (878)
Q Consensus       304 ~~~~l~~--l~~i~~L~~L~~L~l~~~-~l~  331 (878)
                      ++|.++.  +..++++++|++|++++| .++
T Consensus       126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~  156 (336)
T 2ast_B          126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS  156 (336)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred             cCcccCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            6666542  245555666666666665 444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.43  E-value=2.5e-12  Score=127.74  Aligned_cols=148  Identities=20%  Similarity=0.328  Sum_probs=122.7

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcEEEccCCCC
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQTLSLDYCEL  308 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~l  308 (878)
                      +.++..++.+..+|..+ .++|++|++++|.+..++..+|..+++|++|++++|.++.+|.. +..+++|++|++++|.+
T Consensus        10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            56788888888888665 46999999999999999998889999999999999999988765 68999999999999998


Q ss_pred             CCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809          309 GDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN  385 (878)
Q Consensus       309 ~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~  385 (878)
                      +.+  ..++++++|++|++++|.++.+|.. ++++           ++|+.|++.+|.+.            ......+.
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----------~~L~~L~l~~N~l~------------~~~~~~~~  145 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL-----------TQLKDLRLYQNQLK------------SVPDGVFD  145 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----------TTCCEEECCSSCCS------------CCCTTTTT
T ss_pred             CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccC-----------CcCCEEECCCCccc------------eeCHHHhc
Confidence            876  4579999999999999999888765 4544           45667788888765            12234477


Q ss_pred             CCCCCCEEEeecCCCC
Q 048809          386 NLSKLTSLEILIQDEK  401 (878)
Q Consensus       386 ~l~~L~~L~l~~~~~~  401 (878)
                      .+++|+.|++++|...
T Consensus       146 ~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          146 RLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             TCTTCCEEECCSCCBC
T ss_pred             cCCCccEEEecCCCee
Confidence            8899999999988643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.42  E-value=1.2e-12  Score=128.71  Aligned_cols=145  Identities=17%  Similarity=0.276  Sum_probs=123.3

Q ss_pred             CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCC--cccccCcccCcEEE
Q 048809          247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGD--MAIIGDLKKLVILA  324 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--l~~i~~L~~L~~L~  324 (878)
                      ++++|++|++++|.+..+| . +..+++|++|++++|.+..++ .+..+++|++|++++|.++.  +..++++++|++|+
T Consensus        42 ~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hcCCccEEeccCCCccChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            5789999999999999988 3 699999999999999887765 78999999999999999885  58899999999999


Q ss_pred             eeCCCccc-chHhhcccccCcccccccccCCcEEEccCCC-CCccccccccccccccCcccccCCCCCCEEEeecCCCCC
Q 048809          325 LRGSDMKE-LVGEIGQLTQLRLLIAPILSRLEELYIGESP-IEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKT  402 (878)
Q Consensus       325 l~~~~l~~-lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~  402 (878)
                      +++|.++. .|..+++++           +|+.|++.+|. +.              .+..+..+++|+.|++++|....
T Consensus       119 Ls~n~i~~~~~~~l~~l~-----------~L~~L~L~~n~~i~--------------~~~~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLP-----------KVNSIDLSYNGAIT--------------DIMPLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCS-----------SCCEEECCSCTBCC--------------CCGGGGGCSSCCEEECTTBCCCC
T ss_pred             ecCCccCcHhHHHHhhCC-----------CCCEEEccCCCCcc--------------ccHhhcCCCCCCEEECCCCCCcC
Confidence            99998875 566677555           56677888886 43              12468889999999999999888


Q ss_pred             CCcchhcccCCceEEEEe
Q 048809          403 LPRDLSFFKMLQRYRILI  420 (878)
Q Consensus       403 ~~~~~~~l~~L~~L~l~~  420 (878)
                      ++ .+..+++|+.|++..
T Consensus       174 ~~-~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          174 YR-GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CT-TGGGCSSCCEEEECB
T ss_pred             hH-HhccCCCCCEEEeeC
Confidence            77 666899999999863

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.42  E-value=4.6e-13  Score=154.14  Aligned_cols=185  Identities=22%  Similarity=0.255  Sum_probs=147.5

Q ss_pred             EEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCc
Q 048809          232 ISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM  311 (878)
Q Consensus       232 l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l  311 (878)
                      +.+..+.+..+.....+++|+.|++++|.+..++.  |..+++|++|+|++|.+..+|. +..+++|++|+|++|.++.+
T Consensus        26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l  102 (605)
T 1m9s_A           26 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL  102 (605)
T ss_dssp             HHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred             HhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC
Confidence            33444445544444478899999999999988874  6999999999999999999887 99999999999999999999


Q ss_pred             ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCC
Q 048809          312 AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLT  391 (878)
Q Consensus       312 ~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~  391 (878)
                      +.++.+++|++|+|++|.+..+|. ++.           +++|+.|++++|.+.              .+..+..+++|+
T Consensus       103 ~~l~~l~~L~~L~Ls~N~l~~l~~-l~~-----------l~~L~~L~Ls~N~l~--------------~l~~l~~l~~L~  156 (605)
T 1m9s_A          103 SSLKDLKKLKSLSLEHNGISDING-LVH-----------LPQLESLYLGNNKIT--------------DITVLSRLTKLD  156 (605)
T ss_dssp             TTSTTCTTCCEEECTTSCCCCCGG-GGG-----------CTTCSEEECCSSCCC--------------CCGGGGSCTTCS
T ss_pred             hhhccCCCCCEEEecCCCCCCCcc-ccC-----------CCccCEEECCCCccC--------------CchhhcccCCCC
Confidence            899999999999999999888653 544           346677899988775              236788999999


Q ss_pred             EEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCcCCc
Q 048809          392 SLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGSLDM  471 (878)
Q Consensus       392 ~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~  471 (878)
                      .|++++|.+..++. +..+++|+.|+++.+.....                        + ....+++|+.|+++++...
T Consensus       157 ~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l------------------------~-~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          157 TLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL------------------------R-ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC------------------------G-GGTTCTTCSEEECCSEEEE
T ss_pred             EEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC------------------------h-HHccCCCCCEEEccCCcCc
Confidence            99999999888776 77899999999864432111                        0 1234788999999877543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.41  E-value=2.2e-12  Score=146.73  Aligned_cols=158  Identities=16%  Similarity=0.178  Sum_probs=117.6

Q ss_pred             ccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEcc
Q 048809          225 VLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLD  304 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~  304 (878)
                      +.++++.|++++|.++.+|  ..+++|++|++++|.+..+|.  |..  +|++|+|++|.++.+|.   .+++|++|+++
T Consensus        78 l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls  148 (571)
T 3cvr_A           78 LPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTMLPE---LPALLEYINAD  148 (571)
T ss_dssp             CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred             HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCCCC---cCccccEEeCC
Confidence            3567888888888888777  346788888888887777776  344  78888888888877777   57788888888


Q ss_pred             CCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809          305 YCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL  384 (878)
Q Consensus       305 ~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  384 (878)
                      +|.++.++.  .+++|++|++++|.++.+|. ++             ++|+.|++++|.+..             .+. +
T Consensus       149 ~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~-------------~~L~~L~Ls~N~L~~-------------lp~-~  198 (571)
T 3cvr_A          149 NNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP-------------ESLEALDVSTNLLES-------------LPA-V  198 (571)
T ss_dssp             SSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC-------------TTCCEEECCSSCCSS-------------CCC-C
T ss_pred             CCccCcCCC--cCCCcCEEECCCCCCCCcch-hh-------------CCCCEEECcCCCCCc-------------hhh-H
Confidence            888776644  56788888888887777776 43             367888999987761             111 2


Q ss_pred             cC-----CCCCCEEEeecCCCCCCCcchhcccCCceEEEEec
Q 048809          385 NN-----LSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIG  421 (878)
Q Consensus       385 ~~-----l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~  421 (878)
                      ..     ...|+.|++++|.+..+|.++..+++|+.|+++.+
T Consensus       199 ~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          199 PVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             C--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSS
T ss_pred             HHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCC
Confidence            22     22339999999999999998889999999998643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.40  E-value=2.4e-12  Score=129.70  Aligned_cols=138  Identities=26%  Similarity=0.385  Sum_probs=117.6

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-c
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-L  292 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i  292 (878)
                      .....|. .++.++++|++++|.++.++.. + .+++|++|++++|.+..+|...|..+++|++|+|++|.++.+|.. +
T Consensus        30 ~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  108 (229)
T 3e6j_A           30 RHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF  108 (229)
T ss_dssp             CCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHh
Confidence            3344443 4568899999999999988543 3 899999999999999999998899999999999999999998765 6


Q ss_pred             cCCCCCcEEEccCCCCCCc-ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCC
Q 048809          293 GLLQNLQTLSLDYCELGDM-AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIE  365 (878)
Q Consensus       293 ~~L~~L~~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~  365 (878)
                      ..+++|++|+|++|.++.+ ..+.++.+|++|++++|.++.+|.. +..+           ++|+.|++.+|.+.
T Consensus       109 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----------~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          109 DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL-----------SSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC-----------TTCCEEECTTSCBC
T ss_pred             CcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCC-----------CCCCEEEeeCCCcc
Confidence            8999999999999999887 7899999999999999999988864 5544           45677789888765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.39  E-value=4e-13  Score=144.59  Aligned_cols=174  Identities=13%  Similarity=0.168  Sum_probs=120.7

Q ss_pred             CCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCC--CCchhhcCCCCCcEEEeeCCCCC-CCCccccCCCCCcEEE
Q 048809          227 KDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLK--IPDNFFTGMTELRVLDFTRMHLL-ALPSSLGLLQNLQTLS  302 (878)
Q Consensus       227 ~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~--l~~~~~~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~  302 (878)
                      .+++++++.++.+...+... .+++|++|++++|.+..  ++ .++..+++|++|++++|.+. ..|..++.+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHH-HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHH-HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            56888888888877654444 78999999999986553  44 34689999999999999886 5678888999999999


Q ss_pred             ccCC-CCCC--c-ccccCcccCcEEEeeCC-Cccc--chHhhcccccCcccccccccCCcEEEccCCCCCcccccccccc
Q 048809          303 LDYC-ELGD--M-AIIGDLKKLVILALRGS-DMKE--LVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGE  375 (878)
Q Consensus       303 L~~~-~l~~--l-~~i~~L~~L~~L~l~~~-~l~~--lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~  375 (878)
                      +++| .++.  + ..+.++++|++|++++| .++.  ++..+++++          .+|+.|++.+|.....        
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~----------~~L~~L~l~~~~~~~~--------  210 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS----------ETITQLNLSGYRKNLQ--------  210 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC----------TTCCEEECCSCGGGSC--------
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc----------cCCCEEEeCCCcccCC--------
Confidence            9999 5774  4 55888999999999999 8875  566566554          0445556666521100        


Q ss_pred             ccccCcccccCCCCCCEEEeecCCC--CCCCcchhcccCCceEEEEe
Q 048809          376 RRNASLHELNNLSKLTSLEILIQDE--KTLPRDLSFFKMLQRYRILI  420 (878)
Q Consensus       376 ~~~~~~~~L~~l~~L~~L~l~~~~~--~~~~~~~~~l~~L~~L~l~~  420 (878)
                       ....+..+..+++|+.|+++++..  ...+..+..+++|+.|++..
T Consensus       211 -~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~  256 (336)
T 2ast_B          211 -KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR  256 (336)
T ss_dssp             -HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             -HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence             011233445666777777776662  23344555667777776643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.38  E-value=5.1e-13  Score=141.76  Aligned_cols=172  Identities=16%  Similarity=0.091  Sum_probs=136.4

Q ss_pred             cccCCCcEEEeeCCCCCCCCCC------CCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCC---CC--ccc
Q 048809          224 DVLKDCTAISLNNSNINELPQG------FECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLA---LP--SSL  292 (878)
Q Consensus       224 ~~~~~lr~l~l~~~~~~~l~~~------~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~---lp--~~i  292 (878)
                      ....++++|++++|.+......      ..+++|++|++++|.+..++...|+.+++|++|+|++|.+..   ++  ..+
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  193 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP  193 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence            3467899999999998863321      158999999999999999988778999999999999999753   43  334


Q ss_pred             cCCCCCcEEEccCCCCCCccc-----ccCcccCcEEEeeCCCcccc-hHhhcccccCcccccccccCCcEEEccCCCCCc
Q 048809          293 GLLQNLQTLSLDYCELGDMAI-----IGDLKKLVILALRGSDMKEL-VGEIGQLTQLRLLIAPILSRLEELYIGESPIEW  366 (878)
Q Consensus       293 ~~L~~L~~L~L~~~~l~~l~~-----i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~  366 (878)
                      +.+++|++|++++|.++.++.     ++++++|++|++++|.++.+ |..++.+.        .+++|+.|++++|.+. 
T Consensus       194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~--------~~~~L~~L~Ls~N~l~-  264 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM--------WSSALNSLNLSFAGLE-  264 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC--------CCTTCCCEECCSSCCC-
T ss_pred             hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc--------CcCcCCEEECCCCCCC-
Confidence            789999999999999987632     57889999999999999886 77776654        2346788899888776 


Q ss_pred             cccccccccccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEE
Q 048809          367 GKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL  419 (878)
Q Consensus       367 ~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~  419 (878)
                                  ..+..+.  ++|+.|++++|....+|. ...+++|+.|+++
T Consensus       265 ------------~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~  302 (310)
T 4glp_A          265 ------------QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLD  302 (310)
T ss_dssp             ------------SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECS
T ss_pred             ------------chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECc
Confidence                        1223332  689999999999888765 4578888888874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.36  E-value=2.4e-12  Score=128.79  Aligned_cols=137  Identities=23%  Similarity=0.401  Sum_probs=116.2

Q ss_pred             CCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-cc
Q 048809          217 LTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LG  293 (878)
Q Consensus       217 ~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~  293 (878)
                      ....|. .++.+++.|++++|.++.++.. + .+++|++|++++|.+..++.+.|..+++|++|+|++|.++.+|.. +.
T Consensus        23 l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~  101 (220)
T 2v9t_B           23 LTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE  101 (220)
T ss_dssp             CSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTT
T ss_pred             cCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHcc
Confidence            344443 4567899999999999998863 3 789999999999999998777789999999999999999999876 58


Q ss_pred             CCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCC
Q 048809          294 LLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIE  365 (878)
Q Consensus       294 ~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~  365 (878)
                      .+++|++|+|++|.++.+  ..+..+.+|++|++++|.++.+|.+ +..+           ++|+.|++.+|.+.
T Consensus       102 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----------~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL-----------RAIQTMHLAQNPFI  165 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-----------TTCCEEECCSSCEE
T ss_pred             CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC-----------CCCCEEEeCCCCcC
Confidence            999999999999999875  6799999999999999999988864 5544           45677788888665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.35  E-value=1.4e-12  Score=141.59  Aligned_cols=169  Identities=19%  Similarity=0.286  Sum_probs=123.1

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhc-CCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCC
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFT-GMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCE  307 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~-~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~  307 (878)
                      +.++++++.++.+|..+ .+.+++|++++|.+..++...|. .+.+|++|+|++|.|..+| ..|..+++|++|+|++|.
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            57888888888888755 35688899999988888887777 8889999999999888776 468888999999999998


Q ss_pred             CCCc--ccccCcccCcEEEeeCCCcccch-HhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809          308 LGDM--AIIGDLKKLVILALRGSDMKELV-GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL  384 (878)
Q Consensus       308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  384 (878)
                      ++.+  ..+.++.+|++|++++|.++.++ ..|.++.           +|+.|++++|.+....         ......+
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-----------~L~~L~L~~N~l~~l~---------~~~~~~~  159 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-----------QLQKLYLSQNQISRFP---------VELIKDG  159 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----------TCCEEECCSSCCCSCC---------GGGTC--
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-----------cCCEEECCCCcCCeeC---------HHHhcCc
Confidence            8765  45888899999999988887764 4455444           5566688887765111         0112223


Q ss_pred             cCCCCCCEEEeecCCCCCCCc-chhcccC--CceEEEE
Q 048809          385 NNLSKLTSLEILIQDEKTLPR-DLSFFKM--LQRYRIL  419 (878)
Q Consensus       385 ~~l~~L~~L~l~~~~~~~~~~-~~~~l~~--L~~L~l~  419 (878)
                      ..+++|+.|++++|.+..+|. .+..++.  ++.|++.
T Consensus       160 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~  197 (361)
T 2xot_A          160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH  197 (361)
T ss_dssp             --CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred             ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence            678899999999998888874 3445554  3666665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.35  E-value=7.4e-14  Score=153.43  Aligned_cols=62  Identities=18%  Similarity=0.098  Sum_probs=33.1

Q ss_pred             ccccceEEecCcCCccc----ccccCcCCCCCCCcEEEEccCCCceE-----Eeeccccccccc-Ccccccceeeccccc
Q 048809          457 LKGIKDLCLGGSLDMKS----VLYGSDGEGFPQLKRLEVVKNSNLLC-----VVDTVDRATALT-TAFPVLESLLLRHLS  526 (878)
Q Consensus       457 l~~L~~L~l~~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~-~~~~~L~~L~L~~~~  526 (878)
                      +++|++|+++++.....    +...+....+++|++|+++++. +..     ++.       .. ..+++|+.|+++++.
T Consensus       243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~-------~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKT-------VIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHH-------HHHHHCTTCCEEECTTSB
T ss_pred             CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHH-------HHHhcCCCceEEEccCCc
Confidence            46666777766653221    1111211236778888887764 222     110       12 346788888887753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.35  E-value=8.2e-14  Score=153.08  Aligned_cols=272  Identities=14%  Similarity=0.120  Sum_probs=160.4

Q ss_pred             CCCCCC-CCCCccEEEeecCCCCCCCc----hhhcCCCCCcEEEeeCCCCCC----CCccc-------cCCCCCcEEEcc
Q 048809          241 ELPQGF-ECPQLKYFRIHNDHSLKIPD----NFFTGMTELRVLDFTRMHLLA----LPSSL-------GLLQNLQTLSLD  304 (878)
Q Consensus       241 ~l~~~~-~~~~Lr~L~l~~~~~~~l~~----~~~~~l~~Lr~L~Ls~~~i~~----lp~~i-------~~L~~L~~L~L~  304 (878)
                      .++..+ .+++|++|++++|.+.....    ..|.++++|++|+|++|.+..    +|..+       ..+++|++|+|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            344433 57888999998886554321    225688899999999876653    34444       688999999999


Q ss_pred             CCCCCC-----c-ccccCcccCcEEEeeCCCcccch-Hhhcc-cccCccc-ccccccCCcEEEccCCCCCcccccccccc
Q 048809          305 YCELGD-----M-AIIGDLKKLVILALRGSDMKELV-GEIGQ-LTQLRLL-IAPILSRLEELYIGESPIEWGKVEGVDGE  375 (878)
Q Consensus       305 ~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~~lp-~~i~~-L~~L~~L-ip~~l~~L~~L~l~~~~~~~~~~~~~~~~  375 (878)
                      +|.+..     + ..+.++++|++|++++|.+...+ ..+.. +..+... +....++|+.|++.+|.+....       
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~-------  175 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS-------  175 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG-------
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH-------
Confidence            998775     3 56788899999999998775322 22222 1111000 0001156777888887664110       


Q ss_pred             ccccCcccccCCCCCCEEEeecCCCCC------CCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCcccc
Q 048809          376 RRNASLHELNNLSKLTSLEILIQDEKT------LPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICL  449 (878)
Q Consensus       376 ~~~~~~~~L~~l~~L~~L~l~~~~~~~------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~  449 (878)
                       .......+..+++|+.|++++|.+..      .+..+.                                         
T Consensus       176 -~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~-----------------------------------------  213 (386)
T 2ca6_A          176 -MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-----------------------------------------  213 (386)
T ss_dssp             -HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG-----------------------------------------
T ss_pred             -HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh-----------------------------------------
Confidence             01122456677788888888876541      111221                                         


Q ss_pred             chhHHhhccccceEEecCcCCc----ccccccCcCCCCCCCcEEEEccCCCceEEeeccccccccc--Ccccccceeecc
Q 048809          450 NGGHIMQLKGIKDLCLGGSLDM----KSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALT--TAFPVLESLLLR  523 (878)
Q Consensus       450 ~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~--~~~~~L~~L~L~  523 (878)
                            .+++|+.|+++++...    ..+...+  ..+++|++|+++++. +......  ......  ..+++|+.|+++
T Consensus       214 ------~~~~L~~L~Ls~n~l~~~g~~~l~~~l--~~~~~L~~L~L~~n~-i~~~~~~--~l~~~l~~~~~~~L~~L~L~  282 (386)
T 2ca6_A          214 ------YCQELKVLDLQDNTFTHLGSSALAIAL--KSWPNLRELGLNDCL-LSARGAA--AVVDAFSKLENIGLQTLRLQ  282 (386)
T ss_dssp             ------GCTTCCEEECCSSCCHHHHHHHHHHHG--GGCTTCCEEECTTCC-CCHHHHH--HHHHHHHTCSSCCCCEEECC
T ss_pred             ------cCCCccEEECcCCCCCcHHHHHHHHHH--ccCCCcCEEECCCCC-CchhhHH--HHHHHHhhccCCCeEEEECc
Confidence                  2456666666665432    2222222  357899999999875 3221000  000011  348999999999


Q ss_pred             ccccccc-----eecCCCCc-cccCCccEEEeecCCCcccccc--hhhhhhccCccEEEEec
Q 048809          524 HLSNLEK-----ICRGPLAA-ESFCKVKDIRVEWCDKLKNVFP--LVIGRGLQQLQSIEVTG  577 (878)
Q Consensus       524 ~~~~L~~-----~~~~~~~~-~~l~~L~~L~l~~c~~L~~l~~--~~~~~~l~~L~~L~l~~  577 (878)
                      ++. ++.     ++.   .+ ..+++|+.|++.+| .+....+  ......+++++.+++..
T Consensus       283 ~n~-i~~~g~~~l~~---~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          283 YNE-IELDAVRTLKT---VIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             SSC-CBHHHHHHHHH---HHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred             CCc-CCHHHHHHHHH---HHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhh
Confidence            864 443     211   12 45799999999996 4544432  22334566666555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.34  E-value=5.5e-12  Score=136.78  Aligned_cols=165  Identities=20%  Similarity=0.258  Sum_probs=128.3

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCCCC---CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-c
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQGF---ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-S  291 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~---~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~  291 (878)
                      .+...|. .++..+++|++++|.++.++...   .+++|++|++++|.+..++...|..+++|++|+|++|.+..+|. .
T Consensus        29 ~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  107 (361)
T 2xot_A           29 QLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL  107 (361)
T ss_dssp             CCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             CcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHH
Confidence            3444443 45677899999999999887653   78999999999999999988878999999999999999988865 5


Q ss_pred             ccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHhh-cccccCcccccccccCCcEEEccCCCCCccc
Q 048809          292 LGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGEI-GQLTQLRLLIAPILSRLEELYIGESPIEWGK  368 (878)
Q Consensus       292 i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~  368 (878)
                      |..+.+|++|+|++|.++.+  ..+.++.+|++|++++|.++.+|..+ ..+.        .+++|+.|++++|.+.   
T Consensus       108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~--------~l~~L~~L~L~~N~l~---  176 (361)
T 2xot_A          108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN--------KLPKLMLLDLSSNKLK---  176 (361)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC------------CTTCCEEECCSSCCC---
T ss_pred             hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcc--------cCCcCCEEECCCCCCC---
Confidence            78999999999999998865  67899999999999999999988764 1111        3456778899888776   


