Citrus Sinensis ID: 048821

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
MASTGNGLDYDKEQELKAFDDTKAGVKGLVDSGIQSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMAPNPPPPEEYPEACRYAFLHLLNNIQRRA
cccccccccccHHHHHHHHccccHHHHHHHHccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccEEEccccccccccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHcc
cccccccccccHHHHHHHcHccHcccHHHHHccccccccEEEcccHHcccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEccccccccccccHHHHEEEEcccccccHHHccHHHHHHHHHHHHHHHHHc
mastgngldydkeqelkafddtkagvkglvdsgiqsvpkffvapseetcneksdlrhahfnvpiidlrdidkdgvRCEIVKEIGiasskwgffqvvnhdipqdIADEVIESIRRFneqpnhvkekfysrdktkkvrfnSNFDLYKARFANWRDTlsclmapnppppeeypEACRYAFLHLLNNIQRRA
mastgngldydkeqELKAFDDTKAGVKGLVDSGIQSVPKFFVAPSEETcneksdlrhahfnvpiidlrdidkDGVRCEIVKEIgiasskwgffQVVNHDIPQDIADEVIESIRrfneqpnhvkekfysrdktkkvrfnsnfDLYKARFANWRDTLSCLMAPNPPPPEEYPEACRYAFLHLLNNIQRRA
MASTGNGLDYDKEQELKAFDDTKAGVKGLVDSGIQSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMApnppppeeypeACRYAFLHLLNNIQRRA
************************GVKGLVDSGIQSVPKFFVAPS**TCNEKSDLRHAHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQ*NHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMA********YPEACRYAFLHLLNNI****
***************LKAFDDTKAGVKGLVDSGIQSVPKFFVAP***************FNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEK**********RFNSNFDLYKARFANWRDTLSCLMAPNPPPPEEYPEACRYAFLHLLNNIQRRA
MASTGNGLDYDKEQELKAFDDTKAGVKGLVDSGIQSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMAPNPPPPEEYPEACRYAFLHLLNNIQRRA
**********DKEQELKAFDDTKAGVKGLVDSGIQSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMAPNPPPPEEYPEACRYAFLHLLNNIQRRA
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASTGNGLDYDKEQELKAFDDTKAGVKGLVDSGIQSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMAPNPPPPEEYPEACRYAFLHLLNNIQRRA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query188 2.2.26 [Sep-21-2011]
P10967 363 1-aminocyclopropane-1-car N/A no 0.920 0.476 0.494 1e-44
Q84MB3 365 1-aminocyclopropane-1-car yes no 0.861 0.443 0.481 1e-41
Q9C5K7 369 1-aminocyclopropane-1-car no no 0.920 0.468 0.469 8e-39
P93824 360 1-aminocyclopropane-1-car no no 0.936 0.488 0.418 8e-39
Q8H1S4 369 1-aminocyclopropane-1-car no no 0.872 0.444 0.458 3e-38
O04847 401 Deacetoxyvindoline 4-hydr N/A no 0.888 0.416 0.418 6e-38
Q9LTH7 366 1-aminocyclopropane-1-car no no 0.930 0.478 0.449 1e-37
Q9SKK4 359 Probable 2-oxoacid depend no no 0.946 0.495 0.425 1e-37
Q9M2C4 370 1-aminocyclopropane-1-car no no 0.861 0.437 0.467 6e-37
Q9LSW6 362 1-aminocyclopropane-1-car no no 0.925 0.480 0.437 1e-36
>sp|P10967|ACCH3_SOLLC 1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1 Back     alignment and function desciption
 Score =  179 bits (453), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 89/180 (49%), Positives = 121/180 (67%), Gaps = 7/180 (3%)

Query: 10  YDKEQELKAFDDTKAGVKGLVDSGIQSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRD 69
           YDK  ELKAFDDTKAGVKGLVDSGI  VP+ FV P ++    ++     HF  P+IDL+ 
Sbjct: 10  YDKMSELKAFDDTKAGVKGLVDSGITKVPQIFVLPPKD----RAKKCETHFVFPVIDLQG 65

Query: 70  IDKDGVRC-EIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYS 128
           ID+D ++  EIV ++  AS KWGFFQVVNH IP  + D  ++  R+F EQ N VK+++Y+
Sbjct: 66  IDEDPIKHKEIVDKVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQYYT 125

