List of proteins associated with COG cluster: COG0467   RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Protein ID
Link to complete
analysis report

 Lenth
Link to complete
analysis report

 Similarity with COG COG0467
 All predicted COG clusters
psy3143 337 hhsearch probability: 91.68    Identity: 23%
subject length: 260   Length of aligned reigon: 53
Coverage over query: 127-186   Coverage over subject: 22-74
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG1204, Superfamily II helicase [General function prediction only]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG4889, Predicted helicase [General function prediction only]
COG3587, Restriction endonuclease [Defense mechanisms]
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
COG3421, Uncharacterized protein conserved in bacteria [Function unknown]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG4626, Phage terminase-like protein, large subunit [General function prediction only]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG3972, Superfamily I DNA and RNA helicases [General function prediction only]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1485, Predicted ATPase [General function prediction only]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
psy7780 317 hhsearch probability: 90.98    Identity: 24%
subject length: 260   Length of aligned reigon: 29
Coverage over query: 82-111   Coverage over subject: 25-60
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG0714, MoxR-like ATPases [General function prediction only]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
COG5245, DYN1 Dynein, heavy chain [Cytoskeleton]
COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG1485, Predicted ATPase [General function prediction only]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG4128, Zot Zonula occludens toxin [General function prediction only]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
psy200 490 hhsearch probability: 96.65    Identity: 17%
subject length: 260   Length of aligned reigon: 89
Coverage over query: 217-310   Coverage over subject: 21-136
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0714, MoxR-like ATPases [General function prediction only]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG3899, Predicted ATPase [General function prediction only]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG2842, Uncharacterized ATPase, putative transposase [General function prediction only]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1485, Predicted ATPase [General function prediction only]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
psy6716 371 hhsearch probability: 96.87    Identity: 32%
subject length: 260   Length of aligned reigon: 38
Coverage over query: 113-150   Coverage over subject: 21-61
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG0714, MoxR-like ATPases [General function prediction only]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1485, Predicted ATPase [General function prediction only]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG5245, DYN1 Dynein, heavy chain [Cytoskeleton]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
psy4698 258 hhsearch probability: 93.34    Identity: 20%
subject length: 260   Length of aligned reigon: 54
Coverage over query: 82-139   Coverage over subject: 21-74
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG1204, Superfamily II helicase [General function prediction only]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG4889, Predicted helicase [General function prediction only]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG3587, Restriction endonuclease [Defense mechanisms]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
COG3421, Uncharacterized protein conserved in bacteria [Function unknown]
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG4626, Phage terminase-like protein, large subunit [General function prediction only]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
COG3972, Superfamily I DNA and RNA helicases [General function prediction only]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
psy9399 453 hhsearch probability: 90.40    Identity: 15%
subject length: 260   Length of aligned reigon: 54
Coverage over query: 37-122   Coverage over subject: 22-75
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG1204, Superfamily II helicase [General function prediction only]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG4889, Predicted helicase [General function prediction only]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
COG3587, Restriction endonuclease [Defense mechanisms]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG3421, Uncharacterized protein conserved in bacteria [Function unknown]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG4626, Phage terminase-like protein, large subunit [General function prediction only]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
COG3972, Superfamily I DNA and RNA helicases [General function prediction only]
COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
psy9400 453 hhsearch probability: 90.40    Identity: 15%
subject length: 260   Length of aligned reigon: 54
Coverage over query: 37-122   Coverage over subject: 22-75
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG1204, Superfamily II helicase [General function prediction only]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG4889, Predicted helicase [General function prediction only]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
COG3587, Restriction endonuclease [Defense mechanisms]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG3421, Uncharacterized protein conserved in bacteria [Function unknown]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG4626, Phage terminase-like protein, large subunit [General function prediction only]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
COG3972, Superfamily I DNA and RNA helicases [General function prediction only]
COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
psy9401 453 hhsearch probability: 90.40    Identity: 15%
subject length: 260   Length of aligned reigon: 54
Coverage over query: 37-122   Coverage over subject: 22-75
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG1204, Superfamily II helicase [General function prediction only]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG4889, Predicted helicase [General function prediction only]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
COG3587, Restriction endonuclease [Defense mechanisms]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG3421, Uncharacterized protein conserved in bacteria [Function unknown]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG4626, Phage terminase-like protein, large subunit [General function prediction only]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
COG3972, Superfamily I DNA and RNA helicases [General function prediction only]
COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
psy12150 456 hhsearch probability: 95.89    Identity: 28%
subject length: 260   Length of aligned reigon: 43
Coverage over query: 60-104   Coverage over subject: 15-59
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1466, HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
COG0714, MoxR-like ATPases [General function prediction only]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG3899, Predicted ATPase [General function prediction only]
COG2842, Uncharacterized ATPase, putative transposase [General function prediction only]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG1100, GTPase SAR1 and related small G proteins [General function prediction only]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1485, Predicted ATPase [General function prediction only]
COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
psy9129 405 hhsearch probability: 95.91    Identity: 27%
subject length: 260   Length of aligned reigon: 41
Coverage over query: 271-311   Coverage over subject: 24-67
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG0714, MoxR-like ATPases [General function prediction only]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG1485, Predicted ATPase [General function prediction only]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
psy15087 341 hhsearch probability: 96.95    Identity: 21%
subject length: 260   Length of aligned reigon: 97
Coverage over query: 197-295   Coverage over subject: 20-158
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG0714, MoxR-like ATPases [General function prediction only]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
COG1485, Predicted ATPase [General function prediction only]
COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
psy5521 570 hhsearch probability: 95.91    Identity: 32%
subject length: 260   Length of aligned reigon: 37
Coverage over query: 258-294   Coverage over subject: 20-59
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG0714, MoxR-like ATPases [General function prediction only]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
COG4566, TtrR Response regulator [Signal transduction mechanisms]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG1485, Predicted ATPase [General function prediction only]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG5245, DYN1 Dynein, heavy chain [Cytoskeleton]
COG0745, OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
psy12977 226 hhsearch probability: 94.11    Identity: 23%
subject length: 260   Length of aligned reigon: 56
Coverage over query: 47-107   Coverage over subject: 21-76