Q ss_pred             cccccccccccCcccccCCCC--CCEEEeecCCCC
Q 048809          369 VEGVDGERRNASLHELNNLSK--LTSLEILIQDEK  401 (878)
Q Consensus       369 ~~~~~~~~~~~~~~~L~~l~~--L~~L~l~~~~~~  401 (878)
                               ......+..+++  ++.|++.+|...
T Consensus       177 ---------~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          177 ---------KLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             ---------CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ---------ccCHHHhhhccHhhcceEEecCCCcc
Confidence                     122345555655  477888888643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.33  E-value=4.7e-12  Score=126.63  Aligned_cols=131  Identities=21%  Similarity=0.326  Sum_probs=113.2

Q ss_pred             cccCCCcEEEeeCCCCCCCCC-C-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-cccCCCCCc
Q 048809          224 DVLKDCTAISLNNSNINELPQ-G-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-SLGLLQNLQ  299 (878)
Q Consensus       224 ~~~~~lr~l~l~~~~~~~l~~-~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~  299 (878)
                      .++..+++|++++|.++.++. . + .+++|++|++++|.+..++...|..+++|++|+|++|.++.+|. .+..+++|+
T Consensus        29 ~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  108 (220)
T 2v70_A           29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLK  108 (220)
T ss_dssp             CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCC
T ss_pred             CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCC
Confidence            456778999999999998843 2 3 89999999999999999998888999999999999999998865 489999999


Q ss_pred             EEEccCCCCCCc--ccccCcccCcEEEeeCCCcccc-hHhhcccccCcccccccccCCcEEEccCCCCC
Q 048809          300 TLSLDYCELGDM--AIIGDLKKLVILALRGSDMKEL-VGEIGQLTQLRLLIAPILSRLEELYIGESPIE  365 (878)
Q Consensus       300 ~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~  365 (878)
                      +|+|++|.++.+  ..+.++.+|++|++++|.++.+ |..+..+.           +|+.|++.+|.+.
T Consensus       109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----------~L~~L~L~~N~l~  166 (220)
T 2v70_A          109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH-----------SLSTLNLLANPFN  166 (220)
T ss_dssp             EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT-----------TCCEEECCSCCEE
T ss_pred             EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC-----------CCCEEEecCcCCc
Confidence            999999999875  7799999999999999999987 55566554           5667788888765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.33  E-value=3.8e-12  Score=121.54  Aligned_cols=119  Identities=21%  Similarity=0.268  Sum_probs=103.0

Q ss_pred             cCCCcEEEeeCCCCC--CCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCC-CCccccCCCCCcEE
Q 048809          226 LKDCTAISLNNSNIN--ELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLA-LPSSLGLLQNLQTL  301 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i~~L~~L~~L  301 (878)
                      +.++++|++++|.+.  .+|..+ .+++|++|++++|.+..+  ..|..+++|++|++++|.+.. +|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            567999999999998  888875 899999999999988888  347999999999999999987 77777889999999


Q ss_pred             EccCCCCCCc---ccccCcccCcEEEeeCCCcccchH----hhcccccCccc
Q 048809          302 SLDYCELGDM---AIIGDLKKLVILALRGSDMKELVG----EIGQLTQLRLL  346 (878)
Q Consensus       302 ~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L  346 (878)
                      ++++|.++.+   ..++.+++|++|++++|.++.+|.    .+..+++|++|
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  152 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL  152 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence            9999998874   678999999999999999998886    56665544443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.32  E-value=2.2e-12  Score=120.50  Aligned_cols=119  Identities=23%  Similarity=0.255  Sum_probs=105.1

Q ss_pred             cCCCcEEEeeCCCCC--CCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCC-CCccccCCCCCcEE
Q 048809          226 LKDCTAISLNNSNIN--ELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLA-LPSSLGLLQNLQTL  301 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~-lp~~i~~L~~L~~L  301 (878)
                      +.++++|++++|.++  .+|..+ .+++|++|++++|.+..+  ..|..+++|++|++++|.+.. +|..++.+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            467999999999998  788775 899999999999988888  447999999999999999987 78888889999999


Q ss_pred             EccCCCCCCc---ccccCcccCcEEEeeCCCcccchH----hhcccccCccc
Q 048809          302 SLDYCELGDM---AIIGDLKKLVILALRGSDMKELVG----EIGQLTQLRLL  346 (878)
Q Consensus       302 ~L~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L  346 (878)
                      ++++|.++.+   ..++.+++|++|++++|.++.+|.    .++.+++|++|
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  145 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL  145 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence            9999999874   789999999999999999988876    57777777665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.31  E-value=3.7e-12  Score=121.60  Aligned_cols=137  Identities=20%  Similarity=0.249  Sum_probs=107.9

Q ss_pred             CCCccEEEeecCCCC--CCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCC-c-ccccCcccCcEE
Q 048809          248 CPQLKYFRIHNDHSL--KIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGD-M-AIIGDLKKLVIL  323 (878)
Q Consensus       248 ~~~Lr~L~l~~~~~~--~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-l-~~i~~L~~L~~L  323 (878)
                      .++|++|++++|.+.  .+|.. |..+++|++|++++|.+..+ ..++.+++|++|++++|.++. + ..++++++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            478999999999877  78765 58999999999999999888 788999999999999999886 5 556679999999


Q ss_pred             EeeCCCcccch--HhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCC
Q 048809          324 ALRGSDMKELV--GEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEK  401 (878)
Q Consensus       324 ~l~~~~l~~lp--~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~  401 (878)
                      ++++|.++.+|  ..++++           ++|+.|++.+|.+....         ......+..+++|+.|+++.+...
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l-----------~~L~~L~l~~N~l~~~~---------~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKL-----------ECLKSLDLFNCEVTNLN---------DYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSC-----------SCCCEEECCSSGGGTST---------THHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcC-----------CCCCEEEeeCCcCcchH---------HHHHHHHHhCccCcEecCCCCChh
Confidence            99999998876  445544           45667788888665100         001136788899999999998887


Q ss_pred             CCCcc
Q 048809          402 TLPRD  406 (878)
Q Consensus       402 ~~~~~  406 (878)
                      .+|.+
T Consensus       161 ~~~~~  165 (168)
T 2ell_A          161 EAPDS  165 (168)
T ss_dssp             BCCSS
T ss_pred             hcccc
Confidence            77754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.28  E-value=1.4e-11  Score=120.33  Aligned_cols=124  Identities=18%  Similarity=0.359  Sum_probs=104.5

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCch-hhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCC
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDN-FFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCE  307 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~-~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~  307 (878)
                      +.++++++.++++|..+. +++++|++++|.+..++.. +|..+++|++|+|++|.++.+ |..|+.+++|++|+|++|.
T Consensus        11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            688999999999988663 4999999999999888864 579999999999999999877 7889999999999999999


Q ss_pred             CCCc--ccccCcccCcEEEeeCCCcccc-hHhhcccccCcccccccccCCcEEEccCCCCC
Q 048809          308 LGDM--AIIGDLKKLVILALRGSDMKEL-VGEIGQLTQLRLLIAPILSRLEELYIGESPIE  365 (878)
Q Consensus       308 l~~l--~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~  365 (878)
                      ++.+  ..++++++|++|++++|.++.+ |..++.+.           +|+.|++.+|.+.
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----------~L~~L~L~~N~l~  139 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-----------SLTSLNLASNPFN  139 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-----------TCCEEECTTCCBC
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC-----------CCCEEEeCCCCcc
Confidence            9865  5589999999999999988876 45566544           5666788888665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.26  E-value=3.6e-11  Score=136.72  Aligned_cols=159  Identities=16%  Similarity=0.183  Sum_probs=126.2

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCC
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLL  295 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L  295 (878)
                      .....+  ..+.++++|++++|.++.+|. +. .+|++|++++|.+..+|.    .+++|++|++++|.++.+|.   .+
T Consensus        91 ~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~-~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l  159 (571)
T 3cvr_A           91 ALISLP--ELPASLEYLDACDNRLSTLPE-LP-ASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLPE---LP  159 (571)
T ss_dssp             CCSCCC--CCCTTCCEEECCSSCCSCCCC-CC-TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC---CC
T ss_pred             CCcccc--cccCCCCEEEccCCCCCCcch-hh-cCCCEEECCCCcCCCCCC----cCccccEEeCCCCccCcCCC---cC
Confidence            334444  567899999999999999988 42 399999999999999987    68999999999999999987   67


Q ss_pred             CCCcEEEccCCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCcccccccccc
Q 048809          296 QNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGE  375 (878)
Q Consensus       296 ~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~  375 (878)
                      ++|++|+|++|.++.++.++  .+|++|++++|.++.+|. +..  +|..    ....|+.|++++|.+.          
T Consensus       160 ~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~----~~~~L~~L~Ls~N~l~----------  220 (571)
T 3cvr_A          160 TSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPA-VPV--RNHH----SEETEIFFRCRENRIT----------  220 (571)
T ss_dssp             TTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCC-CC--------------CCEEEECCSSCCC----------
T ss_pred             CCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhh-HHH--hhhc----ccccceEEecCCCcce----------
Confidence            89999999999998874466  999999999999999888 654  3311    2234588999999876          


Q ss_pred             ccccCcccccCCCCCCEEEeecCCCCC-CCcch
Q 048809          376 RRNASLHELNNLSKLTSLEILIQDEKT-LPRDL  407 (878)
Q Consensus       376 ~~~~~~~~L~~l~~L~~L~l~~~~~~~-~~~~~  407 (878)
                         ..+..+..+++|+.|++++|.... .|..+
T Consensus       221 ---~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          221 ---HIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             ---CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             ---ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence               345667789999999999998653 34433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.26  E-value=6.9e-12  Score=120.70  Aligned_cols=119  Identities=18%  Similarity=0.175  Sum_probs=102.1

Q ss_pred             cCCCcEEEeeCCCCCCCCCCCCCC-CccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccc-cCCCCCcEEEc
Q 048809          226 LKDCTAISLNNSNINELPQGFECP-QLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSL-GLLQNLQTLSL  303 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~~~~-~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~L~L  303 (878)
                      +.++++|++++|.++.++....+. +|++|++++|.+..++  .|..+++|++|++++|.+..+|..+ +.+++|++|++
T Consensus        18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            567899999999999997655555 9999999999888883  3799999999999999999998766 89999999999


Q ss_pred             cCCCCCCc-c--cccCcccCcEEEeeCCCcccchHh----hcccccCccc
Q 048809          304 DYCELGDM-A--IIGDLKKLVILALRGSDMKELVGE----IGQLTQLRLL  346 (878)
Q Consensus       304 ~~~~l~~l-~--~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L  346 (878)
                      ++|.++.+ .  .++.+++|++|++++|.+..+|..    ++.+++|++|
T Consensus        96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~L  145 (176)
T 1a9n_A           96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL  145 (176)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEE
T ss_pred             CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCcccee
Confidence            99999876 3  689999999999999999888875    6665554444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.25  E-value=5.3e-11  Score=114.64  Aligned_cols=106  Identities=22%  Similarity=0.394  Sum_probs=83.9

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcEEEccCCCC
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQTLSLDYCEL  308 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~l  308 (878)
                      +.+++.++.+..+|..+ .++|++|++++|.+..++...|..+++|++|++++|.++.+|.. ++.+++|++|++++|.+
T Consensus        10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             TEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence            56777788888777544 36888888888888888877778888888888888888877654 57888888888888888


Q ss_pred             CCc--ccccCcccCcEEEeeCCCcccchHh
Q 048809          309 GDM--AIIGDLKKLVILALRGSDMKELVGE  336 (878)
Q Consensus       309 ~~l--~~i~~L~~L~~L~l~~~~l~~lp~~  336 (878)
                      +.+  ..++++.+|++|++++|.++.+|..
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  118 (177)
T 2o6r_A           89 QSLPNGVFDKLTQLKELALDTNQLKSVPDG  118 (177)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence            765  3467888888888888888877765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.25  E-value=2.8e-11  Score=118.11  Aligned_cols=123  Identities=24%  Similarity=0.415  Sum_probs=103.6

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCC
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCEL  308 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l  308 (878)
                      +.++++++.++.+|..+ .++|++|++++|.+..+|. .|..+++|++|+|++|.|+.++ ..|..+++|++|+|++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            57889999999998765 3689999999999999995 4699999999999999998886 5689999999999999998


Q ss_pred             CCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCC
Q 048809          309 GDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIE  365 (878)
Q Consensus       309 ~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~  365 (878)
                      +.+  ..++++++|++|++++|.++.+|.+ +..+.           +|+.|++.+|.+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----------~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS-----------ALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-----------TCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc-----------cccEEEeCCCCee
Confidence            876  5699999999999999999988875 55444           5566788877654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.25  E-value=9.7e-13  Score=142.93  Aligned_cols=84  Identities=14%  Similarity=0.152  Sum_probs=43.6

Q ss_pred             ccEEEeecCCCCCCCc----hhhcCCC-CCcEEEeeCCCCCCC-CccccCC-----CCCcEEEccCCCCCCc--cc----
Q 048809          251 LKYFRIHNDHSLKIPD----NFFTGMT-ELRVLDFTRMHLLAL-PSSLGLL-----QNLQTLSLDYCELGDM--AI----  313 (878)
Q Consensus       251 Lr~L~l~~~~~~~l~~----~~~~~l~-~Lr~L~Ls~~~i~~l-p~~i~~L-----~~L~~L~L~~~~l~~l--~~----  313 (878)
                      |++|++++|.+...+.    ..|.+++ +|++|+|++|.+... +..+..+     ++|++|+|++|.++..  ..    
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  103 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT  103 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence            6666666665555553    3445555 566666666655433 3334332     5566666666655432  22    


Q ss_pred             ccCc-ccCcEEEeeCCCcccch
Q 048809          314 IGDL-KKLVILALRGSDMKELV  334 (878)
Q Consensus       314 i~~L-~~L~~L~l~~~~l~~lp  334 (878)
                      +..+ ++|++|++++|.++..+
T Consensus       104 l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A          104 LAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGGGSC
T ss_pred             HHhCCCCccEEECcCCcCCcHH
Confidence            2333 55666666666554433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.24  E-value=1.3e-12  Score=141.95  Aligned_cols=158  Identities=13%  Similarity=0.221  Sum_probs=90.6

Q ss_pred             cCCCcEEEeeCCCCCCCCC-----CC-CCC-CccEEEeecCCCCCCCchhhcCC-----CCCcEEEeeCCCCCCCC-cc-
Q 048809          226 LKDCTAISLNNSNINELPQ-----GF-ECP-QLKYFRIHNDHSLKIPDNFFTGM-----TELRVLDFTRMHLLALP-SS-  291 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~-----~~-~~~-~Lr~L~l~~~~~~~l~~~~~~~l-----~~Lr~L~Ls~~~i~~lp-~~-  291 (878)
                      +.++++|++++|.++..+.     .+ .++ +|++|++++|.+.......|..+     ++|++|+|++|.+...+ .. 
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            4457777777777766653     22 456 77777777776666544444443     77777777777776443 22 


Q ss_pred             ---ccCC-CCCcEEEccCCCCCCc--cc----ccC-cccCcEEEeeCCCccc-----chHhhcccccCcccccccccCCc
Q 048809          292 ---LGLL-QNLQTLSLDYCELGDM--AI----IGD-LKKLVILALRGSDMKE-----LVGEIGQLTQLRLLIAPILSRLE  355 (878)
Q Consensus       292 ---i~~L-~~L~~L~L~~~~l~~l--~~----i~~-L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~Lip~~l~~L~  355 (878)
                         +..+ ++|++|++++|.++..  ..    +.. .++|++|++++|.++.     ++..+..+.          .+|+
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~----------~~L~  170 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP----------ANVN  170 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC----------TTCC
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC----------cccc
Confidence               3444 6777777777776543  22    333 2577777777776652     233232211          2566


Q ss_pred             EEEccCCCCCccccccccccccccCcccccCC-CCCCEEEeecCCCC
Q 048809          356 ELYIGESPIEWGKVEGVDGERRNASLHELNNL-SKLTSLEILIQDEK  401 (878)
Q Consensus       356 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l-~~L~~L~l~~~~~~  401 (878)
                      .|++++|.+...        ........+... ++|+.|++++|.+.
T Consensus       171 ~L~Ls~n~l~~~--------~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          171 SLNLRGNNLASK--------NCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             EEECTTSCGGGS--------CHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             EeeecCCCCchh--------hHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            667777655410        001112234444 46777777766544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.22  E-value=4.5e-11  Score=114.39  Aligned_cols=112  Identities=21%  Similarity=0.323  Sum_probs=98.9

Q ss_pred             CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcEEEccCCC
Q 048809          229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQTLSLDYCE  307 (878)
Q Consensus       229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~  307 (878)
                      .+.++++++.+..+|..+. ++|++|++++|.+..++...|.++++|++|+|++|.++.+|.. +..+++|++|+|++|.
T Consensus        14 ~~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            3689999999999998764 8999999999999999887889999999999999999999876 5899999999999999


Q ss_pred             CCCc--ccccCcccCcEEEeeCCCcccchHhhcccc
Q 048809          308 LGDM--AIIGDLKKLVILALRGSDMKELVGEIGQLT  341 (878)
Q Consensus       308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~  341 (878)
                      ++.+  ..++++.+|++|++++|.+...+.++..|.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~  128 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR  128 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence            9876  349999999999999998887776655544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.20  E-value=1.7e-11  Score=114.30  Aligned_cols=84  Identities=23%  Similarity=0.323  Sum_probs=53.5

Q ss_pred             CCccEEEeecCCCC--CCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCC-c-ccccCcccCcEEE
Q 048809          249 PQLKYFRIHNDHSL--KIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGD-M-AIIGDLKKLVILA  324 (878)
Q Consensus       249 ~~Lr~L~l~~~~~~--~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~-l-~~i~~L~~L~~L~  324 (878)
                      ++|++|++++|.+.  .+|.. |..+++|++|++++|.+..+ ..++.+++|++|++++|.++. + ..++++++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            56667777766555  55543 46666777777777766665 556666677777777766655 4 4445566677777


Q ss_pred             eeCCCcccch
Q 048809          325 LRGSDMKELV  334 (878)
Q Consensus       325 l~~~~l~~lp  334 (878)
                      +++|.++.+|
T Consensus        95 ls~N~i~~~~  104 (149)
T 2je0_A           95 LSGNKIKDLS  104 (149)
T ss_dssp             CTTSCCCSHH
T ss_pred             CCCCcCCChH
Confidence            7666666544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.20  E-value=1.9e-11  Score=144.58  Aligned_cols=153  Identities=20%  Similarity=0.248  Sum_probs=93.1

Q ss_pred             cCCCcEEEeeCCCCCCCCCCC-CCCCccEEEe-----ecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCc
Q 048809          226 LKDCTAISLNNSNINELPQGF-ECPQLKYFRI-----HNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQ  299 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l-----~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~  299 (878)
                      ...++++++.++.+..++... ...+|+.+.+     ..|.+. ++.+.|..+.+|++|+|++|.+..+|..+..+++|+
T Consensus       172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~  250 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT  250 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred             CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence            345788889888877765443 3334444333     333333 455667999999999999999999999999999999


Q ss_pred             EEEccCCCCCCc-ccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccc
Q 048809          300 TLSLDYCELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRN  378 (878)
Q Consensus       300 ~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  378 (878)
                      +|+|++|.++.+ ..+++|++|++|+|++|.++.+|..|++|.+           |+.|++.+|.+.             
T Consensus       251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~-----------L~~L~L~~N~l~-------------  306 (727)
T 4b8c_D          251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ-----------LKYFYFFDNMVT-------------  306 (727)
T ss_dssp             CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT-----------CSEEECCSSCCC-------------
T ss_pred             EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC-----------CCEEECCCCCCC-------------
Confidence            999999998876 7799999999999999999999988886654           556688887664             


Q ss_pred             cCcccccCCCCCCEEEeecCCCCCC
Q 048809          379 ASLHELNNLSKLTSLEILIQDEKTL  403 (878)
Q Consensus       379 ~~~~~L~~l~~L~~L~l~~~~~~~~  403 (878)
                      ..+..++++++|+.|+|++|.....
T Consensus       307 ~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          307 TLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             CCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             ccChhhhcCCCccEEeCCCCccCCC
Confidence            3455688899999999999987644

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.19  E-value=4.6e-11  Score=116.57  Aligned_cols=124  Identities=19%  Similarity=0.205  Sum_probs=103.4

Q ss_pred             cEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc--ccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeC
Q 048809          252 KYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS--LGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRG  327 (878)
Q Consensus       252 r~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~--i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~  327 (878)
                      ++++++++.+..+|..++   .+|++|++++|.+..+|..  ++.+++|++|+|++|.++.+  ..++++.+|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            789999999999998653   3899999999999988764  89999999999999999875  6799999999999999


Q ss_pred             CCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCC
Q 048809          328 SDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEK  401 (878)
Q Consensus       328 ~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~  401 (878)
                      |.++.++.. ++.+           ++|+.|++++|.+.            ...+..+..+++|+.|++++|...
T Consensus        88 N~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGL-----------HQLKTLNLYDNQIS------------CVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTC-----------TTCCEEECCSSCCC------------EECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCC-----------CCCCEEECCCCcCC------------eeCHHHhhcCCCCCEEEeCCCCcc
Confidence            999887764 5544           45677788888776            234567788899999999988754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.19  E-value=8.6e-11  Score=114.62  Aligned_cols=115  Identities=22%  Similarity=0.364  Sum_probs=101.0

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-cccc
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLG  293 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~  293 (878)
                      .....|. .++.++++|++++|.++.+|..+ .+++|++|++++|.+..++...|..+++|++|+|++|.++.+| ..|.
T Consensus        21 ~l~~ip~-~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~   99 (193)
T 2wfh_A           21 GLKVLPK-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD   99 (193)
T ss_dssp             CCSSCCS-CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred             CCCcCCC-CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhC
Confidence            3444443 35678999999999999998666 8999999999999999999888999999999999999999886 4689


Q ss_pred             CCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcc
Q 048809          294 LLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMK  331 (878)
Q Consensus       294 ~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~  331 (878)
                      .+++|++|+|++|.++.+  ..+..+.+|++|++++|.+.
T Consensus       100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            999999999999999876  46899999999999998664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.18  E-value=1.8e-10  Score=110.89  Aligned_cols=115  Identities=23%  Similarity=0.399  Sum_probs=100.8

Q ss_pred             cccCCCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcE
Q 048809          224 DVLKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQT  300 (878)
Q Consensus       224 ~~~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~  300 (878)
                      ..+.++++|++++|.++.++...  .+++|++|++++|.+..++...|..+++|++|++++|.++.+|.. +..+++|++
T Consensus        25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  104 (177)
T 2o6r_A           25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE  104 (177)
T ss_dssp             TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCE
Confidence            45678999999999999988754  789999999999999999998889999999999999999988765 689999999


