List of all proteins in Citrus Sinensis genome

The function and structure prediction results are summarized in the table below.

For function prediction, we show the annotation transfered from the closest relatd SWISS-PROT entry. To see the subset of proteins with 'confident' swiss-prot hits, please click here

For structure prediction, we show the best template structure. To see the subset of proteins with structure template availabe, please click here

For functional classification, we show the closest matched entries of COG, Pfam and GO.

For list of proteins that have COG hits, please click here

For list of proteins that have Pfam hits, please click here

For list of proteins that have GO hits, please click here

Clicking on a protein ID navigates to the complete search results, including Secondary Structure Prediction, Local Sequence Features Prediction, Sequence Search Results (Blast, RPS-Blast and HHsearch), GO Term Prediction and Enzyme Commission Number Prediction. On the webpage, you will obtain the analsys results of the close homologs suitable for annotation transfer, the functionally associated proteins, the conserved domains present in the sequence, the homologous structure templates and the homologous structure domains.

The full list is partitioned and displayed on multiple webpages. To download a flat file of the full list, please click here

A simple query using a name or keyword can be done using the search box below. For protein ID search, please use name format like '1g002345m'. For GO term search, please use name format like 'GO:0005737'. For COG search, please use name format like 'COG3063'. For Pfam search, please use name format like 'PF06418'. You can also input keywords like 'SUI1 Translation initiation factor 1'

      

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List of proteins 1-1000 of total 46147 proteins shown below 
Protein ID
Link to full report
 Length
 Functional Annotation
transferred from the best Swissport hit
Link to Swissprot
 The Best COG hit
Link to Swissprot
 The Best Pfam hit
Link to Pfam
 The Best GO hit
Link to GO
 The Best Template
Link to PDB
1g015230m 411 ID: Q3ALU9 (confident match)
name: Glutamate-1-semialdehyde 2,1-aminomutase
def:
source: Synechococcus sp. (strain CC9605) (taxid: 110662)
 ID: COG0001
name: HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
1-411
 ID: PF00202
score: 100.00 (hhsearch)
coverage over query:
21-346
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3fq8 chain A
(very confident match)
coverage over query:
1-411
1g011856m 476 ID: Q3ALU9 (confident match)
name: Glutamate-1-semialdehyde 2,1-aminomutase
def:
source: Synechococcus sp. (strain CC9605) (taxid: 110662)
 ID: COG0001
name: HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
49-475
 ID: PF00202
score: 100.00 (hhsearch)
coverage over query:
84-409
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3fq8 chain A
(very confident match)
coverage over query:
49-473
1g011959m 474 ID: Q3ALU9 (confident match)
name: Glutamate-1-semialdehyde 2,1-aminomutase
def:
source: Synechococcus sp. (strain CC9605) (taxid: 110662)
 ID: COG0001
name: HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
49-474
 ID: PF00202
score: 100.00 (hhsearch)
coverage over query:
84-409
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3fq8 chain A
(very confident match)
coverage over query:
49-474
1g021865m 306 ID: Q6AV34 (portable match)
name: Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0002
name: ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
62-305
 ID: PF01118
score: 99.96 (hhsearch)
coverage over query:
65-202
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 1xyg chain A
(very confident match)
coverage over query:
59-305
1g015441m 406 ID: Q6AV34 (confident match)
name: Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0002
name: ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
62-406
 ID: PF02774
score: 99.97 (hhsearch)
coverage over query:
219-377
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 1xyg chain A
(very confident match)
coverage over query:
63-406
1g015097m 413 no hit ID: COG0003
name: ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
score:100.00 (hhsearch)
coverage over query:
89-413
 ID: PF02374
score: 100.00 (hhsearch)
coverage over query:
90-413
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2woo chain A
(very confident match)
coverage over query:
79-413
1g043873m 413 no hit ID: COG0003
name: ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
score:100.00 (hhsearch)
coverage over query:
86-413
 ID: PF02374
score: 100.00 (hhsearch)
coverage over query:
87-413
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2woo chain A
(very confident match)
coverage over query:
77-413
1g015123m 413 no hit ID: COG0003
name: ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
score:100.00 (hhsearch)
coverage over query:
89-413
 ID: PF02374
score: 100.00 (hhsearch)
coverage over query:
90-413
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2woo chain A
(very confident match)
coverage over query:
79-413
1g015096m 413 no hit ID: COG0003
name: ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
score:100.00 (hhsearch)
coverage over query:
89-413
 ID: PF02374
score: 100.00 (hhsearch)
coverage over query:
90-413
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2woo chain A
(very confident match)
coverage over query:
79-413
1g015128m 413 no hit ID: COG0003
name: ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
score:100.00 (hhsearch)
coverage over query:
89-413
 ID: PF02374
score: 100.00 (hhsearch)
coverage over query:
90-413
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2woo chain A
(very confident match)
coverage over query:
79-413
1g016417m 390 no hit ID: COG0003
name: ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
score:100.00 (hhsearch)
coverage over query:
89-390
 ID: PF02374
score: 100.00 (hhsearch)
coverage over query:
90-390
 ID: GO:0005739 (portable match)
name: mitochondrion
 PDB ID: 2woo chain A
(very confident match)
coverage over query:
80-390
1g023886m 276 ID: Q9P7F8 (portable match)
name: ATPase get3
def: ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0003
name: ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
score:100.00 (hhsearch)
coverage over query:
28-267
 ID: PF02374
score: 100.00 (hhsearch)
coverage over query:
28-270
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2woo chain A
(very confident match)
coverage over query:
11-266
1g017873m 365 ID: Q9P7F8 (portable match)
name: ATPase get3
def: ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0003
name: ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
score:100.00 (hhsearch)
coverage over query:
27-330
 ID: PF02374
score: 100.00 (hhsearch)
coverage over query:
28-323
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2woo chain A
(very confident match)
coverage over query:
11-331
1g013114m 449 ID: Q6DYE4 (portable match)
name: Uncharacterized protein At1g26090, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0003
name: ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
score:100.00 (hhsearch)
coverage over query:
48-378
 ID: PF02374
score: 100.00 (hhsearch)
coverage over query:
49-367
 ID: GO:0010287 (confident match)
name: plastoglobule
 PDB ID: 3igf chain A
(very confident match)
coverage over query:
48-170,182-346,358-448
1g044901m 478 ID: Q84KJ6 (portable match)
name: Ammonium transporter 3 member 1
def: Involved in ammonium transport.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0004
name: AmtB Ammonia permease [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
18-443
 ID: PF00909
score: 100.00 (hhsearch)
coverage over query:
24-440
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 2b2h chain A
(very confident match)
coverage over query:
18-444
1g044092m 470 ID: Q84KJ6 (portable match)
name: Ammonium transporter 3 member 1
def: Involved in ammonium transport.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0004
name: AmtB Ammonia permease [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
22-447
 ID: PF00909
score: 100.00 (hhsearch)
coverage over query:
28-443
 ID: GO:0015398 (confident match)
name: high affinity secondary active ammonium transmembrane transporter activity
 PDB ID: 2b2h chain A
(very confident match)
coverage over query:
22-448
1g012033m 472 ID: Q84KJ6 (portable match)
name: Ammonium transporter 3 member 1
def: Involved in ammonium transport.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0004
name: AmtB Ammonia permease [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
25-446
 ID: PF00909
score: 100.00 (hhsearch)
coverage over query:
31-443
 ID: GO:0015398 (confident match)
name: high affinity secondary active ammonium transmembrane transporter activity
 PDB ID: 2b2h chain A
(very confident match)
coverage over query:
25-448
1g044779m 477 ID: Q84KJ6 (portable match)
name: Ammonium transporter 3 member 1
def: Involved in ammonium transport.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0004
name: AmtB Ammonia permease [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
22-447
 ID: PF00909
score: 100.00 (hhsearch)
coverage over query:
28-444
 ID: GO:0015398 (confident match)
name: high affinity secondary active ammonium transmembrane transporter activity
 PDB ID: 2b2h chain A
(very confident match)
coverage over query:
22-449
1g041074m 452 ID: Q84KJ6 (confident match)
name: Ammonium transporter 3 member 1
def: Involved in ammonium transport.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0004
name: AmtB Ammonia permease [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
10-446
 ID: PF00909
score: 100.00 (hhsearch)
coverage over query:
16-440
 ID: GO:0015398 (confident match)
name: high affinity secondary active ammonium transmembrane transporter activity
 PDB ID: 2b2h chain A
(very confident match)
coverage over query:
10-100,119-448
1g017570m 369 ID: Q84KJ7 (portable match)
name: Ammonium transporter 2 member 1
def: Involved in ammonium transport.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0004
name: AmtB Ammonia permease [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
21-360
 ID: PF00909
score: 100.00 (hhsearch)
coverage over query:
27-360
 ID: GO:0015398 (confident match)
name: high affinity secondary active ammonium transmembrane transporter activity
 PDB ID: 2b2h chain A
(very confident match)
coverage over query:
21-111,128-360
1g020780m 321 ID: Q84KJ7 (portable match)
name: Ammonium transporter 2 member 1
def: Involved in ammonium transport.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0004
name: AmtB Ammonia permease [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
21-320
 ID: PF00909
score: 100.00 (hhsearch)
coverage over query:
27-320
 ID: GO:0015398 (confident match)
name: high affinity secondary active ammonium transmembrane transporter activity
 PDB ID: 2b2h chain A
(very confident match)
coverage over query:
21-320
1g011335m 488 ID: Q84KJ6 (confident match)
name: Ammonium transporter 3 member 1
def: Involved in ammonium transport.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0004
name: AmtB Ammonia permease [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
21-450
 ID: PF00909
score: 100.00 (hhsearch)
coverage over query:
27-447
 ID: GO:0015696 (confident match)
name: ammonium transport
 PDB ID: 2b2h chain A
(very confident match)
coverage over query:
22-108,125-451
1g046160m 114 no hit ID: COG0004
name: AmtB Ammonia permease [Inorganic ion transport and metabolism]
score:99.96 (hhsearch)
coverage over query:
1-96
 ID: PF00909
score: 99.92 (hhsearch)
coverage over query:
1-91
 ID: GO:0015696 (portable match)
name: ammonium transport
 PDB ID: 3b9w chain A
(confident match)
coverage over query:
1-107
1g044248m 489 ID: P54144 (confident match)
name: Ammonium transporter 1 member 1
def: High affinity ammonium transporter probably involved in ammonium uptake from the soil, long-distance transport to the shoots and re-uptake of apoplastic ammonium that derives from photorespiration in shoots. Contributes with AMT1-3 to the overall ammonium uptake capacity in roots under nitrogen-deficiency conditions.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0004
name: AmtB Ammonia permease [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
46-466
 ID: PF00909
score: 100.00 (hhsearch)
coverage over query:
51-461
 ID: GO:0072488 (confident match)
name: ammonium transmembrane transport
 PDB ID: 3b9w chain A
(very confident match)
coverage over query:
64-399,410-464
1g040022m 490 ID: Q6K9G1 (confident match)
name: Ammonium transporter 1 member 2
def: Ammonium transporter probably involved in ammonium uptake from the soil and ammonium uptake and retrieval in the vascular system.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0004
name: AmtB Ammonia permease [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
44-478
 ID: PF00909
score: 100.00 (hhsearch)
coverage over query:
49-473
 ID: GO:0072488 (confident match)
name: ammonium transmembrane transport
 PDB ID: 3b9w chain A
(very confident match)
coverage over query:
62-188,199-272,286-396
,411-411,422-476
1g043627m 504 ID: Q9ZPJ8 (confident match)
name: Ammonium transporter 1 member 2
def: Ammonium transporter probably involved in ammonium uptake from the soil.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0004
name: AmtB Ammonia permease [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
44-477
 ID: PF00909
score: 100.00 (hhsearch)
coverage over query:
49-472
 ID: GO:0072488 (confident match)
name: ammonium transmembrane transport
 PDB ID: 3b9w chain A
(very confident match)
coverage over query:
62-270,284-395,410-410
,421-474
1g048011m 104 no hit ID: COG0004
name: AmtB Ammonia permease [Inorganic ion transport and metabolism]
score:99.96 (hhsearch)
coverage over query:
1-103
 ID: PF00909
score: 99.93 (hhsearch)
coverage over query:
2-103
 ID: GO:0072488 (portable match)
name: ammonium transmembrane transport
 PDB ID: 3b9w chain A
(confident match)
coverage over query:
2-101
1g011046m 495 ID: Q11136 (portable match)
name: Xaa-Pro dipeptidase
def: Splits dipeptides with a prolyl or hydroxyprolyl residue in the C-terminal position. Plays an important role in collagen metabolism because of the high level of iminoacids in collagen.
source: Mus musculus (taxid: 10090)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
10-476
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
194-460
 ID: GO:0002119 (portable match)
name: nematode larval development
 PDB ID: 2iw2 chain A
(very confident match)
coverage over query:
4-491
1g011203m 491 ID: Q11136 (portable match)
name: Xaa-Pro dipeptidase
def: Splits dipeptides with a prolyl or hydroxyprolyl residue in the C-terminal position. Plays an important role in collagen metabolism because of the high level of iminoacids in collagen.
source: Mus musculus (taxid: 10090)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
10-472
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
190-456
 ID: GO:0002119 (portable match)
name: nematode larval development
 PDB ID: 2iw2 chain A
(very confident match)
coverage over query:
4-487
1g011536m 483 ID: B7ZMP1 (portable match)
name: Probable Xaa-Pro aminopeptidase 3
def:
source: Mus musculus (taxid: 10090)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
51-459
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
218-442
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
207-450
1g013513m 441 ID: B7ZMP1 (portable match)
name: Probable Xaa-Pro aminopeptidase 3
def:
source: Mus musculus (taxid: 10090)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
8-417
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
176-400
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
165-408
1g016073m 396 ID: Q11136 (portable match)
name: Xaa-Pro dipeptidase
def: Splits dipeptides with a prolyl or hydroxyprolyl residue in the C-terminal position. Plays an important role in collagen metabolism because of the high level of iminoacids in collagen.
source: Mus musculus (taxid: 10090)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
10-395
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
194-395
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2iw2 chain A
(very confident match)
coverage over query:
4-395
1g008151m 576 ID: Q4WUD3 (portable match)
name: Probable Xaa-Pro aminopeptidase P
def: Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides.
source: Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
162-558
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
317-554
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3ctz chain A
(very confident match)
coverage over query:
2-342,365-575
1g006890m 627 ID: Q4WUD3 (portable match)
name: Probable Xaa-Pro aminopeptidase P
def: Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides.
source: Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
163-580
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
317-554
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3ctz chain A
(very confident match)
coverage over query:
2-343,365-626
1g006359m 648 ID: Q4WUD3 (portable match)
name: Probable Xaa-Pro aminopeptidase P
def: Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides.
source: Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
164-602
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
338-575
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3ctz chain A
(very confident match)
coverage over query:
2-195,217-363,386-647
1g008347m 569 ID: Q4WUD3 (portable match)
name: Probable Xaa-Pro aminopeptidase P
def: Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides.
source: Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
104-520
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
259-496
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3ctz chain A
(very confident match)
coverage over query:
1-283,306-568
1g007222m 612 ID: Q4WUD3 (portable match)
name: Probable Xaa-Pro aminopeptidase P
def: Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides.
source: Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
147-563
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
302-539
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3ctz chain A
(very confident match)
coverage over query:
7-326,349-611
1g016563m 387 no hit ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
52-387
 ID: PF00557
score: 99.97 (hhsearch)
coverage over query:
218-387
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3q6d chain A
(very confident match)
coverage over query:
55-79,95-360,374-387
1g009505m 533 ID: A2QGR5 (portable match)
name: Probable Xaa-Pro aminopeptidase P
def: Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides.
source: Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
69-483
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
242-459
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3ctz chain A
(very confident match)
coverage over query:
6-192,220-532
1g009507m 533 ID: A2QGR5 (portable match)
name: Probable Xaa-Pro aminopeptidase P
def: Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides.
source: Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
69-483
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
242-459
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3ctz chain A
(very confident match)
coverage over query:
6-192,220-532
1g005523m 692 ID: D1ZKF3 (portable match)
name: Probable Xaa-Pro aminopeptidase P
def: Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides.
source: Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) (taxid: 771870)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
245-662
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
419-636
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3ctz chain A
(very confident match)
coverage over query:
83-380,400-689
1g005915m 670 ID: D1ZKF3 (portable match)
name: Probable Xaa-Pro aminopeptidase P
def: Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides.
source: Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) (taxid: 771870)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
245-664
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
419-636
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3ctz chain A
(very confident match)
coverage over query:
79-368,396-666
1g005183m 710 ID: Q4WUD3 (portable match)
name: Probable Xaa-Pro aminopeptidase P
def: Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides.
source: Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
246-662
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
419-636
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3ctz chain A
(very confident match)
coverage over query:
79-368,396-709
1g015779m 400 no hit ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:99.80 (hhsearch)
coverage over query:
163-400
 ID: PF01321
score: 99.70 (hhsearch)
coverage over query:
4-147
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3ctz chain A
(very confident match)
coverage over query:
2-343,366-399
1g024996m 259 ID: Q9CN04 (portable match)
name: Ribosomal RNA small subunit methyltransferase I
def: Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
source: Pasteurella multocida (strain Pm70) (taxid: 272843)
 ID: COG0007
name: CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
79-255
 ID: PF00590
score: 99.97 (hhsearch)
coverage over query:
82-257
 ID: GO:0006261 (portable match)
name: DNA-dependent DNA replication
 PDB ID: 3kwp chain A
(very confident match)
coverage over query:
78-258
1g016852m 381 no hit ID: COG0007
name: CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
125-364
 ID: PF00590
score: 100.00 (hhsearch)
coverage over query:
128-341
 ID: GO:0019354 (confident match)
name: siroheme biosynthetic process
 PDB ID: 1ve2 chain A
(very confident match)
coverage over query:
125-364
1g007060m 619 ID: B2TU51 (portable match)
name: Glutamine--tRNA ligase
def:
source: Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) (taxid: 344609)
 ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
97-594
 ID: PF00749
score: 100.00 (hhsearch)
coverage over query:
96-417
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2hz7 chain A
(very confident match)
coverage over query:
83-617
1g012516m 462 ID: B2TU51 (portable match)
name: Glutamine--tRNA ligase
def:
source: Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) (taxid: 344609)
 ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-437
 ID: PF00749
score: 100.00 (hhsearch)
coverage over query:
1-223
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2hz7 chain A
(very confident match)
coverage over query:
1-460
1g043341m 758 ID: O13775 (portable match)
name: Probable glutamate--tRNA ligase, cytoplasmic
def: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
250-733
 ID: PF00749
score: 100.00 (hhsearch)
coverage over query:
249-546
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 4g6z chain A
(very confident match)
coverage over query:
241-413,426-490,507-561
1g006869m 628 ID: P52780 (portable match)
name: Glutamine--tRNA ligase
def:
source: Lupinus luteus (taxid: 3873)
 ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
275-627
 ID: PF00749
score: 100.00 (hhsearch)
coverage over query:
274-595
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2hz7 chain A
(very confident match)
coverage over query:
261-628
1g003764m 797 ID: P52780 (portable match)
name: Glutamine--tRNA ligase
def:
source: Lupinus luteus (taxid: 3873)
 ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
275-772
 ID: PF00749
score: 100.00 (hhsearch)
coverage over query:
274-595
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2hz7 chain A
(very confident match)
coverage over query:
261-795
1g004119m 773 ID: P52780 (portable match)
name: Glutamine--tRNA ligase
def:
source: Lupinus luteus (taxid: 3873)
 ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
251-748
 ID: PF00749
score: 100.00 (hhsearch)
coverage over query:
250-571
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2hz7 chain A
(very confident match)
coverage over query:
237-771
1g003751m 798 ID: P52780 (portable match)
name: Glutamine--tRNA ligase
def:
source: Lupinus luteus (taxid: 3873)
 ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
276-773
 ID: PF00749
score: 100.00 (hhsearch)
coverage over query:
275-596
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2hz7 chain A
(very confident match)
coverage over query:
262-796
1g042647m 95 no hit ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:99.39 (hhsearch)
coverage over query:
4-87
 ID: PF00749
score: 99.14 (hhsearch)
coverage over query:
3-88
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2hz7 chain A
(confident match)
coverage over query:
2-87
1g004546m 745 ID: P52780 (portable match)
name: Glutamine--tRNA ligase
def:
source: Lupinus luteus (taxid: 3873)
 ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
275-702
 ID: PF00749
score: 100.00 (hhsearch)
coverage over query:
274-595
 ID: GO:0005875 (portable match)
name: microtubule associated complex
 PDB ID: 3aii chain A
(very confident match)
coverage over query:
233-642,655-705
1g008289m 571 ID: Q9FEA2 (confident match)
name: Glutamate--tRNA ligase, chloroplastic/mitochondrial
def: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
56-536
 ID: PF00749
score: 100.00 (hhsearch)
coverage over query:
55-372
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2o5r chain A
(very confident match)
coverage over query:
55-536
1g013441m 443 ID: Q9FEA2 (portable match)
name: Glutamate--tRNA ligase, chloroplastic/mitochondrial
def: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
56-436
 ID: PF00749
score: 100.00 (hhsearch)
coverage over query:
55-372
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3afh chain A
(very confident match)
coverage over query:
54-437
1g035795m 164 no hit ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:99.52 (hhsearch)
coverage over query:
1-117
 ID: PF03950
score: 99.80 (hhsearch)
coverage over query:
76-164
 no hit PDB ID: 2hz7 chain A
(confident match)
coverage over query:
1-164
1g026839m 232 no hit ID: COG0009
name: SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
24-220
 ID: PF01300
score: 100.00 (hhsearch)
coverage over query:
32-210
 ID: GO:0003676 (portable match)
name: nucleic acid binding
 PDB ID: 1jcu chain A
(very confident match)
coverage over query:
18-215
1g026381m 239 ID: P45103 (portable match)
name: Uncharacterized protein HI_1198
def:
source: Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)
 ID: COG0009
name: SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-225
 ID: PF01300
score: 100.00 (hhsearch)
coverage over query:
20-213
 ID: GO:0005737 (portable match)
name: cytoplasm
 PDB ID: 1jcu chain A
(very confident match)
coverage over query:
1-220
1g021316m 314 no hit ID: COG0009
name: SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
77-299
 ID: PF01300
score: 100.00 (hhsearch)
coverage over query:
95-288
 ID: GO:0005737 (portable match)
name: cytoplasm
 PDB ID: 1jcu chain A
(very confident match)
coverage over query:
75-301
1g031347m 161 no hit ID: COG0009
name: SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
score:99.87 (hhsearch)
coverage over query:
80-156
 ID: PF01300
score: 99.80 (hhsearch)
coverage over query:
99-156
 no hit PDB ID: 1jcu chain A
(confident match)
coverage over query:
79-155
1g032838m 132 no hit ID: COG0009
name: SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
score:99.55 (hhsearch)
coverage over query:
80-132
 no hit no hit PDB ID: 1jcu chain A
(confident match)
coverage over query:
79-132
1g032606m 137 no hit ID: COG0009
name: SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
score:99.61 (hhsearch)
coverage over query:
81-136
 no hit no hit PDB ID: 1k7j chain A
(confident match)
coverage over query:
80-135
1g019566m 339 ID: P46637 (confident match)
name: Arginase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0010
name: SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
32-339
 ID: PF00491
score: 100.00 (hhsearch)
coverage over query:
60-334
 ID: GO:0050897 (confident match)
name: cobalt ion binding
 PDB ID: 3m1r chain A
(very confident match)
coverage over query:
30-337
1g022685m 293 ID: P46637 (confident match)
name: Arginase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0010
name: SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
13-293
 ID: PF00491
score: 100.00 (hhsearch)
coverage over query:
14-288
 ID: GO:0050897 (very confident match)
name: cobalt ion binding
 PDB ID: 3m1r chain A
(very confident match)
coverage over query:
15-291
1g028588m 207 ID: P46637 (confident match)
name: Arginase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0010
name: SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-207
 ID: PF00491
score: 100.00 (hhsearch)
coverage over query:
2-202
 ID: GO:0050897 (confident match)
name: cobalt ion binding
 PDB ID: 3m1r chain A
(very confident match)
coverage over query:
2-205
1g022705m 293 ID: P46637 (confident match)
name: Arginase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0010
name: SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
13-293
 ID: PF00491
score: 100.00 (hhsearch)
coverage over query:
14-288
 ID: GO:0050897 (very confident match)
name: cobalt ion binding
 PDB ID: 3pzl chain A
(very confident match)
coverage over query:
13-293
1g022416m 297 ID: P46637 (portable match)
name: Arginase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0010
name: SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
33-295
 ID: PF00491
score: 100.00 (hhsearch)
coverage over query:
60-246
 ID: GO:0050897 (confident match)
name: cobalt ion binding
 PDB ID: 3m1r chain A
(very confident match)
coverage over query:
31-246,261-293
1g022718m 293 ID: P46637 (confident match)
name: Arginase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0010
name: SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
13-293
 ID: PF00491
score: 100.00 (hhsearch)
coverage over query:
14-288
 ID: GO:0050897 (very confident match)
name: cobalt ion binding
 PDB ID: 3m1r chain A
(very confident match)
coverage over query:
15-291
1g019525m 339 ID: P46637 (confident match)
name: Arginase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0010
name: SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
32-339
 ID: PF00491
score: 100.00 (hhsearch)
coverage over query:
60-334
 ID: GO:0050897 (confident match)
name: cobalt ion binding
 PDB ID: 3m1r chain A
(very confident match)
coverage over query:
30-337
1g019533m 339 ID: P46637 (confident match)
name: Arginase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0010
name: SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
32-339
 ID: PF00491
score: 100.00 (hhsearch)
coverage over query:
60-334
 ID: GO:0050897 (confident match)
name: cobalt ion binding
 PDB ID: 3m1r chain A
(very confident match)
coverage over query:
30-337
1g019572m 339 ID: P46637 (confident match)
name: Arginase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0010
name: SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
32-339
 ID: PF00491
score: 100.00 (hhsearch)
coverage over query:
60-334
 ID: GO:0050897 (confident match)
name: cobalt ion binding
 PDB ID: 3m1r chain A
(very confident match)
coverage over query:
30-337
1g024748m 263 ID: Q2HJ33 (portable match)
name: Obg-like ATPase 1
def: Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.
source: Bos taurus (taxid: 9913)
 ID: COG0012
name: Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
24-253
 ID: PF02421
score: 99.46 (hhsearch)
coverage over query:
26-129
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1ni3 chain A
(very confident match)
coverage over query:
1-253
1g018241m 359 ID: P0ABU4 (portable match)
name: GTP-dependent nucleic acid-binding protein EngD
def: GTP-dependent nucleic acid-binding protein which may act as a translation factor.
source: Shigella flexneri (taxid: 623)
 ID: COG0012
name: Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
55-359
 ID: PF02421
score: 99.85 (hhsearch)
coverage over query:
57-226
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1ni3 chain A
(very confident match)
coverage over query:
53-359
1g018809m 350 ID: Q2HJ33 (portable match)
name: Obg-like ATPase 1
def: Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.
source: Bos taurus (taxid: 9913)
 ID: COG0012
name: Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
23-349
 ID: PF06071
score: 99.89 (hhsearch)
coverage over query:
304-349
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2ohf chain A
(very confident match)
coverage over query:
1-349
1g016139m 394 ID: Q2HJ33 (portable match)
name: Obg-like ATPase 1
def: Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.
source: Bos taurus (taxid: 9913)
 ID: COG0012
name: Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
23-388
 ID: PF06071
score: 100.00 (hhsearch)
coverage over query:
304-387
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2ohf chain A
(very confident match)
coverage over query:
1-394
1g017295m 374 ID: Q2HJ33 (portable match)
name: Obg-like ATPase 1
def: Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.
source: Bos taurus (taxid: 9913)
 ID: COG0012
name: Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
23-368
 ID: PF06071
score: 100.00 (hhsearch)
coverage over query:
284-367
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2ohf chain A
(very confident match)
coverage over query:
1-374
1g015465m 406 ID: Q2HJ33 (portable match)
name: Obg-like ATPase 1
def: Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.
source: Bos taurus (taxid: 9913)
 ID: COG0012
name: Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
23-398
 ID: PF06071
score: 100.00 (hhsearch)
coverage over query:
304-397
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2ohf chain A
(very confident match)
coverage over query:
1-362
1g014450m 424 ID: P0ABU4 (portable match)
name: GTP-dependent nucleic acid-binding protein EngD
def: GTP-dependent nucleic acid-binding protein which may act as a translation factor.
source: Shigella flexneri (taxid: 623)
 ID: COG0012
name: Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
55-424
 ID: PF06071
score: 100.00 (hhsearch)
coverage over query:
340-423
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2dby chain A
(very confident match)
coverage over query:
57-424
1g012870m 454 ID: P0ABU4 (portable match)
name: GTP-dependent nucleic acid-binding protein EngD
def: GTP-dependent nucleic acid-binding protein which may act as a translation factor.
source: Shigella flexneri (taxid: 623)
 ID: COG0012
name: Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
55-422
 ID: PF06071
score: 100.00 (hhsearch)
coverage over query:
340-421
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2dby chain A
(very confident match)
coverage over query:
57-421
1g014539m 423 ID: P0ABU4 (portable match)
name: GTP-dependent nucleic acid-binding protein EngD
def: GTP-dependent nucleic acid-binding protein which may act as a translation factor.