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1204, Superfamily II helicase [General function prediction only]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG3587, Restriction endonuclease [Defense mechanisms]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG4889, Predicted helicase [General function prediction only]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG3421, Uncharacterized protein conserved in bacteria [Function unknown]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG4626, Phage terminase-like protein, large subunit [General function prediction only]
COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
COG1485, Predicted ATPase [General function prediction only]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1674, FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG3972, Superfamily I DNA and RNA helicases [General function prediction only]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
psy16204 577 hhsearch probability: 96.02    Identity: 31%
subject length: 260   Length of aligned reigon: 36
Coverage over query: 248-283   Coverage over subject: 24-62
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG0714, MoxR-like ATPases [General function prediction only]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1485, Predicted ATPase [General function prediction only]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
psy4598 369 hhsearch probability: 96.46    Identity: 18%
subject length: 260   Length of aligned reigon: 62
Coverage over query: 271-332   Coverage over subject: 22-93
COG0241, HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
COG0546, Gph Predicted phosphatases [General function prediction only]
COG4639, Predicted kinase [General function prediction only]
COG0645, Predicted kinase [General function prediction only]
COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]
COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]
COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG0647, NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG4185, Uncharacterized protein conserved in bacteria [Function unknown]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0560, SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
COG3896, Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
COG0572, Udk Uridine kinase [Nucleotide transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG1778, Low specificity phosphatase (HAD superfamily) [General function prediction only]
COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism]
COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]
COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
COG1660, Predicted P-loop-containing kinase [General function prediction only]
COG4996, Predicted phosphatase [General function prediction only]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG0561, Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG4359, Uncharacterized conserved protein [Function unknown]
COG4087, Soluble P-type ATPase [General function prediction only]
COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG3769, Predicted hydrolase (HAD superfamily) [General function prediction only]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
COG3700, AphA Acid phosphatase (class B) [General function prediction only]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
psy2778 409 hhsearch probability: 96.75    Identity: 34%
subject length: 260   Length of aligned reigon: 41
Coverage over query: 5-45   Coverage over subject: 19-60
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG0714, MoxR-like ATPases [General function prediction only]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1067, LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
COG1855, ATPase (PilT family) [General function prediction only]
psy14696 355 hhsearch probability: 94.94    Identity: 24%
subject length: 260   Length of aligned reigon: 34
Coverage over query: 13-48   Coverage over subject: 24-57
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG0645, Predicted kinase [General function prediction only]
COG4639, Predicted kinase [General function prediction only]
COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism]
COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG3896, Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0572, Udk Uridine kinase [Nucleotide transport and metabolism]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
COG1660, Predicted P-loop-containing kinase [General function prediction only]
COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]
COG4185, Uncharacterized protein conserved in bacteria [Function unknown]
COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
COG1855, ATPase (PilT family) [General function prediction only]
COG1072, CoaA Panthothenate kinase [Coenzyme metabolism]
COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
COG3911, Predicted ATPase [General function prediction only]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG1341, Predicted GTPase or GTP-binding protein [General function prediction only]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG5324, Uncharacterized conserved protein [Function unknown]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
COG0523, Putative GTPases (G3E family) [General function prediction only]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
COG0178, UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
psy2713 143 hhsearch probability: 97.79    Identity: 22%
subject length: 260   Length of aligned reigon: 41
Coverage over query: 5-45   Coverage over subject: 22-62
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG4639, Predicted kinase [General function prediction only]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0645, Predicted kinase [General function prediction only]
COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG0572, Udk Uridine kinase [Nucleotide transport and metabolism]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG3896, Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
COG4185, Uncharacterized protein conserved in bacteria [Function unknown]
COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism]
COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]
COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG4240, Predicted kinase [General function prediction only]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG1072, CoaA Panthothenate kinase [Coenzyme metabolism]
COG1660, Predicted P-loop-containing kinase [General function prediction only]
COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
COG1855, ATPase (PilT family) [General function prediction only]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG3172, NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1100, GTPase SAR1 and related small G proteins [General function prediction only]
COG0802, Predicted ATPase or kinase [General function prediction only]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1341, Predicted GTPase or GTP-binding protein [General function prediction only]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3911, Predicted ATPase [General function prediction only]
COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG0489, Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
psy11347 294 hhsearch probability: 96.17    Identity: 21%
subject length: 260   Length of aligned reigon: 57
Coverage over query: 34-92   Coverage over subject: 7-65
COG2894, MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
COG0455, flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
COG1192, Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
COG0489, Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
COG4963, CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
COG1348, NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
COG0132, BioD Dethiobiotin synthetase [Coenzyme metabolism]
COG1797, CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1492, CobQ Cobyric acid synthase [Coenzyme metabolism]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG1341, Predicted GTPase or GTP-binding protein [General function prediction only]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
COG0857, Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
COG1159, Era GTPase [General function prediction only]
COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG2403, Predicted GTPase [General function prediction only]
COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG0050, TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG3367, Uncharacterized conserved protein [Function unknown]
COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
COG0572, Udk Uridine kinase [Nucleotide transport and metabolism]
COG1160, Predicted GTPases [General function prediction only]
COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
COG0480, FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
COG4108, PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
psy7809 343 hhsearch probability: 97.29    Identity: 23%
subject length: 260   Length of aligned reigon: 101
Coverage over query: 84-184   Coverage over subject: 18-160
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0714, MoxR-like ATPases [General function prediction only]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
COG1485, Predicted ATPase [General function prediction only]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG5245, DYN1 Dynein, heavy chain [Cytoskeleton]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
COG1855, ATPase (PilT family) [General function prediction only]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
psy13716 544 hhsearch probability: 95.10    Identity: 27%
subject length: 260   Length of aligned reigon: 52