Query: 129 RDKTKKVRFNSNFDLYKARF--ANWRDTLSCLMAPNPPPPEEYPEACRYAFLHLLNNIQR 186
           RD  KKV + SN DLYK+    A+WRDT+ C MAPNPP  +E+P  C  + +    ++++
Sbjct: 126 RDTAKKVVYTSNLDLYKSSVPAASWRDTIFCYMAPNPPSLQEFPTPCGESLIDFSKDVKK 185

Solanum lycopersicum (taxid: 4081)
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5K7|ACCH2_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1 Back     alignment and function description
>sp|P93824|ACCH6_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 6 OS=Arabidopsis thaliana GN=At1g04350 PE=2 SV=1 Back     alignment and function description
>sp|Q8H1S4|ACCH3_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1 Back     alignment and function description
>sp|O04847|DV4H_CATRO Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2 Back     alignment and function description
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description
>sp|Q9SKK4|GSL_ARATH Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1 Back     alignment and function description
>sp|Q9M2C4|ACCH8_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 8 OS=Arabidopsis thaliana GN=At3g61400 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSW6|ACH10_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 10 OS=Arabidopsis thaliana GN=At5g43450 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query188
147822811 373 hypothetical protein VITISV_042886 [Viti 0.909 0.458 0.517 2e-49
225433035 373 PREDICTED: 1-aminocyclopropane-1-carboxy 0.909 0.458 0.517 5e-49
147787952 373 hypothetical protein VITISV_000872 [Viti 0.909 0.458 0.523 1e-48
147845654 373 hypothetical protein VITISV_017626 [Viti 0.909 0.458 0.523 1e-48
359477763 684 PREDICTED: 1-aminocyclopropane-1-carboxy 0.909 0.25 0.523 2e-48
359477771 680 PREDICTED: 1-aminocyclopropane-1-carboxy 0.946 0.261 0.468 2e-45
359477716 673 PREDICTED: 1-aminocyclopropane-1-carboxy 0.920 0.257 0.483 1e-43
225433009 364 PREDICTED: 1-aminocyclopropane-1-carboxy 0.861 0.445 0.497 1e-43
350538985 364 2-oxoglutarate-dependent dioxygenase [So 0.909 0.469 0.517 3e-43
225433017 365 PREDICTED: 1-aminocyclopropane-1-carboxy 0.920 0.473 0.488 4e-43
>gi|147822811|emb|CAN66006.1| hypothetical protein VITISV_042886 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/172 (51%), Positives = 125/172 (72%), Gaps = 1/172 (0%)

Query: 4   TGNGLDYDKEQELKAFDDTKAGVKGLVDSGIQSVPKFFVAPSEETCNEKSDLRHAHFNVP 63
            G   DYD++ ELK+FDD+K GVKGL+D+G+  +P+ F+    +T         +  +VP
Sbjct: 11  AGKASDYDRKSELKSFDDSKLGVKGLLDAGLTQIPRMFINEQHKTDMTWGSRESSPESVP 70

Query: 64  IIDLRDIDKDG-VRCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHV 122
           I+D + +DKD  +R +I+K++G A  KWGFFQVVNH IP+ + +++I+ IRRF+EQ    
Sbjct: 71  ILDFKGMDKDAALRTQIIKKVGEACEKWGFFQVVNHGIPESVLNDMIDGIRRFHEQDAET 130