source: Shigella flexneri (taxid: 623)
 ID: COG0012
name: Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
55-423
 ID: PF06071
score: 100.00 (hhsearch)
coverage over query:
339-422
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1ni3 chain A
(very confident match)
coverage over query:
54-423
1g001826m 1009 ID: P36428 (confident match)
name: Alanine--tRNA ligase
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
56-996
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
62-637
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2zze chain A
(very confident match)
coverage over query:
63-188,224-245,263-523
,538-741,758-797
1g001932m 995 ID: P36428 (confident match)
name: Alanine--tRNA ligase
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
56-994
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
62-632
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2zze chain A
(very confident match)
coverage over query:
53-190,224-249,264-554
,568-734,751-792
1g003144m 844 ID: P36428 (portable match)
name: Alanine--tRNA ligase
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
57-833
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
62-637
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2zze chain A
(very confident match)
coverage over query:
54-190,224-249,264-554
,568-741,758-799
1g002324m 936 ID: P36428 (confident match)
name: Alanine--tRNA ligase
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
57-919
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
62-637
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2zze chain A
(very confident match)
coverage over query:
55-190,224-245,263-554
,568-741,758-799
1g002171m 957 ID: P36428 (confident match)
name: Alanine--tRNA ligase
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
57-955
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
62-637
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2zze chain A
(very confident match)
coverage over query:
56-190,224-249,264-554
,568-741,758-799
1g002583m 904 ID: P36428 (confident match)
name: Alanine--tRNA ligase
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-903
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
1-539
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2zze chain A
(very confident match)
coverage over query:
1-90,126-147,165-425
,440-643,660-699
1g001871m 1002 ID: P36428 (confident match)
name: Alanine--tRNA ligase
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
56-1001
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
62-637
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2zze chain A
(very confident match)
coverage over query:
53-190,224-249,264-554
,568-741,758-799
1g002074m 972 ID: P36428 (confident match)
name: Alanine--tRNA ligase
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
56-971
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
62-637
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2zze chain A
(very confident match)
coverage over query:
50-190,224-249,264-554
,568-741,758-799
1g003915m 787 ID: P36428 (portable match)
name: Alanine--tRNA ligase
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
58-784
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
62-637
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2zze chain A
(very confident match)
coverage over query:
54-190,224-249,264-554
,568-741,758-784
1g002252m 947 ID: B9HQZ6 (confident match)
name: Probable alanine--tRNA ligase, chloroplastic
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
source: Populus trichocarpa (taxid: 3694)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
46-942
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
52-617
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2zze chain A
(very confident match)
coverage over query:
6-168,198-219,237-529
,543-762
1g004997m 720 ID: B9HQZ6 (portable match)
name: Probable alanine--tRNA ligase, chloroplastic
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
source: Populus trichocarpa (taxid: 3694)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
46-718
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
52-617
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2zze chain A
(very confident match)
coverage over query:
6-168,198-219,237-529
,543-718
1g002994m 860 ID: B9HQZ6 (confident match)
name: Probable alanine--tRNA ligase, chloroplastic
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
source: Populus trichocarpa (taxid: 3694)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-855
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
1-530
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2zze chain A
(very confident match)
coverage over query:
1-81,111-132,150-442
,456-675
1g004366m 759 ID: B9HQZ6 (portable match)
name: Probable alanine--tRNA ligase, chloroplastic
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
source: Populus trichocarpa (taxid: 3694)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
47-752
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
52-617
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2zze chain A
(very confident match)
coverage over query:
6-168,198-219,237-529
,543-752
1g009005m 546 ID: Q8K9Q7 (portable match)
name: Adenylosuccinate lyase
def:
source: Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)
 ID: COG0015
name: PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
87-532
 ID: PF00206
score: 100.00 (hhsearch)
coverage over query:
89-389
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2ptr chain A
(very confident match)
coverage over query:
76-530
1g013198m 448 ID: Q8K9Q7 (portable match)
name: Adenylosuccinate lyase
def:
source: Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)
 ID: COG0015
name: PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
87-447
 ID: PF00206
score: 100.00 (hhsearch)
coverage over query:
89-397
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2ptr chain A
(very confident match)
coverage over query:
76-447
1g013159m 448 ID: Q8K9Q7 (portable match)
name: Adenylosuccinate lyase
def:
source: Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)
 ID: COG0015
name: PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
87-442
 ID: PF00206
score: 100.00 (hhsearch)
coverage over query:
89-397
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2ptr chain A
(very confident match)
coverage over query:
76-409
1g018851m 349 ID: Q9T034 (portable match)
name: Probable phenylalanine--tRNA ligase alpha subunit
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0016
name: PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
99-349
 ID: PF01409
score: 100.00 (hhsearch)
coverage over query:
200-349
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3l4g chain A
(very confident match)
coverage over query:
1-349
1g012529m 461 ID: O48593 (confident match)
name: Asparagine--tRNA ligase, chloroplastic/mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-460
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
128-457
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3m4p chain A
(very confident match)
coverage over query:
11-460
1g012612m 460 ID: O48593 (confident match)
name: Asparagine--tRNA ligase, chloroplastic/mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-460
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
128-455
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3m4p chain A
(very confident match)
coverage over query:
10-459
1g008808m 553 ID: P15178 (portable match)
name: Aspartate--tRNA ligase, cytoplasmic
def: Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
93-553
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
227-549
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3i7f chain A
(very confident match)
coverage over query:
53-74,87-553
1g008405m 567 ID: Q9SW96 (confident match)
name: Asparagine--tRNA ligase, cytoplasmic 1
def: Potentially protective antigen in lymphatic filariasis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
27-566
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
146-562
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3m4p chain A
(very confident match)
coverage over query:
22-207,298-566
1g017368m 373 ID: Q9SW96 (portable match)
name: Asparagine--tRNA ligase, cytoplasmic 1
def: Potentially protective antigen in lymphatic filariasis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
27-371
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
145-369
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3m4p chain A
(very confident match)
coverage over query:
19-207,298-369
1g018229m 359 ID: Q9SW96 (portable match)
name: Asparagine--tRNA ligase, cytoplasmic 1
def: Potentially protective antigen in lymphatic filariasis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
27-358
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
146-358
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3m4p chain A
(very confident match)
coverage over query:
22-207,298-358
1g010544m 507 ID: Q9SW96 (confident match)
name: Asparagine--tRNA ligase, cytoplasmic 1
def: Potentially protective antigen in lymphatic filariasis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
27-505
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
146-505
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3m4p chain A
(very confident match)
coverage over query:
27-207,298-505
1g013865m 435 no hit ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
92-432
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
227-430
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3i7f chain A
(very confident match)
coverage over query:
54-75,86-434
1g013856m 435 no hit ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
92-432
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
227-430
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3i7f chain A
(very confident match)
coverage over query:
54-75,86-434
1g014856m 417 no hit ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
93-414
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
209-412
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3i7f chain A
(very confident match)
coverage over query:
54-75,86-416
1g036422m 142 no hit ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-139
 ID: PF00152
score: 99.98 (hhsearch)
coverage over query:
37-135
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1x54 chain A
(very confident match)
coverage over query:
2-139
1g006717m 634 ID: Q9SW95 (portable match)
name: Asparagine--tRNA ligase, cytoplasmic 2
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
137-633
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
216-629
 ID: GO:0009507 (confident match)
name: chloroplast
 PDB ID: 3m4p chain A
(very confident match)
coverage over query:
106-278,367-633
1g012426m 464 ID: A1S684 (portable match)
name: Asparagine--tRNA ligase
def:
source: Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) (taxid: 326297)
 ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-464
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
128-464
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3m4p chain A
(very confident match)
coverage over query:
10-189,220-464
1g011364m 487 ID: O48593 (confident match)
name: Asparagine--tRNA ligase, chloroplastic/mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-487
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
128-483
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3m4p chain A
(very confident match)
coverage over query:
10-189,220-486
1g011197m 491 ID: O48593 (confident match)
name: Asparagine--tRNA ligase, chloroplastic/mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-491
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
128-487
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3m4p chain A
(very confident match)
coverage over query:
10-189,220-490
1g047331m 102 no hit ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:98.86 (hhsearch)
coverage over query:
1-35
 ID: PF01336
score: 96.90 (hhsearch)
coverage over query:
1-35
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3m4p chain A
(confident match)
coverage over query:
1-36
1g010356m 512 ID: B1X0N5 (portable match)
name: Arginine--tRNA ligase
def:
source: Cyanothece sp. (strain ATCC 51142) (taxid: 43989)
 ID: COG0018
name: ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
5-512
 ID: PF00750
score: 100.00 (hhsearch)
coverage over query:
67-417
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1iq0 chain A
(very confident match)
coverage over query:
5-512
1g014355m 426 ID: B8HSK8 (portable match)
name: Arginine--tRNA ligase
def:
source: Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)
 ID: COG0018
name: ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-420
 ID: PF00750
score: 100.00 (hhsearch)
coverage over query:
110-421
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1iq0 chain A
(very confident match)
coverage over query:
11-422
1g008743m 555 ID: Q253D1 (portable match)
name: Arginine--tRNA ligase
def:
source: Chlamydophila felis (strain Fe/C-56) (taxid: 264202)
 ID: COG0018
name: ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-555
 ID: PF00750
score: 100.00 (hhsearch)
coverage over query:
110-460
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1iq0 chain A
(very confident match)
coverage over query:
11-555
1g008744m 555 ID: Q253D1 (portable match)
name: Arginine--tRNA ligase
def:
source: Chlamydophila felis (strain Fe/C-56) (taxid: 264202)
 ID: COG0018
name: ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-555
 ID: PF00750
score: 100.00 (hhsearch)
coverage over query:
110-460
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1iq0 chain A
(very confident match)
coverage over query:
11-555
1g007251m 611 ID: Q253D1 (portable match)
name: Arginine--tRNA ligase
def:
source: Chlamydophila felis (strain Fe/C-56) (taxid: 264202)
 ID: COG0018
name: ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
67-611
 ID: PF00750
score: 100.00 (hhsearch)
coverage over query:
166-516
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1iq0 chain A
(very confident match)
coverage over query:
67-611
1g010043m 519 ID: Q824H4 (portable match)
name: Arginine--tRNA ligase
def:
source: Chlamydophila caviae (strain GPIC) (taxid: 227941)
 ID: COG0018
name: ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-515
 ID: PF00750
score: 100.00 (hhsearch)
coverage over query:
110-460
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1iq0 chain A
(very confident match)
coverage over query:
11-514
1g010832m 499 ID: Q824H4 (portable match)
name: Arginine--tRNA ligase
def:
source: Chlamydophila caviae (strain GPIC) (taxid: 227941)
 ID: COG0018
name: ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-491
 ID: PF00750
score: 100.00 (hhsearch)
coverage over query:
110-460
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1iq0 chain A
(very confident match)
coverage over query:
11-490
1g045992m 213 no hit ID: COG0019
name: LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
score:99.84 (hhsearch)
coverage over query:
121-181
 ID: PF00278
score: 99.78 (hhsearch)
coverage over query:
118-181
 no hit PDB ID: 2oo0 chain A
(confident match)
coverage over query:
123-182
1g015304m 409 ID: O22616 (portable match)
name: Ornithine decarboxylase
def:
source: Solanum lycopersicum (taxid: 4081)
 ID: COG0019
name: LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
27-402
 ID: PF02784
score: 100.00 (hhsearch)
coverage over query:
38-284
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2oo0 chain A
(very confident match)
coverage over query:
5-404
1g045356m 419 ID: O22616 (portable match)
name: Ornithine decarboxylase
def:
source: Solanum lycopersicum (taxid: 4081)
 ID: COG0019
name: LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
47-410
 ID: PF02784
score: 100.00 (hhsearch)
coverage over query:
57-296
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2qgh chain A
(very confident match)
coverage over query:
48-410
1g037610m 405 ID: O22616 (portable match)
name: Ornithine decarboxylase
def:
source: Solanum lycopersicum (taxid: 4081)
 ID: COG0019
name: LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
47-393
 ID: PF02784
score: 100.00 (hhsearch)
coverage over query:
57-276
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2qgh chain A
(very confident match)
coverage over query:
27-394
1g012098m 471 ID: Q6ZG77 (confident match)
name: Probable diaminopimelate decarboxylase, chloroplastic
def: Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0019
name: LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
68-459
 ID: PF02784
score: 100.00 (hhsearch)
coverage over query:
98-348
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2qgh chain A
(very confident match)
coverage over query:
75-469
1g048797m 240 no hit ID: COG0019
name: LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-237
 ID: PF02784
score: 99.93 (hhsearch)
coverage over query:
1-138
 no hit PDB ID: 2oo0 chain A
(very confident match)
coverage over query:
2-237
1g039384m 104 ID: Q8S2T1 (portable match)
name: Dehydrodolichyl diphosphate synthase 6
def: Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0020
name: UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
score:100.00 (hhsearch)
coverage over query:
7-104
 ID: PF01255
score: 100.00 (hhsearch)
coverage over query:
7-103
 ID: GO:0000287 (portable match)
name: magnesium ion binding
 PDB ID: 1f75 chain A
(very confident match)
coverage over query:
7-103
1g044091m 275 no hit ID: COG0020
name: UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
score:100.00 (hhsearch)
coverage over query:
93-275
 ID: PF01255
score: 100.00 (hhsearch)
coverage over query:
101-275
 ID: GO:0005783 (portable match)
name: endoplasmic reticulum
 PDB ID: 3ugs chain B
(very confident match)
coverage over query:
92-275
1g045812m 105 no hit ID: COG0020
name: UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
score:99.97 (hhsearch)
coverage over query:
23-104
 ID: PF01255
score: 99.97 (hhsearch)
coverage over query:
31-103
 ID: GO:0005783 (portable match)
name: endoplasmic reticulum
 PDB ID: 1f75 chain A
(very confident match)
coverage over query:
18-103
1g017611m 368 ID: Q8S2T1 (portable match)
name: Dehydrodolichyl diphosphate synthase 6
def: Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0020
name: UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
score:100.00 (hhsearch)
coverage over query:
38-363
 ID: PF01255
score: 100.00 (hhsearch)
coverage over query:
46-363
 ID: GO:0016765 (portable match)
name: transferase activity, transferring alkyl or aryl (other than methyl) groups
 PDB ID: 3ugs chain B
(very confident match)
coverage over query:
37-186,202-202,288-363
1g038167m 292 ID: Q8S2T1 (portable match)
name: Dehydrodolichyl diphosphate synthase 6
def: Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0020
name: UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
score:100.00 (hhsearch)
coverage over query:
32-288
 ID: PF01255
score: 100.00 (hhsearch)
coverage over query:
40-287
 ID: GO:0044464 (portable match)
name: cell part
 PDB ID: 3ugs chain B
(very confident match)
coverage over query:
31-181,210-287
1g022957m 289 no hit ID: COG0020
name: UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
score:100.00 (hhsearch)
coverage over query:
65-256
 ID: PF01255
score: 100.00 (hhsearch)
coverage over query:
73-255
 ID: GO:0045547 (confident match)
name: dehydrodolichyl diphosphate synthase activity
 PDB ID: 3ugs chain B
(confident match)
coverage over query:
64-255
1g027207m 226 no hit ID: COG0020
name: UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
score:100.00 (hhsearch)
coverage over query:
65-226
 ID: PF01255
score: 100.00 (hhsearch)
coverage over query:
73-226
 ID: GO:0045547 (portable match)
name: dehydrodolichyl diphosphate synthase activity
 PDB ID: 1f75 chain A
(very confident match)
coverage over query:
64-226
1g028906m 202 no hit ID: COG0020
name: UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
score:97.53 (hhsearch)
coverage over query:
65-192
 ID: PF01255
score: 97.85 (hhsearch)
coverage over query:
82-194
 ID: GO:0045547 (portable match)
name: dehydrodolichyl diphosphate synthase activity
 PDB ID: 2vg3 chain A
(confident match)
coverage over query:
66-194
1g028893m 202 no hit ID: COG0020
name: UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
score:97.53 (hhsearch)
coverage over query:
65-192
 ID: PF01255
score: 97.85 (hhsearch)
coverage over query:
82-194
 ID: GO:0045547 (portable match)
name: dehydrodolichyl diphosphate synthase activity
 PDB ID: 2vg3 chain A
(confident match)
coverage over query:
66-194
1g025247m 255 no hit ID: COG0020
name: UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
score:100.00 (hhsearch)
coverage over query:
65-255
 ID: PF01255
score: 100.00 (hhsearch)
coverage over query:
73-255
 ID: GO:0045547 (confident match)
name: dehydrodolichyl diphosphate synthase activity
 PDB ID: 3ugs chain B
(confident match)
coverage over query:
64-255
1g025238m 255 no hit ID: COG0020
name: UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
score:100.00 (hhsearch)
coverage over query:
65-255
 ID: PF01255
score: 100.00 (hhsearch)
coverage over query:
73-255
 ID: GO:0045547 (confident match)
name: dehydrodolichyl diphosphate synthase activity
 PDB ID: 3ugs chain B
(confident match)
coverage over query:
64-255
1g006816m 630 ID: Q8YRU9 (portable match)
name: Transketolase
def:
source: Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)
 ID: COG0021
name: TktA Transketolase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-629
 ID: PF00456
score: 100.00 (hhsearch)
coverage over query:
2-299
 ID: GO:0005576 (portable match)
name: extracellular region
 PDB ID: 1r9j chain A
(very confident match)
coverage over query:
2-629
1g004495m 748 ID: F4IW47 (confident match)
name: Transketolase-2, chloroplastic
def: Catalyzes the reversible transfer of a two-carbon ketol group from fructose-6-phosphate or sedoheptulose-7-phosphate to glyceraldehyde-3-phosphate to yield xylulose-5-phosphate and erythrose-4-phosphate or ribose-5-phosphate, respectively (By similarity). Could act as a stress sensor involved in adaptation process.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0021
name: TktA Transketolase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
85-748
 ID: PF00456
score: 100.00 (hhsearch)
coverage over query:
89-421
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1itz chain A
(very confident match)
coverage over query:
74-746
1g004509m 748 ID: F4IW47 (confident match)
name: Transketolase-2, chloroplastic
def: Catalyzes the reversible transfer of a two-carbon ketol group from fructose-6-phosphate or sedoheptulose-7-phosphate to glyceraldehyde-3-phosphate to yield xylulose-5-phosphate and erythrose-4-phosphate or ribose-5-phosphate, respectively (By similarity). Could act as a stress sensor involved in adaptation process.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0021
name: TktA Transketolase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
85-748
 ID: PF00456
score: 100.00 (hhsearch)
coverage over query:
89-421
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1itz chain A
(very confident match)
coverage over query:
74-746
1g005021m 719 ID: F4IW47 (confident match)
name: Transketolase-2, chloroplastic
def: Catalyzes the reversible transfer of a two-carbon ketol group from fructose-6-phosphate or sedoheptulose-7-phosphate to glyceraldehyde-3-phosphate to yield xylulose-5-phosphate and erythrose-4-phosphate or ribose-5-phosphate, respectively (By similarity). Could act as a stress sensor involved in adaptation process.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0021
name: TktA Transketolase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
85-719
 ID: PF00456
score: 100.00 (hhsearch)
coverage over query:
89-392
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1itz chain A
(very confident match)
coverage over query:
75-718
1g004970m 721 ID: F4IW47 (confident match)
name: Transketolase-2, chloroplastic
def: Catalyzes the reversible transfer of a two-carbon ketol group from fructose-6-phosphate or sedoheptulose-7-phosphate to glyceraldehyde-3-phosphate to yield xylulose-5-phosphate and erythrose-4-phosphate or ribose-5-phosphate, respectively (By similarity). Could act as a stress sensor involved in adaptation process.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0021
name: TktA Transketolase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
85-721
 ID: PF00456
score: 100.00 (hhsearch)
coverage over query:
89-394
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1itz chain A
(very confident match)
coverage over query:
82-720
1g017410m 372 ID: P21839 (portable match)
name: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
def: The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
source: Bos taurus (taxid: 9913)
 ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
39-355
 ID: PF02779
score: 100.00 (hhsearch)
coverage over query:
38-215
 ID: GO:0003826 (confident match)
name: alpha-ketoacid dehydrogenase activity
 PDB ID: 2bfd chain B
(very confident match)
coverage over query:
36-355
1g021963m 305 ID: Q5SLR3 (portable match)
name: 2-oxoisovalerate dehydrogenase subunit beta
def: The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
source: Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) (taxid: 300852)
 ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
39-302
 ID: PF02779
score: 100.00 (hhsearch)
coverage over query:
38-215
 ID: GO:0003826 (portable match)
name: alpha-ketoacid dehydrogenase activity
 PDB ID: 2bfd chain B
(very confident match)
coverage over query:
37-304
1g017504m 370 ID: Q6Z1G7 (confident match)
name: Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial
def: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
36-361
 ID: PF02779
score: 100.00 (hhsearch)
coverage over query:
35-211
 ID: GO:0005730 (confident match)
name: nucleolus
 PDB ID: 2ozl chain B
(very confident match)
coverage over query:
33-361
1g020510m 325 ID: Q38799 (confident match)
name: Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial
def: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
36-318
 ID: PF02779
score: 100.00 (hhsearch)
coverage over query:
35-211
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2ozl chain B
(very confident match)
coverage over query:
33-318
1g017512m 370 ID: Q6Z1G7 (confident match)
name: Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial
def: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
36-361
 ID: PF02779
score: 100.00 (hhsearch)
coverage over query:
35-211
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2ozl chain B
(very confident match)
coverage over query:
33-361
1g024237m 270 ID: Q6Z1G7 (confident match)
name: Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial
def: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
36-269
 ID: PF02779
score: 100.00 (hhsearch)
coverage over query:
35-211
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2ozl chain B
(very confident match)
coverage over query:
34-269
1g017487m 370 ID: Q6Z1G7 (confident match)
name: Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial
def: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
36-361
 ID: PF02779
score: 100.00 (hhsearch)
coverage over query:
35-211
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2ozl chain B
(very confident match)
coverage over query:
33-361
1g017501m 370 ID: Q6Z1G7 (confident match)
name: Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial
def: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
36-361
 ID: PF02779
score: 100.00 (hhsearch)
coverage over query:
35-211
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2ozl chain B
(very confident match)
coverage over query:
33-361
1g017714m 367 ID: Q6Z1G7 (confident match)
name: Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial
def: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
36-362
 ID: PF02779
score: 100.00 (hhsearch)
coverage over query:
35-211
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2ozl chain B
(very confident match)
coverage over query:
36-354
1g017695m 367 ID: Q6Z1G7 (confident match)
name: Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial
def: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
36-362
 ID: PF02779
score: 100.00 (hhsearch)
coverage over query:
35-211
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2ozl chain B
(very confident match)
coverage over query:
36-354
1g017522m 370 ID: Q6Z1G7 (confident match)
name: Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial
def: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
36-361
 ID: PF02779
score: 100.00 (hhsearch)
coverage over query:
35-211
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2ozl chain B
(very confident match)
coverage over query:
33-361
1g017513m 370 ID: Q6Z1G7 (confident match)
name: Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial
def: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
36-361
 ID: PF02779
score: 100.00 (hhsearch)
coverage over query:
35-211
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2ozl chain B
(very confident match)
coverage over query:
33-361
1g015415m 407 ID: O64688 (confident match)
name: Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic
def: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
86-407
 ID: PF02779
score: 100.00 (hhsearch)
coverage over query:
85-261
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1w85 chain B
(very confident match)
coverage over query:
86-407
1g023935m 275 ID: P21839 (portable match)
name: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
def: The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
source: Bos taurus (taxid: 9913)
 ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
39-274
 ID: PF02779
score: 100.00 (hhsearch)
coverage over query:
38-215
 ID: GO:0055114 (portable match)
name: oxidation-reduction process
 PDB ID: 2bfd chain B
(very confident match)
coverage over query:
27-274
1g023945m 275 ID: P21839 (portable match)
name: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
def: The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
source: Bos taurus (taxid: 9913)
 ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
39-274
 ID: PF02779
score: 100.00 (hhsearch)
coverage over query:
38-215
 ID: GO:0055114 (portable match)
name: oxidation-reduction process
 PDB ID: 2bfd chain B
(very confident match)
coverage over query:
27-274
1g028409m 209 ID: Q6DH65 (portable match)
name: Density-regulated protein
def: May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.
source: Danio rerio (taxid: 7955)
 ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.90 (hhsearch)
coverage over query:
97-186
 ID: PF01253
score: 99.93 (hhsearch)
coverage over query:
99-181
 ID: GO:0003743 (portable match)
name: translation initiation factor activity
 PDB ID: 1d1r chain A
(confident match)
coverage over query:
101-188
1g029752m 188 ID: A2QHG9 (portable match)
name: Translation machinery-associated protein 22
def:
source: Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)
 ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.93 (hhsearch)
coverage over query:
92-178
 ID: PF01253
score: 99.93 (hhsearch)
coverage over query:
91-173
 ID: GO:0005737 (portable match)
name: cytoplasm
 PDB ID: 1d1r chain A
(confident match)
coverage over query:
93-180
1g010987m 496 no hit ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.79 (hhsearch)
coverage over query:
401-489
 ID: PF01253
score: 99.87 (hhsearch)
coverage over query:
402-485
 ID: GO:0005737 (portable match)
name: cytoplasm
 PDB ID: 2if1 chain A
(very confident match)
coverage over query:
384-490
1g010996m 496 no hit ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.79 (hhsearch)
coverage over query:
401-489
 ID: PF01253
score: 99.87 (hhsearch)
coverage over query:
402-485
 ID: GO:0005737 (portable match)
name: cytoplasm
 PDB ID: 2if1 chain A
(very confident match)
coverage over query:
384-490
1g010959m 496 no hit ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.79 (hhsearch)
coverage over query:
401-489
 ID: PF01253
score: 99.87 (hhsearch)
coverage over query:
402-485
 ID: GO:0005737 (portable match)
name: cytoplasm
 PDB ID: 2if1 chain A
(very confident match)
coverage over query:
384-490
1g011008m 496 no hit ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.79 (hhsearch)
coverage over query:
401-489
 ID: PF01253
score: 99.87 (hhsearch)
coverage over query:
402-485
 ID: GO:0005737 (portable match)
name: cytoplasm
 PDB ID: 2if1 chain A
(very confident match)
coverage over query:
384-490
1g029248m 196 ID: Q6CA08 (portable match)
name: Translation machinery-associated protein 22
def:
source: Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)
 ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.90 (hhsearch)
coverage over query:
97-186
 ID: PF01253
score: 99.93 (hhsearch)
coverage over query:
99-181
 ID: GO:0005739 (portable match)
name: mitochondrion
 PDB ID: 1d1r chain A
(confident match)
coverage over query:
101-188
1g033744m 112 ID: P32911 (portable match)
name: Eukaryotic translation initiation factor eIF-1
def: Additional factor that functions in concert with eIF-2 and the initiator tRNA in directing the ribosome to the proper start site of translation.
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.96 (hhsearch)
coverage over query:
1-110
 ID: PF01253
score: 99.95 (hhsearch)
coverage over query:
25-104
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2if1 chain A
(very confident match)
coverage over query:
1-112
1g033711m 113 ID: P41568 (confident match)
name: Protein translation factor SUI1 homolog 1
def: Probably involved in translation.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.96 (hhsearch)
coverage over query:
12-111
 ID: PF01253
score: 99.95 (hhsearch)
coverage over query:
25-105
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2if1 chain A
(very confident match)
coverage over query:
1-113
1g039810m 113 ID: Q0D5W6 (confident match)
name: Protein translation factor SUI1 homolog
def: Probably involved in translation.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.96 (hhsearch)
coverage over query:
12-111
 ID: PF01253
score: 99.95 (hhsearch)
coverage over query:
25-105
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2if1 chain A
(very confident match)
coverage over query:
1-113
1g010169m 516 no hit ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.78 (hhsearch)
coverage over query:
422-509
 ID: PF01253
score: 99.86 (hhsearch)
coverage over query:
422-505
 no hit PDB ID: 2if1 chain A
(very confident match)
coverage over query:
404-510
1g016183m 394 ID: P50580 (portable match)
name: Proliferation-associated protein 2G4
def: May play a role in a ERBB3-regulated signal transduction pathway. Seems be involved in growth regulation. Acts a corepressor of the androgen receptor (AR) and is regulated by the ERBB3 ligand neuregulin-1/heregulin (HRG). Inhibits transcription of some E2F1-regulated promoters, probably by recruiting histone acetylase (HAT) activity. Binds RNA. Associates with 28S, 18S and 5.8S mature rRNAs, several rRNA precursors and probably U3 small nucleolar RNA. May be involved in regulation of intermediate and late steps of rRNA processing. May be involved in ribosome assembly (By similarity). Mediates cap-independent translation of specific viral IRESs (internal ribosomal entry site). Together with PTBP1 is required for the translation initiation on the foot-and-mouth disease virus (FMDV) IRES.
source: Mus musculus (taxid: 10090)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
11-333
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
20-227
 ID: GO:0005730 (confident match)
name: nucleolus
 PDB ID: 2q8k chain A
(very confident match)
coverage over query:
8-371
1g016129m 394 ID: P50580 (portable match)
name: Proliferation-associated protein 2G4
def: May play a role in a ERBB3-regulated signal transduction pathway. Seems be involved in growth regulation. Acts a corepressor of the androgen receptor (AR) and is regulated by the ERBB3 ligand neuregulin-1/heregulin (HRG). Inhibits transcription of some E2F1-regulated promoters, probably by recruiting histone acetylase (HAT) activity. Binds RNA. Associates with 28S, 18S and 5.8S mature rRNAs, several rRNA precursors and probably U3 small nucleolar RNA. May be involved in regulation of intermediate and late steps of rRNA processing. May be involved in ribosome assembly (By similarity). Mediates cap-independent translation of specific viral IRESs (internal ribosomal entry site). Together with PTBP1 is required for the translation initiation on the foot-and-mouth disease virus (FMDV) IRES.
source: Mus musculus (taxid: 10090)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
11-333
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
20-227
 ID: GO:0005730 (confident match)
name: nucleolus
 PDB ID: 2q8k chain A
(very confident match)
coverage over query:
8-371
1g014386m 425 ID: Q56Y85 (confident match)
name: Methionine aminopeptidase 2B
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
106-425
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
114-315
 ID: GO:0005829 (confident match)
name: cytosol
 no hit
1g021917m 305 ID: Q9SLN5 (portable match)
name: Methionine aminopeptidase 1A
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
140-303
 ID: PF00557
score: 99.95 (hhsearch)
coverage over query:
149-297
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
99-302
1g026636m 235 ID: P0A5J2 (portable match)
name: Methionine aminopeptidase 2
def: Removes the N-terminal methionine from nascent proteins, when the penultimate amino acid is alanine or proline, but enzyme activity is remarkably low when the second residue is phenylalanine or leucine. With glycine at the second position, Map is more active with a tetrapeptide than with a tripeptide.
source: Mycobacterium tuberculosis (taxid: 1773)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-234
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
1-226
 ID: GO:0006555 (confident match)
name: methionine metabolic process
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
1-235
1g026698m 235 ID: P0A5J2 (portable match)
name: Methionine aminopeptidase 2
def: Removes the N-terminal methionine from nascent proteins, when the penultimate amino acid is alanine or proline, but enzyme activity is remarkably low when the second residue is phenylalanine or leucine. With glycine at the second position, Map is more active with a tetrapeptide than with a tripeptide.
source: Mycobacterium tuberculosis (taxid: 1773)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-234
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
1-226
 ID: GO:0006555 (confident match)
name: methionine metabolic process
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
1-235
1g026622m 235 ID: P0A5J2 (portable match)
name: Methionine aminopeptidase 2
def: Removes the N-terminal methionine from nascent proteins, when the penultimate amino acid is alanine or proline, but enzyme activity is remarkably low when the second residue is phenylalanine or leucine. With glycine at the second position, Map is more active with a tetrapeptide than with a tripeptide.
source: Mycobacterium tuberculosis (taxid: 1773)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-234
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
1-226
 ID: GO:0006555 (confident match)
name: methionine metabolic process
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
1-235
1g020521m 325 ID: Q9FV50 (confident match)
name: Methionine aminopeptidase 1D, chloroplastic/mitochondrial
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
109-312
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
117-324
 ID: GO:0009737 (confident match)
name: response to abscisic acid stimulus
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
71-324
1g025136m 257 ID: Q9FV50 (portable match)
name: Methionine aminopeptidase 1D, chloroplastic/mitochondrial
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
109-257
 ID: PF00557
score: 99.95 (hhsearch)
coverage over query:
117-256
 ID: GO:0009737 (confident match)
name: response to abscisic acid stimulus
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
71-256
1g021992m 304 ID: Q9FV50 (confident match)
name: Methionine aminopeptidase 1D, chloroplastic/mitochondrial
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
109-304
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
117-304
 ID: GO:0009737 (confident match)
name: response to abscisic acid stimulus
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
71-304
1g021683m 309 ID: Q9FV50 (confident match)
name: Methionine aminopeptidase 1D, chloroplastic/mitochondrial
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
65-308
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
73-300
 ID: GO:0009737 (confident match)
name: response to abscisic acid stimulus
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
27-308
1g020322m 327 ID: Q9FV50 (confident match)
name: Methionine aminopeptidase 1D, chloroplastic/mitochondrial
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
83-326
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
91-318
 ID: GO:0009737 (confident match)
name: response to abscisic acid stimulus
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
45-326
1g026866m 231 ID: Q9FV50 (portable match)
name: Methionine aminopeptidase 1D, chloroplastic/mitochondrial
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:99.96 (hhsearch)
coverage over query:
109-230
 ID: PF00557
score: 99.87 (hhsearch)
coverage over query:
117-230
 ID: GO:0009737 (confident match)
name: response to abscisic acid stimulus
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
71-231
1g027841m 218 ID: Q9FV50 (portable match)
name: Methionine aminopeptidase 1D, chloroplastic/mitochondrial
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:99.96 (hhsearch)
coverage over query:
109-218
 ID: PF00557
score: 99.78 (hhsearch)
coverage over query:
117-218
 ID: GO:0009737 (portable match)
name: response to abscisic acid stimulus
 PDB ID: 3s6b chain A
(very confident match)
coverage over query:
74-206
1g021967m 304 ID: Q9FV50 (confident match)
name: Methionine aminopeptidase 1D, chloroplastic/mitochondrial
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
109-304
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
117-304
 ID: GO:0009737 (confident match)
name: response to abscisic acid stimulus
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
71-304
1g026256m 241 ID: Q9FV50 (portable match)
name: Methionine aminopeptidase 1D, chloroplastic/mitochondrial
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:99.97 (hhsearch)
coverage over query:
108-238
 ID: PF00557
score: 99.85 (hhsearch)
coverage over query:
117-238
 ID: GO:0009737 (portable match)
name: response to abscisic acid stimulus
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
71-238
1g026748m 234 ID: Q9FV50 (portable match)
name: Methionine aminopeptidase 1D, chloroplastic/mitochondrial
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:99.97 (hhsearch)
coverage over query:
109-234
 ID: PF00557
score: 99.88 (hhsearch)
coverage over query:
117-233
 ID: GO:0009737 (confident match)
name: response to abscisic acid stimulus
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
71-234
1g018617m 353 ID: Q9FV50 (confident match)
name: Methionine aminopeptidase 1D, chloroplastic/mitochondrial
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
109-352
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
117-344
 ID: GO:0009737 (confident match)
name: response to abscisic acid stimulus
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
71-352
1g026899m 231 ID: Q9FV50 (portable match)
name: Methionine aminopeptidase 1D, chloroplastic/mitochondrial
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:99.96 (hhsearch)
coverage over query:
109-230
 ID: PF00557
score: 99.87 (hhsearch)
coverage over query:
117-230
 ID: GO:0009737 (confident match)
name: response to abscisic acid stimulus
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
71-231
1g025641m 250 ID: Q9FV50 (portable match)
name: Methionine aminopeptidase 1D, chloroplastic/mitochondrial
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:99.97 (hhsearch)
coverage over query:
109-243
 ID: PF00557
score: 99.90 (hhsearch)
coverage over query:
117-244
 ID: GO:0009737 (confident match)
name: response to abscisic acid stimulus
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
71-244
1g021513m 311 ID: Q4VBS4 (portable match)
name: Methionine aminopeptidase 1D, mitochondrial
def: Removes the N-terminal methionine from nascent proteins.
source: Danio rerio (taxid: 7955)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
67-310
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
75-302
 ID: GO:0031365 (confident match)
name: N-terminal protein amino acid modification
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
29-310
1g021989m 304 ID: Q9FV52 (portable match)
name: Methionine aminopeptidase 1B, chloroplastic
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
122-304
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
130-300
 ID: GO:0031365 (portable match)
name: N-terminal protein amino acid modification
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
84-302
1g017786m 366 ID: Q9FV52 (confident match)
name: Methionine aminopeptidase 1B, chloroplastic
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
122-365
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
130-357
 ID: GO:0031365 (confident match)
name: N-terminal protein amino acid modification
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
84-365
1g018915m 349 ID: Q9SLN5 (portable match)
name: Methionine aminopeptidase 1A
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
141-341
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
149-343
 ID: GO:0031365 (portable match)
name: N-terminal protein amino acid modification
 PDB ID: 2b3h chain A
(very confident match)
coverage over query:
87-343
1g016390m 390 ID: Q9SLN5 (confident match)
name: Methionine aminopeptidase 1A
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
140-388
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
149-377
 ID: GO:0031365 (confident match)
name: N-terminal protein amino acid modification
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
99-385
1g018913m 349 ID: Q9SLN5 (portable match)
name: Methionine aminopeptidase 1A
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
141-341
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
149-343
 ID: GO:0031365 (portable match)
name: N-terminal protein amino acid modification
 PDB ID: 2b3h chain A
(very confident match)
coverage over query:
87-343
1g018911m 349 ID: Q9SLN5 (portable match)
name: Methionine aminopeptidase 1A
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
141-341
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
149-343
 ID: GO:0031365 (portable match)
name: N-terminal protein amino acid modification
 PDB ID: 2b3h chain A
(very confident match)
coverage over query:
87-343
1g017489m 370 ID: Q9SLN5 (confident match)
name: Methionine aminopeptidase 1A
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
111-358
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
120-348
 ID: GO:0031365 (confident match)
name: N-terminal protein amino acid modification
 PDB ID: 2b3h chain A
(very confident match)
coverage over query:
58-362
1g015838m 399 ID: Q9SLN5 (confident match)
name: Methionine aminopeptidase 1A
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
140-388
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
149-377
 ID: GO:0031365 (confident match)
name: N-terminal protein amino acid modification
 PDB ID: 2b3h chain A
(very confident match)
coverage over query:
88-391
1g018846m 349 ID: Q9SLN5 (confident match)
name: Methionine aminopeptidase 1A
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
141-341
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
149-345
 ID: GO:0031365 (confident match)
name: N-terminal protein amino acid modification
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
99-342
1g018857m 349 ID: Q9SLN5 (confident match)
name: Methionine aminopeptidase 1A
def: Removes the N-terminal methionine from nascent proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
141-341
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
149-345
 ID: GO:0031365 (confident match)
name: N-terminal protein amino acid modification
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
99-342
1g002506m 914 ID: Q9LKW9 (portable match)
name: Sodium/hydrogen exchanger 7
def: Acts in electroneutral exchange of protons for cations such as Na(+) or Li(+) across plasma membrane. Involved in Na(+) and K(+) homeostasis. Required for cytoplasmic Na(+) and Li(+) detoxification by secreting them from the cytoplasm to the extracellular space. Regulates Na(+) content of the xylem sap.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:99.93 (hhsearch)
coverage over query:
2-226
 ID: PF00027
score: 99.46 (hhsearch)
coverage over query:
523-613
 ID: GO:0009941 (portable match)
name: chloroplast envelope
 PDB ID: 3d0s chain A
(portable match)
coverage over query:
496-650
1g037375m 183 ID: Q8RWU6 (portable match)
name: Sodium/hydrogen exchanger 6
def: Involved in trafficking to the vacuole. Required for cell proliferation and cell expansion, but not for cell differentiation. May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:99.74 (hhsearch)
coverage over query:
26-182
 ID: PF00999
score: 98.65 (hhsearch)
coverage over query:
39-173
 ID: GO:0005768 (portable match)
name: endosome
 PDB ID: 2l0e chain A
(confident match)
coverage over query:
147-174
1g047772m 498 ID: Q8RWU6 (confident match)
name: Sodium/hydrogen exchanger 6
def: Involved in trafficking to the vacuole. Required for cell proliferation and cell expansion, but not for cell differentiation. May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
26-425
 ID: PF00999
score: 100.00 (hhsearch)
coverage over query:
34-420
 ID: GO:0005768 (portable match)
name: endosome
 PDB ID: 2l0e chain A
(confident match)
coverage over query:
154-184
1g039050m 112 no hit ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:99.60 (hhsearch)
coverage over query:
27-111
 ID: PF00999
score: 97.63 (hhsearch)
coverage over query:
25-110
 ID: GO:0005768 (portable match)
name: endosome
 PDB ID: 2l0e chain A
(confident match)
coverage over query:
78-109
1g036219m 149 no hit ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:98.37 (hhsearch)
coverage over query:
9-147
 ID: PF00999
score: 93.25 (hhsearch)
coverage over query:
20-146
 ID: GO:0005768 (portable match)
name: endosome
 PDB ID: 1y4e chain A
(portable match)
coverage over query:
69-90
1g013653m 439 ID: Q84WG1 (confident match)
name: Sodium/hydrogen exchanger 3
def: May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
27-438
 ID: PF00999
score: 100.00 (hhsearch)
coverage over query:
35-438
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2k3c chain A
(confident match)
coverage over query:
260-290
1g001864m 1002 ID: Q9LKW9 (confident match)
name: Sodium/hydrogen exchanger 7
def: Acts in electroneutral exchange of protons for cations such as Na(+) or Li(+) across plasma membrane. Involved in Na(+) and K(+) homeostasis. Required for cytoplasmic Na(+) and Li(+) detoxification by secreting them from the cytoplasm to the extracellular space. Regulates Na(+) content of the xylem sap.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
34-463
 ID: PF00999
score: 100.00 (hhsearch)
coverage over query:
44-452
 ID: GO:0009941 (portable match)
name: chloroplast envelope
 PDB ID: 3d0s chain A
(portable match)
coverage over query:
734-888
1g001116m 1152 ID: Q9LKW9 (portable match)
name: Sodium/hydrogen exchanger 7
def: Acts in electroneutral exchange of protons for cations such as Na(+) or Li(+) across plasma membrane. Involved in Na(+) and K(+) homeostasis. Required for cytoplasmic Na(+) and Li(+) detoxification by secreting them from the cytoplasm to the extracellular space. Regulates Na(+) content of the xylem sap.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
33-463
 ID: PF00999
score: 99.97 (hhsearch)
coverage over query:
46-452
 ID: GO:0009941 (confident match)
name: chloroplast envelope
 PDB ID: 3fx3 chain A
(very confident match)
coverage over query:
733-886
1g001423m 1079 ID: Q9LKW9 (portable match)
name: Sodium/hydrogen exchanger 7
def: Acts in electroneutral exchange of protons for cations such as Na(+) or Li(+) across plasma membrane. Involved in Na(+) and K(+) homeostasis. Required for cytoplasmic Na(+) and Li(+) detoxification by secreting them from the cytoplasm to the extracellular space. Regulates Na(+) content of the xylem sap.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
33-463
 ID: PF00999
score: 99.98 (hhsearch)
coverage over query:
44-452
 ID: GO:0009941 (portable match)
name: chloroplast envelope
 PDB ID: 1vt4 chain I
(portable match)
coverage over query:
304-414,426-486,499-594
,608-649,662-810
,831-895
1g002099m 967 ID: Q9LKW9 (portable match)
name: Sodium/hydrogen exchanger 7
def: Acts in electroneutral exchange of protons for cations such as Na(+) or Li(+) across plasma membrane. Involved in Na(+) and K(+) homeostasis. Required for cytoplasmic Na(+) and Li(+) detoxification by secreting them from the cytoplasm to the extracellular space. Regulates Na(+) content of the xylem sap.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
34-463
 ID: PF00999
score: 100.00 (hhsearch)
coverage over query:
44-452
 ID: GO:0009941 (portable match)
name: chloroplast envelope
 PDB ID: 3e97 chain A
(confident match)
coverage over query:
733-898,912-958
1g009116m 543 ID: Q56XP4 (confident match)
name: Sodium/hydrogen exchanger 2
def: Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity. Involved in vacuolar ion compartmentalization necessary for cell volume regulation and cytoplasmic Na(+) detoxification.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
26-449
 ID: PF00999
score: 100.00 (hhsearch)
coverage over query:
35-444
 ID: GO:0015386 (confident match)
name: potassium:hydrogen antiporter activity
 PDB ID: 2k3c chain A
(confident match)
coverage over query:
260-290
1g009645m 530 ID: Q56XP4 (portable match)
name: Sodium/hydrogen exchanger 2
def: Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity. Involved in vacuolar ion compartmentalization necessary for cell volume regulation and cytoplasmic Na(+) detoxification.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
23-445
 ID: PF00999
score: 100.00 (hhsearch)
coverage over query:
32-440
 ID: GO:0015386 (confident match)
name: potassium:hydrogen antiporter activity
 PDB ID: 2k3c chain A
(confident match)
coverage over query:
256-286
1g023195m 286 ID: Q56XP4 (portable match)
name: Sodium/hydrogen exchanger 2
def: Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity. Involved in vacuolar ion compartmentalization necessary for cell volume regulation and cytoplasmic Na(+) detoxification.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:99.94 (hhsearch)
coverage over query:
2-194
 ID: PF00999
score: 99.29 (hhsearch)
coverage over query:
2-188
 ID: GO:0015386 (portable match)
name: potassium:hydrogen antiporter activity
 PDB ID: 2k3c chain A
(confident match)
coverage over query:
3-34
1g043481m 351 ID: Q56XP4 (portable match)
name: Sodium/hydrogen exchanger 2
def: Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity. Involved in vacuolar ion compartmentalization necessary for cell volume regulation and cytoplasmic Na(+) detoxification.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
31-348
 ID: PF00999
score: 99.95 (hhsearch)
coverage over query:
38-328
 ID: GO:0015386 (portable match)
name: potassium:hydrogen antiporter activity
 PDB ID: 1zcd chain A
(confident match)
coverage over query:
85-218,232-329
1g023173m 286 ID: Q56XP4 (portable match)
name: Sodium/hydrogen exchanger 2
def: Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity. Involved in vacuolar ion compartmentalization necessary for cell volume regulation and cytoplasmic Na(+) detoxification.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:99.94 (hhsearch)
coverage over query:
2-194
 ID: PF00999
score: 99.29 (hhsearch)
coverage over query:
2-188
 ID: GO:0015386 (portable match)
name: potassium:hydrogen antiporter activity
 PDB ID: 2k3c chain A
(confident match)
coverage over query:
3-34
1g018758m 351 ID: Q84WG1 (portable match)
name: Sodium/hydrogen exchanger 3
def: May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
25-329
 ID: PF00999
score: 99.95 (hhsearch)
coverage over query:
36-326
 ID: GO:0015386 (confident match)
name: potassium:hydrogen antiporter activity
 PDB ID: 2k3c chain A
(confident match)
coverage over query:
260-290
1g018715m 351 ID: Q84WG1 (portable match)
name: Sodium/hydrogen exchanger 3
def: May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
25-329
 ID: PF00999
score: 99.95 (hhsearch)
coverage over query:
36-326
 ID: GO:0015386 (confident match)
name: potassium:hydrogen antiporter activity
 PDB ID: 2k3c chain A
(confident match)
coverage over query:
260-290
1g010004m 520 ID: Q8S397 (confident match)
name: Sodium/hydrogen exchanger 4
def: May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
21-443
 ID: PF00999
score: 100.00 (hhsearch)
coverage over query:
30-438
 no hit PDB ID: 1zcd chain A
(confident match)
coverage over query:
78-210,224-399
1g042131m 201 no hit ID: COG0026
name: PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
score:99.96 (hhsearch)
coverage over query:
17-197
 ID: PF13535
score: 99.76 (hhsearch)
coverage over query:
110-201
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 3k5i chain A
(very confident match)
coverage over query:
75-198
1g041113m 983 no hit ID: COG0028
name: IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
1-453
 ID: PF02775
score: 99.94 (hhsearch)
coverage over query:
286-448
 no hit PDB ID: 3lq1 chain A
(very confident match)
coverage over query:
3-300,314-462
1g014091m 431 ID: P51845 (portable match)
name: Pyruvate decarboxylase isozyme 1 (Fragment)
def:
source: Nicotiana tabacum (taxid: 4097)
 ID: COG0028
name: IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
26-423
 ID: PF02776
score: 100.00 (hhsearch)
coverage over query:
27-197
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2vbi chain A
(very confident match)
coverage over query:
26-428
1g007800m 589 ID: Q10MW3 (confident match)
name: Pyruvate decarboxylase isozyme 2
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0028
name: IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
26-565
 ID: PF02776
score: 100.00 (hhsearch)
coverage over query:
27-197
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2vbi chain A
(very confident match)
coverage over query:
27-585
1g044559m 585 ID: Q10MW3 (confident match)
name: Pyruvate decarboxylase isozyme 2
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0028
name: IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
43-561
 ID: PF02776
score: 100.00 (hhsearch)
coverage over query:
44-214
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2vbi chain A
(very confident match)
coverage over query:
44-581
1g009060m 545 ID: Q10MW3 (confident match)
name: Pyruvate decarboxylase isozyme 2
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0028
name: IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
26-540
 ID: PF02776
score: 100.00 (hhsearch)
coverage over query:
27-197
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2vbi chain A
(very confident match)
coverage over query:
25-540
1g007917m 585 ID: Q10MW3 (confident match)
name: Pyruvate decarboxylase isozyme 2
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0028
name: IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
26-562
 ID: PF02776
score: 100.00 (hhsearch)
coverage over query:
27-197
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2vbi chain A
(very confident match)
coverage over query:
26-581
1g013746m 437 ID: Q9LF46 (portable match)
name: 2-hydroxyacyl-CoA lyase
def: Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0028
name: IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
13-437
 ID: PF02776
score: 100.00 (hhsearch)
coverage over query:
14-182
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2c31 chain A
(very confident match)
coverage over query:
12-437
1g011590m 482 ID: Q9LF46 (confident match)
name: 2-hydroxyacyl-CoA lyase
def: Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0028
name: IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
13-482
 ID: PF02776
score: 100.00 (hhsearch)
coverage over query:
14-182
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2c31 chain A
(very confident match)
coverage over query:
12-482
1g048725m 661 ID: Q6K2E8 (confident match)
name: Acetolactate synthase 1, chloroplastic
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0028
name: IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
87-648
 ID: PF02776
score: 100.00 (hhsearch)
coverage over query:
88-254
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1ybh chain A
(very confident match)
coverage over query:
77-660
1g040733m 643 ID: Q6K2E8 (portable match)
name: Acetolactate synthase 1, chloroplastic
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0028
name: IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
69-631
 ID: PF02776
score: 100.00 (hhsearch)
coverage over query:
70-236
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1ybh chain A
(very confident match)
coverage over query:
59-643
1g038651m 324 no hit ID: COG0028
name: IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
7-300
 ID: PF02776
score: 99.81 (hhsearch)
coverage over query:
7-83
 no hit PDB ID: 1ovm chain A
(very confident match)
coverage over query:
7-318
1g046556m 633 ID: Q9U3X4 (confident match)
name: Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
def: Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
source: Dictyostelium discoideum (taxid: 44689)
 ID: COG0029
name: NadB Aspartate oxidase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
49-604
 ID: PF00890
score: 100.00 (hhsearch)
coverage over query:
49-446
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 1kf6 chain A
(very confident match)
coverage over query:
45-408,419-633
1g006387m 647 ID: Q51363 (portable match)
name: L-aspartate oxidase
def: Catalyzes the oxidation of L-aspartate to iminoaspartate.