Coverage over query: 434-487   Coverage over subject: 21-72
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG5245, DYN1 Dynein, heavy chain [Cytoskeleton]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG0714, MoxR-like ATPases [General function prediction only]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
psy7438 1161 hhsearch probability: 96.00    Identity: 16%
subject length: 260   Length of aligned reigon: 80
Coverage over query: 872-952   Coverage over subject: 18-136
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0714, MoxR-like ATPases [General function prediction only]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG5245, DYN1 Dynein, heavy chain [Cytoskeleton]
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1485, Predicted ATPase [General function prediction only]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
psy6208 197 hhsearch probability: 97.55    Identity: 35%
subject length: 260   Length of aligned reigon: 40
Coverage over query: 116-155   Coverage over subject: 19-61
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG0714, MoxR-like ATPases [General function prediction only]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG1485, Predicted ATPase [General function prediction only]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG1855, ATPase (PilT family) [General function prediction only]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
psy2764 419 hhsearch probability: 94.28    Identity: 18%
subject length: 260   Length of aligned reigon: 55
Coverage over query: 87-142   Coverage over subject: 22-76
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG1204, Superfamily II helicase [General function prediction only]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG4889, Predicted helicase [General function prediction only]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
COG3587, Restriction endonuclease [Defense mechanisms]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
COG3421, Uncharacterized protein conserved in bacteria [Function unknown]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG4626, Phage terminase-like protein, large subunit [General function prediction only]
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
psy4275 182 hhsearch probability: 94.90    Identity: 13%
subject length: 260   Length of aligned reigon: 54
Coverage over query: 40-97   Coverage over subject: 20-73
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG1204, Superfamily II helicase [General function prediction only]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG4889, Predicted helicase [General function prediction only]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
COG3587, Restriction endonuclease [Defense mechanisms]
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG3421, Uncharacterized protein conserved in bacteria [Function unknown]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG4626, Phage terminase-like protein, large subunit [General function prediction only]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG3972, Superfamily I DNA and RNA helicases [General function prediction only]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
psy3997 256 hhsearch probability: 97.42    Identity: 24%
subject length: 260   Length of aligned reigon: 45
Coverage over query: 11-61   Coverage over subject: 18-62
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0714, MoxR-like ATPases [General function prediction only]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
COG0645, Predicted kinase [General function prediction only]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG1855, ATPase (PilT family) [General function prediction only]
psy15487 386 hhsearch probability: 92.20    Identity: 14%
subject length: 260   Length of aligned reigon: 49
Coverage over query: 40-93   Coverage over subject: 24-72
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1204, Superfamily II helicase [General function prediction only]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG4889, Predicted helicase [General function prediction only]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG3421, Uncharacterized protein conserved in bacteria [Function unknown]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG3587, Restriction endonuclease [Defense mechanisms]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG4626, Phage terminase-like protein, large subunit [General function prediction only]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
psy9244 119 hhsearch probability: 97.50    Identity: 32%
subject length: 260   Length of aligned reigon: 37
Coverage over query: 15-51   Coverage over subject: 21-62
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG0572, Udk Uridine kinase [Nucleotide transport and metabolism]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
COG0645, Predicted kinase [General function prediction only]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism]
COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG4639, Predicted kinase [General function prediction only]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG1855, ATPase (PilT family) [General function prediction only]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG4240, Predicted kinase [General function prediction only]
COG3911, Predicted ATPase [General function prediction only]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG0714, MoxR-like ATPases [General function prediction only]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG3172, NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
psy496 319 hhsearch probability: 92.53    Identity: 20%
subject length: 260   Length of aligned reigon: 54
Coverage over query: 65-124   Coverage over subject: 19-72
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1204, Superfamily II helicase [General function prediction only]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG4889, Predicted helicase [General function prediction only]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG3587, Restriction endonuclease [Defense mechanisms]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG3421, Uncharacterized protein conserved in bacteria [Function unknown]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
psy1539 175 hhsearch probability: 93.01    Identity: 21%
subject length: 260   Length of aligned reigon: 53
Coverage over query: 50-106   Coverage over subject: 22-74
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1204, Superfamily II helicase [General function prediction only]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG4889, Predicted helicase [General function prediction only]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG3587, Restriction endonuclease [Defense mechanisms]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
COG1855, ATPase (PilT family) [General function prediction only]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
COG4626, Phage terminase-like protein, large subunit [General function prediction only]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
psy11253 515 hhsearch probability: 95.84    Identity: 30%
subject length: 260   Length of aligned reigon: 43
Coverage over query: 124-166   Coverage over subject: 19-64
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG0714, MoxR-like ATPases [General function prediction only]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG1855, ATPase (PilT family) [General function prediction only]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
psy3484 257 hhsearch probability: 97.01    Identity: 21%
subject length: 260   Length of aligned reigon: 38
Coverage over query: 2-43   Coverage over subject: 25-62
COG4639, Predicted kinase [General function prediction only]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0645, Predicted kinase [General function prediction only]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG4185, Uncharacterized protein conserved in bacteria [Function unknown]
COG0572, Udk Uridine kinase [Nucleotide transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism]
COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG3896, Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1855, ATPase (PilT family) [General function prediction only]
COG3911, Predicted ATPase [General function prediction only]
COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
COG4240, Predicted kinase [General function prediction only]
COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG1660, Predicted P-loop-containing kinase [General function prediction only]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
COG3172, NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
COG1341, Predicted GTPase or GTP-binding protein [General function prediction only]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG1072, CoaA Panthothenate kinase [Coenzyme metabolism]
COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
COG5324, Uncharacterized conserved protein [Function unknown]
psy16874 227 hhsearch probability: 97.12    Identity: 26%
subject length: 260   Length of aligned reigon: 38
Coverage over query: 6-43   Coverage over subject: 21-58
COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism]
COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism]
COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism]
COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
COG0572, Udk Uridine kinase [Nucleotide transport and metabolism]
COG0645, Predicted kinase [General function prediction only]
COG2326, Uncharacterized conserved protein [Function unknown]
COG3911, Predicted ATPase [General function prediction only]