Query: 123 KEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMAPNPPPPEEYPEACR 174
           K+++YSRD  KKVRFNSNFDLY+AR ANWRD+L+C+MAPNPP PE+ P  CR
Sbjct: 131 KKEYYSRDSQKKVRFNSNFDLYQARMANWRDSLACVMAPNPPLPEQLPAVCR 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225433035|ref|XP_002284663.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147787952|emb|CAN67227.1| hypothetical protein VITISV_000872 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147845654|emb|CAN80594.1| hypothetical protein VITISV_017626 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359477763|ref|XP_002284676.2| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359477771|ref|XP_003632020.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359477716|ref|XP_003632012.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433009|ref|XP_002284582.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|350538985|ref|NP_001234624.1| 2-oxoglutarate-dependent dioxygenase [Solanum lycopersicum] gi|66730858|dbj|BAD98961.1| 2-oxoglutarate-dependent dioxygenase [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|225433017|ref|XP_002284642.1| PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera] gi|147807864|emb|CAN66433.1| hypothetical protein VITISV_027452 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query188
TAIR|locus:2009130 365 AT1G06620 [Arabidopsis thalian 0.792 0.408 0.476 1.1e-34
TAIR|locus:2040045 359 AT2G25450 [Arabidopsis thalian 0.797 0.417 0.457 4.1e-33
TAIR|locus:2009210 369 AT1G06640 [Arabidopsis thalian 0.845 0.430 0.460 1.8e-32
TAIR|locus:2009175 369 AT1G06650 [Arabidopsis thalian 0.797 0.406 0.455 2.3e-32
TAIR|locus:2018349 360 AT1G04350 [Arabidopsis thalian 0.936 0.488 0.385 6e-32
TAIR|locus:2824199 366 AT1G06645 [Arabidopsis thalian 0.792 0.407 0.445 9.8e-32
TAIR|locus:2052796 362 AT2G30840 [Arabidopsis thalian 0.803 0.417 0.448 3.3e-31
TAIR|locus:2148303 366 AT5G59540 [Arabidopsis thalian 0.962 0.494 0.391 3.3e-31
TAIR|locus:2020798 398 2A6 [Arabidopsis thaliana (tax 0.797 0.376 0.450 5.4e-31
TAIR|locus:2052781 358 AT2G30830 [Arabidopsis thalian 0.888 0.466 0.412 6.9e-31
TAIR|locus:2009130 AT1G06620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 72/151 (47%), Positives = 100/151 (66%)

Query:    11 DKEQELKAFDDTKAGVKGLVDSGIQSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRDI 70
             D+   LKAFD+TK GVKGL+D+GI  +P  F AP     + K     + F++P IDL+  
Sbjct:    12 DRSTLLKAFDETKTGVKGLIDAGITEIPSIFRAPPATLTSPKPP-SSSDFSIPTIDLKGG 70

Query:    71 DKDGV-RCEIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSR 129
               D + R  +V++IG A+ KWGFFQV+NH IP D+ +++I+ IR F+EQ   VK+ FYSR
Sbjct:    71 GTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGFYSR 130

Query:   130 DKTKKVRFNSNFDLYKARFANWRDTLSCLMA 160
             D   K+ ++SNFDL+ +  ANWRDTL C  A
Sbjct:   131 DPASKMVYSSNFDLFSSPAANWRDTLGCYTA 161
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
TAIR|locus:2040045 AT2G25450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009210 AT1G06640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009175 AT1G06650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018349 AT1G04350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2824199 AT1G06645 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052796 AT2G30840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148303 AT5G59540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020798 2A6 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2052781 AT2G30830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
PLN02912 348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 3e-19
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 3e-19
PLN02639 337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 4e-19
PLN02947 374 PLN02947, PLN02947, oxidoreductase 2e-18
PLN02393 362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 6e-17
PLN02904 357 PLN02904, PLN02904, oxidoreductase 2e-14
PLN03178 360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 4e-13
PLN02758 361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 3e-10
COG3491 322 COG3491, PcbC, Isopenicillin N synthase and relate 5e-10
PLN02704 335 PLN02704, PLN02704, flavonol synthase 7e-09
PLN02750 345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 8e-09
PLN02254 358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 1e-08
PLN02997 325 PLN02997, PLN02997, flavonol synthase 1e-08
PLN02403 303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 2e-07
PLN02515 358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-06
PLN02216 357 PLN02216, PLN02216, protein SRG1 1e-05
PLN02276 361 PLN02276, PLN02276, gibberellin 20-oxidase 2e-05
PLN02365 300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 6e-05
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 2e-04
PTZ00273 320 PTZ00273, PTZ00273, oxidase reductase; Provisional 3e-04
PLN00417 348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 5e-04
PLN02485 329 PLN02485, PLN02485, oxidoreductase 7e-04
PLN02299 321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 0.001
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score = 83.5 bits (206), Expect = 3e-19
 Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 2/143 (1%)

Query: 30  VDSGIQSVPKFFVAPSEETCNEKSDLRHAHFNVPIIDLRDIDKDGVRCEIVKEIGIASSK 89
           + S +  VP  +V P  +  N  S++  +  ++P+IDLRD+     R +I+ +   A S 
Sbjct: 11  IASVVDHVPSNYVRPVSDRPN-MSEVETSGDSIPLIDLRDLHGPN-RADIINQFAHACSS 68

