GO annotation search and functional categorization

Among 46147 Citrus sinensis proteins, 32986 are assigned at least on GO term. Predicted GO terms with confidence scores greater than 10 points, 8 points and 6 points are considered to be 'very confident', 'confident' and 'probable', respectively. We further mapped the predicted GO terms to Plant GO slim, which presents a general categorization of GO content and is useful for the broad protein function classification.

The functional categorization listing is shown below. Clicking on the number of GO annotation count navigates to the page that shows the list of predicted GO terms associated with corresponding GO slim term

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biological_process
GOID
Link to GO
 Functional Category GO Annotation Count
to see
GO terms
GO:0009987 other cellular process 1854
GO:0008150 other biological_process 1824
GO:0016043 cellular component organization 649
GO:0009058 biosynthetic process 615
GO:0007275 multicellular organismal development 554
GO:0006810 transport 512
GO:0006139 nucleobase-containing compound metabolic process 417
GO:0009653 anatomical structure morphogenesis 354
GO:0009056 catabolic process 347
GO:0030154 cell differentiation 312
GO:0000003 reproduction 291
GO:0008152 other metabolic process 286
GO:0006950 response to stress 268
GO:0006629 lipid metabolic process 253
GO:0007165 signal transduction 179
GO:0007049 cell cycle 176
GO:0006464 cellular protein modification process 175
GO:0005975 carbohydrate metabolic process 166
GO:0009628 response to abiotic stimulus 150
GO:0006259 DNA metabolic process 130
GO:0009719 response to endogenous stimulus 116
GO:0009790 embryo development 106
GO:0009791 post-embryonic development 96
GO:0019538 protein metabolic process 84
GO:0009607 response to biotic stimulus 67
GO:0019725 cellular homeostasis 67
GO:0019748 secondary metabolic process 56
GO:0009991 response to extracellular stimulus 55
GO:0007154 cell communication 50
GO:0007610 behavior 47
GO:0040029 regulation of gene expression, epigenetic 46
GO:0009605 response to external stimulus 46
GO:0007267 cell-cell signaling 45
GO:0008219 cell death 42
GO:0006412 translation 41
GO:0006091 generation of precursor metabolites and energy 40
GO:0009908 flower development 40
GO:0040007 growth 33
GO:0016049 cell growth 19
GO:0015979 photosynthesis 15
GO:0009856 pollination 7
GO:0009606 tropism 5
GO:0016265 death 3
GO:0009838 abscission 3
GO:0009875 pollen-pistil interaction 2
GO:0009835 fruit ripening 1
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cellular_component
GOID
Link to GO
 Functional Category GO Annotation Count
to see
GO terms
GO:0005737 other cytoplasm 207
GO:0016020 other membrane 206
GO:0005622 other intracellular 180
GO:0005634 nucleus 135
GO:0005623 cell 91
GO:0005856 cytoskeleton 89
GO:0005654 nucleoplasm 74
GO:0005575 other cellular_component 68
GO:0005886 plasma membrane 59
GO:0005739 mitochondrion 55
GO:0009536 plastid 48
GO:0005783 endoplasmic reticulum 41
GO:0005773 vacuole 29
GO:0009579 thylakoid 23
GO:0005794 Golgi apparatus 21
GO:0005829 cytosol 18
GO:0005730 nucleolus 17
GO:0005768 endosome 16
GO:0005840 ribosome 13
GO:0005576 extracellular region 12
GO:0005635 nuclear envelope 9
GO:0005764 lysosome 9
GO:0005618 cell wall 7
GO:0030312 external encapsulating structure 5
GO:0005777 peroxisome 4
GO:0005578 proteinaceous extracellular matrix 3
GO:0005615 extracellular space 3
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molecular_function
GOID
Link to GO
 Functional Category GO Annotation Count
to see
GO terms
GO:0003824 other catalytic activity 871
GO:0016740 transferase activity 486
GO:0016787 hydrolase activity 428
GO:0005215 transporter activity 355
GO:0005515 protein binding 186
GO:0005488 other binding 137
GO:0016301 kinase activity 119
GO:0030234 enzyme regulator activity 75
GO:0003677 DNA binding 60
GO:0003674 other molecular_function 48
GO:0005102 receptor binding 47
GO:0003723 RNA binding 44
GO:0008289 lipid binding 40
GO:0004871 signal transducer activity 38
GO:0000166 nucleotide binding 36
GO:0004518 nuclease activity 35
GO:0004872 receptor activity 32
GO:0030246 carbohydrate binding 12
GO:0005198 structural molecule activity 9
GO:0003700 sequence-specific DNA binding transcription factor activity 8
GO:0008135 translation factor activity, nucleic acid binding 5
GO:0003682 chromatin binding 5
GO:0003676 nucleic acid binding 4
GO:0003774 motor activity 4
GO:0045182 translation regulator activity 3