COG4639, Predicted kinase [General function prediction only]
COG3172, NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1072, CoaA Panthothenate kinase [Coenzyme metabolism]
COG1660, Predicted P-loop-containing kinase [General function prediction only]
COG3896, Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1855, ATPase (PilT family) [General function prediction only]
COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
COG4240, Predicted kinase [General function prediction only]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
COG0802, Predicted ATPase or kinase [General function prediction only]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
psy4122 162 hhsearch probability: 97.60    Identity: 21%
subject length: 260   Length of aligned reigon: 52
Coverage over query: 34-87   Coverage over subject: 12-67
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG0714, MoxR-like ATPases [General function prediction only]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0802, Predicted ATPase or kinase [General function prediction only]
COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1485, Predicted ATPase [General function prediction only]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
psy6523 713 hhsearch probability: 94.83    Identity: 37%
subject length: 260   Length of aligned reigon: 41
Coverage over query: 125-165   Coverage over subject: 18-61
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG5640, Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG0714, MoxR-like ATPases [General function prediction only]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
COG1855, ATPase (PilT family) [General function prediction only]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG0645, Predicted kinase [General function prediction only]
COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]
psy17644 330 hhsearch probability: 90.99    Identity: 26%
subject length: 260   Length of aligned reigon: 54
Coverage over query: 203-265   Coverage over subject: 22-75
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG1204, Superfamily II helicase [General function prediction only]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG4889, Predicted helicase [General function prediction only]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
COG3587, Restriction endonuclease [Defense mechanisms]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG4626, Phage terminase-like protein, large subunit [General function prediction only]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
COG3421, Uncharacterized protein conserved in bacteria [Function unknown]
COG3972, Superfamily I DNA and RNA helicases [General function prediction only]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
psy14616 174 hhsearch probability: 97.73    Identity: 32%
subject length: 260   Length of aligned reigon: 41
Coverage over query: 19-59   Coverage over subject: 17-60
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0714, MoxR-like ATPases [General function prediction only]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG1855, ATPase (PilT family) [General function prediction only]
COG0802, Predicted ATPase or kinase [General function prediction only]
COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
psy1090 169 hhsearch probability: 91.58    Identity: 23%
subject length: 260   Length of aligned reigon: 48
Coverage over query: 4-53   Coverage over subject: 27-74
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG4889, Predicted helicase [General function prediction only]
COG1204, Superfamily II helicase [General function prediction only]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG3587, Restriction endonuclease [Defense mechanisms]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG3421, Uncharacterized protein conserved in bacteria [Function unknown]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
COG3972, Superfamily I DNA and RNA helicases [General function prediction only]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
COG2894, MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism]
psy14655 261 hhsearch probability: 94.38    Identity: 8%
subject length: 260   Length of aligned reigon: 40
Coverage over query: 2-43   Coverage over subject: 27-66
COG1192, Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
COG2894, MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
COG0455, flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
COG0489, Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
COG1348, NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
COG4963, CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG0132, BioD Dethiobiotin synthetase [Coenzyme metabolism]
COG1341, Predicted GTPase or GTP-binding protein [General function prediction only]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1797, CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG0050, TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG1159, Era GTPase [General function prediction only]
COG1492, CobQ Cobyric acid synthase [Coenzyme metabolism]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair]
COG0523, Putative GTPases (G3E family) [General function prediction only]
COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
COG4240, Predicted kinase [General function prediction only]
COG5623, CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
COG3367, Uncharacterized conserved protein [Function unknown]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1160, Predicted GTPases [General function prediction only]
COG2403, Predicted GTPase [General function prediction only]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism]
COG0572, Udk Uridine kinase [Nucleotide transport and metabolism]
COG1855, ATPase (PilT family) [General function prediction only]
COG1663, LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
COG2759, MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
psy17974 583 hhsearch probability: 95.47    Identity: 25%
subject length: 260   Length of aligned reigon: 52
Coverage over query: 403-457   Coverage over subject: 20-71
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG0714, MoxR-like ATPases [General function prediction only]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG3283, TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG3284, AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG5245, DYN1 Dynein, heavy chain [Cytoskeleton]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1485, Predicted ATPase [General function prediction only]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG0802, Predicted ATPase or kinase [General function prediction only]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
psy6275 391 hhsearch probability: 95.55    Identity: 15%
subject length: 260   Length of aligned reigon: 55
Coverage over query: 70-125   Coverage over subject: 21-75
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG1204, Superfamily II helicase [General function prediction only]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG4889, Predicted helicase [General function prediction only]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG3587, Restriction endonuclease [Defense mechanisms]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG3421, Uncharacterized protein conserved in bacteria [Function unknown]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG4626, Phage terminase-like protein, large subunit [General function prediction only]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG1485, Predicted ATPase [General function prediction only]
psy7786 252 hhsearch probability: 91.65    Identity: 19%
subject length: 260   Length of aligned reigon: 53
Coverage over query: 5-69   Coverage over subject: 21-73
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG1204, Superfamily II helicase [General function prediction only]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG3587, Restriction endonuclease [Defense mechanisms]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
psy18032 333 hhsearch probability: 90.42    Identity: 24%
subject length: 260   Length of aligned reigon: 55
Coverage over query: 73-133   Coverage over subject: 22-76
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1204, Superfamily II helicase [General function prediction only]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG4889, Predicted helicase [General function prediction only]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG3587, Restriction endonuclease [Defense mechanisms]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
psy17388 272 hhsearch probability: 97.28    Identity: 21%
subject length: 260   Length of aligned reigon: 43
Coverage over query: 20-62   Coverage over subject: 21-63
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG2046, MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0645, Predicted kinase [General function prediction only]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG3896, Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
COG4639, Predicted kinase [General function prediction only]
COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
COG0572, Udk Uridine kinase [Nucleotide transport and metabolism]
COG1660, Predicted P-loop-containing kinase [General function prediction only]
COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
COG1072, CoaA Panthothenate kinase [Coenzyme metabolism]
COG4185, Uncharacterized protein conserved in bacteria [Function unknown]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG4240, Predicted kinase [General function prediction only]