Query: 90  WGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFA 149
           +GFFQ+ NH +P++   +++   R F  Q    + K YS D  K  R +++F++ K + +
Sbjct: 69  YGFFQIKNHGVPEETIKKMMNVAREFFHQSESERVKHYSADTKKTTRLSTSFNVSKEKVS 128

Query: 150 NWRDTLSCLMAPNPPPPEEYPEA 172
           NWRD L     P     EE+P  
Sbjct: 129 NWRDFLRLHCYPIEDFIEEWPST 151

Length = 348
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 188
PLN02947 374 oxidoreductase 100.0
PLN02904 357 oxidoreductase 100.0
PLN02758 361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02216 357 protein SRG1 100.0
PLN02393 362 leucoanthocyanidin dioxygenase like protein 100.0
PLN03178 360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02912 348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515 358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02639 337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254 358 gibberellin 3-beta-dioxygenase 100.0
PLN00417 348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.98
PLN02276 361 gibberellin 20-oxidase 99.97
PLN02704 335 flavonol synthase 99.97
KOG0143 322 consensus Iron/ascorbate family oxidoreductases [S 99.97
PLN02750 345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.97
PTZ00273 320 oxidase reductase; Provisional 99.96
PLN02485 329 oxidoreductase 99.96
COG3491 322 PcbC Isopenicillin N synthase and related dioxygen 99.95
PLN03176120 flavanone-3-hydroxylase; Provisional 99.95
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.95
PLN02997 325 flavonol synthase 99.95
PLN03002 332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.95
PLN02299 321 1-aminocyclopropane-1-carboxylate oxidase 99.95
PLN02403 303 aminocyclopropanecarboxylate oxidase 99.94
PLN02156 335 gibberellin 2-beta-dioxygenase 99.93
PLN02984 341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.92
PLN02365 300 2-oxoglutarate-dependent dioxygenase 99.91
PLN03001 262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 99.13
>PLN02947 oxidoreductase Back     alignment and domain information 
Probab=100.00  E-value=8.9e-36  Score=254.10  Aligned_cols=164  Identities=30%  Similarity=0.529  Sum_probs=132.9

Q ss_pred             cccHHHHHHCCCCCCCCcccCCCCCCCcccccc---CCCCCCcceeeCCCCCCchhHHHHHHHHHHHHhhccceEeecCC
Q 048821           23 KAGVKGLVDSGIQSVPKFFVAPSEETCNEKSDL---RHAHFNVPIIDLRDIDKDGVRCEIVKEIGIASSKWGFFQVVNHD   99 (188)
Q Consensus        23 ~~~v~~l~~~~~~~vP~~fi~p~~~~p~~~~~~---~~~~~~iPvIDls~l~~~~~~~~~~~~l~~Ac~~~GFF~v~nHG   99 (188)
                      .++||.|+++|+.+||++||+|++++|......   .....+||||||+.+.+ ..+..++++|++||++||||||+|||
T Consensus        25 ~~~v~~l~~~~~~~vp~~yv~p~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~-~~~~~~~~~l~~Ac~~~GFF~v~nHG  103 (374)
T PLN02947         25 QKGVKHLCDSGITKVPAKYILPASDRPGLTRDEAIAASGNLKLPVIDLAELRG-SNRPHVLATLAAACREYGFFQVVNHG  103 (374)
T ss_pred             ecCHHHHHhcCCCcCCHHhcCCchhccccccccccccCCCCCCCeEECcccCC-ccHHHHHHHHHHHHHHCcEEEEEcCC
Confidence            368999999999999999999999988531100   01345799999998853 34778999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhCCChhhhhcccccCCCCceeeccCCccCcCCCCCccccccccccCC----CCCCCCChHHHHH
Q 048821          100 IPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNSNFDLYKARFANWRDTLSCLMAPN----PPPPEEYPEACRY  175 (188)
Q Consensus       100 I~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~p~----~~wP~~~p~~fr~  175 (188)
                      ||.++++++++.+++||+||.|+|+++.........||+...........+|+|.+.+...|.    +.||+ .|++||+
T Consensus       104 Ip~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~WP~-~~~~fr~  182 (374)
T PLN02947        104 VPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKLVCHPLSDVLPHWPS-SPADLRK  182 (374)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceeeecCCcccccccCcc-chHHHHH
Confidence            999999999999999999999999998644333456887654433456689999988765552    37996 5678999