Q ss_pred             EEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHhhc
Q 048809          301 LSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGEIG  338 (878)
Q Consensus       301 L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i~  338 (878)
                      |++++|.++.+  ..+.++++|++|++++|.+...+..+.
T Consensus       105 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~  144 (177)
T 2o6r_A          105 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  144 (177)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred             EECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHH
Confidence            99999998876  446889999999999998876555433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.18  E-value=1.1e-11  Score=119.39  Aligned_cols=132  Identities=17%  Similarity=0.204  Sum_probs=89.7

Q ss_pred             CCCCCCccEEEeecCCCCCCCchhhcCCC-CCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCc-cc-ccCcccCc
Q 048809          245 GFECPQLKYFRIHNDHSLKIPDNFFTGMT-ELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM-AI-IGDLKKLV  321 (878)
Q Consensus       245 ~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~-~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-~~-i~~L~~L~  321 (878)
                      ...+++|++|++++|.+..+|. + ..+. +|++|++++|.++.+ ..++.+++|++|++++|.++.+ +. ++.+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~-~-~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN-L-GATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-G-GGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCchhHH-h-hhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            3467788888888888777764 3 4444 888888888888877 6788888888888888888765 33 48888888


Q ss_pred             EEEeeCCCcccchH--hhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCC
Q 048809          322 ILALRGSDMKELVG--EIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQD  399 (878)
Q Consensus       322 ~L~l~~~~l~~lp~--~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~  399 (878)
                      +|++++|.++.+|.  .++.+           ++|+.|++.+|.+....         ......+..+++|+.|+++.+.
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l-----------~~L~~L~l~~N~i~~~~---------~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASL-----------KSLTYLCILRNPVTNKK---------HYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGC-----------TTCCEEECCSSGGGGST---------THHHHHHHHCTTCSEETTEECC
T ss_pred             EEECCCCcCCcchhhHhhhcC-----------CCCCEEEecCCCCCCcH---------hHHHHHHHHCCccceeCCCcCC
Confidence            88888888877775  34433           34555566666543000         0001125566667776666554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.17  E-value=1e-10  Score=111.47  Aligned_cols=108  Identities=21%  Similarity=0.343  Sum_probs=94.7

Q ss_pred             CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcEEEccCCC
Q 048809          229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQTLSLDYCE  307 (878)
Q Consensus       229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~  307 (878)
                      .+.++++++.++.+|..+ .++|++|++++|.+..++...|..+++|++|+|++|.++.+|.. +..+++|++|+|++|.
T Consensus        11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            468999999999999876 48999999999999999888789999999999999999998765 5899999999999999


Q ss_pred             CCCc--ccccCcccCcEEEeeCCCcccchHhh
Q 048809          308 LGDM--AIIGDLKKLVILALRGSDMKELVGEI  337 (878)
Q Consensus       308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~i  337 (878)
                      ++.+  ..+.++++|++|++++|.+.-.+..+
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l  121 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI  121 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCTTBGGG
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCCCCchhH
Confidence            9876  45899999999999999776555433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.12  E-value=1.3e-10  Score=132.91  Aligned_cols=105  Identities=18%  Similarity=0.232  Sum_probs=59.4

Q ss_pred             CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCC
Q 048809          229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCEL  308 (878)
Q Consensus       229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l  308 (878)
                      ++.|++++|.++.+|....+++|++|++++|.+..+|.. |+.+++|++|+|++|.++.+| .++.+++|++|+|++|.+
T Consensus       443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l  520 (567)
T 1dce_A          443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL  520 (567)
T ss_dssp             CSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred             ceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC
Confidence            555666665555555533555566666666655555554 355566666666666555555 555566666666666555


Q ss_pred             CC---cccccCcccCcEEEeeCCCcccchH
Q 048809          309 GD---MAIIGDLKKLVILALRGSDMKELVG  335 (878)
Q Consensus       309 ~~---l~~i~~L~~L~~L~l~~~~l~~lp~  335 (878)
                      +.   +..++++++|++|++++|.++.+|.
T Consensus       521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            43   2455556666666666655555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.12  E-value=6e-11  Score=140.24  Aligned_cols=95  Identities=23%  Similarity=0.262  Sum_probs=50.0

Q ss_pred             CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCc-ccccCcccCcEEEe
Q 048809          247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM-AIIGDLKKLVILAL  325 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-~~i~~L~~L~~L~l  325 (878)
                      .+++|++|++++|.+..+|..+| ++++|++|+|++|.++.+|..|++|++|++|+|++|.++.+ ..+++|.+|++|+|
T Consensus       222 ~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L  300 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF  300 (727)
T ss_dssp             CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEEC
T ss_pred             cCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEEC
Confidence            44555555555555555555442 45555555555555555555555555555555555555443 44555555555555


Q ss_pred             eCCCcccchHhhccccc
Q 048809          326 RGSDMKELVGEIGQLTQ  342 (878)
Q Consensus       326 ~~~~l~~lp~~i~~L~~  342 (878)
                      ++|.++.+|.+|++|.+
T Consensus       301 ~~N~l~~lp~~~~~l~~  317 (727)
T 4b8c_D          301 FDNMVTTLPWEFGNLCN  317 (727)
T ss_dssp             CSSCCCCCCSSTTSCTT
T ss_pred             CCCCCCccChhhhcCCC
Confidence            55555555554444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.12  E-value=1.4e-10  Score=132.65  Aligned_cols=119  Identities=18%  Similarity=0.246  Sum_probs=86.8

Q ss_pred             CCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCc-ccccCcccCcEEEeeCCCcccchHhhcccccCccccccccc
Q 048809          274 ELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM-AIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILS  352 (878)
Q Consensus       274 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~  352 (878)
                      .|++|+|++|.++.+|. ++.+++|++|+|++|.++.+ ..++++++|++|++++|.++.+| .+++++           
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~-----------  508 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLP-----------  508 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCS-----------
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCC-----------
Confidence            47888888888888876 88888888888888887765 67888888888888888887777 566544           


Q ss_pred             CCcEEEccCCCCCccccccccccccccC-cccccCCCCCCEEEeecCCCCCCCcchh----cccCCceEE
Q 048809          353 RLEELYIGESPIEWGKVEGVDGERRNAS-LHELNNLSKLTSLEILIQDEKTLPRDLS----FFKMLQRYR  417 (878)
Q Consensus       353 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~L~~l~~L~~L~l~~~~~~~~~~~~~----~l~~L~~L~  417 (878)
                      +|+.|++++|.+.            ... +..++.+++|+.|++++|.....|....    .+++|+.|+
T Consensus       509 ~L~~L~Ls~N~l~------------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          509 RLQELLLCNNRLQ------------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SCCEEECCSSCCC------------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCcEEECCCCCCC------------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            4455677777665            122 5677788888888888887766655432    467777764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.07  E-value=3.1e-12  Score=125.77  Aligned_cols=123  Identities=19%  Similarity=0.354  Sum_probs=85.8

Q ss_pred             CcEEEeeCC--CCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809          229 CTAISLNNS--NINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY  305 (878)
Q Consensus       229 lr~l~l~~~--~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~  305 (878)
                      ++...+.+.  .++.+|..+ .+++|++|++++|.+..+|  .|..+++|++|++++|.+..+|..+..+++|++|++++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence            455555543  455555444 6778888888888777777  35778888888888888877877777777888888888


Q ss_pred             CCCCCcccccCcccCcEEEeeCCCcccchH--hhcccccCcccccccccCCcEEEccCCCC
Q 048809          306 CELGDMAIIGDLKKLVILALRGSDMKELVG--EIGQLTQLRLLIAPILSRLEELYIGESPI  364 (878)
Q Consensus       306 ~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~Lip~~l~~L~~L~l~~~~~  364 (878)
                      |.++.++.++++++|++|++++|.++.+|.  .+++++           +|+.|++.+|.+
T Consensus       103 N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~-----------~L~~L~l~~N~l  152 (198)
T 1ds9_A          103 NQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALD-----------KLEDLLLAGNPL  152 (198)
T ss_dssp             EECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTT-----------TCSEEEECSCHH
T ss_pred             CcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCC-----------CCCEEEecCCcc
Confidence            887777677778888888888887776654  344333           445556666644

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.96  E-value=1.7e-09  Score=103.27  Aligned_cols=101  Identities=21%  Similarity=0.333  Sum_probs=86.6

Q ss_pred             ccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeC
Q 048809          251 LKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRG  327 (878)
Q Consensus       251 Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~  327 (878)
                      -++++++++.+..+|..+   ..+|++|+|++|.++.+ |..|+.+++|++|+|++|.++.+  ..++++.+|++|++++
T Consensus        14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            378999999999999875   38999999999999988 67789999999999999999877  3478999999999999


Q ss_pred             CCcccchHh-hcccccCcccccccccCCcEEEccCCCCC
Q 048809          328 SDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIE  365 (878)
Q Consensus       328 ~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~  365 (878)
                      |.++.+|.+ ++++.           +|+.|++.+|.+.
T Consensus        91 N~l~~l~~~~~~~l~-----------~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLK-----------SLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCT-----------TCSEEECCSSCBC
T ss_pred             CccceeCHHHhcccc-----------CCCEEEeCCCCcc
Confidence            999999876 66554           5566788888665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.95  E-value=1.9e-09  Score=102.59  Aligned_cols=102  Identities=20%  Similarity=0.315  Sum_probs=87.3

Q ss_pred             CccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEee
Q 048809          250 QLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALR  326 (878)
Q Consensus       250 ~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~  326 (878)
                      ..++++++++.+..+|..+   .++|++|+|++|.|+.+ |..|..+++|++|+|++|.++.+  ..+.++.+|++|+++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3578999999999999865   38999999999999988 67799999999999999999876  457999999999999


Q ss_pred             CCCcccchHh-hcccccCcccccccccCCcEEEccCCCCC
Q 048809          327 GSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIE  365 (878)
Q Consensus       327 ~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~  365 (878)
                      +|.++.+|.+ ++++.           +|+.|++.+|.+.
T Consensus        87 ~N~l~~~~~~~~~~l~-----------~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLK-----------SLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCT-----------TCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCC-----------CCCEEEeCCCCCC
Confidence            9999998875 66554           5566788888665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.90  E-value=3.9e-11  Score=117.86  Aligned_cols=108  Identities=20%  Similarity=0.245  Sum_probs=95.1

Q ss_pred             ccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEcc
Q 048809          225 VLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLD  304 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~  304 (878)
                      ...++++|++++|.++.+|....+++|++|++++|.+..+|.. +..+++|++|++++|.+..+| .++.+++|++|+++
T Consensus        46 ~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~  123 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMS  123 (198)
T ss_dssp             HTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEES
T ss_pred             cCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECC
Confidence            3568999999999999998433899999999999988899875 577899999999999999987 68999999999999


Q ss_pred             CCCCCCc---ccccCcccCcEEEeeCCCcccch
Q 048809          305 YCELGDM---AIIGDLKKLVILALRGSDMKELV  334 (878)
Q Consensus       305 ~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp  334 (878)
                      +|.++.+   ..+.++++|++|++++|.+...+
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  156 (198)
T 1ds9_A          124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred             CCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence            9999875   46899999999999999776653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.70  E-value=3.3e-08  Score=106.42  Aligned_cols=102  Identities=20%  Similarity=0.272  Sum_probs=82.0

Q ss_pred             cEEEeeCC-CCCCCCCCCCCCCccEEEeec-CCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCC
Q 048809          230 TAISLNNS-NINELPQGFECPQLKYFRIHN-DHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYC  306 (878)
Q Consensus       230 r~l~l~~~-~~~~l~~~~~~~~Lr~L~l~~-~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~  306 (878)
                      ..++++++ .++.+|....+++|++|+|++ |.+..++...|..+.+|++|+|++|.++.+| ..|.+|++|++|+|++|
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            34677777 788888822788899999986 8888898887899999999999999998775 46789999999999999


Q ss_pred             CCCCc-c-cccCcccCcEEEeeCCCccc
Q 048809          307 ELGDM-A-IIGDLKKLVILALRGSDMKE  332 (878)
Q Consensus       307 ~l~~l-~-~i~~L~~L~~L~l~~~~l~~  332 (878)
                      .++.+ . .+..+. |++|++.+|.+.-
T Consensus        91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           91 ALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            98865 3 344444 9999999887654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.69  E-value=1.8e-08  Score=107.57  Aligned_cols=156  Identities=13%  Similarity=0.084  Sum_probs=100.9

Q ss_pred             CCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCC----CCc--------ccc
Q 048809          248 CPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCEL----GDM--------AII  314 (878)
Q Consensus       248 ~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l----~~l--------~~i  314 (878)
                      +++|+.|.+.+ .+..|++..|..+.+|+.|++++|.+..++ ..|..+.++.++.+.....    ..+        ..+
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            78888888888 778888888888999999999888887664 4466666676666554110    000        000


Q ss_pred             --------------------------------------------cCcccCcEEEeeCCCcccchHh-hcccccCccc-cc
Q 048809          315 --------------------------------------------GDLKKLVILALRGSDMKELVGE-IGQLTQLRLL-IA  348 (878)
Q Consensus       315 --------------------------------------------~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L-ip  348 (878)
                                                                  ..+.+|+.+++++|.++.+|.. |.++.+|+.+ +|
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence                                                        0266788888888778887765 7777777777 22


Q ss_pred             -------c----cccCCc-EEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCcchh-cccCCce
Q 048809          349 -------P----ILSRLE-ELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLS-FFKMLQR  415 (878)
Q Consensus       349 -------~----~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~  415 (878)
                             .    ++.+|+ .+.+.. .+.            ......+.++++|+.+++..+....++.... .+++|+.
T Consensus       259 ~ni~~I~~~aF~~~~~L~~~l~l~~-~l~------------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          259 HNLKTIGQRVFSNCGRLAGTLELPA-SVT------------AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             TTCCEECTTTTTTCTTCCEEEEECT-TCC------------EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred             cccceehHHHhhCChhccEEEEEcc-cce------------EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence                   2    556666 666654 222            1223556677778888877777766665432 5556655


Q ss_pred             EE
Q 048809          416 YR  417 (878)
Q Consensus       416 L~  417 (878)
                      +.
T Consensus       326 ly  327 (329)
T 3sb4_A          326 IY  327 (329)
T ss_dssp             EE
T ss_pred             hc
Confidence            43

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.63  E-value=1.2e-07  Score=100.97  Aligned_cols=211  Identities=13%  Similarity=0.114  Sum_probs=119.7

Q ss_pred             CCCchhhcC--------CCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCC--
Q 048809          263 KIPDNFFTG--------MTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSD--  329 (878)
Q Consensus       263 ~l~~~~~~~--------l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~--  329 (878)
                      .+|+..|..        +.+|+.|+|.+ .++.++ ..|.+|++|+.|++.++.+..+  ..|..+.++..+......  
T Consensus        83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~  161 (329)
T 3sb4_A           83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY  161 (329)
T ss_dssp             EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred             ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh
Confidence            677788888        99999999998 888886 4578899999999999887655  667777777777655421  


Q ss_pred             --cccch-HhhcccccCccc--------ccc-------cccCCcEEEccCCCCCccccccccccccccCccccc-CCCCC
Q 048809          330 --MKELV-GEIGQLTQLRLL--------IAP-------ILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN-NLSKL  390 (878)
Q Consensus       330 --l~~lp-~~i~~L~~L~~L--------ip~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~l~~L  390 (878)
                        ...+. ..+.+..+|+..        ++.       ...++..+.+.+....             .....+. .+++|
T Consensus       162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-------------~~~~~l~~~~~~L  228 (329)
T 3sb4_A          162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-------------ADFKLIRDYMPNL  228 (329)
T ss_dssp             HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-------------HHHHHHHHHCTTC
T ss_pred             hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-------------HHHHHHHHhcCCC
Confidence              11111 113333333311        000       2333444443332110             0111111 25677


Q ss_pred             CEEEeecCCCCCCCcchh-cccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccc-eEEecCc
Q 048809          391 TSLEILIQDEKTLPRDLS-FFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIK-DLCLGGS  468 (878)
Q Consensus       391 ~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~-~L~l~~~  468 (878)
                      +.++++.+....+|.... .+.+|+.+.+...                        ...+....+..+++|+ .+.+.+ 
T Consensus       229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n------------------------i~~I~~~aF~~~~~L~~~l~l~~-  283 (329)
T 3sb4_A          229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN------------------------LKTIGQRVFSNCGRLAGTLELPA-  283 (329)
T ss_dssp             CEEECTTBCCCEECTTTTTTCTTCCEEECCTT------------------------CCEECTTTTTTCTTCCEEEEECT-
T ss_pred             eEEECCCCCcceecHhhhhCCCCCCEEECCcc------------------------cceehHHHhhCChhccEEEEEcc-
Confidence            777777777766665533 5666777665311                        1112223344567777 787765 


Q ss_pred             CCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceee
Q 048809          469 LDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLL  521 (878)
Q Consensus       469 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~  521 (878)
                       .+..+.+.. ...+++|+.+++.+. .++.+...      ....+++|+.+.
T Consensus       284 -~l~~I~~~a-F~~c~~L~~l~l~~n-~i~~I~~~------aF~~~~~L~~ly  327 (329)
T 3sb4_A          284 -SVTAIEFGA-FMGCDNLRYVLATGD-KITTLGDE------LFGNGVPSKLIY  327 (329)
T ss_dssp             -TCCEECTTT-TTTCTTEEEEEECSS-CCCEECTT------TTCTTCCCCEEE
T ss_pred             -cceEEchhh-hhCCccCCEEEeCCC-ccCccchh------hhcCCcchhhhc
Confidence             333333222 246788999998653 46666432      445567777765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.54  E-value=1.4e-07  Score=101.55  Aligned_cols=101  Identities=22%  Similarity=0.194  Sum_probs=83.6

Q ss_pred             cEEEeecC-CCCCCCchhhcCCCCCcEEEeeC-CCCCCCC-ccccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEee
Q 048809          252 KYFRIHND-HSLKIPDNFFTGMTELRVLDFTR-MHLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALR  326 (878)
Q Consensus       252 r~L~l~~~-~~~~l~~~~~~~l~~Lr~L~Ls~-~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~  326 (878)
                      ..++++++ .+..+|.  +..+.+|++|+|++ |.+..+| ..|+.|.+|++|+|++|.++.+  ..|++|.+|++|+|+
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688887 8999998  69999999999996 9999887 6799999999999999999865  578999999999999


Q ss_pred             CCCcccchHhhcccccCcccccccccCCcEEEccCCCCC
Q 048809          327 GSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIE  365 (878)
Q Consensus       327 ~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~  365 (878)
                      +|.++.+|..+....           .|+.|++.+|.+.
T Consensus        89 ~N~l~~~~~~~~~~~-----------~L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGL-----------SLQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSC-----------CCCEEECCSSCCC
T ss_pred             CCccceeCHHHcccC-----------CceEEEeeCCCcc
Confidence            999999887643211           2566677777654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.36  E-value=5.4e-06  Score=90.30  Aligned_cols=222  Identities=14%  Similarity=0.148  Sum_probs=111.7

Q ss_pred             CccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEee
Q 048809          250 QLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALR  326 (878)
Q Consensus       250 ~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~  326 (878)
                      +|+.+.+..+ +..++...|..+ +|+.+.+.. .++.++ ..|.+|.+|+.+++.+|.++.+  ..+. ..+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            4555555443 445555555553 455555554 444443 3455556666666655555544  2233 3555555555


Q ss_pred             CCCcccchHh-hcccccCccc-ccc----------cccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEE
Q 048809          327 GSDMKELVGE-IGQLTQLRLL-IAP----------ILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLE  394 (878)
Q Consensus       327 ~~~l~~lp~~-i~~L~~L~~L-ip~----------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~  394 (878)
                      .+ ++.++.. |.++.+|+.+ +|.          .-.+|+.+.+..+ +.            ......+.++++|+.+.
T Consensus       212 ~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~-i~------------~I~~~aF~~c~~L~~l~  277 (401)
T 4fdw_A          212 VT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNG-VT------------NIASRAFYYCPELAEVT  277 (401)
T ss_dssp             TT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETT-CC------------EECTTTTTTCTTCCEEE
T ss_pred             Cc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCC-cc------------EEChhHhhCCCCCCEEE
Confidence            32 4444432 5555555555 222          1145556655322 11            12235567778888888


Q ss_pred             eecCCCC-----CCCcc-hhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhhccccceEEecCc
Q 048809          395 ILIQDEK-----TLPRD-LSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQLKGIKDLCLGGS  468 (878)
Q Consensus       395 l~~~~~~-----~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~  468 (878)
                      +..+...     .++.. +..+.+|+.+.+..                        +...+....+..+.+|+.+.+...
T Consensus       278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~------------------------~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE------------------------SIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             EESSCCCCCTTCEECTTTTTTCTTCCEECCCT------------------------TCCEECTTTTTTCCSCCEEEECTT
T ss_pred             eCCccccCCcccEECHHHhhCCccCCeEEeCC------------------------ceEEEhhhhhcCCCCccEEEECcc
Confidence            8776543     23332 33566677666520                        011122223344677888888532


Q ss_pred             CCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCccc-ccceeeccc
Q 048809          469 LDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFP-VLESLLLRH  524 (878)
Q Consensus       469 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-~L~~L~L~~  524 (878)
                        +..+..... ..+ +|+.+.+.+.. ...+...      ....++ ++..|.+..
T Consensus       334 --l~~I~~~aF-~~~-~L~~l~l~~n~-~~~l~~~------~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          334 --VTQINFSAF-NNT-GIKEVKVEGTT-PPQVFEK------VWYGFPDDITVIRVPA  379 (401)
T ss_dssp             --CCEECTTSS-SSS-CCCEEEECCSS-CCBCCCS------SCCCSCTTCCEEEECG
T ss_pred             --ccEEcHHhC-CCC-CCCEEEEcCCC-Ccccccc------cccCCCCCccEEEeCH
Confidence              333322222 345 89999997753 2332221      223343 566777654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.36  E-value=1.9e-07  Score=87.30  Aligned_cols=91  Identities=14%  Similarity=0.116  Sum_probs=51.3

Q ss_pred             CCccEEEEccCCCcccccCcccccCCCcEEEecccCCceEeechhhhh---hhccceEEEEccccccccccccccccccc
Q 048809          708 NNLEVLEIYGCDNLINLVPSSTSFQNLTTVAVDFCYGMINILTSSTAK---SLVRLKQMKIFHCKMITEIVVDDDEEGDN  784 (878)
Q Consensus       708 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~---~l~~L~~L~i~~C~~l~~~~~~~~~~~~~  784 (878)
                      ..|++|++++|.....-...+..+++|++|++++|..+++.....+..   .+++|++|+|++|+++++....       
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-------  133 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-------  133 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-------
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-------
Confidence            457788888776222223334567777777777777777653333332   1346777777777766654211       


Q ss_pred             cccccccccccchhhccccCcccce
Q 048809          785 YAANYEIVFSELKELRLSSLESLTS  809 (878)
Q Consensus       785 ~~~~~~~~~~~L~~L~l~~c~~L~~  809 (878)
                          .+..+++|++|+|++|+.+++
T Consensus       134 ----~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          134 ----ALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             ----HGGGCTTCCEEEEESCTTCCC
T ss_pred             ----HHhcCCCCCEEECCCCCCCCc
Confidence                112345555555555555554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.35  E-value=5.3e-06  Score=90.33  Aligned_cols=260  Identities=11%  Similarity=0.094  Sum_probs=168.0

Q ss_pred             ccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccc
Q 048809          514 FPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDES  593 (878)
Q Consensus       514 ~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  593 (878)
                      +..++.+.+.+  .++.+....+  .. .+|+.+.+.+  +++.+... .+.++ +|+.+.+.+  .+..+....     
T Consensus       112 ~~~l~~i~ip~--~i~~I~~~aF--~~-~~L~~i~l~~--~i~~I~~~-aF~~~-~L~~i~lp~--~l~~I~~~a-----  175 (401)
T 4fdw_A          112 LKGYNEIILPN--SVKSIPKDAF--RN-SQIAKVVLNE--GLKSIGDM-AFFNS-TVQEIVFPS--TLEQLKEDI-----  175 (401)
T ss_dssp             CSSCSEEECCT--TCCEECTTTT--TT-CCCSEEECCT--TCCEECTT-TTTTC-CCCEEECCT--TCCEECSST-----
T ss_pred             cCCccEEEECC--ccCEehHhhc--cc-CCccEEEeCC--CccEECHH-hcCCC-CceEEEeCC--CccEehHHH-----
Confidence            45666666653  4454533322  23 3688888765  46666553 33443 688888775  455554332     


Q ss_pred             cCCCCccccccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecccccc
Q 048809          594 SNSNTQVIELTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGYDYDG  672 (878)
Q Consensus       594 ~~~~~~~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c~~~~  672 (878)
                            +..+++|+.+.+.+ .+++.++....  .+.+|+.+.+.+  +++ ++...+.+    +++|+.+.+.++    
T Consensus       176 ------F~~c~~L~~l~l~~-n~l~~I~~~aF--~~~~L~~l~lp~--~l~~I~~~aF~~----~~~L~~l~l~~~----  236 (401)
T 4fdw_A          176 ------FYYCYNLKKADLSK-TKITKLPASTF--VYAGIEEVLLPV--TLKEIGSQAFLK----TSQLKTIEIPEN----  236 (401)
T ss_dssp             ------TTTCTTCCEEECTT-SCCSEECTTTT--TTCCCSEEECCT--TCCEECTTTTTT----CTTCCCEECCTT----
T ss_pred             ------hhCcccCCeeecCC-CcceEechhhE--eecccCEEEeCC--chheehhhHhhC----CCCCCEEecCCC----
Confidence                  23478888888876 35777776533  357888888863  466 77777777    888888877653    


Q ss_pred             cceeeeccccccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccccC-cccccCCCcEEEecccC----CceE
Q 048809          673 EELFETVENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINLVP-SSTSFQNLTTVAVDFCY----GMIN  747 (878)
Q Consensus       673 ~~~~~~~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~----~l~~  747 (878)
                                             ++.+....|.+ ++|+.+.+.+  .++.++. .+..+++|+.+.+.+..    .++.
T Consensus       237 -----------------------l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~  290 (401)
T 4fdw_A          237 -----------------------VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAM  290 (401)
T ss_dssp             -----------------------CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred             -----------------------ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccE
Confidence                                   23444556666 7899999953  3555533 45678999999997621    1123


Q ss_pred             eechhhhhhhccceEEEEccccccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEE
Q 048809          748 ILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLV  827 (878)
Q Consensus       748 l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~  827 (878)
                      + ....|.+|++|+.+.+.+  .++.+....           ...+++|+.+.|.+  +++.+...  ....+ +|+.+.
T Consensus       291 I-~~~aF~~c~~L~~l~l~~--~i~~I~~~a-----------F~~c~~L~~l~lp~--~l~~I~~~--aF~~~-~L~~l~  351 (401)
T 4fdw_A          291 I-HPYCLEGCPKLARFEIPE--SIRILGQGL-----------LGGNRKVTQLTIPA--NVTQINFS--AFNNT-GIKEVK  351 (401)
T ss_dssp             E-CTTTTTTCTTCCEECCCT--TCCEECTTT-----------TTTCCSCCEEEECT--TCCEECTT--SSSSS-CCCEEE
T ss_pred             E-CHHHhhCCccCCeEEeCC--ceEEEhhhh-----------hcCCCCccEEEECc--cccEEcHH--hCCCC-CCCEEE
Confidence            4 456778899999999973  477765432           23468889888853  58888655  35567 999999


Q ss_pred             EcCCCCcccccCCC-ccC-CCcceeeccc
Q 048809          828 VEDCPNMSIFSGGE-LST-PNLRKVQLKQ  854 (878)
Q Consensus       828 i~~C~~L~~lp~~~-~~~-~~L~~l~i~~  854 (878)
                      +.+. .+..++.+. ..+ .+++.|++..
T Consensus       352 l~~n-~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          352 VEGT-TPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             ECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             EcCC-CCcccccccccCCCCCccEEEeCH
Confidence            9886 445555432 233 4788888864

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.33  E-value=1.1e-07  Score=88.93  Aligned_cols=95  Identities=14%  Similarity=0.249  Sum_probs=69.9

Q ss_pred             cCCCcEEEecccCCceEeechhhhhhhccceEEEEccccccccccccccccccccccccccccccchhhccccCccccee
Q 048809          731 FQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSF  810 (878)
Q Consensus       731 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l  810 (878)
                      -..|+.|++++|. +++..... +.++++|++|++++|..+++..-..       ........++|++|+|++|+++++-
T Consensus        60 ~~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~-------L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           60 KYKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLER-------LSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             CCCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHH-------HHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             CceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHH-------HHhcccccCCCCEEEcCCCCcCCHH
Confidence            3579999999997 77654333 3689999999999999887753211       0000001468999999999999986


Q ss_pred             eccccceeEcCCcceEEEcCCCCccc
Q 048809          811 CSVNNCAFKFPSLERLVVEDCPNMSI  836 (878)
Q Consensus       811 ~~~~~~~~~l~sL~~L~i~~C~~L~~  836 (878)
                      ...  .+..+++|++|++++||+++.
T Consensus       131 Gl~--~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          131 GII--ALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHH--HGGGCTTCCEEEEESCTTCCC
T ss_pred             HHH--HHhcCCCCCEEECCCCCCCCc
Confidence            543  245689999999999999885

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.32  E-value=6.1e-08  Score=104.65  Aligned_cols=158  Identities=13%  Similarity=0.066  Sum_probs=110.1

Q ss_pred             ccCCCcEEEeeCCCCCCCC-----CCC--CCCCccEEEeecCCCCCC-CchhhcCCCCCcEEEeeCCCCCCC-----Ccc
Q 048809          225 VLKDCTAISLNNSNINELP-----QGF--ECPQLKYFRIHNDHSLKI-PDNFFTGMTELRVLDFTRMHLLAL-----PSS  291 (878)
Q Consensus       225 ~~~~lr~l~l~~~~~~~l~-----~~~--~~~~Lr~L~l~~~~~~~l-~~~~~~~l~~Lr~L~Ls~~~i~~l-----p~~  291 (878)
                      +.+.++.+++++|.++...     ..+  ..++|++|++++|.+... ...++..+++|++|+|++|.+...     ...
T Consensus        70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            4567999999999886422     111  236999999999976532 123344567899999999998532     222


Q ss_pred             c-cCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEeeCCCcccc-----hHhhcccccCcccccccccCCcEEEc
Q 048809          292 L-GLLQNLQTLSLDYCELGD-----M-AIIGDLKKLVILALRGSDMKEL-----VGEIGQLTQLRLLIAPILSRLEELYI  359 (878)
Q Consensus       292 i-~~L~~L~~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~~l-----p~~i~~L~~L~~Lip~~l~~L~~L~l  359 (878)
                      + ...++|++|+|++|.++.     + ..+...++|++|+|++|.+...     +..+.           ..++|+.|++
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-----------~~~~L~~L~L  218 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD-----------RNRQLQELNV  218 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG-----------GCSCCCEEEC
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh-----------cCCCcCeEEC
Confidence            3 356889999999999864     2 4457889999999999987642     22233           2346788899


Q ss_pred             cCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCC
Q 048809          360 GESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEK  401 (878)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~  401 (878)
                      ++|.+..        .........+...++|+.|++++|.+.
T Consensus       219 s~N~i~~--------~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          219 AYNGAGD--------TAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             CSSCCCH--------HHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             CCCCCCH--------HHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            9887761        111233455667788999999998765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.28  E-value=3.1e-05  Score=84.50  Aligned_cols=97  Identities=13%  Similarity=0.222  Sum_probs=47.3

Q ss_pred             CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCC-------------------
Q 048809          247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYC-------------------  306 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~-------------------  306 (878)
                      .+.+|+.+.+.. .+..|++..|.++.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+                   
T Consensus        69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~  146 (394)
T 4fs7_A           69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITI  146 (394)
T ss_dssp             TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEEC
T ss_pred             CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccccc
Confidence            455566665543 244555555566666666665433 33332 23444444544443221                   


Q ss_pred             --CCCCc--ccccCcccCcEEEeeCCCcccchH-hhcccccCccc
Q 048809          307 --ELGDM--AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLL  346 (878)
Q Consensus       307 --~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L  346 (878)
                        .+..+  ..+.++.+|+.+.+.++ +..++. .|.+..+|+.+
T Consensus       147 ~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i  190 (394)
T 4fs7_A          147 PEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSI  190 (394)
T ss_dssp             CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBC
T ss_pred             CccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEE
Confidence              01111  34556667777776554 233333 25555555555

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.25  E-value=1.6e-05  Score=86.85  Aligned_cols=66  Identities=9%  Similarity=0.098  Sum_probs=47.8

Q ss_pred             CCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeC
Q 048809          260 HSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRG  327 (878)
Q Consensus       260 ~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~  327 (878)
                      .+..|.+..|..+.+|+.+.+.. .++.++ ..|.++.+|+.+++..+ ++.+  ..+.++.+|+.+.+..
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~  126 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL  126 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence            35567778899999999999974 477775 45788899999988654 5544  5566677776665544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.98  E-value=8.3e-07  Score=95.73  Aligned_cols=128  Identities=14%  Similarity=0.084  Sum_probs=95.2

Q ss_pred             CCCcEEEeeCCCCCCC--CCCC-CCCCccEEEeecCCCCCCCchhh-----cCCCCCcEEEeeCCCCCC-----CCcccc
Q 048809          227 KDCTAISLNNSNINEL--PQGF-ECPQLKYFRIHNDHSLKIPDNFF-----TGMTELRVLDFTRMHLLA-----LPSSLG  293 (878)
Q Consensus       227 ~~lr~l~l~~~~~~~l--~~~~-~~~~Lr~L~l~~~~~~~l~~~~~-----~~l~~Lr~L~Ls~~~i~~-----lp~~i~  293 (878)
                      .+++.|++++|.+...  .... .+++|++|++++|.+.......+     ....+|++|+|++|.+..     ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            4689999999987642  1111 45689999999997765433333     356889999999999853     566678


Q ss_pred             CCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEeeCCCcccch-----HhhcccccCcccccccccCCcEEEccCC
Q 048809          294 LLQNLQTLSLDYCELGD-----M-AIIGDLKKLVILALRGSDMKELV-----GEIGQLTQLRLLIAPILSRLEELYIGES  362 (878)
Q Consensus       294 ~L~~L~~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~~lp-----~~i~~L~~L~~Lip~~l~~L~~L~l~~~  362 (878)
                      .+++|++|+|++|.+..     + ..+...++|++|++++|.++...     ..+.           ..++|+.|++++|
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~-----------~~~~L~~L~Ls~N  249 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR-----------EHPSLELLHLYFN  249 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH-----------HCSSCCEEECTTS
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH-----------hCCCCCEEeccCC
Confidence            89999999999999874     2 55677889999999999886532     2222           3356788899999


Q ss_pred             CCC
Q 048809          363 PIE  365 (878)
Q Consensus       363 ~~~  365 (878)
                      .+.
T Consensus       250 ~i~  252 (372)
T 3un9_A          250 ELS  252 (372)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.81  E-value=3.6e-05  Score=82.12  Aligned_cols=137  Identities=16%  Similarity=0.132  Sum_probs=66.4

Q ss_pred             ccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc--cccccc-ccccccccceeEEEEecccccccceeeec
Q 048809          603 LTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK--FKSTIH-ESTKKRFHTIKVLCIEGYDYDGEELFETV  679 (878)
Q Consensus       603 ~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~--lp~~~~-~~~~~~l~~L~~L~l~~c~~~~~~~~~~~  679 (878)
                      +|+|++|.++++..+. ++.    ...++|++|++..|. +.  ....+. ..    +|+|+.|+++.+...        
T Consensus       171 ~P~L~~L~L~g~~~l~-l~~----~~~~~L~~L~L~~~~-l~~~~l~~l~~~~----lp~L~~L~L~~~~~~--------  232 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNLS-IGK----KPRPNLKSLEIISGG-LPDSVVEDILGSD----LPNLEKLVLYVGVED--------  232 (362)
T ss_dssp             CTTCCEEEEECCBTCB-CCS----CBCTTCSEEEEECSB-CCHHHHHHHHHSB----CTTCCEEEEECBCGG--------
T ss_pred             CCCCcEEEEeCCCCce-ecc----ccCCCCcEEEEecCC-CChHHHHHHHHcc----CCCCcEEEEeccccc--------
Confidence            6677777776653221 111    136778888877654 33  111111 12    778888877643220        


Q ss_pred             cccccceeeccCCCCchhhhcccc-ccccCCccEEEEccCCCcccccCc---ccccCCCcEEEecccCCceEeechhh--
Q 048809          680 ENGVNAMIKGINFHPDLKQILKQE-SSHANNLEVLEIYGCDNLINLVPS---STSFQNLTTVAVDFCYGMINILTSST--  753 (878)
Q Consensus       680 ~~~~~l~~l~l~~~~~l~~i~~~~-~~~l~~L~~L~l~~c~~l~~l~~~---~~~l~~L~~L~i~~c~~l~~l~~~~~--  753 (878)
                                ......+..+.... ...+++|+.|.+.+|.........   ...+++|++|+++. +.+++.....+  
T Consensus       233 ----------~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~  301 (362)
T 2ra8_A          233 ----------YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLD  301 (362)
T ss_dssp             ----------GTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHT
T ss_pred             ----------cccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHh
Confidence                      00011111111000 023567777777776643221111   12466777777754 45555322112  


Q ss_pred             -hhhhccceEEEEccc
Q 048809          754 -AKSLVRLKQMKIFHC  768 (878)
Q Consensus       754 -~~~l~~L~~L~i~~C  768 (878)
                       +.++++|+.|++++|
T Consensus       302 ~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          302 HVDKIKHLKFINMKYN  317 (362)
T ss_dssp             THHHHTTCSEEECCSB
T ss_pred             hcccCCcceEEECCCC
Confidence             245677777777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.70  E-value=4.4e-05  Score=81.47  Aligned_cols=138  Identities=21%  Similarity=0.144  Sum_probs=66.9

Q ss_pred             hhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCC--ccccc--CcccCcEEEeeCC--CcccchHhhccc
Q 048809          267 NFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGD--MAIIG--DLKKLVILALRGS--DMKELVGEIGQL  340 (878)
Q Consensus       267 ~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~--l~~i~--~L~~L~~L~l~~~--~l~~lp~~i~~L  340 (878)
                      .++..+++|+.|+|+++.-..+|. +. +.+|++|++..|.+..  +..++  ++++|++|+|+.+  ....-    ..+
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~----~~~  239 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD----GDM  239 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC----SCG
T ss_pred             HHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc----hhH
Confidence            345666777777777663233443 33 6677777777666542  23333  5677777776532  10000    001


Q ss_pred             ccCccccc-ccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCC-----CCcchhcccCCc
Q 048809          341 TQLRLLIA-PILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKT-----LPRDLSFFKMLQ  414 (878)
Q Consensus       341 ~~L~~Lip-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~  414 (878)
                      ..+..++. ..+++|+.|.+.+|.+.-.        . ...+..-..+++|+.|+++.|.+..     ++..+..+++|+
T Consensus       240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~--------~-~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~  310 (362)
T 2ra8_A          240 NVFRPLFSKDRFPNLKWLGIVDAEEQNV--------V-VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK  310 (362)
T ss_dssp             GGTGGGSCTTTCTTCCEEEEESCTTHHH--------H-HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred             HHHHHHHhcCCCCCcCEEeCCCCCCchH--------H-HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence            11111111 1345666666666544300        0 0011111245667777776665432     222333566677


Q ss_pred             eEEEE
Q 048809          415 RYRIL  419 (878)
Q Consensus       415 ~L~l~  419 (878)
                      .|+++
T Consensus       311 ~L~L~  315 (362)
T 2ra8_A          311 FINMK  315 (362)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            77664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.57  E-value=0.0019  Score=70.13  Aligned_cols=31  Identities=23%  Similarity=0.289  Sum_probs=15.2

Q ss_pred             ccEEEeecCCCCCCCchhhcCCCCCcEEEeeC
Q 048809          251 LKYFRIHNDHSLKIPDNFFTGMTELRVLDFTR  282 (878)
Q Consensus       251 Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~  282 (878)
                      |+.+.+..+ +..|.+..|.++.+|+.+.+..
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~   96 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQD   96 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGG
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecC
Confidence            455555432 3444444555555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.55  E-value=5.9e-05  Score=76.15  Aligned_cols=63  Identities=29%  Similarity=0.329  Sum_probs=48.4

Q ss_pred             cCCCCCcEEEeeCCCCCCC---CccccCCCCCcEEEccCCCCCCcccccCcc--cCcEEEeeCCCccc
Q 048809          270 TGMTELRVLDFTRMHLLAL---PSSLGLLQNLQTLSLDYCELGDMAIIGDLK--KLVILALRGSDMKE  332 (878)
Q Consensus       270 ~~l~~Lr~L~Ls~~~i~~l---p~~i~~L~~L~~L~L~~~~l~~l~~i~~L~--~L~~L~l~~~~l~~  332 (878)
                      .++++|+.|+|++|.+..+   |..+..+++|++|+|++|.++.+..+..+.  +|++|++++|.+..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc
Confidence            5677888888888888654   355678888888888888888765566655  88888888887653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.52  E-value=4.8e-05  Score=76.80  Aligned_cols=77  Identities=25%  Similarity=0.371  Sum_probs=60.4

Q ss_pred             CCCCccEEEeecCCCCCCCc--hhhcCCCCCcEEEeeCCCCCCCCccccCCC--CCcEEEccCCCCCC-c--------cc
Q 048809          247 ECPQLKYFRIHNDHSLKIPD--NFFTGMTELRVLDFTRMHLLALPSSLGLLQ--NLQTLSLDYCELGD-M--------AI  313 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~~--~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~--~L~~L~L~~~~l~~-l--------~~  313 (878)
                      .+++|++|++++|.+..++.  ..+..+++|++|+|++|.|..+ ..+..+.  +|++|+|++|.+.. +        ..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            57899999999998877653  4567899999999999999876 3455555  99999999999763 1        23


Q ss_pred             ccCcccCcEEE
Q 048809          314 IGDLKKLVILA  324 (878)
Q Consensus       314 i~~L~~L~~L~  324 (878)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            66777887776

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.49  E-value=0.0035  Score=68.05  Aligned_cols=97  Identities=16%  Similarity=0.249  Sum_probs=60.1

Q ss_pred             CcEEEeeCCCCCCCCCCC--CCCCccEEEeecC---CCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEE
Q 048809          229 CTAISLNNSNINELPQGF--ECPQLKYFRIHND---HSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLS  302 (878)
Q Consensus       229 lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~---~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~  302 (878)
                      ++.+.+.. .++.|....  .+.+|+.+.+..+   .+..+....|..+.+|+.+.+..+ ++.++ ..+..+.+|+.+.
T Consensus        66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~  143 (394)
T 4gt6_A           66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT  143 (394)
T ss_dssp             CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred             CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence            56666653 355555443  6778888888765   356677777777777777666543 44443 3456777777777


Q ss_pred             ccCCCCCCc--ccccCcccCcEEEeeCC
Q 048809          303 LDYCELGDM--AIIGDLKKLVILALRGS  328 (878)
Q Consensus       303 L~~~~l~~l--~~i~~L~~L~~L~l~~~  328 (878)
                      +... +..+  ..+..+.+|+.+.+..+
T Consensus       144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          144 IPEG-VTSVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEEECCTT
T ss_pred             ccce-eeeecccceecccccccccccce
Confidence            7543 3332  45666667777766543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.49  E-value=3.3e-05  Score=74.06  Aligned_cols=113  Identities=14%  Similarity=0.157  Sum_probs=58.2

Q ss_pred             hcCCCCCcEEEeeCC-CCC-----CCCccccCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEeeCCCccc----
Q 048809          269 FTGMTELRVLDFTRM-HLL-----ALPSSLGLLQNLQTLSLDYCELGD-----M-AIIGDLKKLVILALRGSDMKE----  332 (878)
Q Consensus       269 ~~~l~~Lr~L~Ls~~-~i~-----~lp~~i~~L~~L~~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~~----  332 (878)
                      +...+.|++|+|++| .+.     .+...+...++|++|+|++|.+.+     + ..+...++|++|+|++|.+..    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            455566666666666 553     234445555666666666666553     1 334444566666666665543    


Q ss_pred             -chHhhcccccCcccccccccCCcEEEc--cCCCCCccccccccccccccCcccccCCCCCCEEEeecCCC
Q 048809          333 -LVGEIGQLTQLRLLIAPILSRLEELYI--GESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDE  400 (878)
Q Consensus       333 -lp~~i~~L~~L~~Lip~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~  400 (878)
                       +...+.           ..++|+.|++  .+|.+.        ..........+...++|+.|++++|.+
T Consensus       112 ~l~~~L~-----------~n~~L~~L~L~~~~N~i~--------~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          112 ALVEALQ-----------SNTSLIELRIDNQSQPLG--------NNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHGGG-----------GCSSCCEEECCCCSSCCC--------HHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHH-----------hCCCceEEEecCCCCCCC--------HHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence             111121           1234555566  445443        111112334455556777777776643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.29  E-value=5e-05  Score=72.80  Aligned_cols=103  Identities=18%  Similarity=0.217  Sum_probs=51.6

Q ss_pred             CCcEEEeeCC-CCCC-----CCCCC-CCCCccEEEeecCCCCCCC----chhhcCCCCCcEEEeeCCCCCC-----CCcc
Q 048809          228 DCTAISLNNS-NINE-----LPQGF-ECPQLKYFRIHNDHSLKIP----DNFFTGMTELRVLDFTRMHLLA-----LPSS  291 (878)
Q Consensus       228 ~lr~l~l~~~-~~~~-----l~~~~-~~~~Lr~L~l~~~~~~~l~----~~~~~~l~~Lr~L~Ls~~~i~~-----lp~~  291 (878)
                      ++++|++++| .+..     +...+ ..++|++|++++|.+..-.    ...+...+.|++|+|++|.|..     +...
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~  116 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA  116 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence            4666666666 5442     11111 3455666666666443211    1112444556666666665532     3444


Q ss_pred             ccCCCCCcEEEc--cCCCCCC-----c-ccccCcccCcEEEeeCCCc
Q 048809          292 LGLLQNLQTLSL--DYCELGD-----M-AIIGDLKKLVILALRGSDM  330 (878)
Q Consensus       292 i~~L~~L~~L~L--~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l  330 (878)
                      +...++|++|+|  ++|.+..     + ..+...++|++|++++|.+
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            555556666666  5555542     2 3344445566666665544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.56  E-value=0.092  Score=56.33  Aligned_cols=71  Identities=17%  Similarity=0.192  Sum_probs=41.5

Q ss_pred             hccccccccCCccEEEEccCCCcccccC-cccccCCCcEEEecccCCceEeechhhhhhhccceEEEEcccccccccc
Q 048809          699 ILKQESSHANNLEVLEIYGCDNLINLVP-SSTSFQNLTTVAVDFCYGMINILTSSTAKSLVRLKQMKIFHCKMITEIV  775 (878)
Q Consensus       699 i~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~  775 (878)
                      +....+.++.+|+.+.+..  .+..++. .+..+++|+.+.+.+ ..++.+ ....|.+|++|+.+.|..  .++.+.
T Consensus       254 I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I-~~~aF~~c~~L~~i~lp~--~l~~I~  325 (379)
T 4h09_A          254 IGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETL-EPRVFMDCVKLSSVTLPT--ALKTIQ  325 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEE-CTTTTTTCTTCCEEECCT--TCCEEC
T ss_pred             eCccccceeehhccccccc--cceeccccccccccccccccccc-ccccee-hhhhhcCCCCCCEEEcCc--cccEEH
Confidence            3344555667777777743  2444433 235667788877765 456666 344556777788777742  344443

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.51  E-value=0.036  Score=58.75  Aligned_cols=171  Identities=13%  Similarity=0.091  Sum_probs=96.6

Q ss_pred             CCcEEEEEeCChHHhhc----------cCCC-CccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcch
Q 048809            2 GGCKVLLTARSHDVLSS----------KMDC-QKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIA   70 (878)
Q Consensus         2 ~gs~iivTtR~~~v~~~----------~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla   70 (878)
                      ++.++|+|++...+...          ..+. ...+++.+|+.+|+.+++....+..... --.+.+.+|++.++|.|++
T Consensus       163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~~tgG~P~~  241 (350)
T 2qen_A          163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVELLDGIPGW  241 (350)
T ss_dssp             TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHTTCHHH
T ss_pred             CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHH
Confidence            35689999987653211          0111 2478999999999999998865211111 1235678999999999999


Q ss_pred             HHHHHHHHhcCCChHHH-HHHHHHHHccCcchhhhhhhhhcccccCCCCCChHHHHHHHhhhcccCCccHHHHHHHHh-h
Q 048809           71 ILPVAKALKNKSSLYVW-KDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSYIRNVKDLLYHGM-G  148 (878)
Q Consensus        71 ~~~~g~~l~~~~~~~~w-~~~l~~l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp~~~~~~li~~w~-~  148 (878)
                      +..++..+....+...| ..+.+..... ....+.   .+.+ + ++      ..+..+..+|.-+ ....++..... +
T Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~---~l~~-~-~~------~~~~~l~~la~g~-~~~~~l~~~~~~~  308 (350)
T 2qen_A          242 LVVFGVEYLRNGDFGRAMKRTLEVAKGL-IMGELE---ELRR-R-SP------RYVDILRAIALGY-NRWSLIRDYLAVK  308 (350)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHH---HHHH-H-CH------HHHHHHHHHHTTC-CSHHHHHHHHHHT
T ss_pred             HHHHHHHHhccccHhHHHHHHHHHHHHH-HHHHHH---HHHh-C-Ch------hHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence            99998765432222222 1111111000 000111   1222 2 56      8888888888722 23344444321 1


Q ss_pred             ccCccCCCcHHHHHHHHHHHHHHHHhccccccccCCccee-hhHHHHHH
Q 048809          149 LGLFQNINTVDEARDRAHTLVDKLKNSCLLLGGWRSEWFS-MHDVVRDV  196 (878)
Q Consensus       149 ~g~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~-mhdli~~~  196 (878)
                      .|    +.+..++.    ++++.|++.+++...+  +.|. .|.+++++
T Consensus       309 ~~----~~~~~~~~----~~l~~L~~~gli~~~~--~~y~~~~p~~~~~  347 (350)
T 2qen_A          309 GT----KIPEPRLY----ALLENLKKMNWIVEED--NTYKIADPVVATV  347 (350)
T ss_dssp             TC----CCCHHHHH----HHHHHHHHTTSEEEET--TEEEESSHHHHHH
T ss_pred             hC----CCCHHHHH----HHHHHHHhCCCEEecC--CEEEEecHHHHHH
Confidence            11    11223333    4889999999997652  3455 46777655

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=96.48  E-value=0.021  Score=60.78  Aligned_cols=169  Identities=9%  Similarity=0.047  Sum_probs=98.6

Q ss_pred             CCcEEEEEeCChHHhhc----------cCCC-CccEEcCCCChHHHHHHHHHHhCC-CCCChhhHHHHHHHHHHcCCCcc
Q 048809            2 GGCKVLLTARSHDVLSS----------KMDC-QKNIFVDVLNAKEAWSLFEKMTGD-CIENGELKSVATEIVKECAGLPI   69 (878)
Q Consensus         2 ~gs~iivTtR~~~v~~~----------~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~g~Pl   69 (878)
                      ++.++|+|+|.......          ..+. ...+.+.+|+.+|+.+++...++. .......    .+|++.|+|.|+
T Consensus       169 ~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~  244 (357)
T 2fna_A          169 KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPG  244 (357)
T ss_dssp             TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHH
T ss_pred             CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHH
Confidence            35689999998654221          0111 357899999999999999986521 1111111    789999999999


Q ss_pred             hHHHHHHHHhcCCChHHHHH-HHHHHHccCcchhhhhhh-hhccc--ccCCCCCChHHHHHHHhhhcccCCccHHHHHHH
Q 048809           70 AILPVAKALKNKSSLYVWKD-ALRQLKNKSLLGAAYSSL-ELSYY--HLEDEDLGGEELRKTFLLIGYSYIRNVKDLLYH  145 (878)
Q Consensus        70 a~~~~g~~l~~~~~~~~w~~-~l~~l~~~~~~~~~~~~l-~~sy~--~L~~~~~~~~~~k~cf~~~~~fp~~~~~~li~~  145 (878)
                      ++..++..+....+...|-. +.+....     .+..-+ .+.|+  .||+      ..+..+..+|.-+  ....+...
T Consensus       245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~l~~------~~~~~l~~la~g~--~~~~l~~~  311 (357)
T 2fna_A          245 WLTYFGFIYLDNKNLDFAINQTLEYAKK-----LILKEFENFLHGREIARK------RYLNIMRTLSKCG--KWSDVKRA  311 (357)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHH-----HHHHHHHHHHTTCGGGHH------HHHHHHHHHTTCB--CHHHHHHH
T ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHH-----HHHHHHHHHhhccccccH------HHHHHHHHHHcCC--CHHHHHHH
Confidence            99999987754333333321 1111100     111111 12221  6777      8899998888733  44444332


Q ss_pred             Hh-hccCccCCCcHHHHHHHHHHHHHHHHhccccccccCCccee-hhHHHHHH
Q 048809          146 GM-GLGLFQNINTVDEARDRAHTLVDKLKNSCLLLGGWRSEWFS-MHDVVRDV  196 (878)
Q Consensus       146 w~-~~g~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~~-mhdli~~~  196 (878)
                      .. ..|.   .-+..++.    ++++.|++.+++...+  +.|+ .|.++++.
T Consensus       312 ~~~~~g~---~~~~~~~~----~~L~~L~~~gli~~~~--~~y~f~~~~~~~~  355 (357)
T 2fna_A          312 LELEEGI---EISDSEIY----NYLTQLTKHSWIIKEG--EKYCPSEPLISLA  355 (357)
T ss_dssp             HHHHHCS---CCCHHHHH----HHHHHHHHTTSEEESS--SCEEESSHHHHHH
T ss_pred             HHHhcCC---CCCHHHHH----HHHHHHHhCCCEEecC--CEEEecCHHHHHh
Confidence            11 1121   01223333    4789999999997653  3455 57777764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.28  E-value=0.1  Score=56.05  Aligned_cols=112  Identities=13%  Similarity=0.175  Sum_probs=66.8

Q ss_pred             CCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCCCccccCCccEEEeecCCCcccccch
Q 048809          482 GFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPLAAESFCKVKDIRVEWCDKLKNVFPL  561 (878)
Q Consensus       482 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~  561 (878)
                      ...+|+.+.+..  .++.+...      ....+.+|+.+.+..  +++.+...  .+..+++|+.+.+.+ ..++.+...
T Consensus       238 ~~~~L~~i~lp~--~v~~I~~~------aF~~~~~l~~i~l~~--~i~~i~~~--aF~~c~~L~~i~l~~-~~i~~I~~~  304 (379)
T 4h09_A          238 GMKALDEIAIPK--NVTSIGSF------LLQNCTALKTLNFYA--KVKTVPYL--LCSGCSNLTKVVMDN-SAIETLEPR  304 (379)
T ss_dssp             TCSSCCEEEECT--TCCEECTT------TTTTCTTCCEEEECC--CCSEECTT--TTTTCTTCCEEEECC-TTCCEECTT
T ss_pred             CCccceEEEcCC--CccEeCcc------ccceeehhccccccc--cceecccc--ccccccccccccccc-cccceehhh
Confidence            356777777753  24444321      334466677777643  34444222  345677888888865 346666543


Q ss_pred             hhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCCcceecC
Q 048809          562 VIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQLTSFCT  622 (878)
Q Consensus       562 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~~~~  622 (878)
                       .+.++.+|+.+.+..  .++.+....           +..+.+|+.+.+.+  +++.+..
T Consensus       305 -aF~~c~~L~~i~lp~--~l~~I~~~a-----------F~~C~~L~~i~ip~--~v~~I~~  349 (379)
T 4h09_A          305 -VFMDCVKLSSVTLPT--ALKTIQVYA-----------FKNCKALSTISYPK--SITLIES  349 (379)
T ss_dssp             -TTTTCTTCCEEECCT--TCCEECTTT-----------TTTCTTCCCCCCCT--TCCEECT
T ss_pred             -hhcCCCCCCEEEcCc--cccEEHHHH-----------hhCCCCCCEEEECC--ccCEEch
Confidence             567888898888863  355554332           23478888888854  4666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.71  E-value=0.016  Score=51.31  Aligned_cols=52  Identities=12%  Similarity=0.274  Sum_probs=23.5

Q ss_pred             EEEeeCCCCC--CCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCC
Q 048809          231 AISLNNSNIN--ELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRM  283 (878)
Q Consensus       231 ~l~l~~~~~~--~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~  283 (878)
                      +++.+++.++  .+|..+ -++|++|+|++|.+..+|.++|..+.+|++|+|++|
T Consensus        12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            4445555554  444332 123444444444444444444444444444444444

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=95.33  E-value=0.057  Score=58.72  Aligned_cols=156  Identities=13%  Similarity=0.003  Sum_probs=88.3

Q ss_pred             EEEEEeCChHHhhc-------c-CCCCccEEcCCCChHHHHHHHHHHh---CCCCCChhhHHHHHHHHHHcC------CC
Q 048809            5 KVLLTARSHDVLSS-------K-MDCQKNIFVDVLNAKEAWSLFEKMT---GDCIENGELKSVATEIVKECA------GL   67 (878)
Q Consensus         5 ~iivTtR~~~v~~~-------~-~~~~~~~~l~~L~~~~~~~Lf~~~~---~~~~~~~~~~~~~~~i~~~c~------g~   67 (878)
                      .||+|||..++...       . ......+.+.+++.++.+++|...+   +...  .--.+....|++.|+      |.
T Consensus       181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G~  258 (412)
T 1w5s_A          181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDGS  258 (412)
T ss_dssp             EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCCC
T ss_pred             EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCCc
Confidence            47888876653311       0 0112239999999999999998765   2211  112457788999999      99


Q ss_pred             cchHHHHHHH-Hh-----cC--CChHHHHHHHHHHHccCcchhhhhhhhhcccccCCCCCChHHHHHHHhhhcccC----
Q 048809           68 PIAILPVAKA-LK-----NK--SSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSY----  135 (878)
Q Consensus        68 Pla~~~~g~~-l~-----~~--~~~~~w~~~l~~l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp----  135 (878)
                      |..+..+... ..     +.  -+.+.+..++.....       ...+.-+++.||+      +.+.++..+|.+.    
T Consensus       259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------~~~~~~~l~~l~~------~~~~~l~aia~l~~~~~  325 (412)
T 1w5s_A          259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------ASIQTHELEALSI------HELIILRLIAEATLGGM  325 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------CCSSSSSCH------HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------cchHHHHHHcCCH------HHHHHHHHHHHHHhcCC
Confidence            9765544432 11     11  133444444332110       2345567788999      9999999888653    


Q ss_pred             -CccHHHHHHHHh--h---ccCccCCCcHHHHHHHHHHHHHHHHhccccccc
Q 048809          136 -IRNVKDLLYHGM--G---LGLFQNINTVDEARDRAHTLVDKLKNSCLLLGG  181 (878)
Q Consensus       136 -~~~~~~li~~w~--~---~g~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~~  181 (878)
                       .....++...+.  +   .|.  ..-+..++    .+++++|++.+++...
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~l~~L~~~gli~~~  371 (412)
T 1w5s_A          326 EWINAGLLRQRYEDASLTMYNV--KPRGYTQY----HIYLKHLTSLGLVDAK  371 (412)
T ss_dssp             SSBCHHHHHHHHHHHHHHHSCC--CCCCHHHH----HHHHHHHHHTTSEEEE
T ss_pred             CCccHHHHHHHHHHHHHhhcCC--CCCCHHHH----HHHHHHHHhCCCEEee
Confidence             123344444332  1   121  11122223    3478999999999653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.15  E-value=0.033  Score=49.25  Aligned_cols=52  Identities=25%  Similarity=0.260  Sum_probs=23.3

Q ss_pred             EEEeecCCCC--CCCchhhcCCCCCcEEEeeCCCCCCCCcc-ccCCCCCcEEEccCCC
Q 048809          253 YFRIHNDHSL--KIPDNFFTGMTELRVLDFTRMHLLALPSS-LGLLQNLQTLSLDYCE  307 (878)
Q Consensus       253 ~L~l~~~~~~--~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~  307 (878)
                      +++.+++.+.  .+|.++   ..+|++|+|++|.|+.+|.. |..+.+|++|+|++|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            3444444444  444332   12345555555555555432 3444444444444443

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=90.00  E-value=4.1  Score=43.24  Aligned_cols=155  Identities=10%  Similarity=-0.033  Sum_probs=90.4

Q ss_pred             CcEEEEEeCChHHhhc----c-CCCCccEEcCCCChHHHHHHHHHHhC----CCCCChhhHHHHHHHHHHcC---CCcc-
Q 048809            3 GCKVLLTARSHDVLSS----K-MDCQKNIFVDVLNAKEAWSLFEKMTG----DCIENGELKSVATEIVKECA---GLPI-   69 (878)
Q Consensus         3 gs~iivTtR~~~v~~~----~-~~~~~~~~l~~L~~~~~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~---g~Pl-   69 (878)
                      +.+||+||+.......    . ......+.+.+++.++..++|+.++.    .....   .+....|++.++   |.|- 
T Consensus       164 ~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~  240 (384)
T 2qby_B          164 NISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARK  240 (384)
T ss_dssp             CEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHH
T ss_pred             ceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHH
Confidence            5678999987532111    0 01123899999999999999999862    11222   345667777777   8776 


Q ss_pred             hHHHHHHHH--h---cCCChHHHHHHHHHHHccCcchhhhhhhhhcccccCCCCCChHHHHHHHhhhcccCC-ccH-HHH
Q 048809           70 AILPVAKAL--K---NKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLIGYSYI-RNV-KDL  142 (878)
Q Consensus        70 a~~~~g~~l--~---~~~~~~~w~~~l~~l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~~~fp~-~~~-~~l  142 (878)
                      |+.++....  .   ..-+.+.++.++++...        ..+.-+++.|++      +.|..+..++.... -.+ +..
T Consensus       241 a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~--------~~~~~~~~~l~~------~~~~~l~al~~~~~~~~~~~~~  306 (384)
T 2qby_B          241 AVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ--------ERLIEAVKALPF------HYKLALRSLIESEDVMSAHKMY  306 (384)
T ss_dssp             HHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH--------HHHHHHHHSSCH------HHHHHHHHHHTCCBHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc--------chHHHHHHcCCH------HHHHHHHHHHHhcccChHHHHH
Confidence            544444433  2   12367788877776432        335566788888      76766666665111 222 122


Q ss_pred             HHHHhhccCccCCCcHHHHHHHHHHHHHHHHhcccccc
Q 048809          143 LYHGMGLGLFQNINTVDEARDRAHTLVDKLKNSCLLLG  180 (878)
Q Consensus       143 i~~w~~~g~i~~~~~~~~~~~~~~~~l~~L~~~~l~~~  180 (878)
                      .......| + ...+...+    .+++..|.+.+++..
T Consensus       307 ~~~~~~~g-~-~~~~~~~~----~~~l~~L~~~gli~~  338 (384)
T 2qby_B          307 TDLCNKFK-Q-KPLSYRRF----SDIISELDMFGIVKI  338 (384)
T ss_dssp             HHHHHHTT-C-CCCCHHHH----HHHHHHHHHTTSEEE
T ss_pred             HHHHHHcC-C-CCCCHHHH----HHHHHHHHhCCCEEE
Confidence            22222233 1 11223333    348899999999975

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=88.40  E-value=0.66  Score=45.57  Aligned_cols=77  Identities=10%  Similarity=0.090  Sum_probs=52.8

Q ss_pred             CCcEEEEEeCChHHhhc-cCCCCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHh
Q 048809            2 GGCKVLLTARSHDVLSS-KMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALK   79 (878)
Q Consensus         2 ~gs~iivTtR~~~v~~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~   79 (878)
                      .+.++|+||+....... .......+++.+++.+|.++++...+..... .--.+....|++.|+|.|..+..+...+.
T Consensus       155 ~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~~  232 (250)
T 1njg_A          155 EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAI  232 (250)
T ss_dssp             TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            46778888876542221 1222468999999999999999988731111 11235677899999999999887765543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=87.62  E-value=0.27  Score=46.54  Aligned_cols=62  Identities=16%  Similarity=0.276  Sum_probs=36.2

Q ss_pred             cCCCCCcEEEeeCC-CCC-----CCCccccCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEeeCCCcc
Q 048809          270 TGMTELRVLDFTRM-HLL-----ALPSSLGLLQNLQTLSLDYCELGD-----M-AIIGDLKKLVILALRGSDMK  331 (878)
Q Consensus       270 ~~l~~Lr~L~Ls~~-~i~-----~lp~~i~~L~~L~~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~  331 (878)
                      ..-..|+.|+|+++ .|.     .+-+.+..-+.|+.|+|++|.+.+     + ..+..=+.|++|+|++|.|.
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            34456666777664 542     234445555667777777776653     2 33444556777777776654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=87.03  E-value=0.28  Score=46.42  Aligned_cols=79  Identities=13%  Similarity=0.087  Sum_probs=47.6

Q ss_pred             CCccEEEeecC-CCCC-----CCchhhcCCCCCcEEEeeCCCCC-----CCCccccCCCCCcEEEccCCCCCC-----c-
Q 048809          249 PQLKYFRIHND-HSLK-----IPDNFFTGMTELRVLDFTRMHLL-----ALPSSLGLLQNLQTLSLDYCELGD-----M-  311 (878)
Q Consensus       249 ~~Lr~L~l~~~-~~~~-----l~~~~~~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~-----l-  311 (878)
                      +.|+.|+++++ .+..     +- ..+..-..|+.|+|++|.|.     .+-+.+..-+.|++|+|++|.|..     + 
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            45666666553 3332     11 22355567888888888773     344555556778888888888763     2 


Q ss_pred             ccccCcccCcEEEeeCC
Q 048809          312 AIIGDLKKLVILALRGS  328 (878)
Q Consensus       312 ~~i~~L~~L~~L~l~~~  328 (878)
                      ..+..=+.|++|+|+++
T Consensus       120 ~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCceeEEECCCC
Confidence            34444455777777654

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=85.06  E-value=1.2  Score=46.33  Aligned_cols=75  Identities=7%  Similarity=-0.050  Sum_probs=48.8

Q ss_pred             cEEEEEeCChHHhhcc--CCCCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHh
Q 048809            4 CKVLLTARSHDVLSSK--MDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALK   79 (878)
Q Consensus         4 s~iivTtR~~~v~~~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~   79 (878)
                      .++|.||.........  ......+.+.+++.+|..+++...++.... .--.+....+++++.|.|-.+..+...+.
T Consensus       139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~  215 (324)
T 1hqc_A          139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVR  215 (324)
T ss_dssp             CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred             EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            4566666644321111  112357899999999999999998832111 11235678899999999988877665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	878
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	9e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 70.2 bits (171), Expect = 9e-14
 Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 2/113 (1%)

Query: 2   GGCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIV 61
              + L+T R  ++ ++     + I V  L   E +   E          + + V  + +
Sbjct: 156 LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTI 215

Query: 62  KECAGLPIAILPVAKALKNKSSLYVWKDALRQLKNKSLLGAAYSSLELSYYHL 114
           +  +G P  ++   K+ + K +         +L+++ L+G        SY  L
Sbjct: 216 ELSSGNPATLMMFFKSCEPK-TFEKMAQLNNKLESRGLVG-VECITPYSYKSL 266

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 22/150 (14%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPD---------- 266
           L        L + T + L N+ I+ L       +L   ++  +    I            
Sbjct: 231 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 290

Query: 267 ----------NFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGD 316
                     +  + +  L  L     ++  +   +  L  LQ L     ++ D++ + +
Sbjct: 291 ELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVSSLAN 349

Query: 317 LKKLVILALRGSDMKELVGEIGQLTQLRLL 346
           L  +  L+   + + +L   +  LT++  L
Sbjct: 350 LTNINWLSAGHNQISDLT-PLANLTRITQL 378

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 3e-04
 Identities = 22/111 (19%), Positives = 49/111 (44%), Gaps = 3/111 (2%)

Query: 217 LTSWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELR 276
           +++      L   T + LN + + ++        L Y  ++ ++   I     + +T+L+
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 332

Query: 277 VLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRG 327
            L F    + +  SSL  L N+  LS  + ++ D+  + +L ++  L L  
Sbjct: 333 RLFFANNKV-SDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND 382

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 248 CPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCE 307
             +L     + + S     +       L  L+ +   L+ LP+       L+ L   +  
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNH 315

Query: 308 LGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRL 345
           L +  +    + L  L +  + ++E       +  LR+
Sbjct: 316 LAE--VPELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	878
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.83
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.78
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.78
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.7
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.64
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.64
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.61
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.61
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.54
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.54
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.53
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.52
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.51
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.49
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.45
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.44
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.43
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.4
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.35
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.31
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.28
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.24
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.22
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.15
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.06
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.02
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.88
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.88
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.77
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.0
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.97
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.42
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.29
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.49
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.46
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.89
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	91.11

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.83  E-value=1.5e-21  Score=199.68  Aligned_cols=122  Identities=16%  Similarity=0.174  Sum_probs=105.9

Q ss_pred             CCcEEEEEeCChHHhhccCCCCccEEcCCCChHHHHHHHHHHhCCCCCChhhHHHHHHHHHHcCCCcchHHHHHHHHhcC
Q 048809            2 GGCKVLLTARSHDVLSSKMDCQKNIFVDVLNAKEAWSLFEKMTGDCIENGELKSVATEIVKECAGLPIAILPVAKALKNK   81 (878)
Q Consensus         2 ~gs~iivTtR~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla~~~~g~~l~~~   81 (878)
                      .|||||||||++.||..+....+.|+|++|+.+|||+||+++|+.....+..++++++||++|+|+||||+++|+.|+.+
T Consensus       156 ~~srilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k  235 (277)
T d2a5yb3         156 LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK  235 (277)
T ss_dssp             TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS
T ss_pred             cCceEEEEeehHHHHHhcCCCCceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCHHHHHHHHHHhccC
Confidence            58999999999999996333347899999999999999999996545556678999999999999999999999999987


Q ss_pred             CChHHHHHHHHHHHccCcchhhhhhhhhcccccCCCCCChHHHHHHHhhh
Q 048809           82 SSLYVWKDALRQLKNKSLLGAAYSSLELSYYHLEDEDLGGEELRKTFLLI  131 (878)
Q Consensus        82 ~~~~~w~~~l~~l~~~~~~~~~~~~l~~sy~~L~~~~~~~~~~k~cf~~~  131 (878)
                       +.++|.+..+.++.... .++.+++.+||++||+      ++|+||.++
T Consensus       236 -~~~~~~~~~~~L~~~~~-~~v~~il~~sY~~L~~------~lk~c~~~l  277 (277)
T d2a5yb3         236 -TFEKMAQLNNKLESRGL-VGVECITPYSYKSLAM------ALQRCVEVL  277 (277)
T ss_dssp             -SHHHHHHHHHHHHHHCS-STTCCCSSSSSSSHHH------HHHHHHHTS
T ss_pred             -CHHHHHHHHHHHhcCcH-HHHHHHHHHHHhcccH------HHHHHHHhC
Confidence             78899999888876543 4899999999999999      999999874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=1.6e-17  Score=180.37  Aligned_cols=85  Identities=15%  Similarity=0.239  Sum_probs=61.1

Q ss_pred             CCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEeeC
Q 048809          248 CPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRG  327 (878)
Q Consensus       248 ~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~~  327 (878)
                      +.+|++|+++++.+..+. + +..+++|++|+|++|.|+.+|+ ++++++|++|++++|.++.+..++++++|+.|++++
T Consensus        43 l~~l~~L~l~~~~I~~l~-g-l~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~  119 (384)
T d2omza2          43 LDQVTTLQADRLGIKSID-G-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN  119 (384)
T ss_dssp             HTTCCEEECCSSCCCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             hCCCCEEECCCCCCCCcc-c-cccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccccccccccccccccc
Confidence            456666666666666654 3 4677788888888888877764 777888888888888877776677788888888777


Q ss_pred             CCcccchH
Q 048809          328 SDMKELVG  335 (878)
Q Consensus       328 ~~l~~lp~  335 (878)
                      +.++.++.
T Consensus       120 ~~~~~~~~  127 (384)
T d2omza2         120 NQITDIDP  127 (384)
T ss_dssp             SCCCCCGG
T ss_pred             cccccccc
Confidence            76665443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=2e-17  Score=179.53  Aligned_cols=331  Identities=18%  Similarity=0.227  Sum_probs=208.1

Q ss_pred             cCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809          226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY  305 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~  305 (878)
                      ..++++|++.++.++++...-.+++|++|++++|.+..++.  |+++++|++|++++|.+..+++ ++.+++|++|++++
T Consensus        43 l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~  119 (384)
T d2omza2          43 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  119 (384)
T ss_dssp             HTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             hCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccccccc-cccccccccccccc
Confidence            56799999999999998654589999999999999999985  7999999999999999998864 89999999999999


Q ss_pred             CCCCCcccccCcccCcEEEeeCCCcccchHhhcc-cccCccc------ccc--cccCCcEEEccCCCCCccccccccccc
Q 048809          306 CELGDMAIIGDLKKLVILALRGSDMKELVGEIGQ-LTQLRLL------IAP--ILSRLEELYIGESPIEWGKVEGVDGER  376 (878)
Q Consensus       306 ~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~-L~~L~~L------ip~--~l~~L~~L~l~~~~~~~~~~~~~~~~~  376 (878)
                      +.++.+........+..+....+.+..+...... .......      ...  ............+.             
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  186 (384)
T d2omza2         120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-------------  186 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccc-------------
Confidence            9998886677778888888877755544332111 0000000      000  11111111111111             


Q ss_pred             cccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEecccccccccchhhhhhhhhhhccCCccccchhHHhh
Q 048809          377 RNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGSQWTWDYISSEISEIFRLMVASGANICLNGGHIMQ  456 (878)
Q Consensus       377 ~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~l~l~~~~~~~~~~~~~  456 (878)
                       .........+++++.+.++.+....++.. ..                                               
T Consensus       187 -~~~~~~~~~l~~~~~l~l~~n~i~~~~~~-~~-----------------------------------------------  217 (384)
T d2omza2         187 -VSDISVLAKLTNLESLIATNNQISDITPL-GI-----------------------------------------------  217 (384)
T ss_dssp             -CCCCGGGGGCTTCSEEECCSSCCCCCGGG-GG-----------------------------------------------
T ss_pred             -cccccccccccccceeeccCCccCCCCcc-cc-----------------------------------------------
Confidence             11223344455566666665554443321 12                                               


Q ss_pred             ccccceEEecCcCCcccccccCcCCCCCCCcEEEEccCCCceEEeecccccccccCcccccceeeccccccccceecCCC
Q 048809          457 LKGIKDLCLGGSLDMKSVLYGSDGEGFPQLKRLEVVKNSNLLCVVDTVDRATALTTAFPVLESLLLRHLSNLEKICRGPL  536 (878)
Q Consensus       457 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~  536 (878)
                      .++|++|++.++.. .+ .+.+  ..+++|+.|++.++. +..+.        ....+++|+.|+++++. +..+    .
T Consensus       218 ~~~L~~L~l~~n~l-~~-~~~l--~~l~~L~~L~l~~n~-l~~~~--------~~~~~~~L~~L~l~~~~-l~~~----~  279 (384)
T d2omza2         218 LTNLDELSLNGNQL-KD-IGTL--ASLTNLTDLDLANNQ-ISNLA--------PLSGLTKLTELKLGANQ-ISNI----S  279 (384)
T ss_dssp             CTTCCEEECCSSCC-CC-CGGG--GGCTTCSEEECCSSC-CCCCG--------GGTTCTTCSEEECCSSC-CCCC----G
T ss_pred             cCCCCEEECCCCCC-CC-cchh--hcccccchhccccCc-cCCCC--------cccccccCCEeeccCcc-cCCC----C
Confidence            34555555555432 11 1222  346777777776653 33221        34556777777776642 3322    2


Q ss_pred             CccccCCccEEEeecCCCcccccchhhhhhccCccEEEEecCCcchhhhcccccccccCCCCccccccccceeecccCCC
Q 048809          537 AAESFCKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQNLEVIFAAERGDESSNSNTQVIELTQLTTLELCSLPQ  616 (878)
Q Consensus       537 ~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~  616 (878)
                      +...++.++.+.+.++ .+..+..   ...+++++.|+++++ .+..++.             +..+++|++|++++| .
T Consensus       280 ~~~~~~~l~~l~~~~n-~l~~~~~---~~~~~~l~~L~ls~n-~l~~l~~-------------l~~l~~L~~L~L~~n-~  340 (384)
T d2omza2         280 PLAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFN-NISDISP-------------VSSLTKLQRLFFANN-K  340 (384)
T ss_dssp             GGTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSS-CCSCCGG-------------GGGCTTCCEEECCSS-C
T ss_pred             cccccccccccccccc-ccccccc---cchhcccCeEECCCC-CCCCCcc-------------cccCCCCCEEECCCC-C
Confidence            2455677777777764 4444432   366788888888876 3444431             223888888888887 5


Q ss_pred             cceecCCCcccccCCcceEEEecCCCcc-ccccccccccccccceeEEEEecc
Q 048809          617 LTSFCTGDLHFEFPSLEKLKILECPQVK-FKSTIHESTKKRFHTIKVLCIEGY  668 (878)
Q Consensus       617 l~~~~~~~~~~~~~~L~~L~l~~C~~l~-lp~~~~~~~~~~l~~L~~L~l~~c  668 (878)
                      ++.++.   ...+++|++|++++| +++ ++.  +.+    +++|+.|+|++|
T Consensus       341 l~~l~~---l~~l~~L~~L~l~~N-~l~~l~~--l~~----l~~L~~L~L~~N  383 (384)
T d2omza2         341 VSDVSS---LANLTNINWLSAGHN-QISDLTP--LAN----LTRITQLGLNDQ  383 (384)
T ss_dssp             CCCCGG---GGGCTTCCEEECCSS-CCCBCGG--GTT----CTTCSEEECCCE
T ss_pred             CCCChh---HcCCCCCCEEECCCC-cCCCChh--hcc----CCCCCEeeCCCC
Confidence            666553   456888888888875 556 543  344    888888888876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=1e-15  Score=159.88  Aligned_cols=155  Identities=16%  Similarity=0.296  Sum_probs=105.3

Q ss_pred             CcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCC
Q 048809          229 CTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCE  307 (878)
Q Consensus       229 lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~  307 (878)
                      .+.++-+++.++++|..+ .+++++|++++|.+..+|+..|.++.+|++|++++|.+..+ |..|.++++|++|++++|.
T Consensus        12 ~~~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             TTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCCCCccCCCC-CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc
Confidence            356777777788888766 36888999999988888887788888999999999988877 5668888999999999888


Q ss_pred             CCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCC
Q 048809          308 LGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNL  387 (878)
Q Consensus       308 l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l  387 (878)
                      ++.++. .....|+.|++.++.+..++.....          ....+..+....+...          ........+..+
T Consensus        91 l~~l~~-~~~~~l~~L~~~~n~l~~l~~~~~~----------~~~~~~~l~~~~n~~~----------~~~~~~~~~~~l  149 (305)
T d1xkua_          91 LKELPE-KMPKTLQELRVHENEITKVRKSVFN----------GLNQMIVVELGTNPLK----------SSGIENGAFQGM  149 (305)
T ss_dssp             CSBCCS-SCCTTCCEEECCSSCCCBBCHHHHT----------TCTTCCEEECCSSCCC----------GGGBCTTGGGGC
T ss_pred             cCcCcc-chhhhhhhhhccccchhhhhhhhhh----------cccccccccccccccc----------ccCCCccccccc
Confidence            876622 2235778888888877776654211          1123334444433222          011223455666


Q ss_pred             CCCCEEEeecCCCCCCCc
Q 048809          388 SKLTSLEILIQDEKTLPR  405 (878)
Q Consensus       388 ~~L~~L~l~~~~~~~~~~  405 (878)
                      ++|+.+++.++....+|.
T Consensus       150 ~~L~~l~l~~n~l~~l~~  167 (305)
T d1xkua_         150 KKLSYIRIADTNITTIPQ  167 (305)
T ss_dssp             TTCCEEECCSSCCCSCCS
T ss_pred             cccCccccccCCccccCc
Confidence            777777777766555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.64  E-value=2.3e-14  Score=152.93  Aligned_cols=140  Identities=24%  Similarity=0.292  Sum_probs=105.0

Q ss_pred             CCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCC
Q 048809          228 DCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCE  307 (878)
Q Consensus       228 ~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~  307 (878)
                      ++++|+++++.++.+|+.  .++|++|++++|.+..+|+.    +.+|+.|++++|.++.++.-.   ..|++|++++|.
T Consensus        39 ~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n~l~~l~~lp---~~L~~L~L~~n~  109 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQ  109 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc----hhhhhhhhhhhcccchhhhhc---cccccccccccc
Confidence            478999999999999864  57999999999999999863    468999999999998776421   469999999999


Q ss_pred             CCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCC
Q 048809          308 LGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNL  387 (878)
Q Consensus       308 l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l  387 (878)
                      ++.++.++++++|++|+++++.+...|..+..+              ..+.+..+...              ....++.+
T Consensus       110 l~~lp~~~~l~~L~~L~l~~~~~~~~~~~~~~l--------------~~l~~~~~~~~--------------~~~~l~~l  161 (353)
T d1jl5a_         110 LEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL--------------EFIAAGNNQLE--------------ELPELQNL  161 (353)
T ss_dssp             CSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTC--------------CEEECCSSCCS--------------SCCCCTTC
T ss_pred             cccccchhhhccceeeccccccccccccccccc--------------cchhhcccccc--------------cccccccc
Confidence            998877899999999999999887766544333              33333332211              23345566


Q ss_pred             CCCCEEEeecCCCCCCC
Q 048809          388 SKLTSLEILIQDEKTLP  404 (878)
Q Consensus       388 ~~L~~L~l~~~~~~~~~  404 (878)
                      +.++.+.+..+.....+
T Consensus       162 ~~l~~L~l~~n~~~~~~  178 (353)
T d1jl5a_         162 PFLTAIYADNNSLKKLP  178 (353)
T ss_dssp             TTCCEEECCSSCCSSCC
T ss_pred             ccceecccccccccccc
Confidence            67777777776655444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.2e-16  Score=156.40  Aligned_cols=176  Identities=20%  Similarity=0.240  Sum_probs=103.8

Q ss_pred             EEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCC
Q 048809          231 AISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGD  310 (878)
Q Consensus       231 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~  310 (878)
                      .++.++++++.+|..+. +++++|++++|.+..+|.+.|..+++|++|+|++|.++.+|. ++.+++|++|+|++|.++.
T Consensus        14 ~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~   91 (266)
T d1p9ag_          14 EVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQS   91 (266)
T ss_dssp             EEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSS
T ss_pred             EEEccCCCCCeeCcCcC-cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccccccccccc
Confidence            34444444444444331 345555555555555554444555555555555555544432 3445555555555555443


Q ss_pred             c-ccccCcccCcEEEeeCCCcccchH-hhcccccCccc---------ccc----cccCCcEEEccCCCCCcccccccccc
Q 048809          311 M-AIIGDLKKLVILALRGSDMKELVG-EIGQLTQLRLL---------IAP----ILSRLEELYIGESPIEWGKVEGVDGE  375 (878)
Q Consensus       311 l-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L---------ip~----~l~~L~~L~l~~~~~~~~~~~~~~~~  375 (878)
                      . ..+.++++|++|+++++.+..++. .+..+.++++|         +|.    .+.+|+.|++.+|.+.          
T Consensus        92 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~----------  161 (266)
T d1p9ag_          92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT----------  161 (266)
T ss_dssp             CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS----------
T ss_pred             cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc----------
Confidence            3 444455555555555554444332 23344444444         111    5667888999998876          


Q ss_pred             ccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEEe
Q 048809          376 RRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI  420 (878)
Q Consensus       376 ~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~  420 (878)
                        ......+..+++|++|++++|.+..+|.++..+++|+.|+++.
T Consensus       162 --~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         162 --ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             --CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred             --ccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecC
Confidence              2334567889999999999999999999988999999999863

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=2.3e-14  Score=149.48  Aligned_cols=174  Identities=21%  Similarity=0.327  Sum_probs=123.6

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcccc
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLG  293 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~  293 (878)
                      .+...|. .++.++++|++++|.++++++. + .+++|++|++++|.+..++...|.++++|++|++++|+++.+|..+.
T Consensus        21 ~L~~lP~-~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~   99 (305)
T d1xkua_          21 GLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP   99 (305)
T ss_dssp             CCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC
T ss_pred             CCCccCC-CCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchh
Confidence            4555554 4678899999999999999874 3 78999999999999999988878999999999999999999997654


Q ss_pred             CCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccc---hHhhcccccCcccccccccCCcEEEccCCCCCccc
Q 048809          294 LLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKEL---VGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGK  368 (878)
Q Consensus       294 ~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~l---p~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~  368 (878)
                        ..|+.|++.+|.+..+  ..+.....++.++...+.....   +..+..+           ++|+.+++.++.+..  
T Consensus       100 --~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l-----------~~L~~l~l~~n~l~~--  164 (305)
T d1xkua_         100 --KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-----------KKLSYIRIADTNITT--  164 (305)
T ss_dssp             --TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-----------TTCCEEECCSSCCCS--
T ss_pred             --hhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccc-----------cccCccccccCCccc--
Confidence              6899999999998865  4566778888888887743322   2234333           445666666654430  


Q ss_pred             cccccccccccCcccccCCCCCCEEEeecCCCCCC-CcchhcccCCceEEE
Q 048809          369 VEGVDGERRNASLHELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRI  418 (878)
Q Consensus       369 ~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l  418 (878)
                                 ...  .-+++|+.|+++++..... +..+..++.++.|.+
T Consensus       165 -----------l~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~  202 (305)
T d1xkua_         165 -----------IPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL  202 (305)
T ss_dssp             -----------CCS--SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred             -----------cCc--ccCCccCEEECCCCcCCCCChhHhhcccccccccc
Confidence                       111  1245777888777664433 233334444444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.61  E-value=6.9e-14  Score=149.08  Aligned_cols=134  Identities=15%  Similarity=0.101  Sum_probs=96.7

Q ss_pred             CCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEeeCC
Q 048809          249 PQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGS  328 (878)
Q Consensus       249 ~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~  328 (878)
                      .++++|+++++.+..+|+    .+++|++|+|++|+|+.+|+.+   .+|+.|++++|.++.++.+.  ..|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSCC--TTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCC----CCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhhc--ccccccccccc
Confidence            478999999999999996    2578999999999999999765   57899999999988775443  46999999999


Q ss_pred             CcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCcchh
Q 048809          329 DMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPRDLS  408 (878)
Q Consensus       329 ~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~  408 (878)
                      .+..+|. +++++           +|+.|++.++.+...             +   .....+..+.+....... +..+.
T Consensus       109 ~l~~lp~-~~~l~-----------~L~~L~l~~~~~~~~-------------~---~~~~~l~~l~~~~~~~~~-~~~l~  159 (353)
T d1jl5a_         109 QLEKLPE-LQNSS-----------FLKIIDVDNNSLKKL-------------P---DLPPSLEFIAAGNNQLEE-LPELQ  159 (353)
T ss_dssp             CCSSCCC-CTTCT-----------TCCEEECCSSCCSCC-------------C---CCCTTCCEEECCSSCCSS-CCCCT
T ss_pred             ccccccc-hhhhc-----------cceeecccccccccc-------------c---cccccccchhhccccccc-ccccc
Confidence            9999885 55555           455667776655411             1   123466777776655433 22344


Q ss_pred             cccCCceEEEEe
Q 048809          409 FFKMLQRYRILI  420 (878)
Q Consensus       409 ~l~~L~~L~l~~  420 (878)
                      .+..++.+.+..
T Consensus       160 ~l~~l~~L~l~~  171 (353)
T d1jl5a_         160 NLPFLTAIYADN  171 (353)
T ss_dssp             TCTTCCEEECCS
T ss_pred             ccccceeccccc
Confidence            667777776653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.54  E-value=7.4e-15  Score=153.82  Aligned_cols=90  Identities=18%  Similarity=0.305  Sum_probs=53.5

Q ss_pred             CccEEEeecCCCC---CCCchhhcCCCCCcEEEeeC-CCCC-CCCccccCCCCCcEEEccCCCCCCc--ccccCcccCcE
Q 048809          250 QLKYFRIHNDHSL---KIPDNFFTGMTELRVLDFTR-MHLL-ALPSSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVI  322 (878)
Q Consensus       250 ~Lr~L~l~~~~~~---~l~~~~~~~l~~Lr~L~Ls~-~~i~-~lp~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~  322 (878)
                      +++.|+++++.+.   .+|..+ +++++|++|+|++ |.+. .+|.+|++|++|++|+|++|.+..+  ..+..+.+|++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            4555666665333   355553 6677777777765 4554 5677777777777777777765532  44666666777


Q ss_pred             EEeeCCCc-ccchHhhccc
Q 048809          323 LALRGSDM-KELVGEIGQL  340 (878)
Q Consensus       323 L~l~~~~l-~~lp~~i~~L  340 (878)
                      +++++|.+ ..+|..++++
T Consensus       130 l~l~~N~~~~~~p~~l~~l  148 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSL  148 (313)
T ss_dssp             EECCSSEEESCCCGGGGGC
T ss_pred             cccccccccccCchhhccC
Confidence            77666633 2344444433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=9.6e-14  Score=135.43  Aligned_cols=164  Identities=22%  Similarity=0.292  Sum_probs=138.5

Q ss_pred             cCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809          226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY  305 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~  305 (878)
                      +.+++++++.++.++.++..-.+++|++|++++|.+..++.  ++.+++|++|++++|.++.+| .++.+++|++|++++
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cccCccccccccccccccccc-ccccccccccccccc
Confidence            45789999999999988765589999999999999888875  589999999999999999887 589999999999999


Q ss_pred             CCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809          306 CELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN  385 (878)
Q Consensus       306 ~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~  385 (878)
                      |.+..++.+..+.+|+.+++++|.++..+. +.+           +++|+.+++.+|.+.              .+..+.
T Consensus       122 ~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~-~~~-----------l~~L~~l~l~~n~l~--------------~i~~l~  175 (210)
T d1h6ta2         122 NGISDINGLVHLPQLESLYLGNNKITDITV-LSR-----------LTKLDTLSLEDNQIS--------------DIVPLA  175 (210)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGG-----------CTTCSEEECCSSCCC--------------CCGGGT
T ss_pred             cccccccccccccccccccccccccccccc-ccc-----------ccccccccccccccc--------------cccccc
Confidence            999888889999999999999998876543 443           446677788887665              234588


Q ss_pred             CCCCCCEEEeecCCCCCCCcchhcccCCceEEEE
Q 048809          386 NLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL  419 (878)
Q Consensus       386 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~  419 (878)
                      ++++|+.|++++|.+..++ .+..+++|+.|+++
T Consensus       176 ~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         176 GLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEE
T ss_pred             CCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEcc
Confidence            8999999999999988876 46788999999985

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=8.5e-14  Score=134.59  Aligned_cols=161  Identities=19%  Similarity=0.282  Sum_probs=135.7

Q ss_pred             cCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809          226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY  305 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~  305 (878)
                      ..++++|++.++.+++++..-.+++|++|++++|.+..+++  |+++++|++|++++|.+..+| .+.++++|++|++++
T Consensus        39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFN  115 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCS
T ss_pred             hcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc-ccccccccccccccc
Confidence            56799999999999988765589999999999999888875  699999999999999998887 489999999999999


Q ss_pred             CCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCccccc
Q 048809          306 CELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELN  385 (878)
Q Consensus       306 ~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~  385 (878)
                      |.+..+..+..+++|++|++++|.+..+|. +..           +++|+.|++.+|.+.              .+..++
T Consensus       116 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~-----------~~~L~~L~l~~n~l~--------------~l~~l~  169 (199)
T d2omxa2         116 NQITDIDPLKNLTNLNRLELSSNTISDISA-LSG-----------LTSLQQLNFSSNQVT--------------DLKPLA  169 (199)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTT-----------CTTCSEEECCSSCCC--------------CCGGGT
T ss_pred             cccccccccchhhhhHHhhhhhhhhccccc-ccc-----------ccccccccccccccc--------------CCcccc
Confidence            998888889999999999999998877653 543           346677788887665              234588


Q ss_pred             CCCCCCEEEeecCCCCCCCcchhcccCCceE
Q 048809          386 NLSKLTSLEILIQDEKTLPRDLSFFKMLQRY  416 (878)
Q Consensus       386 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L  416 (878)
                      ++++|+.|++++|++..++ .+..+++|+.|
T Consensus       170 ~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         170 NLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             TCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             CCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            9999999999999988776 45678888765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.52  E-value=2.4e-14  Score=149.90  Aligned_cols=168  Identities=18%  Similarity=0.290  Sum_probs=120.4

Q ss_pred             CCCcEEEeeCCCCCC---CCCCC-CCCCccEEEeec-CC-CCCCCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCc
Q 048809          227 KDCTAISLNNSNINE---LPQGF-ECPQLKYFRIHN-DH-SLKIPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQ  299 (878)
Q Consensus       227 ~~lr~l~l~~~~~~~---l~~~~-~~~~Lr~L~l~~-~~-~~~l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~  299 (878)
                      .+++.|+++++.+..   +|+.+ ++++|++|++++ |. .+.+|.. |+++++|++|+|++|.+..+ |..+..+.+|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccccccccccccccchhhhc
Confidence            358899999998874   77777 899999999997 54 4479987 59999999999999999765 56689999999


Q ss_pred             EEEccCCCCC-Cc-ccccCcccCcEEEeeCCCcc-cchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccc
Q 048809          300 TLSLDYCELG-DM-AIIGDLKKLVILALRGSDMK-ELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGER  376 (878)
Q Consensus       300 ~L~L~~~~l~-~l-~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~  376 (878)
                      ++++++|.+. .+ ..++++++|+++++++|.+. .+|..++.+.++.          +.+.+..|.+.           
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~----------~~l~~~~n~l~-----------  187 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF----------TSMTISRNRLT-----------  187 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC----------CEEECCSSEEE-----------
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccc----------ccccccccccc-----------
Confidence            9999999854 33 88999999999999999776 6788888776542          34555555443           


Q ss_pred             cccCcccccCCCCCCEEEeecCCC-CCCCcchhcccCCceEEE
Q 048809          377 RNASLHELNNLSKLTSLEILIQDE-KTLPRDLSFFKMLQRYRI  418 (878)
Q Consensus       377 ~~~~~~~L~~l~~L~~L~l~~~~~-~~~~~~~~~l~~L~~L~l  418 (878)
                       +..+..+..+.. ..+++..+.. ...|.....+++++.+.+
T Consensus       188 -~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~  228 (313)
T d1ogqa_         188 -GKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHL  228 (313)
T ss_dssp             -EECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred             -cccccccccccc-ccccccccccccccccccccccccccccc
Confidence             223344444433 3566654432 233444334444444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.5e-14  Score=143.65  Aligned_cols=190  Identities=25%  Similarity=0.433  Sum_probs=135.7

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEee-CCCCCCC-Ccc
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFT-RMHLLAL-PSS  291 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls-~~~i~~l-p~~  291 (878)
                      .+..+|. .++.+++.|+|++|.++.+|+..  .+++|++|+++++.+..++...+..+..++.++.. .+.++.+ |..
T Consensus        22 ~L~~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~  100 (284)
T d1ozna_          22 GLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT  100 (284)
T ss_dssp             CCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred             CCCccCC-CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            3445543 46778999999999999998743  88999999999999998888888889999998876 4466666 567


Q ss_pred             ccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCccc---------ccc----cccCCc
Q 048809          292 LGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLL---------IAP----ILSRLE  355 (878)
Q Consensus       292 i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L---------ip~----~l~~L~  355 (878)
                      ++++++|++|++++|.+..+  ..++...+|+.+++++|.++.+|.+ +..+.+|++|         ++.    ++++|+
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~  180 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccc
Confidence            89999999999999997754  6788899999999999999888754 6666666665         221    445555


Q ss_pred             EEEccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCCCCCc-chhcccCCceEEE
Q 048809          356 ELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRI  418 (878)
Q Consensus       356 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l  418 (878)
                      .+++.+|.+.            ...+..+..+++|+.|+++.|....++. .+..+.+|+.+++
T Consensus       181 ~l~l~~N~l~------------~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l  232 (284)
T d1ozna_         181 RLLLHQNRVA------------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL  232 (284)
T ss_dssp             EEECCSSCCC------------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred             hhhhhhcccc------------ccChhHhhhhhhcccccccccccccccccccccccccCEEEe
Confidence            5555555443            1223445555566666666655555443 2334555555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=6.8e-14  Score=142.30  Aligned_cols=170  Identities=20%  Similarity=0.235  Sum_probs=143.6

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCCCCCC-C-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCcccc
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINELPQG-F-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLG  293 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~  293 (878)
                      ++...|. .+++++++|++++|.++.++.. + .+++|++|++++|.+..++.  +..+++|++|+|++|.++..|..+.
T Consensus        21 ~L~~iP~-~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~Ls~N~l~~~~~~~~   97 (266)
T d1p9ag_          21 NLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQ   97 (266)
T ss_dssp             CCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCSSCCCCTT
T ss_pred             CCCeeCc-CcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence            4444443 4667899999999999998754 3 79999999999999988875  5789999999999999999999999


Q ss_pred             CCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCccc---------ccc----cccCCcEE
Q 048809          294 LLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLL---------IAP----ILSRLEEL  357 (878)
Q Consensus       294 ~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L---------ip~----~l~~L~~L  357 (878)
                      .+++|++|++++|.+..+  ..+..+.++++|++++|.++.+|.. +..+.+|+.+         ++.    .+++|+.|
T Consensus        98 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L  177 (266)
T d1p9ag_          98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL  177 (266)
T ss_dssp             TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred             cccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCcccccccccccee
Confidence            999999999999997765  7788999999999999999988865 5678888888         332    68899999


Q ss_pred             EccCCCCCccccccccccccccCcccccCCCCCCEEEeecCCCC
Q 048809          358 YIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEILIQDEK  401 (878)
Q Consensus       358 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~~~~~~  401 (878)
                      ++++|.+.             ..+..+..+++|+.|++++|...
T Consensus       178 ~Ls~N~L~-------------~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         178 LLQENSLY-------------TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             ECCSSCCC-------------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ecccCCCc-------------ccChhHCCCCCCCEEEecCCCCC
Confidence            99999876             23456677899999999998643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=1.2e-12  Score=129.42  Aligned_cols=175  Identities=18%  Similarity=0.274  Sum_probs=138.1

Q ss_pred             cCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809          226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY  305 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~  305 (878)
                      ..+++.|++.++.+++++..-.+++|++|++++|.+..++.  |.++.+|+++++++|.++.++ .+..+++|+++++++
T Consensus        40 l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS  116 (227)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred             cCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc-ccccccccccccccc
Confidence            45788999999888888654588999999999988877765  688899999999999888775 578889999999988


Q ss_pred             CCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCccc---------ccc--cccCCcEEEccCCCCCccccccccc
Q 048809          306 CELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLL---------IAP--ILSRLEELYIGESPIEWGKVEGVDG  374 (878)
Q Consensus       306 ~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L---------ip~--~l~~L~~L~l~~~~~~~~~~~~~~~  374 (878)
                      |....+..+.....++.+.++++.+...+. +.+..+|++|         ++.  ++++|+.|++++|.+.         
T Consensus       117 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~---------  186 (227)
T d1h6ua2         117 TQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS---------  186 (227)
T ss_dssp             SCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC---------
T ss_pred             ccccccchhccccchhhhhchhhhhchhhh-hccccccccccccccccccchhhcccccceecccCCCccC---------
Confidence            887777777788888888888876665433 6666777777         111  6788899999888664         


Q ss_pred             cccccCcccccCCCCCCEEEeecCCCCCCCcchhcccCCceEEEE
Q 048809          375 ERRNASLHELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL  419 (878)
Q Consensus       375 ~~~~~~~~~L~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~  419 (878)
                           .+..++.+++|++|++++|+...++. ++.+++|+.|+++
T Consensus       187 -----~l~~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         187 -----DISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             -----CCGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred             -----CChhhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence                 23457788999999999998887764 6688899988875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.6e-14  Score=145.60  Aligned_cols=137  Identities=19%  Similarity=0.245  Sum_probs=67.9

Q ss_pred             ccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc---ccccccccccccccceeEEEEecccc-cccceeee
Q 048809          603 LTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK---FKSTIHESTKKRFHTIKVLCIEGYDY-DGEELFET  678 (878)
Q Consensus       603 ~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~---lp~~~~~~~~~~l~~L~~L~l~~c~~-~~~~~~~~  678 (878)
                      +++|++|++++|..++..........+++|++|++++|.+++   +...+...    +++|+.|++++|.. +++..   
T Consensus        94 ~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~i~~~~---  166 (284)
T d2astb2          94 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV----SETITQLNLSGYRKNLQKSD---  166 (284)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS----CTTCCEEECCSCGGGSCHHH---
T ss_pred             CCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc----ccccchhhhccccccccccc---
Confidence            556666666666555432211122345666666666666654   22222222    45666666666532 11111   


Q ss_pred             ccccccceeeccCCCCchhhhccccccccCCccEEEEccCCCccc-ccCcccccCCCcEEEecccCCceEeechhhhhhh
Q 048809          679 VENGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLIN-LVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSL  757 (878)
Q Consensus       679 ~~~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l  757 (878)
                                       +..    ...++++|++|++++|..+++ .+..+..+++|++|++++|+++++..... +..+
T Consensus       167 -----------------l~~----l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~-L~~~  224 (284)
T d2astb2         167 -----------------LST----LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE-LGEI  224 (284)
T ss_dssp             -----------------HHH----HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG-GGGC
T ss_pred             -----------------ccc----cccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHH-HhcC
Confidence                             011    112345566666666655542 23344555666666666666665432222 3445


Q ss_pred             ccceEEEEccc
Q 048809          758 VRLKQMKIFHC  768 (878)
Q Consensus       758 ~~L~~L~i~~C  768 (878)
                      ++|+.|++++|
T Consensus       225 ~~L~~L~l~~~  235 (284)
T d2astb2         225 PTLKTLQVFGI  235 (284)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEeeeCC
Confidence            66666666665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=6.2e-13  Score=131.57  Aligned_cols=82  Identities=16%  Similarity=0.222  Sum_probs=52.1

Q ss_pred             CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEee
Q 048809          247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALR  326 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~  326 (878)
                      ++.+|++|.+.+|.+..++.  +.++++|++|++++|.+..+++ +..+.+|+++++++|.++.++.+.++++|++++++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT  115 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred             HcCCcCEEECCCCCCCcchh--HhcCCCCcEeecCCceeecccc-ccccccccccccccccccccccccccccccccccc
Confidence            45666667776666666642  4666677777776666665542 66666666666666666666666666666666666


Q ss_pred             CCCcc
Q 048809          327 GSDMK  331 (878)
Q Consensus       327 ~~~l~  331 (878)
                      ++...
T Consensus       116 ~~~~~  120 (227)
T d1h6ua2         116 STQIT  120 (227)
T ss_dssp             TSCCC
T ss_pred             ccccc
Confidence            65443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.1e-12  Score=134.73  Aligned_cols=165  Identities=19%  Similarity=0.272  Sum_probs=122.1

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCCC-
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYCE-  307 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~-  307 (878)
                      ..+..++..++++|..+. +.+++|++++|.+..+|...|.++++|++|+++++.+..++ ..+..+..++.+....+. 
T Consensus        14 ~~v~c~~~~L~~iP~~ip-~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             CEEECCSSCCSSCCTTCC-TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             eEEEcCCCCCCccCCCCC-CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            345677777888887653 67899999999999999888899999999999999998775 445788999999876554 


Q ss_pred             CCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccc
Q 048809          308 LGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHEL  384 (878)
Q Consensus       308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L  384 (878)
                      ++.+  ..+.++++|++|++++|.+..++.. ++.           ..+|+.+++.+|.+.            ......+
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----------~~~L~~l~l~~N~l~------------~i~~~~f  149 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG-----------LAALQYLYLQDNALQ------------ALPDDTF  149 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-----------CTTCCEEECCSSCCC------------CCCTTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccch-----------hcccchhhhcccccc------------ccChhHh
Confidence            7665  6789999999999999987776543 333           345667788777665            1223456


Q ss_pred             cCCCCCCEEEeecCCCCCCCcc-hhcccCCceEEE
Q 048809          385 NNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRI  418 (878)
Q Consensus       385 ~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l  418 (878)
                      ..+++|+.|++++|....++.. +..+++|+.+.+
T Consensus       150 ~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccchhhcccccCcccccchhhhccccccchhhh
Confidence            7778888888888877665543 223444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=8.4e-13  Score=127.45  Aligned_cols=155  Identities=17%  Similarity=0.278  Sum_probs=125.9

Q ss_pred             CCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccC
Q 048809          237 SNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGD  316 (878)
Q Consensus       237 ~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~  316 (878)
                      +.+.......+++++++|+++++.+..++.  +..+++|++|++++|.++.++. ++++++|++|++++|.+..++.+++
T Consensus        28 ~~~~~~~~~~~l~~l~~L~l~~~~i~~l~~--l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~  104 (199)
T d2omxa2          28 TNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLAN  104 (199)
T ss_dssp             SSTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTT
T ss_pred             CCCCCccCHHHhcCCCEEECCCCCCCCccc--cccCCCcCcCccccccccCccc-ccCCccccccccccccccccccccc
Confidence            344443333357899999999998888864  5899999999999999998875 9999999999999999988888999


Q ss_pred             cccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccccCcccccCCCCCCEEEee
Q 048809          317 LKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRNASLHELNNLSKLTSLEIL  396 (878)
Q Consensus       317 L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~L~~L~l~  396 (878)
                      +++|++|+++++....++. +.+           +++|+.|++++|.+.              .+..+..+++|+.|++.
T Consensus       105 l~~L~~L~l~~~~~~~~~~-~~~-----------l~~L~~L~l~~n~l~--------------~~~~l~~~~~L~~L~l~  158 (199)
T d2omxa2         105 LTNLTGLTLFNNQITDIDP-LKN-----------LTNLNRLELSSNTIS--------------DISALSGLTSLQQLNFS  158 (199)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GTT-----------CTTCSEEECCSSCCC--------------CCGGGTTCTTCSEEECC
T ss_pred             ccccccccccccccccccc-cch-----------hhhhHHhhhhhhhhc--------------ccccccccccccccccc
Confidence            9999999999997766543 443           446677888888664              24568889999999999


Q ss_pred             cCCCCCCCcchhcccCCceEEEEec
Q 048809          397 IQDEKTLPRDLSFFKMLQRYRILIG  421 (878)
Q Consensus       397 ~~~~~~~~~~~~~l~~L~~L~l~~~  421 (878)
                      +|....++. +..+++|+.|+++.+
T Consensus       159 ~n~l~~l~~-l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         159 SNQVTDLKP-LANLTTLERLDISSN  182 (199)
T ss_dssp             SSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             cccccCCcc-ccCCCCCCEEECCCC
Confidence            999888764 668999999998644

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=2.3e-12  Score=125.47  Aligned_cols=150  Identities=21%  Similarity=0.383  Sum_probs=127.9

Q ss_pred             CCCCccccCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCC
Q 048809          219 SWPDKDVLKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNL  298 (878)
Q Consensus       219 ~~~~~~~~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L  298 (878)
                      ...+-+.+.++++|++++|.++.++....+++|++|++++|.+..++.  +..+++|++|++++|.+..++ .+..+.+|
T Consensus        60 ~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l  136 (210)
T d1h6ta2          60 SVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDIN-GLVHLPQL  136 (210)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCCG-GGGGCTTC
T ss_pred             CchhHhhCCCCCEEeCCCccccCccccccCcccccccccccccccccc--ccccccccccccccccccccc-cccccccc
Confidence            334445688999999999999998876689999999999999998874  689999999999999998775 58899999


Q ss_pred             cEEEccCCCCCCcccccCcccCcEEEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCCccccccccccccc
Q 048809          299 QTLSLDYCELGDMAIIGDLKKLVILALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIEWGKVEGVDGERRN  378 (878)
Q Consensus       299 ~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  378 (878)
                      +++++++|.++.+..++++++|+++++++|.++.++. ++++           ++|++|++++|.+.             
T Consensus       137 ~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l-----------~~L~~L~Ls~N~i~-------------  191 (210)
T d1h6ta2         137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGL-----------TKLQNLYLSKNHIS-------------  191 (210)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTC-----------TTCCEEECCSSCCC-------------
T ss_pred             ccccccccccccccccccccccccccccccccccccc-ccCC-----------CCCCEEECCCCCCC-------------
Confidence            9999999999998889999999999999999888764 5544           45677799888765             


Q ss_pred             cCcccccCCCCCCEEEeec
Q 048809          379 ASLHELNNLSKLTSLEILI  397 (878)
Q Consensus       379 ~~~~~L~~l~~L~~L~l~~  397 (878)
                       .+..+..+++|++|++++
T Consensus       192 -~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 -DLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             -BCGGGTTCTTCSEEEEEE
T ss_pred             -CChhhcCCCCCCEEEccC
Confidence             245688999999999974

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.9e-14  Score=144.60  Aligned_cols=185  Identities=13%  Similarity=0.081  Sum_probs=117.4

Q ss_pred             ccccceeecccCCCcceecCCCcccccCCcceEEEecCCCcc--ccccccccccccccceeEEEEecccccccceeeecc
Q 048809          603 LTQLTTLELCSLPQLTSFCTGDLHFEFPSLEKLKILECPQVK--FKSTIHESTKKRFHTIKVLCIEGYDYDGEELFETVE  680 (878)
Q Consensus       603 ~~~L~~L~L~~c~~l~~~~~~~~~~~~~~L~~L~l~~C~~l~--lp~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~  680 (878)
                      ..+|++|++++|..-... .......+++|++|++.+|+ ++  .+..+. .    +++|++|++++|..+++..+.   
T Consensus        45 ~~~L~~LdLs~~~i~~~~-l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l~-~----~~~L~~L~Ls~c~~itd~~l~---  114 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVST-LHGILSQCSKLQNLSLEGLR-LSDPIVNTLA-K----NSNLVRLNLSGCSGFSEFALQ---  114 (284)
T ss_dssp             CBCCCEEECTTCEECHHH-HHHHHTTBCCCSEEECTTCB-CCHHHHHHHT-T----CTTCSEEECTTCBSCCHHHHH---
T ss_pred             CCCCCEEECCCCccCHHH-HHHHHHhCCCcccccccccC-CCcHHHHHHh-c----CCCCcCccccccccccccccc---
Confidence            567888888887422211 11134568888888888884 43  333332 2    788888888888764332211   


Q ss_pred             ccccceeeccCCCCchhhhccccccccCCccEEEEccCCCcccc--cCcc-cccCCCcEEEecccC-CceEeechhhhhh
Q 048809          681 NGVNAMIKGINFHPDLKQILKQESSHANNLEVLEIYGCDNLINL--VPSS-TSFQNLTTVAVDFCY-GMINILTSSTAKS  756 (878)
Q Consensus       681 ~~~~l~~l~l~~~~~l~~i~~~~~~~l~~L~~L~l~~c~~l~~l--~~~~-~~l~~L~~L~i~~c~-~l~~l~~~~~~~~  756 (878)
                                       .    ....+++|++|++++|..+++-  .... ..+++|+.|++++|. ++++.....++.+
T Consensus       115 -----------------~----l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~  173 (284)
T d2astb2         115 -----------------T----LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  173 (284)
T ss_dssp             -----------------H----HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             -----------------h----hhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccc
Confidence                             1    1134677888888888776432  1111 235678888888764 4555434456677


Q ss_pred             hccceEEEEccccccccccccccccccccccccccccccchhhccccCcccceeeccccceeEcCCcceEEEcCC
Q 048809          757 LVRLKQMKIFHCKMITEIVVDDDEEGDNYAANYEIVFSELKELRLSSLESLTSFCSVNNCAFKFPSLERLVVEDC  831 (878)
Q Consensus       757 l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~l~sL~~L~i~~C  831 (878)
                      +++|++|++++|..+++....           .+..+++|++|++++|+++++-...  .+.++|+|++|++++|
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~-----------~l~~~~~L~~L~L~~C~~i~~~~l~--~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQ-----------EFFQLNYLQHLSLSRCYDIIPETLL--ELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGG-----------GGGGCTTCCEEECTTCTTCCGGGGG--GGGGCTTCCEEECTTS
T ss_pred             cccccccccccccCCCchhhh-----------hhcccCcCCEEECCCCCCCChHHHH--HHhcCCCCCEEeeeCC
Confidence            888888888888877643221           2334788888888888887754332  2456788888888888

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=6.1e-13  Score=116.78  Aligned_cols=100  Identities=18%  Similarity=0.219  Sum_probs=52.2

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCC
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELG  309 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~  309 (878)
                      |.|++++|+++.++..-.+++|++|++++|.+..+|+. |..+++|++|++++|.|+.+| .++.+++|++|++++|.++
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            44555555555555433455555555555555555543 355555555555555555554 2555555555555555544


Q ss_pred             Cc---ccccCcccCcEEEeeCCCcc
Q 048809          310 DM---AIIGDLKKLVILALRGSDMK  331 (878)
Q Consensus       310 ~l---~~i~~L~~L~~L~l~~~~l~  331 (878)
                      .+   ..++++++|++|++++|.+.
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCC
Confidence            32   23445555555555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=7.8e-13  Score=116.08  Aligned_cols=101  Identities=18%  Similarity=0.244  Sum_probs=87.5

Q ss_pred             cEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCcccccCcccCcEEEeeCCCcc
Q 048809          252 KYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDMAIIGDLKKLVILALRGSDMK  331 (878)
Q Consensus       252 r~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l~~i~~L~~L~~L~l~~~~l~  331 (878)
                      |+|++++|.+..++.  +.++.+|++|++++|.++.+|+.++.+++|++|++++|.++.++.++++++|++|++++|.++
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccC
Confidence            789999999998885  699999999999999999999999999999999999999999988999999999999999998


Q ss_pred             cchH--hhcccccCcccccccccCCcEEEccCCCCC
Q 048809          332 ELVG--EIGQLTQLRLLIAPILSRLEELYIGESPIE  365 (878)
Q Consensus       332 ~lp~--~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~  365 (878)
                      .+|.  .++.+           ++|+.|++.+|.+.
T Consensus        79 ~~~~~~~l~~~-----------~~L~~L~l~~N~i~  103 (124)
T d1dcea3          79 QSAAIQPLVSC-----------PRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSSTTGGGGGC-----------TTCCEEECTTSGGG
T ss_pred             CCCCchhhcCC-----------CCCCEEECCCCcCC
Confidence            8764  34443           45566677777654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.9e-12  Score=125.88  Aligned_cols=105  Identities=16%  Similarity=0.290  Sum_probs=85.0

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCC-C-CccccCCCCCcEEEccCC-
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLA-L-PSSLGLLQNLQTLSLDYC-  306 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~-l-p~~i~~L~~L~~L~L~~~-  306 (878)
                      +.++..+.+++++|..+. +++++|++++|.+..+|...|.++++|++|++++|.+.. + +..+..++++++|.+..+ 
T Consensus        11 ~~i~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC-SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             CEEEEeCCCCCCcCCCCC-CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            577888888888887653 589999999999999998888999999999999998865 4 345788999999988765 


Q ss_pred             CCCCc--ccccCcccCcEEEeeCCCcccchH
Q 048809          307 ELGDM--AIIGDLKKLVILALRGSDMKELVG  335 (878)
Q Consensus       307 ~l~~l--~~i~~L~~L~~L~l~~~~l~~lp~  335 (878)
                      .+...  ..+.++++|++|+++++.+...+.
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~  120 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLPD  120 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCCC
T ss_pred             cccccccccccccccccccccchhhhccccc
Confidence            46543  668899999999999987766543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.7e-12  Score=119.91  Aligned_cols=119  Identities=18%  Similarity=0.193  Sum_probs=102.5

Q ss_pred             cCCCcEEEeeCCCCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccc-cCCCCCcEEEc
Q 048809          226 LKDCTAISLNNSNINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSL-GLLQNLQTLSL  303 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~L~L  303 (878)
                      +.++|.|++++|.++.++... .+++|++|++++|.+..++.  |..+++|++|++++|.++.+|+.+ ..+++|++|++
T Consensus        17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCcccccccccccccee
Confidence            446899999999999998764 68999999999999998864  699999999999999999998765 67999999999


Q ss_pred             cCCCCCCc---ccccCcccCcEEEeeCCCcccchH----hhcccccCccc
Q 048809          304 DYCELGDM---AIIGDLKKLVILALRGSDMKELVG----EIGQLTQLRLL  346 (878)
Q Consensus       304 ~~~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L  346 (878)
                      ++|.++.+   ..+..+++|++|++++|.++..|.    .+..+++|++|
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~L  144 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL  144 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEE
T ss_pred             ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCee
Confidence            99998875   467889999999999999888774    36666666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.7e-12  Score=118.56  Aligned_cols=86  Identities=17%  Similarity=0.214  Sum_probs=52.1

Q ss_pred             CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccCCCCCCc-cc-ccCcccCcEEE
Q 048809          247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDYCELGDM-AI-IGDLKKLVILA  324 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~l~~l-~~-i~~L~~L~~L~  324 (878)
                      ...++|+|++++|.+..++. .+..+++|++|+|++|.|+.++ .+..+++|++|++++|.++.+ +. +..+++|++|+
T Consensus        16 n~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcCcCcEEECCCCCCCccCc-cccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            45566666666666666653 3456666666666666666663 466666666666666666654 22 34566666666


Q ss_pred             eeCCCcccch
Q 048809          325 LRGSDMKELV  334 (878)
Q Consensus       325 l~~~~l~~lp  334 (878)
                      +++|.++.++
T Consensus        94 L~~N~i~~~~  103 (162)
T d1a9na_          94 LTNNSLVELG  103 (162)
T ss_dssp             CCSCCCCCGG
T ss_pred             eccccccccc
Confidence            6666555543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.24  E-value=1.8e-11  Score=117.17  Aligned_cols=124  Identities=17%  Similarity=0.334  Sum_probs=94.4

Q ss_pred             cEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCC-CCchhhcCCCCCcEEEeeCCCCCCC-CccccCCCCCcEEEccCCC
Q 048809          230 TAISLNNSNINELPQGFECPQLKYFRIHNDHSLK-IPDNFFTGMTELRVLDFTRMHLLAL-PSSLGLLQNLQTLSLDYCE  307 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~-l~~~~~~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~  307 (878)
                      +.++.++++++.+|..+. +++++|++++|.+.. ++...|..+++|+.|+|++|.+..+ +..+..+++|++|+|++|.
T Consensus        11 ~~v~Cs~~~L~~iP~~lp-~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEEeCCCcCccCCCCC-CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            467788888888887653 688889999888764 6667788888999999998888765 4667888889999999998


Q ss_pred             CCCc--ccccCcccCcEEEeeCCCcccchHh-hcccccCcccccccccCCcEEEccCCCCC
Q 048809          308 LGDM--AIIGDLKKLVILALRGSDMKELVGE-IGQLTQLRLLIAPILSRLEELYIGESPIE  365 (878)
Q Consensus       308 l~~l--~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~Lip~~l~~L~~L~l~~~~~~  365 (878)
                      ++.+  ..|.++++|++|+|++|.++.+|.+ |..+.           +|++|++.+|.+.
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~-----------~L~~l~L~~N~~~  139 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-----------SLTSLNLASNPFN  139 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-----------TCCEEECTTCCBC
T ss_pred             ccccCHHHHhCCCcccccccCCccccccCHHHhcCCc-----------ccccccccccccc
Confidence            8865  5688889999999999888888765 44333           4455566665443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.22  E-value=1.3e-11  Score=118.18  Aligned_cols=118  Identities=19%  Similarity=0.291  Sum_probs=101.3

Q ss_pred             cCCCCCCccccCCCcEEEeeCCCCCC-CCCCC--CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCc-c
Q 048809          216 PLTSWPDKDVLKDCTAISLNNSNINE-LPQGF--ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPS-S  291 (878)
Q Consensus       216 ~~~~~~~~~~~~~lr~l~l~~~~~~~-l~~~~--~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~-~  291 (878)
                      +++..|. .++.++++|++++|.++. ++...  .+++|++|++++|.+..++.+.|..+++|++|+|++|+++.+|+ .
T Consensus        19 ~L~~iP~-~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~   97 (192)
T d1w8aa_          19 GLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM   97 (192)
T ss_dssp             CCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred             CcCccCC-CCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHH
Confidence            4455553 467899999999999976 54443  79999999999999999999889999999999999999999864 5


Q ss_pred             ccCCCCCcEEEccCCCCCCc--ccccCcccCcEEEeeCCCcccch
Q 048809          292 LGLLQNLQTLSLDYCELGDM--AIIGDLKKLVILALRGSDMKELV  334 (878)
Q Consensus       292 i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~l~~~~l~~lp  334 (878)
                      |.++++|++|+|++|.|+.+  ..+..+.+|++|++++|.+...+
T Consensus        98 F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             HhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence            89999999999999999976  66899999999999999776543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2e-10  Score=114.46  Aligned_cols=36  Identities=19%  Similarity=0.237  Sum_probs=17.0

Q ss_pred             CCccEEEeecCCCcccccchhhhhhccCccEEEEecCC
Q 048809          542 CKVKDIRVEWCDKLKNVFPLVIGRGLQQLQSIEVTGCQ  579 (878)
Q Consensus       542 ~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~  579 (878)
                      +++++|++.++ +++.++.. .+.++++|++|+++++.
T Consensus        29 ~~l~~L~Ls~n-~i~~l~~~-~f~~l~~L~~L~ls~n~   64 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVIQKG-AFSGFGDLEKIEISQND   64 (242)
T ss_dssp             SCCSEEEEESC-CCCEECTT-TTTTCTTCCEEEEESCT
T ss_pred             CCCCEEECcCC-cCCccChh-Hhhccchhhhhhhcccc
Confidence            34555555552 44444432 23445555555555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.06  E-value=1.6e-12  Score=124.75  Aligned_cols=105  Identities=17%  Similarity=0.301  Sum_probs=76.6

Q ss_pred             CcEEEeeCC--CCCCCCCCC-CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809          229 CTAISLNNS--NINELPQGF-ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY  305 (878)
Q Consensus       229 lr~l~l~~~--~~~~l~~~~-~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~  305 (878)
                      ...+++.+.  .+++++..+ .+++|++|++++|.+..++.  |..+++|++|+|++|.|+.+|..+..+.+|++|++++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCccc--ccCCccccChhhccccccccccccccccccccccccc
Confidence            455566543  244454444 67888888888887777763  5788888888888888887776666666788888888


Q ss_pred             CCCCCcccccCcccCcEEEeeCCCcccchH
Q 048809          306 CELGDMAIIGDLKKLVILALRGSDMKELVG  335 (878)
Q Consensus       306 ~~l~~l~~i~~L~~L~~L~l~~~~l~~lp~  335 (878)
                      |.++.++.+.++++|++|++++|.++.++.
T Consensus       103 N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~  132 (198)
T d1m9la_         103 NQIASLSGIEKLVNLRVLYMSNNKITNWGE  132 (198)
T ss_dssp             EECCCHHHHHHHHHSSEEEESEEECCCHHH
T ss_pred             ccccccccccccccccccccccchhccccc
Confidence            888877777888888888888887776653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.1e-11  Score=136.88  Aligned_cols=61  Identities=16%  Similarity=0.210  Sum_probs=31.5

Q ss_pred             cCCccEEEEccCCCccc-----ccCcccccCCCcEEEecccCCceEeechhhhhhh----ccceEEEEcccc
Q 048809          707 ANNLEVLEIYGCDNLIN-----LVPSSTSFQNLTTVAVDFCYGMINILTSSTAKSL----VRLKQMKIFHCK  769 (878)
Q Consensus       707 l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l----~~L~~L~i~~C~  769 (878)
                      .+.|++|++++|. +++     +...+...++|++|++++ +.+++-....++..+    .+|+.|++.++.
T Consensus       368 ~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~-N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         368 GSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSN-NCLGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             TCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCS-SSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             cCCCCEEECCCCC-CChHHHHHHHHHHhcCCCCCEEECCC-CcCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence            3557777777764 322     222234456777777776 355443222222222    356777776643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.88  E-value=1.2e-11  Score=118.45  Aligned_cols=109  Identities=21%  Similarity=0.251  Sum_probs=93.9

Q ss_pred             cCCCcEEEeeCCCCCCCCCCCCCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCCCCCCCCccccCCCCCcEEEccC
Q 048809          226 LKDCTAISLNNSNINELPQGFECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRMHLLALPSSLGLLQNLQTLSLDY  305 (878)
Q Consensus       226 ~~~lr~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~  305 (878)
                      +.++++|++++|.++.++..-.+++|++|++++|.+..+|.- +..+.+|++|++++|.++.++ .+..+++|++|++++
T Consensus        47 L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~  124 (198)
T d1m9la_          47 LKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSN  124 (198)
T ss_dssp             TTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEESE
T ss_pred             ccccceeECcccCCCCcccccCCccccChhhccccccccccc-ccccccccccccccccccccc-ccccccccccccccc
Confidence            668999999999999997644899999999999988888853 466778999999999999874 588999999999999


Q ss_pred             CCCCCc---ccccCcccCcEEEeeCCCcccchHh
Q 048809          306 CELGDM---AIIGDLKKLVILALRGSDMKELVGE  336 (878)
Q Consensus       306 ~~l~~l---~~i~~L~~L~~L~l~~~~l~~lp~~  336 (878)
                      |.++.+   ..++.+++|++|++++|.+...+..
T Consensus       125 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             chhccccccccccCCCccceeecCCCccccCccc
Confidence            999876   4688999999999999977665443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.2e-09  Score=95.95  Aligned_cols=101  Identities=18%  Similarity=0.212  Sum_probs=81.4

Q ss_pred             cEEEeeCCCCCCCCCCC-CCCCccEEEeecC-CCCCCCchhhcCCCCCcEEEeeCCCCCCCC-ccccCCCCCcEEEccCC
Q 048809          230 TAISLNNSNINELPQGF-ECPQLKYFRIHND-HSLKIPDNFFTGMTELRVLDFTRMHLLALP-SSLGLLQNLQTLSLDYC  306 (878)
Q Consensus       230 r~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~-~~~~l~~~~~~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~  306 (878)
                      ..++..++...++|..+ .+++|+.|++.++ .+..++.+.|..+.+|++|+|++|+|+.++ ..|..+++|++|+|++|
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            44677777777777666 7889999999776 588888888899999999999999998884 55889999999999999


Q ss_pred             CCCCc-ccccCcccCcEEEeeCCCc
Q 048809          307 ELGDM-AIIGDLKKLVILALRGSDM  330 (878)
Q Consensus       307 ~l~~l-~~i~~L~~L~~L~l~~~~l  330 (878)
                      .++.+ ..+....+|++|++++|.+
T Consensus        91 ~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          91 ALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCcccChhhhccccccccccCCCcc
Confidence            98876 4444445799999998855

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=8.4e-11  Score=129.52  Aligned_cols=19  Identities=21%  Similarity=0.149  Sum_probs=12.6

Q ss_pred             ccccCCCCCCEEEeecCCC
Q 048809          382 HELNNLSKLTSLEILIQDE  400 (878)
Q Consensus       382 ~~L~~l~~L~~L~l~~~~~  400 (878)
                      ..+..+++|++|++++|.+
T Consensus       106 ~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1         106 STLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             HHTTSCTTCCEEECCSSBC
T ss_pred             chhhccccccccccccccc
Confidence            4456667777777776653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.8e-08  Score=88.71  Aligned_cols=107  Identities=21%  Similarity=0.169  Sum_probs=88.7

Q ss_pred             CCCCccEEEeecCCCCCCCchhhcCCCCCcEEEeeCC-CCCCCC-ccccCCCCCcEEEccCCCCCCc--ccccCcccCcE
Q 048809          247 ECPQLKYFRIHNDHSLKIPDNFFTGMTELRVLDFTRM-HLLALP-SSLGLLQNLQTLSLDYCELGDM--AIIGDLKKLVI  322 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~~~~~~~l~~Lr~L~Ls~~-~i~~lp-~~i~~L~~L~~L~L~~~~l~~l--~~i~~L~~L~~  322 (878)
                      .+....+++..++...++|..+ ..+++|+.|+++++ .++.++ ..|.++.+|++|++++|.|+.+  ..|..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l-~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTS-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCccCcccc-cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            3445567888888888888874 88999999999876 588886 5689999999999999999976  66999999999


Q ss_pred             EEeeCCCcccchHhhcccccCcccccccccCCcEEEccCCCCC
Q 048809          323 LALRGSDMKELVGEIGQLTQLRLLIAPILSRLEELYIGESPIE  365 (878)
Q Consensus       323 L~l~~~~l~~lp~~i~~L~~L~~Lip~~l~~L~~L~l~~~~~~  365 (878)
                      |+|++|+++.+|.++...           .+|+.|++.+|.+.
T Consensus        85 L~Ls~N~l~~l~~~~~~~-----------~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQG-----------LSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCSTTTCS-----------CCCCEEECCSSCCC
T ss_pred             eeccCCCCcccChhhhcc-----------ccccccccCCCccc
Confidence            999999999998875332           24677899988765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.00  E-value=1e-06  Score=91.95  Aligned_cols=104  Identities=13%  Similarity=0.127  Sum_probs=61.1

Q ss_pred             CCcEEEeeCCCCCCCC-----CCC-CCCCccEEEeecCCCCCCC-----c--------hhhcCCCCCcEEEeeCCCCC--
Q 048809          228 DCTAISLNNSNINELP-----QGF-ECPQLKYFRIHNDHSLKIP-----D--------NFFTGMTELRVLDFTRMHLL--  286 (878)
Q Consensus       228 ~lr~l~l~~~~~~~l~-----~~~-~~~~Lr~L~l~~~~~~~l~-----~--------~~~~~l~~Lr~L~Ls~~~i~--  286 (878)
                      +++.|++++|.+....     ..+ ..++|++|++++|.+..-.     .        ......+.|++|+++++.+.  
T Consensus        94 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1          94 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             CcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccc
Confidence            4677777777655421     111 4567777777776432100     0        01134567777777777663  


Q ss_pred             ---CCCccccCCCCCcEEEccCCCCCC------c-ccccCcccCcEEEeeCCCcc
Q 048809          287 ---ALPSSLGLLQNLQTLSLDYCELGD------M-AIIGDLKKLVILALRGSDMK  331 (878)
Q Consensus       287 ---~lp~~i~~L~~L~~L~L~~~~l~~------l-~~i~~L~~L~~L~l~~~~l~  331 (878)
                         .+...+...++|++|++++|.+..      + ..+...++|++|++++|.++
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~  228 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  228 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccc
Confidence               233445566777777777777652      2 34566777777777777553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.97  E-value=9.1e-07  Score=92.32  Aligned_cols=145  Identities=13%  Similarity=0.144  Sum_probs=91.3

Q ss_pred             CCCCccEEEeecCCCCCCC----chhhcCCCCCcEEEeeCCCCCCC-----------CccccCCCCCcEEEccCCCCCC-
Q 048809          247 ECPQLKYFRIHNDHSLKIP----DNFFTGMTELRVLDFTRMHLLAL-----------PSSLGLLQNLQTLSLDYCELGD-  310 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~----~~~~~~l~~Lr~L~Ls~~~i~~l-----------p~~i~~L~~L~~L~L~~~~l~~-  310 (878)
                      ....|+.|++++|.+..-.    ...+...++|+.|+++++.....           ...+..+++|++|+|++|.+.. 
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            5788999999998543211    12246778999999998765432           2335678899999999998764 


Q ss_pred             ----c-ccccCcccCcEEEeeCCCcccchHhhccc-ccCccc----ccccccCCcEEEccCCCCCccccccccccccccC
Q 048809          311 ----M-AIIGDLKKLVILALRGSDMKELVGEIGQL-TQLRLL----IAPILSRLEELYIGESPIEWGKVEGVDGERRNAS  380 (878)
Q Consensus       311 ----l-~~i~~L~~L~~L~l~~~~l~~lp~~i~~L-~~L~~L----ip~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  380 (878)
                          + ..+...++|++|++++|.+..  .+...+ ..|..+    .......|+.|.+.++.+..        ......
T Consensus       109 ~~~~l~~~l~~~~~L~~L~l~~n~l~~--~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~--------~~~~~l  178 (344)
T d2ca6a1         109 AQEPLIDFLSKHTPLEHLYLHNNGLGP--QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN--------GSMKEW  178 (344)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHH--HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG--------GGHHHH
T ss_pred             cccchhhhhcccccchheecccccccc--cccccccccccccccccccccCcccceeecccccccc--------cccccc
Confidence                2 445678899999999986642  111111 111221    11145677888887776541        111223


Q ss_pred             cccccCCCCCCEEEeecCCCC
Q 048809          381 LHELNNLSKLTSLEILIQDEK  401 (878)
Q Consensus       381 ~~~L~~l~~L~~L~l~~~~~~  401 (878)
                      ...+...+.|+.|+++.+.+.
T Consensus       179 ~~~l~~~~~L~~L~L~~n~i~  199 (344)
T d2ca6a1         179 AKTFQSHRLLHTVKMVQNGIR  199 (344)
T ss_dssp             HHHHHHCTTCCEEECCSSCCC
T ss_pred             cchhhhhhhhccccccccccc
Confidence            344566778888888877643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=1.5e-05  Score=72.28  Aligned_cols=66  Identities=26%  Similarity=0.232  Sum_probs=45.3

Q ss_pred             hhhcCCCCCcEEEeeCCCCCCCC---ccccCCCCCcEEEccCCCCCCccccc--CcccCcEEEeeCCCccc
Q 048809          267 NFFTGMTELRVLDFTRMHLLALP---SSLGLLQNLQTLSLDYCELGDMAIIG--DLKKLVILALRGSDMKE  332 (878)
Q Consensus       267 ~~~~~l~~Lr~L~Ls~~~i~~lp---~~i~~L~~L~~L~L~~~~l~~l~~i~--~L~~L~~L~l~~~~l~~  332 (878)
                      .++.++++|++|+|++|+|+.++   ..+..+++|++|+|++|.++.++.+.  +..+|+.|++++|.+..
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            34567778888888888877653   34567788888888888877763322  33467788888876654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=1.2e-05  Score=73.03  Aligned_cols=78  Identities=22%  Similarity=0.264  Sum_probs=61.2

Q ss_pred             CCCCccEEEeecCCCCCCCc--hhhcCCCCCcEEEeeCCCCCCCCc-cccCCCCCcEEEccCCCCCCc-c--------cc
Q 048809          247 ECPQLKYFRIHNDHSLKIPD--NFFTGMTELRVLDFTRMHLLALPS-SLGLLQNLQTLSLDYCELGDM-A--------II  314 (878)
Q Consensus       247 ~~~~Lr~L~l~~~~~~~l~~--~~~~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~l~~l-~--------~i  314 (878)
                      .+++|++|++++|.+..++.  ..+..+++|++|+|++|.|+.+++ ......+|+.|++++|.+... .        .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            58899999999999888763  446889999999999999998865 223445799999999987643 1        25


Q ss_pred             cCcccCcEEE
Q 048809          315 GDLKKLVILA  324 (878)
Q Consensus       315 ~~L~~L~~L~  324 (878)
                      ..+++|++||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            5677888776

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.49  E-value=0.0018  Score=58.34  Aligned_cols=64  Identities=8%  Similarity=0.032  Sum_probs=39.6

Q ss_pred             hcCCCCCcEEEeeCCCCC-----CCCccccCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEeeCCCccc
Q 048809          269 FTGMTELRVLDFTRMHLL-----ALPSSLGLLQNLQTLSLDYCELGD-----M-AIIGDLKKLVILALRGSDMKE  332 (878)
Q Consensus       269 ~~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~~  332 (878)
                      +.+.++|+.|+|++|.+.     .+...+...+.|++|+|++|.+..     + ..+..-+.|++|+++++.+..
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCC
Confidence            355666777777777663     233445556677777777777652     2 445566667777777665443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.46  E-value=0.0026  Score=57.23  Aligned_cols=62  Identities=11%  Similarity=0.153  Sum_probs=35.4

Q ss_pred             cCCCCCcEEEeeCC-CCC-----CCCccccCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEeeCCCcc
Q 048809          270 TGMTELRVLDFTRM-HLL-----ALPSSLGLLQNLQTLSLDYCELGD-----M-AIIGDLKKLVILALRGSDMK  331 (878)
Q Consensus       270 ~~l~~Lr~L~Ls~~-~i~-----~lp~~i~~L~~L~~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~  331 (878)
                      .+.+.|+.|+|+++ .+.     .+-..+...++|++|++++|.+..     + ..+...++++.+++++|.+.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            44566666666653 342     133445566667777777776542     2 34455666777777666443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.89  E-value=0.006  Score=54.68  Aligned_cols=63  Identities=16%  Similarity=0.269  Sum_probs=41.3

Q ss_pred             cCCCCCcEEEeeCC-CCC-----CCCccccCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEeeCCCccc
Q 048809          270 TGMTELRVLDFTRM-HLL-----ALPSSLGLLQNLQTLSLDYCELGD-----M-AIIGDLKKLVILALRGSDMKE  332 (878)
Q Consensus       270 ~~l~~Lr~L~Ls~~-~i~-----~lp~~i~~L~~L~~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~~~~l~~  332 (878)
                      .+.++|+.|+|+++ .+.     .+-..+...++|++|+|++|.+..     + ..+...+.|++|++++|.+..
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            45577888888764 343     133456677788888888887652     2 345556778888888776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.11  E-value=0.022  Score=50.71  Aligned_cols=57  Identities=12%  Similarity=0.156  Sum_probs=33.8

Q ss_pred             cCCCCCcEEEeeCCCCCC-----CCccccCCCCCcEEEccCCCCCC-----c-ccccCcccCcEEEee
Q 048809          270 TGMTELRVLDFTRMHLLA-----LPSSLGLLQNLQTLSLDYCELGD-----M-AIIGDLKKLVILALR  326 (878)
Q Consensus       270 ~~l~~Lr~L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~l~~-----l-~~i~~L~~L~~L~l~  326 (878)
                      ...++|+.|++++|.+..     +-..+...+.|+.+++++|.+..     + ..+...++|+.++|+
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRID  110 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECC
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeec
Confidence            456667777777776531     33344556667777777766542     2 555666666665554