source: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)
 ID: COG0029
name: NadB Aspartate oxidase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
90-630
 ID: PF00890
score: 100.00 (hhsearch)
coverage over query:
90-474
 ID: GO:0009507 (confident match)
name: chloroplast
 PDB ID: 1chu chain A
(very confident match)
coverage over query:
86-628
1g006532m 641 ID: Q51363 (portable match)
name: L-aspartate oxidase
def: Catalyzes the oxidation of L-aspartate to iminoaspartate.
source: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)
 ID: COG0029
name: NadB Aspartate oxidase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
84-625
 ID: PF00890
score: 100.00 (hhsearch)
coverage over query:
84-468
 ID: GO:0009507 (confident match)
name: chloroplast
 PDB ID: 1chu chain A
(very confident match)
coverage over query:
79-624
1g006385m 647 ID: Q51363 (portable match)
name: L-aspartate oxidase
def: Catalyzes the oxidation of L-aspartate to iminoaspartate.
source: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)
 ID: COG0029
name: NadB Aspartate oxidase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
90-631
 ID: PF00890
score: 100.00 (hhsearch)
coverage over query:
90-474
 ID: GO:0009507 (confident match)
name: chloroplast
 PDB ID: 1chu chain A
(very confident match)
coverage over query:
86-628
1g006397m 647 ID: Q51363 (portable match)
name: L-aspartate oxidase
def: Catalyzes the oxidation of L-aspartate to iminoaspartate.
source: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)
 ID: COG0029
name: NadB Aspartate oxidase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
90-631
 ID: PF00890
score: 100.00 (hhsearch)
coverage over query:
90-474
 ID: GO:0009507 (confident match)
name: chloroplast
 PDB ID: 1chu chain A
(very confident match)
coverage over query:
86-628
1g018261m 359 ID: Q2KHT8 (portable match)
name: Probable dimethyladenosine transferase
def: Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 18S rRNA in the 40S particle.
source: Bos taurus (taxid: 9913)
 ID: COG0030
name: KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
28-355
 ID: PF00398
score: 100.00 (hhsearch)
coverage over query:
28-353
 ID: GO:0005730 (confident match)
name: nucleolus
 PDB ID: 1zq9 chain A
(very confident match)
coverage over query:
31-267,314-359
1g047897m 232 ID: B4S787 (portable match)
name: Ribosomal RNA small subunit methyltransferase A
def: Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
source: Prosthecochloris aestuarii (strain DSM 271 / SK 413) (taxid: 290512)
 ID: COG0030
name: KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-227
 ID: PF00398
score: 100.00 (hhsearch)
coverage over query:
2-218
 ID: GO:0005739 (portable match)
name: mitochondrion
 PDB ID: 1zq9 chain A
(very confident match)
coverage over query:
4-218
1g017450m 371 no hit ID: COG0030
name: KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
114-361
 ID: PF00398
score: 100.00 (hhsearch)
coverage over query:
113-364
 ID: GO:0009409 (portable match)
name: response to cold
 PDB ID: 1yub chain A
(very confident match)
coverage over query:
114-202,214-361
1g016715m 384 no hit ID: COG0030
name: KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
114-383
 ID: PF00398
score: 100.00 (hhsearch)
coverage over query:
114-383
 ID: GO:0009409 (portable match)
name: response to cold
 PDB ID: 1yub chain A
(very confident match)
coverage over query:
114-203,215-343,354-382
1g023482m 281 no hit ID: COG0030
name: KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
score:99.96 (hhsearch)
coverage over query:
114-281
 ID: PF00398
score: 99.90 (hhsearch)
coverage over query:
114-281
 ID: GO:0009409 (portable match)
name: response to cold
 PDB ID: 1yub chain A
(very confident match)
coverage over query:
114-203,215-280
1g023240m 285 no hit ID: COG0030
name: KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
score:99.95 (hhsearch)
coverage over query:
114-284
 ID: PF00398
score: 99.87 (hhsearch)
coverage over query:
113-284
 ID: GO:0009409 (portable match)
name: response to cold
 PDB ID: 1yub chain A
(very confident match)
coverage over query:
114-202,214-283
1g015990m 397 no hit ID: COG0030
name: KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
113-389
 ID: PF00398
score: 100.00 (hhsearch)
coverage over query:
113-388
 ID: GO:0009409 (portable match)
name: response to cold
 PDB ID: 1yub chain A
(very confident match)
coverage over query:
114-202,214-343,354-388
1g038938m 194 no hit ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-194
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
2-194
 ID: GO:0005576 (portable match)
name: extracellular region
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
2-194
1g020528m 325 ID: P47998 (confident match)
name: Cysteine synthase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
10-307
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
12-300
 ID: GO:0005794 (confident match)
name: Golgi apparatus
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
8-323
1g033926m 108 ID: Q9XEA6 (portable match)
name: Cysteine synthase
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:99.97 (hhsearch)
coverage over query:
8-105
 ID: PF00291
score: 99.89 (hhsearch)
coverage over query:
11-106
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
6-105
1g033940m 108 ID: Q9XEA6 (portable match)
name: Cysteine synthase
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:99.97 (hhsearch)
coverage over query:
8-105
 ID: PF00291
score: 99.89 (hhsearch)
coverage over query:
11-106
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
6-105
1g022547m 295 ID: O22682 (portable match)
name: Probable cysteine synthase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
96-295
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
98-295
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
94-295
1g019047m 347 ID: O22682 (portable match)
name: Probable cysteine synthase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
97-347
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
98-347
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
95-347
1g015783m 400 ID: O22682 (portable match)
name: Probable cysteine synthase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
97-383
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
98-376
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
96-397
1g015778m 400 ID: O22682 (portable match)
name: Probable cysteine synthase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
97-383
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
98-376
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
96-397
1g023801m 277 ID: P47998 (confident match)
name: Cysteine synthase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-259
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
1-251
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
1-275
1g023227m 285 ID: P47998 (confident match)
name: Cysteine synthase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-267
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
2-259
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
1-283
1g027338m 224 ID: P47998 (portable match)
name: Cysteine synthase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
9-224
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
12-217
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
7-223
1g024208m 271 ID: P47998 (confident match)
name: Cysteine synthase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
9-271
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
12-271
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
8-271
1g027405m 224 ID: P47998 (portable match)
name: Cysteine synthase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
10-224
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
12-217
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
7-223
1g028618m 206 ID: P47998 (portable match)
name: Cysteine synthase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
9-206
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
12-206
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
7-206
1g024252m 270 ID: P47998 (confident match)
name: Cysteine synthase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-252
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
2-245
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
1-266
1g020805m 321 ID: P47998 (confident match)
name: Cysteine synthase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
9-301
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
12-300
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
7-302
1g023695m 278 ID: P47998 (confident match)
name: Cysteine synthase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-260
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
1-252
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
1-277
1g020501m 325 ID: P47998 (confident match)
name: Cysteine synthase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
10-307
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
12-300
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
8-324
1g024022m 274 ID: Q00834 (portable match)
name: Cysteine synthase
def:
source: Spinacia oleracea (taxid: 3562)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
9-272
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
11-273
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
6-272
1g023814m 276 ID: Q00834 (portable match)
name: Cysteine synthase
def:
source: Spinacia oleracea (taxid: 3562)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
9-276
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
11-276
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
6-275
1g024040m 273 ID: Q00834 (portable match)
name: Cysteine synthase
def:
source: Spinacia oleracea (taxid: 3562)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
9-273
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
11-272
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
6-272
1g025563m 251 ID: Q43317 (portable match)
name: Cysteine synthase
def: Produces L-cysteine from O-acetyl-L-serine and hydrogen sulfide. Can also use pyrazole and 3,4-dihydroxypyridine instead of the hydrogen sulfide to produce two plant specific non-protein amino acids beta-pyrazolylalanine and L-mimosine.
source: Citrullus lanatus (taxid: 3654)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
18-246
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
20-241
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
16-244
1g043209m 221 ID: Q7DDL5 (portable match)
name: Cysteine synthase
def:
source: Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
9-219
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
12-217
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
8-219
1g025113m 257 ID: Q7DDL5 (portable match)
name: Cysteine synthase
def:
source: Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
9-256
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
11-257
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
6-257
1g028372m 210 ID: Q7DDL5 (portable match)
name: Cysteine synthase
def:
source: Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
8-208
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
11-209
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
7-209
1g033857m 110 ID: Q9XEA6 (portable match)
name: Cysteine synthase
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:99.95 (hhsearch)
coverage over query:
8-104
 ID: PF00291
score: 99.82 (hhsearch)
coverage over query:
11-103
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
6-104
1g033876m 110 ID: Q9XEA6 (portable match)
name: Cysteine synthase
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:99.95 (hhsearch)
coverage over query:
8-104
 ID: PF00291
score: 99.82 (hhsearch)
coverage over query:
11-103
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
6-104
1g037531m 106 no hit ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:99.94 (hhsearch)
coverage over query:
1-85
 ID: PF00291
score: 99.16 (hhsearch)
coverage over query:
3-78
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
2-100
1g038224m 282 no hit ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
42-256
 ID: PF00291
score: 99.95 (hhsearch)
coverage over query:
42-249
 ID: GO:0044446 (portable match)
name: intracellular organelle part
 PDB ID: 2pqm chain A
(very confident match)
coverage over query:
41-153,171-269
1g023565m 280 ID: P0A535 (portable match)
name: O-acetylserine sulfhydrylase
def: Catalyzes the conversion of O-acetylserine (OAS) to cysteine through the elimination of acetate and addition of hydrogen sulfide.
source: Mycobacterium bovis (taxid: 1765)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
8-267
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
11-275
 ID: GO:0050017 (confident match)
name: L-3-cyanoalanine synthase activity
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
6-275
1g020654m 323 ID: Q00834 (portable match)
name: Cysteine synthase
def:
source: Spinacia oleracea (taxid: 3562)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
9-306
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
11-299
 ID: GO:0050017 (confident match)
name: L-3-cyanoalanine synthase activity
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
7-321
1g020606m 323 ID: Q00834 (portable match)
name: Cysteine synthase
def:
source: Spinacia oleracea (taxid: 3562)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
9-306
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
11-299
 ID: GO:0050017 (confident match)
name: L-3-cyanoalanine synthase activity
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
7-321
1g020631m 323 ID: Q00834 (portable match)
name: Cysteine synthase
def:
source: Spinacia oleracea (taxid: 3562)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
9-306
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
11-299
 ID: GO:0050017 (confident match)
name: L-3-cyanoalanine synthase activity
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
7-321
1g020617m 323 ID: Q00834 (portable match)
name: Cysteine synthase
def:
source: Spinacia oleracea (taxid: 3562)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
9-306
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
11-299
 ID: GO:0050017 (confident match)
name: L-3-cyanoalanine synthase activity
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
7-321
1g027019m 229 ID: Q7DDL5 (portable match)
name: Cysteine synthase
def:
source: Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
9-229
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
11-216
 ID: GO:0050017 (confident match)
name: L-3-cyanoalanine synthase activity
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
6-229
1g027284m 225 ID: Q7DDL5 (portable match)
name: Cysteine synthase
def:
source: Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-208
 ID: PF00291
score: 99.97 (hhsearch)
coverage over query:
1-200
 ID: GO:0050017 (confident match)
name: L-3-cyanoalanine synthase activity
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
1-224
1g027277m 225 ID: Q7DDL5 (portable match)
name: Cysteine synthase
def:
source: Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-208
 ID: PF00291
score: 99.97 (hhsearch)
coverage over query:
1-200
 ID: GO:0050017 (confident match)
name: L-3-cyanoalanine synthase activity
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
1-224
1g027297m 225 ID: Q7DDL5 (portable match)
name: Cysteine synthase
def:
source: Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-208
 ID: PF00291
score: 99.97 (hhsearch)
coverage over query:
1-200
 ID: GO:0050017 (confident match)
name: L-3-cyanoalanine synthase activity
 PDB ID: 1z7w chain A
(very confident match)
coverage over query:
1-224
1g021775m 307 ID: Q9S757 (portable match)
name: Bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial
def: The cyanoalanine synthesis reaction is more efficient than the cysteine synthase activity. Probably involved in the detoxification of cyanide that arises from ethylene biosynthesis. Maintains a low level of cyanide for proper root hair development.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
57-305
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
58-306
 ID: GO:0050017 (confident match)
name: L-3-cyanoalanine synthase activity
 PDB ID: 3vc3 chain A
(very confident match)
coverage over query:
55-305
1g036442m 78 no hit ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:99.81 (hhsearch)
coverage over query:
17-78
 ID: PF00291
score: 99.47 (hhsearch)
coverage over query:
20-73
 no hit PDB ID: 1z7w chain A
(very confident match)
coverage over query:
16-77
1g043034m 197 no hit ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-176
 ID: PF00291
score: 99.39 (hhsearch)
coverage over query:
77-130
 no hit PDB ID: 1z7w chain A
(very confident match)
coverage over query:
1-130,165-189
1g027647m 220 ID: Q9ZSQ4 (portable match)
name: Phosphoglucomutase, cytoplasmic
def: This enzyme participates in both the breakdown and synthesis of glucose.
source: Populus tremula (taxid: 113636)
 ID: COG0033
name: Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
score:99.94 (hhsearch)
coverage over query:
1-205
 ID: PF02880
score: 99.76 (hhsearch)
coverage over query:
1-78
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1kfi chain A
(very confident match)
coverage over query:
1-201
1g043065m 89 no hit ID: COG0034
name: PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
score:99.86 (hhsearch)
coverage over query:
13-88
 ID: PF13537
score: 99.82 (hhsearch)
coverage over query:
13-88
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1ao0 chain A
(very confident match)
coverage over query:
13-88
1g045545m 158 ID: Q9STG9 (portable match)
name: Amidophosphoribosyltransferase 2, chloroplastic
def: Catalyzes the first committed step of 'de novo purine biosynthesis from glutamine. Required for chloroplast biogenesis and cell division. Confers sensitivity to the phenyltriazole acetic acid compound [5-(4-chlorophenyl)-1-isopropyl-1H-[1,2,4]triazol-3-yl]-acetic acid (DAS734), a bleaching herbicide.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0034
name: PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-145
 ID: PF14572
score: 99.73 (hhsearch)
coverage over query:
29-113
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1ecf chain A
(very confident match)
coverage over query:
5-143
1g035086m 73 ID: O65583 (portable match)
name: Uridine kinase-like protein 4
def: Involved in the pyrimidine salvage pathway. The uracil phosphoribosyltransferase (UPRT) activity, that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate, is unsure.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0035
name: Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
score:99.91 (hhsearch)
coverage over query:
8-62
 ID: PF14681
score: 99.90 (hhsearch)
coverage over query:
6-61
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1bd3 chain D
(very confident match)
coverage over query:
6-62
1g022342m 298 ID: Q9FKS0 (confident match)
name: Uridine kinase-like protein 1, chloroplastic
def: Involved in the pyrimidine salvage pathway. The uracil phosphoribosyltransferase (UPRT) activity, that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate, is unsure.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0035
name: Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
91-297
 ID: PF14681
score: 100.00 (hhsearch)
coverage over query:
95-296
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1bd3 chain D
(very confident match)
coverage over query:
84-297
1g022183m 301 ID: Q9FKS0 (confident match)
name: Uridine kinase-like protein 1, chloroplastic
def: Involved in the pyrimidine salvage pathway. The uracil phosphoribosyltransferase (UPRT) activity, that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate, is unsure.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0035
name: Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
91-300
 ID: PF14681
score: 100.00 (hhsearch)
coverage over query:
95-299
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1bd3 chain D
(very confident match)
coverage over query:
84-300
1g023344m 283 ID: Q9FKS0 (portable match)
name: Uridine kinase-like protein 1, chloroplastic
def: Involved in the pyrimidine salvage pathway. The uracil phosphoribosyltransferase (UPRT) activity, that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate, is unsure.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0035
name: Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
73-282
 ID: PF14681
score: 100.00 (hhsearch)
coverage over query:
77-281
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1bd3 chain D
(very confident match)
coverage over query:
66-282
1g035513m 473 ID: Q9LTY6 (confident match)
name: Uridine kinase-like protein 5
def: Involved in the pyrimidine salvage pathway.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0035
name: Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
242-451
 ID: PF14681
score: 100.00 (hhsearch)
coverage over query:
249-450
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1bd3 chain D
(very confident match)
coverage over query:
235-451
1g020306m 328 ID: Q9M336 (portable match)
name: Uracil phosphoribosyltransferase, chloroplastic
def: Uracil phosphoribosyltransferase (UPRT) that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate. Is probably the only functional UPRT, since the dual-domain proteins of the UKL family seem to lack this activity.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0035
name: Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
117-328
 ID: PF14681
score: 100.00 (hhsearch)
coverage over query:
121-328
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1i5e chain A
(very confident match)
coverage over query:
117-328
1g022490m 296 ID: Q9M336 (portable match)
name: Uracil phosphoribosyltransferase, chloroplastic
def: Uracil phosphoribosyltransferase (UPRT) that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate. Is probably the only functional UPRT, since the dual-domain proteins of the UKL family seem to lack this activity.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0035
name: Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
117-296
 ID: PF14681
score: 100.00 (hhsearch)
coverage over query:
121-296
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1i5e chain A
(very confident match)
coverage over query:
117-296
1g025961m 245 ID: Q9M336 (portable match)
name: Uracil phosphoribosyltransferase, chloroplastic
def: Uracil phosphoribosyltransferase (UPRT) that catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate. Is probably the only functional UPRT, since the dual-domain proteins of the UKL family seem to lack this activity.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0035
name: Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
score:99.98 (hhsearch)
coverage over query:
117-229
 ID: PF14681
score: 99.96 (hhsearch)
coverage over query:
121-226
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1v9s chain A
(very confident match)
coverage over query:
117-227
1g033625m 115 ID: Q9SE42 (portable match)
name: Ribulose-phosphate 3-epimerase, cytoplasmic isoform
def: Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0036
name: Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-110
 ID: PF00834
score: 99.97 (hhsearch)
coverage over query:
1-95
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1h1y chain A
(very confident match)
coverage over query:
1-115
1g031549m 157 ID: Q9SE42 (portable match)
name: Ribulose-phosphate 3-epimerase, cytoplasmic isoform
def: Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0036
name: Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-151
 ID: PF00834
score: 100.00 (hhsearch)
coverage over query:
1-137
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1h1y chain A
(very confident match)
coverage over query:
1-157
1g031554m 157 ID: Q9SE42 (portable match)
name: Ribulose-phosphate 3-epimerase, cytoplasmic isoform
def: Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0036
name: Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-151
 ID: PF00834
score: 100.00 (hhsearch)
coverage over query:
1-137
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1h1y chain A
(very confident match)
coverage over query:
1-157
1g033598m 115 ID: Q9SE42 (portable match)
name: Ribulose-phosphate 3-epimerase, cytoplasmic isoform
def: Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0036
name: Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-110
 ID: PF00834
score: 99.97 (hhsearch)
coverage over query:
1-95
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1h1y chain A
(very confident match)
coverage over query:
1-115
1g025927m 246 ID: Q43843 (portable match)
name: Ribulose-phosphate 3-epimerase, chloroplastic (Fragment)
def: Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.
source: Solanum tuberosum (taxid: 4113)
 ID: COG0036
name: Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
56-245
 ID: PF00834
score: 100.00 (hhsearch)
coverage over query:
59-245
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rpx chain A
(very confident match)
coverage over query:
48-243
1g029661m 190 ID: Q9ZTP5 (confident match)
name: Ribulose-phosphate 3-epimerase, chloroplastic
def: Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0036
name: Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-184
 ID: PF00834
score: 100.00 (hhsearch)
coverage over query:
1-170
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rpx chain A
(very confident match)
coverage over query:
1-186
1g023503m 281 ID: Q9ZTP5 (confident match)
name: Ribulose-phosphate 3-epimerase, chloroplastic
def: Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0036
name: Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
56-275
 ID: PF00834
score: 100.00 (hhsearch)
coverage over query:
59-261
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rpx chain A
(very confident match)
coverage over query:
50-276
1g023494m 281 ID: Q9ZTP5 (confident match)
name: Ribulose-phosphate 3-epimerase, chloroplastic
def: Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0036
name: Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
56-275
 ID: PF00834
score: 100.00 (hhsearch)
coverage over query:
59-261
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rpx chain A
(very confident match)
coverage over query:
50-276
1g041164m 357 ID: Q6Z6G6 (confident match)
name: Cytoplasmic tRNA 2-thiolation protein 1
def: Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0037
name: MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
score:100.00 (hhsearch)
coverage over query:
39-319
 ID: PF01171
score: 100.00 (hhsearch)
coverage over query:
63-257
 ID: GO:0002144 (confident match)
name: cytosolic tRNA wobble base thiouridylase complex
 PDB ID: 1wy5 chain A
(very confident match)
coverage over query:
39-283
1g012855m 455 ID: Q2QMW0 (portable match)
name: Cytoplasmic tRNA 2-thiolation protein 2
def: Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0037
name: MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
score:100.00 (hhsearch)
coverage over query:
60-327
 ID: PF01171
score: 100.00 (hhsearch)
coverage over query:
84-291
 ID: GO:0005737 (portable match)
name: cytoplasm
 PDB ID: 1wy5 chain A
(very confident match)
coverage over query:
60-107,121-172,186-327
1g006087m 662 no hit ID: COG0037
name: MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
score:100.00 (hhsearch)
coverage over query:
64-307
 ID: PF01171
score: 100.00 (hhsearch)
coverage over query:
84-277
 ID: GO:0009793 (portable match)
name: embryo development ending in seed dormancy
 PDB ID: 3a2k chain A
(very confident match)
coverage over query:
69-384
1g005288m 704 no hit ID: COG0037
name: MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
score:100.00 (hhsearch)
coverage over query:
64-320
 ID: PF01171
score: 100.00 (hhsearch)
coverage over query:
84-291
 ID: GO:0009793 (portable match)
name: embryo development ending in seed dormancy
 PDB ID: 1ni5 chain A
(very confident match)
coverage over query:
79-229,244-416
1g005804m 676 no hit ID: COG0037
name: MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
score:100.00 (hhsearch)
coverage over query:
64-317
 ID: PF01171
score: 100.00 (hhsearch)
coverage over query:
84-291
 ID: GO:0009793 (portable match)
name: embryo development ending in seed dormancy
 PDB ID: 1ni5 chain A
(very confident match)
coverage over query:
79-230,245-402
1g004220m 767 ID: Q8GX93 (portable match)
name: Chloride channel protein CLC-e
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
143-563
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
150-550
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
86-185,213-484,495-563
1g004176m 770 ID: Q8GX93 (portable match)
name: Chloride channel protein CLC-e
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
91-563
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
150-550
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
87-185,213-484,495-564
1g004181m 770 ID: Q8GX93 (portable match)
name: Chloride channel protein CLC-e
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
91-563
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
150-550
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
87-185,213-484,495-564
1g004167m 770 ID: Q8GX93 (portable match)
name: Chloride channel protein CLC-e
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
91-563
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
150-550
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
87-185,213-484,495-564
1g004241m 766 ID: Q8GX93 (portable match)
name: Chloride channel protein CLC-e
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
91-563
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
150-550
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
78-184,212-484,495-564
1g005685m 683 ID: Q8RXR2 (confident match)
name: Chloride channel protein CLC-f
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
142-529
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
159-508
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
86-525
1g010949m 497 ID: Q8RXR2 (portable match)
name: Chloride channel protein CLC-f
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
142-497
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
159-497
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
85-497
1g004505m 748 ID: Q8RXR2 (confident match)
name: Chloride channel protein CLC-f
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
90-529
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
158-509
 ID: GO:0005794 (confident match)
name: Golgi apparatus
 PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
77-506
1g007694m 593 no hit ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-373
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
2-353
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
2-368
1g007689m 593 no hit ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-373
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
2-353
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
2-368
1g004131m 772 ID: P92943 (confident match)
name: Chloride channel protein CLC-d
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
76-573
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
130-554
 ID: GO:0005802 (confident match)
name: trans-Golgi network
 PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
45-207,219-286,298-380
,401-402,414-418
,431-567
1g004538m 746 ID: P92943 (confident match)
name: Chloride channel protein CLC-d
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
75-572
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
130-555
 ID: GO:0005802 (confident match)
name: trans-Golgi network
 PDB ID: 3org chain A
(very confident match)
coverage over query:
72-385,416-431,444-726
1g003889m 788 ID: P92943 (confident match)
name: Chloride channel protein CLC-d
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
75-572
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
130-554
 ID: GO:0005802 (confident match)
name: trans-Golgi network
 PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
45-207,219-286,298-380
,401-402,414-418
,431-567
1g003732m 799 ID: P92943 (confident match)
name: Chloride channel protein CLC-d
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
76-573
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
130-554
 ID: GO:0005802 (confident match)
name: trans-Golgi network
 PDB ID: 3org chain A
(very confident match)
coverage over query:
72-385,416-431,444-752
1g007387m 605 ID: P92942 (portable match)
name: Chloride channel protein CLC-b
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-401
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
2-381
 ID: GO:0009671 (confident match)
name: nitrate:hydrogen symporter activity
 PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
2-43,55-121,133-215
,232-234,247-249
,262-394
1g013262m 447 ID: P92942 (portable match)
name: Chloride channel protein CLC-b
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:99.90 (hhsearch)
coverage over query:
99-243
 ID: PF00654
score: 99.91 (hhsearch)
coverage over query:
23-224
 ID: GO:0009671 (portable match)
name: nitrate:hydrogen symporter activity
 PDB ID: 3org chain A
(very confident match)
coverage over query:
101-295,307-432
1g003966m 783 ID: P92942 (confident match)
name: Chloride channel protein CLC-b
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
89-579
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
144-560
 ID: GO:0009671 (confident match)
name: nitrate:hydrogen symporter activity
 PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
59-221,233-299,311-393
,410-411,436-572
1g004817m 729 ID: P92942 (confident match)
name: Chloride channel protein CLC-b
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
34-524
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
90-506
 ID: GO:0009671 (confident match)
name: nitrate:hydrogen symporter activity
 PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
34-244,256-339,356-358
,371-374,387-519
1g007394m 605 ID: P92942 (portable match)
name: Chloride channel protein CLC-b
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-401
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
2-381
 ID: GO:0009671 (confident match)
name: nitrate:hydrogen symporter activity
 PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
2-43,55-121,133-215
,232-234,247-249
,262-394
1g003801m 794 ID: P60300 (confident match)
name: Putative chloride channel-like protein CLC-g
def: Putative voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
96-587
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
152-567
 ID: GO:0009705 (confident match)
name: plant-type vacuole membrane
 PDB ID: 3org chain A
(very confident match)
coverage over query:
91-401,418-420,443-769
1g003885m 789 ID: Q96282 (confident match)
name: Chloride channel protein CLC-c
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
104-596
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
160-577
 ID: GO:0009705 (confident match)
name: plant-type vacuole membrane
 PDB ID: 3org chain A
(very confident match)
coverage over query:
103-409,427-428,442-779
1g006517m 642 ID: Q96282 (confident match)
name: Chloride channel protein CLC-c
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
4-448
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
12-430
 ID: GO:0009705 (portable match)
name: plant-type vacuole membrane
 PDB ID: 3org chain A
(very confident match)
coverage over query:
1-168,180-262,289-309
,322-629
1g005409m 698 ID: Q8GX93 (portable match)
name: Chloride channel protein CLC-e
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
90-564
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
150-550
 no hit PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
78-185,213-484,495-565
1g005399m 698 ID: Q8GX93 (portable match)
name: Chloride channel protein CLC-e
def: Voltage-gated chloride channel.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
90-564
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
150-550
 no hit PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
78-185,213-484,495-565
1g017551m 369 ID: O82399 (confident match)
name: Probable malate dehydrogenase, glyoxysomal
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
21-324
 ID: PF00056
score: 100.00 (hhsearch)
coverage over query:
21-164
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
17-344
1g025206m 256 ID: Q5NVR2 (portable match)
name: Malate dehydrogenase, mitochondrial
def:
source: Pongo abelii (taxid: 9601)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
29-256
 ID: PF00056
score: 100.00 (hhsearch)
coverage over query:
29-172
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
26-256
1g018314m 358 ID: Q9LKA3 (confident match)
name: Malate dehydrogenase 2, mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
29-330
 ID: PF00056
score: 100.00 (hhsearch)
coverage over query:
29-172
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
24-340
1g022263m 300 ID: Q9LKA3 (confident match)
name: Malate dehydrogenase 2, mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
29-300
 ID: PF00056
score: 100.00 (hhsearch)
coverage over query:
29-172
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
27-300
1g019519m 340 ID: Q9LKA3 (confident match)
name: Malate dehydrogenase 2, mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
29-339
 ID: PF00056
score: 100.00 (hhsearch)
coverage over query:
29-172
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
26-339
1g022227m 300 ID: P93819 (confident match)
name: Malate dehydrogenase, cytoplasmic 1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
6-291
 ID: PF00056
score: 100.00 (hhsearch)
coverage over query:
6-155
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1b8p chain A
(very confident match)
coverage over query:
1-290
1g015897m 398 ID: O48902 (portable match)
name: Malate dehydrogenase [NADP], chloroplastic
def: The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells.
source: Medicago sativa (taxid: 3879)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
97-397
 ID: PF00056
score: 100.00 (hhsearch)
coverage over query:
97-245
 ID: GO:0009579 (confident match)
name: thylakoid
 PDB ID: 7mdh chain A
(very confident match)
coverage over query:
67-397
1g019713m 337 ID: Q2L068 (portable match)
name: Malate dehydrogenase
def: Catalyzes the reversible oxidation of malate to oxaloacetate.
source: Bordetella avium (strain 197N) (taxid: 360910)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
97-328
 ID: PF00056
score: 100.00 (hhsearch)
coverage over query:
97-245
 ID: GO:0009579 (confident match)
name: thylakoid
 PDB ID: 7mdh chain A
(very confident match)
coverage over query:
67-324
1g024248m 270 ID: O82399 (portable match)
name: Probable malate dehydrogenase, glyoxysomal
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
47-265
 ID: PF00056
score: 99.97 (hhsearch)
coverage over query:
47-190
 ID: GO:0009941 (confident match)
name: chloroplast envelope
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
44-267
1g022997m 289 ID: O82399 (portable match)
name: Probable malate dehydrogenase, glyoxysomal
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
47-289
 ID: PF00056
score: 100.00 (hhsearch)
coverage over query:
47-190
 ID: GO:0009941 (confident match)
name: chloroplast envelope
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
44-288
1g023671m 279 ID: O82399 (portable match)
name: Probable malate dehydrogenase, glyoxysomal
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
42-277
 ID: PF00056
score: 100.00 (hhsearch)
coverage over query:
42-185
 ID: GO:0009941 (confident match)
name: chloroplast envelope
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
39-277
1g022947m 289 ID: O82399 (portable match)
name: Probable malate dehydrogenase, glyoxysomal
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
47-289
 ID: PF00056
score: 100.00 (hhsearch)
coverage over query:
47-190
 ID: GO:0009941 (confident match)
name: chloroplast envelope
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
44-288
1g021932m 305 ID: O82399 (confident match)
name: Probable malate dehydrogenase, glyoxysomal
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
47-299
 ID: PF00056
score: 100.00 (hhsearch)
coverage over query:
47-190
 ID: GO:0009941 (confident match)
name: chloroplast envelope
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
44-302
1g025075m 258 ID: Q42972 (confident match)
name: Malate dehydrogenase, glyoxysomal
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
21-257
 ID: PF00056
score: 100.00 (hhsearch)
coverage over query:
21-164
 ID: GO:0009941 (confident match)
name: chloroplast envelope
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
17-256
1g028437m 209 ID: Q9LKA3 (portable match)
name: Malate dehydrogenase 2, mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
29-208
 ID: PF00056
score: 99.97 (hhsearch)
coverage over query:
29-172
 ID: GO:0048046 (confident match)
name: apoplast
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
26-205
1g016424m 390 ID: O82399 (confident match)
name: Probable malate dehydrogenase, glyoxysomal
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
42-346
 ID: PF00056
score: 100.00 (hhsearch)
coverage over query:
42-185
 ID: GO:0080093 (confident match)
name: regulation of photorespiration
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
38-365
1g022546m 295 ID: Q9ZP06 (confident match)
name: Malate dehydrogenase 1, mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
3-293
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
127-292
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
3-293
1g026051m 244 ID: O82399 (portable match)
name: Probable malate dehydrogenase, glyoxysomal
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
1-243
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
78-242
 ID: GO:0005777 (confident match)
name: peroxisome
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
1-243
1g018760m 350 ID: P00338 (portable match)
name: L-lactate dehydrogenase A chain
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
38-348
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
180-348
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3ldh chain A
(very confident match)
coverage over query:
34-350
1g020875m 320 ID: P57106 (confident match)
name: Malate dehydrogenase, cytoplasmic 2
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
6-318
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
157-318
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1b8p chain A
(very confident match)
coverage over query:
1-318
1g019990m 332 ID: P93819 (confident match)
name: Malate dehydrogenase, cytoplasmic 1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
6-331
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
157-330
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 5mdh chain A
(very confident match)
coverage over query:
3-331
1g017740m 366 ID: P93819 (confident match)
name: Malate dehydrogenase, cytoplasmic 1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
40-365
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
191-365
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 5mdh chain A
(very confident match)
coverage over query:
38-365
1g020022m 332 ID: P93819 (confident match)
name: Malate dehydrogenase, cytoplasmic 1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
6-331
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
157-331
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 5mdh chain A
(very confident match)
coverage over query:
4-332
1g021646m 309 ID: P93819 (confident match)
name: Malate dehydrogenase, cytoplasmic 1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
15-308
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
134-308
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 5mdh chain A
(very confident match)
coverage over query:
2-309
1g023853m 276 ID: Q5NVR2 (portable match)
name: Malate dehydrogenase, mitochondrial
def:
source: Pongo abelii (taxid: 9601)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
5-275
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
110-274
 ID: GO:0009061 (confident match)
name: anaerobic respiration
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
6-275
1g015172m 412 ID: Q9SN86 (confident match)
name: Malate dehydrogenase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
94-405
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
239-405
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
92-408
1g015131m 412 ID: Q9SN86 (confident match)
name: Malate dehydrogenase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
94-405
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
239-405
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
92-408
1g013619m 439 ID: O48902 (portable match)
name: Malate dehydrogenase [NADP], chloroplastic
def: The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells.
source: Medicago sativa (taxid: 3879)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
97-420
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
248-419
 ID: GO:0009579 (confident match)
name: thylakoid
 PDB ID: 7mdh chain A
(very confident match)
coverage over query:
67-439
1g015501m 405 ID: O48902 (portable match)
name: Malate dehydrogenase [NADP], chloroplastic
def: The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells.
source: Medicago sativa (taxid: 3879)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
97-404
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
248-404
 ID: GO:0009579 (confident match)
name: thylakoid
 PDB ID: 7mdh chain A
(very confident match)
coverage over query:
68-404
1g013466m 442 ID: O48902 (portable match)
name: Malate dehydrogenase [NADP], chloroplastic
def: The chloroplastic, NADP-dependent form is essential for the photosynthesis C4 cycle, which allows plants to circumvent the problem of photorespiration. In C4 plants, NADP-MDH activity acts to convert oxaloacetate to malate in chloroplasts of mesophyll cells for transport to the bundle sheath cells.