Q ss_pred             HHHHHHHHHhhcC
Q 048821          176 AFLHLLNNIQRRA  188 (188)
Q Consensus       176 ~~~~Y~~~~~~La  188 (188)
                      ++++|+++|++|+
T Consensus       183 ~~~~Y~~~~~~L~  195 (374)
T PLN02947        183 VAATYAKATKRLF  195 (374)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999874

>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
1gp5_A 356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-09
2brt_A 355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 5e-09
1gp4_A 356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 1e-08
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 12/131 (9%)
Query: 26  VKGLVDSGIQSVPKFFVAPSEE--TCNE--KSDLRHAHFNVPIIDLRDIDKD--GVRCEI 79
           V+ L  SGI S+PK ++ P EE  + N+    + +     VP IDL++I+ D   +R   
Sbjct: 7   VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 80  VKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVRFNS 139
           ++E+  AS  WG   ++NH IP D+ + V ++   F       KEK+ +   T K++   
Sbjct: 67  IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG-- 124
Query: 140 NFDLYKARFAN 150
               Y ++ AN
Sbjct: 125 ----YGSKLAN 131
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
1gp6_A 356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 6e-44
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 3e-31
1dcs_A 311 Deacetoxycephalosporin C synthase; ferrous oxygena 4e-16
1odm_A 331 Isopenicillin N synthase; antibiotic biosynthesis, 8e-16
3oox_A 312 Putative 2OG-Fe(II) oxygenase family protein; stru 7e-15
3on7_A 280 Oxidoreductase, iron/ascorbate family; structural 6e-13
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  148 bits (376), Expect = 6e-44
 Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 11/160 (6%)

Query: 26  VKGLVDSGIQSVPKFFVAPSEE----TCNEKSDLRHAHFNVPIIDLRDIDKD--GVRCEI 79
           V+ L  SGI S+PK ++ P EE          + +     VP IDL++I+ D   +R   
Sbjct: 7   VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66

Query: 80  VKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVR-FN 138
           ++E+  AS  WG   ++NH IP D+ + V ++   F       KEK+ +   T K++ + 
Sbjct: 67  IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126

Query: 139 SNFDLYKARFANWRDTLSCLMAP----NPPPPEEYPEACR 174
           S      +    W D    L  P    +     + P    
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI 166
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query188
1gp6_A 356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A 312 Putative 2OG-Fe(II) oxygenase family protein; stru 99.96
1dcs_A 311 Deacetoxycephalosporin C synthase; ferrous oxygena 99.95
1w9y_A 319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 99.95
3on7_A 280 Oxidoreductase, iron/ascorbate family; structural 99.95
1odm_A 331 Isopenicillin N synthase; antibiotic biosynthesis, 99.94
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=1e-36  Score=257.83  Aligned_cols=165  Identities=27%  Similarity=0.384  Sum_probs=134.9

Q ss_pred             cccHHHHHHCCCCCCCCcccCCCCCCCccccc--cC--CCCCCcceeeCCCCCC-c-hhHHHHHHHHHHHHhhccceEee
Q 048821           23 KAGVKGLVDSGIQSVPKFFVAPSEETCNEKSD--LR--HAHFNVPIIDLRDIDK-D-GVRCEIVKEIGIASSKWGFFQVV   96 (188)
Q Consensus        23 ~~~v~~l~~~~~~~vP~~fi~p~~~~p~~~~~--~~--~~~~~iPvIDls~l~~-~-~~~~~~~~~l~~Ac~~~GFF~v~   96 (188)
                      ..+||+|+++|+.+||++|++|++++|.....  ..  ....+||||||+.+.+ + ..|.+++++|++||++||||||+
T Consensus         4 ~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~   83 (356)
T 1gp6_A            4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   83 (356)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             cccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEe
Confidence            46899999999999999999998887753210  00  0124699999999864 3 55888999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCC-CCceeeccCCccCcCCCCCccccccccccCC-----CCCCCCCh
Q 048821           97 NHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDK-TKKVRFNSNFDLYKARFANWRDTLSCLMAPN-----PPPPEEYP  170 (188)
Q Consensus        97 nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~-~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~p~-----~~wP~~~p  170 (188)
                      ||||+.++++++++.+++||+||.|+|+++..... ...+||+........+..||+|+|++...|.     +.||. .+
T Consensus        84 nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~-~~  162 (356)
T 1gp6_A           84 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK-TP  162 (356)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCC-SS
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCC-cc
Confidence            99999999999999999999999999999865433 3578998776555566789999999876542     37996 45