COG1341, Predicted GTPase or GTP-binding protein [General function prediction only]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
COG1855, ATPase (PilT family) [General function prediction only]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG3911, Predicted ATPase [General function prediction only]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG0802, Predicted ATPase or kinase [General function prediction only]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
psy14192 2330 hhsearch probability: 90.49    Identity: 30%
subject length: 260   Length of aligned reigon: 43
Coverage over query: 47-96   Coverage over subject: 21-63
COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms]
COG5238, RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
COG4886, Leucine-rich repeat (LRR) protein [Function unknown]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
psy9277 178 hhsearch probability: 93.06    Identity: 22%
subject length: 260   Length of aligned reigon: 58
Coverage over query: 66-127   Coverage over subject: 20-77
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG1204, Superfamily II helicase [General function prediction only]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG4889, Predicted helicase [General function prediction only]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG3587, Restriction endonuclease [Defense mechanisms]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
psy14082 233 hhsearch probability: 91.48    Identity: 15%
subject length: 260   Length of aligned reigon: 54
Coverage over query: 5-67   Coverage over subject: 20-73
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG1204, Superfamily II helicase [General function prediction only]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG4889, Predicted helicase [General function prediction only]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG0653, SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
COG3587, Restriction endonuclease [Defense mechanisms]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
psy9392 168 hhsearch probability: 96.18    Identity: 18%
subject length: 260   Length of aligned reigon: 40
Coverage over query: 29-70   Coverage over subject: 21-60
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0714, MoxR-like ATPases [General function prediction only]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1204, Superfamily II helicase [General function prediction only]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG4240, Predicted kinase [General function prediction only]
COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
COG1855, ATPase (PilT family) [General function prediction only]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
COG1072, CoaA Panthothenate kinase [Coenzyme metabolism]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
COG3911, Predicted ATPase [General function prediction only]
COG4650, RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG3972, Superfamily I DNA and RNA helicases [General function prediction only]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
psy2029 138 hhsearch probability: 97.07    Identity: 10%
subject length: 260   Length of aligned reigon: 52
Coverage over query: 3-56   Coverage over subject: 22-73
COG1204, Superfamily II helicase [General function prediction only]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG4889, Predicted helicase [General function prediction only]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG3451, VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
COG3587, Restriction endonuclease [Defense mechanisms]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
psy12479 409 hhsearch probability: 90.08    Identity: 20%
subject length: 260   Length of aligned reigon: 45
Coverage over query: 236-280   Coverage over subject: 14-60
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG1204, Superfamily II helicase [General function prediction only]
COG1847, Jag Predicted RNA-binding protein [General function prediction only]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3910, Predicted ATPase [General function prediction only]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG0714, MoxR-like ATPases [General function prediction only]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
psy12736 567 hhsearch probability: 93.23    Identity: 26%
subject length: 260   Length of aligned reigon: 27
Coverage over query: 191-217   Coverage over subject: 21-47
COG5245, DYN1 Dynein, heavy chain [Cytoskeleton]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG0714, MoxR-like ATPases [General function prediction only]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG5019, CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
psy18130 3707 hhsearch probability: 91.96    Identity: 32%
subject length: 260   Length of aligned reigon: 50
Coverage over query: 2450-2507   Coverage over subject: 23-72
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG3972, Superfamily I DNA and RNA helicases [General function prediction only]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
psy9977 192 hhsearch probability: 97.16    Identity: 16%
subject length: 260   Length of aligned reigon: 43
Coverage over query: 8-50   Coverage over subject: 24-66
COG0489, Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
COG0455, flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
COG2894, MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
COG1192, Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
COG4963, CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
COG1348, NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG0132, BioD Dethiobiotin synthetase [Coenzyme metabolism]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG1341, Predicted GTPase or GTP-binding protein [General function prediction only]
COG1797, CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
COG1492, CobQ Cobyric acid synthase [Coenzyme metabolism]
COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
COG2403, Predicted GTPase [General function prediction only]
COG1159, Era GTPase [General function prediction only]
COG1160, Predicted GTPases [General function prediction only]
COG0857, Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG0050, TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
COG0523, Putative GTPases (G3E family) [General function prediction only]
COG3367, Uncharacterized conserved protein [Function unknown]
COG4240, Predicted kinase [General function prediction only]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair]
COG0504, PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism]
COG0480, FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1663, LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
COG4108, PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
COG0572, Udk Uridine kinase [Nucleotide transport and metabolism]
COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism]
COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG1072, CoaA Panthothenate kinase [Coenzyme metabolism]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
psy14904 233 hhsearch probability: 96.49    Identity: 28%
subject length: 260   Length of aligned reigon: 36
Coverage over query: 6-42   Coverage over subject: 23-58
COG0132, BioD Dethiobiotin synthetase [Coenzyme metabolism]
COG1797, CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
COG2894, MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
COG0489, Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
COG0455, flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
COG1192, Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
COG1492, CobQ Cobyric acid synthase [Coenzyme metabolism]
COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
COG0857, Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
COG1348, NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG4963, CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG3367, Uncharacterized conserved protein [Function unknown]
COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
COG1341, Predicted GTPase or GTP-binding protein [General function prediction only]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG2403, Predicted GTPase [General function prediction only]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG2109, BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0572, Udk Uridine kinase [Nucleotide transport and metabolism]
COG4240, Predicted kinase [General function prediction only]
COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG1159, Era GTPase [General function prediction only]
COG1855, ATPase (PilT family) [General function prediction only]
COG0504, PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1663, LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
COG4108, PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism]
COG1160, Predicted GTPases [General function prediction only]
COG0480, FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
COG0370, FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
COG1072, CoaA Panthothenate kinase [Coenzyme metabolism]
COG3911, Predicted ATPase [General function prediction only]
COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]
COG2759, MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
COG0050, TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
psy4952 322 hhsearch probability: 94.90    Identity: 19%
subject length: 260   Length of aligned reigon: 52
Coverage over query: 142-195   Coverage over subject: 20-71
COG5245, DYN1 Dynein, heavy chain [Cytoskeleton]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG0714, MoxR-like ATPases [General function prediction only]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG3829, RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG1855, ATPase (PilT family) [General function prediction only]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
psy4898 2274 hhsearch probability: 92.47    Identity: 32%
subject length: 260   Length of aligned reigon: 44
Coverage over query: 853-897   Coverage over subject: 24-67
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG3972, Superfamily I DNA and RNA helicases [General function prediction only]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
COG1204, Superfamily II helicase [General function prediction only]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG4889, Predicted helicase [General function prediction only]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
psy7268 134 hhsearch probability: 93.12    Identity: 22%
subject length: 260   Length of aligned reigon: 37
Coverage over query: 75-123   Coverage over subject: 22-58
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG1204, Superfamily II helicase [General function prediction only]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG4889, Predicted helicase [General function prediction only]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG3587, Restriction endonuclease [Defense mechanisms]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG0714, MoxR-like ATPases [General function prediction only]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
psy9645 98 hhsearch probability: 96.29    Identity: 28%
subject length: 260   Length of aligned reigon: 32
Coverage over query: 41-72   Coverage over subject: 25-60
COG1241, MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG0714, MoxR-like ATPases [General function prediction only]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
psy3251 959 hhsearch probability: 95.38    Identity: 35%
subject length: 260   Length of aligned reigon: 46
Coverage over query: 519-565   Coverage over subject: 23-68
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
COG3972, Superfamily I DNA and RNA helicases [General function prediction only]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
COG1204, Superfamily II helicase [General function prediction only]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG4889, Predicted helicase [General function prediction only]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG0714, MoxR-like ATPases [General function prediction only]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG3857, AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG3911, Predicted ATPase [General function prediction only]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
psy1950 306 hhsearch probability: 96.77    Identity: 26%
subject length: 260   Length of aligned reigon: 42
Coverage over query: 238-279   Coverage over subject: 18-62
COG0714, MoxR-like ATPases [General function prediction only]
COG5271, MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG0802, Predicted ATPase or kinase [General function prediction only]
COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
COG2204, AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
COG3604, FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1239, ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
psy3307 130 hhsearch probability: 94.63    Identity: 25%
subject length: 260   Length of aligned reigon: 55
Coverage over query: 47-121   Coverage over subject: 22-76
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG1204, Superfamily II helicase [General function prediction only]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG4889, Predicted helicase [General function prediction only]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG3587, Restriction endonuclease [Defense mechanisms]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair]
COG4185, Uncharacterized protein conserved in bacteria [Function unknown]
COG0714, MoxR-like ATPases [General function prediction only]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
psy7186 135 hhsearch probability: 98.39    Identity: 24%
subject length: 260   Length of aligned reigon: 38
Coverage over query: 1-39   Coverage over subject: 25-62
COG4639, Predicted kinase [General function prediction only]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0645, Predicted kinase [General function prediction only]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG4185, Uncharacterized protein conserved in bacteria [Function unknown]
COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG0572, Udk Uridine kinase [Nucleotide transport and metabolism]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]
COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
COG3896, Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
COG4240, Predicted kinase [General function prediction only]
COG3911, Predicted ATPase [General function prediction only]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1660, Predicted P-loop-containing kinase [General function prediction only]
COG1855, ATPase (PilT family) [General function prediction only]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG3172, NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0802, Predicted ATPase or kinase [General function prediction only]
COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
psy7782 225 hhsearch probability: 96.63    Identity: 28%
subject length: 260   Length of aligned reigon: 39
Coverage over query: 27-65   Coverage over subject: 18-62
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1220, HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0714, MoxR-like ATPases [General function prediction only]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
COG1855, ATPase (PilT family) [General function prediction only]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG1221, PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
psy9979 65 hhsearch probability: 97.96    Identity: 18%
subject length: 260   Length of aligned reigon: 45
Coverage over query: 6-50   Coverage over subject: 22-67
COG1192, Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
COG0489, Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
COG2894, MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
COG0455, flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
COG0003, ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
COG3640, CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG1348, NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG1341, Predicted GTPase or GTP-binding protein [General function prediction only]
COG0572, Udk Uridine kinase [Nucleotide transport and metabolism]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0125, Tmk Thymidylate kinase [Nucleotide transport and metabolism]
COG1072, CoaA Panthothenate kinase [Coenzyme metabolism]
COG4240, Predicted kinase [General function prediction only]
COG4963, CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism]
COG1855, ATPase (PilT family) [General function prediction only]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism]
COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
COG0132, BioD Dethiobiotin synthetase [Coenzyme metabolism]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1797, CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG2403, Predicted GTPase [General function prediction only]
COG3911, Predicted ATPase [General function prediction only]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]
COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG5623, CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
psy12659 1051 hhsearch probability: 96.19    Identity: 30%
subject length: 260   Length of aligned reigon: 53
Coverage over query: 192-247   Coverage over subject: 23-75
COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
COG5262, HTA1 Histone H2A [Chromatin structure and dynamics]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
psy2760 333 hhsearch probability: 94.85    Identity: 19%
subject length: 260   Length of aligned reigon: 53
Coverage over query: 208-262   Coverage over subject: 22-74
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG1204, Superfamily II helicase [General function prediction only]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG4889, Predicted helicase [General function prediction only]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG4626, Phage terminase-like protein, large subunit [General function prediction only]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
psy11637 67 hhsearch probability: 96.09    Identity: 23%
subject length: 260   Length of aligned reigon: 44
Coverage over query: 19-62   Coverage over subject: 12-60
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG4889, Predicted helicase [General function prediction only]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1204, Superfamily II helicase [General function prediction only]
COG0514, RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG1202, Superfamily II helicase, archaea-specific [General function prediction only]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG3587, Restriction endonuclease [Defense mechanisms]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG0419, SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG0324, MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG3421, Uncharacterized protein conserved in bacteria [Function unknown]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG4185, Uncharacterized protein conserved in bacteria [Function unknown]
COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG0553, HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG5008, PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG0714, MoxR-like ATPases [General function prediction only]
COG0630, VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG0542, clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
psy210 915 hhsearch probability: 97.80    Identity: 19%
subject length: 260   Length of aligned reigon: 191
Coverage over query: 239-464   Coverage over subject: 3-208
COG1156, NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
COG0445, GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
COG1158, Rho Transcription termination factor [Transcription]
COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
COG0056, AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
COG1155, NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
COG1206, Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
COG0636, AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
psy5519 884 hhsearch probability: 95.72    Identity: 29%
subject length: 260   Length of aligned reigon: 52
Coverage over query: 159-232   Coverage over subject: 22-73
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
COG3972, Superfamily I DNA and RNA helicases [General function prediction only]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG0714, MoxR-like ATPases [General function prediction only]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG4889, Predicted helicase [General function prediction only]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1855, ATPase (PilT family) [General function prediction only]
COG0703, AroK Shikimate kinase [Amino acid transport and metabolism]
COG1204, Superfamily II helicase [General function prediction only]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
psy3261 342 hhsearch probability: 96.01    Identity: 13%
subject length: 260   Length of aligned reigon: 38
Coverage over query: 65-102   Coverage over subject: 21-58
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG2812, DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG3899, Predicted ATPase [General function prediction only]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG3911, Predicted ATPase [General function prediction only]
COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
psy8456 353 hhsearch probability: 92.25    Identity: 18%
subject length: 260   Length of aligned reigon: 39
Coverage over query: 150-188   Coverage over subject: 23-61
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]
psy16283 467 hhsearch probability: 96.76    Identity: 33%
subject length: 260   Length of aligned reigon: 49
Coverage over query: 2-58   Coverage over subject: 25-73
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
COG3972, Superfamily I DNA and RNA helicases [General function prediction only]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG4889, Predicted helicase [General function prediction only]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1855, ATPase (PilT family) [General function prediction only]
COG0714, MoxR-like ATPases [General function prediction only]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG1763, MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG3911, Predicted ATPase [General function prediction only]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
psy4476 266 hhsearch probability: 95.22    Identity: 13%
subject length: 260   Length of aligned reigon: 39
Coverage over query: 148-193   Coverage over subject: 23-61
COG0507, RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0714, MoxR-like ATPases [General function prediction only]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG5192, BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG3911, Predicted ATPase [General function prediction only]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
psy3765 592 hhsearch probability: 98.05    Identity: 18%
subject length: 260   Length of aligned reigon: 176
Coverage over query: 113-313   Coverage over subject: 4-200
COG1156, NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
COG1158, Rho Transcription termination factor [Transcription]
COG0056, AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG1155, NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
psy16285 97 hhsearch probability: 98.56    Identity: 30%
subject length: 260   Length of aligned reigon: 54
Coverage over query: 33-94   Coverage over subject: 22-75
COG1061, SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG4096, HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
COG0210, UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
COG0556, UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
COG3973, Superfamily I DNA and RNA helicases [General function prediction only]
COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG0513, SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
COG1198, PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG1204, Superfamily II helicase [General function prediction only]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG1201, Lhr Lhr-like helicases [General function prediction only]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
COG4889, Predicted helicase [General function prediction only]
COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1199, DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG1643, HrpA HrpA-like helicases [DNA replication, recombination, and repair]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG1074, RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0714, MoxR-like ATPases [General function prediction only]
COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1197, Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1702, PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG4962, CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG0466, Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG4098, comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG3911, Predicted ATPase [General function prediction only]
COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
psy4713 103 hhsearch probability: 92.32    Identity: 12%
subject length: 260   Length of aligned reigon: 59
Coverage over query: 4-62   Coverage over subject: 22-84
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism]
COG0572, Udk Uridine kinase [Nucleotide transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG2804, PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG3267, ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
psy13776 539 hhsearch probability: 97.88    Identity: 20%
subject length: 260   Length of aligned reigon: 182
Coverage over query: 188-443   Coverage over subject: 3-199
COG1156, NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
COG1158, Rho Transcription termination factor [Transcription]
COG1155, NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
COG0056, AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
psy13480 615 hhsearch probability: 97.44    Identity: 21%
subject length: 260   Length of aligned reigon: 126
Coverage over query: 223-353   Coverage over subject: 3-137
COG1156, NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
COG1158, Rho Transcription termination factor [Transcription]
COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
COG0056, AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
COG1155, NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
psy5595 293 hhsearch probability: 98.20    Identity: 14%
subject length: 260   Length of aligned reigon: 121
Coverage over query: 46-183   Coverage over subject: 6-140
COG1158, Rho Transcription termination factor [Transcription]
COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
COG0056, AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
COG1156, NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
COG1155, NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
psy2897 467 hhsearch probability: 98.45    Identity: 18%
subject length: 260   Length of aligned reigon: 199
Coverage over query: 123-344   Coverage over subject: 3-209
COG1156, NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
COG1158, Rho Transcription termination factor [Transcription]
COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
COG0056, AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG1155, NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
psy2896 467 hhsearch probability: 98.45    Identity: 18%
subject length: 260   Length of aligned reigon: 199
Coverage over query: 123-344   Coverage over subject: 3-209
COG1156, NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
COG1158, Rho Transcription termination factor [Transcription]
COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
COG0056, AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG1155, NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1703, ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
psy2893 515 hhsearch probability: 98.48    Identity: 23%
subject length: 260   Length of aligned reigon: 183
Coverage over query: 144-364   Coverage over subject: 3-200
COG1156, NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
COG1158, Rho Transcription termination factor [Transcription]
COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
COG0056, AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG1155, NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG2087, CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
psy17544 266 hhsearch probability: 97.65    Identity: 22%
subject length: 260   Length of aligned reigon: 68
Coverage over query: 174-242   Coverage over subject: 3-72
COG1156, NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
COG0056, AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
COG1155, NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
COG1158, Rho Transcription termination factor [Transcription]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
psy2894 515 hhsearch probability: 98.48    Identity: 23%
subject length: 260   Length of aligned reigon: 183
Coverage over query: 144-364   Coverage over subject: 3-200
COG1156, NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
COG1158, Rho Transcription termination factor [Transcription]
COG0055, AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
COG0056, AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG0194, Gmk Guanylate kinase [Nucleotide transport and metabolism]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG1155, NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG2087, CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
psy2198 279 hhsearch probability: 99.69    Identity: 21%
subject length: 260   Length of aligned reigon: 155
Coverage over query: 40-209   Coverage over subject: 2-175
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1118, CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG4555, NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
COG2274, SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG4615, PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
COG4175, ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
COG4987, CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG4988, CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
COG1137, YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
COG1132, MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
COG4148, ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
COG4598, HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
COG4138, BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
COG4525, TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
COG1101, PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG4167, SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG4133, CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
COG1119, ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG0488, Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
COG5265, ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
COG2087, CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
COG4161, ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
COG4778, PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG4170, SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
psy4520 291 hhsearch probability: 97.29    Identity: 15%
subject length: 260   Length of aligned reigon: 171
Coverage over query: 2-224   Coverage over subject: 41-211
COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
psy2892 452 hhsearch probability: 99.73    Identity: 24%
subject length: 260   Length of aligned reigon: 209
Coverage over query: 195-434   Coverage over subject: 3-214
COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair]
COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1204, Superfamily II helicase [General function prediction only]
COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG2894, MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
COG1084, Predicted GTPase [General function prediction only]
COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
psy2891 452 hhsearch probability: 99.73    Identity: 24%
subject length: 260   Length of aligned reigon: 209
Coverage over query: 195-434   Coverage over subject: 3-214
COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair]
COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG1131, CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG1435, Tdk Thymidine kinase [Nucleotide transport and metabolism]
COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
COG0410, LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG0411, LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
COG1110, Reverse gyrase [DNA replication, recombination, and repair]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
COG2884, FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
COG4088, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
COG0444, DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1125, OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
COG1134, TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
COG4618, ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG2805, PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
COG1204, Superfamily II helicase [General function prediction only]
COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG1111, MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
COG1135, AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
COG0552, FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG2894, MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
COG1084, Predicted GTPase [General function prediction only]
COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
COG1129, MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
COG2909, MalT ATP-dependent transcriptional regulator [Transcription]
psy15317 728 hhsearch probability: 99.20    Identity: 29%
subject length: 260   Length of aligned reigon: 80
Coverage over query: 71-189   Coverage over subject: 3-82
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG1116, TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG0572, Udk Uridine kinase [Nucleotide transport and metabolism]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
COG0593, DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
psy13674 315 hhsearch probability: 99.53    Identity: 26%
subject length: 260   Length of aligned reigon: 153
Coverage over query: 150-312   Coverage over subject: 2-232
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG3839, MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism]
COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
COG0572, Udk Uridine kinase [Nucleotide transport and metabolism]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG1072, CoaA Panthothenate kinase [Coenzyme metabolism]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG3854, SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
COG3840, ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
COG1157, FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
COG0541, Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism]
psy14203 390 hhsearch probability: 96.19    Identity: 44%
subject length: 260   Length of aligned reigon: 34
Coverage over query: 231-264   Coverage over subject: 12-48
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism]
COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
COG1100, GTPase SAR1 and related small G proteins [General function prediction only]
COG1855, ATPase (PilT family) [General function prediction only]
COG3911, Predicted ATPase [General function prediction only]
COG0464, SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
COG0645, Predicted kinase [General function prediction only]
COG3899, Predicted ATPase [General function prediction only]
COG0378, HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
COG0572, Udk Uridine kinase [Nucleotide transport and metabolism]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
psy7386 253 hhsearch probability: 99.49    Identity: 26%
subject length: 260   Length of aligned reigon: 70
Coverage over query: 179-253   Coverage over subject: 3-75
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1066, Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
COG2874, FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
COG0468, RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
COG0305, DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
COG1127, Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
COG1126, GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
COG1474, CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
COG3598, RepA RecA-family ATPase [DNA replication, recombination, and repair]
COG1484, DnaC DNA replication protein [DNA replication, recombination, and repair]
COG1120, FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
COG1222, RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG4604, CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG1136, SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
COG0470, HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
COG1124, DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
COG1122, CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
COG4608, AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
COG1117, PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
COG4107, PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
COG3842, PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
COG0396, sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
COG1419, FlhF Flagellar GTP-binding protein [Cell motility and secretion]
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG1121, ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
psy2779 101 hhsearch probability: 95.17    Identity: 20%
subject length: 260   Length of aligned reigon: 25
Coverage over query: 65-89   Coverage over subject: 17-41
COG1224, TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]
COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
COG0467, RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
COG1219, ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
COG2256, MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
COG0465, HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
COG2255, RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
COG0714, MoxR-like ATPases [General function prediction only]