source: Medicago sativa (taxid: 3879)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
97-423
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
248-422
 ID: GO:0009579 (confident match)
name: thylakoid
 PDB ID: 7mdh chain A
(very confident match)
coverage over query:
67-442
1g018433m 356 ID: O82399 (confident match)
name: Probable malate dehydrogenase, glyoxysomal
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
45-355
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
190-354
 ID: GO:0009941 (confident match)
name: chloroplast envelope
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
41-355
1g018618m 353 ID: O82399 (confident match)
name: Probable malate dehydrogenase, glyoxysomal
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
42-352
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
187-351
 ID: GO:0009941 (confident match)
name: chloroplast envelope
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
39-352
1g018265m 358 ID: O82399 (confident match)
name: Probable malate dehydrogenase, glyoxysomal
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
47-357
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
192-356
 ID: GO:0009941 (confident match)
name: chloroplast envelope
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
44-357
1g018512m 354 ID: O82399 (confident match)
name: Probable malate dehydrogenase, glyoxysomal
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
43-353
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
188-352
 ID: GO:0009941 (confident match)
name: chloroplast envelope
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
40-353
1g019993m 332 ID: P46488 (confident match)
name: Malate dehydrogenase, glyoxysomal
def:
source: Cucumis sativus (taxid: 3659)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
21-331
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
166-330
 ID: GO:0048046 (confident match)
name: apoplast
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
15-331
1g020049m 332 ID: P46488 (confident match)
name: Malate dehydrogenase, glyoxysomal
def:
source: Cucumis sativus (taxid: 3659)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
21-331
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
166-330
 ID: GO:0048046 (confident match)
name: apoplast
 PDB ID: 1smk chain A
(very confident match)
coverage over query:
15-331
1g025329m 254 no hit ID: COG0040
name: HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
82-254
 ID: PF01634
score: 100.00 (hhsearch)
coverage over query:
132-254
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 2vd3 chain A
(very confident match)
coverage over query:
82-254
1g018852m 349 no hit ID: COG0040
name: HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
82-349
 ID: PF01634
score: 100.00 (hhsearch)
coverage over query:
132-312
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2vd3 chain A
(very confident match)
coverage over query:
82-349
1g018854m 349 no hit ID: COG0040
name: HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
82-349
 ID: PF01634
score: 100.00 (hhsearch)
coverage over query:
132-312
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2vd3 chain A
(very confident match)
coverage over query:
82-349
1g029926m 185 no hit ID: COG0041
name: PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
score:99.97 (hhsearch)
coverage over query:
113-185
 ID: PF00731
score: 99.93 (hhsearch)
coverage over query:
113-185
 ID: GO:0005737 (portable match)
name: cytoplasm
 PDB ID: 4b4k chain A
(very confident match)
coverage over query:
109-185
1g032570m 138 ID: P72157 (portable match)
name: N5-carboxyaminoimidazole ribonucleotide mutase
def: Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
source: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)
 ID: COG0041
name: PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-138
 ID: PF00731
score: 100.00 (hhsearch)
coverage over query:
1-138
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1o4v chain A
(very confident match)
coverage over query:
1-138
1g029271m 196 no hit ID: COG0041
name: PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
53-196
 ID: PF00731
score: 100.00 (hhsearch)
coverage over query:
53-196
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1o4v chain A
(very confident match)
coverage over query:
52-196
1g028883m 202 no hit ID: COG0041
name: PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
59-202
 ID: PF00731
score: 100.00 (hhsearch)
coverage over query:
59-202
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1o4v chain A
(very confident match)
coverage over query:
59-202
1g013701m 438 ID: P21264 (portable match)
name: Phosphoribosylaminoimidazole carboxylase
def:
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0041
name: PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
272-428
 ID: PF00731
score: 100.00 (hhsearch)
coverage over query:
271-420
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1o4v chain A
(very confident match)
coverage over query:
271-437
1g013695m 438 ID: P21264 (portable match)
name: Phosphoribosylaminoimidazole carboxylase
def:
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0041
name: PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
272-428
 ID: PF00731
score: 100.00 (hhsearch)
coverage over query:
271-420
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1o4v chain A
(very confident match)
coverage over query:
271-437
1g013729m 437 ID: P21264 (portable match)
name: Phosphoribosylaminoimidazole carboxylase
def:
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0041
name: PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
271-428
 ID: PF00731
score: 100.00 (hhsearch)
coverage over query:
270-419
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1o4v chain A
(very confident match)
coverage over query:
269-436
1g013661m 438 ID: P21264 (portable match)
name: Phosphoribosylaminoimidazole carboxylase
def:
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0041
name: PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
272-428
 ID: PF00731
score: 100.00 (hhsearch)
coverage over query:
271-420
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1o4v chain A
(very confident match)
coverage over query:
270-437
1g032094m 147 no hit ID: COG0041
name: PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
60-138
 ID: PF00731
score: 99.96 (hhsearch)
coverage over query:
59-138
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 4b4k chain A
(very confident match)
coverage over query:
56-145
1g032873m 131 no hit ID: COG0041
name: PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
59-131
 ID: PF00731
score: 99.95 (hhsearch)
coverage over query:
59-131
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1o4v chain A
(very confident match)
coverage over query:
59-131
1g029774m 188 no hit ID: COG0041
name: PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
score:99.97 (hhsearch)
coverage over query:
116-188
 ID: PF00731
score: 99.93 (hhsearch)
coverage over query:
116-188
 no hit PDB ID: 4b4k chain A
(very confident match)
coverage over query:
110-188
1g015044m 414 no hit ID: COG0041
name: PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
281-410
 ID: PF00731
score: 100.00 (hhsearch)
coverage over query:
280-410
 no hit PDB ID: 2fgc chain A
(very confident match)
coverage over query:
77-211
1g017148m 376 ID: Q8ZKH4 (portable match)
name: tRNA-dihydrouridine synthase A
def: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
source: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)
 ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-331
 ID: PF01207
score: 100.00 (hhsearch)
coverage over query:
12-328
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 1vhn chain A
(very confident match)
coverage over query:
5-334
1g017176m 376 ID: Q8ZKH4 (portable match)
name: tRNA-dihydrouridine synthase A
def: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
source: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)
 ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-331
 ID: PF01207
score: 100.00 (hhsearch)
coverage over query:
12-328
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 1vhn chain A
(very confident match)
coverage over query:
5-334
1g023442m 282 no hit ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-239
 ID: PF01207
score: 100.00 (hhsearch)
coverage over query:
2-234
 ID: GO:0005634 (portable match)
name: nucleus
 PDB ID: 3b0p chain A
(very confident match)
coverage over query:
2-240
1g013784m 436 no hit ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
60-391
 ID: PF01207
score: 100.00 (hhsearch)
coverage over query:
72-388
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 1vhn chain A
(very confident match)
coverage over query:
65-395
1g013789m 436 no hit ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
60-391
 ID: PF01207
score: 100.00 (hhsearch)
coverage over query:
72-388
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 1vhn chain A
(very confident match)
coverage over query:
65-395
1g013796m 436 no hit ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
60-391
 ID: PF01207
score: 100.00 (hhsearch)
coverage over query:
72-388
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 1vhn chain A
(very confident match)
coverage over query:
65-395
1g020423m 326 no hit ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
59-309
 ID: PF01207
score: 100.00 (hhsearch)
coverage over query:
72-308
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 3b0p chain A
(very confident match)
coverage over query:
66-316
1g026945m 230 no hit ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-207
 ID: PF01207
score: 100.00 (hhsearch)
coverage over query:
1-202
 ID: GO:0005739 (portable match)
name: mitochondrion
 PDB ID: 1vhn chain A
(very confident match)
coverage over query:
1-207
1g009196m 540 ID: Q9T0J6 (portable match)
name: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
def: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
178-517
 ID: PF01207
score: 100.00 (hhsearch)
coverage over query:
190-516
 ID: GO:0050660 (portable match)
name: flavin adenine dinucleotide binding
 PDB ID: 1vhn chain A
(very confident match)
coverage over query:
183-474,490-517
1g005508m 693 ID: Q9T0J6 (portable match)
name: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
def: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
332-670
 ID: PF01207
score: 100.00 (hhsearch)
coverage over query:
343-669
 ID: GO:0050660 (portable match)
name: flavin adenine dinucleotide binding
 PDB ID: 1vhn chain A
(very confident match)
coverage over query:
336-538,550-610
1g020428m 326 ID: Q9NX74 (portable match)
name: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like
def: Dihydrouridine synthase. Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
source: Homo sapiens (taxid: 9606)
 ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-308
 ID: PF01207
score: 100.00 (hhsearch)
coverage over query:
8-312
 ID: GO:0055114 (portable match)
name: oxidation-reduction process
 PDB ID: 1vhn chain A
(very confident match)
coverage over query:
1-308
1g023070m 287 no hit ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
5-263
 ID: PF01207
score: 100.00 (hhsearch)
coverage over query:
2-259
 ID: GO:0055114 (portable match)
name: oxidation-reduction process
 PDB ID: 1vhn chain A
(very confident match)
coverage over query:
4-263
1g013813m 436 no hit ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
99-412
 ID: PF01207
score: 100.00 (hhsearch)
coverage over query:
106-411
 ID: GO:0055114 (portable match)
name: oxidation-reduction process
 PDB ID: 1vhn chain A
(very confident match)
coverage over query:
102-413
1g019093m 346 ID: O04904 (confident match)
name: Dihydroorotase, mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0044
name: PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
3-345
 ID: PF12890
score: 99.73 (hhsearch)
coverage over query:
2-180
 ID: GO:0009507 (confident match)
name: chloroplast
 PDB ID: 2z26 chain A
(very confident match)
coverage over query:
1-345
1g015190m 411 ID: Q1RF23 (portable match)
name: Allantoinase
def: Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring.
source: Escherichia coli (strain UTI89 / UPEC) (taxid: 364106)
 ID: COG0044
name: PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-402
 ID: PF13147
score: 99.77 (hhsearch)
coverage over query:
1-348
 ID: GO:0005783 (confident match)
name: endoplasmic reticulum
 PDB ID: 2ftw chain A
(very confident match)
coverage over query:
1-410
1g013050m 450 ID: Q1RF23 (portable match)
name: Allantoinase
def: Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring.
source: Escherichia coli (strain UTI89 / UPEC) (taxid: 364106)
 ID: COG0044
name: PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-441
 ID: PF13147
score: 99.85 (hhsearch)
coverage over query:
33-387
 ID: GO:0005783 (confident match)
name: endoplasmic reticulum
 PDB ID: 2ftw chain A
(very confident match)
coverage over query:
2-449
1g015182m 411 ID: Q1RF23 (portable match)
name: Allantoinase
def: Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring.
source: Escherichia coli (strain UTI89 / UPEC) (taxid: 364106)
 ID: COG0044
name: PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-402
 ID: PF13147
score: 99.77 (hhsearch)
coverage over query:
1-348
 ID: GO:0005783 (confident match)
name: endoplasmic reticulum
 PDB ID: 2ftw chain A
(very confident match)
coverage over query:
1-410
1g010547m 507 ID: Q1RF23 (portable match)
name: Allantoinase
def: Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring.
source: Escherichia coli (strain UTI89 / UPEC) (taxid: 364106)
 ID: COG0044
name: PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
44-497
 ID: PF13147
score: 99.81 (hhsearch)
coverage over query:
90-444
 ID: GO:0005783 (confident match)
name: endoplasmic reticulum
 PDB ID: 2ftw chain A
(very confident match)
coverage over query:
41-506
1g014320m 427 ID: Q55DL0 (portable match)
name: Dihydropyrimidinase
def: Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate.
source: Dictyostelium discoideum (taxid: 44689)
 ID: COG0044
name: PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
54-426
 ID: PF13147
score: 99.69 (hhsearch)
coverage over query:
97-426
 ID: GO:0005794 (confident match)
name: Golgi apparatus
 PDB ID: 2ftw chain A
(very confident match)
coverage over query:
52-426
1g009410m 535 ID: Q55DL0 (portable match)
name: Dihydropyrimidinase
def: Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate.
source: Dictyostelium discoideum (taxid: 44689)
 ID: COG0044
name: PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
54-494
 ID: PF13147
score: 99.87 (hhsearch)
coverage over query:
97-442
 ID: GO:0005794 (confident match)
name: Golgi apparatus
 PDB ID: 2ftw chain A
(very confident match)
coverage over query:
52-521
1g009282m 538 ID: Q55DL0 (portable match)
name: Dihydropyrimidinase
def: Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate.
source: Dictyostelium discoideum (taxid: 44689)
 ID: COG0044
name: PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
54-497
 ID: PF13147
score: 99.87 (hhsearch)
coverage over query:
97-445
 ID: GO:0005794 (confident match)
name: Golgi apparatus
 PDB ID: 2ftw chain A
(very confident match)
coverage over query:
52-524
1g020186m 329 ID: O04904 (confident match)
name: Dihydroorotase, mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0044
name: PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
3-328
 ID: PF13147
score: 99.18 (hhsearch)
coverage over query:
6-294
 ID: GO:0009507 (confident match)
name: chloroplast
 PDB ID: 2z26 chain A
(very confident match)
coverage over query:
8-328
1g015110m 413 no hit ID: COG0044
name: PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
43-413
 ID: PF13594
score: 99.64 (hhsearch)
coverage over query:
63-133
 ID: GO:0005783 (confident match)
name: endoplasmic reticulum
 PDB ID: 2fty chain A
(very confident match)
coverage over query:
41-412
1g015826m 399 no hit ID: COG0044
name: PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
43-398
 ID: PF13594
score: 99.65 (hhsearch)
coverage over query:
63-133
 ID: GO:0005783 (confident match)
name: endoplasmic reticulum
 PDB ID: 2fty chain A
(very confident match)
coverage over query:
41-398
1g020079m 331 no hit ID: COG0044
name: PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
54-323
 ID: PF13594
score: 99.65 (hhsearch)
coverage over query:
73-142
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 2ftw chain A
(very confident match)
coverage over query:
53-323
1g026236m 241 ID: Q2QZ86 (portable match)
name: ATP-citrate synthase alpha chain protein 2
def: ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0045
name: SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
1-240
 ID: PF00549
score: 99.85 (hhsearch)
coverage over query:
93-234
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3mwd chain A
(very confident match)
coverage over query:
2-235
1g024560m 266 ID: Q2QZ86 (confident match)
name: ATP-citrate synthase alpha chain protein 2
def: ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0045
name: SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
4-264
 ID: PF00549
score: 99.80 (hhsearch)
coverage over query:
118-260
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3mwd chain A
(very confident match)
coverage over query:
7-260
1g022648m 294 ID: Q6K9N6 (portable match)
name: Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0045
name: SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
28-253
 ID: PF08442
score: 100.00 (hhsearch)
coverage over query:
29-238
 ID: GO:0005507 (portable match)
name: copper ion binding
 PDB ID: 3ufx chain B
(very confident match)
coverage over query:
28-252
1g016159m 394 ID: Q6K9N6 (confident match)
name: Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0045
name: SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
28-386
 ID: PF08442
score: 100.00 (hhsearch)
coverage over query:
29-238
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 2fp4 chain B
(very confident match)
coverage over query:
28-386
1g014588m 422 ID: Q6K9N6 (confident match)
name: Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0045
name: SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
28-421
 ID: PF08442
score: 100.00 (hhsearch)
coverage over query:
29-238
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 2fp4 chain B
(very confident match)
coverage over query:
28-422
1g014493m 423 ID: O22718 (confident match)
name: ATP-citrate synthase alpha chain protein 2
def: ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. Required for normal growth and development and elongation of C18 fatty acids to C20 to C24 fatty acids in seeds. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0045
name: SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
4-421
 ID: PF08442
score: 100.00 (hhsearch)
coverage over query:
5-204
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3mwd chain A
(very confident match)
coverage over query:
1-417
1g014512m 423 ID: O22718 (confident match)
name: ATP-citrate synthase alpha chain protein 2
def: ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. Required for normal growth and development and elongation of C18 fatty acids to C20 to C24 fatty acids in seeds. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0045
name: SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
4-421
 ID: PF08442
score: 100.00 (hhsearch)
coverage over query:
5-204
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3mwd chain A
(very confident match)
coverage over query:
1-417
1g014514m 423 ID: Q2QZ86 (confident match)
name: ATP-citrate synthase alpha chain protein 2
def: ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0045
name: SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
4-421
 ID: PF08442
score: 100.00 (hhsearch)
coverage over query:
5-204
 ID: GO:0005829 (very confident match)
name: cytosol
 PDB ID: 3mwd chain A
(very confident match)
coverage over query:
1-417
1g017966m 363 ID: Q2QZ86 (confident match)
name: ATP-citrate synthase alpha chain protein 2
def: ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0045
name: SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
1-361
 ID: PF08442
score: 100.00 (hhsearch)
coverage over query:
1-144
 ID: GO:0005829 (very confident match)
name: cytosol
 PDB ID: 3mwd chain A
(very confident match)
coverage over query:
1-357
1g019240m 344 ID: Q2QZ86 (confident match)
name: ATP-citrate synthase alpha chain protein 2
def: ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0045
name: SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
4-337
 ID: PF08442
score: 100.00 (hhsearch)
coverage over query:
5-204
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3mwd chain A
(very confident match)
coverage over query:
1-323
1g020234m 329 ID: Q2QZ86 (confident match)
name: ATP-citrate synthase alpha chain protein 2
def: ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA, used for the elongation of fatty acids and biosynthesis of isoprenoids, flavonoids and malonated derivatives. May supply substrate to the cytosolic acetyl-CoA carboxylase, which generates the malonyl-CoA used for the synthesis of a multitude of compounds, including very long chain fatty acids and flavonoids. In contrast to all known animal ACL enzymes having a homomeric structure, plant ACLs are composed of alpha and beta chains.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0045
name: SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
3-327
 ID: PF08442
score: 99.95 (hhsearch)
coverage over query:
1-110
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3mwd chain A
(very confident match)
coverage over query:
4-323
1g001542m 1057 ID: Q9M8D3 (portable match)
name: Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial
def: Essential to the male gametophyte development.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0046
name: PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
263-737
 ID: PF13507
score: 100.00 (hhsearch)
coverage over query:
787-1056
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 3ugj chain A
(very confident match)
coverage over query:
419-899,911-1056
1g000571m 1414 ID: Q9M8D3 (confident match)
name: Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial
def: Essential to the male gametophyte development.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0046
name: PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
263-1094
 ID: PF13507
score: 100.00 (hhsearch)
coverage over query:
1144-1413
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3ugj chain A
(very confident match)
coverage over query:
85-164,175-693,705-1256
,1268-1413
1g000573m 1414 ID: Q9M8D3 (confident match)
name: Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial
def: Essential to the male gametophyte development.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0046
name: PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
263-1094
 ID: PF13507
score: 100.00 (hhsearch)
coverage over query:
1144-1413
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3ugj chain A
(very confident match)
coverage over query:
85-164,175-693,705-1256
,1268-1413
1g000572m 1414 ID: Q9M8D3 (confident match)
name: Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial
def: Essential to the male gametophyte development.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0046
name: PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
263-1094
 ID: PF13507
score: 100.00 (hhsearch)
coverage over query:
1144-1413
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3ugj chain A
(very confident match)
coverage over query:
85-164,175-693,705-1256
,1268-1413
1g000574m 1414 ID: Q9M8D3 (confident match)
name: Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial
def: Essential to the male gametophyte development.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0046
name: PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
263-1094
 ID: PF13507
score: 100.00 (hhsearch)
coverage over query:
1144-1413
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3ugj chain A
(very confident match)
coverage over query:
85-164,175-693,705-1256
,1268-1413
1g032641m 136 ID: P49201 (confident match)
name: 40S ribosomal protein S23-2
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0048
name: RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-135
 ID: PF00164
score: 100.00 (hhsearch)
coverage over query:
23-135
 ID: GO:0022627 (very confident match)
name: cytosolic small ribosomal subunit
 PDB ID: 2xzm chain L
(very confident match)
coverage over query:
1-133
1g032383m 142 ID: P49201 (confident match)
name: 40S ribosomal protein S23-2
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0048
name: RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
7-141
 ID: PF00164
score: 100.00 (hhsearch)
coverage over query:
29-141
 ID: GO:0022627 (very confident match)
name: cytosolic small ribosomal subunit
 PDB ID: 2xzm chain L
(very confident match)
coverage over query:
1-139
1g042342m 87 ID: P62267 (portable match)
name: 40S ribosomal protein S23
def:
source: Mus musculus (taxid: 10090)
 ID: COG0048
name: RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-81
 ID: PF00164
score: 100.00 (hhsearch)
coverage over query:
1-81
 ID: GO:0022627 (confident match)
name: cytosolic small ribosomal subunit
 PDB ID: 2xzm chain L
(very confident match)
coverage over query:
1-81
1g028585m 207 ID: Q5E988 (confident match)
name: 40S ribosomal protein S5
def:
source: Bos taurus (taxid: 9913)
 ID: COG0049
name: RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
52-207
 ID: PF00177
score: 100.00 (hhsearch)
coverage over query:
52-207
 ID: GO:0005576 (confident match)
name: extracellular region
 PDB ID: 2zkq chain g
(very confident match)
coverage over query:
17-207
1g029666m 190 ID: Q5E988 (confident match)
name: 40S ribosomal protein S5
def:
source: Bos taurus (taxid: 9913)
 ID: COG0049
name: RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
52-189
 ID: PF00177
score: 100.00 (hhsearch)
coverage over query:
52-189
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 3iz6 chain F
(very confident match)
coverage over query:
20-189
1g044530m 151 ID: Q9ZUT9 (confident match)
name: 40S ribosomal protein S5-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0049
name: RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-151
 ID: PF00177
score: 100.00 (hhsearch)
coverage over query:
1-151
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 2zkq chain g
(very confident match)
coverage over query:
1-151
1g020176m 330 ID: Q8KT95 (portable match)
name: Elongation factor Tu
def: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.
source: Rickettsia typhi (strain ATCC VR-144 / Wilmington) (taxid: 257363)
 ID: COG0050
name: TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
57-329
 ID: PF00009
score: 99.98 (hhsearch)
coverage over query:
63-257
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 2c78 chain A
(very confident match)
coverage over query:
60-330
1g013007m 451 ID: Q8KT95 (confident match)
name: Elongation factor Tu
def: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.
source: Rickettsia typhi (strain ATCC VR-144 / Wilmington) (taxid: 257363)
 ID: COG0050
name: TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
57-451
 ID: PF00009
score: 100.00 (hhsearch)
coverage over query:
63-257
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 2c78 chain A
(very confident match)
coverage over query:
59-451
1g011581m 482 ID: Q8DI42 (confident match)
name: Elongation factor Tu
def: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.
source: Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)
 ID: COG0050
name: TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
75-482
 ID: PF00009
score: 100.00 (hhsearch)
coverage over query:
83-285
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2c78 chain A
(very confident match)
coverage over query:
79-482
1g041275m 187 ID: Q9LK61 (portable match)
name: 30S ribosomal protein S10, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0051
name: RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
88-187
 ID: PF00338
score: 99.98 (hhsearch)
coverage over query:
91-187
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3bbn chain J
(very confident match)
coverage over query:
50-187
1g033482m 118 ID: Q9STY6 (confident match)
name: 40S ribosomal protein S20-2
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0051
name: RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
18-116
 ID: PF00338
score: 100.00 (hhsearch)
coverage over query:
23-115
 ID: GO:0022627 (very confident match)
name: cytosolic small ribosomal subunit
 PDB ID: 3iz6 chain J
(very confident match)
coverage over query:
8-117
1g021262m 315 ID: A5BUU4 (confident match)
name: 40S ribosomal protein SA
def: Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
source: Vitis vinifera (taxid: 29760)
 ID: COG0052
name: RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
16-204
 ID: PF00318
score: 100.00 (hhsearch)
coverage over query:
22-190
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 3iz6 chain A
(very confident match)
coverage over query:
12-209
1g018448m 355 ID: A5BUU4 (portable match)
name: 40S ribosomal protein SA
def: Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
source: Vitis vinifera (taxid: 29760)
 ID: COG0052
name: RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
15-204
 ID: PF00318
score: 100.00 (hhsearch)
coverage over query:
22-190
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 3iz6 chain A
(very confident match)
coverage over query:
12-209
1g021180m 316 ID: A5BUU4 (confident match)
name: 40S ribosomal protein SA
def: Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
source: Vitis vinifera (taxid: 29760)
 ID: COG0052
name: RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
16-194
 ID: PF00318
score: 100.00 (hhsearch)
coverage over query:
22-190
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 3iz6 chain A
(very confident match)
coverage over query:
12-209
1g023492m 281 ID: O80632 (confident match)
name: Metal tolerance protein 11
def: Cation/proton antiporter involved in endogenous manganese tolerance probably through vesicular trafficking and exocytosis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-273
 ID: PF01545
score: 100.00 (hhsearch)
coverage over query:
1-271
 ID: GO:0005794 (confident match)
name: Golgi apparatus
 PDB ID: 3h90 chain A
(very confident match)
coverage over query:
2-271
1g023476m 281 ID: O80632 (confident match)
name: Metal tolerance protein 11
def: Cation/proton antiporter involved in endogenous manganese tolerance probably through vesicular trafficking and exocytosis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-273
 ID: PF01545
score: 100.00 (hhsearch)
coverage over query:
1-271
 ID: GO:0005794 (confident match)
name: Golgi apparatus
 PDB ID: 3h90 chain A
(very confident match)
coverage over query:
2-271
1g020595m 324 ID: O80632 (confident match)
name: Metal tolerance protein 11
def: Cation/proton antiporter involved in endogenous manganese tolerance probably through vesicular trafficking and exocytosis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-318
 ID: PF01545
score: 100.00 (hhsearch)
coverage over query:
36-314
 ID: GO:0005794 (confident match)
name: Golgi apparatus
 PDB ID: 3h90 chain A
(very confident match)
coverage over query:
33-314
1g017713m 367 ID: O80632 (confident match)
name: Metal tolerance protein 11
def: Cation/proton antiporter involved in endogenous manganese tolerance probably through vesicular trafficking and exocytosis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
70-359
 ID: PF01545
score: 100.00 (hhsearch)
coverage over query:
79-357
 ID: GO:0005794 (confident match)
name: Golgi apparatus
 PDB ID: 3h90 chain A
(very confident match)
coverage over query:
76-357
1g020591m 324 ID: O80632 (confident match)
name: Metal tolerance protein 11
def: Cation/proton antiporter involved in endogenous manganese tolerance probably through vesicular trafficking and exocytosis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-318
 ID: PF01545
score: 100.00 (hhsearch)
coverage over query:
36-314
 ID: GO:0005794 (confident match)
name: Golgi apparatus
 PDB ID: 3h90 chain A
(very confident match)
coverage over query:
33-314
1g017950m 363 ID: Q0WU02 (portable match)
name: Metal tolerance protein 10
def: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
69-357
 ID: PF01545
score: 100.00 (hhsearch)
coverage over query:
76-353
 ID: GO:0005794 (confident match)
name: Golgi apparatus
 PDB ID: 3j1z chain P
(very confident match)
coverage over query:
70-354
1g035690m 420 ID: Q0WU02 (confident match)
name: Metal tolerance protein 10
def: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
126-414
 ID: PF01545
score: 100.00 (hhsearch)
coverage over query:
134-411
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 3j1z chain P
(very confident match)
coverage over query:
129-411
1g015269m 410 ID: Q10PP8 (confident match)
name: Metal tolerance protein 4
def: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
107-398
 ID: PF01545
score: 100.00 (hhsearch)
coverage over query:
117-394
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 3h90 chain A
(very confident match)
coverage over query:
114-394
1g017001m 379 ID: Q10PP8 (confident match)
name: Metal tolerance protein 4
def: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
107-373
 ID: PF01545
score: 100.00 (hhsearch)
coverage over query:
117-375
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 3h90 chain A
(very confident match)
coverage over query:
114-375
1g016160m 394 ID: Q5NA18 (confident match)
name: Metal tolerance protein 5
def: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
98-387
 ID: PF01545
score: 100.00 (hhsearch)
coverage over query:
106-384
 ID: GO:0005794 (confident match)
name: Golgi apparatus
 PDB ID: 3h90 chain A
(very confident match)
coverage over query:
103-385
1g021846m 306 ID: Q5NA18 (portable match)
name: Metal tolerance protein 5
def: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
99-305
 ID: PF01545
score: 99.95 (hhsearch)
coverage over query:
106-303
 ID: GO:0005794 (confident match)
name: Golgi apparatus
 PDB ID: 3h90 chain A
(very confident match)
coverage over query:
103-304
1g015157m 412 ID: Q9M2P2 (confident match)
name: Putative metal tolerance protein C3
def: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
108-402
 ID: PF01545
score: 100.00 (hhsearch)
coverage over query:
118-396
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 3j1z chain P
(very confident match)
coverage over query:
112-396
1g022609m 294 ID: Q9M2P2 (portable match)
name: Putative metal tolerance protein C3
def: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-283
 ID: PF01545
score: 100.00 (hhsearch)
coverage over query:
1-278
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 3j1z chain P
(very confident match)
coverage over query:
2-283
1g011644m 480 ID: Q8H1G3 (confident match)
name: Metal tolerance protein C4
def: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
133-474
 ID: PF01545
score: 100.00 (hhsearch)
coverage over query:
141-474
 ID: GO:0016021 (portable match)
name: integral to membrane
 PDB ID: 3j1z chain P
(very confident match)
coverage over query:
135-406,447-477
1g032430m 141 ID: Q10LJ2 (portable match)
name: Metal tolerance protein 2
def: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:99.53 (hhsearch)
coverage over query:
2-70
 ID: PF01545
score: 99.27 (hhsearch)
coverage over query:
2-67
 no hit PDB ID: 2zzt chain A
(very confident match)
coverage over query:
2-67
1g033140m 126 ID: Q10LJ2 (portable match)
name: Metal tolerance protein 2
def: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:99.55 (hhsearch)
coverage over query:
2-71
 ID: PF01545
score: 99.29 (hhsearch)
coverage over query:
2-67
 no hit PDB ID: 2zzt chain A
(very confident match)
coverage over query:
2-67
1g032755m 134 ID: Q10LJ2 (portable match)
name: Metal tolerance protein 2
def: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:99.54 (hhsearch)
coverage over query:
2-71
 ID: PF01545
score: 99.29 (hhsearch)
coverage over query:
2-67
 no hit PDB ID: 3j1z chain P
(very confident match)
coverage over query:
2-71
1g017826m 365 ID: Q8H1G3 (portable match)
name: Metal tolerance protein C4
def: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
131-361
 ID: PF01545
score: 99.95 (hhsearch)
coverage over query:
141-360
 no hit PDB ID: 3h90 chain A
(very confident match)
coverage over query:
138-361
1g030287m 180 no hit ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:99.46 (hhsearch)
coverage over query:
2-71
 ID: PF01545
score: 99.11 (hhsearch)
coverage over query:
2-67
 no hit PDB ID: 2zzt chain A
(very confident match)
coverage over query:
2-67
1g027801m 218 ID: O80575 (confident match)
name: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic
def: Catalyzes the condensation of 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate yielding 6,7-dimethyl-8-lumazine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0054
name: RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
63-215
 ID: PF00885
score: 100.00 (hhsearch)
coverage over query:
74-215
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1c2y chain A
(very confident match)
coverage over query:
64-217
1g032216m 145 no hit ID: COG0054
name: RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
score:99.96 (hhsearch)
coverage over query:
63-145
 ID: PF00885
score: 99.94 (hhsearch)
coverage over query:
74-145
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1c2y chain A
(very confident match)
coverage over query:
64-145
1g008610m 559 ID: Q01859 (confident match)
name: ATP synthase subunit beta, mitochondrial
def: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0055
name: AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
86-536
 ID: PF00006
score: 100.00 (hhsearch)
coverage over query:
212-434
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 1sky chain E
(very confident match)
coverage over query:
86-534
1g018957m 348 ID: Q01859 (portable match)
name: ATP synthase subunit beta, mitochondrial
def: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0055
name: AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
86-347
 ID: PF00006
score: 100.00 (hhsearch)
coverage over query:
212-347
 ID: GO:0005509 (portable match)
name: calcium ion binding
 PDB ID: 1sky chain E
(very confident match)
coverage over query:
86-347
1g014228m 428 ID: Q01859 (portable match)
name: ATP synthase subunit beta, mitochondrial
def: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0055
name: AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
86-421
 ID: PF00006
score: 100.00 (hhsearch)
coverage over query:
212-421
 ID: GO:0005509 (confident match)
name: calcium ion binding
 PDB ID: 2ck3 chain D
(very confident match)
coverage over query:
81-421
1g014249m 428 ID: Q01859 (portable match)
name: ATP synthase subunit beta, mitochondrial
def: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0055
name: AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
86-421
 ID: PF00006
score: 100.00 (hhsearch)
coverage over query:
212-421
 ID: GO:0005509 (confident match)
name: calcium ion binding
 PDB ID: 2ck3 chain D
(very confident match)
coverage over query:
81-421
1g008638m 558 ID: Q89X74 (confident match)
name: ATP synthase subunit beta
def: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
source: Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)
 ID: COG0055
name: AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
86-554
 ID: PF00006
score: 100.00 (hhsearch)
coverage over query:
212-434
 ID: GO:0005509 (confident match)
name: calcium ion binding
 PDB ID: 2ck3 chain D
(very confident match)
coverage over query:
82-555
1g024629m 265 ID: Q7FAH2 (confident match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic
def: Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
3-265
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
4-154
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 3e5r chain O
(very confident match)
coverage over query:
1-265
1g027137m 227 ID: Q7FAH2 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic
def: Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
4-227
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
4-154
 ID: GO:0005507 (portable match)
name: copper ion binding
 PDB ID: 3e5r chain O
(very confident match)
coverage over query:
1-227
1g024565m 265 ID: Q7FAH2 (confident match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic
def: Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
3-265
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
4-154
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 3e5r chain O
(very confident match)
coverage over query:
1-265
1g029791m 188 ID: Q9FX54 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic
def: Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism (By similarity). Binds DNA in vitro.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
4-188
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
4-154
 ID: GO:0005507 (portable match)
name: copper ion binding
 PDB ID: 3e5r chain O
(very confident match)
coverage over query:
1-188
1g029788m 188 ID: Q9FX54 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic
def: Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism (By similarity). Binds DNA in vitro.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
4-188
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
4-154
 ID: GO:0005507 (portable match)
name: copper ion binding
 PDB ID: 3e5r chain O
(very confident match)
coverage over query:
1-187
1g019933m 334 ID: P04797 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase
def: Has both glyceraldehyde-3-phosphate dehydrogenase and nitrosylase activities, thereby playing a role in glycolysis and nuclear functions, respectively. Glyceraldehyde-3-phosphate dehydrogenase is a key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Also participates in nuclear events including transcription, RNA transport, DNA replication and apoptosis. Nuclear functions are probably due to the nitrosylase activity that mediates cysteine S-nitrosylation of nuclear target proteins such as SIRT1, HDAC2 and PRKDC.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
89-315
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
90-239
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3cps chain A
(very confident match)
coverage over query:
88-313
1g016451m 389 ID: P0CN74 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase
def:
source: Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
89-385
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
90-239
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3pym chain A
(very confident match)
coverage over query:
90-384
1g025639m 250 ID: P25858 (confident match)
name: Glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
7-249
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
7-157
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3e5r chain O
(very confident match)
coverage over query:
1-228
1g022491m 296 ID: Q7FAH2 (confident match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic
def: Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
6-296
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
7-157
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3e5r chain O
(very confident match)
coverage over query:
5-296
1g027805m 218 ID: Q7FAH2 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic
def: Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
4-208
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
4-154
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3e5r chain O
(very confident match)
coverage over query:
1-211
1g025476m 252 ID: Q7FAH2 (confident match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic
def: Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
4-243
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
4-154
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3e5r chain O
(very confident match)
coverage over query:
1-217
1g025368m 254 ID: Q7FAH2 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic
def: Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
3-254
 ID: PF00044
score: 99.94 (hhsearch)
coverage over query:
4-143
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3e5r chain O
(very confident match)
coverage over query:
1-254
1g022023m 304 ID: P12859 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
def:
source: Pisum sativum (taxid: 3888)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
86-295
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
87-240
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 3cps chain A
(very confident match)
coverage over query:
85-295
1g021979m 304 ID: P12859 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
def:
source: Pisum sativum (taxid: 3888)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
86-295
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
87-240
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 3cps chain A
(very confident match)
coverage over query:
85-295
1g023894m 275 ID: P25857 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
86-267
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
87-241
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 2g82 chain O
(very confident match)
coverage over query:
87-267
1g020217m 329 ID: P25857 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
86-298
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
87-240
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3cps chain A
(very confident match)
coverage over query:
84-296
1g024321m 269 ID: P25857 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
86-268
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
87-240
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 3cps chain A
(very confident match)
coverage over query:
85-268
1g024349m 269 ID: P25857 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
86-268
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
87-240
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 3cps chain A
(very confident match)
coverage over query:
85-268
1g025793m 248 ID: P25857 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
86-243
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
87-239
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 3cps chain A
(very confident match)
coverage over query:
85-242
1g021697m 309 ID: P25857 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
86-267
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
87-240
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 2g82 chain O
(very confident match)
coverage over query:
87-267
1g025797m 248 ID: P25857 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
86-243
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
87-239
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 3cps chain A
(very confident match)
coverage over query:
85-242
1g023934m 275 ID: P25857 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
86-267
 ID: PF00044
score: 100.00 (hhsearch)
coverage over query:
87-241
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 2g82 chain O
(very confident match)
coverage over query:
87-267
1g014424m 425 ID: P07487 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
89-421
 ID: PF02800
score: 100.00 (hhsearch)
coverage over query:
244-401
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 3cps chain A
(very confident match)
coverage over query:
87-421
1g036908m 72 ID: Q9FX54 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic
def: Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism (By similarity). Binds DNA in vitro.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:99.93 (hhsearch)
coverage over query:
1-70
 ID: PF02800
score: 99.71 (hhsearch)
coverage over query:
2-51
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 3e5r chain O
(very confident match)
coverage over query:
2-72
1g021899m 306 ID: P25858 (confident match)
name: Glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
5-306
 ID: PF02800
score: 100.00 (hhsearch)
coverage over query:
127-284
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3e5r chain O
(very confident match)
coverage over query:
4-304
1g019445m 341 ID: Q9FX54 (confident match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic
def: Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism (By similarity). Binds DNA in vitro.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
6-341
 ID: PF02800
score: 100.00 (hhsearch)
coverage over query:
162-319
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3e5r chain O
(very confident match)
coverage over query:
5-339
1g047709m 93 no hit ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-93
 ID: PF02800
score: 100.00 (hhsearch)
coverage over query:
1-85
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3e5r chain O
(very confident match)
coverage over query:
1-93
1g014890m 416 ID: P25856 (confident match)
name: Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
68-415
 ID: PF02800
score: 100.00 (hhsearch)
coverage over query:
225-394
 ID: GO:0009535 (confident match)
name: chloroplast thylakoid membrane
 PDB ID: 1rm4 chain O
(very confident match)
coverage over query:
68-236,250-416
1g022704m 293 ID: P34917 (portable match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2
def:
source: Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
20-292
 ID: PF02800
score: 100.00 (hhsearch)
coverage over query:
115-271
 ID: GO:0009535 (confident match)
name: chloroplast thylakoid membrane
 PDB ID: 2d2i chain A
(very confident match)
coverage over query:
21-291
1g015637m 403 ID: P25856 (confident match)
name: Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
68-402
 ID: PF02800
score: 100.00 (hhsearch)
coverage over query:
225-381
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rm4 chain O
(very confident match)
coverage over query:
68-403
1g013492m 442 ID: P25856 (confident match)
name: Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
68-441
 ID: PF02800
score: 100.00 (hhsearch)
coverage over query:
225-420
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1rm4 chain O
(very confident match)
coverage over query:
68-237,277-442
1g012940m 453 ID: P25857 (confident match)
name: Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
86-423
 ID: PF02800
score: 100.00 (hhsearch)
coverage over query:
245-402
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2d2i chain A
(very confident match)
coverage over query:
85-451
1g015291m 409 ID: P25857 (confident match)
name: Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
86-409
 ID: PF02800
score: 100.00 (hhsearch)
coverage over query:
245-402
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2d2i chain A
(very confident match)
coverage over query:
85-409
1g007597m 596 ID: Q9SD76 (portable match)
name: Alpha-glucan phosphorylase 2, cytosolic
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-595
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
116-596
 ID: GO:0008144 (portable match)
name: drug binding
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
17-595
1g004485m 749 ID: Q9SD76 (confident match)
name: Alpha-glucan phosphorylase 2, cytosolic
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-745
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
25-745
 ID: GO:0008144 (confident match)
name: drug binding
 PDB ID: 1ygp chain A
(very confident match)
coverage over query:
1-743
1g003742m 799 ID: Q9SD76 (confident match)
name: Alpha-glucan phosphorylase 2, cytosolic
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-799
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
116-799
 ID: GO:0008144 (confident match)
name: drug binding
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
18-799
1g003186m 840 ID: Q9SD76 (confident match)
name: Alpha-glucan phosphorylase 2, cytosolic
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-836
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
116-836
 ID: GO:0008144 (confident match)
name: drug binding
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
17-839
1g003196m 840 ID: Q9SD76 (confident match)
name: Alpha-glucan phosphorylase 2, cytosolic
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-836
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
116-836
 ID: GO:0008144 (confident match)
name: drug binding
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
17-839
1g003693m 802 ID: Q9SD76 (confident match)
name: Alpha-glucan phosphorylase 2, cytosolic
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-801
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
116-801
 ID: GO:0008144 (confident match)
name: drug binding
 PDB ID: 1ygp chain A
(very confident match)
coverage over query:
56-798
1g003202m 840 ID: Q9SD76 (confident match)
name: Alpha-glucan phosphorylase 2, cytosolic
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-836
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
116-836
 ID: GO:0008144 (confident match)
name: drug binding
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
17-839
1g003197m 840 ID: Q9SD76 (confident match)
name: Alpha-glucan phosphorylase 2, cytosolic
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-836
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
116-836
 ID: GO:0008144 (confident match)
name: drug binding
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
17-839
1g003188m 840 ID: Q9SD76 (confident match)
name: Alpha-glucan phosphorylase 2, cytosolic
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-836
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
116-836
 ID: GO:0008144 (confident match)
name: drug binding
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
17-839
1g005402m 698 ID: P79334 (portable match)
name: Glycogen phosphorylase, muscle form
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Bos taurus (taxid: 9913)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-694
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
25-694
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
1-698
1g003875m 790 ID: Q9LIB2 (portable match)
name: Alpha-glucan phosphorylase 1
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (By similarity). May be not required for the degradation of starch, but the phosphorolysis of starch may play an important role in water stress tolerance.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-786
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
1-786
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
1-288,381-790
1g003072m 850 ID: Q9LIB2 (confident match)
name: Alpha-glucan phosphorylase 1
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (By similarity). May be not required for the degradation of starch, but the phosphorolysis of starch may play an important role in water stress tolerance.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-846
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
25-846
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
1-348,441-850
1g003079m 850 ID: Q9LIB2 (confident match)
name: Alpha-glucan phosphorylase 1
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (By similarity). May be not required for the degradation of starch, but the phosphorolysis of starch may play an important role in water stress tolerance.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-846
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
25-846
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
1-348,441-850
1g002111m 965 ID: Q9LIB2 (confident match)
name: Alpha-glucan phosphorylase 1
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (By similarity). May be not required for the degradation of starch, but the phosphorolysis of starch may play an important role in water stress tolerance.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
88-961
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
176-961
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
88-499,545-545,560-965
1g003074m 850 ID: Q9LIB2 (confident match)
name: Alpha-glucan phosphorylase 1
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (By similarity). May be not required for the degradation of starch, but the phosphorolysis of starch may play an important role in water stress tolerance.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-846
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
25-846
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
1-348,441-850
1g003055m 852 ID: Q9LIB2 (confident match)
name: Alpha-glucan phosphorylase 1
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (By similarity). May be not required for the degradation of starch, but the phosphorolysis of starch may play an important role in water stress tolerance.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-848
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
25-848
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
1-350,443-852
1g026345m 240 no hit ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
21-240
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
24-240
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1ygp chain A
(very confident match)
coverage over query:
21-240
1g004696m 736 ID: Q9SD76 (confident match)
name: Alpha-glucan phosphorylase 2, cytosolic
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-733
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
116-734
 ID: GO:0046686 (confident match)
name: response to cadmium ion
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
18-731
1g009651m 530 ID: Q9SD76 (portable match)
name: Alpha-glucan phosphorylase 2, cytosolic
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-529
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
116-529
 ID: GO:0046686 (portable match)
name: response to cadmium ion
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
17-529
1g004697m 736 ID: Q9SD76 (confident match)
name: Alpha-glucan phosphorylase 2, cytosolic
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-733
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
116-734
 ID: GO:0046686 (confident match)
name: response to cadmium ion
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
18-731
1g001879m 1001 ID: Q9LIB2 (confident match)
name: Alpha-glucan phosphorylase 1
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (By similarity). May be not required for the degradation of starch, but the phosphorolysis of starch may play an important role in water stress tolerance.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
88-997
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
176-997
 ID: GO:0071944 (portable match)
name: cell periphery
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
88-499,592-1001
1g012447m 463 ID: Q9SD76 (portable match)
name: Alpha-glucan phosphorylase 2, cytosolic
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-462
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
116-462
 ID: GO:0071944 (portable match)
name: cell periphery
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
17-462
1g005595m 689 ID: Q9SD76 (confident match)
name: Alpha-glucan phosphorylase 2, cytosolic
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-685
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
1-685
 no hit PDB ID: 1ygp chain A
(very confident match)
coverage over query:
1-683
1g007987m 582 ID: Q05758 (confident match)
name: Ketol-acid reductoisomerase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0059
name: IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
100-442
 ID: PF07991
score: 100.00 (hhsearch)
coverage over query:
108-287
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 3fr7 chain A
(very confident match)
coverage over query:
68-581
1g021356m 313 ID: Q05758 (portable match)
name: Ketol-acid reductoisomerase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0059
name: IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
106-312
 ID: PF07991
score: 99.98 (hhsearch)
coverage over query:
108-288
 ID: GO:0005507 (portable match)
name: copper ion binding
 PDB ID: 3fr7 chain A
(very confident match)
coverage over query:
69-312
1g021114m 317 ID: Q05758 (portable match)
name: Ketol-acid reductoisomerase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0059
name: IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
106-313
 ID: PF07991
score: 99.98 (hhsearch)
coverage over query:
108-288
 ID: GO:0005507 (portable match)
name: copper ion binding
 PDB ID: 3fr7 chain A
(very confident match)
coverage over query:
69-313
1g013877m 434 ID: Q05758 (portable match)
name: Ketol-acid reductoisomerase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0059
name: IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
101-432
 ID: PF07991
score: 100.00 (hhsearch)
coverage over query:
108-288
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 3fr7 chain A
(very confident match)
coverage over query:
68-432
1g007951m 583 ID: Q05758 (confident match)
name: Ketol-acid reductoisomerase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0059
name: IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
99-442
 ID: PF07991
score: 100.00 (hhsearch)
coverage over query:
108-287
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 3fr7 chain A
(very confident match)
coverage over query:
68-582
1g021401m 313 ID: Q05758 (portable match)
name: Ketol-acid reductoisomerase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0059
name: IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
106-312
 ID: PF07991
score: 99.98 (hhsearch)
coverage over query:
108-288
 ID: GO:0005507 (portable match)
name: copper ion binding
 PDB ID: 3fr7 chain A
(very confident match)
coverage over query:
69-312
1g014834m 417 ID: Q05758 (portable match)
name: Ketol-acid reductoisomerase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0059
name: IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
106-416
 ID: PF07991
score: 100.00 (hhsearch)
coverage over query:
108-287
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 3fr7 chain A
(very confident match)
coverage over query:
68-413
1g012479m 462 ID: Q05758 (portable match)
name: Ketol-acid reductoisomerase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0059
name: IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
106-443
 ID: PF07991
score: 100.00 (hhsearch)
coverage over query:
108-287
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 3fr7 chain A
(very confident match)
coverage over query:
68-462
1g023490m 281 ID: Q05758 (portable match)
name: Ketol-acid reductoisomerase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0059
name: IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
106-280
 ID: PF07991
score: 100.00 (hhsearch)
coverage over query:
108-280
 ID: GO:0005507 (portable match)
name: copper ion binding
 PDB ID: 3fr7 chain A
(very confident match)
coverage over query:
69-281
1g014863m 417 ID: Q05758 (portable match)
name: Ketol-acid reductoisomerase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0059
name: IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
101-416
 ID: PF07991
score: 100.00 (hhsearch)
coverage over query:
108-287
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 3fr7 chain A
(very confident match)
coverage over query:
68-412
1g021218m 316 ID: Q05758 (portable match)
name: Ketol-acid reductoisomerase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0059
name: IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
106-314
 ID: PF07991
score: 100.00 (hhsearch)
coverage over query:
108-288
 ID: GO:0005507 (portable match)
name: copper ion binding
 PDB ID: 3fr7 chain A
(very confident match)
coverage over query:
68-314
1g039882m 1142 ID: Q10490 (portable match)
name: Putative leucine--tRNA ligase, cytoplasmic
def:
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0060
name: IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
48-1005
 ID: PF00133
score: 100.00 (hhsearch)
coverage over query:
75-813
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2wfd chain A
(very confident match)
coverage over query:
319-570
1g000999m 1193 ID: Q21926 (portable match)
name: Isoleucine--tRNA ligase, cytoplasmic
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0060
name: IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
9-1037
 ID: PF00133
score: 100.00 (hhsearch)
coverage over query:
18-685
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1wkb chain A
(very confident match)
coverage over query:
8-271,291-291,313-830
1g008100m 577 ID: B7H798 (portable match)
name: Leucine--tRNA ligase
def:
source: Bacillus cereus (strain B4264) (taxid: 405532)
 ID: COG0060
name: IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
59-576
 ID: PF00133
score: 100.00 (hhsearch)
coverage over query:
72-577
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 2ajg chain A
(very confident match)
coverage over query:
288-485
1g003799m 794 no hit ID: COG0060
name: IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
105-791
 ID: PF00133
score: 100.00 (hhsearch)
coverage over query:
129-572
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1ffy chain A
(very confident match)
coverage over query:
105-369,395-790
1g005766m 678 no hit ID: COG0060
name: IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-668
 ID: PF00133
score: 100.00 (hhsearch)
coverage over query:
1-333
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1ffy chain A
(very confident match)
coverage over query:
1-130,156-668
1g005759m 678 no hit ID: COG0060
name: IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-668
 ID: PF00133
score: 100.00 (hhsearch)
coverage over query:
1-333
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1ffy chain A
(very confident match)
coverage over query:
1-130,156-668
1g002784m 881 no hit ID: COG0060
name: IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
104-871
 ID: PF00133
score: 100.00 (hhsearch)
coverage over query:
129-536
 no hit PDB ID: 1wny chain A
(very confident match)
coverage over query:
274-330,355-492
1g021432m 312 ID: Q6EQG2 (portable match)
name: Probable NADH kinase
def: Key source of the cellular reductant NADPH which is an important antioxidant factor.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0061
name: nadF NAD kinase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
13-310
 ID: PF01513
score: 100.00 (hhsearch)
coverage over query:
13-306
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2an1 chain A
(very confident match)
coverage over query:
10-107,126-312
1g002725m 887 ID: Q9C5W3 (portable match)
name: NAD kinase 2, chloroplastic
def: Involved in chlorophyll synthesis and chloroplast protection against oxidative damage.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0061
name: nadF NAD kinase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
580-880
 ID: PF01513
score: 100.00 (hhsearch)
coverage over query:
581-860
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3pfn chain A
(very confident match)
coverage over query:
555-881
1g002733m 887 ID: Q9C5W3 (portable match)
name: NAD kinase 2, chloroplastic
def: Involved in chlorophyll synthesis and chloroplast protection against oxidative damage.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0061
name: nadF NAD kinase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
580-880
 ID: PF01513
score: 100.00 (hhsearch)
coverage over query:
581-860
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3pfn chain A
(very confident match)
coverage over query:
555-881
1g001898m 998 ID: Q9C5W3 (portable match)
name: NAD kinase 2, chloroplastic
def: Involved in chlorophyll synthesis and chloroplast protection against oxidative damage.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0061
name: nadF NAD kinase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
691-991
 ID: PF01513
score: 100.00 (hhsearch)
coverage over query:
692-971
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3pfn chain A
(very confident match)
coverage over query:
671-990
1g001899m 998 ID: Q9C5W3 (portable match)
name: NAD kinase 2, chloroplastic
def: Involved in chlorophyll synthesis and chloroplast protection against oxidative damage.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0061
name: nadF NAD kinase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
691-991
 ID: PF01513
score: 100.00 (hhsearch)
coverage over query:
692-971
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3pfn chain A
(very confident match)
coverage over query:
671-990
1g008048m 579 ID: Q5JK52 (portable match)
name: Probable NAD kinase 1
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0061
name: nadF NAD kinase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
265-566
 ID: PF01513
score: 100.00 (hhsearch)
coverage over query:
266-546
 ID: GO:0042736 (confident match)
name: NADH kinase activity
 PDB ID: 2an1 chain A
(very confident match)
coverage over query:
264-567
1g009486m 533 ID: Q5JK52 (confident match)
name: Probable NAD kinase 1
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0061
name: nadF NAD kinase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
219-520
 ID: PF01513
score: 100.00 (hhsearch)
coverage over query:
220-500
 ID: GO:0042736 (confident match)
name: NADH kinase activity
 PDB ID: 2an1 chain A
(very confident match)
coverage over query:
217-521
1g002281m 943 ID: Q9C5W3 (portable match)
name: NAD kinase 2, chloroplastic
def: Involved in chlorophyll synthesis and chloroplast protection against oxidative damage.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0061
name: nadF NAD kinase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
691-933
 ID: PF01513
score: 100.00 (hhsearch)
coverage over query:
692-933
 no hit PDB ID: 3pfn chain A
(very confident match)
coverage over query:
671-934
1g002584m 904 ID: Q9C5W3 (portable match)
name: NAD kinase 2, chloroplastic
def: Involved in chlorophyll synthesis and chloroplast protection against oxidative damage.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0061
name: nadF NAD kinase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
691-902
 ID: PF01513
score: 100.00 (hhsearch)
coverage over query:
692-901
 no hit PDB ID: 3afo chain A
(very confident match)
coverage over query:
661-898
1g002705m 890 ID: Q9C5W3 (portable match)
name: NAD kinase 2, chloroplastic
def: Involved in chlorophyll synthesis and chloroplast protection against oxidative damage.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0061
name: nadF NAD kinase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
691-890
 ID: PF01513
score: 100.00 (hhsearch)
coverage over query:
692-890
 no hit PDB ID: 3afo chain A
(very confident match)
coverage over query:
661-874
1g002791m 881 ID: Q9C5W3 (portable match)
name: NAD kinase 2, chloroplastic
def: Involved in chlorophyll synthesis and chloroplast protection against oxidative damage.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0061
name: nadF NAD kinase [Coenzyme metabolism]
score:99.94 (hhsearch)
coverage over query:
691-879
 ID: PF01513
score: 99.94 (hhsearch)
coverage over query:
692-879
 no hit PDB ID: 3afo chain A
(very confident match)
coverage over query:
661-873
1g016016m 396 ID: Q94AF2 (portable match)
name: ATP-dependent (S)-NAD(P)H-hydrate dehydratase
def: Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ATP, which is converted to ADP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0063
name: Predicted sugar kinase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
63-331
 ID: PF01256
score: 100.00 (hhsearch)
coverage over query:
88-331
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3bgk chain A
(very confident match)
coverage over query:
62-142,163-330
1g017174m 376 ID: Q94AF2 (confident match)
name: ATP-dependent (S)-NAD(P)H-hydrate dehydratase
def: Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ATP, which is converted to ADP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0063
name: Predicted sugar kinase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
62-372
 ID: PF01256
score: 100.00 (hhsearch)
coverage over query:
88-367
 ID: GO:0048573 (portable match)
name: photoperiodism, flowering
 PDB ID: 3bgk chain A
(very confident match)
coverage over query:
62-142,163-373
1g017155m 376 ID: Q94AF2 (confident match)
name: ATP-dependent (S)-NAD(P)H-hydrate dehydratase
def: Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ATP, which is converted to ADP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0063
name: Predicted sugar kinase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
62-372
 ID: PF01256
score: 100.00 (hhsearch)
coverage over query:
88-367
 ID: GO:0048573 (portable match)
name: photoperiodism, flowering
 PDB ID: 3bgk chain A
(very confident match)
coverage over query:
62-142,163-373
1g043020m 564 ID: Q2R2Z0 (confident match)
name: Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial
def: Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0064
name: GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
70-562
 ID: PF02934
score: 100.00 (hhsearch)
coverage over query:
74-377
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3h0l chain B
(very confident match)
coverage over query:
70-212,224-562
1g019862m 334 ID: Q94AR8 (portable match)
name: 3-isopropylmalate dehydratase
def: Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0065
name: LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
67-334
 ID: PF00330
score: 100.00 (hhsearch)
coverage over query:
70-334
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1c96 chain A
(very confident match)
coverage over query:
66-163,175-334
1g010403m 511 ID: Q94AR8 (confident match)
name: 3-isopropylmalate dehydratase
def: Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0065
name: LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
67-510
 ID: PF00330
score: 100.00 (hhsearch)
coverage over query:
70-501
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1l5j chain A
(very confident match)
coverage over query:
52-163,175-510
1g012009m 473 ID: Q94AR8 (confident match)
name: 3-isopropylmalate dehydratase
def: Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0065
name: LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
68-473
 ID: PF00330
score: 100.00 (hhsearch)
coverage over query:
70-473
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1c96 chain A
(very confident match)
coverage over query:
66-163,175-473
1g013449m 443 ID: Q94AR8 (confident match)
name: 3-isopropylmalate dehydratase
def: Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0065
name: LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-442
 ID: PF00330
score: 100.00 (hhsearch)
coverage over query:
2-433
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1l5j chain A
(very confident match)
coverage over query:
1-95,107-442
1g013574m 440 ID: Q94AR8 (portable match)
name: 3-isopropylmalate dehydratase
def: Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0065
name: LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
67-423
 ID: PF00330
score: 100.00 (hhsearch)
coverage over query:
70-424
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1c96 chain A
(very confident match)
coverage over query:
66-163,175-423
1g025777m 248 no hit ID: COG0066
name: LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
65-242
 ID: PF00694
score: 99.97 (hhsearch)
coverage over query:
65-186
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2pkp chain A
(very confident match)
coverage over query:
68-244
1g024072m 273 no hit ID: COG0068
name: HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
34-271
 ID: PF01300
score: 100.00 (hhsearch)
coverage over query:
73-251
 ID: GO:0051051 (portable match)
name: negative regulation of transport
 PDB ID: 1jcu chain A
(very confident match)
coverage over query:
65-257
1g000266m 1760 ID: Q0JKD0 (portable match)
name: Glutamate synthase 1 [NADH], chloroplastic
def: Involved in glutamate biosynthesis and plays a major role in the primary ammonium ions assimilation in seedling roots. May be involved in the reutilization of glutamine in developing organs. Plays a role in the development of tillers.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0069
name: GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
837-1331
 ID: PF04898
score: 100.00 (hhsearch)
coverage over query:
590-881
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1ea0 chain A
(very confident match)
coverage over query:
115-544,555-1626
1g000265m 1760 ID: Q0JKD0 (portable match)
name: Glutamate synthase 1 [NADH], chloroplastic
def: Involved in glutamate biosynthesis and plays a major role in the primary ammonium ions assimilation in seedling roots. May be involved in the reutilization of glutamine in developing organs. Plays a role in the development of tillers.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0069
name: GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
837-1331
 ID: PF04898
score: 100.00 (hhsearch)
coverage over query:
590-881
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1ea0 chain A
(very confident match)
coverage over query:
115-544,555-1626
1g000461m 1482 ID: Q69RJ0 (confident match)
name: Ferredoxin-dependent glutamate synthase, chloroplastic
def: Involved in glutamate biosynthesis in leaf. Required for the reassimilation of ammonium ions generated during photorespiration.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0069
name: GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
803-1287
 ID: PF04898
score: 100.00 (hhsearch)
coverage over query:
552-847
 ID: GO:0009941 (confident match)
name: chloroplast envelope
 PDB ID: 1ea0 chain A
(very confident match)
coverage over query:
104-1013,1031-1481
1g004229m 766 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.80 (hhsearch)
coverage over query:
657-753
 ID: PF00011
score: 99.73 (hhsearch)
coverage over query:
662-753
 ID: GO:0005634 (portable match)
name: nucleus
 PDB ID: 3aab chain A
(very confident match)
coverage over query:
659-753
1g025484m 252 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.91 (hhsearch)
coverage over query:
142-251
 ID: PF00011
score: 99.83 (hhsearch)
coverage over query:
150-251
 ID: GO:0005730 (portable match)
name: nucleolus
 PDB ID: 3aab chain A
(confident match)
coverage over query:
142-251
1g043145m 134 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.96 (hhsearch)
coverage over query:
25-133
 ID: PF00011
score: 99.92 (hhsearch)
coverage over query:
31-133
 ID: GO:0005730 (portable match)
name: nucleolus
 PDB ID: 3aab chain A
(confident match)
coverage over query:
25-132
1g045199m 82 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:98.93 (hhsearch)
coverage over query:
34-71
 ID: PF00011
score: 99.06 (hhsearch)
coverage over query:
33-70
 ID: GO:0005730 (portable match)
name: nucleolus
 PDB ID: 3l1e chain A
(confident match)
coverage over query:
36-77
1g025769m 248 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.92 (hhsearch)
coverage over query:
141-248
 ID: PF00011
score: 99.85 (hhsearch)
coverage over query:
147-247
 ID: GO:0005730 (portable match)
name: nucleolus
 PDB ID: 3aab chain A
(confident match)
coverage over query:
113-129,140-247
1g026013m 244 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.49 (hhsearch)
coverage over query:
107-210
 ID: PF00011
score: 99.49 (hhsearch)
coverage over query:
124-210
 ID: GO:0005774 (portable match)
name: vacuolar membrane
 PDB ID: 1gme chain A
(confident match)
coverage over query:
120-210
1g023450m 282 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.46 (hhsearch)
coverage over query:
107-211
 ID: PF00011
score: 99.52 (hhsearch)
coverage over query:
124-213
 ID: GO:0005774 (portable match)
name: vacuolar membrane
 PDB ID: 1gme chain A
(confident match)
coverage over query:
120-210
1g032282m 144 ID: Q9FHQ3 (portable match)
name: 15.7 kDa heat shock protein, peroxisomal
def: Possesses chaperone activity.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.95 (hhsearch)
coverage over query:
25-141
 ID: PF00011
score: 99.92 (hhsearch)
coverage over query:
31-141
 ID: GO:0005782 (confident match)
name: peroxisomal matrix
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
26-142
1g044197m 202 ID: Q38806 (portable match)
name: 22.0 kDa heat shock protein
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.95 (hhsearch)
coverage over query:
71-184
 ID: PF00011
score: 99.92 (hhsearch)
coverage over query:
76-184
 ID: GO:0005783 (portable match)
name: endoplasmic reticulum
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
69-184
1g028798m 203 ID: Q38806 (portable match)
name: 22.0 kDa heat shock protein
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.95 (hhsearch)
coverage over query:
77-186
 ID: PF00011
score: 99.92 (hhsearch)
coverage over query:
82-186
 ID: GO:0005783 (confident match)
name: endoplasmic reticulum
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
77-186
1g046675m 186 ID: Q38806 (portable match)
name: 22.0 kDa heat shock protein
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.91 (hhsearch)
coverage over query:
70-168
 ID: PF00011
score: 99.88 (hhsearch)
coverage over query:
76-168
 ID: GO:0005783 (portable match)
name: endoplasmic reticulum
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
69-168
1g041072m 110 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.85 (hhsearch)
coverage over query:
35-110
 ID: PF00011
score: 99.74 (hhsearch)
coverage over query:
41-110
 ID: GO:0005783 (portable match)
name: endoplasmic reticulum
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
34-110
1g043469m 104 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.96 (hhsearch)
coverage over query:
3-104
 ID: PF00011
score: 99.93 (hhsearch)
coverage over query:
8-104
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3gla chain A
(very confident match)
coverage over query:
2-104
1g043940m 123 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.94 (hhsearch)
coverage over query:
1-104
 ID: PF00011
score: 99.94 (hhsearch)
coverage over query:
1-104
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
1-104
1g046909m 150 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.96 (hhsearch)
coverage over query:
20-131
 ID: PF00011
score: 99.93 (hhsearch)
coverage over query:
26-131
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
20-131
1g042820m 120 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.93 (hhsearch)
coverage over query:
1-101
 ID: PF00011
score: 99.92 (hhsearch)
coverage over query:
1-101
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
1-101
1g042976m 163 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.89 (hhsearch)
coverage over query:
10-109
 ID: PF00011
score: 99.86 (hhsearch)
coverage over query:
16-109
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3aab chain A
(very confident match)
coverage over query:
11-102
1g027048m 229 ID: P31170 (portable match)
name: 25.3 kDa heat shock protein, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.94 (hhsearch)
coverage over query:
116-228
 ID: PF00011
score: 99.90 (hhsearch)
coverage over query:
122-229
 ID: GO:0006950 (portable match)
name: response to stress
 PDB ID: 3aab chain A
(very confident match)
coverage over query:
83-101,115-220
1g033685m 113 ID: P04793 (portable match)
name: 17.5 kDa class I heat shock protein
def:
source: Glycine max (taxid: 3847)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.97 (hhsearch)
coverage over query:
4-112
 ID: PF00011
score: 99.95 (hhsearch)
coverage over query:
9-112
 ID: GO:0009408 (portable match)
name: response to heat
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
4-113
1g041378m 145 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.93 (hhsearch)
coverage over query:
44-143
 ID: PF00011
score: 99.87 (hhsearch)
coverage over query:
50-143
 ID: GO:0009408 (portable match)
name: response to heat
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
42-143
1g043288m 156 ID: P02519 (confident match)
name: 17.3 kDa class I heat shock protein
def:
source: Glycine max (taxid: 3847)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.96 (hhsearch)
coverage over query:
46-155
 ID: PF00011
score: 99.94 (hhsearch)
coverage over query:
52-155
 ID: GO:0009651 (confident match)
name: response to salt stress
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
1-156
1g031993m 149 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:98.03 (hhsearch)
coverage over query:
24-134
 ID: PF00011
score: 98.98 (hhsearch)
coverage over query:
28-137
 ID: GO:0009941 (portable match)
name: chloroplast envelope
 PDB ID: 1gme chain A
(confident match)
coverage over query:
20-134
1g037054m 508 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:98.51 (hhsearch)
coverage over query:
368-478
 ID: PF00011
score: 99.13 (hhsearch)
coverage over query:
372-485
 ID: GO:0009941 (confident match)
name: chloroplast envelope
 PDB ID: 2wj5 chain A
(confident match)
coverage over query:
369-430,441-477
1g031365m 161 ID: P05478 (confident match)
name: 18.5 kDa class I heat shock protein
def:
source: Glycine max (taxid: 3847)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.96 (hhsearch)
coverage over query:
51-160
 ID: PF00011
score: 99.94 (hhsearch)
coverage over query:
57-160
 ID: GO:0010286 (portable match)
name: heat acclimation
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
1-161
1g026695m 235 ID: Q9SSQ8 (portable match)
name: 26.5 kDa heat shock protein, mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.95 (hhsearch)
coverage over query:
128-235
 ID: PF00011
score: 99.91 (hhsearch)
coverage over query:
133-235
 ID: GO:0010286 (portable match)
name: heat acclimation
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
128-235
1g026451m 238 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.86 (hhsearch)
coverage over query:
23-114
 ID: PF00011
score: 99.81 (hhsearch)
coverage over query:
29-114
 ID: GO:0016020 (portable match)
name: membrane
 PDB ID: 3gla chain A
(very confident match)
coverage over query:
23-111
1g038468m 458 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:98.57 (hhsearch)
coverage over query:
367-435
 ID: PF00011
score: 98.25 (hhsearch)
coverage over query:
373-415
 ID: GO:0042538 (confident match)
name: hyperosmotic salinity response
 PDB ID: 3aab chain A
(portable match)
coverage over query:
367-431
1g028468m 208 ID: Q39818 (portable match)
name: Heat shock 22 kDa protein, mitochondrial
def:
source: Glycine max (taxid: 3847)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.91 (hhsearch)
coverage over query:
107-205
 ID: PF00011
score: 99.86 (hhsearch)
coverage over query:
112-205
 ID: GO:0042542 (portable match)
name: response to hydrogen peroxide
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
107-208
1g029160m 198 ID: Q9FIT9 (portable match)
name: 21.7 kDa class VI heat shock protein
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.94 (hhsearch)
coverage over query:
81-182
 ID: PF00011
score: 99.89 (hhsearch)
coverage over query:
87-185
 ID: GO:0042542 (portable match)
name: response to hydrogen peroxide
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
80-182
1g028228m 212 ID: Q9FIT9 (portable match)
name: 21.7 kDa class VI heat shock protein
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.94 (hhsearch)
coverage over query:
81-186
 ID: PF00011
score: 99.90 (hhsearch)
coverage over query:
87-187
 ID: GO:0042542 (portable match)
name: response to hydrogen peroxide
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
81-187
1g027026m 229 ID: P31170 (portable match)
name: 25.3 kDa heat shock protein, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.94 (hhsearch)
coverage over query:
116-228
 ID: PF00011
score: 99.89 (hhsearch)
coverage over query:
122-229
 ID: GO:0046686 (portable match)
name: response to cadmium ion
 PDB ID: 3aab chain A
(very confident match)
coverage over query:
83-101,115-220
1g044098m 201 ID: P46254 (portable match)
name: Heat shock 22 kDa protein, mitochondrial
def:
source: Pisum sativum (taxid: 3888)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.94 (hhsearch)
coverage over query:
93-200
 ID: PF00011
score: 99.89 (hhsearch)
coverage over query:
98-200
 ID: GO:0046686 (portable match)
name: response to cadmium ion
 PDB ID: 3aab chain A
(very confident match)
coverage over query:
77-190
1g028577m 207 ID: Q39818 (portable match)
name: Heat shock 22 kDa protein, mitochondrial
def:
source: Glycine max (taxid: 3847)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.92 (hhsearch)
coverage over query:
106-204
 ID: PF00011
score: 99.86 (hhsearch)
coverage over query:
111-204
 ID: GO:0046686 (portable match)
name: response to cadmium ion
 PDB ID: 3aab chain A
(very confident match)
coverage over query:
87-196
1g028542m 207 ID: Q39818 (portable match)
name: Heat shock 22 kDa protein, mitochondrial
def:
source: Glycine max (taxid: 3847)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.91 (hhsearch)
coverage over query:
106-204
 ID: PF00011
score: 99.86 (hhsearch)
coverage over query:
111-204
 ID: GO:0046686 (portable match)
name: response to cadmium ion
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
106-207
1g028463m 208 ID: Q39818 (portable match)
name: Heat shock 22 kDa protein, mitochondrial
def:
source: Glycine max (taxid: 3847)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.91 (hhsearch)
coverage over query:
107-205
 ID: PF00011
score: 99.86 (hhsearch)
coverage over query:
112-205
 ID: GO:0046686 (portable match)
name: response to cadmium ion
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
107-208
1g031515m 158 ID: O81822 (confident match)
name: 17.7 kDa class II heat shock protein
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.96 (hhsearch)
coverage over query:
45-156
 ID: PF00011
score: 99.93 (hhsearch)
coverage over query:
51-156
 ID: GO:0051082 (confident match)
name: unfolded protein binding
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
43-156
1g031533m 158 ID: P29830 (confident match)
name: 17.6 kDa class II heat shock protein
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.96 (hhsearch)
coverage over query:
45-156
 ID: PF00011
score: 99.92 (hhsearch)
coverage over query:
51-156
 ID: GO:0051082 (confident match)
name: unfolded protein binding
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
42-155
1g042495m 180 ID: Q38806 (portable match)
name: 22.0 kDa heat shock protein
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.96 (hhsearch)
coverage over query:
49-162
 ID: PF00011
score: 99.93 (hhsearch)
coverage over query:
54-162
 ID: GO:0051082 (portable match)
name: unfolded protein binding
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
15-162
1g031602m 156 ID: Q9SYG1 (portable match)
name: 17.4 kDa class III heat shock protein
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.96 (hhsearch)
coverage over query:
42-154
 ID: PF00011
score: 99.92 (hhsearch)
coverage over query:
48-154
 ID: GO:0051082 (portable match)
name: unfolded protein binding
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
41-154
1g028809m 203 ID: Q9FGM9 (portable match)
name: 23.5 kDa heat shock protein, mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.92 (hhsearch)
coverage over query:
102-200
 ID: PF00011
score: 99.87 (hhsearch)
coverage over query:
107-201
 ID: GO:0051259 (portable match)
name: protein oligomerization
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
102-203
1g043603m 114 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.92 (hhsearch)
coverage over query:
3-96
 ID: PF00011
score: 99.89 (hhsearch)
coverage over query:
8-96
 ID: GO:0051259 (portable match)
name: protein oligomerization
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
3-96
1g041271m 310 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.90 (hhsearch)
coverage over query:
131-246
 ID: PF00011
score: 99.87 (hhsearch)
coverage over query:
137-246
 ID: GO:0051259 (portable match)
name: protein oligomerization
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
129-246
1g046366m 128 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.87 (hhsearch)
coverage over query:
47-128
 ID: PF00011
score: 99.82 (hhsearch)
coverage over query:
51-128
 ID: GO:0051259 (portable match)
name: protein oligomerization
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
52-128
1g036405m 98 ID: P02519 (portable match)
name: 17.3 kDa class I heat shock protein
def:
source: Glycine max (taxid: 3847)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.74 (hhsearch)
coverage over query:
35-98
 ID: PF00011
score: 99.37 (hhsearch)
coverage over query:
41-98
 ID: GO:0051260 (portable match)
name: protein homooligomerization
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
1-98
1g031218m 163 ID: P05478 (confident match)
name: 18.5 kDa class I heat shock protein
def:
source: Glycine max (taxid: 3847)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.96 (hhsearch)
coverage over query:
52-162
 ID: PF00011
score: 99.93 (hhsearch)
coverage over query:
58-162
 ID: GO:0051260 (confident match)
name: protein homooligomerization
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
1-163
1g037294m 161 ID: P05478 (portable match)
name: 18.5 kDa class I heat shock protein
def:
source: Glycine max (taxid: 3847)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.96 (hhsearch)
coverage over query:
51-160
 ID: PF00011
score: 99.94 (hhsearch)
coverage over query:
57-160
 ID: GO:0051260 (confident match)
name: protein homooligomerization
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
1-161
1g031266m 162 ID: P05478 (confident match)
name: 18.5 kDa class I heat shock protein
def:
source: Glycine max (taxid: 3847)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.96 (hhsearch)
coverage over query:
51-161
 ID: PF00011
score: 99.94 (hhsearch)
coverage over query:
57-161
 ID: GO:0051260 (confident match)
name: protein homooligomerization
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
1-162
1g039719m 186 ID: Q38806 (portable match)
name: 22.0 kDa heat shock protein
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.93 (hhsearch)
coverage over query:
70-168
 ID: PF00011
score: 99.90 (hhsearch)
coverage over query:
76-168
 ID: GO:0051260 (portable match)
name: protein homooligomerization
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
69-169
1g041192m 161 ID: Q38806 (portable match)
name: 22.0 kDa heat shock protein
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.96 (hhsearch)
coverage over query:
29-143
 ID: PF00011
score: 99.94 (hhsearch)
coverage over query:
35-143
 ID: GO:0051260 (portable match)
name: protein homooligomerization
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
27-143
1g047819m 114 ID: Q84Q77 (portable match)
name: 17.9 kDa class I heat shock protein
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.97 (hhsearch)
coverage over query:
2-112
 ID: PF00011
score: 99.95 (hhsearch)
coverage over query:
7-112
 ID: GO:0051260 (portable match)
name: protein homooligomerization
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
2-113
1g031640m 156 ID: Q84Q77 (portable match)
name: 17.9 kDa class I heat shock protein
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.95 (hhsearch)
coverage over query:
44-154
 ID: PF00011
score: 99.93 (hhsearch)
coverage over query:
49-154
 ID: GO:0051260 (portable match)
name: protein homooligomerization
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
1-155
1g031937m 150 ID: Q9LNW0 (confident match)
name: 17.8 kDa class I heat shock protein
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.96 (hhsearch)
coverage over query:
39-149
 ID: PF00011
score: 99.94 (hhsearch)
coverage over query:
45-149
 ID: GO:0051260 (confident match)
name: protein homooligomerization
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
1-150
1g039913m 128 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.93 (hhsearch)
coverage over query:
6-102
 ID: PF00011
score: 99.91 (hhsearch)
coverage over query:
12-102
 ID: GO:0051260 (portable match)
name: protein homooligomerization
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
5-103
1g037002m 177 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.95 (hhsearch)
coverage over query:
47-159
 ID: PF00011
score: 99.93 (hhsearch)
coverage over query:
51-159
 ID: GO:0051260 (portable match)
name: protein homooligomerization
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
19-159
1g044552m 162 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.94 (hhsearch)
coverage over query:
18-117
 ID: PF00011
score: 99.91 (hhsearch)
coverage over query:
23-118
 ID: GO:0051260 (portable match)
name: protein homooligomerization
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
18-116
1g039847m 172 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.95 (hhsearch)
coverage over query:
30-149
 ID: PF00011
score: 99.91 (hhsearch)
coverage over query:
35-150
 ID: GO:0051260 (portable match)
name: protein homooligomerization
 PDB ID: 1gme chain A
(very confident match)
coverage over query:
25-150
1g040821m 220 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.92 (hhsearch)
coverage over query:
91-198
 ID: PF00011
score: 99.87 (hhsearch)
coverage over query:
96-199
 no hit PDB ID: 1gme chain A
(very confident match)
coverage over query:
90-199
1g021718m 308 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.83 (hhsearch)
coverage over query:
17-106
 ID: PF00011
score: 99.81 (hhsearch)
coverage over query:
23-114
 no hit PDB ID: 3aab chain A
(confident match)
coverage over query:
17-103
1g032405m 141 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.95 (hhsearch)
coverage over query:
12-136
 ID: PF00011
score: 99.91 (hhsearch)
coverage over query:
35-137
 no hit PDB ID: 3gla chain A
(confident match)
coverage over query:
30-136
1g039702m 397 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.85 (hhsearch)
coverage over query:
293-396
 ID: PF00011
score: 99.79 (hhsearch)
coverage over query:
298-397
 no hit PDB ID: 3aab chain A
(confident match)
coverage over query:
294-396
1g027900m 217 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.83 (hhsearch)
coverage over query:
121-215
 ID: PF00011
score: 99.63 (hhsearch)
coverage over query:
126-215
 no hit PDB ID: 3aab chain A
(confident match)
coverage over query:
86-104,119-166,185-215
1g035678m 231 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:96.51 (hhsearch)
coverage over query:
101-193
 ID: PF00011
score: 97.64 (hhsearch)
coverage over query:
6-86
 no hit PDB ID: 3aab chain A
(confident match)
coverage over query:
129-191
1g019529m 339 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.86 (hhsearch)
coverage over query:
24-116
 ID: PF00011
score: 99.80 (hhsearch)
coverage over query:
29-117
 no hit PDB ID: 3aab chain A
(confident match)
coverage over query:
23-116
1g032436m 141 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.95 (hhsearch)
coverage over query:
12-136
 ID: PF00011
score: 99.91 (hhsearch)
coverage over query:
35-137
 no hit PDB ID: 3gla chain A
(confident match)
coverage over query:
30-136
1g032427m 141 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.95 (hhsearch)
coverage over query:
12-136
 ID: PF00011
score: 99.91 (hhsearch)
coverage over query:
35-137
 no hit PDB ID: 3gla chain A
(confident match)
coverage over query:
30-136
1g046062m 468 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.92 (hhsearch)
coverage over query:
30-141
 ID: PF00011
score: 99.88 (hhsearch)
coverage over query:
36-142
 no hit PDB ID: 3q9p chain A
(confident match)
coverage over query:
37-129
1g035730m 309 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.85 (hhsearch)
coverage over query:
18-121
 ID: PF00011
score: 99.81 (hhsearch)
coverage over query:
24-121
 no hit PDB ID: 1gme chain A
(very confident match)
coverage over query:
17-122
1g016705m 384 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.91 (hhsearch)
coverage over query:
9-138
 ID: PF00011
score: 99.85 (hhsearch)
coverage over query:
15-138
 no hit PDB ID: 1gme chain A
(very confident match)
coverage over query:
9-62,84-138
1g012818m 456 ID: Q0WNR6 (portable match)
name: AT-rich interactive domain-containing protein 5
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.70 (hhsearch)
coverage over query:
351-442
 ID: PF01388
score: 99.91 (hhsearch)
coverage over query:
146-234
 no hit PDB ID: 2kk0 chain A
(very confident match)
coverage over query:
129-238
1g013477m 442 ID: Q0WNR6 (portable match)
name: AT-rich interactive domain-containing protein 5
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.70 (hhsearch)
coverage over query:
351-441
 ID: PF01388
score: 99.91 (hhsearch)
coverage over query:
146-234
 no hit PDB ID: 2kk0 chain A
(very confident match)
coverage over query:
130-238
1g012780m 456 ID: Q0WNR6 (portable match)
name: AT-rich interactive domain-containing protein 5
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.70 (hhsearch)
coverage over query:
351-442
 ID: PF01388
score: 99.91 (hhsearch)
coverage over query:
146-234
 no hit PDB ID: 2kk0 chain A
(very confident match)
coverage over query:
129-238
1g009744m 527 ID: Q940Y3 (portable match)
name: AT-rich interactive domain-containing protein 3
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.80 (hhsearch)
coverage over query:
436-526
 ID: PF01388
score: 99.90 (hhsearch)
coverage over query:
232-320
 no hit PDB ID: 2kk0 chain A
(very confident match)
coverage over query:
211-326
1g009739m 527 ID: Q940Y3 (portable match)
name: AT-rich interactive domain-containing protein 3
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.80 (hhsearch)
coverage over query:
436-526
 ID: PF01388
score: 99.90 (hhsearch)
coverage over query:
232-320
 no hit PDB ID: 2kk0 chain A
(very confident match)
coverage over query:
211-326
1g009726m 527 ID: Q940Y3 (portable match)
name: AT-rich interactive domain-containing protein 3
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.80 (hhsearch)
coverage over query:
436-526
 ID: PF01388
score: 99.90 (hhsearch)
coverage over query:
232-320
 no hit PDB ID: 2kk0 chain A
(very confident match)
coverage over query:
211-326
1g004663m 738 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.60 (hhsearch)
coverage over query:
646-736
 ID: PF01388
score: 99.90 (hhsearch)
coverage over query:
437-525
 no hit PDB ID: 2kk0 chain A
(confident match)
coverage over query:
422-533
1g032235m 144 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:98.07 (hhsearch)
coverage over query:
17-96
 ID: PF04969
score: 99.78 (hhsearch)
coverage over query:
19-93
 ID: GO:0005737 (portable match)
name: cytoplasm
 PDB ID: 2rh0 chain A
(very confident match)
coverage over query:
6-133
1g032929m 130 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:98.30 (hhsearch)
coverage over query:
17-96
 ID: PF04969
score: 99.79 (hhsearch)
coverage over query:
19-93
 ID: GO:0005737 (portable match)
name: cytoplasm
 PDB ID: 2rh0 chain A
(very confident match)
coverage over query:
6-130
1g046801m 272 ID: Q9LV09 (portable match)
name: Protein BOBBER 1
def: Small heat shock protein required for the establishment of auxin gradients and for patterning of the apical domain of the embryo. Involved in the specification of the cotyledon primordia. Also required for normal inflorescence and floral meristem function, normal developmental patterning and thermotolerance. Acts as a molecular chaperone.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:97.37 (hhsearch)
coverage over query:
150-231
 ID: PF04969
score: 99.66 (hhsearch)
coverage over query:
153-228
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3qor chain A
(very confident match)
coverage over query:
139-255
1g007872m 586 ID: Q9SGE9 (confident match)
name: Probable phenylalanine--tRNA ligase beta subunit
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0072
name: PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
60-584
 ID: PF01409
score: 99.96 (hhsearch)
coverage over query:
391-584
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3l4g chain B
(very confident match)
coverage over query:
1-584
1g007710m 592 ID: Q9SGE9 (confident match)
name: Probable phenylalanine--tRNA ligase beta subunit
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0072
name: PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
60-591
 ID: PF01409
score: 99.96 (hhsearch)
coverage over query:
391-591
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3l4g chain B
(very confident match)
coverage over query:
1-592
1g007714m 592 ID: Q9SGE9 (confident match)
name: Probable phenylalanine--tRNA ligase beta subunit
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0072
name: PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
60-591
 ID: PF01409
score: 99.96 (hhsearch)
coverage over query:
391-591
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3l4g chain B
(very confident match)
coverage over query:
1-592
1g007706m 592 ID: Q9SGE9 (confident match)
name: Probable phenylalanine--tRNA ligase beta subunit
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0072
name: PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
60-591
 ID: PF01409
score: 99.96 (hhsearch)
coverage over query:
391-591
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3l4g chain B
(very confident match)
coverage over query:
1-592
1g014218m 428 ID: Q94K73 (confident match)
name: Phenylalanine--tRNA ligase, chloroplastic/mitochondrial
def: Catalyzes direct attachment of p-Tyr (Tyr) to tRNAPhe. Permits also, with a lower efficiency, the attachment of m-Tyr to tRNAPhe, thereby opening the way for delivery of the misacylated tRNA to the ribosome and incorporation of ROS-damaged amino acid into proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0072
name: PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
95-428
 ID: PF01409
score: 100.00 (hhsearch)
coverage over query:
87-325
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3cmq chain A
(very confident match)
coverage over query:
55-428
1g009703m 528 ID: Q9SGE9 (confident match)
name: Probable phenylalanine--tRNA ligase beta subunit
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0072
name: PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
60-527
 ID: PF03483
score: 99.86 (hhsearch)
coverage over query:
119-281
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3l4g chain B
(very confident match)
coverage over query:
1-522
1g015335m 408 no hit ID: COG0073
name: ARC1 EMAP domain [General function prediction only]
score:99.92 (hhsearch)
coverage over query:
241-349
 ID: PF01588
score: 99.93 (hhsearch)
coverage over query:
253-348
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1fl0 chain A
(very confident match)
coverage over query:
247-408
1g024343m 269 no hit ID: COG0073
name: ARC1 EMAP domain [General function prediction only]
score:99.95 (hhsearch)
coverage over query:
89-203
 ID: PF01588
score: 99.95 (hhsearch)
coverage over query:
107-202
 ID: GO:0009507 (portable match)
name: chloroplast
 PDB ID: 1mkh chain A
(very confident match)
coverage over query:
95-203
1g024253m 270 no hit ID: COG0073
name: ARC1 EMAP domain [General function prediction only]
score:99.95 (hhsearch)
coverage over query:
93-204
 ID: PF01588
score: 99.95 (hhsearch)
coverage over query:
108-203
 ID: GO:0009507 (portable match)
name: chloroplast
 PDB ID: 1mkh chain A
(very confident match)
coverage over query:
96-204
1g030220m 181 ID: P80865 (portable match)
name: Succinyl-CoA ligase [ADP-forming] subunit alpha
def:
source: Bacillus subtilis (strain 168) (taxid: 224308)
 ID: COG0074
name: SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
score:99.94 (hhsearch)
coverage over query:
51-166
 ID: PF01113
score: 99.86 (hhsearch)
coverage over query:
59-172
 ID: GO:0006104 (portable match)
name: succinyl-CoA metabolic process
 PDB ID: 2nu8 chain A
(very confident match)
coverage over query:
53-167
1g030169m 182 ID: Q9WUM5 (portable match)
name: Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
def: Catalyzes the ATP- or GTP-dependent ligation of succinate and CoA to form succinyl-CoA. The nature of the beta subunit determines the nucleotide specificity.
source: Mus musculus (taxid: 10090)
 ID: COG0074
name: SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
score:99.96 (hhsearch)
coverage over query:
51-166
 ID: PF01113
score: 99.85 (hhsearch)
coverage over query:
59-173
 ID: GO:0006104 (portable match)
name: succinyl-CoA metabolic process
 PDB ID: 2nu8 chain A
(very confident match)
coverage over query:
53-168
1g020101m 331 ID: Q6ZL94 (confident match)
name: Probable succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0074
name: SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
36-327
 ID: PF13607
score: 100.00 (hhsearch)
coverage over query:
180-322
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 2nu8 chain A
(very confident match)
coverage over query:
37-324
1g019500m 340 ID: Q8LAD2 (confident match)
name: Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0074
name: SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
36-336
 ID: PF13607
score: 100.00 (hhsearch)
coverage over query:
180-331
 ID: GO:0005507 (confident match)
name: copper ion binding
 PDB ID: 2nu8 chain A
(very confident match)
coverage over query:
37-333
1g017726m 367 ID: Q56YA5 (confident match)
name: Serine--glyoxylate aminotransferase
def: Photorespiratory enzyme that catalyzes transamination reactions with multiple substrates.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0075
name: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
10-361
 ID: PF00266
score: 100.00 (hhsearch)
coverage over query:
10-361
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1vjo chain A
(very confident match)
coverage over query:
8-365
1g015729m 401 ID: Q56YA5 (confident match)
name: Serine--glyoxylate aminotransferase
def: Photorespiratory enzyme that catalyzes transamination reactions with multiple substrates.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0075
name: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
10-391
 ID: PF00266
score: 100.00 (hhsearch)
coverage over query:
10-362
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1vjo chain A
(very confident match)
coverage over query:
9-370
1g010125m 517 ID: P54771 (portable match)
name: Tyrosine/DOPA decarboxylase 5
def: May play an important role in providing precursors for alkaloid synthesis in the roots and germinating seedlings.
source: Papaver somniferum (taxid: 3469)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
37-512
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
55-429
 ID: GO:0004058 (confident match)
name: aromatic-L-amino-acid decarboxylase activity
 PDB ID: 1js3 chain A
(very confident match)
coverage over query:
21-431,454-514
1g048643m 506 ID: P54771 (portable match)
name: Tyrosine/DOPA decarboxylase 5
def: May play an important role in providing precursors for alkaloid synthesis in the roots and germinating seedlings.
source: Papaver somniferum (taxid: 3469)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
36-498
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
54-422
 ID: GO:0004058 (confident match)
name: aromatic-L-amino-acid decarboxylase activity
 PDB ID: 1js3 chain A
(very confident match)
coverage over query:
20-424,441-501
1g038818m 486 ID: Q06086 (portable match)
name: Tyrosine decarboxylase 2
def:
source: Petroselinum crispum (taxid: 4043)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
16-481
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
35-409
 ID: GO:0004058 (confident match)
name: aromatic-L-amino-acid decarboxylase activity
 PDB ID: 1js3 chain A
(very confident match)
coverage over query:
1-411,425-484
1g010842m 499 ID: Q7XHL3 (portable match)
name: Tyrosine decarboxylase 1
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
33-493
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
51-425
 ID: GO:0004058 (confident match)
name: aromatic-L-amino-acid decarboxylase activity
 PDB ID: 1js3 chain A
(very confident match)
coverage over query:
17-496
1g013675m 438 ID: Q9C509 (portable match)
name: Sphingosine-1-phosphate lyase
def: Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Elevates stress-induced ceramide production and apoptosis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
97-436
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
97-436
 ID: GO:0005783 (confident match)
name: endoplasmic reticulum
 PDB ID: 3mc6 chain A
(very confident match)
coverage over query:
69-436
1g011842m 476 ID: P54772 (portable match)
name: Histidine decarboxylase
def:
source: Solanum lycopersicum (taxid: 4081)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
72-406
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
72-404
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3f9t chain A
(very confident match)
coverage over query:
73-448
1g011871m 476 ID: P54772 (portable match)
name: Histidine decarboxylase
def:
source: Solanum lycopersicum (taxid: 4081)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
72-406
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
72-404
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3f9t chain A
(very confident match)
coverage over query:
73-448
1g010897m 498 ID: Q9LSH2 (confident match)
name: Glutamate decarboxylase 5
def: Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
31-409
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
20-381
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3hbx chain A
(very confident match)
coverage over query:
1-498
1g014163m 429 ID: Q9LSH2 (confident match)
name: Glutamate decarboxylase 5
def: Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
31-409
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
20-381
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3hbx chain A
(very confident match)
coverage over query:
1-426
1g011057m 494 ID: Q9ZPS3 (confident match)
name: Glutamate decarboxylase 4
def: Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
31-408
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
20-381
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3hbx chain A
(very confident match)
coverage over query:
1-494
1g017569m 369 ID: Q9ZPS3 (portable match)
name: Glutamate decarboxylase 4
def: Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
30-363
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
24-363
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3hbx chain A
(very confident match)
coverage over query:
1-338
1g018437m 356 ID: Q9ZPS3 (portable match)
name: Glutamate decarboxylase 4
def: Catalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
29-355
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
30-355
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3hbx chain A
(very confident match)
coverage over query:
1-355
1g046506m 310 no hit ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-301
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
1-223
 ID: GO:0019438 (portable match)
name: aromatic compound biosynthetic process
 PDB ID: 1js3 chain A
(very confident match)
coverage over query:
1-225,247-306
1g048438m 239 no hit ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
7-238
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
1-172
 ID: GO:0019438 (portable match)
name: aromatic compound biosynthetic process
 PDB ID: 1js3 chain A
(very confident match)
coverage over query:
1-174,197-238
1g009181m 541 ID: Q52RG7 (confident match)
name: Sphingosine-1-phosphate lyase
def: Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Elevates stress-induced ceramide production and apoptosis.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
96-474
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
97-449
 ID: GO:0030149 (confident match)
name: sphingolipid catabolic process
 PDB ID: 3mc6 chain A
(very confident match)
coverage over query:
69-541
1g036996m 214 no hit ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:99.94 (hhsearch)
coverage over query:
36-214
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
55-214
 ID: GO:0050896 (portable match)
name: response to stimulus
 PDB ID: 3k40 chain A
(very confident match)
coverage over query:
21-213
1g041549m 218 no hit ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:99.96 (hhsearch)
coverage over query:
2-207
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
2-148
 ID: GO:1901564 (portable match)
name: organonitrogen compound metabolic process
 PDB ID: 3k40 chain A
(very confident match)
coverage over query:
2-205
1g037144m 502 ID: Q7XHL3 (portable match)
name: Tyrosine decarboxylase 1
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
19-497
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
38-415
 ID: GO:1990055 (confident match)
name: phenylacetaldehyde synthase activity
 PDB ID: 1js3 chain A
(very confident match)
coverage over query:
4-417,445-501
1g041829m 486 ID: Q7XHL3 (confident match)
name: Tyrosine decarboxylase 1
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
16-479
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
35-412
 ID: GO:1990055 (confident match)
name: phenylacetaldehyde synthase activity
 PDB ID: 1js3 chain A
(very confident match)
coverage over query:
1-482
1g048019m 355 ID: Q8RY79 (portable match)
name: Tyrosine decarboxylase 1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
36-352
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
55-353
 ID: GO:1990055 (portable match)
name: phenylacetaldehyde synthase activity
 PDB ID: 1js3 chain A
(very confident match)
coverage over query:
21-352
1g023305m 284 ID: Q9SA96 (portable match)
name: Arogenate dehydratase/prephenate dehydratase 1, chloroplastic
def: Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0077
name: PheA Prephenate dehydratase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-282
 ID: PF00800
score: 100.00 (hhsearch)
coverage over query:
1-176
 ID: GO:0047769 (confident match)
name: arogenate dehydratase activity
 PDB ID: 2qmw chain A
(very confident match)
coverage over query:
1-226,241-279
1g019548m 339 ID: Q9SA96 (portable match)
name: Arogenate dehydratase/prephenate dehydratase 1, chloroplastic
def: Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0077
name: PheA Prephenate dehydratase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
97-333
 ID: PF00800
score: 100.00 (hhsearch)
coverage over query:
100-276
 ID: GO:0047769 (confident match)
name: arogenate dehydratase activity
 PDB ID: 2qmw chain A
(very confident match)
coverage over query:
96-334
1g018090m 361 ID: Q9SA96 (portable match)
name: Arogenate dehydratase/prephenate dehydratase 1, chloroplastic
def: Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0077
name: PheA Prephenate dehydratase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
119-352
 ID: PF00800
score: 100.00 (hhsearch)
coverage over query:
122-298
 ID: GO:0047769 (confident match)
name: arogenate dehydratase activity
 PDB ID: 2qmw chain A
(very confident match)
coverage over query:
119-352
1g016702m 384 ID: Q9SA96 (portable match)
name: Arogenate dehydratase/prephenate dehydratase 1, chloroplastic
def: Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0077
name: PheA Prephenate dehydratase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
97-382
 ID: PF00800
score: 100.00 (hhsearch)
coverage over query:
100-276
 ID: GO:0047769 (confident match)
name: arogenate dehydratase activity
 PDB ID: 2qmw chain A
(very confident match)
coverage over query:
96-326,341-379
1g015945m 398 ID: Q9SA96 (portable match)
name: Arogenate dehydratase/prephenate dehydratase 1, chloroplastic
def: Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0077
name: PheA Prephenate dehydratase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
111-396
 ID: PF00800
score: 100.00 (hhsearch)
coverage over query:
114-290
 ID: GO:0047769 (confident match)
name: arogenate dehydratase activity
 PDB ID: 2qmw chain A
(very confident match)
coverage over query:
110-340,355-393
1g015464m 406 ID: Q9SA96 (portable match)
name: Arogenate dehydratase/prephenate dehydratase 1, chloroplastic
def: Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0077
name: PheA Prephenate dehydratase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
119-404
 ID: PF00800
score: 100.00 (hhsearch)
coverage over query:
122-298
 ID: GO:0047769 (confident match)
name: arogenate dehydratase activity
 PDB ID: 2qmw chain A
(very confident match)
coverage over query:
118-348,363-401
1g014547m 423 ID: Q9SGD6 (confident match)
name: Arogenate dehydratase/prephenate dehydratase 6, chloroplastic
def: Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0077
name: PheA Prephenate dehydratase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
127-413
 ID: PF00800
score: 100.00 (hhsearch)
coverage over query:
130-308
 ID: GO:0047769 (very confident match)
name: arogenate dehydratase activity
 PDB ID: 2qmw chain A
(very confident match)
coverage over query:
127-358,373-411
1g048784m 282 ID: Q9SSE7 (portable match)
name: Arogenate dehydratase/prephenate dehydratase 2, chloroplastic
def: Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0077
name: PheA Prephenate dehydratase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-279
 ID: PF00800
score: 100.00 (hhsearch)
coverage over query:
1-173
 ID: GO:0047769 (confident match)
name: arogenate dehydratase activity
 PDB ID: 2qmw chain A
(very confident match)
coverage over query:
1-222,236-275
1g036073m 241 no hit ID: COG0077
name: PheA Prephenate dehydratase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
13-240
 ID: PF00800
score: 100.00 (hhsearch)
coverage over query:
16-192
 ID: GO:0047769 (portable match)
name: arogenate dehydratase activity
 PDB ID: 2qmw chain A
(very confident match)
coverage over query:
12-239
1g026861m 232 ID: P49077 (portable match)
name: Aspartate carbamoyltransferase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0078
name: ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
82-230
 ID: PF00185
score: 100.00 (hhsearch)
coverage over query:
90-228
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1pg5 chain A
(very confident match)
coverage over query:
102-231
1g026841m 232 ID: P49077 (portable match)
name: Aspartate carbamoyltransferase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0078
name: ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
81-230
 ID: PF00185
score: 100.00 (hhsearch)
coverage over query:
100-228
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1pg5 chain A
(very confident match)
coverage over query:
82-231
1g024871m 261 ID: B7GM02 (portable match)
name: Ornithine carbamoyltransferase
def:
source: Anoxybacillus flavithermus (strain DSM 21510 / WK1) (taxid: 491915)
 ID: COG0078
name: ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-260
 ID: PF00185
score: 100.00 (hhsearch)
coverage over query:
106-258
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 4f2g chain A
(very confident match)
coverage over query:
1-260
1g019868m 334 ID: P0DI07 (portable match)
name: Histidinol-phosphate aminotransferase 2, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0079
name: HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
68-333
 ID: PF00155
score: 100.00 (hhsearch)
coverage over query:
96-330
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1v2d chain A
(very confident match)
coverage over query:
96-328
1g014594m 422 ID: P0DI07 (confident match)
name: Histidinol-phosphate aminotransferase 2, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0079
name: HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
68-421
 ID: PF00155
score: 100.00 (hhsearch)
coverage over query:
96-421
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1v2d chain A
(very confident match)
coverage over query:
96-421
1g014492m 423 ID: P0DI07 (confident match)
name: Histidinol-phosphate aminotransferase 2, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0079
name: HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
68-422
 ID: PF00155
score: 100.00 (hhsearch)
coverage over query:
96-422
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1v2d chain A
(very confident match)
coverage over query:
96-422
1g025730m 249 no hit ID: COG0079
name: HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
score:99.96 (hhsearch)
coverage over query:
68-245
 ID: PF00155
score: 99.84 (hhsearch)
coverage over query:
96-249
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 3ftb chain A
(very confident match)
coverage over query:
91-234
1g042478m 954 ID: A5GPD5 (portable match)
name: 50S ribosomal protein L11
def: This protein binds directly to 23S ribosomal RNA.
source: Synechococcus sp. (strain WH7803) (taxid: 32051)
 ID: COG0080
name: RplK Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
806-945
 ID: PF00082
score: 100.00 (hhsearch)
coverage over query:
143-590
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 3bbo chain K
(very confident match)
coverage over query:
748-954
1g031693m 155 ID: B0RU93 (portable match)
name: 50S ribosomal protein L11
def: This protein binds directly to 23S ribosomal RNA.
source: Xanthomonas campestris pv. campestris (strain B100) (taxid: 509169)
 ID: COG0080
name: RplK Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
11-153
 ID: PF00298
score: 99.96 (hhsearch)
coverage over query:
80-150
 ID: GO:0006354 (portable match)
name: DNA-dependent transcription, elongation
 PDB ID: 3egv chain B
(very confident match)
coverage over query:
11-153
1g031086m 166 ID: O75000 (confident match)
name: 60S ribosomal protein L12
def: This protein binds directly to 26S ribosomal RNA.
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0080
name: RplK Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
7-147
 ID: PF03946
score: 99.95 (hhsearch)
coverage over query:
12-70
 ID: GO:0005773 (confident match)
name: vacuole
 PDB ID: 1wib chain A
(very confident match)
coverage over query:
1-87
1g031095m 166 ID: Q9LFH5 (confident match)
name: 60S ribosomal protein L12-2
def: Binds directly to 26S ribosomal RNA.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0080
name: RplK Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
8-147
 ID: PF03946
score: 99.95 (hhsearch)
coverage over query:
12-70
 ID: GO:0005773 (very confident match)
name: vacuole
 PDB ID: 1wib chain A
(very confident match)
coverage over query:
1-87
1g017710m 367 ID: Q9LY66 (portable match)
name: 50S ribosomal protein L1, chloroplastic
def: This protein binds directly to 23S ribosomal RNA.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0081
name: RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
132-355
 ID: PF00687
score: 100.00 (hhsearch)
coverage over query:
162-350
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3bbo chain D
(very confident match)
coverage over query:
130-366
1g022545m 295 ID: Q9LY66 (portable match)
name: 50S ribosomal protein L1, chloroplastic
def: This protein binds directly to 23S ribosomal RNA.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0081
name: RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
59-283
 ID: PF00687
score: 100.00 (hhsearch)
coverage over query:
90-278
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3bbo chain D
(very confident match)
coverage over query:
62-294
1g019646m 337 ID: Q9LY66 (portable match)
name: 50S ribosomal protein L1, chloroplastic
def: This protein binds directly to 23S ribosomal RNA.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0081
name: RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
117-325
 ID: PF00687
score: 100.00 (hhsearch)
coverage over query:
132-320
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 3bbo chain D
(very confident match)
coverage over query:
131-336
1g015100m 413 no hit ID: COG0081
name: RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
score:99.96 (hhsearch)
coverage over query:
19-249
 ID: PF00687
score: 100.00 (hhsearch)
coverage over query:
28-249
 ID: GO:0016020 (portable match)
name: membrane
 PDB ID: 1i2a chain A
(very confident match)
coverage over query:
20-249
1g014066m 431 no hit ID: COG0081
name: RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
18-257
 ID: PF00687
score: 100.00 (hhsearch)
coverage over query:
28-251
 ID: GO:0016020 (portable match)
name: membrane
 PDB ID: 1mzp chain A
(very confident match)
coverage over query:
18-254
1g031726m 154 ID: P53027 (portable match)
name: 60S ribosomal protein L10a (Fragment)
def:
source: Sus scrofa (taxid: 9823)
 ID: COG0081
name: RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
13-153
 ID: PF00687
score: 99.91 (hhsearch)
coverage over query:
24-153
 ID: GO:0022625 (confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3iz5 chain A
(very confident match)
coverage over query:
1-132
1g027876m 217 ID: P59231 (confident match)
name: 60S ribosomal protein L10a-3
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0081
name: RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
4-217
 ID: PF00687
score: 100.00 (hhsearch)
coverage over query:
13-213
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3iz5 chain A
(very confident match)
coverage over query:
1-217
1g027868m 217 ID: P59231 (confident match)
name: 60S ribosomal protein L10a-3
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0081
name: RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
4-217
 ID: PF00687
score: 100.00 (hhsearch)
coverage over query:
13-213
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3iz5 chain A
(very confident match)
coverage over query:
1-217
1g027855m 217 ID: P59231 (confident match)
name: 60S ribosomal protein L10a-3
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0081
name: RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
4-217
 ID: PF00687
score: 100.00 (hhsearch)
coverage over query:
13-213
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3iz5 chain A
(very confident match)
coverage over query:
1-217
1g027063m 229 ID: P59231 (confident match)
name: 60S ribosomal protein L10a-3
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0081
name: RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
11-215
 ID: PF00687
score: 100.00 (hhsearch)
coverage over query:
13-212
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3iz5 chain A
(very confident match)
coverage over query:
1-216
1g036232m 259 ID: Q8VZB9 (confident match)
name: 60S ribosomal protein L10a-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0081
name: RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
39-259
 ID: PF00687
score: 100.00 (hhsearch)
coverage over query:
56-255
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3iz5 chain A
(very confident match)
coverage over query:
44-259
1g031803m 152 ID: Q9VTP4 (portable match)
name: 60S ribosomal protein L10a-2
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0081
name: RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
5-146
 ID: PF00687
score: 99.89 (hhsearch)
coverage over query:
24-146
 ID: GO:0022625 (confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3iz5 chain A
(very confident match)
coverage over query:
1-133
1g015333m 409 no hit ID: COG0081
name: RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
175-394
 ID: PF00687
score: 100.00 (hhsearch)
coverage over query:
197-389
 ID: GO:0044444 (portable match)
name: cytoplasmic part
 PDB ID: 2ov7 chain A
(very confident match)
coverage over query:
175-230,322-395
1g022012m 304 no hit ID: COG0081
name: RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
175-304
 ID: PF00687
score: 99.79 (hhsearch)
coverage over query:
197-303
 no hit PDB ID: 3qoy chain A
(very confident match)
coverage over query:
175-304
1g034832m 82 no hit ID: COG0081
name: RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
score:99.89 (hhsearch)
coverage over query:
1-67
 ID: PF00687
score: 99.41 (hhsearch)
coverage over query:
2-62
 no hit PDB ID: 1mzp chain A
(very confident match)
coverage over query:
1-66
1g013510m 441 ID: B7JVZ9 (confident match)
name: Chorismate synthase
def:
source: Cyanothece sp. (strain PCC 8801) (taxid: 41431)
 ID: COG0082
name: AroC Chorismate synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
53-424
 ID: PF01264
score: 100.00 (hhsearch)
coverage over query:
61-409
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2o11 chain A
(very confident match)
coverage over query:
60-425
1g022731m 293 ID: B7JVZ9 (portable match)
name: Chorismate synthase
def:
source: Cyanothece sp. (strain PCC 8801) (taxid: 41431)
 ID: COG0082
name: AroC Chorismate synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-279
 ID: PF01264
score: 100.00 (hhsearch)
coverage over query:
1-261
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2o11 chain A
(very confident match)
coverage over query:
3-289
1g017617m 368 ID: B7JVZ9 (portable match)
name: Chorismate synthase
def:
source: Cyanothece sp. (strain PCC 8801) (taxid: 41431)
 ID: COG0082
name: AroC Chorismate synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
53-366
 ID: PF01264
score: 100.00 (hhsearch)
coverage over query:
61-366
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1sq1 chain A
(very confident match)
coverage over query:
54-366
1g015142m 412 ID: B7JVZ9 (portable match)
name: Chorismate synthase
def:
source: Cyanothece sp. (strain PCC 8801) (taxid: 41431)
 ID: COG0082
name: AroC Chorismate synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
53-397
 ID: PF01264
score: 100.00 (hhsearch)
coverage over query:
61-397
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2o11 chain A
(very confident match)
coverage over query:
60-403
1g013280m 446 ID: P57720 (confident match)
name: Chorismate synthase, chloroplastic
def: Catalyzes the last common step of the biosynthesis of aromatic amino acids, produced via the shikimic acid pathway.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0082
name: AroC Chorismate synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
53-429
 ID: PF01264
score: 100.00 (hhsearch)
coverage over query:
61-414
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2o11 chain A
(very confident match)
coverage over query:
60-430
1g017756m 366 ID: B4T6C6 (portable match)
name: Homoserine kinase
def: Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate.
source: Salmonella newport (strain SL254) (taxid: 423368)
 ID: COG0083
name: ThrB Homoserine kinase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
47-360
 ID: PF00288
score: 99.43 (hhsearch)
coverage over query:
130-196
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3hul chain A
(very confident match)
coverage over query:
49-361
1g025866m 247 no hit ID: COG0084
name: TatD Mg-dependent DNase [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
2-238
 ID: PF01026
score: 100.00 (hhsearch)
coverage over query:
2-237
 ID: GO:0005634 (portable match)
name: nucleus
 PDB ID: 2y1h chain A
(very confident match)
coverage over query:
3-152,189-244
1g025333m 254 no hit ID: COG0084
name: TatD Mg-dependent DNase [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
2-245
 ID: PF01026
score: 100.00 (hhsearch)
coverage over query:
2-244
 ID: GO:0005634 (portable match)
name: nucleus
 PDB ID: 2y1h chain A
(very confident match)
coverage over query:
3-157,196-250
1g020985m 319 ID: Q6P1N9 (portable match)
name: Putative deoxyribonuclease TATDN1
def: Putative deoxyribonuclease.
source: Homo sapiens (taxid: 9606)
 ID: COG0084
name: TatD Mg-dependent DNase [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
4-301
 ID: PF01026
score: 100.00 (hhsearch)
coverage over query:
7-300
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3e2v chain A
(very confident match)
coverage over query:
3-301
1g035377m 66 no hit ID: COG0084
name: TatD Mg-dependent DNase [DNA replication, recombination, and repair]
score:99.91 (hhsearch)
coverage over query:
1-66
 ID: PF01026
score: 99.77 (hhsearch)
coverage over query:
4-66
 no hit PDB ID: 2y1h chain A
(very confident match)
coverage over query:
1-66
1g001050m 1173 ID: Q9LK40 (portable match)
name: DNA-directed RNA polymerase D subunit 2a
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity). Second largest component of RNA polymerase IVa (Pol IV) and IVb (Pol V) which mediate short-interfering RNAs (siRNA) accumulation and subsequent RNA-directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of endogenous repeated sequences, including transposable elements. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Also required for full erasure of methylation when the RNA trigger is withdrawn. Required for intercellular RNA interference (RNAi) leading to systemic post-transcriptional gene silencing. Involved in the maintenance of post-transcriptional RNA silencing. During interphase, mediates siRNA-independent heterochromatin association and methylation into chromocenters and condensation and cytosine methylation at pericentromeric major repeats. Required for complete maintenance of the 35S promoter homology-dependent TGS in transgenic plants.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
22-1171
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
692-1070
 ID: GO:0005720 (confident match)
name: nuclear heterochromatin
 PDB ID: 3lu0 chain C
(very confident match)
coverage over query:
26-68,81-102,114-174
,193-446,460-537
,562-570,646-1113
,1132-1169
1g001021m 1186 ID: P38420 (confident match)
name: DNA-directed RNA polymerase II subunit RPB2
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB2 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
24-1174
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
706-1078
 ID: GO:0005829 (very confident match)
name: cytosol
 PDB ID: 3h0g chain B
(very confident match)
coverage over query:
23-1174
1g003180m 842 ID: P38420 (confident match)
name: DNA-directed RNA polymerase II subunit RPB2
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB2 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
1-830
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
362-734
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3h0g chain B
(very confident match)
coverage over query:
1-830
1g000996m 1195 ID: P38420 (confident match)
name: DNA-directed RNA polymerase II subunit RPB2
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB2 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
24-1183
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
715-1087
 ID: GO:0005829 (very confident match)
name: cytosol
 PDB ID: 3h0g chain B
(very confident match)
coverage over query:
22-1183
1g001943m 993 ID: P59470 (portable match)
name: DNA-directed RNA polymerase III subunit RPC2
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol III is composed of mobile elements and RPC2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft. Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts induce type I interferon and NF- Kappa-B through the RIG-I pathway.
source: Mus musculus (taxid: 10090)
 ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
27-989
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
674-989
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3lu0 chain C
(very confident match)
coverage over query:
24-148,173-429,442-512
,526-530,543-556
,581-612,634-964
1g001125m 1149 ID: P59470 (portable match)
name: DNA-directed RNA polymerase III subunit RPC2
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol III is composed of mobile elements and RPC2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft. Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts induce type I interferon and NF- Kappa-B through the RIG-I pathway.
source: Mus musculus (taxid: 10090)
 ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
27-1148
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
674-1053
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3lu0 chain C
(very confident match)
coverage over query:
24-148,173-429,442-511
,525-530,543-558
,583-609,635-642
,653-1096,1108-1145
1g001092m 1159 ID: P59470 (portable match)
name: DNA-directed RNA polymerase III subunit RPC2
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol III is composed of mobile elements and RPC2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft. Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts induce type I interferon and NF- Kappa-B through the RIG-I pathway.
source: Mus musculus (taxid: 10090)
 ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
27-1158
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
674-1063
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3lu0 chain C
(very confident match)
coverage over query:
24-148,173-429,442-512
,526-530,543-558
,583-610,636-642
,653-804,818-1106
,1118-1155
1g001124m 1149 ID: P59470 (portable match)
name: DNA-directed RNA polymerase III subunit RPC2
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol III is composed of mobile elements and RPC2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft. Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts induce type I interferon and NF- Kappa-B through the RIG-I pathway.
source: Mus musculus (taxid: 10090)
 ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
27-1148
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
674-1053
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3lu0 chain C
(very confident match)
coverage over query:
24-148,173-429,442-511
,525-530,543-558
,583-609,635-642
,653-1096,1108-1145
1g001532m 1058 ID: P59470 (portable match)
name: DNA-directed RNA polymerase III subunit RPC2
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol III is composed of mobile elements and RPC2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft. Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts induce type I interferon and NF- Kappa-B through the RIG-I pathway.
source: Mus musculus (taxid: 10090)
 ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
27-1057
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
674-1053
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3h0g chain B
(very confident match)
coverage over query:
24-1056
1g001179m 1131 ID: Q9P7X8 (portable match)
name: Probable DNA-directed RNA polymerase I subunit RPA2
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase I which synthesizes ribosomal RNA precursors. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol I is composed of mobile elements and RPA2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft.
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
5-1128
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
639-1014
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3lu0 chain C
(very confident match)
coverage over query:
9-79,104-387,402-473
,498-506,517-530
,543-597,608-925
,940-1057,1087-1124
1g002296m 940 no hit ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
6-917
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
639-917
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3h0g chain B
(very confident match)
coverage over query:
9-207,219-479,491-917
1g019610m 338 no hit ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
1-330
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
1-246
 no hit PDB ID: 3h0g chain B
(very confident match)
coverage over query:
1-183,198-331
1g002545m 910 no hit ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
7-909
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
639-909
 no hit PDB ID: 3h0g chain B
(very confident match)
coverage over query:
628-908
1g045556m 96 no hit ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
1-96
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
2-96
 no hit PDB ID: 4ayb chain B
(very confident match)
coverage over query:
1-96
1g014847m 417 no hit ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
1-410
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
6-325
 no hit PDB ID: 3h0g chain B
(very confident match)
coverage over query:
1-262,277-410
1g014858m 417 no hit ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
1-410
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
6-325
 no hit PDB ID: 3h0g chain B
(very confident match)
coverage over query:
1-262,277-410
1g046830m 518 ID: O27123 (portable match)
name: DNA-directed RNA polymerase subunit B''
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The B (B''+B' and beta) subunits have been implicated in DNA promoter recognition and also in nucleotide binding.
source: Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)
 ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
16-517
 ID: PF04563
score: 100.00 (hhsearch)
coverage over query:
33-178
 ID: GO:0005665 (portable match)
name: DNA-directed RNA polymerase II, core complex
 PDB ID: 3h0g chain B
(very confident match)
coverage over query:
14-518
1g000525m 1443 ID: Q9LQ02 (portable match)
name: DNA-directed RNA polymerase D subunit 1
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity). Largest and catalytic component of RNA polymerase IVa which mediates 24-nt short-interfering RNAs (siRNA) accumulation. Implicated in siRNA-directed heterochromatin formation through the action of DCL3 and AGO4, and subsequent DNA methylation-dependent silencing of endogenous repeated sequences, including transposable elements. Essential component of a self-reinforcing loop coupling de novo DNA methylation to siRNA production. Required for intercellular but not intracellular RNA interference (RNAi) leading to systemic post-transcriptional gene silencing. Involved in the maintenance of post-transcriptional RNA silencing.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
17-861
 ID: PF00623
score: 100.00 (hhsearch)
coverage over query:
319-478
 ID: GO:0005654 (confident match)
name: nucleoplasm
 PDB ID: 3h0g chain A
(very confident match)
coverage over query:
11-877
1g046825m 1208 no hit ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
1-1047
 ID: PF00623
score: 100.00 (hhsearch)
coverage over query:
384-569
 ID: GO:0009506 (portable match)
name: plasmodesma
 PDB ID: 3h0g chain A
(very confident match)
coverage over query:
1-119,131-165,200-204
,227-230,241-476
,488-627,643-685
,743-1206
1g000882m 1238 no hit ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
14-754
 ID: PF00623
score: 100.00 (hhsearch)
coverage over query:
253-411
 ID: GO:0016604 (portable match)
name: nuclear body
 PDB ID: 3h0g chain A
(very confident match)
coverage over query:
56-748
1g000291m 1714 no hit ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
14-754
 ID: PF00623
score: 100.00 (hhsearch)
coverage over query:
253-411
 ID: GO:0016604 (portable match)
name: nuclear body
 PDB ID: 3h0g chain A
(very confident match)
coverage over query:
56-748
1g045123m 219 no hit ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:99.94 (hhsearch)
coverage over query:
14-192
 ID: PF04997
score: 100.00 (hhsearch)
coverage over query:
13-193
 ID: GO:0044238 (portable match)
name: primary metabolic process
 PDB ID: 3h0g chain A
(very confident match)
coverage over query:
3-219
1g000235m 1815 ID: P16356 (portable match)
name: DNA-directed RNA polymerase II subunit RPB1
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing.
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
14-887
 ID: PF04998
score: 100.00 (hhsearch)
coverage over query:
815-1373
 ID: GO:0005665 (portable match)
name: DNA-directed RNA polymerase II, core complex
 PDB ID: 3h0g chain A
(very confident match)
coverage over query:
4-1692,1706-1747
1g000828m 1265 ID: O14802 (portable match)
name: DNA-directed RNA polymerase III subunit RPC1
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Forms the polymerase active center together with the second largest subunit. A single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol III. A bridging helix emanates from RPC1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol III by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition (By similarity). Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts, such as Epstein-Barr virus-encoded RNAs (EBERs) induce type I interferon and NF- Kappa-B through the RIG-I pathway.
source: Homo sapiens (taxid: 9606)
 ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
30-785
 ID: PF04998
score: 100.00 (hhsearch)
coverage over query:
712-1200
 ID: GO:0005730 (confident match)
name: nucleolus
 PDB ID: 3h0g chain A
(very confident match)
coverage over query:
85-470,488-801
1g000829m 1265 ID: O14802 (portable match)
name: DNA-directed RNA polymerase III subunit RPC1
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Forms the polymerase active center together with the second largest subunit. A single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol III. A bridging helix emanates from RPC1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol III by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition (By similarity). Plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts, such as Epstein-Barr virus-encoded RNAs (EBERs) induce type I interferon and NF- Kappa-B through the RIG-I pathway.
source: Homo sapiens (taxid: 9606)
 ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
30-785
 ID: PF04998
score: 100.00 (hhsearch)
coverage over query:
712-1200
 ID: GO:0005730 (confident match)
name: nucleolus
 PDB ID: 3h0g chain A
(very confident match)
coverage over query:
85-470,488-801
1g022045m 303 ID: P22738 (portable match)
name: 60S ribosomal protein L3-2
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0087
name: RplC Ribosomal protein L3 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
43-276
 ID: PF00297
score: 100.00 (hhsearch)
coverage over query:
50-303
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 2zkr chain b
(very confident match)
coverage over query:
1-303
1g016469m 389 ID: P36584 (confident match)
name: 60S ribosomal protein L3-B
def:
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0087
name: RplC Ribosomal protein L3 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
43-350
 ID: PF00297
score: 100.00 (hhsearch)
coverage over query:
50-343
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 2zkr chain b
(very confident match)
coverage over query:
1-389
1g016467m 389 ID: P36584 (confident match)
name: 60S ribosomal protein L3-B
def:
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0087
name: RplC Ribosomal protein L3 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
43-350
 ID: PF00297
score: 100.00 (hhsearch)
coverage over query:
50-343
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 2zkr chain b
(very confident match)
coverage over query:
1-389
1g038172m 323 ID: Q759R7 (portable match)
name: 60S ribosomal protein L3
def:
source: Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)
 ID: COG0087
name: RplC Ribosomal protein L3 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
63-314
 ID: PF00297
score: 100.00 (hhsearch)
coverage over query:
70-319
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 2zkr chain b
(very confident match)
coverage over query:
21-323
1g023905m 275 ID: Q9SKX4 (confident match)
name: 50S ribosomal protein L3-1, chloroplastic
def: One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0087
name: RplC Ribosomal protein L3 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
59-270
 ID: PF00297
score: 100.00 (hhsearch)
coverage over query:
66-263
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3bbo chain F
(very confident match)
coverage over query:
52-275
1g048058m 157 ID: Q58DW0 (portable match)
name: 60S ribosomal protein L4
def:
source: Bos taurus (taxid: 9913)
 ID: COG0088
name: RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
6-150
 ID: PF00573
score: 100.00 (hhsearch)
coverage over query:
26-145
 ID: GO:0005618 (portable match)
name: cell wall
 PDB ID: 2zkr chain c
(very confident match)
coverage over query:
2-157
1g025562m 251 no hit ID: COG0088
name: RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
98-247
 ID: PF00573
score: 100.00 (hhsearch)
coverage over query:
114-243
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2ftc chain D
(very confident match)
coverage over query:
131-244
1g021591m 310 ID: Q2RQW1 (portable match)
name: 50S ribosomal protein L4
def: Forms part of the polypeptide exit tunnel.
source: Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)
 ID: COG0088
name: RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
98-306
 ID: PF00573
score: 100.00 (hhsearch)
coverage over query:
114-303
 ID: GO:0006354 (portable match)
name: DNA-dependent transcription, elongation
 PDB ID: 2ftc chain D
(very confident match)
coverage over query:
131-302
1g022312m 299 no hit ID: COG0088
name: RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
98-297
 ID: PF00573
score: 100.00 (hhsearch)
coverage over query:
114-298
 ID: GO:0006354 (portable match)
name: DNA-dependent transcription, elongation
 PDB ID: 3bbo chain G
(very confident match)
coverage over query:
97-298
1g023032m 288 ID: O50061 (portable match)
name: 50S ribosomal protein L4, chloroplastic
def: This protein binds directly and specifically to 23S rRNA (By similarity). May play a role in plastid transcriptional regulation.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0088
name: RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
50-262
 ID: PF00573
score: 100.00 (hhsearch)
coverage over query:
67-259
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3bbo chain G
(very confident match)
coverage over query:
3-276
1g023024m 288 ID: O50061 (portable match)
name: 50S ribosomal protein L4, chloroplastic
def: This protein binds directly and specifically to 23S rRNA (By similarity). May play a role in plastid transcriptional regulation.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0088
name: RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
50-262
 ID: PF00573
score: 100.00 (hhsearch)
coverage over query:
67-259
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3bbo chain G
(very confident match)
coverage over query:
3-276
1g027581m 221 no hit ID: COG0088
name: RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
98-213
 ID: PF00573
score: 100.00 (hhsearch)
coverage over query:
114-212
 no hit PDB ID: 3bbo chain G
(very confident match)
coverage over query:
96-209
1g031815m 152 ID: P62751 (confident match)
name: 60S ribosomal protein L23a
def: This protein binds to a specific region on the 26S rRNA.
source: Mus musculus (taxid: 10090)
 ID: COG0089
name: RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
score:99.94 (hhsearch)
coverage over query:
69-151
 ID: PF00276
score: 99.93 (hhsearch)
coverage over query:
70-148
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 2zkr chain s
(very confident match)
coverage over query:
1-152
1g030945m 168 ID: P62751 (portable match)
name: 60S ribosomal protein L23a
def: This protein binds to a specific region on the 26S rRNA.
source: Mus musculus (taxid: 10090)
 ID: COG0089
name: RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
score:99.93 (hhsearch)
coverage over query:
85-167
 ID: PF00276
score: 99.92 (hhsearch)
coverage over query:
86-164
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 2zkr chain s
(very confident match)
coverage over query:
17-168
1g031766m 153 ID: Q9M3C3 (confident match)
name: 60S ribosomal protein L23a-2
def: Binds to a specific region on the 26S rRNA.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0089
name: RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
score:99.94 (hhsearch)
coverage over query:
70-152
 ID: PF00276
score: 99.93 (hhsearch)
coverage over query:
71-149
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 2zkr chain s
(very confident match)
coverage over query:
1-153
1g031733m 153 ID: Q9M3C3 (confident match)
name: 60S ribosomal protein L23a-2
def: Binds to a specific region on the 26S rRNA.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0089
name: RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
score:99.94 (hhsearch)
coverage over query:
70-152
 ID: PF00276
score: 99.93 (hhsearch)
coverage over query:
71-149
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 2zkr chain s
(very confident match)
coverage over query:
1-153
1g031794m 153 ID: Q9M3C3 (confident match)
name: 60S ribosomal protein L23a-2
def: Binds to a specific region on the 26S rRNA.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0089
name: RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
score:99.94 (hhsearch)
coverage over query:
70-152
 ID: PF00276
score: 99.93 (hhsearch)
coverage over query:
71-149
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 2zkr chain s
(very confident match)
coverage over query:
1-153
1g030915m 169 no hit ID: COG0089
name: RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
score:99.92 (hhsearch)
coverage over query:
12-101
 ID: PF00276
score: 99.94 (hhsearch)
coverage over query:
13-100
 ID: GO:0006354 (portable match)
name: DNA-dependent transcription, elongation
 PDB ID: 2zjr chain Q
(very confident match)
coverage over query:
12-101
1g048067m 75 no hit ID: COG0089
name: RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
score:99.87 (hhsearch)
coverage over query:
5-75
 ID: PF00276
score: 99.88 (hhsearch)
coverage over query:
7-75
 no hit PDB ID: 2zjr chain Q
(very confident match)
coverage over query:
5-75
1g044569m 116 no hit ID: COG0089
name: RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
score:99.84 (hhsearch)
coverage over query:
22-112
 ID: PF00276
score: 99.86 (hhsearch)
coverage over query:
22-111
 no hit PDB ID: 2zjr chain Q
(very confident match)
coverage over query:
22-36,52-111
1g037430m 198 ID: P46286 (confident match)
name: 60S ribosomal protein L8-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0090
name: RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-198
 ID: PF03947
score: 100.00 (hhsearch)
coverage over query:
96-190
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 3iz5 chain B
(very confident match)
coverage over query:
1-198
1g024947m 260 ID: P46286 (confident match)
name: 60S ribosomal protein L8-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0090
name: RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-246
 ID: PF03947
score: 100.00 (hhsearch)
coverage over query:
96-231
 ID: GO:0005774 (very confident match)
name: vacuolar membrane
 PDB ID: 3iz5 chain B
(very confident match)
coverage over query:
1-260
1g027745m 219 no hit ID: COG0090
name: RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
32-217
 ID: PF03947
score: 100.00 (hhsearch)
coverage over query:
68-201
 ID: GO:0006511 (portable match)
name: ubiquitin-dependent protein catabolic process
 PDB ID: 3bbo chain E
(very confident match)
coverage over query:
31-218
1g027746m 219 no hit ID: COG0090
name: RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
32-217
 ID: PF03947
score: 100.00 (hhsearch)
coverage over query:
68-201
 ID: GO:0006511 (portable match)
name: ubiquitin-dependent protein catabolic process
 PDB ID: 3bbo chain E
(very confident match)
coverage over query:
31-218
1g027754m 219 no hit ID: COG0090
name: RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
32-217
 ID: PF03947
score: 100.00 (hhsearch)
coverage over query:
68-201
 ID: GO:0006511 (portable match)
name: ubiquitin-dependent protein catabolic process
 PDB ID: 3bbo chain E
(very confident match)
coverage over query:
31-218
1g043842m 129 no hit ID: COG0090
name: RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
4-128
 ID: PF03947
score: 100.00 (hhsearch)
coverage over query:
4-124
 ID: GO:0022625 (portable match)
name: cytosolic large ribosomal subunit
 PDB ID: 4a17 chain A
(very confident match)
coverage over query:
4-121
1g047220m 128 no hit ID: COG0090
name: RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
4-128
 ID: PF03947
score: 100.00 (hhsearch)
coverage over query:
11-125
 ID: GO:0022625 (portable match)
name: cytosolic large ribosomal subunit
 PDB ID: 3bbo chain E
(very confident match)
coverage over query:
5-128
1g045484m 179 no hit ID: COG0090
name: RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
19-169
 ID: PF03947
score: 100.00 (hhsearch)
coverage over query:
39-153
 no hit PDB ID: 3bbo chain E
(very confident match)
coverage over query:
17-169
1g040446m 270 no hit ID: COG0091
name: RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
108-218
 ID: PF00237
score: 100.00 (hhsearch)
coverage over query:
112-216
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 3bbo chain U
(very confident match)
coverage over query:
108-221
1g033288m 122 ID: Q93VI3 (confident match)
name: 60S ribosomal protein L17-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0091
name: RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]
score:99.97 (hhsearch)
coverage over query:
26-104
 ID: PF00237
score: 99.94 (hhsearch)
coverage over query:
26-102
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2zkr chain r
(very confident match)
coverage over query:
1-114
1g030658m 173 ID: Q93VI3 (confident match)
name: 60S ribosomal protein L17-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0091
name: RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
4-155
 ID: PF00237
score: 100.00 (hhsearch)
coverage over query:
17-153
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2zkr chain r
(very confident match)
coverage over query:
1-165
1g029751m 188 ID: Q93VI3 (confident match)
name: 60S ribosomal protein L17-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0091
name: RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
4-155
 ID: PF00237
score: 100.00 (hhsearch)
coverage over query:
17-153
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2zkr chain r
(very confident match)
coverage over query:
1-164
1g031743m 153 ID: Q93VI3 (confident match)
name: 60S ribosomal protein L17-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0091
name: RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
4-152
 ID: PF00237
score: 100.00 (hhsearch)
coverage over query:
17-152
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2zkr chain r
(very confident match)
coverage over query:
1-152
1g031778m 153 ID: Q93VI3 (confident match)
name: 60S ribosomal protein L17-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0091
name: RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
4-152
 ID: PF00237
score: 100.00 (hhsearch)
coverage over query:
17-152
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2zkr chain r
(very confident match)
coverage over query:
1-152
1g030568m 175 ID: Q93VI3 (confident match)
name: 60S ribosomal protein L17-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0091
name: RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
4-155
 ID: PF00237
score: 100.00 (hhsearch)
coverage over query:
17-153
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2zkr chain r
(very confident match)
coverage over query:
1-164
1g030676m 173 ID: Q93VI3 (confident match)
name: 60S ribosomal protein L17-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0091
name: RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
4-155
 ID: PF00237
score: 100.00 (hhsearch)
coverage over query:
17-153
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2zkr chain r
(very confident match)
coverage over query:
1-165
1g028931m 201 ID: P56795 (portable match)
name: 50S ribosomal protein L22, chloroplastic
def: The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0091
name: RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
81-193
 ID: PF00237
score: 100.00 (hhsearch)
coverage over query:
87-191
 ID: GO:0009536 (portable match)
name: plastid
 PDB ID: 3bbo chain U
(very confident match)
coverage over query:
81-198
1g030580m 175 ID: A4GYV0 (portable match)
name: 50S ribosomal protein L22, chloroplastic
def: The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
source: Populus trichocarpa (taxid: 3694)
 ID: COG0091
name: RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
81-175
 ID: PF00237
score: 99.97 (hhsearch)
coverage over query:
87-175
 no hit PDB ID: 3bbo chain U
(very confident match)
coverage over query:
82-175
1g046473m 120 ID: P23396 (portable match)
name: 40S ribosomal protein S3
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0092
name: RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-112
 ID: PF00189
score: 99.91 (hhsearch)
coverage over query:
34-112
 ID: GO:0009506 (confident match)
name: plasmodesma
 PDB ID: 2zkq chain c
(very confident match)
coverage over query:
2-115
1g026316m 240 ID: P23396 (confident match)
name: 40S ribosomal protein S3
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0092
name: RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
6-226
 ID: PF00189
score: 99.93 (hhsearch)
coverage over query:
104-196
 ID: GO:0009506 (very confident match)
name: plasmodesma
 PDB ID: 3iz6 chain B
(very confident match)
coverage over query:
1-232
1g026588m 236 ID: P23396 (confident match)
name: 40S ribosomal protein S3
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0092
name: RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
5-217
 ID: PF00189
score: 99.94 (hhsearch)
coverage over query:
104-188
 ID: GO:0009506 (very confident match)
name: plasmodesma
 PDB ID: 3iz6 chain B
(very confident match)
coverage over query:
1-225
1g026835m 232 ID: P23396 (confident match)
name: 40S ribosomal protein S3
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0092
name: RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
5-221
 ID: PF00189
score: 99.94 (hhsearch)
coverage over query:
104-188
 ID: GO:0009506 (very confident match)
name: plasmodesma
 PDB ID: 3iz6 chain B
(very confident match)
coverage over query:
1-218
1g029201m 197 ID: Q9SIP7 (confident match)
name: 40S ribosomal protein S3-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0092
name: RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
5-196
 ID: PF00189
score: 99.95 (hhsearch)
coverage over query:
104-188
 ID: GO:0009506 (very confident match)
name: plasmodesma
 PDB ID: 2zkq chain c
(very confident match)
coverage over query:
1-192
1g040226m 137 ID: P23396 (portable match)
name: 40S ribosomal protein S3
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0092
name: RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
7-137
 ID: PF07650
score: 99.70 (hhsearch)
coverage over query:
20-96
 ID: GO:0009506 (confident match)
name: plasmodesma
 PDB ID: 2zkq chain c
(very confident match)
coverage over query:
1-136
1g032476m 140 ID: P49690 (confident match)
name: 60S ribosomal protein L23
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0093
name: RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
19-140
 ID: PF00238
score: 100.00 (hhsearch)
coverage over query:
19-140
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3u5e chain V
(very confident match)
coverage over query:
5-140
1g033177m 125 ID: P49690 (confident match)
name: 60S ribosomal protein L23
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0093
name: RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
19-117
 ID: PF00238
score: 100.00 (hhsearch)
coverage over query:
19-121
 ID: GO:0022625 (confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3u5e chain V
(very confident match)
coverage over query:
6-115
1g033152m 126 ID: P62830 (confident match)
name: 60S ribosomal protein L23
def:
source: Mus musculus (taxid: 10090)
 ID: COG0093
name: RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
19-126
 ID: PF00238
score: 100.00 (hhsearch)
coverage over query:
19-126
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3u5e chain V
(very confident match)
coverage over query:
5-126
1g030918m 169 ID: A6X0C8 (portable match)
name: 50S ribosomal protein L14
def: Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.
source: Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) (taxid: 439375)
 ID: COG0093
name: RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
50-169
 ID: PF00238
score: 100.00 (hhsearch)
coverage over query:
50-169
 ID: GO:0070180 (portable match)
name: LSU rRNA binding
 PDB ID: 3bbo chain M
(very confident match)
coverage over query:
50-169
1g030893m 169 ID: A6X0C8 (portable match)
name: 50S ribosomal protein L14
def: Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.
source: Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) (taxid: 439375)
 ID: COG0093
name: RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
50-169
 ID: PF00238
score: 100.00 (hhsearch)
coverage over query:
50-169
 ID: GO:0070180 (portable match)
name: LSU rRNA binding
 PDB ID: 3bbo chain M
(very confident match)
coverage over query:
50-169
1g036919m 132 ID: B0CH22 (portable match)
name: 50S ribosomal protein L14
def: Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.
source: Brucella suis (strain ATCC 23445 / NCTC 10510) (taxid: 470137)
 ID: COG0093
name: RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
35-131
 ID: PF00238
score: 100.00 (hhsearch)
coverage over query:
35-131
 ID: GO:0070180 (portable match)
name: LSU rRNA binding
 PDB ID: 1whi chain A
(very confident match)
coverage over query:
35-131
1g030944m 168 ID: B0CH22 (portable match)
name: 50S ribosomal protein L14
def: Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.
source: Brucella suis (strain ATCC 23445 / NCTC 10510) (taxid: 470137)
 ID: COG0093
name: RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
49-168
 ID: PF00238
score: 100.00 (hhsearch)
coverage over query:
49-168
 ID: GO:0070180 (portable match)
name: LSU rRNA binding
 PDB ID: 3bbo chain M
(very confident match)
coverage over query:
49-168
1g030370m 178 ID: B0CH22 (portable match)
name: 50S ribosomal protein L14
def: Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.
source: Brucella suis (strain ATCC 23445 / NCTC 10510) (taxid: 470137)
 ID: COG0093
name: RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
59-178
 ID: PF00238
score: 100.00 (hhsearch)
coverage over query:
59-178
 ID: GO:0070180 (portable match)
name: LSU rRNA binding
 PDB ID: 3bbo chain M
(very confident match)
coverage over query:
59-178
1g030970m 168 ID: B0CH22 (portable match)
name: 50S ribosomal protein L14
def: Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.
source: Brucella suis (strain ATCC 23445 / NCTC 10510) (taxid: 470137)
 ID: COG0093
name: RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
49-168
 ID: PF00238
score: 100.00 (hhsearch)
coverage over query:
49-168
 ID: GO:0070180 (portable match)
name: LSU rRNA binding
 PDB ID: 3bbo chain M
(very confident match)
coverage over query:
49-168
1g031067m 166 ID: Q9A8U3 (portable match)
name: 50S ribosomal protein L14
def: Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.
source: Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)
 ID: COG0093
name: RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
47-166
 ID: PF00238
score: 100.00 (hhsearch)
coverage over query:
47-166
 ID: GO:0070180 (portable match)
name: LSU rRNA binding
 PDB ID: 3bbo chain M
(very confident match)
coverage over query:
47-166
1g031097m 166 ID: Q9A8U3 (portable match)
name: 50S ribosomal protein L14
def: Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.
source: Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)
 ID: COG0093
name: RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
47-166
 ID: PF00238
score: 100.00 (hhsearch)
coverage over query:
47-166
 ID: GO:0070180 (portable match)
name: LSU rRNA binding
 PDB ID: 3bbo chain M
(very confident match)
coverage over query:
47-166
1g037036m 87 no hit ID: COG0093
name: RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-87
 ID: PF00238
score: 100.00 (hhsearch)
coverage over query:
2-87
 no hit PDB ID: 3bbo chain M
(very confident match)
coverage over query:
1-87
1g029665m 190 ID: Q0DK10 (confident match)
name: 60S ribosomal protein L11
def: Binds to 5S ribosomal RNA.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0094
name: RplE Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-163
 ID: PF00673
score: 99.96 (hhsearch)
coverage over query:
74-147
 ID: GO:0005773 (very confident match)
name: vacuole
 PDB ID: 4a17 chain D
(very confident match)
coverage over query:
13-181
1g030174m 182 ID: Q0DK10 (confident match)
name: 60S ribosomal protein L11
def: Binds to 5S ribosomal RNA.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0094
name: RplE Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
3-155
 ID: PF00673
score: 99.96 (hhsearch)
coverage over query:
66-139
 ID: GO:0005773 (very confident match)
name: vacuole
 PDB ID: 3iz5 chain E
(very confident match)
coverage over query:
1-177
1g030128m 182 ID: Q0DK10 (confident match)
name: 60S ribosomal protein L11
def: Binds to 5S ribosomal RNA.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0094
name: RplE Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
3-155
 ID: PF00673
score: 99.96 (hhsearch)
coverage over query:
66-139
 ID: GO:0005773 (very confident match)
name: vacuole
 PDB ID: 3iz5 chain E
(very confident match)
coverage over query:
1-177
1g024440m 267 ID: O04603 (confident match)
name: 50S ribosomal protein L5, chloroplastic
def: Binds 5S rRNA, forms part of the central protuberance of the 50S subunit.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0094
name: RplE Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
61-239
 ID: PF00673
score: 100.00 (hhsearch)
coverage over query:
144-238
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3bbo chain H
(very confident match)
coverage over query:
47-260
1g028426m 209 no hit ID: COG0095
name: LplA Lipoate-protein ligase A [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
1-205
 ID: PF03099
score: 99.81 (hhsearch)
coverage over query:
2-114
 no hit PDB ID: 1vqz chain A
(very confident match)
coverage over query:
1-204
1g028411m 209 no hit ID: COG0095
name: LplA Lipoate-protein ligase A [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
1-205
 ID: PF03099
score: 99.81 (hhsearch)
coverage over query:
2-114
 no hit PDB ID: 1vqz chain A
(very confident match)
coverage over query:
1-204
1g032932m 130 ID: P42798 (confident match)
name: 40S ribosomal protein S15a-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0096
name: RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-130
 ID: PF00410
score: 100.00 (hhsearch)
coverage over query:
5-130
 ID: GO:0005618 (very confident match)
name: cell wall
 PDB ID: 2xzm chain H
(very confident match)
coverage over query:
1-130
1g032970m 130 ID: P42798 (confident match)
name: 40S ribosomal protein S15a-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0096
name: RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-130
 ID: PF00410
score: 100.00 (hhsearch)
coverage over query:
5-130
 ID: GO:0005618 (very confident match)
name: cell wall
 PDB ID: 2xzm chain H
(very confident match)
coverage over query:
1-130
1g032911m 130 ID: P42798 (confident match)
name: 40S ribosomal protein S15a-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0096
name: RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-130
 ID: PF00410
score: 100.00 (hhsearch)
coverage over query:
5-130
 ID: GO:0005618 (very confident match)
name: cell wall
 PDB ID: 2xzm chain H
(very confident match)
coverage over query:
1-130
1g032930m 130 ID: P42798 (confident match)
name: 40S ribosomal protein S15a-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0096
name: RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-130
 ID: PF00410
score: 100.00 (hhsearch)
coverage over query:
5-130
 ID: GO:0005739 (very confident match)
name: mitochondrion
 PDB ID: 2xzm chain H
(very confident match)
coverage over query:
1-130
1g032994m 129 ID: Q9M0E0 (confident match)
name: 40S ribosomal protein S15a-5
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0096
name: RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-129
 ID: PF00410
score: 100.00 (hhsearch)
coverage over query:
4-129
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2xzm chain H
(very confident match)
coverage over query:
1-129
1g032980m 129 ID: Q9M0E0 (confident match)
name: 40S ribosomal protein S15a-5
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0096
name: RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-129
 ID: PF00410
score: 100.00 (hhsearch)
coverage over query:
4-129
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2xzm chain H
(very confident match)
coverage over query:
1-129
1g033012m 129 ID: Q9M0E0 (confident match)
name: 40S ribosomal protein S15a-5
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0096
name: RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-129
 ID: PF00410
score: 100.00 (hhsearch)
coverage over query:
4-129
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2xzm chain H
(very confident match)
coverage over query:
1-129
1g033018m 129 ID: Q9M0E0 (confident match)
name: 40S ribosomal protein S15a-5
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0096
name: RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-129
 ID: PF00410
score: 100.00 (hhsearch)
coverage over query:
4-129
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2xzm chain H
(very confident match)
coverage over query:
1-129
1g033009m 129 ID: Q9M0E0 (confident match)
name: 40S ribosomal protein S15a-5
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0096
name: RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-129
 ID: PF00410
score: 100.00 (hhsearch)
coverage over query:
4-129
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2xzm chain H
(very confident match)
coverage over query:
1-129
1g038812m 84 ID: Q9M0E0 (portable match)
name: 40S ribosomal protein S15a-5
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0096
name: RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]
score:99.52 (hhsearch)
coverage over query:
43-84
 ID: PF00410
score: 99.09 (hhsearch)
coverage over query:
46-84
 ID: GO:0005773 (confident match)
name: vacuole
 PDB ID: 2xzm chain H
(very confident match)
coverage over query:
43-84
1g029052m 200 ID: P49210 (confident match)
name: 60S ribosomal protein L9
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0097
name: RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-170
 ID: PF00347
score: 99.75 (hhsearch)
coverage over query:
12-90
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2zkr chain e
(very confident match)
coverage over query:
1-170
1g029415m 194 ID: P49210 (confident match)
name: 60S ribosomal protein L9
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0097
name: RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
3-190
 ID: PF00347
score: 99.78 (hhsearch)
coverage over query:
12-90
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 3iz5 chain F
(very confident match)
coverage over query:
1-193
1g032626m 137 ID: P49210 (portable match)
name: 60S ribosomal protein L9
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0097
name: RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-133
 ID: PF00347
score: 99.85 (hhsearch)
coverage over query:
12-90
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2zkr chain e
(very confident match)
coverage over query:
1-133
1g029362m 194 ID: P49210 (confident match)
name: 60S ribosomal protein L9
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0097
name: RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-190
 ID: PF00347
score: 99.78 (hhsearch)
coverage over query:
12-90
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 3iz5 chain F
(very confident match)
coverage over query:
1-193
1g033325m 122 ID: P26861 (portable match)
name: 60S ribosomal protein L6, mitochondrial
def:
source: Marchantia polymorpha (taxid: 3197)
 ID: COG0097
name: RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
11-121
 ID: PF00347
score: 98.62 (hhsearch)
coverage over query:
32-106
 ID: GO:0006354 (portable match)
name: DNA-dependent transcription, elongation
 PDB ID: 3bbo chain I
(very confident match)
coverage over query:
12-121
1g046142m 132 no hit ID: COG0097
name: RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
13-131
 ID: PF00347
score: 98.64 (hhsearch)
coverage over query:
42-117
 ID: GO:0006354 (portable match)
name: DNA-dependent transcription, elongation
 PDB ID: 3bbo chain I
(very confident match)
coverage over query:
15-131
1g027306m 225 ID: O23049 (confident match)
name: 50S ribosomal protein L6, chloroplastic
def: This protein binds directly to 23S ribosomal RNA and is located at the aminoacyl-tRNA binding site of the peptidyltransferase center.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0097
name: RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
46-223
 ID: PF00347
score: 99.76 (hhsearch)
coverage over query:
56-127
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3bbo chain I
(very confident match)
coverage over query:
1-225
1g029116m 199 ID: O23049 (confident match)
name: 50S ribosomal protein L6, chloroplastic
def: This protein binds directly to 23S ribosomal RNA and is located at the aminoacyl-tRNA binding site of the peptidyltransferase center.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0097
name: RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
20-197
 ID: PF00347
score: 99.76 (hhsearch)
coverage over query:
30-101
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3bbo chain I
(very confident match)
coverage over query:
6-199
1g029373m 194 ID: P49210 (confident match)
name: 60S ribosomal protein L9
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0097
name: RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-190
 ID: PF00347
score: 99.77 (hhsearch)
coverage over query:
12-90
 ID: GO:0022625 (confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3iz5 chain F
(very confident match)
coverage over query:
1-193
1g013474m 442 no hit ID: COG0098
name: RpsE Ribosomal protein S5 [Translation, ribosomal structure and biogenesis]
score:99.84 (hhsearch)
coverage over query:
344-442
 ID: PF00333
score: 99.79 (hhsearch)
coverage over query:
387-442
 ID: GO:0005794 (portable match)
name: Golgi apparatus
 PDB ID: 1pkp chain A
(very confident match)
coverage over query:
386-442
1g024105m 272 ID: P31009 (confident match)
name: 40S ribosomal protein S2
def: Has a specific developmental role during oogenesis and a general role in protein synthesis as a component of the small ribosomal subunit.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0098
name: RpsE Ribosomal protein S5 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
52-242
 ID: PF03719
score: 99.90 (hhsearch)
coverage over query:
165-239
 ID: GO:0005618 (very confident match)
name: cell wall
 no hit
1g021869m 306 ID: P93014 (confident match)
name: 30S ribosomal protein S5, chloroplastic
def: Binds directly to 16S ribosomal RNA.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0098
name: RpsE Ribosomal protein S5 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
146-305
 ID: PF03719
score: 99.95 (hhsearch)
coverage over query:
225-298
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3bbn chain E
(very confident match)
coverage over query:
15-306
1g031812m 152 ID: P34788 (confident match)
name: 40S ribosomal protein S18
def: Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0099
name: RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
12-152
 ID: PF00416
score: 100.00 (hhsearch)
coverage over query:
14-142
 ID: GO:0005618 (very confident match)
name: cell wall
 PDB ID: 3iz6 chain M
(very confident match)
coverage over query:
1-152
1g031813m 152 ID: P34788 (confident match)
name: 40S ribosomal protein S18
def: Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0099
name: RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
12-152
 ID: PF00416
score: 100.00 (hhsearch)
coverage over query:
14-142
 ID: GO:0005618 (very confident match)
name: cell wall
 PDB ID: 3iz6 chain M
(very confident match)
coverage over query:
1-152
1g033487m 118 ID: P34788 (confident match)
name: 40S ribosomal protein S18
def: Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0099
name: RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
score:99.96 (hhsearch)
coverage over query:
12-118
 ID: PF00416
score: 99.94 (hhsearch)
coverage over query:
14-118
 ID: GO:0005618 (very confident match)
name: cell wall
 PDB ID: 3iz6 chain M
(very confident match)
coverage over query:
1-118
1g031787m 153 ID: P34788 (confident match)
name: 40S ribosomal protein S18
def: Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0099
name: RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
13-153
 ID: PF00416
score: 100.00 (hhsearch)
coverage over query:
15-143
 ID: GO:0005618 (very confident match)
name: cell wall
 PDB ID: 3iz6 chain M
(very confident match)
coverage over query:
2-153
1g033139m 126 ID: P34788 (confident match)
name: 40S ribosomal protein S18
def: Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0099
name: RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
12-123
 ID: PF00416
score: 99.96 (hhsearch)
coverage over query:
14-123
 ID: GO:0005618 (very confident match)
name: cell wall
 PDB ID: 3iz6 chain M
(very confident match)
coverage over query:
1-123
1g030930m 169 ID: P42732 (confident match)
name: 30S ribosomal protein S13, chloroplastic
def: Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0099
name: RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
47-165
 ID: PF00416
score: 100.00 (hhsearch)
coverage over query:
49-153
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3bbn chain M
(very confident match)
coverage over query:
3-104,115-156
1g031757m 153 ID: Q9CA19 (portable match)
name: Small ribosomal subunit protein S13, mitochondrial
def: Located at the top of the head of the small subunit, it contacts several helices of the 18S rRNA.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0099
name: RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
31-149
 ID: PF00416
score: 100.00 (hhsearch)
coverage over query:
33-137
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 3bbn chain M
(very confident match)
coverage over query:
9-88,99-140
1g033150m 126 no hit ID: COG0099
name: RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
score:99.94 (hhsearch)
coverage over query:
47-124
 ID: PF00416
score: 99.88 (hhsearch)
coverage over query:
49-123
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3bbn chain M
(very confident match)
coverage over query:
27-104
1g031952m 150 ID: P42036 (confident match)
name: 40S ribosomal protein S14-3
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0100
name: RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
14-147
 ID: PF00411
score: 100.00 (hhsearch)
coverage over query:
28-146
 ID: GO:0005730 (very confident match)
name: nucleolus
 PDB ID: 2xzm chain K
(very confident match)
coverage over query:
1-150
1g039298m 197 ID: P48150 (portable match)
name: 40S ribosomal protein S14
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0100
name: RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
54-194
 ID: PF00411
score: 100.00 (hhsearch)
coverage over query:
61-193
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2xzm chain K
(very confident match)
coverage over query:
34-161,176-197
1g043606m 101 ID: P06367 (portable match)
name: 40S ribosomal protein S14-A
def: Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0100
name: RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-98
 ID: PF00411
score: 100.00 (hhsearch)
coverage over query:
2-97
 ID: GO:0022627 (confident match)
name: cytosolic small ribosomal subunit
 PDB ID: 2xzm chain K
(very confident match)
coverage over query:
1-101
1g025294m 255 no hit ID: COG0100
name: RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
133-255
 ID: PF00411
score: 100.00 (hhsearch)
coverage over query:
136-254
 ID: GO:0044464 (portable match)
name: cell part
 PDB ID: 3bbn chain K
(very confident match)
coverage over query:
133-255
1g042710m 237 ID: Q6HNW5 (portable match)
name: tRNA pseudouridine synthase A 2
def: Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
source: Bacillus thuringiensis subsp. konkukian (strain 97-27) (taxid: 281309)
 ID: COG0101
name: TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
24-233
 ID: PF01416
score: 99.58 (hhsearch)
coverage over query:
170-233
 ID: GO:0000049 (portable match)
name: tRNA binding
 PDB ID: 1dj0 chain A
(very confident match)
coverage over query:
22-234
1g043662m 330 no hit ID: COG0101
name: TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
48-310
 ID: PF01416
score: 99.88 (hhsearch)
coverage over query:
194-301
 ID: GO:0000049 (portable match)
name: tRNA binding
 PDB ID: 1dj0 chain A
(very confident match)
coverage over query:
46-309
1g015260m 410 no hit ID: COG0101
name: TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
92-361
 ID: PF01416
score: 99.88 (hhsearch)
coverage over query:
243-354
 ID: GO:0003723 (portable match)
name: RNA binding
 PDB ID: 1dj0 chain A
(very confident match)
coverage over query:
90-166,187-359
1g013738m 437 no hit ID: COG0101
name: TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
92-361
 ID: PF01416
score: 99.88 (hhsearch)
coverage over query:
243-354
 ID: GO:0005737 (portable match)
name: cytoplasm
 PDB ID: 1dj0 chain A
(very confident match)
coverage over query:
90-166,187-359
1g045140m 468 no hit ID: COG0101
name: TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
59-462
 ID: PF01416
score: 99.82 (hhsearch)
coverage over query:
349-456
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1vs3 chain A
(very confident match)
coverage over query:
59-97,108-187,199-200
,331-457
1g009253m 539 ID: O22928 (portable match)
name: Putative tRNA pseudouridine synthase
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0101
name: TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
77-450
 ID: PF01416
score: 99.73 (hhsearch)
coverage over query:
362-446
 no hit PDB ID: 1vs3 chain A
(very confident match)
coverage over query:
77-253,361-446
1g016811m 382 no hit ID: COG0101
name: TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
57-363
 ID: PF01416
score: 99.86 (hhsearch)
coverage over query:
213-355
 no hit PDB ID: 1dj0 chain A
(very confident match)
coverage over query:
56-125,137-248,289-356
1g044732m 250 no hit ID: COG0101
name: TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-242
 ID: PF01416
score: 99.90 (hhsearch)
coverage over query:
121-240
 no hit PDB ID: 1dj0 chain A
(very confident match)
coverage over query:
1-75,105-159,172-241
1g029588m 191 ID: C1A3Z5 (portable match)
name: 50S ribosomal protein L13
def: This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
source: Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) (taxid: 379066)
 ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
12-144
 ID: PF00572
score: 100.00 (hhsearch)
coverage over query:
18-144
 ID: GO:0005761 (portable match)
name: mitochondrial ribosome
 PDB ID: 2ftc chain H
(very confident match)
coverage over query:
11-146
1g028816m 203 ID: O67722 (portable match)
name: 50S ribosomal protein L13
def: This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
source: Aquifex aeolicus (strain VF5) (taxid: 224324)
 ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
26-157
 ID: PF00572
score: 100.00 (hhsearch)
coverage over query:
30-156
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2ftc chain H
(very confident match)
coverage over query:
23-158
1g027797m 218 ID: B1XJI1 (portable match)
name: 50S ribosomal protein L13
def: This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
source: Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)
 ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
65-211
 ID: PF00572
score: 100.00 (hhsearch)
coverage over query:
82-208
 ID: GO:0009579 (confident match)
name: thylakoid
 PDB ID: 3bbo chain L
(very confident match)
coverage over query:
55-218
1g030391m 178 ID: B8HMT1 (portable match)
name: 50S ribosomal protein L13
def: This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
source: Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)
 ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
25-170
 ID: PF00572
score: 100.00 (hhsearch)
coverage over query:
42-168
 ID: GO:0009579 (confident match)
name: thylakoid
 PDB ID: 3bbo chain L
(very confident match)
coverage over query:
21-178
1g026665m 235 ID: P12629 (portable match)
name: 50S ribosomal protein L13, chloroplastic
def:
source: Spinacia oleracea (taxid: 3562)
 ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
91-224
 ID: PF00572
score: 100.00 (hhsearch)
coverage over query:
108-233
 ID: GO:0009579 (portable match)
name: thylakoid
 PDB ID: 3bbo chain L
(very confident match)
coverage over query:
1-225
1g028533m 208 ID: Q9SYL9 (portable match)
name: 50S ribosomal protein L13, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
91-207
 ID: PF00572
score: 100.00 (hhsearch)
coverage over query:
108-208
 ID: GO:0009579 (confident match)
name: thylakoid
 PDB ID: 3bbo chain L
(very confident match)
coverage over query:
1-208
1g026067m 244 ID: Q9SYL9 (confident match)
name: 50S ribosomal protein L13, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
91-237
 ID: PF00572
score: 100.00 (hhsearch)
coverage over query:
108-234
 ID: GO:0009579 (confident match)
name: thylakoid
 PDB ID: 3bbo chain L
(very confident match)
coverage over query:
1-244
1g031004m 167 no hit ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:99.96 (hhsearch)
coverage over query:
91-165
 ID: PF00572
score: 99.94 (hhsearch)
coverage over query:
108-167
 ID: GO:0009579 (portable match)
name: thylakoid
 PDB ID: 3bbo chain L
(very confident match)
coverage over query:
1-167
1g030330m 179 ID: Q9FKC0 (confident match)
name: 60S ribosomal protein L13a-4
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-133
 ID: PF00572
score: 100.00 (hhsearch)
coverage over query:
11-125
 ID: GO:0022625 (confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3iz5 chain K
(very confident match)
coverage over query:
1-159
1g028649m 206 ID: Q9FKC0 (confident match)
name: 60S ribosomal protein L13a-4
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-134
 ID: PF00572
score: 100.00 (hhsearch)
coverage over query:
11-126
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3iz5 chain K
(very confident match)
coverage over query:
1-206
1g032954m 130 ID: Q9FKC0 (confident match)
name: 60S ribosomal protein L13a-4
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-126
 ID: PF00572
score: 100.00 (hhsearch)
coverage over query:
11-126
 ID: GO:0022625 (confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3iz5 chain K
(very confident match)
coverage over query:
1-130
1g028623m 206 ID: Q9FKC0 (confident match)
name: 60S ribosomal protein L13a-4
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-134
 ID: PF00572
score: 100.00 (hhsearch)
coverage over query:
11-126
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3iz5 chain K
(very confident match)
coverage over query:
1-206
1g028707m 205 ID: Q9FKC0 (confident match)
name: 60S ribosomal protein L13a-4
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-134
 ID: PF00572
score: 100.00 (hhsearch)
coverage over query:
11-126
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3iz5 chain K
(very confident match)
coverage over query:
1-205
1g032581m 137 no hit ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
3-91
 ID: PF00572
score: 100.00 (hhsearch)
coverage over query:
2-90
 no hit PDB ID: 2zjr chain G
(very confident match)
coverage over query:
2-92
1g032125m 147 ID: Q42340 (confident match)
name: 40S ribosomal protein S16-3
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0103
name: RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-147
 ID: PF00380
score: 100.00 (hhsearch)
coverage over query:
15-147
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 3iz6 chain I
(very confident match)
coverage over query:
7-147
1g032049m 148 ID: Q42340 (confident match)
name: 40S ribosomal protein S16-3
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0103
name: RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
11-148
 ID: PF00380
score: 100.00 (hhsearch)
coverage over query:
16-148
 ID: GO:0009506 (confident match)
name: plasmodesma
 PDB ID: 3iz6 chain I
(very confident match)
coverage over query:
8-148
1g042358m 193 ID: P82278 (portable match)
name: 30S ribosomal protein S9, chloroplastic (Fragment)
def: Binds directly to 16S ribosomal RNA.
source: Spinacia oleracea (taxid: 3562)
 ID: COG0103
name: RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
97-193
 ID: PF00380
score: 100.00 (hhsearch)
coverage over query:
102-193
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3bbn chain I
(very confident match)
coverage over query:
26-193
1g021913m 305 no hit ID: COG0103
name: RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
score:99.92 (hhsearch)
coverage over query:
231-305
 ID: PF00380
score: 99.89 (hhsearch)
coverage over query:
236-305
 ID: GO:0044464 (portable match)
name: cell part
 PDB ID: 3bbn chain I
(very confident match)
coverage over query:
185-300
1g015193m 411 ID: Q10R17 (confident match)
name: Adenylosuccinate synthetase 1, chloroplastic
def: Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0104
name: PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-410
 ID: PF00709
score: 100.00 (hhsearch)
coverage over query:
2-410
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1dj2 chain A
(very confident match)
coverage over query:
2-411
1g011288m 489 ID: B9IJ21 (confident match)
name: Adenylosuccinate synthetase, chloroplastic
def: Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP.
source: Populus trichocarpa (taxid: 3694)
 ID: COG0104
name: PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
66-488
 ID: PF00709
score: 100.00 (hhsearch)
coverage over query:
67-488
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1dj2 chain A
(very confident match)
coverage over query:
53-489
1g045536m 438 ID: B9IJ21 (confident match)
name: Adenylosuccinate synthetase, chloroplastic
def: Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP.
source: Populus trichocarpa (taxid: 3694)
 ID: COG0104
name: PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
14-437
 ID: PF00709
score: 100.00 (hhsearch)
coverage over query:
16-437
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1dj2 chain A
(very confident match)
coverage over query:
4-438
1g032064m 148 no hit ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-144
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
29-146
 ID: GO:0004550 (portable match)
name: nucleoside diphosphate kinase activity
 PDB ID: 4fkx chain A
(very confident match)
coverage over query:
26-145
1g032631m 137 no hit ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-133
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
29-134
 ID: GO:0004550 (portable match)
name: nucleoside diphosphate kinase activity
 PDB ID: 4fkx chain A
(very confident match)
coverage over query:
27-133
1g032592m 137 no hit ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-133
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
29-134
 ID: GO:0004550 (portable match)
name: nucleoside diphosphate kinase activity
 PDB ID: 4fkx chain A
(very confident match)
coverage over query:
27-133
1g045706m 132 ID: B1WQB7 (portable match)
name: Nucleoside diphosphate kinase
def: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
source: Cyanothece sp. (strain ATCC 51142) (taxid: 43989)
 ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-116
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
1-119
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1s57 chain A
(very confident match)
coverage over query:
1-132
1g031851m 152 ID: Q39839 (portable match)
name: Nucleoside diphosphate kinase 1
def: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
source: Glycine max (taxid: 3847)
 ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-127
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
2-127
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1u8w chain A
(very confident match)
coverage over query:
1-132
1g033187m 125 ID: Q39839 (portable match)
name: Nucleoside diphosphate kinase 1
def: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
source: Glycine max (taxid: 3847)
 ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-122
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
2-122
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1pku chain A
(very confident match)
coverage over query:
1-121
1g032047m 148 ID: Q39839 (confident match)
name: Nucleoside diphosphate kinase 1
def: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
source: Glycine max (taxid: 3847)
 ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-133
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
2-133
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1u8w chain A
(very confident match)
coverage over query:
1-148
1g033807m 111 ID: Q39839 (portable match)
name: Nucleoside diphosphate kinase 1
def: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
source: Glycine max (taxid: 3847)
 ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-96
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
1-96
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1pku chain A
(very confident match)
coverage over query:
1-111
1g030583m 175 ID: Q9KCB9 (portable match)
name: Nucleoside diphosphate kinase
def: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
source: Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)
 ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
28-163
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
29-164
 ID: GO:0005882 (portable match)
name: intermediate filament
 PDB ID: 1k44 chain A
(very confident match)
coverage over query:
28-163
1g026399m 239 ID: Q8LAH8 (confident match)
name: Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial
def: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Shows the highest specificity towards GDP.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
89-221
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
90-224
 ID: GO:0008270 (confident match)
name: zinc ion binding
 PDB ID: 1w7w chain A
(very confident match)
coverage over query:
83-239
1g026953m 230 ID: Q8LAH8 (portable match)
name: Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial
def: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Shows the highest specificity towards GDP.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
89-215
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
90-216
 ID: GO:0008270 (confident match)
name: zinc ion binding
 PDB ID: 1pku chain A
(very confident match)
coverage over query:
89-216
1g026906m 231 ID: O64903 (confident match)
name: Nucleoside diphosphate kinase II, chloroplastic
def: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. May activate MPK3 and MPK6. May be involved in the regulation of cellular redox state and hydrogen peroxide-mediated MAP kinase signaling.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
83-215
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
84-218
 ID: GO:0009579 (confident match)
name: thylakoid
 PDB ID: 1s57 chain A
(very confident match)
coverage over query:
81-231
1g021156m 316 ID: O82782 (confident match)
name: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0106
name: HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
53-309
 ID: PF00977
score: 100.00 (hhsearch)
coverage over query:
55-299
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2agk chain A
(very confident match)
coverage over query:
55-310
1g045794m 578 ID: Q9SZ30 (confident match)
name: Imidazole glycerol phosphate synthase hisHF, chloroplastic
def: IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutamine amidotransferase domain provides the ammonia necessary to the cyclase domain to produce IGP and AICAR from PRFAR.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0107
name: HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
265-578
 ID: PF00977
score: 100.00 (hhsearch)
coverage over query:
269-561
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1jvn chain A
(very confident match)
coverage over query:
47-578
1g013465m 442 ID: Q818X6 (portable match)
name: Riboflavin biosynthesis protein RibBA
def: Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.
source: Bacillus cereus (strain ATCC 14579 / DSM 31) (taxid: 226900)
 ID: COG0108
name: RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
16-217
 ID: PF00926
score: 100.00 (hhsearch)
coverage over query:
19-213
 ID: GO:0005576 (confident match)
name: extracellular region
 PDB ID: 1g57 chain A
(very confident match)
coverage over query:
16-219
1g008849m 551 ID: P47924 (confident match)
name: Riboflavin biosynthesis protein ribBA, chloroplastic
def: Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0108
name: RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
107-326
 ID: PF00926
score: 100.00 (hhsearch)
coverage over query:
111-322
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1g57 chain A
(very confident match)
coverage over query:
108-196,213-328
1g013104m 449 ID: P47924 (portable match)
name: Riboflavin biosynthesis protein ribBA, chloroplastic
def: Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0108
name: RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
107-310
 ID: PF00926
score: 100.00 (hhsearch)
coverage over query:
111-306
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1g57 chain A
(very confident match)
coverage over query:
108-312
1g009423m 535 ID: P47924 (confident match)
name: Riboflavin biosynthesis protein ribBA, chloroplastic
def: Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0108
name: RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
107-310
 ID: PF00926
score: 100.00 (hhsearch)
coverage over query:
111-306
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1g57 chain A
(very confident match)
coverage over query:
107-312
1g008469m 564 ID: P47924 (confident match)
name: Riboflavin biosynthesis protein ribBA, chloroplastic
def: Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0108
name: RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
136-339
 ID: PF00926
score: 100.00 (hhsearch)
coverage over query:
140-335
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1g57 chain A
(very confident match)
coverage over query:
137-341
1g009355m 537 ID: Q818X6 (portable match)
name: Riboflavin biosynthesis protein RibBA
def: Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.
source: Bacillus cereus (strain ATCC 14579 / DSM 31) (taxid: 226900)
 ID: COG0108
name: RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
112-316
 ID: PF00926
score: 100.00 (hhsearch)
coverage over query:
116-312
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1g57 chain A
(very confident match)
coverage over query:
112-318
1g017544m 369 ID: Q818X6 (portable match)
name: Riboflavin biosynthesis protein RibBA
def: Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.
source: Bacillus cereus (strain ATCC 14579 / DSM 31) (taxid: 226900)
 ID: COG0108
name: RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
107-310
 ID: PF00926
score: 100.00 (hhsearch)
coverage over query:
111-306
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1g57 chain A
(very confident match)
coverage over query:
107-312
1g009309m 538 ID: Q818X6 (portable match)
name: Riboflavin biosynthesis protein RibBA
def: Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.
source: Bacillus cereus (strain ATCC 14579 / DSM 31) (taxid: 226900)
 ID: COG0108
name: RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
112-316
 ID: PF00926
score: 100.00 (hhsearch)
coverage over query:
116-312
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1g57 chain A
(very confident match)
coverage over query:
112-318
1g018982m 348 ID: Q9JZ77 (portable match)
name: 3,4-dihydroxy-2-butanone 4-phosphate synthase
def: Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
source: Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)
 ID: COG0108
name: RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
107-310
 ID: PF00926
score: 100.00 (hhsearch)
coverage over query:
111-306
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1g57 chain A
(very confident match)
coverage over query:
107-312
1g015045m 414 ID: O64886 (portable match)
name: Protoheme IX farnesyltransferase, mitochondrial
def: Converts protoheme IX and farnesyl diphosphate to heme O.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0109
name: CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
60-346
 ID: PF01040
score: 99.95 (hhsearch)
coverage over query:
77-262
 ID: GO:0006783 (portable match)
name: heme biosynthetic process
 no hit
1g014998m 414 ID: O64886 (portable match)
name: Protoheme IX farnesyltransferase, mitochondrial
def: Converts protoheme IX and farnesyl diphosphate to heme O.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0109
name: CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
60-346
 ID: PF01040
score: 99.95 (hhsearch)
coverage over query:
77-262
 ID: GO:0006783 (portable match)
name: heme biosynthetic process
 no hit
1g017603m 369 ID: Q38833 (confident match)
name: Chlorophyll synthase, chloroplastic
def: Involved in one of the last steps of the biosynthesis of chlorophyll a. Catalyzes the esterification of chlorophillide a or b with a preference for geranylgeranyldiphosphate (GGPP) rather than for phytyldiphosphate (PhyPP).
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0109
name: CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
80-368
 ID: PF01040
score: 99.96 (hhsearch)
coverage over query:
97-298
 ID: GO:0046408 (confident match)
name: chlorophyll synthetase activity
 PDB ID: 1vt4 chain I
(portable match)
coverage over query:
115-365
1g026038m 244 no hit ID: COG0109
name: CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
score:99.87 (hhsearch)
coverage over query:
97-236
 ID: PF01040
score: 99.50 (hhsearch)
coverage over query:
114-240
 no hit no hit
1g016162m 394 ID: Q9C9W5 (confident match)
name: Glycerate dehydrogenase HPR, peroxisomal
def: Catalyzes the NADH-dependent reduction of hydroxypyruvate into glycerate in the photorespiratory core cycle. Mediates fatty acid beta-oxidation in germinating seeds when malate dehydrogenase is absent.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
14-351
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
128-322
 ID: GO:0005576 (portable match)
name: extracellular region
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
15-392
1g015895m 398 ID: Q9C9W5 (confident match)
name: Glycerate dehydrogenase HPR, peroxisomal
def: Catalyzes the NADH-dependent reduction of hydroxypyruvate into glycerate in the photorespiratory core cycle. Mediates fatty acid beta-oxidation in germinating seeds when malate dehydrogenase is absent.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
13-351
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
128-322
 ID: GO:0005576 (portable match)
name: extracellular region
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
15-205,216-391
1g007040m 620 ID: O23702 (confident match)
name: C-terminal binding protein AN
def: Involved in controlling the equilibrium between tubular and stacked structures in the Golgi complex (By similarity). Required for cortical microtubules (MTs) arrangement that confers cell shape. Regulates the width of leaves by controlling the polar elongation of leaf cells. Involved in the regulation of trichome branching. Seems to not be able to regulate gene transcription. Regulates epidermal cell divisions and elongation in a non-cell-autonomous manner (regulated by subepidermal cells), but regulates epidermal cell polarity, shape, trichome branching and elongation in a cell-autonomous manner.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
54-342
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
123-304
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
19-339
1g006758m 632 ID: O23702 (confident match)
name: C-terminal binding protein AN
def: Involved in controlling the equilibrium between tubular and stacked structures in the Golgi complex (By similarity). Required for cortical microtubules (MTs) arrangement that confers cell shape. Regulates the width of leaves by controlling the polar elongation of leaf cells. Involved in the regulation of trichome branching. Seems to not be able to regulate gene transcription. Regulates epidermal cell divisions and elongation in a non-cell-autonomous manner (regulated by subepidermal cells), but regulates epidermal cell polarity, shape, trichome branching and elongation in a cell-autonomous manner.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
54-342
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
123-304
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
18-339
1g042102m 317 ID: Q9CA90 (confident match)
name: Glyoxylate/hydroxypyruvate reductase A HPR2
def: Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate in the cytoplasm, thus providing a cytosolic bypass to the photorespiratory core cycle. Mostly active in the presence of NADPH and hydroxypyruvate.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
6-313
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
113-285
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3ba1 chain A
(very confident match)
coverage over query:
7-317
1g045521m 204 ID: Q9CA90 (portable match)
name: Glyoxylate/hydroxypyruvate reductase A HPR2
def: Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate in the cytoplasm, thus providing a cytosolic bypass to the photorespiratory core cycle. Mostly active in the presence of NADPH and hydroxypyruvate.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-199
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
55-172
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3ba1 chain A
(very confident match)
coverage over query:
1-204
1g021361m 313 ID: Q9CA90 (portable match)
name: Glyoxylate/hydroxypyruvate reductase A HPR2
def: Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate in the cytoplasm, thus providing a cytosolic bypass to the photorespiratory core cycle. Mostly active in the presence of NADPH and hydroxypyruvate.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-310
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
109-281
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3ba1 chain A
(very confident match)
coverage over query:
1-313
1g021388m 313 ID: Q9CA90 (confident match)
name: Glyoxylate/hydroxypyruvate reductase A HPR2
def: Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate in the cytoplasm, thus providing a cytosolic bypass to the photorespiratory core cycle. Mostly active in the presence of NADPH and hydroxypyruvate.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-309
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
109-281
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3ba1 chain A
(very confident match)
coverage over query:
1-313
1g028302m 210 no hit ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
12-210
 ID: PF02826
score: 99.86 (hhsearch)
coverage over query:
121-210
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
11-210
1g027847m 218 no hit ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
11-214
 ID: PF02826
score: 99.88 (hhsearch)
coverage over query:
121-215
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 2nac chain A
(confident match)
coverage over query:
39-184
1g027226m 226 no hit ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
11-221
 ID: PF02826
score: 99.88 (hhsearch)
coverage over query:
121-221
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
11-219
1g028330m 210 no hit ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
12-210
 ID: PF02826
score: 99.86 (hhsearch)
coverage over query:
121-210
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
11-210
1g028310m 210 no hit ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
12-210
 ID: PF02826
score: 99.86 (hhsearch)
coverage over query:
121-210
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
11-210
1g044647m 93 no hit ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-88
 ID: PF02826
score: 99.93 (hhsearch)
coverage over query:
1-59
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
1-89
1g028314m 210 no hit ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
12-210
 ID: PF02826
score: 99.86 (hhsearch)
coverage over query:
121-210
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
11-210
1g006864m 628 ID: O04130 (confident match)
name: D-3-phosphoglycerate dehydrogenase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
89-409
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
195-370
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2g76 chain A
(very confident match)
coverage over query:
88-399
1g046427m 595 ID: O04130 (portable match)
name: D-3-phosphoglycerate dehydrogenase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
52-370
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
158-333
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2g76 chain A
(very confident match)
coverage over query:
52-362
1g006212m 656 ID: O04130 (confident match)
name: D-3-phosphoglycerate dehydrogenase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
89-408
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
195-370
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2g76 chain A
(very confident match)
coverage over query:
88-399
1g027408m 223 ID: Q9S7E4 (portable match)
name: Formate dehydrogenase, mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-206
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
1-179
 ID: GO:0009579 (portable match)
name: thylakoid
 PDB ID: 3jtm chain A
(very confident match)
coverage over query:
1-223
1g021995m 304 ID: Q9S7E4 (portable match)
name: Formate dehydrogenase, mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
22-287
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
81-260
 ID: GO:0009579 (confident match)
name: thylakoid
 PDB ID: 2j6i chain A
(very confident match)
coverage over query:
24-303
1g026360m 240 ID: Q9S7E4 (portable match)
name: Formate dehydrogenase, mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-208
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
1-179
 ID: GO:0009579 (portable match)
name: thylakoid
 PDB ID: 2j6i chain A
(very confident match)
coverage over query:
1-212
1g027577m 221 ID: Q9S7E4 (portable match)
name: Formate dehydrogenase, mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-204
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
1-179
 ID: GO:0009579 (portable match)
name: thylakoid
 PDB ID: 3jtm chain A
(very confident match)
coverage over query:
1-221
1g027425m 223 ID: Q9S7E4 (portable match)
name: Formate dehydrogenase, mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-206
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
1-179
 ID: GO:0009579 (portable match)
name: thylakoid
 PDB ID: 3jtm chain A
(very confident match)
coverage over query:
1-223
1g043239m 286 ID: Q9LE33 (portable match)
name: Glyoxylate/hydroxypyruvate reductase HPR3
def: Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate. Mostly active in the presence of NADPH and glyoxylate.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
39-286
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
112-284
 ID: GO:0016618 (portable match)
name: hydroxypyruvate reductase activity
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
14-286
1g024297m 269 no hit ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
11-269
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
121-269
 ID: GO:0044710 (portable match)
name: single-organism metabolic process
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
10-191,210-269
1g020160m 330 ID: B1L765 (portable match)
name: Glyoxylate reductase
def:
source: Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
10-324
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
122-295
 ID: GO:0055114 (confident match)
name: oxidation-reduction process
 PDB ID: 3ba1 chain A
(very confident match)
coverage over query:
9-327
1g016620m 386 ID: Q9C9W5 (confident match)
name: Glycerate dehydrogenase HPR, peroxisomal
def: Catalyzes the NADH-dependent reduction of hydroxypyruvate into glycerate in the photorespiratory core cycle. Mediates fatty acid beta-oxidation in germinating seeds when malate dehydrogenase is absent.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
13-351
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
128-322
 ID: GO:0055114 (portable match)
name: oxidation-reduction process
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
15-204,215-381
1g019336m 342 ID: Q9C9W5 (confident match)
name: Glycerate dehydrogenase HPR, peroxisomal
def: Catalyzes the NADH-dependent reduction of hydroxypyruvate into glycerate in the photorespiratory core cycle. Mediates fatty acid beta-oxidation in germinating seeds when malate dehydrogenase is absent.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
13-341
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
128-322
 ID: GO:0055114 (portable match)
name: oxidation-reduction process
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
14-210,223-341
1g020301m 328 ID: Q9C9W5 (confident match)
name: Glycerate dehydrogenase HPR, peroxisomal
def: Catalyzes the NADH-dependent reduction of hydroxypyruvate into glycerate in the photorespiratory core cycle. Mediates fatty acid beta-oxidation in germinating seeds when malate dehydrogenase is absent.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
14-326
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
128-322
 ID: GO:0055114 (portable match)
name: oxidation-reduction process
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
14-326
1g022672m 294 ID: Q9C9W5 (confident match)
name: Glycerate dehydrogenase HPR, peroxisomal
def: Catalyzes the NADH-dependent reduction of hydroxypyruvate into glycerate in the photorespiratory core cycle. Mediates fatty acid beta-oxidation in germinating seeds when malate dehydrogenase is absent.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-259
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
36-230
 ID: GO:0055114 (portable match)
name: oxidation-reduction process
 PDB ID: 2cuk chain A
(very confident match)
coverage over query:
1-110,128-260
1g019328m 342 ID: Q9C9W5 (confident match)
name: Glycerate dehydrogenase HPR, peroxisomal
def: Catalyzes the NADH-dependent reduction of hydroxypyruvate into glycerate in the photorespiratory core cycle. Mediates fatty acid beta-oxidation in germinating seeds when malate dehydrogenase is absent.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
13-341
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
128-322
 ID: GO:0055114 (portable match)
name: oxidation-reduction process
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
14-210,223-341
1g017490m 370 no hit ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
36-365
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
145-336
 ID: GO:0055114 (portable match)
name: oxidation-reduction process
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
36-214,234-365
1g019092m 346 no hit ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
12-341
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
121-312
 ID: GO:0055114 (portable match)
name: oxidation-reduction process
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
10-191,210-341
1g035615m 223 no hit ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-221
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
43-216
 ID: GO:0055114 (portable match)
name: oxidation-reduction process
 PDB ID: 3ba1 chain A
(very confident match)
coverage over query:
3-221
1g019081m 346 no hit ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
12-341
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
121-312
 ID: GO:0055114 (portable match)
name: oxidation-reduction process
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
10-191,210-341
1g045269m 99 no hit ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-94
 ID: PF02826
score: 99.96 (hhsearch)
coverage over query:
1-65
 ID: GO:0055114 (portable match)
name: oxidation-reduction process
 PDB ID: 4g2n chain A
(very confident match)
coverage over query:
1-96
1g019082m 346 no hit ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
12-341
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
121-312
 ID: GO:0055114 (portable match)
name: oxidation-reduction process
 PDB ID: 1ygy chain A
(very confident match)
coverage over query:
10-191,210-341
1g007512m 600 ID: O04130 (portable match)
name: D-3-phosphoglycerate dehydrogenase, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
57-376
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
163-338
 no hit PDB ID: 2g76 chain A
(very confident match)
coverage over query:
56-367
1g018318m 358 ID: A9WI58 (portable match)
name: Serine hydroxymethyltransferase
def: Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
source: Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) (taxid: 324602)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
10-358
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
12-358
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
3-357
1g012104m 471 ID: Q758F0 (portable match)
name: Serine hydroxymethyltransferase, mitochondrial
def: Interconversion of serine and glycine.
source: Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
10-461
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
12-412
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 3n0l chain A
(very confident match)
coverage over query:
11-259,274-419,438-461
1g013217m 447 ID: A9WI58 (portable match)
name: Serine hydroxymethyltransferase
def: Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
source: Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) (taxid: 324602)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-446
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
1-391
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
3-447
1g010008m 520 ID: O62585 (portable match)
name: Serine hydroxymethyltransferase, cytosolic
def: Interconversion of serine and glycine.
source: Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
72-519
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
74-464
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
68-520
1g009680m 529 ID: O62585 (portable match)
name: Serine hydroxymethyltransferase, cytosolic
def: Interconversion of serine and glycine.
source: Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
81-528
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
83-473
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
77-529
1g009673m 529 ID: O62585 (portable match)
name: Serine hydroxymethyltransferase, cytosolic
def: Interconversion of serine and glycine.
source: Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
81-528
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
83-473
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
77-529
1g032233m 144 ID: P49358 (portable match)
name: Serine hydroxymethyltransferase 2, mitochondrial
def: Interconversion of serine and glycine.
source: Flaveria pringlei (taxid: 4226)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-134
 ID: PF00464
score: 99.96 (hhsearch)
coverage over query:
1-81
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
2-136
1g022458m 297 ID: P49358 (portable match)
name: Serine hydroxymethyltransferase 2, mitochondrial
def: Interconversion of serine and glycine.
source: Flaveria pringlei (taxid: 4226)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-285
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
2-286
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
1-284
1g010058m 519 ID: P49358 (portable match)
name: Serine hydroxymethyltransferase 2, mitochondrial
def: Interconversion of serine and glycine.
source: Flaveria pringlei (taxid: 4226)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
55-508
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
57-455
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3n0l chain A
(very confident match)
coverage over query:
56-303,317-463,486-509
1g032268m 144 ID: P49358 (portable match)
name: Serine hydroxymethyltransferase 2, mitochondrial
def: Interconversion of serine and glycine.
source: Flaveria pringlei (taxid: 4226)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-134
 ID: PF00464
score: 99.96 (hhsearch)
coverage over query:
1-81
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 3ou5 chain A
(very confident match)
coverage over query:
1-137
1g034072m 104 ID: P49358 (portable match)
name: Serine hydroxymethyltransferase 2, mitochondrial
def: Interconversion of serine and glycine.
source: Flaveria pringlei (taxid: 4226)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-89
 ID: PF00464
score: 99.96 (hhsearch)
coverage over query:
1-81
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 3ou5 chain A
(very confident match)
coverage over query:
1-95
1g032257m 144 ID: P49358 (portable match)
name: Serine hydroxymethyltransferase 2, mitochondrial
def: Interconversion of serine and glycine.
source: Flaveria pringlei (taxid: 4226)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-134
 ID: PF00464
score: 99.96 (hhsearch)
coverage over query:
1-81
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
2-136
1g022463m 297 ID: P49358 (portable match)
name: Serine hydroxymethyltransferase 2, mitochondrial
def: Interconversion of serine and glycine.
source: Flaveria pringlei (taxid: 4226)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-285
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
2-286
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
1-284
1g014724m 419 ID: Q39V87 (portable match)
name: Serine hydroxymethyltransferase
def: Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
source: Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
81-415
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
83-415
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
75-415
1g016668m 385 ID: Q48CP3 (portable match)
name: Serine hydroxymethyltransferase 2
def: Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
source: Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) (taxid: 264730)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
81-383
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
83-383
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
76-383
1g018300m 358 ID: Q8R887 (portable match)
name: Serine hydroxymethyltransferase
def: Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
source: Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
81-357
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
83-357
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
76-357
1g022564m 295 ID: Q9SZJ5 (portable match)
name: Serine hydroxymethyltransferase, mitochondrial
def: Interconversion of serine and glycine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
25-272
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
27-285
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
18-275
1g023191m 286 ID: Q9SZJ5 (portable match)
name: Serine hydroxymethyltransferase, mitochondrial
def: Interconversion of serine and glycine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
25-275
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
28-284
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
19-274
1g018401m 356 ID: Q9SZJ5 (confident match)
name: Serine hydroxymethyltransferase, mitochondrial
def: Interconversion of serine and glycine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
25-319
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
27-319
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
17-318
1g018231m 359 ID: Q9SZJ5 (confident match)
name: Serine hydroxymethyltransferase, mitochondrial
def: Interconversion of serine and glycine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
25-323
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
27-322
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
19-322
1g032537m 138 ID: Q9SZJ5 (portable match)
name: Serine hydroxymethyltransferase, mitochondrial
def: Interconversion of serine and glycine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
5-128
 ID: PF00464
score: 99.91 (hhsearch)
coverage over query:
5-75
 ID: GO:0009570 (portable match)
name: chloroplast stroma
 PDB ID: 3ou5 chain A
(very confident match)
coverage over query:
5-131
1g015647m 403 ID: Q3A934 (portable match)
name: Serine hydroxymethyltransferase
def: Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
source: Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
130-395
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
132-395
 ID: GO:0046686 (portable match)
name: response to cadmium ion
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
124-379
1g015609m 403 ID: Q3A934 (portable match)
name: Serine hydroxymethyltransferase
def: Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
source: Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
130-395
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
132-395
 ID: GO:0046686 (portable match)
name: response to cadmium ion
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
124-379
1g015658m 403 ID: Q3A934 (portable match)
name: Serine hydroxymethyltransferase
def: Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
source: Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
130-395
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
132-395
 ID: GO:0046686 (portable match)
name: response to cadmium ion
 PDB ID: 1rv3 chain A
(very confident match)
coverage over query:
124-379
1g014237m 428 ID: Q9SFH9 (confident match)
name: Delta-aminolevulinic acid dehydratase, chloroplastic
def: Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0113
name: HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
100-425
 ID: PF00490
score: 100.00 (hhsearch)
coverage over query:
102-423
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3obk chain A
(very confident match)
coverage over query:
89-425
1g014234m 428 ID: Q9SFH9 (confident match)
name: Delta-aminolevulinic acid dehydratase, chloroplastic
def: Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0113
name: HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
100-425
 ID: PF00490
score: 100.00 (hhsearch)
coverage over query:
102-423
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3obk chain A
(very confident match)
coverage over query:
89-425
1g014017m 432 ID: Q9SFH9 (confident match)
name: Delta-aminolevulinic acid dehydratase, chloroplastic
def: Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0113
name: HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
100-429
 ID: PF00490
score: 100.00 (hhsearch)
coverage over query:
102-427
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3obk chain A
(very confident match)
coverage over query:
89-429
1g020319m 327 ID: Q9SFH9 (portable match)
name: Delta-aminolevulinic acid dehydratase, chloroplastic
def: Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0113
name: HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
101-327
 ID: PF00490
score: 100.00 (hhsearch)
coverage over query:
103-327
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3obk chain A
(very confident match)
coverage over query:
89-327
1g013861m 435 ID: Q9SFH9 (confident match)
name: Delta-aminolevulinic acid dehydratase, chloroplastic
def: Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0113
name: HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
100-432
 ID: PF00490
score: 100.00 (hhsearch)
coverage over query:
103-430
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3obk chain A
(very confident match)
coverage over query:
89-432
1g015619m 403 ID: P08417 (confident match)
name: Fumarate hydratase, mitochondrial
def:
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0114
name: FumC Fumarase [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
1-401
 ID: PF00206
score: 100.00 (hhsearch)
coverage over query:
2-281
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3gtd chain A
(very confident match)
coverage over query:
2-400
1g014483m 423 ID: P93033 (confident match)
name: Fumarate hydratase 1, mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0114
name: FumC Fumarase [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
1-422
 ID: PF00206
score: 100.00 (hhsearch)
coverage over query:
3-301
 ID: GO:0006979 (very confident match)
name: response to oxidative stress
 PDB ID: 3gtd chain A
(very confident match)
coverage over query:
1-420
1g014519m 423 ID: P93033 (confident match)
name: Fumarate hydratase 1, mitochondrial
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0114
name: FumC Fumarase [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
1-422
 ID: PF00206
score: 100.00 (hhsearch)
coverage over query:
3-301
 ID: GO:0006979 (very confident match)
name: response to oxidative stress
 PDB ID: 3gtd chain A
(very confident match)
coverage over query:
1-420
1g011379m 487 ID: Q9FI53 (confident match)
name: Fumarate hydratase 2, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0114
name: FumC Fumarase [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
36-486
 ID: PF00206
score: 100.00 (hhsearch)
coverage over query:
45-375
 ID: GO:0006979 (confident match)
name: response to oxidative stress
 PDB ID: 3gtd chain A
(very confident match)
coverage over query:
33-484
1g010951m 497 ID: P14408 (confident match)
name: Fumarate hydratase, mitochondrial
def:
source: Rattus norvegicus (taxid: 10116)
 ID: COG0114
name: FumC Fumarase [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
36-496
 ID: PF00206
score: 100.00 (hhsearch)
coverage over query:
45-375
 ID: GO:0045335 (confident match)
name: phagocytic vesicle
 PDB ID: 3gtd chain A
(very confident match)
coverage over query:
33-494
1g010908m 497 ID: P14408 (confident match)
name: Fumarate hydratase, mitochondrial
def:
source: Rattus norvegicus (taxid: 10116)
 ID: COG0114
name: FumC Fumarase [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
36-496
 ID: PF00206
score: 100.00 (hhsearch)
coverage over query:
45-375
 ID: GO:0045335 (confident match)
name: phagocytic vesicle
 PDB ID: 3gtd chain A
(very confident match)
coverage over query:
33-494
1g013594m 439 ID: Q9FI53 (confident match)
name: Fumarate hydratase 2, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0114
name: FumC Fumarase [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
36-438
 ID: PF00206
score: 100.00 (hhsearch)
coverage over query:
45-375
 ID: GO:0045335 (confident match)
name: phagocytic vesicle
 PDB ID: 3gtd chain A
(very confident match)
coverage over query:
33-438
1g013614m 439 ID: Q9FI53 (confident match)
name: Fumarate hydratase 2, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0114
name: FumC Fumarase [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
36-438
 ID: PF00206
score: 100.00 (hhsearch)
coverage over query:
45-375
 ID: GO:0045335 (confident match)
name: phagocytic vesicle
 PDB ID: 3gtd chain A
(very confident match)
coverage over query:
33-438
1g020676m 323 no hit ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
5-314
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
46-315
 ID: GO:0003824 (portable match)
name: catalytic activity
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
8-66,88-103,117-133
,151-233,253-315
1g019986m 332 ID: Q9M439 (confident match)
name: Branched-chain-amino-acid aminotransferase 2, chloroplastic
def: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
25-320
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
69-313
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
26-128,139-329
1g016343m 391 ID: Q9M439 (confident match)
name: Branched-chain-amino-acid aminotransferase 2, chloroplastic
def: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
85-380
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
129-372
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
74-187,198-388
1g023788m 277 ID: Q9M439 (portable match)
name: Branched-chain-amino-acid aminotransferase 2, chloroplastic
def: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
3-265
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
14-258
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
2-274
1g021564m 311 ID: Q9M439 (portable match)
name: Branched-chain-amino-acid aminotransferase 2, chloroplastic
def: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
85-305
 ID: PF01063
score: 99.91 (hhsearch)
coverage over query:
129-305
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3u0g chain A
(very confident match)
coverage over query:
81-307
1g024053m 273 ID: Q9M439 (portable match)
name: Branched-chain-amino-acid aminotransferase 2, chloroplastic
def: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:99.97 (hhsearch)
coverage over query:
85-272
 ID: PF01063
score: 99.51 (hhsearch)
coverage over query:
129-272
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3u0g chain A
(very confident match)
coverage over query:
82-272
1g036241m 367 ID: Q9M439 (confident match)
name: Branched-chain-amino-acid aminotransferase 2, chloroplastic
def: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
82-367
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
128-366
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
85-366
1g019544m 339 ID: Q9M439 (portable match)
name: Branched-chain-amino-acid aminotransferase 2, chloroplastic
def: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
22-327
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
76-320
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
23-135,146-336
1g016272m 392 ID: Q9M439 (confident match)
name: Branched-chain-amino-acid aminotransferase 2, chloroplastic
def: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
85-381
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
129-373
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
72-388
1g020028m 332 ID: Q9M439 (confident match)
name: Branched-chain-amino-acid aminotransferase 2, chloroplastic
def: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
25-320
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
69-313
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
26-128,139-329
1g022854m 291 ID: Q9M439 (portable match)
name: Branched-chain-amino-acid aminotransferase 2, chloroplastic
def: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
85-289
 ID: PF01063
score: 99.84 (hhsearch)
coverage over query:
129-290
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3u0g chain A
(very confident match)
coverage over query:
81-289
1g021543m 311 ID: Q9M439 (portable match)
name: Branched-chain-amino-acid aminotransferase 2, chloroplastic
def: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
85-305
 ID: PF01063
score: 99.91 (hhsearch)
coverage over query:
129-305
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3u0g chain A
(very confident match)
coverage over query:
81-307
1g019527m 339 ID: Q9M439 (portable match)
name: Branched-chain-amino-acid aminotransferase 2, chloroplastic
def: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
22-327
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
76-320
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
23-135,146-336
1g020036m 332 ID: Q9M439 (confident match)
name: Branched-chain-amino-acid aminotransferase 2, chloroplastic
def: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
25-320
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
69-313
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
26-128,139-329
1g021518m 311 ID: Q9M439 (portable match)
name: Branched-chain-amino-acid aminotransferase 2, chloroplastic
def: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
85-305
 ID: PF01063
score: 99.91 (hhsearch)
coverage over query:
129-305
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3u0g chain A
(very confident match)
coverage over query:
81-307
1g020003m 332 ID: Q9M439 (confident match)
name: Branched-chain-amino-acid aminotransferase 2, chloroplastic
def: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
25-320
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
69-313
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
26-128,139-329
1g047617m 337 ID: Q9M439 (portable match)
name: Branched-chain-amino-acid aminotransferase 2, chloroplastic
def: Converts 2-oxo acids to branched-chain amino acids. Acts on leucine, isoleucine and valine.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
31-325
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
77-318
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
34-136,147-334
1g028343m 210 no hit ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
1-198
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
2-191
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
1-207
1g027144m 227 no hit ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:99.90 (hhsearch)
coverage over query:
85-216
 ID: PF01063
score: 98.41 (hhsearch)
coverage over query:
129-197
 ID: GO:0005829 (portable match)
name: cytosol
 PDB ID: 4dqn chain A
(very confident match)
coverage over query:
59-215
1g021000m 318 no hit ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
5-315
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
46-318
 ID: GO:0008152 (portable match)
name: metabolic process
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
8-66,88-104,118-132
,150-233,253-317
1g021015m 318 no hit ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
5-315
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
46-318
 ID: GO:0008152 (portable match)
name: metabolic process
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
8-66,88-104,118-132
,150-233,253-317
1g020660m 323 no hit ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
5-314
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
46-315
 ID: GO:0008152 (portable match)
name: metabolic process
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
8-66,88-103,117-133
,151-233,253-315
1g046821m 361 no hit ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
102-353
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
143-347
 ID: GO:0008152 (portable match)
name: metabolic process
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
105-354
1g020618m 323 no hit ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
5-314
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
46-315
 ID: GO:0008152 (portable match)
name: metabolic process
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
8-66,88-103,117-133
,151-233,253-315
1g017872m 365 no hit ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
5-358
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
46-352
 ID: GO:0008152 (portable match)
name: metabolic process
 PDB ID: 3csw chain A
(very confident match)
coverage over query:
8-67,89-102,116-133
,151-233,253-315
,334-358
1g016536m 387 ID: Q8L493 (portable match)
name: Branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
96-378
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
135-370
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2zgi chain A
(very confident match)
coverage over query:
96-196,211-354
1g020923m 319 ID: Q8L493 (confident match)
name: Branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
28-309
 ID: PF01063
score: 100.00 (hhsearch)
coverage over query:
67-302
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 2zgi chain A
(very confident match)
coverage over query:
28-125,140-286
Browse the full list     
  

A simple query using a name or keyword can be done using the search box below. For protein ID search, please use name format like '1g002345m'. For GO term search, please use name format like 'GO:0005737'. For COG search, please use name format like 'COG3063'. For Pfam search, please use name format like 'PF06418'. You can also input keywords like 'SUI1 Translation initiation factor 1'