Q ss_pred             HHHHHHHHHHHHHHhhcC
Q 048821          171 EACRYAFLHLLNNIQRRA  188 (188)
Q Consensus       171 ~~fr~~~~~Y~~~~~~La  188 (188)
                      ++||+++++|+++|.+|+
T Consensus       163 ~~fr~~~~~y~~~~~~l~  180 (356)
T 1gp6_A          163 SDYIEATSEYAKCLRLLA  180 (356)
T ss_dssp             TTHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHH
Confidence            579999999999999874
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 188
d1gp6a_ 349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-23
d1w9ya1 307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-17
d1dcsa_ 311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 4e-16
d1odma_ 329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 8e-12
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 93.5 bits (231), Expect = 1e-23
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 7/154 (4%)

Query: 24  AGVKGLVDSGIQSVPKFFVAPSEE----TCNEKSDLRHAHFNVPIIDLRDIDKD--GVRC 77
             V+ L  SGI S+PK ++ P EE          + +     VP IDL++I+ D   +R 
Sbjct: 4   ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRE 63

Query: 78  EIVKEIGIASSKWGFFQVVNHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTKKVR- 136
             ++E+  AS  WG   ++NH IP D+ + V ++   F       KEK+ +   T K++ 
Sbjct: 64  NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 123

Query: 137 FNSNFDLYKARFANWRDTLSCLMAPNPPPPEEYP 170
           + S      +    W D    L  P         
Sbjct: 124 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIW 157
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query188
d1gp6a_ 349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1 307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 99.93
d1dcsa_ 311 Deacetoxycephalosporin C synthase {Streptomyces cl 99.91
d1odma_ 329 Isopenicillin N synthase {Emericella nidulans [Tax 99.87
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=8.4e-35  Score=242.48  Aligned_cols=165  Identities=27%  Similarity=0.385  Sum_probs=130.4

Q ss_pred             cccHHHHHHCCCCCCCCcccCCCCCCCccccc----cCCCCCCcceeeCCCCCC-c-hhHHHHHHHHHHHHhhccceEee
Q 048821           23 KAGVKGLVDSGIQSVPKFFVAPSEETCNEKSD----LRHAHFNVPIIDLRDIDK-D-GVRCEIVKEIGIASSKWGFFQVV   96 (188)
Q Consensus        23 ~~~v~~l~~~~~~~vP~~fi~p~~~~p~~~~~----~~~~~~~iPvIDls~l~~-~-~~~~~~~~~l~~Ac~~~GFF~v~   96 (188)
                      ...||+|+++|+.+||++||||++++|.....    ....+.+||||||+.+.+ + ..|++++++|++||++||||||+
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~   82 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   82 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            45899999999999999999999998865311    123456899999999974 4 67889999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhhCCChhhhhcccccCCCC-ceeeccCCccCcCCCCCccccccccccC-----CCCCCCCCh
Q 048821           97 NHDIPQDIADEVIESIRRFNEQPNHVKEKFYSRDKTK-KVRFNSNFDLYKARFANWRDTLSCLMAP-----NPPPPEEYP  170 (188)
Q Consensus        97 nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~-~~Gy~~~~~~~~~~~~dw~E~~~~~~~p-----~~~wP~~~p  170 (188)
                      ||||+.++++++++++++||+||.|+|+++....... ..||+...........+|.+.+.....+     .+.||.. +
T Consensus        83 nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~-~  161 (349)
T d1gp6a_          83 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKT-P  161 (349)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCS-S
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccc-c
Confidence            9999999999999999999999999999986443222 3345554444455667787765443322     1379864 4


Q ss_pred             HHHHHHHHHHHHHHhhcC
Q 048821          171 EACRYAFLHLLNNIQRRA  188 (188)
Q Consensus       171 ~~fr~~~~~Y~~~~~~La  188 (188)
                      +.|++.+++|+++|.+|+
T Consensus       162 ~~f~e~~~~~~~~~~~la  179 (349)
T d1gp6a_         162 SDYIEATSEYAKCLRLLA  179 (349)
T ss_dssp             TTHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHH
Confidence            579999999999998874
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure