List of all proteins in Diaphorina citri psyllid genome

The function and structure prediction results are summarized in the table below.

For function prediction, we show the annotation transfered from the closest relatd SWISS-PROT entry. To see the subset of proteins with 'confident' swiss-prot hits, please click here

For structure prediction, we show the best template structure. To see the subset of proteins with structure template availabe, please click here

For functional classification, we show the closest matched entries of COG, Pfam and GO.

For list of proteins that have COG hits, please click here

For list of proteins that have Pfam hits, please click here

For list of proteins that have GO hits, please click here

Clicking on a protein ID navigates to the complete search results, including Secondary Structure Prediction, Local Sequence Features Prediction, Sequence Search Results (Blast, RPS-Blast and HHsearch), GO Term Prediction and Enzyme Commission Number Prediction. On the webpage, you will obtain the analsys results of the close homologs suitable for annotation transfer, the functionally associated proteins, the conserved domains present in the sequence, the homologous structure templates and the homologous structure domains.

The full list is partitioned and displayed on multiple webpages. To download a flat file of the full list, please click here

A simple query using a name or keyword can be done using the search box below. For protein ID search, please use name format like 'psy12345'. For GO term search, please use name format like 'GO:0005737'. For COG search, please use name format like 'COG3063'. For Pfam search, please use name format like 'PF06418'. You can also input keywords like 'SUI1 Translation initiation factor 1'

      

Browse the full list     
  
List of proteins 1-1000 of total 18242 proteins shown below 
Protein ID
Link to full report
 Length
 Functional Annotation
transferred from the best Swissport hit
Link to Swissprot
 The Best COG hit
Link to Swissprot
 The Best Pfam hit
Link to Pfam
 The Best GO hit
Link to GO
 The Best Template
Link to PDB
psy2008 311 ID: Q5TRE7 (very confident match)
name: ATPase ASNA1 homolog
def: ATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting.
source: Anopheles gambiae (taxid: 7165)
 ID: COG0003
name: ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
score:100.00 (hhsearch)
coverage over query:
4-303
 ID: PF02374
score: 100.00 (hhsearch)
coverage over query:
2-297
 ID: GO:0044297 (very confident match)
name: cell body
 PDB ID: 2woo chain A
(very confident match)
coverage over query:
3-301
psy12939 413 ID: Q60366 (portable match)
name: Putative ammonium transporter MJ0058
def:
source: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)
 ID: COG0004
name: AmtB Ammonia permease [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
63-390
 ID: PF00909
score: 100.00 (hhsearch)
coverage over query:
68-391
 no hit PDB ID: 2b2h chain A
(very confident match)
coverage over query:
63-389
psy9643 412 ID: P55859 (confident match)
name: Purine nucleoside phosphorylase
def:
source: Bos taurus (taxid: 9913)
 ID: COG0005
name: Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
133-403
 ID: PF01048
score: 99.85 (hhsearch)
coverage over query:
187-401
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2p4s chain A
(very confident match)
coverage over query:
127-405
psy17033 148 ID: Q9V813 (confident match)
name: S-methyl-5'-thioadenosine phosphorylase
def: Catalyzes the reversible phosphorylation of S-methyl-5'-thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0005
name: Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-119
 ID: PF01048
score: 99.49 (hhsearch)
coverage over query:
4-117
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1cb0 chain A
(very confident match)
coverage over query:
1-143
psy17032 283 ID: Q9V813 (very confident match)
name: S-methyl-5'-thioadenosine phosphorylase
def: Catalyzes the reversible phosphorylation of S-methyl-5'-thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0005
name: Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
4-254
 ID: PF01048
score: 99.98 (hhsearch)
coverage over query:
7-252
 ID: GO:0006738 (very confident match)
name: nicotinamide riboside catabolic process
 PDB ID: 1wta chain A
(very confident match)
coverage over query:
5-275
psy3139 708 ID: Q6P1B1 (confident match)
name: Xaa-Pro aminopeptidase 1
def: Contributes to the degradation of bradykinin. Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides, such as Arg-Pro-Pro.
source: Mus musculus (taxid: 10090)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
256-659
 ID: PF00557
score: 99.97 (hhsearch)
coverage over query:
434-638
 ID: GO:0005737 (confident match)
name: cytoplasm
 PDB ID: 3ctz chain A
(very confident match)
coverage over query:
39-141,181-373,409-707
psy247 413 ID: B7ZMP1 (confident match)
name: Probable Xaa-Pro aminopeptidase 3
def:
source: Mus musculus (taxid: 10090)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
3-413
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
96-394
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2v3z chain A
(very confident match)
coverage over query:
2-142,205-323,348-413
psy2561 134 ID: Q1JPJ2 (confident match)
name: Xaa-Pro aminopeptidase 1
def: Contributes to the degradation of bradykinin. Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides, such as Arg-Pro-Pro.
source: Bos taurus (taxid: 9913)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:99.93 (hhsearch)
coverage over query:
3-112
 ID: PF00557
score: 99.70 (hhsearch)
coverage over query:
2-84
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3ctz chain A
(very confident match)
coverage over query:
2-131
psy6861 559 ID: Q6P1B1 (confident match)
name: Xaa-Pro aminopeptidase 1
def: Contributes to the degradation of bradykinin. Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides, such as Arg-Pro-Pro.
source: Mus musculus (taxid: 10090)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:99.97 (hhsearch)
coverage over query:
2-162
 ID: PF00557
score: 99.88 (hhsearch)
coverage over query:
2-140
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3ctz chain A
(very confident match)
coverage over query:
161-558
psy16135 332 ID: Q11136 (confident match)
name: Xaa-Pro dipeptidase
def: Splits dipeptides with a prolyl or hydroxyprolyl residue in the C-terminal position. Plays an important role in collagen metabolism because of the high level of iminoacids in collagen.
source: Mus musculus (taxid: 10090)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
8-290
 ID: PF00557
score: 99.98 (hhsearch)
coverage over query:
51-200
 ID: GO:0008239 (confident match)
name: dipeptidyl-peptidase activity
 PDB ID: 2iw2 chain A
(very confident match)
coverage over query:
32-291
psy16136 332 ID: Q11136 (confident match)
name: Xaa-Pro dipeptidase
def: Splits dipeptides with a prolyl or hydroxyprolyl residue in the C-terminal position. Plays an important role in collagen metabolism because of the high level of iminoacids in collagen.
source: Mus musculus (taxid: 10090)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
8-290
 ID: PF00557
score: 99.98 (hhsearch)
coverage over query:
51-200
 ID: GO:0008239 (confident match)
name: dipeptidyl-peptidase activity
 PDB ID: 2iw2 chain A
(very confident match)
coverage over query:
32-291
psy7579 289 ID: Q1JPJ2 (confident match)
name: Xaa-Pro aminopeptidase 1
def: Contributes to the degradation of bradykinin. Catalyzes the removal of a penultimate prolyl residue from the N-termini of peptides, such as Arg-Pro-Pro.
source: Bos taurus (taxid: 9913)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:98.59 (hhsearch)
coverage over query:
19-170
 ID: PF01321
score: 99.71 (hhsearch)
coverage over query:
24-169
 ID: GO:0010815 (confident match)
name: bradykinin catabolic process
 PDB ID: 3ctz chain A
(very confident match)
coverage over query:
19-160,229-289
psy9914 383 ID: P0A5J2 (portable match)
name: Methionine aminopeptidase 2
def: Removes the N-terminal methionine from nascent proteins, when the penultimate amino acid is alanine or proline, but enzyme activity is remarkably low when the second residue is phenylalanine or leucine. With glycine at the second position, Map is more active with a tetrapeptide than with a tripeptide.
source: Mycobacterium tuberculosis (taxid: 1773)
 ID: COG0006
name: PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
score:99.97 (hhsearch)
coverage over query:
83-314
 ID: PF05602
score: 100.00 (hhsearch)
coverage over query:
11-156
 no hit PDB ID: 3pka chain A
(very confident match)
coverage over query:
178-286
psy9410 736 ID: B4EV71 (confident match)
name: Glutamine--tRNA ligase
def:
source: Proteus mirabilis (strain HI4320) (taxid: 529507)
 ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
20-537
 ID: PF00749
score: 100.00 (hhsearch)
coverage over query:
19-353
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2hz7 chain A
(very confident match)
coverage over query:
19-540
psy17575 832 ID: Q9Y105 (very confident match)
name: Probable glutamine--tRNA ligase
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
320-808
 ID: PF00749
score: 100.00 (hhsearch)
coverage over query:
319-635
 ID: GO:0005829 (very confident match)
name: cytosol
 PDB ID: 4g6z chain A
(very confident match)
coverage over query:
317-556,573-640
psy2377 340 ID: A6SX06 (confident match)
name: Glutamate--tRNA ligase
def: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
source: Janthinobacterium sp. (strain Marseille) (taxid: 375286)
 ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
4-338
 ID: PF00749
score: 100.00 (hhsearch)
coverage over query:
3-311
 ID: GO:0008270 (confident match)
name: zinc ion binding
 PDB ID: 4g6z chain A
(very confident match)
coverage over query:
2-338
psy2381 350 ID: A6SX06 (confident match)
name: Glutamate--tRNA ligase
def: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
source: Janthinobacterium sp. (strain Marseille) (taxid: 375286)
 ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
4-336
 ID: PF00749
score: 100.00 (hhsearch)
coverage over query:
3-311
 ID: GO:0008270 (confident match)
name: zinc ion binding
 PDB ID: 4g6z chain A
(very confident match)
coverage over query:
2-337
psy16872 605 ID: P48525 (confident match)
name: Glutamate--tRNA ligase, mitochondrial
def: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
80-592
 ID: PF00749
score: 100.00 (hhsearch)
coverage over query:
80-419
 ID: GO:0050561 (confident match)
name: glutamate-tRNA(Gln) ligase activity
 PDB ID: 4g6z chain A
(very confident match)
coverage over query:
80-370,399-592
psy9414 582 ID: Q7VU94 (confident match)
name: Glutamine--tRNA ligase
def:
source: Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) (taxid: 257313)
 ID: COG0008
name: GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
8-381
 ID: PF03950
score: 100.00 (hhsearch)
coverage over query:
185-381
 ID: GO:0005737 (confident match)
name: cytoplasm
 PDB ID: 2hz7 chain A
(very confident match)
coverage over query:
1-383
psy198 245 ID: B0TLD6 (confident match)
name: tRNA threonylcarbamoyladenosine biosynthesis protein RimN
def: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
source: Shewanella halifaxensis (strain HAW-EB4) (taxid: 458817)
 ID: COG0009
name: SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
34-229
 ID: PF01300
score: 100.00 (hhsearch)
coverage over query:
42-219
 ID: GO:0051051 (confident match)
name: negative regulation of transport
 PDB ID: 1jcu chain A
(very confident match)
coverage over query:
30-224
psy17315 561 ID: Q2HJ33 (confident match)
name: Obg-like ATPase 1
def: Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.
source: Bos taurus (taxid: 9913)
 ID: COG0012
name: Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
96-551
 ID: PF06071
score: 100.00 (hhsearch)
coverage over query:
467-550
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2ohf chain A
(very confident match)
coverage over query:
88-182,270-323,345-555
psy17313 197 ID: Q8SWU7 (confident match)
name: GTP-binding protein CG1354
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0012
name: Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
6-187
 ID: PF06071
score: 100.00 (hhsearch)
coverage over query:
103-186
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2ohf chain A
(very confident match)
coverage over query:
6-191
psy2401 363 ID: P0ABU4 (very confident match)
name: GTP-dependent nucleic acid-binding protein EngD
def: GTP-dependent nucleic acid-binding protein which may act as a translation factor.
source: Shigella flexneri (taxid: 623)
 ID: COG0012
name: Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-363
 ID: PF06071
score: 100.00 (hhsearch)
coverage over query:
279-362
 ID: GO:0016887 (very confident match)
name: ATPase activity
 PDB ID: 2dby chain A
(very confident match)
coverage over query:
3-363
psy16314 854 ID: Q7MV54 (portable match)
name: Alanine--tRNA ligase
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
source: Porphyromonas gingivalis (strain ATCC BAA-308 / W83) (taxid: 242619)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-803
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
1-780
 ID: GO:0005737 (confident match)
name: cytoplasm
 PDB ID: 2zze chain A
(very confident match)
coverage over query:
1-123,159-160,172-178
,234-239,253-253
,313-338,353-444
,503-536,552-686
,700-803
psy6338 135 ID: P36428 (confident match)
name: Alanine--tRNA ligase
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-135
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
1-135
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1yfs chain A
(very confident match)
coverage over query:
1-135
psy13352 451 ID: Q2KY72 (confident match)
name: Alanine--tRNA ligase
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
source: Bordetella avium (strain 197N) (taxid: 360910)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-440
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
5-443
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2zze chain A
(very confident match)
coverage over query:
1-126,156-193,206-441
psy6339 925 ID: A6L1L8 (confident match)
name: Alanine--tRNA ligase
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
source: Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) (taxid: 435590)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-810
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
16-641
 no hit PDB ID: 2zze chain A
(very confident match)
coverage over query:
10-138,175-198,217-389
,418-536,568-791
psy16318 474 ID: Q8BGQ7 (portable match)
name: Alanine--tRNA ligase, cytoplasmic
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
source: Mus musculus (taxid: 10090)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
105-470
 ID: PF01411
score: 99.94 (hhsearch)
coverage over query:
10-305
 no hit PDB ID: 2e1b chain A
(very confident match)
coverage over query:
323-363,390-470
psy6337 797 ID: Q9VRJ1 (confident match)
name: Alanine--tRNA ligase, mitochondrial
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-785
 ID: PF01411
score: 100.00 (hhsearch)
coverage over query:
1-430
 no hit PDB ID: 2ztg chain A
(very confident match)
coverage over query:
5-176,205-325,357-580
psy6230 699 ID: Q9VLM8 (confident match)
name: Alanine--tRNA ligase, cytoplasmic
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
242-697
 ID: PF07973
score: 99.54 (hhsearch)
coverage over query:
103-162
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2ztg chain A
(very confident match)
coverage over query:
248-434,452-491
psy6340 158 ID: Q9RS27 (portable match)
name: Alanine--tRNA ligase
def: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
source: Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) (taxid: 243230)
 ID: COG0013
name: AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-156
 ID: PF07973
score: 99.73 (hhsearch)
coverage over query:
86-133
 ID: GO:0044444 (confident match)
name: cytoplasmic part
 PDB ID: 2zze chain A
(very confident match)
coverage over query:
1-138
psy11678 165 ID: Q9HX20 (portable match)
name: Gamma-glutamyl phosphate reductase
def: Catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate.
source: Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)
 ID: COG0014
name: ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
score:99.97 (hhsearch)
coverage over query:
13-154
 ID: PF00171
score: 93.75 (hhsearch)
coverage over query:
98-152
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 1o20 chain A
(very confident match)
coverage over query:
12-53,71-73,93-152
psy11680 135 ID: Q5R4M8 (confident match)
name: Delta-1-pyrroline-5-carboxylate synthase
def:
source: Pongo abelii (taxid: 9601)
 ID: COG0014
name: ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
35-117
 ID: PF00171
score: 95.16 (hhsearch)
coverage over query:
36-108
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2h5g chain A
(very confident match)
coverage over query:
36-134
psy11677 462 ID: Q97E63 (portable match)
name: Glutamate 5-kinase
def: Catalyzes the transfer of a phosphate group to glutamate to form glutamate 5-phosphate which rapidly cyclizes to 5-oxoproline.
source: Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)
 ID: COG0014
name: ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
148-414
 ID: PF00696
score: 99.53 (hhsearch)
coverage over query:
13-117
 no hit PDB ID: 2j5v chain A
(very confident match)
coverage over query:
15-143,154-194,207-223
psy11679 78 ID: Q7W9M7 (confident match)
name: Gamma-glutamyl phosphate reductase
def: Catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate.
source: Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) (taxid: 257311)
 ID: COG0014
name: ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
score:99.95 (hhsearch)
coverage over query:
2-60
 no hit ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1vlu chain A
(very confident match)
coverage over query:
2-77
psy6016 137 ID: P21265 (confident match)
name: Adenylosuccinate lyase
def:
source: Gallus gallus (taxid: 9031)
 ID: COG0015
name: PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
6-137
 ID: PF00206
score: 99.96 (hhsearch)
coverage over query:
7-137
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2j91 chain A
(very confident match)
coverage over query:
6-137
psy14320 253 ID: P21265 (portable match)
name: Adenylosuccinate lyase
def:
source: Gallus gallus (taxid: 9031)
 ID: COG0015
name: PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
score:99.70 (hhsearch)
coverage over query:
12-114
 ID: PF00206
score: 97.63 (hhsearch)
coverage over query:
15-114
 no hit PDB ID: 2j91 chain A
(very confident match)
coverage over query:
5-112
psy14321 124 ID: P21265 (confident match)
name: Adenylosuccinate lyase
def:
source: Gallus gallus (taxid: 9031)
 ID: COG0015
name: PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
score:99.82 (hhsearch)
coverage over query:
1-109
 ID: PF10397
score: 99.40 (hhsearch)
coverage over query:
42-94
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2j91 chain A
(very confident match)
coverage over query:
2-77
psy14322 97 ID: P21265 (confident match)
name: Adenylosuccinate lyase
def:
source: Gallus gallus (taxid: 9031)
 ID: COG0015
name: PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
score:94.56 (hhsearch)
coverage over query:
17-95
 ID: PF10397
score: 98.07 (hhsearch)
coverage over query:
56-96
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2j91 chain A
(very confident match)
coverage over query:
44-96
psy7414 320 ID: O16129 (confident match)
name: Probable phenylalanine--tRNA ligase, mitochondrial
def: Catalyzes direct attachment of p-Tyr (Tyr) to tRNAPhe. Permits also, with a lower efficiency, the attachment of m-Tyr to tRNAPhe, thereby opening the way for delivery of the misacylated tRNA to the ribosome and incorporation of ROS-damaged amino acid into proteins.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0016
name: PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
59-320
 ID: PF01409
score: 100.00 (hhsearch)
coverage over query:
58-320
 ID: GO:0000049 (confident match)
name: tRNA binding
 PDB ID: 3cmq chain A
(very confident match)
coverage over query:
35-198,216-216,231-319
psy7420 59 ID: Q6AYQ3 (confident match)
name: Phenylalanine--tRNA ligase, mitochondrial
def: Catalyzes direct attachment of p-Tyr (Tyr) to tRNAPhe. Permits also, with a lower efficiency, the attachment of m-Tyr to tRNAPhe, thereby opening the way for delivery of the misacylated tRNA to the ribosome and incorporation of ROS-damaged amino acid into proteins.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0016
name: PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
score:98.57 (hhsearch)
coverage over query:
1-22
 ID: PF01409
score: 98.86 (hhsearch)
coverage over query:
1-23
 ID: GO:0000049 (confident match)
name: tRNA binding
 PDB ID: 3cmq chain A
(very confident match)
coverage over query:
1-54
psy10346 292 ID: Q5ZJQ2 (confident match)
name: Phenylalanine--tRNA ligase alpha subunit
def:
source: Gallus gallus (taxid: 9031)
 ID: COG0016
name: PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
99-278
 ID: PF01409
score: 99.86 (hhsearch)
coverage over query:
205-280
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3l4g chain A
(very confident match)
coverage over query:
1-281
psy9576 338 ID: Q1GZS1 (very confident match)
name: Phenylalanine--tRNA ligase alpha subunit
def:
source: Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) (taxid: 265072)
 ID: COG0016
name: PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-336
 ID: PF01409
score: 100.00 (hhsearch)
coverage over query:
91-337
 ID: GO:0005886 (confident match)
name: plasma membrane
 PDB ID: 2rhq chain A
(very confident match)
coverage over query:
83-338
psy8087 658 ID: Q8BP47 (confident match)
name: Asparagine--tRNA ligase, cytoplasmic
def:
source: Mus musculus (taxid: 10090)
 ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
55-448
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
139-447
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 3m4p chain A
(very confident match)
coverage over query:
68-447
psy4384 661 ID: Q9UBL3 (confident match)
name: Set1/Ash2 histone methyltransferase complex subunit ASH2
def: Component of the Set1/Ash2 histone methyltransferase (HMT) complex, a complex that specifically methylates 'Lys-4' of histone H3, but not if the neighboring 'Lys-9' residue is already methylated. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. May function as a transcriptional regulator. May play a role in hematopoiesis.
source: Homo sapiens (taxid: 9606)
 ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
507-661
 ID: PF00152
score: 99.92 (hhsearch)
coverage over query:
504-660
 ID: GO:0048188 (confident match)
name: Set1C/COMPASS complex
 PDB ID: 3toj chain A
(very confident match)
coverage over query:
253-378,414-502
psy13182 194 ID: P15178 (portable match)
name: Aspartate--tRNA ligase, cytoplasmic
def: Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0017
name: AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
score:99.60 (hhsearch)
coverage over query:
66-177
 ID: PF01336
score: 98.79 (hhsearch)
coverage over query:
81-146
 ID: GO:0043229 (confident match)
name: intracellular organelle
 PDB ID: 3i7f chain A
(very confident match)
coverage over query:
42-187
psy15414 1458 ID: Q19825 (confident match)
name: Probable arginine--tRNA ligase, cytoplasmic
def: Forms part of a macromolecular complex that catalyzes the attachment of specific amino acids to cognate tRNAs during protein synthesis.
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0018
name: ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
476-1072
 ID: PF00750
score: 100.00 (hhsearch)
coverage over query:
587-933
 ID: GO:0000049 (confident match)
name: tRNA binding
 PDB ID: 1iq0 chain A
(very confident match)
coverage over query:
478-1072
psy6783 1119 ID: Q6P1S4 (confident match)
name: Arginine--tRNA ligase, cytoplasmic
def: Forms part of a macromolecular complex that catalyzes the attachment of specific amino acids to cognate tRNAs during protein synthesis.
source: Xenopus tropicalis (taxid: 8364)
 ID: COG0018
name: ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
205-1119
 ID: PF00750
score: 100.00 (hhsearch)
coverage over query:
317-830
 ID: GO:0000049 (confident match)
name: tRNA binding
 PDB ID: 2zue chain A
(very confident match)
coverage over query:
204-562,730-792,945-1119
psy6240 233 ID: Q02W95 (portable match)
name: Arginine--tRNA ligase
def:
source: Lactococcus lactis subsp. cremoris (strain SK11) (taxid: 272622)
 ID: COG0018
name: ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-232
 ID: PF00750
score: 100.00 (hhsearch)
coverage over query:
45-232
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 1iq0 chain A
(very confident match)
coverage over query:
1-151,178-232
psy5226 582 ID: A4G1E2 (very confident match)
name: Arginine--tRNA ligase
def:
source: Herminiimonas arsenicoxydans (taxid: 204773)
 ID: COG0018
name: ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
4-582
 ID: PF00750
score: 100.00 (hhsearch)
coverage over query:
104-449
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2zue chain A
(very confident match)
coverage over query:
1-582
psy695 214 ID: Q57N89 (portable match)
name: Arginine--tRNA ligase
def:
source: Salmonella choleraesuis (strain SC-B67) (taxid: 321314)
 ID: COG0018
name: ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:99.97 (hhsearch)
coverage over query:
9-167
 ID: PF03485
score: 99.74 (hhsearch)
coverage over query:
13-112
 ID: GO:0005737 (confident match)
name: cytoplasm
 no hit
psy6239 151 ID: Q8PX74 (portable match)
name: Arginine--tRNA ligase
def:
source: Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952)
 ID: COG0018
name: ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-151
 ID: PF05746
score: 100.00 (hhsearch)
coverage over query:
35-151
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2zue chain A
(very confident match)
coverage over query:
1-151
psy9378 522 ID: P00860 (confident match)
name: Ornithine decarboxylase
def:
source: Mus musculus (taxid: 10090)
 ID: COG0019
name: LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
189-522
 ID: PF02784
score: 100.00 (hhsearch)
coverage over query:
217-431
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 7odc chain A
(very confident match)
coverage over query:
209-522
psy16152 295 ID: Q99KU1 (confident match)
name: Dehydrodolichyl diphosphate synthase
def: Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein.
source: Mus musculus (taxid: 10090)
 ID: COG0020
name: UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
score:100.00 (hhsearch)
coverage over query:
24-257
 ID: PF01255
score: 100.00 (hhsearch)
coverage over query:
32-256
 ID: GO:0019408 (confident match)
name: dolichol biosynthetic process
 PDB ID: 3ugs chain B
(very confident match)
coverage over query:
23-256
psy4416 290 ID: Q6DHR8 (confident match)
name: Nogo-B receptor
def: Acts as a specific receptor for the N-terminus of Nogo-B, a neural and cardiovascular regulator.
source: Danio rerio (taxid: 7955)
 ID: COG0020
name: UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
score:100.00 (hhsearch)
coverage over query:
62-288
 ID: PF01255
score: 100.00 (hhsearch)
coverage over query:
70-287
 no hit PDB ID: 4h8e chain A
(confident match)
coverage over query:
59-152,163-288
psy10436 208 ID: P29401 (portable match)
name: Transketolase
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0021
name: TktA Transketolase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
26-208
 ID: PF02779
score: 99.83 (hhsearch)
coverage over query:
43-208
 ID: GO:0042803 (confident match)
name: protein homodimerization activity
 PDB ID: 3mos chain A
(very confident match)
coverage over query:
27-208
psy8699 325 ID: P21953 (very confident match)
name: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
def: The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
source: Homo sapiens (taxid: 9606)
 ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
8-325
 ID: PF02779
score: 100.00 (hhsearch)
coverage over query:
6-179
 ID: GO:0003826 (very confident match)
name: alpha-ketoacid dehydrogenase activity
 PDB ID: 2bfd chain B
(very confident match)
coverage over query:
9-325
psy10429 207 ID: Q9D051 (confident match)
name: Pyruvate dehydrogenase E1 component subunit beta, mitochondrial
def: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
source: Mus musculus (taxid: 10090)
 ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
1-207
 ID: PF02779
score: 100.00 (hhsearch)
coverage over query:
1-176
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2ozl chain B
(very confident match)
coverage over query:
1-207
psy8838 319 no hit ID: COG0022
name: AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
29-263
 ID: PF02779
score: 99.70 (hhsearch)
coverage over query:
28-207
 no hit PDB ID: 2bfd chain B
(confident match)
coverage over query:
27-109,124-287
psy14509 243 ID: Q2HJ47 (confident match)
name: Density-regulated protein
def: May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.
source: Bos taurus (taxid: 9913)
 ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.90 (hhsearch)
coverage over query:
135-216
 ID: PF01253
score: 99.88 (hhsearch)
coverage over query:
135-211
 ID: GO:0003743 (confident match)
name: translation initiation factor activity
 PDB ID: 2if1 chain A
(confident match)
coverage over query:
134-218
psy14758 134 ID: P42678 (confident match)
name: Protein translation factor SUI1 homolog
def: Probably involved in translation.
source: Anopheles gambiae (taxid: 7165)
 ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.89 (hhsearch)
coverage over query:
5-131
 ID: PF01253
score: 99.74 (hhsearch)
coverage over query:
28-131
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2if1 chain A
(very confident match)
coverage over query:
5-68,79-81,94-131
psy4461 95 ID: P42678 (very confident match)
name: Protein translation factor SUI1 homolog
def: Probably involved in translation.
source: Anopheles gambiae (taxid: 7165)
 ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.96 (hhsearch)
coverage over query:
11-93
 ID: PF01253
score: 99.93 (hhsearch)
coverage over query:
11-87
 ID: GO:0071456 (very confident match)
name: cellular response to hypoxia
 PDB ID: 2if1 chain A
(very confident match)
coverage over query:
12-95
psy14757 90 ID: P42678 (very confident match)
name: Protein translation factor SUI1 homolog
def: Probably involved in translation.
source: Anopheles gambiae (taxid: 7165)
 ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.80 (hhsearch)
coverage over query:
12-76
 ID: PF01253
score: 99.67 (hhsearch)
coverage over query:
13-76
 ID: GO:0071456 (confident match)
name: cellular response to hypoxia
 PDB ID: 2if1 chain A
(very confident match)
coverage over query:
1-77
psy14756 117 ID: P42678 (very confident match)
name: Protein translation factor SUI1 homolog
def: Probably involved in translation.
source: Anopheles gambiae (taxid: 7165)
 ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.97 (hhsearch)
coverage over query:
12-115
 ID: PF01253
score: 99.94 (hhsearch)
coverage over query:
30-109
 no hit PDB ID: 2if1 chain A
(very confident match)
coverage over query:
8-117
psy8931 95 ID: Q61211 (portable match)
name: Eukaryotic translation initiation factor 2D
def: Translation initiation factor that is able to deliver tRNA to the P-site of the eukaryotic ribosome in a GTP-independent manner. The binding of Met-tRNA(I) occurs after the AUG codon finds its position in the P-site of 40S ribosomes, the situation that takes place during initiation complex formation on some specific RNAs. Its activity in tRNA binding with 40S subunits does not require the presence of the aminoacyl moiety. Possesses the unique ability to deliver non-Met (elongator) tRNAs into the P-site of the 40S subunit. In addition to its role in initiation, can promote release of deacylated tRNA and mRNA from recycled 40S subunits following ABCE1-mediated dissociation of post-termination ribosomal complexes into subunits.
source: Mus musculus (taxid: 10090)
 ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.95 (hhsearch)
coverage over query:
4-86
 ID: PF01253
score: 99.97 (hhsearch)
coverage over query:
2-82
 no hit PDB ID: 2ogh chain A
(very confident match)
coverage over query:
2-88
psy14668 266 ID: Q9NAH4 (portable match)
name: Density-regulated protein homolog
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0023
name: SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
score:99.86 (hhsearch)
coverage over query:
104-191
 ID: PF01253
score: 99.80 (hhsearch)
coverage over query:
106-186
 no hit PDB ID: 1d1r chain A
(confident match)
coverage over query:
101-193
psy9913 309 ID: P0A5J2 (confident match)
name: Methionine aminopeptidase 2
def: Removes the N-terminal methionine from nascent proteins, when the penultimate amino acid is alanine or proline, but enzyme activity is remarkably low when the second residue is phenylalanine or leucine. With glycine at the second position, Map is more active with a tetrapeptide than with a tripeptide.
source: Mycobacterium tuberculosis (taxid: 1773)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
19-309
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
27-301
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
16-179,227-309
psy11713 769 ID: P53582 (confident match)
name: Methionine aminopeptidase 1
def: Removes the N-terminal methionine from nascent proteins. Required for normal progression through the cell cycle.
source: Homo sapiens (taxid: 9606)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
479-745
 ID: PF00557
score: 99.98 (hhsearch)
coverage over query:
482-730
 ID: GO:0006508 (confident match)
name: proteolysis
 PDB ID: 2b3h chain A
(very confident match)
coverage over query:
248-411
psy3761 256 ID: Q9ZCD3 (very confident match)
name: Methionine aminopeptidase
def: Removes the N-terminal methionine from nascent proteins.
source: Rickettsia prowazekii (strain Madrid E) (taxid: 272947)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-245
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
1-234
 ID: GO:0008198 (very confident match)
name: ferrous iron binding
 PDB ID: 3pka chain A
(very confident match)
coverage over query:
1-242
psy15498 635 ID: P50579 (confident match)
name: Methionine aminopeptidase 2
def: Protects eukaryotic initiation factor EIF2S1 from translation-inhibiting phosphorylation by inhibitory kinases such as EIF2AK2/PKR and EIF2AK1/HCR. Plays a critical role in the regulation of protein synthesis.
source: Homo sapiens (taxid: 9606)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
316-635
 ID: PF00557
score: 99.97 (hhsearch)
coverage over query:
324-525
 ID: GO:0008235 (confident match)
name: metalloexopeptidase activity
 PDB ID: 1b6a chain A
(very confident match)
coverage over query:
85-245,274-276,426-635
psy15502 99 ID: P50579 (confident match)
name: Methionine aminopeptidase 2
def: Protects eukaryotic initiation factor EIF2S1 from translation-inhibiting phosphorylation by inhibitory kinases such as EIF2AK2/PKR and EIF2AK1/HCR. Plays a critical role in the regulation of protein synthesis.
source: Homo sapiens (taxid: 9606)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:99.60 (hhsearch)
coverage over query:
27-83
 ID: PF00557
score: 97.03 (hhsearch)
coverage over query:
39-79
 ID: GO:0008235 (confident match)
name: metalloexopeptidase activity
 PDB ID: 1b6a chain A
(very confident match)
coverage over query:
42-99
psy18115 365 ID: P50580 (very confident match)
name: Proliferation-associated protein 2G4
def: May play a role in a ERBB3-regulated signal transduction pathway. Seems be involved in growth regulation. Acts a corepressor of the androgen receptor (AR) and is regulated by the ERBB3 ligand neuregulin-1/heregulin (HRG). Inhibits transcription of some E2F1-regulated promoters, probably by recruiting histone acetylase (HAT) activity. Binds RNA. Associates with 28S, 18S and 5.8S mature rRNAs, several rRNA precursors and probably U3 small nucleolar RNA. May be involved in regulation of intermediate and late steps of rRNA processing. May be involved in ribosome assembly (By similarity). Mediates cap-independent translation of specific viral IRESs (internal ribosomal entry site). Together with PTBP1 is required for the translation initiation on the foot-and-mouth disease virus (FMDV) IRES.
source: Mus musculus (taxid: 10090)
 ID: COG0024
name: Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
13-338
 ID: PF00557
score: 100.00 (hhsearch)
coverage over query:
21-232
 ID: GO:0045892 (very confident match)
name: negative regulation of transcription, DNA-dependent
 PDB ID: 2q8k chain A
(very confident match)
coverage over query:
9-365
psy16350 469 ID: Q552S0 (portable match)
name: Sodium/hydrogen exchanger 1
def: Regulation of intracellular pH homeostasis in response to cAMP, which is essential for chemotaxis. Necessary for F-actin localization and the kinetics of actin polymerization during chemotaxis and cell polarity but not for directional sensing.
source: Dictyostelium discoideum (taxid: 44689)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:99.96 (hhsearch)
coverage over query:
240-466
 ID: PF00999
score: 99.56 (hhsearch)
coverage over query:
242-445
 ID: GO:0005773 (confident match)
name: vacuole
 PDB ID: 1y4e chain A
(confident match)
coverage over query:
78-104
psy14648 154 ID: Q8R4D1 (confident match)
name: Sodium/hydrogen exchanger 8
def: Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.
source: Mus musculus (taxid: 10090)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:99.83 (hhsearch)
coverage over query:
2-138
 ID: PF00999
score: 98.45 (hhsearch)
coverage over query:
6-124
 ID: GO:0015386 (confident match)
name: potassium:hydrogen antiporter activity
 PDB ID: 2kbv chain A
(portable match)
coverage over query:
67-91
psy5406 523 ID: Q8R4D1 (confident match)
name: Sodium/hydrogen exchanger 8
def: Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.
source: Mus musculus (taxid: 10090)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
118-505
 ID: PF00999
score: 99.96 (hhsearch)
coverage over query:
129-494
 ID: GO:0031090 (confident match)
name: organelle membrane
 PDB ID: 1zcd chain A
(portable match)
coverage over query:
183-460
psy1930 195 ID: P50482 (confident match)
name: Sodium/hydrogen exchanger 2
def: Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Seems to play an important role in colonic sodium absorption.
source: Oryctolagus cuniculus (taxid: 9986)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:99.90 (hhsearch)
coverage over query:
28-195
 ID: PF00999
score: 99.32 (hhsearch)
coverage over query:
28-195
 no hit no hit
psy6190 87 ID: P48762 (confident match)
name: Sodium/hydrogen exchanger 1
def: Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.
source: Sus scrofa (taxid: 9823)
 ID: COG0025
name: NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
score:96.67 (hhsearch)
coverage over query:
4-83
 no hit no hit PDB ID: 2kbv chain A
(portable match)
coverage over query:
70-83
psy14417 120 ID: Q9Y7M1 (portable match)
name: Putative 2-hydroxyacyl-CoA lyase
def: Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde.
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0028
name: IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
score:99.79 (hhsearch)
coverage over query:
1-114
 ID: PF00205
score: 99.84 (hhsearch)
coverage over query:
1-84
 ID: GO:0044444 (confident match)
name: cytoplasmic part
 PDB ID: 1ybh chain A
(very confident match)
coverage over query:
1-114
psy14416 1065 ID: Q9Y7M1 (portable match)
name: Putative 2-hydroxyacyl-CoA lyase
def: Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde.
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0028
name: IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
267-1053
 ID: PF02776
score: 100.00 (hhsearch)
coverage over query:
267-435
 no hit PDB ID: 2q28 chain A
(very confident match)
coverage over query:
6-160
psy15089 661 ID: Q94523 (very confident match)
name: Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
def: Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). Maintaining electron transport chain function is required to prevent neurodegenerative changes seen in both early- and late-onset disorders.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0029
name: NadB Aspartate oxidase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
60-628
 ID: PF00890
score: 100.00 (hhsearch)
coverage over query:
60-454
 ID: GO:0005749 (very confident match)
name: mitochondrial respiratory chain complex II
 PDB ID: 2h88 chain A
(very confident match)
coverage over query:
50-661
psy9575 786 ID: Q9UTJ7 (confident match)
name: Probable succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
def: Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0029
name: NadB Aspartate oxidase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
1-541
 ID: PF00890
score: 100.00 (hhsearch)
coverage over query:
1-384
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1kf6 chain A
(very confident match)
coverage over query:
1-567
psy13718 165 ID: Q9VTM5 (portable match)
name: Dimethyladenosine transferase 1, mitochondrial
def: Probable S-adenosyl-L-methionine-dependent methyltransferase which specifically dimethylates mitochondrial 12S rRNA at the conserved stem loop. In contrast to mtTFB2, it does not have a critical role in either transcription or regulation of the copy number of mitochondrial DNA.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0030
name: KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-126
 ID: PF00398
score: 99.96 (hhsearch)
coverage over query:
1-125
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 3uzu chain A
(very confident match)
coverage over query:
1-125
psy17126 240 ID: Q1RK29 (confident match)
name: Ribosomal RNA small subunit methyltransferase A
def: Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
source: Rickettsia bellii (strain RML369-C) (taxid: 336407)
 ID: COG0030
name: KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
23-200
 ID: PF00398
score: 99.95 (hhsearch)
coverage over query:
23-152
 ID: GO:0042645 (confident match)
name: mitochondrial nucleoid
 PDB ID: 3fut chain A
(very confident match)
coverage over query:
8-117,130-200
psy17134 89 ID: Q811P6 (portable match)
name: Dimethyladenosine transferase 1, mitochondrial
def: S-adenosyl-L-methionine-dependent methyltransferase which specifically dimethylates mitochondrial 12S rRNA at the conserved stem loop. Also required for basal transcription of mitochondrial DNA, probably via its interaction with POLRMT and TFAM. Stimulates transcription independently of the methyltransferase activity.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0030
name: KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
score:94.39 (hhsearch)
coverage over query:
18-49
 ID: PF00398
score: 94.86 (hhsearch)
coverage over query:
5-49
 no hit PDB ID: 1yub chain A
(portable match)
coverage over query:
21-53
psy14801 404 ID: P46794 (confident match)
name: Cystathionine beta-synthase
def:
source: Dictyostelium discoideum (taxid: 44689)
 ID: COG0031
name: CysK Cysteine synthase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
17-321
 ID: PF00291
score: 100.00 (hhsearch)
coverage over query:
17-314
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1jbq chain A
(very confident match)
coverage over query:
17-297,357-397
psy240 376 ID: Q06203 (confident match)
name: Amidophosphoribosyltransferase
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0034
name: PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
18-358
 ID: PF00310
score: 99.94 (hhsearch)
coverage over query:
70-220
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1ecf chain A
(very confident match)
coverage over query:
22-222,236-246,258-262
,274-333
psy4430 84 ID: Q6NYU7 (confident match)
name: Uracil phosphoribosyltransferase homolog
def:
source: Danio rerio (taxid: 7955)
 ID: COG0035
name: Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
score:99.91 (hhsearch)
coverage over query:
11-83
 ID: PF14681
score: 99.89 (hhsearch)
coverage over query:
4-84
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1bd3 chain D
(very confident match)
coverage over query:
4-83
psy4429 186 ID: Q6NYU7 (confident match)
name: Uracil phosphoribosyltransferase homolog
def:
source: Danio rerio (taxid: 7955)
 ID: COG0035
name: Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
26-186
 ID: PF14681
score: 100.00 (hhsearch)
coverage over query:
32-186
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1bd3 chain D
(very confident match)
coverage over query:
18-125,153-186
psy9632 83 ID: Q9NWZ5 (confident match)
name: Uridine-cytidine kinase-like 1
def: May contribute to UTP accumulation needed for blast transformation and proliferation.
source: Homo sapiens (taxid: 9606)
 ID: COG0035
name: Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
score:99.89 (hhsearch)
coverage over query:
1-53
 ID: PF14681
score: 99.90 (hhsearch)
coverage over query:
1-52
 no hit PDB ID: 1bd3 chain D
(very confident match)
coverage over query:
1-53
psy11600 277 ID: Q96AT9 (confident match)
name: Ribulose-phosphate 3-epimerase
def: Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.
source: Homo sapiens (taxid: 9606)
 ID: COG0036
name: Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
5-255
 ID: PF00834
score: 100.00 (hhsearch)
coverage over query:
7-243
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1h1y chain A
(very confident match)
coverage over query:
4-99,143-254
psy11601 82 ID: Q9SE42 (confident match)
name: Ribulose-phosphate 3-epimerase, cytoplasmic isoform
def: Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0036
name: Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
score:99.93 (hhsearch)
coverage over query:
1-79
 ID: PF00834
score: 99.86 (hhsearch)
coverage over query:
1-64
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1rpx chain A
(very confident match)
coverage over query:
1-78
psy16399 165 ID: Q6FMB5 (confident match)
name: Cytoplasmic tRNA 2-thiolation protein 1
def: Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation.
source: Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)
 ID: COG0037
name: MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
score:99.33 (hhsearch)
coverage over query:
104-165
 ID: PF01171
score: 98.46 (hhsearch)
coverage over query:
16-60
 ID: GO:0002144 (confident match)
name: cytosolic tRNA wobble base thiouridylase complex
 PDB ID: 1wy5 chain A
(confident match)
coverage over query:
103-165
psy16535 333 ID: Q6FMB5 (confident match)
name: Cytoplasmic tRNA 2-thiolation protein 1
def: Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation.
source: Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)
 ID: COG0037
name: MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
score:99.95 (hhsearch)
coverage over query:
36-233
 ID: PF01171
score: 99.96 (hhsearch)
coverage over query:
17-176
 ID: GO:0002144 (confident match)
name: cytosolic tRNA wobble base thiouridylase complex
 PDB ID: 1wy5 chain A
(very confident match)
coverage over query:
29-296
psy3867 521 ID: Q28ES8 (confident match)
name: Cytoplasmic tRNA 2-thiolation protein 2
def: Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with atpbd3/ncs6 that ligates sulfur from thiocarboxylated urm1 onto the uridine of tRNAs at wobble position.
source: Xenopus tropicalis (taxid: 8364)
 ID: COG0037
name: MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
score:99.96 (hhsearch)
coverage over query:
86-375
 ID: PF01171
score: 99.96 (hhsearch)
coverage over query:
110-334
 no hit PDB ID: 1wy5 chain A
(confident match)
coverage over query:
86-199,222-361
psy3866 70 ID: Q28ES8 (portable match)
name: Cytoplasmic tRNA 2-thiolation protein 2
def: Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with atpbd3/ncs6 that ligates sulfur from thiocarboxylated urm1 onto the uridine of tRNAs at wobble position.
source: Xenopus tropicalis (taxid: 8364)
 ID: COG0037
name: MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
score:99.39 (hhsearch)
coverage over query:
5-55
 ID: PF01171
score: 99.46 (hhsearch)
coverage over query:
7-57
 no hit PDB ID: 1wy5 chain A
(very confident match)
coverage over query:
1-51
psy6631 704 ID: P35523 (confident match)
name: Chloride channel protein 1
def: Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport.
source: Homo sapiens (taxid: 9606)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
52-406
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
52-389
 ID: GO:0005254 (confident match)
name: chloride channel activity
 PDB ID: 3org chain A
(very confident match)
coverage over query:
33-255,272-462,475-549
psy15907 260 ID: P51798 (confident match)
name: H(+)/Cl(-) exchange transporter 7
def: Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen.
source: Homo sapiens (taxid: 9606)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-227
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
3-229
 ID: GO:0005622 (confident match)
name: intracellular
 PDB ID: 1ots chain A
(very confident match)
coverage over query:
4-47,59-229
psy6634 90 ID: Q9VGH7 (very confident match)
name: Chloride channel protein 2
def: Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:99.38 (hhsearch)
coverage over query:
14-79
 ID: PF00654
score: 99.46 (hhsearch)
coverage over query:
15-84
 ID: GO:0006821 (confident match)
name: chloride transport
 PDB ID: 3org chain A
(very confident match)
coverage over query:
14-78
psy15906 352 ID: P51798 (portable match)
name: H(+)/Cl(-) exchange transporter 7
def: Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen.
source: Homo sapiens (taxid: 9606)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:99.90 (hhsearch)
coverage over query:
38-185
 ID: PF00654
score: 99.91 (hhsearch)
coverage over query:
36-166
 ID: GO:0031090 (confident match)
name: organelle membrane
 PDB ID: 3org chain A
(very confident match)
coverage over query:
40-296
psy4183 898 ID: Q9R279 (confident match)
name: H(+)/Cl(-) exchange transporter 3
def: Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the endosome and synaptic vesicle lumen, and may thereby affect vesicle trafficking and exocytosis. May play an important role in neuronal cell function through regulation of membrane excitability by protein kinase C. It could help neuronal cells to establish short-term memory.
source: Cavia porcellus (taxid: 10141)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
264-649
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
267-637
 ID: GO:0045177 (confident match)
name: apical part of cell
 PDB ID: 1ots chain A
(very confident match)
coverage over query:
259-566,578-647
psy880 263 ID: P51788 (confident match)
name: Chloride channel protein 2
def: Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport.
source: Homo sapiens (taxid: 9606)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:99.91 (hhsearch)
coverage over query:
138-263
 ID: PF00654
score: 99.89 (hhsearch)
coverage over query:
148-263
 no hit PDB ID: 3org chain A
(very confident match)
coverage over query:
111-263
psy15908 354 ID: P51798 (portable match)
name: H(+)/Cl(-) exchange transporter 7
def: Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen.
source: Homo sapiens (taxid: 9606)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:98.92 (hhsearch)
coverage over query:
228-353
 ID: PF00654
score: 98.56 (hhsearch)
coverage over query:
294-353
 no hit PDB ID: 1ots chain A
(confident match)
coverage over query:
232-353
psy15912 482 ID: P51798 (portable match)
name: H(+)/Cl(-) exchange transporter 7
def: Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen.
source: Homo sapiens (taxid: 9606)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:99.83 (hhsearch)
coverage over query:
62-203
 ID: PF00654
score: 99.78 (hhsearch)
coverage over query:
21-184
 no hit PDB ID: 3org chain A
(very confident match)
coverage over query:
25-65,99-253,297-331
,348-463
psy13217 422 ID: Q64347 (portable match)
name: Chloride channel protein 1
def: Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport.
source: Mus musculus (taxid: 10090)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
77-376
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
133-377
 no hit PDB ID: 3nd0 chain A
(very confident match)
coverage over query:
48-292,308-376
psy9748 1359 ID: Q9R279 (portable match)
name: H(+)/Cl(-) exchange transporter 3
def: Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the endosome and synaptic vesicle lumen, and may thereby affect vesicle trafficking and exocytosis. May play an important role in neuronal cell function through regulation of membrane excitability by protein kinase C. It could help neuronal cells to establish short-term memory.
source: Cavia porcellus (taxid: 10141)
 ID: COG0038
name: EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
130-807
 ID: PF00654
score: 100.00 (hhsearch)
coverage over query:
124-787
 no hit PDB ID: 2j9l chain A
(very confident match)
coverage over query:
806-974
psy14621 248 ID: P00346 (confident match)
name: Malate dehydrogenase, mitochondrial
def:
source: Sus scrofa (taxid: 9823)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
34-246
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
94-245
 ID: GO:0005730 (confident match)
name: nucleolus
 PDB ID: 1mld chain A
(very confident match)
coverage over query:
34-248
psy9582 329 ID: Q2L068 (very confident match)
name: Malate dehydrogenase
def: Catalyzes the reversible oxidation of malate to oxaloacetate.
source: Bordetella avium (strain 197N) (taxid: 360910)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
6-328
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
159-327
 ID: GO:0005829 (very confident match)
name: cytosol
 PDB ID: 1b8p chain A
(very confident match)
coverage over query:
1-328
psy9933 208 ID: Q5NVR2 (confident match)
name: Malate dehydrogenase, mitochondrial
def:
source: Pongo abelii (taxid: 9601)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
1-205
 ID: PF02866
score: 99.98 (hhsearch)
coverage over query:
63-205
 ID: GO:0006475 (confident match)
name: internal protein amino acid acetylation
 PDB ID: 1mld chain A
(very confident match)
coverage over query:
1-207
psy17689 216 ID: P06151 (confident match)
name: L-lactate dehydrogenase A chain
def:
source: Mus musculus (taxid: 10090)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
2-216
 ID: PF02866
score: 99.97 (hhsearch)
coverage over query:
101-216
 ID: GO:0031668 (confident match)
name: cellular response to extracellular stimulus
 PDB ID: 4aj2 chain A
(very confident match)
coverage over query:
3-216
psy12825 488 ID: Q95028 (confident match)
name: L-lactate dehydrogenase
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
178-487
 ID: PF02866
score: 100.00 (hhsearch)
coverage over query:
320-487
 ID: GO:0031668 (confident match)
name: cellular response to extracellular stimulus
 PDB ID: 3ldh chain A
(very confident match)
coverage over query:
163-372,385-487
psy12084 232 ID: P14152 (portable match)
name: Malate dehydrogenase, cytoplasmic
def:
source: Mus musculus (taxid: 10090)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:99.96 (hhsearch)
coverage over query:
1-224
 ID: PF02866
score: 99.96 (hhsearch)
coverage over query:
2-223
 no hit PDB ID: 1b8p chain A
(very confident match)
coverage over query:
1-72,98-114,147-224
psy17699 149 ID: Q95028 (portable match)
name: L-lactate dehydrogenase
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:99.93 (hhsearch)
coverage over query:
16-121
 ID: PF02866
score: 99.93 (hhsearch)
coverage over query:
19-120
 no hit PDB ID: 3ldh chain A
(very confident match)
coverage over query:
18-118
psy17692 211 ID: Q95028 (portable match)
name: L-lactate dehydrogenase
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0039
name: Mdh Malate/lactate dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
7-161
 ID: PF02866
score: 99.93 (hhsearch)
coverage over query:
33-158
 no hit PDB ID: 3ldh chain A
(very confident match)
coverage over query:
8-160
psy18231 540 ID: Q5XGI5 (portable match)
name: WD repeat domain-containing protein 83
def: Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha.
source: Xenopus tropicalis (taxid: 8364)
 ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:99.94 (hhsearch)
coverage over query:
10-123
 ID: PF01207
score: 99.92 (hhsearch)
coverage over query:
19-123
 ID: GO:0000375 (confident match)
name: RNA splicing, via transesterification reactions
 no hit
psy4403 101 ID: Q9NX74 (portable match)
name: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like
def: Dihydrouridine synthase. Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
source: Homo sapiens (taxid: 9606)
 ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:99.85 (hhsearch)
coverage over query:
1-100
 ID: PF01207
score: 99.80 (hhsearch)
coverage over query:
1-100
 ID: GO:0005737 (confident match)
name: cytoplasm
 PDB ID: 3b0p chain A
(confident match)
coverage over query:
1-100
psy2386 311 ID: Q87L85 (very confident match)
name: tRNA-dihydrouridine synthase A
def: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
source: Vibrio parahaemolyticus (taxid: 670)
 ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-308
 ID: PF01207
score: 100.00 (hhsearch)
coverage over query:
1-307
 ID: GO:0008152 (confident match)
name: metabolic process
 PDB ID: 1vhn chain A
(very confident match)
coverage over query:
1-308
psy4398 306 ID: O52536 (confident match)
name: tRNA-dihydrouridine synthase B
def: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
source: Klebsiella pneumoniae (taxid: 573)
 ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
22-263
 ID: PF01207
score: 100.00 (hhsearch)
coverage over query:
34-263
 ID: GO:0050660 (confident match)
name: flavin adenine dinucleotide binding
 PDB ID: 3b0p chain A
(very confident match)
coverage over query:
28-74,92-265
psy7343 487 ID: Q8K582 (confident match)
name: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
def: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
78-443
 ID: PF01207
score: 100.00 (hhsearch)
coverage over query:
152-438
 ID: GO:0055114 (confident match)
name: oxidation-reduction process
 PDB ID: 1vhn chain A
(very confident match)
coverage over query:
148-443
psy17868 208 ID: O95620 (portable match)
name: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
def: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
source: Homo sapiens (taxid: 9606)
 ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:96.26 (hhsearch)
coverage over query:
1-74
 ID: PF01207
score: 97.10 (hhsearch)
coverage over query:
1-75
 no hit PDB ID: 3b0p chain A
(portable match)
coverage over query:
1-74
psy9518 132 ID: Q28BT8 (confident match)
name: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
def: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
source: Xenopus tropicalis (taxid: 8364)
 ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:99.67 (hhsearch)
coverage over query:
1-99
 ID: PF01207
score: 99.59 (hhsearch)
coverage over query:
1-98
 no hit PDB ID: 1vhn chain A
(confident match)
coverage over query:
1-100
psy9514 611 ID: Q6C4K3 (confident match)
name: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
def: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs.
source: Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)
 ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
250-593
 ID: PF01207
score: 100.00 (hhsearch)
coverage over query:
262-592
 no hit PDB ID: 1vhn chain A
(very confident match)
coverage over query:
255-324,380-482,532-595
psy7344 240 ID: Q8K582 (portable match)
name: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
def: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0042
name: tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
score:99.97 (hhsearch)
coverage over query:
60-239
 ID: PF01207
score: 99.97 (hhsearch)
coverage over query:
68-239
 no hit PDB ID: 3b0p chain A
(very confident match)
coverage over query:
63-180,192-229
psy6858 592 ID: Q9EQF5 (confident match)
name: Dihydropyrimidinase
def: Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate.
source: Mus musculus (taxid: 10090)
 ID: COG0044
name: PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
19-471
 ID: PF13147
score: 99.84 (hhsearch)
coverage over query:
63-419
 ID: GO:0005829 (very confident match)
name: cytosol
 PDB ID: 3dc8 chain A
(very confident match)
coverage over query:
19-517
psy10113 596 ID: Q9EQF5 (confident match)
name: Dihydropyrimidinase
def: Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate.
source: Mus musculus (taxid: 10090)
 ID: COG0044
name: PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
19-471
 ID: PF13147
score: 99.85 (hhsearch)
coverage over query:
63-419
 ID: GO:0005829 (very confident match)
name: cytosol
 PDB ID: 3dc8 chain A
(very confident match)
coverage over query:
19-509
psy16949 232 ID: P53396 (confident match)
name: ATP-citrate synthase
def: ATP citrate-lyase is the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues. Has a central role in de novo lipid synthesis. In nervous tissue it may be involved in the biosynthesis of acetylcholine.
source: Homo sapiens (taxid: 9606)
 ID: COG0045
name: SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
10-231
 ID: PF08442
score: 99.92 (hhsearch)
coverage over query:
3-103
 ID: GO:0006101 (confident match)
name: citrate metabolic process
 PDB ID: 3mwd chain A
(very confident match)
coverage over query:
2-231
psy3769 974 ID: A4G230 (confident match)
name: Succinyl-CoA ligase [ADP-forming] subunit beta
def:
source: Herminiimonas arsenicoxydans (taxid: 204773)
 ID: COG0045
name: SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
1-345
 ID: PF08442
score: 100.00 (hhsearch)
coverage over query:
2-203
 ID: GO:0006104 (confident match)
name: succinyl-CoA metabolic process
 PDB ID: 1oi7 chain A
(very confident match)
coverage over query:
312-586
psy7785 525 ID: Q3MHX5 (confident match)
name: Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial
def: Catalyzes the GTP-dependent ligation of succinate and CoA to form succinyl-CoA.
source: Bos taurus (taxid: 9913)
 ID: COG0045
name: SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
11-430
 ID: PF08442
score: 100.00 (hhsearch)
coverage over query:
11-248
 ID: GO:0006104 (confident match)
name: succinyl-CoA metabolic process
 PDB ID: 2fp4 chain B
(very confident match)
coverage over query:
11-181,215-430
psy12143 443 ID: P53588 (very confident match)
name: Probable succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0045
name: SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
34-425
 ID: PF13549
score: 100.00 (hhsearch)
coverage over query:
31-257
 ID: GO:0005813 (very confident match)
name: centrosome
 PDB ID: 3ufx chain B
(very confident match)
coverage over query:
34-425
psy5568 685 ID: Q5SUR0 (portable match)
name: Phosphoribosylformylglycinamidine synthase
def:
source: Mus musculus (taxid: 10090)
 ID: COG0046
name: PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
225-680
 ID: PF02769
score: 98.92 (hhsearch)
coverage over query:
598-681
 no hit PDB ID: 3ugj chain A
(very confident match)
coverage over query:
89-532,543-681
psy5570 875 ID: Q5SUR0 (portable match)
name: Phosphoribosylformylglycinamidine synthase
def:
source: Mus musculus (taxid: 10090)
 ID: COG0046
name: PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-596
 ID: PF13507
score: 100.00 (hhsearch)
coverage over query:
670-834
 ID: GO:0003735 (confident match)
name: structural constituent of ribosome
 PDB ID: 3ugj chain A
(very confident match)
coverage over query:
1-181,192-249,279-285
,369-378,393-491
,516-637,659-834
psy2354 749 ID: Q5SUR0 (portable match)
name: Phosphoribosylformylglycinamidine synthase
def:
source: Mus musculus (taxid: 10090)
 ID: COG0046
name: PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
176-742
 ID: PF13507
score: 99.90 (hhsearch)
coverage over query:
535-649
 no hit PDB ID: 3ugj chain A
(very confident match)
coverage over query:
281-322,333-486,516-536
,552-749
psy2262 137 ID: Q29RU1 (very confident match)
name: 28S ribosomal protein S12, mitochondrial
def:
source: Bos taurus (taxid: 9913)
 ID: COG0048
name: RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
16-133
 ID: PF00164
score: 100.00 (hhsearch)
coverage over query:
23-133
 ID: GO:0001666 (very confident match)
name: response to hypoxia
 PDB ID: 2xzm chain L
(very confident match)
coverage over query:
42-120
psy4801 143 ID: Q8T3U2 (very confident match)
name: 40S ribosomal protein S23
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0048
name: RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
7-142
 ID: PF00164
score: 100.00 (hhsearch)
coverage over query:
29-142
 ID: GO:0022627 (very confident match)
name: cytosolic small ribosomal subunit
 PDB ID: 2xzm chain L
(very confident match)
coverage over query:
1-140
psy7476 143 ID: Q8T3U2 (very confident match)
name: 40S ribosomal protein S23
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0048
name: RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
7-142
 ID: PF00164
score: 100.00 (hhsearch)
coverage over query:
29-142
 ID: GO:0022627 (very confident match)
name: cytosolic small ribosomal subunit
 PDB ID: 2xzm chain L
(very confident match)
coverage over query:
1-140
psy16455 82 ID: B4U739 (confident match)
name: 30S ribosomal protein S12
def: Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
source: Hydrogenobaculum sp. (strain Y04AAS1) (taxid: 380749)
 ID: COG0048
name: RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
score:99.98 (hhsearch)
coverage over query:
3-79
 ID: PF00164
score: 100.00 (hhsearch)
coverage over query:
9-79
 ID: GO:0034337 (confident match)
name: RNA folding
 PDB ID: 2vqe chain L
(very confident match)
coverage over query:
2-79
psy4237 225 ID: Q95Q11 (confident match)
name: 28S ribosomal protein S7, mitochondrial
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0049
name: RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
63-217
 ID: PF00177
score: 100.00 (hhsearch)
coverage over query:
65-217
 ID: GO:0003723 (confident match)
name: RNA binding
 PDB ID: 1rss chain A
(very confident match)
coverage over query:
64-104,121-224
psy10065 215 ID: Q5E988 (very confident match)
name: 40S ribosomal protein S5
def:
source: Bos taurus (taxid: 9913)
 ID: COG0049
name: RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
77-215
 ID: PF00177
score: 100.00 (hhsearch)
coverage over query:
77-214
 ID: GO:0005576 (very confident match)
name: extracellular region
 PDB ID: 2zkq chain g
(very confident match)
coverage over query:
41-214
psy10067 124 ID: Q9ZUT9 (confident match)
name: 40S ribosomal protein S5-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0049
name: RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
score:99.74 (hhsearch)
coverage over query:
66-123
 ID: PF00177
score: 99.14 (hhsearch)
coverage over query:
66-123
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 2zkq chain g
(very confident match)
coverage over query:
30-123
psy4243 104 ID: Q57CQ4 (portable match)
name: 30S ribosomal protein S7
def: One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA.
source: Brucella abortus biovar 1 (strain 9-941) (taxid: 262698)
 ID: COG0049
name: RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-96
 ID: PF00177
score: 99.97 (hhsearch)
coverage over query:
2-96
 ID: GO:0043229 (confident match)
name: intracellular organelle
 PDB ID: 1hus chain A
(very confident match)
coverage over query:
2-103
psy4242 74 ID: Q95Q11 (portable match)
name: 28S ribosomal protein S7, mitochondrial
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0049
name: RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
score:99.92 (hhsearch)
coverage over query:
1-74
 ID: PF00177
score: 99.82 (hhsearch)
coverage over query:
1-74
 no hit PDB ID: 3i1m chain G
(confident match)
coverage over query:
1-25,42-74
psy3124 463 ID: Q2YAZ9 (very confident match)
name: Elongation factor Tu
def: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.
source: Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) (taxid: 323848)
 ID: COG0050
name: TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
35-428
 ID: PF00009
score: 100.00 (hhsearch)
coverage over query:
43-236
 ID: GO:0003746 (very confident match)
name: translation elongation factor activity
 PDB ID: 2c78 chain A
(very confident match)
coverage over query:
37-429
psy8869 593 ID: A6T3K6 (very confident match)
name: Elongation factor Tu
def: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.
source: Janthinobacterium sp. (strain Marseille) (taxid: 375286)
 ID: COG0050
name: TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-391
 ID: PF00009
score: 99.97 (hhsearch)
coverage over query:
10-204
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2c78 chain A
(very confident match)
coverage over query:
4-393
psy15217 396 ID: A6T3K6 (very confident match)
name: Elongation factor Tu
def: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.
source: Janthinobacterium sp. (strain Marseille) (taxid: 375286)
 ID: COG0050
name: TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-396
 ID: PF00009
score: 100.00 (hhsearch)
coverage over query:
10-204
 ID: GO:0005829 (very confident match)
name: cytosol
 PDB ID: 2c78 chain A
(very confident match)
coverage over query:
4-396
psy9631 90 ID: Q8BFR5 (confident match)
name: Elongation factor Tu, mitochondrial
def: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.
source: Mus musculus (taxid: 10090)
 ID: COG0050
name: TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
score:99.97 (hhsearch)
coverage over query:
1-75
 ID: PF03143
score: 99.42 (hhsearch)
coverage over query:
2-72
 ID: GO:0003746 (confident match)
name: translation elongation factor activity
 PDB ID: 1d2e chain A
(very confident match)
coverage over query:
2-72
psy3566 105 ID: Q96GC5 (portable match)
name: 39S ribosomal protein L48, mitochondrial
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0051
name: RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
score:99.92 (hhsearch)
coverage over query:
36-105
 ID: PF00338
score: 99.92 (hhsearch)
coverage over query:
38-105
 no hit PDB ID: 3d3c chain J
(confident match)
coverage over query:
36-78,98-105
psy13427 268 ID: P82923 (confident match)
name: 28S ribosomal protein S2, mitochondrial
def:
source: Bos taurus (taxid: 9913)
 ID: COG0052
name: RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
67-253
 ID: PF00318
score: 100.00 (hhsearch)
coverage over query:
72-249
 ID: GO:0002119 (confident match)
name: nematode larval development
 PDB ID: 3bbn chain B
(very confident match)
coverage over query:
66-251
psy3759 844 ID: A6SZQ1 (confident match)
name: 30S ribosomal protein S2
def:
source: Janthinobacterium sp. (strain Marseille) (taxid: 375286)
 ID: COG0052
name: RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-226
 ID: PF00318
score: 100.00 (hhsearch)
coverage over query:
8-224
 ID: GO:0005618 (confident match)
name: cell wall
 no hit
psy13351 837 ID: A6SZQ1 (confident match)
name: 30S ribosomal protein S2
def:
source: Janthinobacterium sp. (strain Marseille) (taxid: 375286)
 ID: COG0052
name: RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-219
 ID: PF00318
score: 100.00 (hhsearch)
coverage over query:
1-217
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 1ybd chain A
(very confident match)
coverage over query:
415-648
psy3752 1012 ID: Q21WY9 (confident match)
name: 30S ribosomal protein S2
def:
source: Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) (taxid: 338969)
 ID: COG0052
name: RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
169-394
 ID: PF00318
score: 100.00 (hhsearch)
coverage over query:
176-392
 ID: GO:0005618 (confident match)
name: cell wall
 no hit
psy16263 112 ID: Q0PXX8 (confident match)
name: 40S ribosomal protein SA
def: Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
source: Diaphorina citri (taxid: 121845)
 ID: COG0052
name: RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
score:99.72 (hhsearch)
coverage over query:
13-100
 ID: PF00318
score: 99.48 (hhsearch)
coverage over query:
18-95
 ID: GO:0005875 (confident match)
name: microtubule associated complex
 PDB ID: 2zkq chain b
(very confident match)
coverage over query:
1-94
psy16262 222 ID: P14206 (very confident match)
name: 40S ribosomal protein SA
def: Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Also acts as a receptor for several other ligands, including the pathogenic prion protein, viruses, and bacteria. Enables malignant tumor cells to penetrate laminin tissue and vessel barriers. Activates precursor thymic anti-OFA/iLRP specific cytotoxic T-cell. May induce CD8 T-suppressor cells secreting IL-10. Acts as a PPP1R16B-dependent substrate of PPP1CA.
source: Mus musculus (taxid: 10090)
 ID: COG0052
name: RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
11-190
 ID: PF00318
score: 100.00 (hhsearch)
coverage over query:
18-186
 ID: GO:0043025 (very confident match)
name: neuronal cell body
 PDB ID: 2zkq chain b
(very confident match)
coverage over query:
1-200
psy9845 261 ID: Q803F6 (confident match)
name: 40S ribosomal protein SA
def: Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis.
source: Danio rerio (taxid: 7955)
 ID: COG0052
name: RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
score:99.95 (hhsearch)
coverage over query:
19-95
 ID: PF00318
score: 99.87 (hhsearch)
coverage over query:
20-92
 ID: GO:0045335 (confident match)
name: phagocytic vesicle
 PDB ID: 2zkq chain b
(very confident match)
coverage over query:
4-131
psy14658 306 ID: Q62941 (very confident match)
name: Zinc transporter 2
def: Involved in accumulation of zinc in endosomal/lysosomal vesicles.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
13-296
 ID: PF01545
score: 100.00 (hhsearch)
coverage over query:
23-293
 ID: GO:0005385 (confident match)
name: zinc ion transmembrane transporter activity
 PDB ID: 3h90 chain A
(very confident match)
coverage over query:
19-293
psy1891 158 ID: Q6PML9 (confident match)
name: Zinc transporter 9
def: Plays a role in the p160 coactivator signaling pathway that mediates transcriptional activation by nuclear receptors (By similarity). Plays a role in transcriptional activation of Wnt-responsive genes.
source: Homo sapiens (taxid: 9606)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:99.94 (hhsearch)
coverage over query:
4-158
 ID: PF01545
score: 99.84 (hhsearch)
coverage over query:
4-157
 ID: GO:0005856 (confident match)
name: cytoskeleton
 PDB ID: 3h90 chain A
(confident match)
coverage over query:
5-92,130-158
psy1590 365 ID: A7Z1S6 (confident match)
name: Cadmium, cobalt and zinc/H(+)-K(+) antiporter
def: Involved in divalent cation and potassium homeostasis in the cell. Catalyzes the active efflux of zinc, cadmium and cobalt, in exchange for potassium and H(+) ions.
source: Bacillus amyloliquefaciens (strain FZB42) (taxid: 326423)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
6-333
 ID: PF01545
score: 100.00 (hhsearch)
coverage over query:
9-330
 no hit PDB ID: 3h90 chain A
(very confident match)
coverage over query:
5-229,269-330
psy1893 78 ID: Q6PML9 (confident match)
name: Zinc transporter 9
def: Plays a role in the p160 coactivator signaling pathway that mediates transcriptional activation by nuclear receptors (By similarity). Plays a role in transcriptional activation of Wnt-responsive genes.
source: Homo sapiens (taxid: 9606)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:98.91 (hhsearch)
coverage over query:
8-76
 ID: PF01545
score: 98.15 (hhsearch)
coverage over query:
16-76
 no hit PDB ID: 3j1z chain P
(confident match)
coverage over query:
27-76
psy15324 363 ID: Q9SI03 (portable match)
name: Metal tolerance protein 12
def: Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
57-326
 ID: PF01545
score: 99.95 (hhsearch)
coverage over query:
57-324
 no hit PDB ID: 3h90 chain A
(very confident match)
coverage over query:
56-236,252-324
psy11811 369 ID: Q9Y6M5 (portable match)
name: Zinc transporter 1
def: May be involved in zinc transport out of the cell.
source: Homo sapiens (taxid: 9606)
 ID: COG0053
name: MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
score:99.96 (hhsearch)
coverage over query:
32-245
 ID: PF01545
score: 99.67 (hhsearch)
coverage over query:
34-245
 no hit PDB ID: 3j1z chain P
(confident match)
coverage over query:
118-175,207-356
psy6460 198 ID: Q01859 (confident match)
name: ATP synthase subunit beta, mitochondrial
def: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0055
name: AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
5-197
 ID: PF00006
score: 99.92 (hhsearch)
coverage over query:
4-77
 ID: GO:0005811 (very confident match)
name: lipid particle
 PDB ID: 2ck3 chain D
(very confident match)
coverage over query:
5-196
psy17544 266 ID: Q01859 (confident match)
name: ATP synthase subunit beta, mitochondrial
def: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0055
name: AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
52-265
 ID: PF00006
score: 99.86 (hhsearch)
coverage over query:
178-265
 ID: GO:0005929 (confident match)
name: cilium
 PDB ID: 2ck3 chain D
(very confident match)
coverage over query:
50-265
psy2894 515 ID: A1WF56 (very confident match)
name: ATP synthase subunit alpha
def: Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
source: Verminephrobacter eiseniae (strain EF01-2) (taxid: 391735)
 ID: COG0056
name: AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
1-513
 ID: PF00006
score: 100.00 (hhsearch)
coverage over query:
148-375
 ID: GO:0005618 (very confident match)
name: cell wall
 PDB ID: 3oaa chain A
(very confident match)
coverage over query:
1-511
psy5595 293 ID: P31409 (very confident match)
name: V-type proton ATPase subunit B
def: Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0056
name: AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
3-285
 ID: PF00006
score: 100.00 (hhsearch)
coverage over query:
47-262
 ID: GO:0005794 (very confident match)
name: Golgi apparatus
 PDB ID: 3gqb chain B
(very confident match)
coverage over query:
38-237
psy210 915 ID: A4Y187 (confident match)
name: ATP synthase subunit beta
def: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
source: Pseudomonas mendocina (strain ymp) (taxid: 399739)
 ID: COG0056
name: AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
113-588
 ID: PF00006
score: 100.00 (hhsearch)
coverage over query:
668-881
 ID: GO:0006933 (confident match)
name: negative regulation of cell adhesion involved in substrate-bound cell migration
 PDB ID: 1fx0 chain B
(very confident match)
coverage over query:
577-914
psy2893 515 ID: A1WF56 (very confident match)
name: ATP synthase subunit alpha
def: Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
source: Verminephrobacter eiseniae (strain EF01-2) (taxid: 391735)
 ID: COG0056
name: AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
1-513
 ID: PF00006
score: 100.00 (hhsearch)
coverage over query:
148-375
 ID: GO:0040007 (very confident match)
name: growth
 PDB ID: 3oaa chain A
(very confident match)
coverage over query:
1-511
psy13776 539 ID: P25705 (confident match)
name: ATP synthase subunit alpha, mitochondrial
def: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.
source: Homo sapiens (taxid: 9606)
 ID: COG0056
name: AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
39-536
 ID: PF00006
score: 100.00 (hhsearch)
coverage over query:
192-443
 ID: GO:0046034 (confident match)
name: ATP metabolic process
 PDB ID: 1fx0 chain A
(very confident match)
coverage over query:
40-233,281-443,495-537
psy10055 124 ID: A5ILX0 (portable match)
name: ATP synthase subunit alpha
def: Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
source: Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) (taxid: 390874)
 ID: COG0056
name: AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
score:99.36 (hhsearch)
coverage over query:
71-124
 ID: PF00008
score: 98.62 (hhsearch)
coverage over query:
30-61
 no hit PDB ID: 1fx0 chain A
(confident match)
coverage over query:
73-124
psy13775 119 ID: P25705 (confident match)
name: ATP synthase subunit alpha, mitochondrial
def: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.
source: Homo sapiens (taxid: 9606)
 ID: COG0056
name: AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
score:99.95 (hhsearch)
coverage over query:
13-119
 ID: PF00306
score: 99.22 (hhsearch)
coverage over query:
13-80
 ID: GO:0016887 (confident match)
name: ATPase activity
 PDB ID: 2ck3 chain A
(very confident match)
coverage over query:
33-118
psy13777 121 ID: P25705 (confident match)
name: ATP synthase subunit alpha, mitochondrial
def: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits. Subunit alpha does not bear the catalytic high-affinity ATP-binding sites.
source: Homo sapiens (taxid: 9606)
 ID: COG0056
name: AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
1-121
 ID: PF00306
score: 99.85 (hhsearch)
coverage over query:
1-82
 ID: GO:0042288 (confident match)
name: MHC class I protein binding
 PDB ID: 2ck3 chain A
(very confident match)
coverage over query:
1-120
psy6888 69 ID: P07487 (confident match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:99.67 (hhsearch)
coverage over query:
7-67
 ID: PF00044
score: 99.86 (hhsearch)
coverage over query:
7-68
 ID: GO:0004365 (very confident match)
name: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
 PDB ID: 3e5r chain O
(very confident match)
coverage over query:
7-65
psy6887 70 ID: P07487 (confident match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:99.07 (hhsearch)
coverage over query:
23-69
 ID: PF00044
score: 99.38 (hhsearch)
coverage over query:
21-69
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2b4r chain O
(very confident match)
coverage over query:
22-69
psy6886 146 ID: P07487 (very confident match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-146
 ID: PF02800
score: 100.00 (hhsearch)
coverage over query:
55-146
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1u8f chain O
(very confident match)
coverage over query:
1-146
psy6885 301 ID: P07487 (very confident match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
11-299
 ID: PF02800
score: 100.00 (hhsearch)
coverage over query:
123-280
 ID: GO:0005829 (very confident match)
name: cytosol
 PDB ID: 3cps chain A
(very confident match)
coverage over query:
11-300
psy8544 364 ID: P07487 (very confident match)
name: Glyceraldehyde-3-phosphate dehydrogenase 2
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0057
name: GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-332
 ID: PF02800
score: 100.00 (hhsearch)
coverage over query:
155-312
 ID: GO:0005829 (very confident match)
name: cytosol
 PDB ID: 1u8f chain O
(very confident match)
coverage over query:
1-332
psy17283 635 ID: Q0VCM4 (portable match)
name: Glycogen phosphorylase, liver form
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Bos taurus (taxid: 9913)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-368
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
2-373
 ID: GO:0005737 (confident match)
name: cytoplasm
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
2-376
psy17286 300 ID: P79334 (confident match)
name: Glycogen phosphorylase, muscle form
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Bos taurus (taxid: 9913)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
83-300
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
175-300
 ID: GO:0008144 (confident match)
name: drug binding
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
72-300
psy17284 286 ID: P79334 (confident match)
name: Glycogen phosphorylase, muscle form
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Bos taurus (taxid: 9913)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
59-285
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
75-285
 ID: GO:0043234 (confident match)
name: protein complex
 PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
74-285
psy7597 188 ID: Q9XTL9 (portable match)
name: Glycogen phosphorylase
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-174
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
13-180
 no hit PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
1-180
psy2772 746 ID: Q9Z8N1 (portable match)
name: Glycogen phosphorylase
def: Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
source: Chlamydia pneumoniae (taxid: 83558)
 ID: COG0058
name: GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
225-403
 ID: PF00343
score: 100.00 (hhsearch)
coverage over query:
227-402
 no hit PDB ID: 2gj4 chain A
(very confident match)
coverage over query:
228-401
psy17125 1281 ID: B7HLM9 (portable match)
name: Isoleucine--tRNA ligase
def: Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).
source: Bacillus cereus (strain AH187) (taxid: 405534)
 ID: COG0060
name: IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
6-1038
 ID: PF00133
score: 100.00 (hhsearch)
coverage over query:
5-883
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 1wz2 chain A
(very confident match)
coverage over query:
19-247,505-830,860-1037
psy15223 2492 ID: A1K4R7 (confident match)
name: Isoleucine--tRNA ligase
def: Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).
source: Azoarcus sp. (strain BH72) (taxid: 62928)
 ID: COG0060
name: IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
438-1339
 ID: PF00133
score: 100.00 (hhsearch)
coverage over query:
437-1057
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2b3j chain A
(very confident match)
coverage over query:
57-201
psy1869 205 ID: O13651 (confident match)
name: Isoleucine--tRNA ligase, cytoplasmic
def:
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0060
name: IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
3-205
 ID: PF00133
score: 100.00 (hhsearch)
coverage over query:
17-205
 ID: GO:0006428 (confident match)
name: isoleucyl-tRNA aminoacylation
 PDB ID: 1wz2 chain A
(very confident match)
coverage over query:
8-195
psy944 689 ID: A4G1V2 (portable match)
name: Valine--tRNA ligase
def: Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner.
source: Herminiimonas arsenicoxydans (taxid: 204773)
 ID: COG0060
name: IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
205-670
 ID: PF00133
score: 100.00 (hhsearch)
coverage over query:
214-672
 ID: GO:0009987 (confident match)
name: cellular process
 PDB ID: 1wka chain A
(very confident match)
coverage over query:
419-452,521-624
psy5309 1618 ID: Q10490 (portable match)
name: Putative leucine--tRNA ligase, cytoplasmic
def:
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0060
name: IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
4-1575
 ID: PF00133
score: 100.00 (hhsearch)
coverage over query:
18-1088
 no hit PDB ID: 1wz2 chain A
(very confident match)
coverage over query:
11-35,84-157,197-371
,408-449,502-506
,527-530,545-577
,590-609,640-751
,763-770,794-968
,1026-1026,1232-1304
,1335-1409,1465-1564
,1579-1605
psy961 118 ID: P26640 (confident match)
name: Valine--tRNA ligase
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0060
name: IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:99.88 (hhsearch)
coverage over query:
14-117
 ID: PF08264
score: 99.67 (hhsearch)
coverage over query:
47-117
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1gax chain A
(very confident match)
coverage over query:
15-117
psy5950 511 ID: O95544 (confident match)
name: NAD kinase
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0061
name: nadF NAD kinase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
172-478
 ID: PF01513
score: 100.00 (hhsearch)
coverage over query:
173-459
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3pfn chain A
(very confident match)
coverage over query:
135-477
psy1578 440 ID: Q96RQ1 (portable match)
name: Endoplasmic reticulum-Golgi intermediate compartment protein 2
def: Possible role in transport between endoplasmic reticulum and Golgi.
source: Homo sapiens (taxid: 9606)
 ID: COG0061
name: nadF NAD kinase [Coenzyme metabolism]
score:99.65 (hhsearch)
coverage over query:
4-125
 ID: PF07970
score: 99.89 (hhsearch)
coverage over query:
330-437
 no hit PDB ID: 3pfn chain A
(confident match)
coverage over query:
4-125
psy16096 154 ID: Q9W2Y3 (confident match)
name: NAD(P)H-hydrate epimerase
def: Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0062
name: Uncharacterized conserved protein [Function unknown]
score:100.00 (hhsearch)
coverage over query:
2-126
 ID: PF03853
score: 99.97 (hhsearch)
coverage over query:
2-112
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2o8n chain A
(very confident match)
coverage over query:
2-153
psy9483 186 ID: O94347 (portable match)
name: ATP-dependent (S)-NAD(P)H-hydrate dehydratase
def: Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ATP, which is converted to ADP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0063
name: Predicted sugar kinase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-185
 ID: PF01256
score: 100.00 (hhsearch)
coverage over query:
2-185
 no hit PDB ID: 3bgk chain A
(very confident match)
coverage over query:
3-185
psy3805 139 ID: Q98ND3 (confident match)
name: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
def: Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).
source: Rhizobium loti (strain MAFF303099) (taxid: 266835)
 ID: COG0064
name: GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-136
 ID: PF02934
score: 100.00 (hhsearch)
coverage over query:
1-135
 ID: GO:0050567 (confident match)
name: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
 PDB ID: 3kfu chain F
(very confident match)
coverage over query:
1-136
psy12797 66 ID: Q9C102 (confident match)
name: Putative glutamate synthase [NADPH]
def:
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0067
name: GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
score:99.82 (hhsearch)
coverage over query:
1-66
 ID: PF00310
score: 99.85 (hhsearch)
coverage over query:
1-66
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1ea0 chain A
(very confident match)
coverage over query:
1-65
psy12804 182 ID: Q0JKD0 (portable match)
name: Glutamate synthase 1 [NADH], chloroplastic
def: Involved in glutamate biosynthesis and plays a major role in the primary ammonium ions assimilation in seedling roots. May be involved in the reutilization of glutamine in developing organs. Plays a role in the development of tillers.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0067
name: GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
31-175
 ID: PF00310
score: 100.00 (hhsearch)
coverage over query:
60-175
 ID: GO:0009536 (confident match)
name: plastid
 PDB ID: 1ea0 chain A
(very confident match)
coverage over query:
60-175
psy12805 1429 ID: Q0JKD0 (confident match)
name: Glutamate synthase 1 [NADH], chloroplastic
def: Involved in glutamate biosynthesis and plays a major role in the primary ammonium ions assimilation in seedling roots. May be involved in the reutilization of glutamine in developing organs. Plays a role in the development of tillers.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0069
name: GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
222-700
 ID: PF01645
score: 100.00 (hhsearch)
coverage over query:
318-686
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1ea0 chain A
(very confident match)
coverage over query:
10-820,846-1020
psy12798 170 ID: Q0JKD0 (confident match)
name: Glutamate synthase 1 [NADH], chloroplastic
def: Involved in glutamate biosynthesis and plays a major role in the primary ammonium ions assimilation in seedling roots. May be involved in the reutilization of glutamine in developing organs. Plays a role in the development of tillers.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0069
name: GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-169
 ID: PF01645
score: 100.00 (hhsearch)
coverage over query:
1-169
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1ea0 chain A
(very confident match)
coverage over query:
1-61,96-168
psy10999 447 ID: Q0JKD0 (confident match)
name: Glutamate synthase 1 [NADH], chloroplastic
def: Involved in glutamate biosynthesis and plays a major role in the primary ammonium ions assimilation in seedling roots. May be involved in the reutilization of glutamine in developing organs. Plays a role in the development of tillers.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0069
name: GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-421
 ID: PF01645
score: 100.00 (hhsearch)
coverage over query:
16-410
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1ea0 chain A
(very confident match)
coverage over query:
1-136,162-439
psy14967 168 ID: P82147 (confident match)
name: Protein lethal(2)essential for life
def: Vital role in embryonic development.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.93 (hhsearch)
coverage over query:
65-162
 ID: PF00011
score: 99.91 (hhsearch)
coverage over query:
69-163
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 2wj5 chain A
(very confident match)
coverage over query:
67-164
psy16256 74 ID: P41316 (portable match)
name: Alpha-crystallin B chain
def: May contribute to the transparency and refractive index of the lens.
source: Oryctolagus cuniculus (taxid: 9986)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.74 (hhsearch)
coverage over query:
2-73
 ID: PF00011
score: 99.77 (hhsearch)
coverage over query:
1-73
 ID: GO:0030018 (confident match)
name: Z disc
 PDB ID: 2klr chain A
(very confident match)
coverage over query:
2-74
psy6564 150 ID: P41316 (confident match)
name: Alpha-crystallin B chain
def: May contribute to the transparency and refractive index of the lens.
source: Oryctolagus cuniculus (taxid: 9986)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.88 (hhsearch)
coverage over query:
2-99
 ID: PF00011
score: 99.90 (hhsearch)
coverage over query:
3-100
 ID: GO:0032387 (confident match)
name: negative regulation of intracellular transport
 PDB ID: 2wj5 chain A
(very confident match)
coverage over query:
1-89
psy8216 189 ID: P82147 (confident match)
name: Protein lethal(2)essential for life
def: Vital role in embryonic development.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.89 (hhsearch)
coverage over query:
63-164
 ID: PF00011
score: 99.90 (hhsearch)
coverage over query:
67-164
 ID: GO:0032387 (confident match)
name: negative regulation of intracellular transport
 PDB ID: 2klr chain A
(very confident match)
coverage over query:
5-171
psy4756 125 ID: P82147 (confident match)
name: Protein lethal(2)essential for life
def: Vital role in embryonic development.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.82 (hhsearch)
coverage over query:
2-94
 ID: PF00011
score: 99.84 (hhsearch)
coverage over query:
3-94
 ID: GO:0048523 (confident match)
name: negative regulation of cellular process
 PDB ID: 3q9p chain A
(very confident match)
coverage over query:
3-80
psy4755 147 ID: Q7M2W6 (confident match)
name: Alpha-crystallin B chain
def: May contribute to the transparency and refractive index of the lens.
source: Sus scrofa (taxid: 9823)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.88 (hhsearch)
coverage over query:
16-114
 ID: PF00011
score: 99.87 (hhsearch)
coverage over query:
17-114
 ID: GO:0048523 (confident match)
name: negative regulation of cellular process
 PDB ID: 2y1y chain A
(very confident match)
coverage over query:
18-103
psy16273 227 ID: P41316 (portable match)
name: Alpha-crystallin B chain
def: May contribute to the transparency and refractive index of the lens.
source: Oryctolagus cuniculus (taxid: 9986)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.90 (hhsearch)
coverage over query:
96-226
 ID: PF00011
score: 99.83 (hhsearch)
coverage over query:
138-226
 no hit PDB ID: 2klr chain A
(very confident match)
coverage over query:
70-227
psy16269 186 no hit ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.23 (hhsearch)
coverage over query:
34-123
 ID: PF00011
score: 99.43 (hhsearch)
coverage over query:
42-122
 no hit PDB ID: 2bol chain A
(very confident match)
coverage over query:
47-182
psy5045 407 ID: Q7TMX5 (confident match)
name: Protein SHQ1 homolog
def: Required for the quantitative accumulation of H/ACA ribonucleoproteins (RNPs), including telomerase, probably through the stabilization of DKC1, from the time of its synthesis until its association with NOP10, NHP2, and NAF1 at the nascent H/ACA RNA.
source: Mus musculus (taxid: 10090)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:97.34 (hhsearch)
coverage over query:
2-82
 ID: PF04925
score: 100.00 (hhsearch)
coverage over query:
239-350
 no hit PDB ID: 2k8q chain A
(very confident match)
coverage over query:
1-115
psy11204 161 ID: Q9CQ48 (confident match)
name: NudC domain-containing protein 2
def:
source: Mus musculus (taxid: 10090)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:97.54 (hhsearch)
coverage over query:
16-97
 ID: PF04969
score: 99.74 (hhsearch)
coverage over query:
19-94
 ID: GO:0005856 (confident match)
name: cytoskeleton
 PDB ID: 2rh0 chain A
(very confident match)
coverage over query:
6-157
psy7694 317 ID: B3DH20 (portable match)
name: Protein TILB homolog
def: Plays a crucial role in regulating cilia motility in pronephric tubules, cloaca and neural tube. Required for establishing left-right asymmetry of the body plan; controls cell fate and convergent extension (CE) movements during gastrulation, respectively, via the Wnt and the planar cell polarity (PCP) signaling pathways. Required for the proper development of renal glomeruli and tubules.
source: Danio rerio (taxid: 7955)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:96.00 (hhsearch)
coverage over query:
86-180
 ID: PF04969
score: 98.06 (hhsearch)
coverage over query:
103-176
 no hit PDB ID: 1wh0 chain A
(portable match)
coverage over query:
97-179
psy16432 69 ID: Q63525 (portable match)
name: Nuclear migration protein nudC
def: Plays a role in neurogenesis and neuronal migration. Necessary for correct formation of mitotic spindles and chromosome separation during mitosis.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:93.85 (hhsearch)
coverage over query:
7-66
 ID: PF04969
score: 99.42 (hhsearch)
coverage over query:
3-63
 no hit PDB ID: 3qor chain A
(very confident match)
coverage over query:
3-66
psy10589 66 ID: Q7TMX5 (portable match)
name: Protein SHQ1 homolog
def: Required for the quantitative accumulation of H/ACA ribonucleoproteins (RNPs), including telomerase, probably through the stabilization of DKC1, from the time of its synthesis until its association with NOP10, NHP2, and NAF1 at the nascent H/ACA RNA.
source: Mus musculus (taxid: 10090)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:91.93 (hhsearch)
coverage over query:
19-60
 ID: PF04969
score: 97.35 (hhsearch)
coverage over query:
22-61
 no hit PDB ID: 2k8q chain A
(very confident match)
coverage over query:
19-66
psy5819 296 ID: Q8R368 (confident match)
name: Dyslexia susceptibility 1 candidate gene 1 protein homolog
def: Involved in neuronal migration during development of the cerebral neocortex. May regulate the stability and proteasomal degradation of the estrogen receptors that play an important role in neuronal differentiation, survival and plasticity.
source: Mus musculus (taxid: 10090)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:97.97 (hhsearch)
coverage over query:
5-81
 ID: PF04969
score: 99.63 (hhsearch)
coverage over query:
6-77
 no hit PDB ID: 2o30 chain A
(confident match)
coverage over query:
1-115
psy14539 218 ID: Q9NQM4 (confident match)
name: Protein PIH1D3
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.12 (hhsearch)
coverage over query:
145-211
 ID: PF08190
score: 99.86 (hhsearch)
coverage over query:
109-209
 no hit PDB ID: 3aab chain A
(confident match)
coverage over query:
144-212
psy2549 218 ID: Q9NQM4 (portable match)
name: Protein PIH1D3
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0071
name: IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
score:99.18 (hhsearch)
coverage over query:
145-211
 ID: PF08190
score: 99.86 (hhsearch)
coverage over query:
110-209
 no hit PDB ID: 3aab chain A
(confident match)
coverage over query:
145-212
psy15928 485 ID: Q9WUA2 (confident match)
name: Phenylalanine--tRNA ligase beta subunit
def:
source: Mus musculus (taxid: 10090)
 ID: COG0072
name: PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-284
 ID: PF01409
score: 99.94 (hhsearch)
coverage over query:
1-244
 no hit PDB ID: 3l4g chain B
(very confident match)
coverage over query:
2-115,159-241
psy9573 809 ID: Q8ZDX1 (confident match)
name: Phenylalanine--tRNA ligase beta subunit
def:
source: Yersinia pestis (taxid: 632)
 ID: COG0072
name: PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
147-808
 ID: PF03483
score: 100.00 (hhsearch)
coverage over query:
216-389
 ID: GO:0016020 (confident match)
name: membrane
 PDB ID: 2rhq chain B
(very confident match)
coverage over query:
1-807
psy14335 273 ID: Q19713 (confident match)
name: Phenylalanine--tRNA ligase beta subunit
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0072
name: PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
score:99.28 (hhsearch)
coverage over query:
7-185
 ID: PF03483
score: 98.54 (hhsearch)
coverage over query:
100-171
 no hit PDB ID: 3l4g chain B
(very confident match)
coverage over query:
9-199
psy18006 180 ID: Q19713 (confident match)
name: Phenylalanine--tRNA ligase beta subunit
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0072
name: PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-173
 ID: PF03484
score: 99.60 (hhsearch)
coverage over query:
2-41
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3l4g chain B
(very confident match)
coverage over query:
2-165
psy15305 153 ID: P31230 (confident match)
name: Aminoacyl tRNA synthase complex-interacting multifunctional protein 1
def: Non-catalytic component of the multisynthase complex. Stimulates the catalytic activity of cytoplasmic arginyl-tRNA synthase. Binds tRNA. Possesses inflammatory cytokine activity. Negatively regulates TGF-beta signaling through stabilization of SMURF2 by binding to SMURF2 and inhibiting its SMAD7-mediated degradation. Involved in glucose homeostasis through induction of glucagon secretion at low glucose levels. Promotes dermal fibroblast proliferation and wound repair. Regulates KDELR1-mediated retention of HSP90B1/gp96 in the endoplasmic reticulum. Plays a role in angiogenesis by inducing endothelial cell migration at low concentrations and endothelian cell apoptosis at high concentrations. Induces maturation of dendritic cells and monocyte cell adhesion. Modulates endothelial cell responses by degrading HIF-1A through interaction with PSMA7.
source: Mus musculus (taxid: 10090)
 ID: COG0073
name: ARC1 EMAP domain [General function prediction only]
score:99.93 (hhsearch)
coverage over query:
37-136
 ID: PF01588
score: 99.92 (hhsearch)
coverage over query:
49-134
 ID: GO:0000049 (confident match)
name: tRNA binding
 PDB ID: 1fl0 chain A
(very confident match)
coverage over query:
43-145
psy15304 96 ID: P31230 (confident match)
name: Aminoacyl tRNA synthase complex-interacting multifunctional protein 1
def: Non-catalytic component of the multisynthase complex. Stimulates the catalytic activity of cytoplasmic arginyl-tRNA synthase. Binds tRNA. Possesses inflammatory cytokine activity. Negatively regulates TGF-beta signaling through stabilization of SMURF2 by binding to SMURF2 and inhibiting its SMAD7-mediated degradation. Involved in glucose homeostasis through induction of glucagon secretion at low glucose levels. Promotes dermal fibroblast proliferation and wound repair. Regulates KDELR1-mediated retention of HSP90B1/gp96 in the endoplasmic reticulum. Plays a role in angiogenesis by inducing endothelial cell migration at low concentrations and endothelian cell apoptosis at high concentrations. Induces maturation of dendritic cells and monocyte cell adhesion. Modulates endothelial cell responses by degrading HIF-1A through interaction with PSMA7.
source: Mus musculus (taxid: 10090)
 ID: COG0073
name: ARC1 EMAP domain [General function prediction only]
score:97.92 (hhsearch)
coverage over query:
1-34
 ID: PF01588
score: 98.43 (hhsearch)
coverage over query:
1-33
 ID: GO:0000049 (confident match)
name: tRNA binding
 PDB ID: 1fl0 chain A
(very confident match)
coverage over query:
1-96
psy2025 213 ID: Q44951 (portable match)
name: Methionine--tRNA ligase
def: Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
source: Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) (taxid: 224326)
 ID: COG0073
name: ARC1 EMAP domain [General function prediction only]
score:99.88 (hhsearch)
coverage over query:
23-126
 ID: PF01588
score: 99.91 (hhsearch)
coverage over query:
27-125
 ID: GO:0005737 (confident match)
name: cytoplasm
 PDB ID: 1ntg chain A
(very confident match)
coverage over query:
26-190
psy15301 947 no hit ID: COG0073
name: ARC1 EMAP domain [General function prediction only]
score:93.11 (hhsearch)
coverage over query:
142-195
 ID: PF01588
score: 96.23 (hhsearch)
coverage over query:
142-200
 no hit PDB ID: 1fl0 chain A
(very confident match)
coverage over query:
143-269
psy8894 306 ID: Q94522 (very confident match)
name: Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
def: Catalyzes the ATP- or GTP-dependent ligation of succinate and CoA to form succinyl-CoA. The nature of the beta subunit determines the nucleotide specificity.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0074
name: SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
23-303
 ID: PF13607
score: 100.00 (hhsearch)
coverage over query:
168-298
 ID: GO:0006104 (very confident match)
name: succinyl-CoA metabolic process
 PDB ID: 2nu8 chain A
(very confident match)
coverage over query:
25-300
psy10208 143 ID: Q9V7Y2 (confident match)
name: Sphingosine-1-phosphate lyase
def: Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Sphingolipid catabolism is required for normal development including viability, reproduction and muscle development.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:99.29 (hhsearch)
coverage over query:
1-89
 ID: PF00266
score: 96.80 (hhsearch)
coverage over query:
2-87
 no hit PDB ID: 3mc6 chain A
(very confident match)
coverage over query:
1-142
psy8011 102 ID: A6QM00 (confident match)
name: Glutamate decarboxylase-like protein 1
def:
source: Bos taurus (taxid: 9913)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:99.54 (hhsearch)
coverage over query:
22-101
 ID: PF00282
score: 99.91 (hhsearch)
coverage over query:
13-101
 ID: GO:0004351 (confident match)
name: glutamate decarboxylase activity
 PDB ID: 2jis chain A
(very confident match)
coverage over query:
26-102
psy12303 480 ID: P20228 (very confident match)
name: Glutamate decarboxylase
def: Catalyzes the production of GABA.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
14-474
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
35-404
 ID: GO:0004351 (very confident match)
name: glutamate decarboxylase activity
 PDB ID: 2jis chain A
(very confident match)
coverage over query:
3-480
psy14299 448 ID: Q5IS68 (confident match)
name: Glutamate decarboxylase 1
def: Catalyzes the production of GABA.
source: Pan troglodytes (taxid: 9598)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-436
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
3-356
 ID: GO:0004351 (confident match)
name: glutamate decarboxylase activity
 PDB ID: 2jis chain A
(very confident match)
coverage over query:
3-237,319-435
psy14030 63 ID: Q5IS68 (confident match)
name: Glutamate decarboxylase 1
def: Catalyzes the production of GABA.
source: Pan troglodytes (taxid: 9598)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:99.84 (hhsearch)
coverage over query:
1-62
 ID: PF00282
score: 99.88 (hhsearch)
coverage over query:
1-62
 ID: GO:0004351 (confident match)
name: glutamate decarboxylase activity
 PDB ID: 2okj chain A
(very confident match)
coverage over query:
2-62
psy1785 629 ID: Q9Y600 (confident match)
name: Cysteine sulfinic acid decarboxylase
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
188-624
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
180-553
 ID: GO:0004351 (confident match)
name: glutamate decarboxylase activity
 PDB ID: 2jis chain A
(very confident match)
coverage over query:
78-133,189-629
psy3048 367 ID: P14173 (confident match)
name: Aromatic-L-amino-acid decarboxylase
def: Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-310
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
1-291
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1js3 chain A
(very confident match)
coverage over query:
2-195,224-355
psy13453 764 ID: P18486 (confident match)
name: Alpha-methyldopa hypersensitive protein
def: Participates in catecholamine metabolism. It plays a vital role in cuticle development.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
466-764
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
484-764
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1js3 chain A
(very confident match)
coverage over query:
450-764
psy9815 119 ID: P23738 (confident match)
name: Histidine decarboxylase
def:
source: Mus musculus (taxid: 10090)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:98.89 (hhsearch)
coverage over query:
14-81
 ID: PF00282
score: 99.59 (hhsearch)
coverage over query:
11-82
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 4e1o chain A
(very confident match)
coverage over query:
3-80
psy1678 297 ID: P05031 (confident match)
name: Aromatic-L-amino-acid decarboxylase
def: Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Variation in the synthesis of bioamines may be a factor contributing to natural variation in life span.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:99.97 (hhsearch)
coverage over query:
76-291
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
93-297
 ID: GO:0043025 (confident match)
name: neuronal cell body
 PDB ID: 3k40 chain A
(very confident match)
coverage over query:
17-52,95-297
psy9810 154 ID: P14173 (confident match)
name: Aromatic-L-amino-acid decarboxylase
def: Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:99.41 (hhsearch)
coverage over query:
2-69
 ID: PF00282
score: 99.77 (hhsearch)
coverage over query:
1-67
 ID: GO:0043025 (confident match)
name: neuronal cell body
 PDB ID: 1js3 chain A
(very confident match)
coverage over query:
2-68
psy9807 561 ID: P14173 (confident match)
name: Aromatic-L-amino-acid decarboxylase
def: Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
33-553
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
51-426
 ID: GO:0043025 (confident match)
name: neuronal cell body
 PDB ID: 3k40 chain A
(very confident match)
coverage over query:
17-426,494-556
psy1596 375 ID: Q05733 (confident match)
name: Histidine decarboxylase
def: Required in photoreceptor transmitter synthesis.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
5-375
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
2-375
 ID: GO:0043025 (confident match)
name: neuronal cell body
 PDB ID: 1js3 chain A
(very confident match)
coverage over query:
3-78,103-109,164-375
psy3051 111 ID: P18486 (confident match)
name: Alpha-methyldopa hypersensitive protein
def: Participates in catecholamine metabolism. It plays a vital role in cuticle development.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:98.75 (hhsearch)
coverage over query:
17-111
 ID: PF00282
score: 99.70 (hhsearch)
coverage over query:
35-110
 ID: GO:0050896 (confident match)
name: response to stimulus
 PDB ID: 1js3 chain A
(very confident match)
coverage over query:
1-110
psy10210 435 ID: Q9V7Y2 (confident match)
name: Sphingosine-1-phosphate lyase
def: Cleaves phosphorylated sphingoid bases (PSBs), such as sphingosine-1-phosphate, into fatty aldehydes and phosphoethanolamine. Sphingolipid catabolism is required for normal development including viability, reproduction and muscle development.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
102-429
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
103-428
 ID: GO:0050896 (confident match)
name: response to stimulus
 PDB ID: 3mc6 chain A
(very confident match)
coverage over query:
71-432
psy11047 943 ID: P20711 (portable match)
name: Aromatic-L-amino-acid decarboxylase
def: Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.
source: Homo sapiens (taxid: 9606)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
134-695
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
153-636
 ID: GO:1901605 (confident match)
name: alpha-amino acid metabolic process
 PDB ID: 1js3 chain A
(very confident match)
coverage over query:
119-378,399-426,462-551
,603-698
psy852 891 ID: P14173 (portable match)
name: Aromatic-L-amino-acid decarboxylase
def: Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
7-482
 ID: PF00282
score: 100.00 (hhsearch)
coverage over query:
3-469
 no hit PDB ID: 1js3 chain A
(very confident match)
coverage over query:
4-84,106-241,349-405
,552-552,607-607
,626-760
psy866 132 ID: P14173 (portable match)
name: Aromatic-L-amino-acid decarboxylase
def: Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:99.48 (hhsearch)
coverage over query:
6-115
 ID: PF00282
score: 99.85 (hhsearch)
coverage over query:
9-116
 no hit PDB ID: 1js3 chain A
(very confident match)
coverage over query:
9-113
psy2484 98 ID: Q6P474 (portable match)
name: Putative pyridoxal-dependent decarboxylase domain-containing protein 2
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:99.89 (hhsearch)
coverage over query:
1-90
 ID: PF00282
score: 99.93 (hhsearch)
coverage over query:
2-79
 no hit PDB ID: 3vp6 chain A
(confident match)
coverage over query:
2-78
psy13413 276 ID: Q6P996 (portable match)
name: Pyridoxal-dependent decarboxylase domain-containing protein 1
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:96.79 (hhsearch)
coverage over query:
67-183
 ID: PF00282
score: 91.87 (hhsearch)
coverage over query:
67-109
 no hit PDB ID: 2okj chain A
(confident match)
coverage over query:
71-181
psy2480 337 ID: Q6P996 (portable match)
name: Pyridoxal-dependent decarboxylase domain-containing protein 1
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0076
name: GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
score:98.71 (hhsearch)
coverage over query:
173-324
 ID: PF00282
score: 98.90 (hhsearch)
coverage over query:
136-252
 no hit PDB ID: 2qma chain A
(confident match)
coverage over query:
166-217,241-324
psy4411 99 ID: A0KQG0 (portable match)
name: Aspartate carbamoyltransferase
def:
source: Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) (taxid: 380703)
 ID: COG0078
name: ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
score:99.97 (hhsearch)
coverage over query:
1-98
 ID: PF00185
score: 99.46 (hhsearch)
coverage over query:
39-98
 ID: GO:0006541 (confident match)
name: glutamine metabolic process
 PDB ID: 1ml4 chain A
(very confident match)
coverage over query:
1-98
psy39 195 ID: Q9Y3B7 (very confident match)
name: 39S ribosomal protein L11, mitochondrial
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0080
name: RplK Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
20-157
 ID: PF00298
score: 99.95 (hhsearch)
coverage over query:
85-155
 ID: GO:0005762 (confident match)
name: mitochondrial large ribosomal subunit
 PDB ID: 3egv chain B
(very confident match)
coverage over query:
18-157
psy15220 289 ID: A4JAM8 (confident match)
name: 50S ribosomal protein L11
def: This protein binds directly to 23S ribosomal RNA.
source: Burkholderia vietnamiensis (strain G4 / LMG 22486) (taxid: 269482)
 ID: COG0080
name: RplK Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-143
 ID: PF00298
score: 99.94 (hhsearch)
coverage over query:
72-140
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3egv chain B
(very confident match)
coverage over query:
3-146
psy13547 165 ID: P35979 (very confident match)
name: 60S ribosomal protein L12
def: Binds directly to 26S ribosomal RNA.
source: Mus musculus (taxid: 10090)
 ID: COG0080
name: RplK Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
9-146
 ID: PF03946
score: 99.94 (hhsearch)
coverage over query:
12-69
 ID: GO:0005811 (very confident match)
name: lipid particle
 no hit
psy16349 351 ID: Q9BYD6 (portable match)
name: 39S ribosomal protein L1, mitochondrial
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0081
name: RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
91-321
 ID: PF00687
score: 99.97 (hhsearch)
coverage over query:
118-314
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2ftc chain A
(very confident match)
coverage over query:
124-325
psy8483 161 ID: P53027 (very confident match)
name: 60S ribosomal protein L10a (Fragment)
def:
source: Sus scrofa (taxid: 9823)
 ID: COG0081
name: RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
5-161
 ID: PF00687
score: 99.96 (hhsearch)
coverage over query:
23-160
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3iz5 chain A
(very confident match)
coverage over query:
2-161
psy4674 173 ID: Q91YE3 (portable match)
name: Egl nine homolog 1
def: Cellular oxygen sensor that catalyzes, under normoxic conditions, the post-translational formation of 4-hydroxyproline in hypoxia-inducible factor (HIF) alpha proteins. Hydroxylates a specific proline found in each of the oxygen-dependent degradation (ODD) domains (N-terminal, NODD, and C-terminal, CODD) of HIF1A. Also hydroxylates HIF2A. Has a preference for the CODD site for both HIF1A and HIF2A. Hydroxylated HIFs are then targeted for proteasomal degradation via the von Hippel-Lindau ubiquitination complex. Under hypoxic conditions, the hydroxylation reaction is attenuated allowing HIFs to escape degradation resulting in their translocation to the nucleus, heterodimerization with HIF1B, and increased expression of hypoxy-inducible genes. EGLN1 is the most important isozyme under normoxia and, through regulating the stability of HIF1, involved in various hypoxia-influenced processes such as angiogenesis in retinal and cardiac functionality.
source: Mus musculus (taxid: 10090)
 ID: COG0084
name: TatD Mg-dependent DNase [DNA replication, recombination, and repair]
score:99.83 (hhsearch)
coverage over query:
46-173
 ID: PF01026
score: 99.54 (hhsearch)
coverage over query:
42-173
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1xwy chain A
(confident match)
coverage over query:
79-173
psy4448 487 ID: D0Z9R0 (portable match)
name: Tat-linked quality control protein TatD
def: Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Although TatD is not required for export activity, it is a central component of a quality control system that is linked to the Tat translocation system. May act by degrading wild-type pre-protein molecules that are misfolded. Shows magnesium-dependent DNase activity.
source: Edwardsiella tarda (strain EIB202) (taxid: 498217)
 ID: COG0084
name: TatD Mg-dependent DNase [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
1-406
 ID: PF01026
score: 100.00 (hhsearch)
coverage over query:
4-405
 no hit PDB ID: 2xio chain A
(very confident match)
coverage over query:
1-187,293-408
psy4673 171 ID: Q9L6M2 (portable match)
name: Tat-linked quality control protein TatD
def: Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Although TatD is not required for export activity, it is a central component of a quality control system that is linked to the Tat translocation system. May act by degrading wild-type pre-protein molecules that are misfolded. Shows magnesium-dependent DNase activity.
source: Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)
 ID: COG0084
name: TatD Mg-dependent DNase [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
23-170
 ID: PF01026
score: 100.00 (hhsearch)
coverage over query:
26-170
 no hit PDB ID: 3rcm chain A
(very confident match)
coverage over query:
23-170
psy4672 78 no hit ID: COG0084
name: TatD Mg-dependent DNase [DNA replication, recombination, and repair]
score:99.93 (hhsearch)
coverage over query:
1-77
 ID: PF01026
score: 99.80 (hhsearch)
coverage over query:
1-77
 no hit PDB ID: 3e2v chain A
(very confident match)
coverage over query:
1-59
psy7584 67 ID: P08266 (very confident match)
name: DNA-directed RNA polymerase II subunit RPB2
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB2 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:99.83 (hhsearch)
coverage over query:
12-67
 ID: PF00562
score: 99.81 (hhsearch)
coverage over query:
11-67
 ID: GO:0005665 (very confident match)
name: DNA-directed RNA polymerase II, core complex
 PDB ID: 3h0g chain B
(very confident match)
coverage over query:
8-67
psy7583 451 ID: P08266 (confident match)
name: DNA-directed RNA polymerase II subunit RPB2
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB2 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
1-450
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
1-357
 ID: GO:0005730 (very confident match)
name: nucleolus
 PDB ID: 3h0g chain B
(very confident match)
coverage over query:
1-50,96-450
psy8410 951 ID: Q9P7X8 (confident match)
name: Probable DNA-directed RNA polymerase I subunit RPA2
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest core component of RNA polymerase I which synthesizes ribosomal RNA precursors. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol I is composed of mobile elements and RPA2 is part of the core element with the central large cleft and probably a clamp element that moves to open and close the cleft.
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
47-951
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
652-951
 ID: GO:0005737 (confident match)
name: cytoplasm
 PDB ID: 3h0g chain B
(very confident match)
coverage over query:
63-775,804-951
psy8847 3080 ID: A9IJ22 (confident match)
name: DNA-directed RNA polymerase subunit beta'
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
source: Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) (taxid: 340100)
 ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
401-1707
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
1060-1678
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3lu0 chain C
(very confident match)
coverage over query:
397-1708
psy4067 1384 ID: O28392 (portable match)
name: DNA-directed RNA polymerase subunit B'
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The B (B''+B' and beta) subunits have been implicated in DNA promoter recognition and also in nucleotide binding.
source: Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)
 ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
52-1377
 ID: PF00562
score: 100.00 (hhsearch)
coverage over query:
909-1372
 ID: GO:0006351 (confident match)
name: transcription, DNA-dependent
 PDB ID: 3lu0 chain C
(very confident match)
coverage over query:
477-591,610-620,650-655
,688-742,757-781
,798-808,830-872
,914-923,955-1108
,1136-1144,1162-1377
psy7582 661 ID: P08266 (very confident match)
name: DNA-directed RNA polymerase II subunit RPB2
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Second largest component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Proposed to contribute to the polymerase catalytic activity and forms the polymerase active center together with the largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB2 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0085
name: RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
3-648
 ID: PF04563
score: 100.00 (hhsearch)
coverage over query:
18-180
 ID: GO:0005730 (very confident match)
name: nucleolus
 PDB ID: 3h0g chain B
(very confident match)
coverage over query:
1-606,621-660
psy1131 353 ID: P04052 (very confident match)
name: DNA-directed RNA polymerase II subunit RPB1
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
44-245
 ID: PF00623
score: 100.00 (hhsearch)
coverage over query:
82-206
 ID: GO:0005703 (very confident match)
name: polytene chromosome puff
 PDB ID: 3h0g chain A
(very confident match)
coverage over query:
142-353
psy3023 392 ID: P04052 (confident match)
name: DNA-directed RNA polymerase II subunit RPB1
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
12-392
 ID: PF04997
score: 100.00 (hhsearch)
coverage over query:
11-346
 ID: GO:0005703 (confident match)
name: polytene chromosome puff
 PDB ID: 3h0g chain A
(very confident match)
coverage over query:
3-392
psy16766 621 ID: O95602 (portable match)
name: DNA-directed RNA polymerase I subunit RPA1
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic core component of RNA polymerase I which synthesizes ribosomal RNA precursors. Forms the polymerase active center together with the second largest subunit. A single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol I. A bridging helix emanates from RPA1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol I by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition.
source: Homo sapiens (taxid: 9606)
 ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
119-596
 ID: PF04997
score: 100.00 (hhsearch)
coverage over query:
119-524
 ID: GO:0044424 (confident match)
name: intracellular part
 PDB ID: 3h0g chain A
(very confident match)
coverage over query:
113-263,284-289,305-455
,472-602
psy16767 1020 ID: Q980R2 (portable match)
name: DNA-directed RNA polymerase subunit A'
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
source: Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057)
 ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
1-435
 ID: PF04998
score: 100.00 (hhsearch)
coverage over query:
361-963
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 3h0g chain A
(very confident match)
coverage over query:
1-235,252-501,514-711
,731-747,765-810
,823-1014
psy3022 258 ID: P04052 (very confident match)
name: DNA-directed RNA polymerase II subunit RPB1
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:99.84 (hhsearch)
coverage over query:
2-131
 ID: PF04998
score: 100.00 (hhsearch)
coverage over query:
101-211
 ID: GO:0005703 (very confident match)
name: polytene chromosome puff
 PDB ID: 3h0g chain A
(very confident match)
coverage over query:
2-234
psy16768 154 ID: O95602 (confident match)
name: DNA-directed RNA polymerase I subunit RPA1
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic core component of RNA polymerase I which synthesizes ribosomal RNA precursors. Forms the polymerase active center together with the second largest subunit. A single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol I. A bridging helix emanates from RPA1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol I by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition.
source: Homo sapiens (taxid: 9606)
 ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:98.38 (hhsearch)
coverage over query:
5-122
 ID: PF04998
score: 99.88 (hhsearch)
coverage over query:
3-92
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3h0g chain A
(very confident match)
coverage over query:
5-126
psy6965 1764 ID: Q976A6 (portable match)
name: DNA-directed RNA polymerase subunit A''
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
source: Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (taxid: 273063)
 ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:99.29 (hhsearch)
coverage over query:
1531-1679
 ID: PF04998
score: 99.87 (hhsearch)
coverage over query:
1531-1629
 ID: GO:0044446 (confident match)
name: intracellular organelle part
 PDB ID: 3h0g chain A
(very confident match)
coverage over query:
1386-1408,1419-1682
psy13846 1423 ID: A4YCR0 (portable match)
name: DNA-directed RNA polymerase subunit A''
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
source: Metallosphaera sedula (strain ATCC 51363 / DSM 5348) (taxid: 399549)
 ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
79-674
 ID: PF04998
score: 100.00 (hhsearch)
coverage over query:
622-999
 no hit PDB ID: 3h0g chain A
(very confident match)
coverage over query:
76-255,272-405,420-688
,713-743,754-836
,849-854,880-880
,935-948,960-971
,987-998,1020-1031
,1043-1056,1077-1399
psy3015 1791 ID: B0R8D4 (portable match)
name: DNA-directed RNA polymerase subunit A'
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
source: Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) (taxid: 478009)
 ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
45-466
 ID: PF04998
score: 100.00 (hhsearch)
coverage over query:
391-456
 no hit PDB ID: 3h0g chain A
(very confident match)
coverage over query:
45-225,272-493,572-573
,620-620,635-635
,709-761,777-785
,833-840,859-864
,881-888,951-1037
,1051-1406
psy6966 155 ID: P04052 (portable match)
name: DNA-directed RNA polymerase II subunit RPB1
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:96.00 (hhsearch)
coverage over query:
103-154
 ID: PF04998
score: 99.23 (hhsearch)
coverage over query:
102-155
 no hit PDB ID: 3h0g chain A
(very confident match)
coverage over query:
74-155
psy13848 409 ID: P04051 (portable match)
name: DNA-directed RNA polymerase III subunit RPC1
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. Forms the polymerase active center together with the second largest subunit. A single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol III. A bridging helix emanates from RPC1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol III by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition.
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0086
name: RpoC DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
2-332
 ID: PF05000
score: 99.94 (hhsearch)
coverage over query:
134-239
 no hit PDB ID: 3h0g chain A
(very confident match)
coverage over query:
2-306
psy16477 172 ID: P39023 (confident match)
name: 60S ribosomal protein L3
def: The L3 protein is a component of the large subunit of cytoplasmic ribosomes.
source: Homo sapiens (taxid: 9606)
 ID: COG0087
name: RplC Ribosomal protein L3 [Translation, ribosomal structure and biogenesis]
score:99.88 (hhsearch)
coverage over query:
28-151
 ID: PF00297
score: 99.95 (hhsearch)
coverage over query:
15-151
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 2zkr chain b
(very confident match)
coverage over query:
4-118
psy451 296 ID: P18665 (confident match)
name: 39S ribosomal protein L3, mitochondrial
def:
source: Rattus norvegicus (taxid: 10116)
 ID: COG0087
name: RplC Ribosomal protein L3 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
117-296
 ID: PF00297
score: 100.00 (hhsearch)
coverage over query:
124-296
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2ftc chain C
(very confident match)
coverage over query:
117-159,171-296
psy16472 630 ID: Q759R7 (confident match)
name: 60S ribosomal protein L3
def:
source: Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)
 ID: COG0087
name: RplC Ribosomal protein L3 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
80-556
 ID: PF00297
score: 100.00 (hhsearch)
coverage over query:
87-550
 ID: GO:0071353 (confident match)
name: cellular response to interleukin-4
 PDB ID: 2zkr chain b
(very confident match)
coverage over query:
38-205,242-244,312-438
,501-594
psy5946 63 ID: Q32PI6 (confident match)
name: 39S ribosomal protein L4, mitochondrial
def:
source: Bos taurus (taxid: 9913)
 ID: COG0088
name: RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
score:99.01 (hhsearch)
coverage over query:
2-58
 ID: PF00573
score: 99.39 (hhsearch)
coverage over query:
2-55
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2ftc chain D
(very confident match)
coverage over query:
2-55
psy13118 286 ID: Q58DW0 (confident match)
name: 60S ribosomal protein L4
def:
source: Bos taurus (taxid: 9913)
 ID: COG0088
name: RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
20-283
 ID: PF00573
score: 99.97 (hhsearch)
coverage over query:
37-273
 ID: GO:0005774 (confident match)
name: vacuolar membrane
 PDB ID: 2zkr chain c
(very confident match)
coverage over query:
16-107,172-172,191-286
psy5944 309 ID: Q32PI6 (confident match)
name: 39S ribosomal protein L4, mitochondrial
def:
source: Bos taurus (taxid: 9913)
 ID: COG0088
name: RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
57-290
 ID: PF00573
score: 100.00 (hhsearch)
coverage over query:
72-287
 no hit no hit
psy6375 86 ID: A9A9B6 (very confident match)
name: 50S ribosomal protein L23P
def: Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome.
source: Methanococcus maripaludis (strain C6 / ATCC BAA-1332) (taxid: 444158)
 ID: COG0089
name: RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
score:99.97 (hhsearch)
coverage over query:
3-81
 ID: PF00276
score: 99.97 (hhsearch)
coverage over query:
4-82
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 2zkr chain s
(very confident match)
coverage over query:
1-86
psy6374 305 ID: P62751 (confident match)
name: 60S ribosomal protein L23a
def: This protein binds to a specific region on the 26S rRNA.
source: Mus musculus (taxid: 10090)
 ID: COG0089
name: RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
score:99.91 (hhsearch)
coverage over query:
222-304
 ID: PF00276
score: 99.89 (hhsearch)
coverage over query:
223-301
 ID: GO:0016020 (confident match)
name: membrane
 PDB ID: 2zkr chain s
(very confident match)
coverage over query:
161-305
psy5391 157 ID: Q9GYS9 (confident match)
name: Probable 39S ribosomal protein L23, mitochondrial
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0089
name: RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
score:99.55 (hhsearch)
coverage over query:
35-110
 ID: PF00276
score: 99.70 (hhsearch)
coverage over query:
35-108
 no hit PDB ID: 3u5e chain X
(confident match)
coverage over query:
36-74,93-101
psy13959 248 ID: P62918 (very confident match)
name: 60S ribosomal protein L8
def:
source: Mus musculus (taxid: 10090)
 ID: COG0090
name: RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-245
 ID: PF03947
score: 100.00 (hhsearch)
coverage over query:
96-231
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3jyw chain B
(very confident match)
coverage over query:
2-244
psy7141 215 ID: Q9VXB5 (very confident match)
name: 39S ribosomal protein L22, mitochondrial
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0091
name: RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
65-182
 ID: PF00237
score: 100.00 (hhsearch)
coverage over query:
76-180
 ID: GO:0005762 (confident match)
name: mitochondrial large ribosomal subunit
 PDB ID: 2ftc chain M
(very confident match)
coverage over query:
75-184
psy11361 200 ID: Q29IM3 (very confident match)
name: 60S ribosomal protein L17
def:
source: Drosophila pseudoobscura pseudoobscura (taxid: 46245)
 ID: COG0091
name: RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
4-169
 ID: PF00237
score: 100.00 (hhsearch)
coverage over query:
17-167
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 2zkr chain r
(very confident match)
coverage over query:
1-134,150-195
psy17945 214 ID: P23396 (confident match)
name: 40S ribosomal protein S3
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0092
name: RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
score:99.94 (hhsearch)
coverage over query:
1-94
 ID: PF00189
score: 99.81 (hhsearch)
coverage over query:
1-62
 ID: GO:0016363 (confident match)
name: nuclear matrix
 PDB ID: 2zkq chain c
(very confident match)
coverage over query:
1-101
psy8115 218 ID: P23396 (confident match)
name: 40S ribosomal protein S3
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0092
name: RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
81-207
 ID: PF07650
score: 99.60 (hhsearch)
coverage over query:
95-171
 ID: GO:0009506 (very confident match)
name: plasmodesma
 PDB ID: 2zkq chain c
(very confident match)
coverage over query:
76-207
psy17938 307 ID: P23396 (confident match)
name: 40S ribosomal protein S3
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0092
name: RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-154
 ID: PF14910
score: 100.00 (hhsearch)
coverage over query:
141-290
 ID: GO:0009506 (very confident match)
name: plasmodesma
 PDB ID: 2zkq chain c
(very confident match)
coverage over query:
2-123,136-155
psy6163 137 ID: P62830 (very confident match)
name: 60S ribosomal protein L23
def:
source: Mus musculus (taxid: 10090)
 ID: COG0093
name: RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
19-133
 ID: PF00238
score: 100.00 (hhsearch)
coverage over query:
19-133
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3u5e chain V
(very confident match)
coverage over query:
5-133
psy6164 64 ID: P62830 (confident match)
name: 60S ribosomal protein L23
def:
source: Mus musculus (taxid: 10090)
 ID: COG0093
name: RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
score:99.26 (hhsearch)
coverage over query:
19-48
 ID: PF00238
score: 99.03 (hhsearch)
coverage over query:
19-46
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3u5e chain V
(very confident match)
coverage over query:
6-56
psy4063 205 ID: B3CT15 (portable match)
name: 50S ribosomal protein L14
def: Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.
source: Orientia tsutsugamushi (strain Ikeda) (taxid: 334380)
 ID: COG0093
name: RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
34-158
 ID: PF00238
score: 100.00 (hhsearch)
coverage over query:
34-157
 no hit PDB ID: 1whi chain A
(very confident match)
coverage over query:
34-135,146-157
psy4541 309 ID: B3CT15 (portable match)
name: 50S ribosomal protein L14
def: Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.
source: Orientia tsutsugamushi (strain Ikeda) (taxid: 334380)
 ID: COG0093
name: RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
185-309
 ID: PF00238
score: 100.00 (hhsearch)
coverage over query:
185-309
 no hit PDB ID: 3bbo chain M
(very confident match)
coverage over query:
185-286,298-309
psy1616 237 ID: Q29205 (confident match)
name: 60S ribosomal protein L11
def: Binds to 5S ribosomal RNA (By similarity). Required for rRNA maturation and formation of the 60S ribosomal subunits. Promotes nucleolar location of PML.
source: Sus scrofa (taxid: 9823)
 ID: COG0094
name: RplE Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
30-219
 ID: PF00673
score: 99.95 (hhsearch)
coverage over query:
111-228
 no hit PDB ID: 2zkr chain d
(very confident match)
coverage over query:
44-234
psy2667 261 ID: Q8FA49 (portable match)
name: Lipoate-protein ligase A
def: Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl onto the lipoyl domains of lipoate-dependent enzymes.
source: Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)
 ID: COG0095
name: LplA Lipoate-protein ligase A [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
53-260
 ID: PF03099
score: 99.81 (hhsearch)
coverage over query:
96-249
 ID: GO:0005737 (confident match)
name: cytoplasm
 PDB ID: 2e5a chain A
(very confident match)
coverage over query:
52-165,207-260
psy8036 194 ID: O46419 (portable match)
name: Lipoyltransferase 1, mitochondrial
def: Catalyzes the transfer of the lipoyl group from lipoyl-AMP to the specific lysine residue of lipoyl domains of lipoate-dependent enzymes.
source: Bos taurus (taxid: 9913)
 ID: COG0095
name: LplA Lipoate-protein ligase A [Coenzyme metabolism]
score:99.35 (hhsearch)
coverage over query:
1-98
 ID: PF10437
score: 99.76 (hhsearch)
coverage over query:
98-192
 no hit PDB ID: 2e5a chain A
(very confident match)
coverage over query:
1-56,67-191
psy8042 90 ID: Q8VCM4 (portable match)
name: Lipoyltransferase 1, mitochondrial
def: Catalyzes the transfer of the lipoyl group from lipoyl-AMP to the specific lysine residue of lipoyl domains of lipoate-dependent enzymes.
source: Mus musculus (taxid: 10090)
 ID: COG0095
name: LplA Lipoate-protein ligase A [Coenzyme metabolism]
score:98.90 (hhsearch)
coverage over query:
1-34
 no hit no hit PDB ID: 2e5a chain A
(very confident match)
coverage over query:
1-56
psy13246 81 ID: P42798 (confident match)
name: 40S ribosomal protein S15a-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0096
name: RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]
score:99.95 (hhsearch)
coverage over query:
1-75
 ID: PF00410
score: 99.80 (hhsearch)
coverage over query:
5-75
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 2xzm chain H
(very confident match)
coverage over query:
1-75
psy13245 130 ID: P48149 (very confident match)
name: 40S ribosomal protein S15Aa
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0096
name: RpsH Ribosomal protein S8 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-130
 ID: PF00410
score: 100.00 (hhsearch)
coverage over query:
5-130
 ID: GO:0022627 (very confident match)
name: cytosolic small ribosomal subunit
 PDB ID: 2xzm chain H
(very confident match)
coverage over query:
1-130
psy7622 179 ID: P50882 (very confident match)
name: 60S ribosomal protein L9
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0097
name: RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
5-161
 ID: PF00347
score: 99.38 (hhsearch)
coverage over query:
5-59
 ID: GO:0005730 (very confident match)
name: nucleolus
 PDB ID: 2zkr chain e
(very confident match)
coverage over query:
4-167
psy7621 247 ID: P50882 (confident match)
name: 60S ribosomal protein L9
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0097
name: RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
7-242
 ID: PF00347
score: 99.17 (hhsearch)
coverage over query:
21-73
 ID: GO:0005730 (very confident match)
name: nucleolus
 PDB ID: 2zkr chain e
(very confident match)
coverage over query:
8-72,143-247
psy7620 189 ID: P50882 (very confident match)
name: 60S ribosomal protein L9
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0097
name: RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-184
 ID: PF00347
score: 99.79 (hhsearch)
coverage over query:
12-85
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 2zkr chain e
(very confident match)
coverage over query:
1-188
psy7547 138 ID: P49210 (portable match)
name: 60S ribosomal protein L9
def:
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0097
name: RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
score:99.23 (hhsearch)
coverage over query:
4-79
 ID: PF00347
score: 98.46 (hhsearch)
coverage over query:
3-39
 no hit PDB ID: 2zkr chain e
(very confident match)
coverage over query:
7-40,61-77
psy8860 374 ID: A9IHT3 (confident match)
name: 50S ribosomal protein L6
def: This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.
source: Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) (taxid: 340100)
 ID: COG0097
name: RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
118-284
 ID: PF00410
score: 100.00 (hhsearch)
coverage over query:
5-126
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 3bbo chain Q
(very confident match)
coverage over query:
270-374
psy4335 152 ID: P46791 (very confident match)
name: 40S ribosomal protein S2 (Fragment)
def:
source: Cricetulus griseus (taxid: 10029)
 ID: COG0098
name: RpsE Ribosomal protein S5 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
8-151
 ID: PF00333
score: 99.94 (hhsearch)
coverage over query:
38-104
 ID: GO:0005618 (very confident match)
name: cell wall
 PDB ID: 3iz6 chain E
(very confident match)
coverage over query:
4-151
psy12294 123 ID: O74892 (confident match)
name: 40S ribosomal protein S2
def:
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0098
name: RpsE Ribosomal protein S5 [Translation, ribosomal structure and biogenesis]
score:99.96 (hhsearch)
coverage over query:
17-108
 ID: PF03719
score: 99.91 (hhsearch)
coverage over query:
29-92
 ID: GO:0005618 (very confident match)
name: cell wall
 PDB ID: 3iz6 chain E
(very confident match)
coverage over query:
15-119
psy10165 337 ID: Q5REJ1 (confident match)
name: 28S ribosomal protein S5, mitochondrial
def:
source: Pongo abelii (taxid: 9601)
 ID: COG0098
name: RpsE Ribosomal protein S5 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
133-292
 ID: PF03719
score: 99.94 (hhsearch)
coverage over query:
212-285
 ID: GO:0043229 (confident match)
name: intracellular organelle
 PDB ID: 1pkp chain A
(very confident match)
coverage over query:
134-277
psy1365 140 ID: P62272 (very confident match)
name: 40S ribosomal protein S18
def: Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA.
source: Sus scrofa (taxid: 9823)
 ID: COG0099
name: RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-140
 ID: PF00416
score: 100.00 (hhsearch)
coverage over query:
1-130
 ID: GO:0005618 (very confident match)
name: cell wall
 PDB ID: 3iz6 chain M
(very confident match)
coverage over query:
1-140
psy8858 121 ID: A6T3I1 (very confident match)
name: 30S ribosomal protein S13
def: Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites.
source: Janthinobacterium sp. (strain Marseille) (taxid: 375286)
 ID: COG0099
name: RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-120
 ID: PF00416
score: 100.00 (hhsearch)
coverage over query:
3-108
 ID: GO:0022627 (very confident match)
name: cytosolic small ribosomal subunit
 PDB ID: 3bbn chain M
(very confident match)
coverage over query:
1-59,70-111
psy3230 151 ID: Q7QEH1 (very confident match)
name: 40S ribosomal protein S14a
def:
source: Anopheles gambiae (taxid: 7165)
 ID: COG0100
name: RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
21-148
 ID: PF00411
score: 100.00 (hhsearch)
coverage over query:
29-147
 ID: GO:0005811 (very confident match)
name: lipid particle
 PDB ID: 2xzm chain K
(very confident match)
coverage over query:
1-151
psy13610 123 ID: Q2FW31 (confident match)
name: 30S ribosomal protein S11
def: Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome.
source: Staphylococcus aureus (strain NCTC 8325) (taxid: 93061)
 ID: COG0100
name: RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
23-114
 ID: PF00411
score: 100.00 (hhsearch)
coverage over query:
26-114
 ID: GO:0022627 (confident match)
name: cytosolic small ribosomal subunit
 PDB ID: 3bbn chain K
(very confident match)
coverage over query:
23-114
psy8857 133 ID: Q46WG7 (very confident match)
name: 30S ribosomal protein S11
def: Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome.
source: Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198)
 ID: COG0100
name: RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
13-133
 ID: PF00411
score: 100.00 (hhsearch)
coverage over query:
23-132
 ID: GO:0022627 (very confident match)
name: cytosolic small ribosomal subunit
 PDB ID: 3bbn chain K
(very confident match)
coverage over query:
17-133
psy12402 375 ID: Q4KM92 (confident match)
name: tRNA pseudouridine synthase A, mitochondrial
def: Converts specific uridines to PSI in a number of tRNA substrates. Acts on positions 27/28 in the anticodon stem and also positions 34 and 36 in the anticodon of an intron containing tRNA. Involved in regulation of nuclear receptor activity possibly through pseudouridylation of SRA1 RNA.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0101
name: TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-265
 ID: PF01416
score: 99.84 (hhsearch)
coverage over query:
154-260
 ID: GO:0005737 (confident match)
name: cytoplasm
 no hit
psy13081 335 ID: Q12VJ7 (confident match)
name: tRNA pseudouridine synthase A
def: Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
source: Methanococcoides burtonii (strain DSM 6242) (taxid: 259564)
 ID: COG0101
name: TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-262
 ID: PF01416
score: 99.89 (hhsearch)
coverage over query:
141-257
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1dj0 chain A
(very confident match)
coverage over query:
1-178,189-263
psy3604 496 ID: Q09524 (portable match)
name: Probable tRNA pseudouridine synthase tag-124
def: Formation of pseudouridine at position 38 and 39 in the anticodon stem and loop of transfer RNAs.
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0101
name: TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
96-383
 ID: PF07524
score: 99.64 (hhsearch)
coverage over query:
5-138
 no hit no hit
psy9430 255 ID: O42848 (confident match)
name: 60S ribosomal protein L16-A
def:
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
72-206
 ID: PF00572
score: 100.00 (hhsearch)
coverage over query:
86-201
 ID: GO:0005615 (confident match)
name: extracellular space
 PDB ID: 4a17 chain I
(very confident match)
coverage over query:
83-252
psy6291 79 ID: Q3SYS1 (portable match)
name: 39S ribosomal protein L13, mitochondrial
def:
source: Bos taurus (taxid: 9913)
 ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:99.33 (hhsearch)
coverage over query:
2-36
 ID: PF00572
score: 99.35 (hhsearch)
coverage over query:
2-36
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2ftc chain H
(very confident match)
coverage over query:
2-48
psy6284 270 ID: Q9VJ38 (confident match)
name: 39S ribosomal protein L13, mitochondrial
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:99.95 (hhsearch)
coverage over query:
9-107
 ID: PF00572
score: 99.93 (hhsearch)
coverage over query:
17-107
 ID: GO:0005761 (confident match)
name: mitochondrial ribosome
 PDB ID: 2ftc chain H
(very confident match)
coverage over query:
1-107
psy6264 120 ID: Q9VJ38 (confident match)
name: 39S ribosomal protein L13, mitochondrial
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:99.98 (hhsearch)
coverage over query:
1-87
 ID: PF00572
score: 99.97 (hhsearch)
coverage over query:
1-84
 ID: GO:0005761 (confident match)
name: mitochondrial ribosome
 PDB ID: 2ftc chain H
(very confident match)
coverage over query:
1-89
psy9436 188 ID: O42848 (confident match)
name: 60S ribosomal protein L16-A
def:
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0102
name: RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
score:99.36 (hhsearch)
coverage over query:
44-105
 ID: PF00572
score: 99.49 (hhsearch)
coverage over query:
23-99
 no hit PDB ID: 4a17 chain I
(very confident match)
coverage over query:
46-187
psy8077 223 ID: P14131 (confident match)
name: 40S ribosomal protein S16
def:
source: Mus musculus (taxid: 10090)
 ID: COG0103
name: RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
28-202
 ID: PF00380
score: 100.00 (hhsearch)
coverage over query:
33-202
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 3iz6 chain I
(very confident match)
coverage over query:
25-65,110-202
psy6189 539 ID: Q9D7N3 (confident match)
name: 28S ribosomal protein S9, mitochondrial
def:
source: Mus musculus (taxid: 10090)
 ID: COG0103
name: RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
414-539
 ID: PF00380
score: 100.00 (hhsearch)
coverage over query:
417-539
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 3bbn chain I
(very confident match)
coverage over query:
415-539
psy9398 154 ID: A6SUN8 (confident match)
name: 30S ribosomal protein S9
def:
source: Janthinobacterium sp. (strain Marseille) (taxid: 375286)
 ID: COG0103
name: RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis]
score:99.97 (hhsearch)
coverage over query:
71-154
 ID: PF00572
score: 99.97 (hhsearch)
coverage over query:
2-92
 ID: GO:0005840 (confident match)
name: ribosome
 PDB ID: 3iz6 chain I
(very confident match)
coverage over query:
71-154
psy3917 295 ID: Q9Y0Y2 (confident match)
name: Adenylosuccinate synthetase
def: Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0104
name: PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
41-292
 ID: PF00709
score: 100.00 (hhsearch)
coverage over query:
43-292
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2v40 chain A
(very confident match)
coverage over query:
36-292
psy6076 188 ID: Q39839 (confident match)
name: Nucleoside diphosphate kinase 1
def: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
source: Glycine max (taxid: 3847)
 ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
23-147
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
24-139
 ID: GO:0004550 (very confident match)
name: nucleoside diphosphate kinase activity
 PDB ID: 3l7u chain A
(very confident match)
coverage over query:
19-140
psy8252 129 ID: A4Y7C9 (confident match)
name: Nucleoside diphosphate kinase
def: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
source: Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) (taxid: 319224)
 ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
3-124
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
3-127
 ID: GO:0005856 (confident match)
name: cytoskeleton
 PDB ID: 1pku chain A
(very confident match)
coverage over query:
3-127
psy10009 235 ID: Q05982 (confident match)
name: Nucleoside diphosphate kinase A
def: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Possesses nucleoside-diphosphate kinase, serine/threonine-specific protein kinase, geranyl and farnesyl pyrophosphate kinase, histidine protein kinase and 3'-5' exonuclease activities. Involved in cell proliferation, differentiation and development, signal transduction, G protein-coupled receptor endocytosis, and gene expression. Required for neural development including neural patterning and cell fate determination.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
100-219
 ID: PF00334
score: 99.97 (hhsearch)
coverage over query:
100-222
 ID: GO:0005882 (confident match)
name: intermediate filament
 PDB ID: 4fkx chain A
(very confident match)
coverage over query:
99-235
psy5168 113 ID: Q2EN76 (confident match)
name: Nucleoside diphosphate kinase B
def: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Negatively regulates Rho activity by interacting with AKAP13/LBC. Exhibits histidine protein kinase activity.
source: Sus scrofa (taxid: 9823)
 ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
5-112
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
6-112
 ID: GO:0005882 (confident match)
name: intermediate filament
 PDB ID: 4fkx chain A
(very confident match)
coverage over query:
4-112
psy1618 178 ID: B3Q9R4 (confident match)
name: Nucleoside diphosphate kinase
def: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
source: Rhodopseudomonas palustris (strain TIE-1) (taxid: 395960)
 ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
48-178
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
49-178
 ID: GO:0045839 (confident match)
name: negative regulation of mitosis
 PDB ID: 4fkx chain A
(very confident match)
coverage over query:
47-178
psy4316 377 ID: Q3A2Z3 (portable match)
name: Nucleoside diphosphate kinase
def: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
source: Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) (taxid: 338963)
 ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
162-297
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
163-299
 no hit PDB ID: 2az3 chain A
(very confident match)
coverage over query:
161-304
psy498 189 ID: Q5E9Y9 (portable match)
name: Nucleoside diphosphate kinase 7
def: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
source: Bos taurus (taxid: 9913)
 ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
65-186
 ID: PF00334
score: 100.00 (hhsearch)
coverage over query:
66-186
 no hit PDB ID: 1xqi chain A
(very confident match)
coverage over query:
65-186
psy499 122 ID: Q9Y5B8 (portable match)
name: Nucleoside diphosphate kinase 7
def: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
source: Homo sapiens (taxid: 9606)
 ID: COG0105
name: Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
score:99.90 (hhsearch)
coverage over query:
1-74
 ID: PF00334
score: 99.89 (hhsearch)
coverage over query:
2-77
 no hit PDB ID: 3ztp chain A
(very confident match)
coverage over query:
2-77
psy2382 527 ID: Q882G0 (confident match)
name: 3,4-dihydroxy-2-butanone 4-phosphate synthase
def: Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
source: Pseudomonas syringae pv. tomato (strain DC3000) (taxid: 223283)
 ID: COG0108
name: RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
5-206
 ID: PF00926
score: 100.00 (hhsearch)
coverage over query:
9-202
 ID: GO:0044446 (confident match)
name: intracellular organelle part
 PDB ID: 1g57 chain A
(very confident match)
coverage over query:
6-208
psy1910 153 ID: Q298G6 (confident match)
name: 4-hydroxybenzoate polyprenyltransferase, mitochondrial
def: Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.
source: Drosophila pseudoobscura pseudoobscura (taxid: 46245)
 ID: COG0109
name: CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
2-153
 ID: PF01040
score: 99.88 (hhsearch)
coverage over query:
10-152
 ID: GO:0004659 (confident match)
name: prenyltransferase activity
 no hit
psy13659 306 ID: Q13CY5 (confident match)
name: Protoheme IX farnesyltransferase
def: Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
source: Rhodopseudomonas palustris (strain BisB5) (taxid: 316057)
 ID: COG0109
name: CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
2-261
 ID: PF01040
score: 99.96 (hhsearch)
coverage over query:
9-185
 ID: GO:0006784 (confident match)
name: heme a biosynthetic process
 PDB ID: 1vt4 chain I
(portable match)
coverage over query:
94-249
psy13665 105 no hit ID: COG0109
name: CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
score:97.13 (hhsearch)
coverage over query:
59-103
 no hit no hit no hit
psy6351 168 ID: B5RBG3 (portable match)
name: Glyoxylate/hydroxypyruvate reductase A
def: Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.
source: Salmonella gallinarum (strain 287/91 / NCTC 13346) (taxid: 550538)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:99.82 (hhsearch)
coverage over query:
1-103
 ID: PF00389
score: 92.87 (hhsearch)
coverage over query:
45-95
 no hit PDB ID: 3k5p chain A
(very confident match)
coverage over query:
1-60,78-116
psy6348 333 ID: B1L765 (confident match)
name: Glyoxylate reductase
def:
source: Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-283
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
64-241
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2g76 chain A
(very confident match)
coverage over query:
1-266
psy13054 1128 ID: B1L765 (portable match)
name: Glyoxylate reductase
def:
source: Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
844-1124
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
917-1097
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2gcg chain A
(very confident match)
coverage over query:
845-1128
psy7383 501 ID: Q9Z2F5 (very confident match)
name: C-terminal-binding protein 1
def: Involved in controlling the equilibrium between tubular and stacked structures in the Golgi complex. Corepressor targeting diverse transcription regulators such as GLIS2. Has dehydrogenase activity. Functions in brown adipose tissue (BAT) differentiation.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
60-353
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
134-318
 ID: GO:0042803 (very confident match)
name: protein homodimerization activity
 no hit
psy3240 274 ID: B1L765 (portable match)
name: Glyoxylate reductase
def:
source: Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
9-273
 ID: PF02826
score: 100.00 (hhsearch)
coverage over query:
9-241
 ID: GO:0055114 (confident match)
name: oxidation-reduction process
 PDB ID: 2gcg chain A
(very confident match)
coverage over query:
9-144,203-274
psy5266 180 ID: Q9UBQ7 (confident match)
name: Glyoxylate reductase/hydroxypyruvate reductase
def: Enzyme with hydroxy-pyruvate reductase, glyoxylate reductase and D-glycerate dehydrogenase enzymatic activities. Reduces hydroxypyruvate to D-glycerate, glyoxylate to glycolate oxidizes D-glycerate to hydroxypyruvate.
source: Homo sapiens (taxid: 9606)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:99.98 (hhsearch)
coverage over query:
11-133
 ID: PF02826
score: 99.97 (hhsearch)
coverage over query:
11-135
 ID: GO:0055114 (confident match)
name: oxidation-reduction process
 PDB ID: 4g2n chain A
(very confident match)
coverage over query:
11-133
psy5259 294 ID: Q9UBQ7 (confident match)
name: Glyoxylate reductase/hydroxypyruvate reductase
def: Enzyme with hydroxy-pyruvate reductase, glyoxylate reductase and D-glycerate dehydrogenase enzymatic activities. Reduces hydroxypyruvate to D-glycerate, glyoxylate to glycolate oxidizes D-glycerate to hydroxypyruvate.
source: Homo sapiens (taxid: 9606)
 ID: COG0111
name: SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-294
 ID: PF02826
score: 99.97 (hhsearch)
coverage over query:
165-294
 ID: GO:0055114 (confident match)
name: oxidation-reduction process
 PDB ID: 2gcg chain A
(very confident match)
coverage over query:
1-102,153-294
psy10669 337 ID: A4XL61 (confident match)
name: Serine hydroxymethyltransferase
def: Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
source: Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) (taxid: 351627)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
9-333
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
11-304
 ID: GO:0015630 (confident match)
name: microtubule cytoskeleton
 PDB ID: 3ecd chain A
(very confident match)
coverage over query:
4-332
psy10666 240 ID: P34897 (confident match)
name: Serine hydroxymethyltransferase, mitochondrial
def: Contributes to the de novo mitochondrial thymidylate biosynthesis pathway. Required to prevent uracil accumulation in mtDNA. Interconversion of serine and glycine. Associates with mitochondrial DNA.
source: Homo sapiens (taxid: 9606)
 ID: COG0112
name: GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
6-196
 ID: PF00464
score: 100.00 (hhsearch)
coverage over query:
6-151
 no hit PDB ID: 3ou5 chain A
(very confident match)
coverage over query:
6-151,162-182
psy15126 300 ID: Q9ZMR8 (confident match)
name: Delta-aminolevulinic acid dehydratase
def: Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen.
source: Helicobacter pylori (strain J99) (taxid: 85963)
 ID: COG0113
name: HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
2-299
 ID: PF00490
score: 100.00 (hhsearch)
coverage over query:
2-296
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1w1z chain A
(very confident match)
coverage over query:
2-155,208-297
psy15130 263 ID: Q9SFH9 (portable match)
name: Delta-aminolevulinic acid dehydratase, chloroplastic
def: Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0113
name: HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
28-243
 ID: PF00490
score: 100.00 (hhsearch)
coverage over query:
28-242
 no hit PDB ID: 1pv8 chain A
(very confident match)
coverage over query:
28-243
psy7883 607 ID: O17214 (very confident match)
name: Probable fumarate hydratase, mitochondrial
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0114
name: FumC Fumarase [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
5-466
 ID: PF00206
score: 100.00 (hhsearch)
coverage over query:
14-346
 ID: GO:0006108 (very confident match)
name: malate metabolic process
 PDB ID: 3gtd chain A
(very confident match)
coverage over query:
3-465
psy13008 638 ID: O17214 (very confident match)
name: Probable fumarate hydratase, mitochondrial
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0114
name: FumC Fumarase [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
5-466
 ID: PF00206
score: 100.00 (hhsearch)
coverage over query:
14-346
 ID: GO:0006108 (very confident match)
name: malate metabolic process
 PDB ID: 3gtd chain A
(very confident match)
coverage over query:
2-465
psy16748 291 ID: P14408 (confident match)
name: Fumarate hydratase, mitochondrial
def:
source: Rattus norvegicus (taxid: 10116)
 ID: COG0114
name: FumC Fumarase [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
69-246
 ID: PF00206
score: 99.46 (hhsearch)
coverage over query:
78-245
 ID: GO:0006108 (confident match)
name: malate metabolic process
 PDB ID: 1vdk chain A
(very confident match)
coverage over query:
70-188
psy10160 558 ID: O17214 (confident match)
name: Probable fumarate hydratase, mitochondrial
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0114
name: FumC Fumarase [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
261-558
 ID: PF00206
score: 100.00 (hhsearch)
coverage over query:
240-437
 ID: GO:0045335 (confident match)
name: phagocytic vesicle
 PDB ID: 1yfm chain A
(very confident match)
coverage over query:
337-558
psy16306 302 ID: P54687 (confident match)
name: Branched-chain-amino-acid aminotransferase, cytosolic
def: Catalyzes the first reaction in the catabolism of the essential branched chain amino acids leucine, isoleucine, and valine.
source: Homo sapiens (taxid: 9606)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:99.77 (hhsearch)
coverage over query:
44-155
 ID: PF01063
score: 97.86 (hhsearch)
coverage over query:
89-154
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3dth chain A
(very confident match)
coverage over query:
19-156
psy10038 51 ID: P54687 (confident match)
name: Branched-chain-amino-acid aminotransferase, cytosolic
def: Catalyzes the first reaction in the catabolism of the essential branched chain amino acids leucine, isoleucine, and valine.
source: Homo sapiens (taxid: 9606)
 ID: COG0115
name: IlvE Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]
score:99.46 (hhsearch)
coverage over query:
2-48
 ID: PF01063
score: 99.50 (hhsearch)
coverage over query:
2-49
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2a1h chain A
(very confident match)
coverage over query:
2-51
psy19 494 ID: Q2T9W2 (confident match)
name: THUMP domain-containing protein 3
def:
source: Bos taurus (taxid: 9913)
 ID: COG0116
name: Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
16-469
 ID: PF01170
score: 100.00 (hhsearch)
coverage over query:
285-464
 ID: GO:0003723 (confident match)
name: RNA binding
 PDB ID: 3tma chain A
(very confident match)
coverage over query:
17-87,106-129,218-470
psy8195 192 ID: Q8K9A4 (confident match)
name: Diaminohydroxyphosphoribosylamino-pyrimidine deaminase
def:
source: Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)
 ID: COG0117
name: RibD Pyrimidine deaminase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
1-138
 ID: PF00383
score: 99.92 (hhsearch)
coverage over query:
1-96
 ID: GO:0008251 (confident match)
name: tRNA-specific adenosine deaminase activity
 PDB ID: 2g6v chain A
(very confident match)
coverage over query:
1-191
psy14502 352 ID: O84735 (confident match)
name: Riboflavin biosynthesis protein RibD
def: Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'-phosphate.
source: Chlamydia trachomatis (strain D/UW-3/Cx) (taxid: 272561)
 ID: COG0117
name: RibD Pyrimidine deaminase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
1-138
 ID: PF01872
score: 100.00 (hhsearch)
coverage over query:
143-348
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2g6v chain A
(very confident match)
coverage over query:
1-352
psy14501 352 ID: O84735 (confident match)
name: Riboflavin biosynthesis protein RibD
def: Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'-phosphate.
source: Chlamydia trachomatis (strain D/UW-3/Cx) (taxid: 272561)
 ID: COG0117
name: RibD Pyrimidine deaminase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
1-138
 ID: PF01872
score: 100.00 (hhsearch)
coverage over query:
143-348
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2g6v chain A
(very confident match)
coverage over query:
1-352
psy12516 327 ID: Q5R9E1 (confident match)
name: Hydroxymethylglutaryl-CoA lyase, mitochondrial
def: Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.
source: Pongo abelii (taxid: 9601)
 ID: COG0119
name: LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
103-326
 ID: PF00682
score: 100.00 (hhsearch)
coverage over query:
103-277
 ID: GO:0005743 (confident match)
name: mitochondrial inner membrane
 PDB ID: 1ydo chain A
(very confident match)
coverage over query:
103-309
psy10180 2211 ID: Q5RFJ3 (portable match)
name: UDP-glucuronosyltransferase 2A3
def: UDP-glucuronosyltransferases catalyze phase II biotransformation reactions in which lipophilic substrates are conjugated with glucuronic acid to increase water solubility and enhance excretion. They are of major importance in the conjugation and subsequent elimination of potentially toxic xenobiotics and endogenous compounds.
source: Pongo abelii (taxid: 9601)
 ID: COG0120
name: RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
score:99.97 (hhsearch)
coverage over query:
17-160
 ID: PF00201
score: 100.00 (hhsearch)
coverage over query:
808-1274
 ID: GO:0052696 (confident match)
name: flavonoid glucuronidation
 PDB ID: 1xtz chain A
(very confident match)
coverage over query:
17-152
psy481 166 ID: Q551C2 (confident match)
name: Ribose-5-phosphate isomerase
def:
source: Dictyostelium discoideum (taxid: 44689)
 ID: COG0120
name: RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
4-166
 ID: PF00455
score: 99.96 (hhsearch)
coverage over query:
5-132
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1xtz chain A
(very confident match)
coverage over query:
5-156
psy4725 457 ID: O70249 (confident match)
name: N-glycosylase/DNA lyase
def: DNA repair enzyme that incises DNA at 8-oxoG residues. Excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine (FAPY) from damaged DNA. Has a beta-lyase activity that nicks DNA 3' to the lesion.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0122
name: AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
78-404
 ID: PF07934
score: 99.96 (hhsearch)
coverage over query:
13-131
 ID: GO:0050896 (confident match)
name: response to stimulus
 PDB ID: 2xhi chain A
(very confident match)
coverage over query:
4-165,187-259,330-419
psy8529 436 ID: Q91WA3 (confident match)
name: Histone deacetylase 11
def: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
source: Mus musculus (taxid: 10090)
 ID: COG0123
name: AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
110-421
 ID: PF00850
score: 100.00 (hhsearch)
coverage over query:
116-415
 ID: GO:0000118 (confident match)
name: histone deacetylase complex
 PDB ID: 1c3p chain A
(very confident match)
coverage over query:
109-425
psy8530 68 ID: Q96DB2 (confident match)
name: Histone deacetylase 11
def: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
source: Homo sapiens (taxid: 9606)
 ID: COG0123
name: AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
score:98.89 (hhsearch)
coverage over query:
2-48
 ID: PF00850
score: 99.00 (hhsearch)
coverage over query:
2-50
 ID: GO:0000118 (confident match)
name: histone deacetylase complex
 PDB ID: 1zz1 chain A
(confident match)
coverage over query:
2-61
psy15137 774 ID: Q9JI44 (confident match)
name: DNA methyltransferase 1-associated protein 1
def: Involved in transcription repression and activation. Its interaction with HDAC2 may provide a mechanism for histone deacetylation in heterochromatin following replication of DNA at late firing origins. Can also repress transcription independently of histone deacetylase activity. May specifically potentiate DAXX-mediated repression of glucocorticoid receptor-dependent transcription. Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. NuA4 may also play a direct role in DNA repair when recruited to sites of DNA damage. Participates in the nuclear localization of URI1 and increases its transcriptional corepressor activity.
source: Mus musculus (taxid: 10090)
 ID: COG0123
name: AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
460-691
 ID: PF00850
score: 100.00 (hhsearch)
coverage over query:
482-687
 ID: GO:0003714 (confident match)
name: transcription corepressor activity
 PDB ID: 2pqp chain A
(very confident match)
coverage over query:
533-729
psy1924 265 ID: Q94517 (very confident match)
name: Histone deacetylase Rpd3
def: Catalyzes the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation may constitute a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. For instance, deacetylation of histone H3 may be a prerequisite for the subsequent recruitment of the histone methyltransferase Su(var)3-9 to histones. Involved in position-effect variegation (PEV).
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0123
name: AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
3-229
 ID: PF00850
score: 100.00 (hhsearch)
coverage over query:
3-230
 ID: GO:0005705 (very confident match)
name: polytene chromosome interband
 PDB ID: 3max chain A
(very confident match)
coverage over query:
25-143
psy10341 213 ID: Q6P6W3 (confident match)
name: Histone deacetylase 3
def: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. Required to repress transcription of the POU1F1 transcription factor. Acts as a molecular chaperone for shuttling phosphorylated NR2C1 to PML bodies for sumoylation.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0123
name: AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
score:99.27 (hhsearch)
coverage over query:
11-111
 ID: PF00850
score: 99.12 (hhsearch)
coverage over query:
11-89
 ID: GO:0017053 (confident match)
name: transcriptional repressor complex
 PDB ID: 4a69 chain A
(very confident match)
coverage over query:
11-151
psy8693 282 ID: Q94517 (very confident match)
name: Histone deacetylase Rpd3
def: Catalyzes the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation may constitute a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. For instance, deacetylation of histone H3 may be a prerequisite for the subsequent recruitment of the histone methyltransferase Su(var)3-9 to histones. Involved in position-effect variegation (PEV).
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0123
name: AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
1-137
 ID: PF00850
score: 100.00 (hhsearch)
coverage over query:
1-133
 ID: GO:0031523 (very confident match)
name: Myb complex
 PDB ID: 3max chain A
(very confident match)
coverage over query:
24-187
psy10342 285 ID: Q6P6W3 (confident match)
name: Histone deacetylase 3
def: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. Required to repress transcription of the POU1F1 transcription factor. Acts as a molecular chaperone for shuttling phosphorylated NR2C1 to PML bodies for sumoylation.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0123
name: AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
4-281
 ID: PF00850
score: 100.00 (hhsearch)
coverage over query:
11-280
 ID: GO:0042826 (confident match)
name: histone deacetylase binding
 PDB ID: 4a69 chain A
(very confident match)
coverage over query:
3-283
psy8282 632 ID: Q20296 (portable match)
name: Histone deacetylase 6
def: Probable histone deacetylase. Histone deacetylases are responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0123
name: AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
334-582
 ID: PF00850
score: 100.00 (hhsearch)
coverage over query:
355-577
 ID: GO:0070210 (confident match)
name: Rpd3L-Expanded complex
 PDB ID: 3men chain A
(very confident match)
coverage over query:
356-578
psy16742 620 ID: P28606 (portable match)
name: Uncharacterized protein SYNPCC7002_A1628
def: Putative deacetylase.
source: Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)
 ID: COG0123
name: AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
29-596
 ID: PF00850
score: 100.00 (hhsearch)
coverage over query:
36-595
 no hit PDB ID: 1zz1 chain A
(very confident match)
coverage over query:
29-138,256-257,287-289
,320-344,368-384
,400-484,510-511
,538-608
psy14515 586 ID: Q9UBN7 (portable match)
name: Histone deacetylase 6
def: In addition to its protein deacetylase activity, plays a key role in the degradation of misfolded proteins: when misfolded proteins are too abundant to be degraded by the chaperone refolding system and the ubiquitin-proteasome, mediates the transport of misfolded proteins to a cytoplasmic juxtanuclear structure called aggresome. Probably acts as an adapter that recognizes polyubiquitinated misfolded proteins and target them to the aggresome, facilitating their clearance by autophagy.
source: Homo sapiens (taxid: 9606)
 ID: COG0123
name: AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
1-457
 ID: PF00850
score: 100.00 (hhsearch)
coverage over query:
1-449
 no hit PDB ID: 4a69 chain A
(very confident match)
coverage over query:
1-79,107-230,358-455
psy8284 170 ID: P56523 (portable match)
name: Histone deacetylase clr3
def: Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. Required for proper positioning of nucleosomes at heterochromatic loci and for transcriptional gene silencing (TGS) function of the Snf2/Hdac-containing repressor complex (SHREC).
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0123
name: AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
score:98.26 (hhsearch)
coverage over query:
1-52
 no hit no hit PDB ID: 2pqp chain A
(very confident match)
coverage over query:
1-63,76-98
psy14271 65 ID: P34183 (confident match)
name: Histidine--tRNA ligase
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0124
name: HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:99.51 (hhsearch)
coverage over query:
6-63
 ID: PF03129
score: 99.66 (hhsearch)
coverage over query:
5-61
 ID: GO:0005737 (confident match)
name: cytoplasm
 PDB ID: 4g84 chain A
(very confident match)
coverage over query:
2-65
psy1221 690 ID: A8MPP1 (portable match)
name: Putative ATP-dependent RNA helicase DDX11-like protein 8
def: Putative DNA helicase.
source: Homo sapiens (taxid: 9606)
 ID: COG0124
name: HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:99.94 (hhsearch)
coverage over query:
8-218
 ID: PF13307
score: 99.84 (hhsearch)
coverage over query:
581-689
 ID: GO:0005737 (confident match)
name: cytoplasm
 PDB ID: 3net chain A
(very confident match)
coverage over query:
4-118,138-218
psy17090 373 ID: B2JIV0 (very confident match)
name: Histidine--tRNA ligase
def:
source: Burkholderia phymatum (strain DSM 17167 / STM815) (taxid: 391038)
 ID: COG0124
name: HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-366
 ID: PF13393
score: 100.00 (hhsearch)
coverage over query:
1-248
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 4e51 chain A
(very confident match)
coverage over query:
1-367
psy1231 151 ID: Q2KI84 (confident match)
name: Histidine--tRNA ligase, cytoplasmic
def:
source: Bos taurus (taxid: 9913)
 ID: COG0124
name: HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:99.72 (hhsearch)
coverage over query:
63-149
 ID: PF13393
score: 99.31 (hhsearch)
coverage over query:
70-146
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 4g84 chain A
(very confident match)
coverage over query:
60-145
psy13909 328 ID: Q2KI84 (confident match)
name: Histidine--tRNA ligase, cytoplasmic
def:
source: Bos taurus (taxid: 9913)
 ID: COG0124
name: HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
65-328
 ID: PF13393
score: 100.00 (hhsearch)
coverage over query:
72-278
 no hit PDB ID: 4g84 chain A
(very confident match)
coverage over query:
60-328
psy7309 454 no hit ID: COG0124
name: HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
293-453
 ID: PF13393
score: 99.97 (hhsearch)
coverage over query:
309-453
 no hit PDB ID: 4g3f chain A
(very confident match)
coverage over query:
2-58,79-118,133-144
,160-185,196-239
psy16874 227 ID: P23919 (confident match)
name: Thymidylate kinase
def: Catalyzes the conversion of dTMP to dTDP.
source: Homo sapiens (taxid: 9606)
 ID: COG0125
name: Tmk Thymidylate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
7-216
 ID: PF02223
score: 99.97 (hhsearch)
coverage over query:
13-207
 ID: GO:0009165 (confident match)
name: nucleotide biosynthetic process
 PDB ID: 3tmk chain A
(very confident match)
coverage over query:
6-97,115-224
psy16563 259 ID: A9AAR4 (portable match)
name: Probable thymidylate kinase
def:
source: Methanococcus maripaludis (strain C6 / ATCC BAA-1332) (taxid: 444158)
 ID: COG0125
name: Tmk Thymidylate kinase [Nucleotide transport and metabolism]
score:99.95 (hhsearch)
coverage over query:
60-253
 ID: PF02223
score: 99.91 (hhsearch)
coverage over query:
63-245
 no hit PDB ID: 2pbr chain A
(very confident match)
coverage over query:
59-252
psy8371 528 ID: P50310 (very confident match)
name: Phosphoglycerate kinase 1
def:
source: Cricetulus griseus (taxid: 10029)
 ID: COG0126
name: Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
4-401
 ID: PF00162
score: 100.00 (hhsearch)
coverage over query:
7-394
 ID: GO:0007268 (very confident match)
name: synaptic transmission
 PDB ID: 2wzb chain A
(very confident match)
coverage over query:
4-401
psy14448 280 ID: A5WVX0 (confident match)
name: Inosine triphosphate pyrophosphatase
def: Pyrophosphatase that hydrolyzes the non-canonical purine nucleotides inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) as well as 2'-deoxy-N-6-hydroxylaminopurine triposphate (dHAPTP) and xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions.
source: Danio rerio (taxid: 7955)
 ID: COG0127
name: Xanthosine triphosphate pyrophosphatase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
86-268
 ID: PF01725
score: 100.00 (hhsearch)
coverage over query:
88-265
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2car chain A
(very confident match)
coverage over query:
86-268
psy14444 441 ID: Q4WTN9 (confident match)
name: Inosine triphosphate pyrophosphatase
def: Pyrophosphatase that hydrolyzes non-canonical purine nucleotides such as inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) or xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions.
source: Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)
 ID: COG0127
name: Xanthosine triphosphate pyrophosphatase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
123-317
 ID: PF01725
score: 100.00 (hhsearch)
coverage over query:
124-314
 ID: GO:0047840 (confident match)
name: dCTP diphosphatase activity
 PDB ID: 2car chain A
(very confident match)
coverage over query:
182-319
psy1178 144 ID: O44081 (confident match)
name: H/ACA ribonucleoprotein complex subunit 4
def: Plays a central role in ribosomal RNA processing. Probable catalytic subunit of H/ACA small nucleolar ribonucleoprotein (H/ACA snoRNP) complex, which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ('psi') residues may serve to stabilize the conformation of rRNAs. Required for maintenance of the germline stem cell lineage during spermatogenesis.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0130
name: TruB Pseudouridine synthase [Translation, ribosomal structure and biogenesis]
score:99.65 (hhsearch)
coverage over query:
1-129
 ID: PF01472
score: 99.56 (hhsearch)
coverage over query:
55-128
 ID: GO:0015030 (confident match)
name: Cajal body
 PDB ID: 3u28 chain A
(very confident match)
coverage over query:
1-144
psy1176 232 ID: O44081 (confident match)
name: H/ACA ribonucleoprotein complex subunit 4
def: Plays a central role in ribosomal RNA processing. Probable catalytic subunit of H/ACA small nucleolar ribonucleoprotein (H/ACA snoRNP) complex, which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ('psi') residues may serve to stabilize the conformation of rRNAs. Required for maintenance of the germline stem cell lineage during spermatogenesis.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0130
name: TruB Pseudouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
19-223
 ID: PF01509
score: 100.00 (hhsearch)
coverage over query:
53-179
 ID: GO:0005730 (confident match)
name: nucleolus
 PDB ID: 3u28 chain A
(very confident match)
coverage over query:
1-222
psy4559 336 ID: Q5XFW2 (portable match)
name: Probable tRNA pseudouridine synthase 2
def: May be responsible for synthesis of pseudouridine from uracil in transfer RNAs.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0130
name: TruB Pseudouridine synthase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
71-321
 ID: PF01509
score: 100.00 (hhsearch)
coverage over query:
71-245
 no hit PDB ID: 1r3e chain A
(very confident match)
coverage over query:
56-134,150-319
psy14904 233 ID: B5YHS9 (confident match)
name: ATP-dependent dethiobiotin synthetase BioD
def: Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring.
source: Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) (taxid: 289376)
 ID: COG0132
name: BioD Dethiobiotin synthetase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
5-230
 ID: PF13500
score: 100.00 (hhsearch)
coverage over query:
7-222
 no hit PDB ID: 3of5 chain A
(very confident match)
coverage over query:
5-229
psy11239 410 ID: Q72U05 (confident match)
name: Tryptophan synthase beta chain
def: The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.
source: Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) (taxid: 267671)
 ID: COG0133
name: TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
195-407
 ID: PF00291
score: 99.97 (hhsearch)
coverage over query:
197-402
 ID: GO:0004834 (confident match)
name: tryptophan synthase activity
 PDB ID: 1v8z chain A
(very confident match)
coverage over query:
196-401
psy2261 857 ID: P31335 (confident match)
name: Bifunctional purine biosynthesis protein PURH
def: Bifunctional enzyme that catalyzes 2 steps in purine biosynthesis.
source: Gallus gallus (taxid: 9031)
 ID: COG0138
name: PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
6-857
 ID: PF01808
score: 100.00 (hhsearch)
coverage over query:
137-726
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1g8m chain A
(very confident match)
coverage over query:
325-491
psy8475 233 ID: P54113 (confident match)
name: Bifunctional purine biosynthesis protein ADE16
def:
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0138
name: PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
57-233
 ID: PF01808
score: 99.96 (hhsearch)
coverage over query:
59-141
 no hit PDB ID: 1g8m chain A
(very confident match)
coverage over query:
59-233
psy11203 438 ID: Q5U2R1 (confident match)
name: Decaprenyl-diphosphate synthase subunit 2
def: Supplies decaprenyl diphosphate, the precursor for the side chain of the isoprenoid quinones ubiquinone-10.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0142
name: IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
86-437
 ID: PF00348
score: 100.00 (hhsearch)
coverage over query:
111-405
 ID: GO:0000010 (confident match)
name: trans-hexaprenyltranstransferase activity
 PDB ID: 3apz chain A
(very confident match)
coverage over query:
89-252,281-437
psy3877 145 ID: Q9WTN0 (confident match)
name: Geranylgeranyl pyrophosphate synthase
def: Catalyzes the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate, an important precursor of carotenoids and geranylated proteins.
source: Mus musculus (taxid: 10090)
 ID: COG0142
name: IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
score:99.95 (hhsearch)
coverage over query:
3-142
 ID: PF00348
score: 99.83 (hhsearch)
coverage over query:
2-108
 ID: GO:0004311 (confident match)
name: farnesyltranstransferase activity
 PDB ID: 2q80 chain A
(very confident match)
coverage over query:
2-143
psy3879 247 ID: Q9WTN0 (confident match)
name: Geranylgeranyl pyrophosphate synthase
def: Catalyzes the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate, an important precursor of carotenoids and geranylated proteins.
source: Mus musculus (taxid: 10090)
 ID: COG0142
name: IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
9-185
 ID: PF00348
score: 100.00 (hhsearch)
coverage over query:
15-201
 ID: GO:0004311 (confident match)
name: farnesyltranstransferase activity
 PDB ID: 2q80 chain A
(very confident match)
coverage over query:
8-201
psy5532 168 ID: Q53479 (portable match)
name: Short chain isoprenyl diphosphate synthase
def:
source: Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) (taxid: 79929)
 ID: COG0142
name: IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
score:99.97 (hhsearch)
coverage over query:
2-123
 ID: PF00348
score: 99.95 (hhsearch)
coverage over query:
2-167
 ID: GO:0004659 (confident match)
name: prenyltransferase activity
 PDB ID: 3pko chain A
(very confident match)
coverage over query:
2-122
psy9101 255 ID: P08524 (confident match)
name: Farnesyl pyrophosphate synthase
def: Catalyzes the sequential condensation of isopentenyl pyrophosphate with the allylic pyrophosphates, dimethylallyl pyrophosphate, and then with the resultant geranylpyrophosphate to the ultimate product farnesyl pyrophosphate.
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0142
name: IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
68-249
 ID: PF00348
score: 100.00 (hhsearch)
coverage over query:
88-254
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2qis chain A
(very confident match)
coverage over query:
30-66,88-254
psy17022 287 ID: P18900 (portable match)
name: Hexaprenyl pyrophosphate synthase, mitochondrial
def: Assembly of polyisoprenoid side chains. The polyprenyl synthase of coenzyme Q biosynthesis catalyzes the formation from isopentenyl diphosphate of all trans-polyprenyl pyrophosphates generally ranging in length of between 6 and 10 isoprene units depending on the species.
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0142
name: IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
1-287
 ID: PF00348
score: 99.96 (hhsearch)
coverage over query:
1-285
 ID: GO:0046982 (confident match)
name: protein heterodimerization activity
 PDB ID: 3apz chain A
(very confident match)
coverage over query:
1-46,91-154,220-287
psy5533 136 ID: Q5T2R2 (confident match)
name: Decaprenyl-diphosphate synthase subunit 1
def: Supplies decaprenyl diphosphate, the precursor for the side chain of the isoprenoid quinones ubiquinone-10.
source: Homo sapiens (taxid: 9606)
 ID: COG0142
name: IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
score:99.97 (hhsearch)
coverage over query:
1-136
 ID: PF00348
score: 99.86 (hhsearch)
coverage over query:
1-101
 ID: GO:0046982 (confident match)
name: protein heterodimerization activity
 PDB ID: 3pko chain A
(very confident match)
coverage over query:
1-136
psy3887 250 ID: Q12051 (portable match)
name: Geranylgeranyl pyrophosphate synthase
def: Catalyzes the trans-addition of the 3 molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate. Required for the membrane attachment of YPT1 and SEC4. May be involved in vesicle trafficking and protein sorting.
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0142
name: IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
44-241
 ID: PF00348
score: 99.97 (hhsearch)
coverage over query:
63-239
 no hit PDB ID: 2q80 chain A
(very confident match)
coverage over query:
57-117,131-241
psy4049 528 ID: Q9ZCP0 (confident match)
name: Methionine--tRNA ligase
def: Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
source: Rickettsia prowazekii (strain Madrid E) (taxid: 272947)
 ID: COG0143
name: MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
3-506
 ID: PF09334
score: 100.00 (hhsearch)
coverage over query:
6-383
 ID: GO:0004825 (confident match)
name: methionine-tRNA ligase activity
 PDB ID: 2csx chain A
(very confident match)
coverage over query:
3-145,169-394,408-513
psy14678 129 ID: A1K4R7 (confident match)
name: Isoleucine--tRNA ligase
def: Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).
source: Azoarcus sp. (strain BH72) (taxid: 62928)
 ID: COG0143
name: MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:99.93 (hhsearch)
coverage over query:
37-127
 ID: PF09334
score: 99.92 (hhsearch)
coverage over query:
41-127
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 1rqg chain A
(very confident match)
coverage over query:
39-127
psy2393 576 ID: B1XWM2 (very confident match)
name: Methionine--tRNA ligase
def: Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
source: Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (taxid: 395495)
 ID: COG0143
name: MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-575
 ID: PF09334
score: 100.00 (hhsearch)
coverage over query:
14-421
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3h99 chain A
(very confident match)
coverage over query:
8-575
psy7269 235 no hit ID: COG0143
name: MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-213
 ID: PF09334
score: 100.00 (hhsearch)
coverage over query:
1-197
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3h99 chain A
(very confident match)
coverage over query:
1-209
psy7266 1175 no hit ID: COG0143
name: MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
280-823
 ID: PF09334
score: 100.00 (hhsearch)
coverage over query:
283-662
 ID: GO:0005875 (confident match)
name: microtubule associated complex
 PDB ID: 3h99 chain A
(very confident match)
coverage over query:
276-821
psy7914 365 ID: B7KCI7 (confident match)
name: Leucine--tRNA ligase
def:
source: Cyanothece sp. (strain PCC 7424) (taxid: 65393)
 ID: COG0143
name: MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
185-363
 ID: PF09334
score: 100.00 (hhsearch)
coverage over query:
188-362
 ID: GO:0016070 (confident match)
name: RNA metabolic process
 PDB ID: 2v0c chain A
(very confident match)
coverage over query:
184-360
psy2399 232 ID: Q474X7 (confident match)
name: Methionine--tRNA ligase
def: Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
source: Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198)
 ID: COG0143
name: MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-229
 ID: PF09334
score: 100.00 (hhsearch)
coverage over query:
14-220
 no hit PDB ID: 1wz2 chain A
(very confident match)
coverage over query:
12-156
psy17365 646 ID: O13935 (confident match)
name: Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b
def: Methylates cytosine to m5C at several positions in different tRNAs and pre-tRNAs containing intron.
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0144
name: Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
48-427
 ID: PF01189
score: 100.00 (hhsearch)
coverage over query:
65-427
 ID: GO:0000003 (confident match)
name: reproduction
 PDB ID: 1ixk chain A
(very confident match)
coverage over query:
60-99,115-143,155-250
,261-369,395-427
psy11559 189 ID: P40991 (confident match)
name: Putative ribosomal RNA methyltransferase Nop2
def: Required for 60S ribosomal subunit synthesis. May act as ribosomal RNA methyltransferase.
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0144
name: Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-182
 ID: PF01189
score: 100.00 (hhsearch)
coverage over query:
3-184
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1ixk chain A
(very confident match)
coverage over query:
2-183
psy7376 180 ID: P40991 (portable match)
name: Putative ribosomal RNA methyltransferase Nop2
def: Required for 60S ribosomal subunit synthesis. May act as ribosomal RNA methyltransferase.
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0144
name: Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
score:99.89 (hhsearch)
coverage over query:
13-180
 ID: PF01189
score: 99.56 (hhsearch)
coverage over query:
87-180
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1ixk chain A
(very confident match)
coverage over query:
56-179
psy7378 90 ID: P40991 (confident match)
name: Putative ribosomal RNA methyltransferase Nop2
def: Required for 60S ribosomal subunit synthesis. May act as ribosomal RNA methyltransferase.
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0144
name: Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
score:99.77 (hhsearch)
coverage over query:
12-74
 ID: PF01189
score: 99.70 (hhsearch)
coverage over query:
13-75
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3m6w chain A
(very confident match)
coverage over query:
13-75
psy17793 397 ID: B7USL2 (portable match)
name: Ribosomal RNA small subunit methyltransferase F
def: Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.
source: Escherichia coli O127:H6 (strain E2348/69 / EPEC) (taxid: 574521)
 ID: COG0144
name: Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
44-312
 ID: PF01189
score: 100.00 (hhsearch)
coverage over query:
62-310
 ID: GO:0030488 (confident match)
name: tRNA methylation
 PDB ID: 3m6w chain A
(very confident match)
coverage over query:
62-149,160-210,222-314
psy7769 355 ID: Q0V8R7 (confident match)
name: 5-methylcytosine rRNA methyltransferase NSUN4
def: May have S-adenosyl-L-methionine-dependent methyl-transferase activity.
source: Bos taurus (taxid: 9913)
 ID: COG0144
name: Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
74-355
 ID: PF01189
score: 100.00 (hhsearch)
coverage over query:
74-352
 no hit PDB ID: 1ixk chain A
(very confident match)
coverage over query:
73-354
psy15213 139 ID: Q7MGK4 (portable match)
name: Ribosomal RNA small subunit methyltransferase B
def: Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
source: Vibrio vulnificus (strain YJ016) (taxid: 196600)
 ID: COG0144
name: Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
11-138
 ID: PF01189
score: 100.00 (hhsearch)
coverage over query:
13-135
 no hit PDB ID: 3m6w chain A
(very confident match)
coverage over query:
24-138
psy15212 329 ID: Q7MGK4 (confident match)
name: Ribosomal RNA small subunit methyltransferase B
def: Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
source: Vibrio vulnificus (strain YJ016) (taxid: 196600)
 ID: COG0144
name: Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-328
 ID: PF01189
score: 100.00 (hhsearch)
coverage over query:
52-325
 no hit PDB ID: 1ixk chain A
(very confident match)
coverage over query:
23-193,210-327
psy12816 1453 ID: Q54NW6 (portable match)
name: 5-oxoprolinase
def: Catalyzes the cleavage of 5-oxo-L-proline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
source: Dictyostelium discoideum (taxid: 44689)
 ID: COG0145
name: HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
5-662
 ID: PF02538
score: 100.00 (hhsearch)
coverage over query:
1213-1453
 no hit PDB ID: 3cet chain A
(confident match)
coverage over query:
86-219,234-319
psy2548 207 ID: Q54NW6 (confident match)
name: 5-oxoprolinase
def: Catalyzes the cleavage of 5-oxo-L-proline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
source: Dictyostelium discoideum (taxid: 44689)
 ID: COG0146
name: HyuB N-methylhydantoinase B/acetone carboxylase, alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
1-203
 ID: PF02538
score: 100.00 (hhsearch)
coverage over query:
2-204
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1vt4 chain I
(portable match)
coverage over query:
1-192
psy2555 90 ID: Q8K010 (confident match)
name: 5-oxoprolinase
def: Catalyzes the cleavage of 5-oxo-L-proline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
source: Mus musculus (taxid: 10090)
 ID: COG0146
name: HyuB N-methylhydantoinase B/acetone carboxylase, alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:99.97 (hhsearch)
coverage over query:
3-90
 ID: PF02538
score: 99.97 (hhsearch)
coverage over query:
2-90
 ID: GO:0005829 (confident match)
name: cytosol
 no hit
psy12655 299 ID: P06733 (very confident match)
name: Alpha-enolase
def: MBP1 binds to the myc promoter and acts as a transcriptional repressor. May be a tumor suppressor.
source: Homo sapiens (taxid: 9606)
 ID: COG0148
name: Eno Enolase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-299
 ID: PF00113
score: 100.00 (hhsearch)
coverage over query:
143-299
 ID: GO:0046982 (very confident match)
name: protein heterodimerization activity
 PDB ID: 3qtp chain A
(very confident match)
coverage over query:
1-299
psy12654 133 ID: P17183 (confident match)
name: Gamma-enolase
def: Has neurotrophic and neuroprotective properties on a broad spectrum of central nervous system (CNS) neurons. Binds, in a calcium-dependent manner, to cultured neocortical neurons and promotes cell survival.
source: Mus musculus (taxid: 10090)
 ID: COG0148
name: Eno Enolase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
4-128
 ID: PF00113
score: 100.00 (hhsearch)
coverage over query:
3-132
 ID: GO:0046982 (very confident match)
name: protein heterodimerization activity
 PDB ID: 3otr chain A
(very confident match)
coverage over query:
3-133
psy5700 315 ID: P06733 (confident match)
name: Alpha-enolase
def: MBP1 binds to the myc promoter and acts as a transcriptional repressor. May be a tumor suppressor.
source: Homo sapiens (taxid: 9606)
 ID: COG0148
name: Eno Enolase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-222
 ID: PF03952
score: 100.00 (hhsearch)
coverage over query:
2-134
 ID: GO:0046982 (confident match)
name: protein heterodimerization activity
 PDB ID: 2al1 chain A
(very confident match)
coverage over query:
2-210
psy15211 68 ID: Q39EV9 (confident match)
name: Enolase
def: Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.
source: Burkholderia sp. (strain 383) (taxid: 269483)
 ID: COG0148
name: Eno Enolase [Carbohydrate transport and metabolism]
score:99.93 (hhsearch)
coverage over query:
2-68
 ID: PF03952
score: 99.96 (hhsearch)
coverage over query:
2-68
 ID: GO:0046982 (confident match)
name: protein heterodimerization activity
 PDB ID: 3otr chain A
(very confident match)
coverage over query:
2-68
psy9117 61 no hit ID: COG0148
name: Eno Enolase [Carbohydrate transport and metabolism]
score:99.91 (hhsearch)
coverage over query:
2-61
 ID: PF03952
score: 99.94 (hhsearch)
coverage over query:
2-61
 ID: GO:0046982 (confident match)
name: protein heterodimerization activity
 no hit
psy7461 149 ID: Q6FRI3 (confident match)
name: Triosephosphate isomerase
def:
source: Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)
 ID: COG0149
name: TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-148
 ID: PF00121
score: 100.00 (hhsearch)
coverage over query:
5-148
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 1mo0 chain A
(very confident match)
coverage over query:
2-148
psy246 615 ID: P38024 (confident match)
name: Multifunctional protein ADE2
def:
source: Gallus gallus (taxid: 9031)
 ID: COG0152
name: PurC Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
11-435
 ID: PF01259
score: 100.00 (hhsearch)
coverage over query:
13-434
 no hit PDB ID: 2h31 chain A
(very confident match)
coverage over query:
7-71,137-139,161-163
,189-319,375-491
,503-610
psy9976 349 ID: P51570 (confident match)
name: Galactokinase
def: Major enzyme for galactose metabolism.
source: Homo sapiens (taxid: 9606)
 ID: COG0153
name: GalK Galactokinase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
10-346
 ID: PF00288
score: 99.66 (hhsearch)
coverage over query:
99-168
 ID: GO:0004335 (confident match)
name: galactokinase activity
 PDB ID: 1wuu chain A
(very confident match)
coverage over query:
8-345
psy8462 271 ID: A7NI09 (portable match)
name: Galactokinase
def:
source: Roseiflexus castenholzii (strain DSM 13941 / HLO8) (taxid: 383372)
 ID: COG0153
name: GalK Galactokinase [Carbohydrate transport and metabolism]
score:99.88 (hhsearch)
coverage over query:
136-261
 ID: PF08149
score: 99.97 (hhsearch)
coverage over query:
18-70
 no hit PDB ID: 1pie chain A
(very confident match)
coverage over query:
172-264
psy7887 315 ID: Q5R6J8 (portable match)
name: N-acetylgalactosamine kinase
def: Acts on GalNAc. Also acts as a galactokinase when galactose is present at high concentrations.
source: Pongo abelii (taxid: 9601)
 ID: COG0153
name: GalK Galactokinase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
138-301
 ID: PF08544
score: 99.50 (hhsearch)
coverage over query:
201-277
 ID: GO:0044424 (confident match)
name: intracellular part
 PDB ID: 2a2c chain A
(very confident match)
coverage over query:
21-100,163-302
psy7890 196 ID: Q9SEE5 (portable match)
name: Galactokinase
def: Sugar-1-kinase with a very high substrate specificity for the alpha-anomeric configuration of D-galacose (D-Gal). Converts also efficiently 2-deoxy-D-Gal to 2-deoxy-D-al-1-phosphate.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0153
name: GalK Galactokinase [Carbohydrate transport and metabolism]
score:99.96 (hhsearch)
coverage over query:
37-168
 ID: PF08544
score: 99.31 (hhsearch)
coverage over query:
74-144
 no hit PDB ID: 2cz9 chain A
(very confident match)
coverage over query:
55-167
psy7885 79 ID: Q5R6J8 (confident match)
name: N-acetylgalactosamine kinase
def: Acts on GalNAc. Also acts as a galactokinase when galactose is present at high concentrations.
source: Pongo abelii (taxid: 9601)
 ID: COG0153
name: GalK Galactokinase [Carbohydrate transport and metabolism]
score:99.86 (hhsearch)
coverage over query:
15-69
 ID: PF10509
score: 99.90 (hhsearch)
coverage over query:
15-53
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 2a2c chain A
(very confident match)
coverage over query:
3-76
psy7886 115 ID: Q5R6J8 (confident match)
name: N-acetylgalactosamine kinase
def: Acts on GalNAc. Also acts as a galactokinase when galactose is present at high concentrations.
source: Pongo abelii (taxid: 9601)
 ID: COG0153
name: GalK Galactokinase [Carbohydrate transport and metabolism]
score:99.93 (hhsearch)
coverage over query:
1-76
 no hit ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2a2c chain A
(very confident match)
coverage over query:
3-74
psy15609 567 ID: Q6DH69 (confident match)
name: Fatty-acid amide hydrolase 2-A
def:
source: Danio rerio (taxid: 7955)
 ID: COG0154
name: GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
68-563
 ID: PF01425
score: 100.00 (hhsearch)
coverage over query:
90-544
 ID: GO:0005811 (confident match)
name: lipid particle
 PDB ID: 3kfu chain E
(very confident match)
coverage over query:
72-99,122-149,160-564
psy7558 508 ID: Q6DH69 (confident match)
name: Fatty-acid amide hydrolase 2-A
def:
source: Danio rerio (taxid: 7955)
 ID: COG0154
name: GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
64-508
 ID: PF01425
score: 100.00 (hhsearch)
coverage over query:
86-508
 ID: GO:0005811 (confident match)
name: lipid particle
 PDB ID: 3kfu chain E
(very confident match)
coverage over query:
68-508
psy178 84 ID: P97612 (portable match)
name: Fatty-acid amide hydrolase 1
def: Degrades bioactive fatty acid amides like oleamide, the endogenous cannabinoid, anandamide and myristic amide to their corresponding acids, thereby serving to terminate the signaling functions of these molecules. Hydrolyzes polyunsaturated substrate anandamide preferentially as compared to monounsaturated substrates.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0154
name: GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-84
 ID: PF01425
score: 100.00 (hhsearch)
coverage over query:
1-84
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2dc0 chain A
(very confident match)
coverage over query:
1-84
psy5206 407 ID: Q6DH69 (confident match)
name: Fatty-acid amide hydrolase 2-A
def:
source: Danio rerio (taxid: 7955)
 ID: COG0154
name: GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
64-390
 ID: PF01425
score: 100.00 (hhsearch)
coverage over query:
86-395
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3kfu chain E
(very confident match)
coverage over query:
68-307,322-395
psy15831 304 ID: O28325 (portable match)
name: Putative amidase AF_1954
def:
source: Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)
 ID: COG0154
name: GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-295
 ID: PF01425
score: 100.00 (hhsearch)
coverage over query:
2-279
 ID: GO:0044444 (confident match)
name: cytoplasmic part
 PDB ID: 3kfu chain E
(very confident match)
coverage over query:
2-23,38-279
psy7560 507 ID: Q6DH69 (confident match)
name: Fatty-acid amide hydrolase 2-A
def:
source: Danio rerio (taxid: 7955)
 ID: COG0154
name: GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
183-486
 ID: PF01425
score: 100.00 (hhsearch)
coverage over query:
205-502
 ID: GO:0044444 (confident match)
name: cytoplasmic part
 PDB ID: 3kfu chain E
(very confident match)
coverage over query:
187-498
psy10133 342 ID: Q29BT3 (confident match)
name: Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial
def: Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
source: Drosophila pseudoobscura pseudoobscura (taxid: 46245)
 ID: COG0154
name: GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
11-338
 ID: PF01425
score: 100.00 (hhsearch)
coverage over query:
12-322
 ID: GO:0050567 (confident match)
name: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
 PDB ID: 3kfu chain E
(very confident match)
coverage over query:
12-339
psy10129 135 ID: B6IZ25 (confident match)
name: Glutamyl-tRNA(Gln) amidotransferase subunit A
def: Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
source: Coxiella burnetii (strain CbuG_Q212) (taxid: 434923)
 ID: COG0154
name: GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-133
 ID: PF01425
score: 100.00 (hhsearch)
coverage over query:
14-133
 ID: GO:1901564 (confident match)
name: organonitrogen compound metabolic process
 PDB ID: 3h0l chain A
(very confident match)
coverage over query:
1-133
psy170 84 ID: P59385 (portable match)
name: Indoleacetamide hydrolase
def: Hydrolyzes indole-3-acetamide (IAM) into indole-3-acetic acid (IAA).
source: Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)
 ID: COG0154
name: GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
score:99.79 (hhsearch)
coverage over query:
2-83
 ID: PF01425
score: 99.81 (hhsearch)
coverage over query:
9-83
 no hit PDB ID: 3kfu chain E
(very confident match)
coverage over query:
2-45,60-83
psy8288 177 ID: Q05AM4 (portable match)
name: Fatty-acid amide hydrolase 2-B
def:
source: Danio rerio (taxid: 7955)
 ID: COG0154
name: GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
score:99.81 (hhsearch)
coverage over query:
15-177
 ID: PF01425
score: 99.76 (hhsearch)
coverage over query:
89-177
 no hit PDB ID: 3ip4 chain A
(confident match)
coverage over query:
88-176
psy2056 220 ID: Q6DH69 (portable match)
name: Fatty-acid amide hydrolase 2-A
def:
source: Danio rerio (taxid: 7955)
 ID: COG0154
name: GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
score:99.48 (hhsearch)
coverage over query:
124-215
 ID: PF01425
score: 99.39 (hhsearch)
coverage over query:
146-214
 no hit PDB ID: 3ip4 chain A
(confident match)
coverage over query:
124-215
psy1969 256 ID: Q6DH69 (portable match)
name: Fatty-acid amide hydrolase 2-A
def:
source: Danio rerio (taxid: 7955)
 ID: COG0154
name: GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
score:99.69 (hhsearch)
coverage over query:
46-243
 ID: PF01425
score: 99.40 (hhsearch)
coverage over query:
65-141
 no hit PDB ID: 3a1k chain A
(very confident match)
coverage over query:
69-141,219-246
psy179 359 ID: Q6DH69 (portable match)
name: Fatty-acid amide hydrolase 2-A
def:
source: Danio rerio (taxid: 7955)
 ID: COG0154
name: GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
score:99.68 (hhsearch)
coverage over query:
75-346
 ID: PF01425
score: 99.57 (hhsearch)
coverage over query:
74-244
 no hit PDB ID: 1m22 chain A
(very confident match)
coverage over query:
158-244,322-349
psy3753 928 ID: Q9JUD5 (confident match)
name: Phosphoadenosine phosphosulfate reductase
def: Reduction of activated sulfate into sulfite.
source: Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587)
 ID: COG0155
name: CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-540
 ID: PF01507
score: 100.00 (hhsearch)
coverage over query:
712-888
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1zj8 chain A
(very confident match)
coverage over query:
7-277,295-302,319-544
psy16848 514 ID: Q63147 (confident match)
name: 5-aminolevulinate synthase, erythroid-specific, mitochondrial
def:
source: Rattus norvegicus (taxid: 10116)
 ID: COG0156
name: BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
16-477
 ID: PF00155
score: 99.96 (hhsearch)
coverage over query:
19-474
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2bwn chain A
(very confident match)
coverage over query:
16-142,255-481
psy16850 174 ID: P38092 (confident match)
name: 5-aminolevulinate synthase, mitochondrial
def:
source: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)
 ID: COG0156
name: BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
9-164
 ID: PF00155
score: 98.82 (hhsearch)
coverage over query:
53-166
 ID: GO:0006783 (confident match)
name: heme biosynthetic process
 PDB ID: 2bwn chain A
(very confident match)
coverage over query:
11-137
psy5049 153 ID: O54694 (portable match)
name: Serine palmitoyltransferase 2
def: Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1/SPTLC1 constitutes the catalytic core. The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference. The SPTLC1-SPTLC2-SSSPTA complex shows a strong preference for C16-CoA substrate, while the SPTLC1-SPTLC2-SSSPTB complex displays a preference for C18-CoA substrate.
source: Cricetulus griseus (taxid: 10029)
 ID: COG0156
name: BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
score:99.84 (hhsearch)
coverage over query:
12-133
 ID: PF00155
score: 97.13 (hhsearch)
coverage over query:
45-127
 no hit PDB ID: 1fc4 chain A
(confident match)
coverage over query:
46-136
psy15447 457 ID: O54695 (confident match)
name: Serine palmitoyltransferase 1
def: Serine palmitoyltransferase (SPT). The heterodimer formed with SPTLC2 or SPTLC3 constitutes the catalytic core. The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference. The SPTLC1-SPTLC2-SPTSSA complex shows a strong preference for C16-CoA substrate, while the SPTLC1-SPTLC3-SPTSSA isozyme uses both C14-CoA and C16-CoA as substrates. The SPTLC1-SPTLC2-SPTSSB complex displays a strong preference for C18-CoA substrate, while the SPTLC1-SPTLC3-SPTSSB isozyme has the ability to use a broader range of acyl-CoAs.
source: Cricetulus griseus (taxid: 10029)
 ID: COG0156
name: BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
67-447
 ID: PF00202
score: 100.00 (hhsearch)
coverage over query:
66-381
 ID: GO:0035339 (confident match)
name: SPOTS complex
 PDB ID: 2w8t chain A
(very confident match)
coverage over query:
36-454
psy2206 430 ID: Q9XVI6 (confident match)
name: Serine palmitoyltransferase 3
def: Component of the serine palmitoyltransferase (SPT) that catalyzes the first committed step in sphingolipid biosynthesis, which is the condensation of an acyl-CoA species and L-serine. The catalytic core is composed of a heterodimer of sptl-1 and sptl-2 or sptl-1 and sptl-3 (By similarity). Required for the specification of abicobasal polarity and development of the gut lumen.
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0156
name: BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
179-428
 ID: PF00202
score: 99.67 (hhsearch)
coverage over query:
296-428
 no hit PDB ID: 2w8t chain A
(very confident match)
coverage over query:
178-215,229-416
psy2211 100 ID: Q9XVI6 (confident match)
name: Serine palmitoyltransferase 3
def: Component of the serine palmitoyltransferase (SPT) that catalyzes the first committed step in sphingolipid biosynthesis, which is the condensation of an acyl-CoA species and L-serine. The catalytic core is composed of a heterodimer of sptl-1 and sptl-2 or sptl-1 and sptl-3 (By similarity). Required for the specification of abicobasal polarity and development of the gut lumen.
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0156
name: BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
score:99.56 (hhsearch)
coverage over query:
8-98
 no hit ID: GO:0017059 (confident match)
name: serine C-palmitoyltransferase complex
 PDB ID: 2w8t chain A
(confident match)
coverage over query:
23-41,55-98
psy7455 400 ID: Q9Z1N1 (confident match)
name: Fructose-1,6-bisphosphatase isozyme 2
def:
source: Rattus norvegicus (taxid: 10116)
 ID: COG0158
name: Fbp Fructose-1,6-bisphosphatase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
11-356
 ID: PF00316
score: 100.00 (hhsearch)
coverage over query:
12-355
 ID: GO:0015976 (confident match)
name: carbon utilization
 PDB ID: 2gq1 chain A
(very confident match)
coverage over query:
12-165,212-356
psy7457 497 ID: Q9N0J6 (portable match)
name: Fructose-1,6-bisphosphatase isozyme 2
def:
source: Oryctolagus cuniculus (taxid: 9986)
 ID: COG0158
name: Fbp Fructose-1,6-bisphosphatase [Carbohydrate transport and metabolism]
score:99.57 (hhsearch)
coverage over query:
405-496
 ID: PF00316
score: 99.51 (hhsearch)
coverage over query:
406-496
 no hit PDB ID: 2fhy chain A
(very confident match)
coverage over query:
385-496
psy13322 195 ID: Q3UEG6 (confident match)
name: Alanine--glyoxylate aminotransferase 2, mitochondrial
def:
source: Mus musculus (taxid: 10090)
 ID: COG0160
name: GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-195
 ID: PF00202
score: 100.00 (hhsearch)
coverage over query:
37-195
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3i5t chain A
(very confident match)
coverage over query:
34-195
psy1628 114 ID: Q7SY54 (confident match)
name: Ethanolamine-phosphate phospho-lyase
def:
source: Danio rerio (taxid: 7955)
 ID: COG0160
name: GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
score:99.97 (hhsearch)
coverage over query:
17-114
 ID: PF00202
score: 99.94 (hhsearch)
coverage over query:
40-114
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 4ffc chain A
(very confident match)
coverage over query:
40-114
psy6205 224 ID: Q8TBG4 (confident match)
name: Ethanolamine-phosphate phospho-lyase
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0160
name: GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
38-223
 ID: PF00202
score: 100.00 (hhsearch)
coverage over query:
70-223
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3ruy chain A
(very confident match)
coverage over query:
90-223
psy237 236 ID: Q21217 (confident match)
name: Probable 4-aminobutyrate aminotransferase, mitochondrial
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0160
name: GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
score:99.89 (hhsearch)
coverage over query:
50-204
 ID: PF00202
score: 99.62 (hhsearch)
coverage over query:
85-186
 ID: GO:0044444 (confident match)
name: cytoplasmic part
 PDB ID: 1ohv chain A
(very confident match)
coverage over query:
53-157
psy4805 159 ID: P17649 (confident match)
name: 4-aminobutyrate aminotransferase
def: Required for the degradation of gamma-aminobutyric acid (GABA), which is important for utilization of GABA as nitrogen source and for oxidative stress tolerance. Deaminates GABA to succinate semialdehyde, which in turn is converted to succinate by the succinate-semialdehyde dehydrogenase UGA2. Cannot transaminate beta-alanine (BAL).
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0160
name: GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-159
 ID: PF00202
score: 99.95 (hhsearch)
coverage over query:
1-159
 ID: GO:0045471 (confident match)
name: response to ethanol
 PDB ID: 1ohv chain A
(very confident match)
coverage over query:
1-159
psy11784 284 ID: B7NJT8 (portable match)
name: Putrescine aminotransferase
def: Catalyzes the aminotransferase reaction from putrescine to 2-oxoglutarate, leading to glutamate and 4-aminobutanal, which spontaneously cyclizes to form 1-pyrroline. Is also able to transaminate cadaverine and, in lower extent, spermidine, but not ornithine.
source: Escherichia coli O7:K1 (strain IAI39 / ExPEC) (taxid: 585057)
 ID: COG0160
name: GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-268
 ID: PF00202
score: 100.00 (hhsearch)
coverage over query:
1-211
 ID: GO:1901606 (confident match)
name: alpha-amino acid catabolic process
 PDB ID: 3ruy chain A
(very confident match)
coverage over query:
1-265
psy7882 329 ID: Q3UEG6 (portable match)
name: Alanine--glyoxylate aminotransferase 2, mitochondrial
def:
source: Mus musculus (taxid: 10090)
 ID: COG0160
name: GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
3-197
 ID: PF00202
score: 99.96 (hhsearch)
coverage over query:
5-136
 no hit PDB ID: 3n5m chain A
(very confident match)
coverage over query:
4-197
psy8199 965 ID: A1VUJ4 (confident match)
name: Biotin synthase
def: Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism.
source: Polaromonas naphthalenivorans (strain CJ2) (taxid: 365044)
 ID: COG0161
name: BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
221-647
 ID: PF00202
score: 100.00 (hhsearch)
coverage over query:
246-589
 ID: GO:0044464 (confident match)
name: cell part
 PDB ID: 1v9f chain A
(very confident match)
coverage over query:
2-237
psy938 241 ID: Q9W107 (confident match)
name: Probable tyrosine--tRNA ligase, mitochondrial
def: Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0162
name: TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-215
 ID: PF00579
score: 99.52 (hhsearch)
coverage over query:
4-115
 ID: GO:0044444 (confident match)
name: cytoplasmic part
 PDB ID: 2jan chain A
(very confident match)
coverage over query:
3-216
psy14958 362 ID: Q47B76 (portable match)
name: Tyrosine--tRNA ligase
def: Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).
source: Dechloromonas aromatica (strain RCB) (taxid: 159087)
 ID: COG0162
name: TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
44-279
 ID: PF00579
score: 99.90 (hhsearch)
coverage over query:
233-355
 no hit PDB ID: 2jan chain A
(very confident match)
coverage over query:
32-62,78-91,106-276
psy12553 401 ID: Q9VPP5 (confident match)
name: Ribonuclease H2 subunit A
def: Catalytic subunit of RNase HII, an endonuclease that specifically degrades the RNA of RNA:DNA hybrids. Participates in DNA replication, possibly by mediating the removal of lagging-strand Okazaki fragment RNA primers during DNA replication. Mediates the excision of single ribonucleotides from DNA:RNA duplexes.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0164
name: RnhB Ribonuclease HII [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
41-276
 ID: PF01351
score: 100.00 (hhsearch)
coverage over query:
43-270
 ID: GO:0006401 (confident match)
name: RNA catabolic process
 PDB ID: 3kio chain A
(very confident match)
coverage over query:
11-185,201-335
psy16111 137 ID: A6TL09 (confident match)
name: Argininosuccinate lyase
def:
source: Alkaliphilus metalliredigens (strain QYMF) (taxid: 293826)
 ID: COG0165
name: ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
24-137
 ID: PF00206
score: 99.69 (hhsearch)
coverage over query:
29-137
 ID: GO:0004056 (confident match)
name: argininosuccinate lyase activity
 PDB ID: 1tj7 chain A
(very confident match)
coverage over query:
25-137
psy17729 127 ID: A6TL09 (confident match)
name: Argininosuccinate lyase
def:
source: Alkaliphilus metalliredigens (strain QYMF) (taxid: 293826)
 ID: COG0165
name: ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
score:99.98 (hhsearch)
coverage over query:
24-127
 ID: PF00206
score: 99.33 (hhsearch)
coverage over query:
29-127
 ID: GO:0004056 (confident match)
name: argininosuccinate lyase activity
 PDB ID: 1tj7 chain A
(very confident match)
coverage over query:
25-127
psy15027 314 ID: B1J1V0 (confident match)
name: Argininosuccinate lyase
def:
source: Pseudomonas putida (strain W619) (taxid: 390235)
 ID: COG0165
name: ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
45-305
 ID: PF00206
score: 99.92 (hhsearch)
coverage over query:
50-149
 ID: GO:0004056 (confident match)
name: argininosuccinate lyase activity
 no hit
psy17727 261 ID: B1J1V0 (portable match)
name: Argininosuccinate lyase
def:
source: Pseudomonas putida (strain W619) (taxid: 390235)
 ID: COG0165
name: ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
24-260
 ID: PF00206
score: 100.00 (hhsearch)
coverage over query:
29-260
 ID: GO:0004056 (confident match)
name: argininosuccinate lyase activity
 PDB ID: 2e9f chain A
(very confident match)
coverage over query:
25-260
psy17728 231 ID: Q2LT96 (confident match)
name: Argininosuccinate lyase
def:
source: Syntrophus aciditrophicus (strain SB) (taxid: 56780)
 ID: COG0165
name: ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
25-229
 ID: PF00206
score: 100.00 (hhsearch)
coverage over query:
29-229
 ID: GO:0004056 (confident match)
name: argininosuccinate lyase activity
 PDB ID: 2e9f chain A
(very confident match)
coverage over query:
25-229
psy3416 455 ID: B1J1V0 (confident match)
name: Argininosuccinate lyase
def:
source: Pseudomonas putida (strain W619) (taxid: 390235)
 ID: COG0165
name: ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-443
 ID: PF00206
score: 100.00 (hhsearch)
coverage over query:
1-185
 ID: GO:0044237 (confident match)
name: cellular metabolic process
 PDB ID: 2e9f chain A
(very confident match)
coverage over query:
1-151,249-443
psy3415 176 ID: A6U067 (portable match)
name: Argininosuccinate lyase
def:
source: Staphylococcus aureus (strain JH1) (taxid: 359787)
 ID: COG0165
name: ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
51-175
 ID: PF00206
score: 99.54 (hhsearch)
coverage over query:
53-175
 no hit PDB ID: 2e9f chain A
(very confident match)
coverage over query:
51-175
psy14319 486 ID: P21265 (portable match)
name: Adenylosuccinate lyase
def:
source: Gallus gallus (taxid: 9031)
 ID: COG0165
name: ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-249
 ID: PF00206
score: 99.90 (hhsearch)
coverage over query:
2-144
 no hit PDB ID: 2j91 chain A
(very confident match)
coverage over query:
205-346,409-482
psy10234 167 ID: Q2SQ67 (confident match)
name: Argininosuccinate lyase
def:
source: Hahella chejuensis (strain KCTC 2396) (taxid: 349521)
 ID: COG0165
name: ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
10-152
 ID: PF00206
score: 99.75 (hhsearch)
coverage over query:
17-151
 no hit PDB ID: 1tj7 chain A
(very confident match)
coverage over query:
12-151
psy17730 101 no hit ID: COG0165
name: ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
score:95.18 (hhsearch)
coverage over query:
1-59
 no hit no hit PDB ID: 2e9f chain A
(portable match)
coverage over query:
1-51
psy4522 560 ID: Q3ZBD7 (very confident match)
name: Glucose-6-phosphate isomerase
def: Besides it's role as a glycolytic enzyme, mammalian GPI can function as a tumor-secreted cytokine and an angiogenic factor (AMF) that stimulates endothelial cell motility. GPI is also a neurotrophic factor (Neuroleukin) for spinal and sensory neurons.
source: Bos taurus (taxid: 9913)
 ID: COG0166
name: Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
58-550
 ID: PF00342
score: 100.00 (hhsearch)
coverage over query:
62-553
 ID: GO:0005811 (very confident match)
name: lipid particle
 PDB ID: 3hjb chain A
(very confident match)
coverage over query:
8-559
psy5880 328 ID: O35435 (confident match)
name: Dihydroorotate dehydrogenase (quinone), mitochondrial
def: Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor.
source: Mus musculus (taxid: 10090)
 ID: COG0167
name: PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
57-328
 ID: PF01180
score: 100.00 (hhsearch)
coverage over query:
119-310
 ID: GO:0005758 (confident match)
name: mitochondrial intermembrane space
 PDB ID: 1tv5 chain A
(very confident match)
coverage over query:
108-327
psy16199 842 ID: Q6NYG8 (confident match)
name: Dihydropyrimidine dehydrogenase [NADP(+)]
def: Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine.
source: Danio rerio (taxid: 7955)
 ID: COG0167
name: PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
463-780
 ID: PF01180
score: 100.00 (hhsearch)
coverage over query:
348-767
 ID: GO:0050661 (confident match)
name: NADP binding
 PDB ID: 1gte chain A
(very confident match)
coverage over query:
25-442,457-461,479-479
,520-520,544-546
,564-823
psy5901 122 ID: B9JR03 (confident match)
name: Dihydroorotate dehydrogenase (quinone)
def: Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor.
source: Agrobacterium vitis (strain S4 / ATCC BAA-846) (taxid: 311402)
 ID: COG0167
name: PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
score:99.19 (hhsearch)
coverage over query:
77-118
 ID: PF01180
score: 98.92 (hhsearch)
coverage over query:
76-118
 no hit PDB ID: 3zwt chain A
(very confident match)
coverage over query:
29-118
psy13136 695 ID: G5EFC3 (confident match)
name: Potassium voltage-gated channel protein egl-36
def: Voltage-dependent potassium channel involved in the excitation of muscles operating egg-laying and defecation.
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0168
name: TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
score:90.84 (hhsearch)
coverage over query:
542-590
 ID: PF00520
score: 99.81 (hhsearch)
coverage over query:
412-591
 ID: GO:0030673 (confident match)
name: axolemma
 no hit
psy8844 353 ID: O17185 (very confident match)
name: Two pore potassium channel protein sup-9
def: Potassium channel involved in coordination of muscle contraction.
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0168
name: TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
score:91.07 (hhsearch)
coverage over query:
85-238
 ID: PF07885
score: 99.51 (hhsearch)
coverage over query:
169-247
 ID: GO:0036195 (very confident match)
name: muscle cell projection membrane
 PDB ID: 3ukm chain A
(very confident match)
coverage over query:
3-251
psy12413 192 ID: Q8R2Y3 (portable match)
name: Dolichol kinase
def: Involved in the synthesis of the sugar donor Dol-P-Man which is required in the synthesis of N-linked and O-linked oligosaccharides and for that of GPI anchors.
source: Mus musculus (taxid: 10090)
 ID: COG0170
name: SEC59 Dolichol kinase [Lipid metabolism]
score:99.60 (hhsearch)
coverage over query:
40-173
 ID: PF01148
score: 99.00 (hhsearch)
coverage over query:
138-173
 no hit no hit
psy10034 399 ID: Q2FS27 (confident match)
name: Serine--tRNA ligase
def: Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).
source: Methanospirillum hungatei (strain JF-1 / DSM 864) (taxid: 323259)
 ID: COG0172
name: SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-375
 ID: PF00587
score: 99.95 (hhsearch)
coverage over query:
148-288
 ID: GO:0005524 (confident match)
name: ATP binding
 PDB ID: 3vbb chain A
(very confident match)
coverage over query:
1-399
psy11602 1083 ID: Q39230 (confident match)
name: Serine--tRNA ligase
def: Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0172
name: SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
191-454
 ID: PF00587
score: 99.89 (hhsearch)
coverage over query:
14-141
 ID: GO:0005524 (confident match)
name: ATP binding
 PDB ID: 3vbb chain A
(very confident match)
coverage over query:
17-243
psy10664 75 ID: P26638 (confident match)
name: Serine--tRNA ligase, cytoplasmic
def: Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).
source: Mus musculus (taxid: 10090)
 ID: COG0172
name: SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:99.93 (hhsearch)
coverage over query:
1-75
 ID: PF00587
score: 99.09 (hhsearch)
coverage over query:
28-75
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 3vbb chain A
(very confident match)
coverage over query:
1-75
psy1870 264 ID: B7J1F4 (portable match)
name: Serine--tRNA ligase
def: Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).
source: Borrelia burgdorferi (strain ZS7) (taxid: 445985)
 ID: COG0172
name: SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-230
 ID: PF00587
score: 100.00 (hhsearch)
coverage over query:
7-153
 ID: GO:0043167 (confident match)
name: ion binding
 PDB ID: 1wle chain A
(very confident match)
coverage over query:
6-234
psy10095 680 ID: B0BLT0 (confident match)
name: Zinc finger protein 593
def:
source: Xenopus tropicalis (taxid: 8364)
 ID: COG0172
name: SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
153-597
 ID: PF00587
score: 99.97 (hhsearch)
coverage over query:
314-507
 no hit PDB ID: 1zr9 chain A
(very confident match)
coverage over query:
14-126
psy10035 102 ID: Q9GMB8 (confident match)
name: Serine--tRNA ligase, cytoplasmic
def: Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).
source: Bos taurus (taxid: 9913)
 ID: COG0172
name: SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:99.44 (hhsearch)
coverage over query:
2-73
 ID: PF02403
score: 99.81 (hhsearch)
coverage over query:
2-86
 ID: GO:0005524 (confident match)
name: ATP binding
 PDB ID: 3vbb chain A
(very confident match)
coverage over query:
1-74
psy3763 595 ID: B1JYI9 (very confident match)
name: Aspartate--tRNA ligase
def:
source: Burkholderia cenocepacia (strain MC0-3) (taxid: 406425)
 ID: COG0173
name: AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-592
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
118-566
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1c0a chain A
(very confident match)
coverage over query:
1-590
psy3762 595 ID: B1JYI9 (very confident match)
name: Aspartate--tRNA ligase
def:
source: Burkholderia cenocepacia (strain MC0-3) (taxid: 406425)
 ID: COG0173
name: AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-592
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
118-566
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1c0a chain A
(very confident match)
coverage over query:
1-590
psy8372 883 ID: A8LXY1 (portable match)
name: Aspartate--tRNA ligase
def:
source: Salinispora arenicola (strain CNS-205) (taxid: 391037)
 ID: COG0173
name: AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
295-883
 ID: PF00152
score: 100.00 (hhsearch)
coverage over query:
327-860
 ID: GO:0006480 (confident match)
name: N-terminal protein amino acid methylation
 PDB ID: 3a5y chain A
(very confident match)
coverage over query:
340-505,639-662,684-705
,718-741,753-859
psy10062 405 ID: P20477 (confident match)
name: Glutamine synthetase 1, mitochondrial
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0174
name: GlnA Glutamine synthetase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
3-403
 ID: PF00120
score: 99.97 (hhsearch)
coverage over query:
180-401
 ID: GO:0043234 (confident match)
name: protein complex
 PDB ID: 2d3a chain A
(very confident match)
coverage over query:
58-344,371-405
psy6604 85 ID: A5UCY0 (confident match)
name: Transaldolase
def: Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
source: Haemophilus influenzae (strain PittEE) (taxid: 374930)
 ID: COG0176
name: MipB Transaldolase [Carbohydrate transport and metabolism]
score:98.88 (hhsearch)
coverage over query:
27-67
 ID: PF00923
score: 97.71 (hhsearch)
coverage over query:
36-77
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 3hjz chain A
(very confident match)
coverage over query:
23-84
psy10958 321 ID: A6WKC4 (confident match)
name: Transaldolase
def: Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
source: Shewanella baltica (strain OS185) (taxid: 402882)
 ID: COG0176
name: MipB Transaldolase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
3-220
 ID: PF00923
score: 100.00 (hhsearch)
coverage over query:
1-227
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3m16 chain A
(very confident match)
coverage over query:
1-181,233-283
psy10967 199 ID: Q602L8 (confident match)
name: Transaldolase
def: Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
source: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) (taxid: 243233)
 ID: COG0176
name: MipB Transaldolase [Carbohydrate transport and metabolism]
score:99.94 (hhsearch)
coverage over query:
68-186
 ID: PF00923
score: 99.95 (hhsearch)
coverage over query:
68-185
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2e1d chain A
(very confident match)
coverage over query:
68-195
psy4731 436 no hit ID: COG0177
name: Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
score:96.23 (hhsearch)
coverage over query:
112-201
 ID: PF00633
score: 96.83 (hhsearch)
coverage over query:
114-137
 no hit no hit
psy4002 378 ID: O35980 (confident match)
name: Endonuclease III-like protein 1
def: Has both an apurinic and/or apyrimidinic endonuclease activity and a DNA N-glycosylase activity. Incises damaged DNA at cytosines, thymines and guanines. Acts on a damaged strand, 5' from the damaged site. Required for the repair of both oxidative DNA damage and spontaneous mutagenic lesions.
source: Mus musculus (taxid: 10090)
 ID: COG0177
name: Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
108-364
 ID: PF00730
score: 99.73 (hhsearch)
coverage over query:
152-324
 ID: GO:0006285 (confident match)
name: base-excision repair, AP site formation
 PDB ID: 2abk chain A
(very confident match)
coverage over query:
144-251,288-362
psy5683 264 ID: Q3TC72 (confident match)
name: Fumarylacetoacetate hydrolase domain-containing protein 2A
def: May have hydrolase activity.
source: Mus musculus (taxid: 10090)
 ID: COG0179
name: MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
70-259
 ID: PF01557
score: 100.00 (hhsearch)
coverage over query:
84-263
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3rr6 chain A
(very confident match)
coverage over query:
1-36,47-50,62-260
psy538 97 ID: Q6AYQ8 (confident match)
name: Acylpyruvase FAHD1, mitochondrial
def: Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0179
name: MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
1-96
 ID: PF01557
score: 99.92 (hhsearch)
coverage over query:
7-96
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3rr6 chain A
(very confident match)
coverage over query:
1-96
psy9188 104 ID: Q6P587 (confident match)
name: Acylpyruvase FAHD1, mitochondrial
def: Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.
source: Homo sapiens (taxid: 9606)
 ID: COG0179
name: MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
1-103
 ID: PF01557
score: 99.93 (hhsearch)
coverage over query:
1-103
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1saw chain A
(very confident match)
coverage over query:
1-103
psy539 70 ID: Q6P587 (portable match)
name: Acylpyruvase FAHD1, mitochondrial
def: Probable mitochondrial acylpyruvase which is able to hydrolyze acetylpyruvate and fumarylpyruvate in vitro.
source: Homo sapiens (taxid: 9606)
 ID: COG0179
name: MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
score:99.95 (hhsearch)
coverage over query:
1-70
 ID: PF01557
score: 99.80 (hhsearch)
coverage over query:
2-70
 no hit PDB ID: 1saw chain A
(very confident match)
coverage over query:
2-70
psy3680 422 ID: Q9UGM6 (confident match)
name: Tryptophan--tRNA ligase, mitochondrial
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0180
name: TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
32-343
 ID: PF00579
score: 100.00 (hhsearch)
coverage over query:
32-317
 ID: GO:0001570 (confident match)
name: vasculogenesis
 PDB ID: 2g36 chain A
(very confident match)
coverage over query:
33-362
psy5948 549 ID: Q6TGS6 (very confident match)
name: Tyrosine--tRNA ligase, cytoplasmic
def: Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).
source: Danio rerio (taxid: 7955)
 ID: COG0180
name: TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
46-345
 ID: PF00579
score: 100.00 (hhsearch)
coverage over query:
45-337
 ID: GO:0005634 (very confident match)
name: nucleus
 PDB ID: 1ntg chain A
(very confident match)
coverage over query:
366-518
psy13709 405 ID: P23381 (very confident match)
name: Tryptophan--tRNA ligase, cytoplasmic
def: Isoform 1, isoform 2 and T1-TrpRS have aminoacylation activity while T2-TrpRS lacks it. Isoform 2, T1-TrpRS and T2-TrpRS possess angiostatic activity whereas isoform 1 lacks it. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.
source: Homo sapiens (taxid: 9606)
 ID: COG0180
name: TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
90-391
 ID: PF00579
score: 100.00 (hhsearch)
coverage over query:
89-378
 ID: GO:0005829 (very confident match)
name: cytosol
 PDB ID: 1r6u chain A
(very confident match)
coverage over query:
16-405
psy14868 209 ID: P23381 (portable match)
name: Tryptophan--tRNA ligase, cytoplasmic
def: Isoform 1, isoform 2 and T1-TrpRS have aminoacylation activity while T2-TrpRS lacks it. Isoform 2, T1-TrpRS and T2-TrpRS possess angiostatic activity whereas isoform 1 lacks it. T2-TrpRS inhibits fluid shear stress-activated responses of endothelial cells. Regulates ERK, Akt, and eNOS activation pathways that are associated with angiogenesis, cytoskeletal reorganization and shear stress-responsive gene expression.
source: Homo sapiens (taxid: 9606)
 ID: COG0180
name: TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:99.96 (hhsearch)
coverage over query:
21-142
 ID: PF00579
score: 99.59 (hhsearch)
coverage over query:
22-119
 no hit PDB ID: 3i05 chain A
(very confident match)
coverage over query:
18-143
psy2883 112 ID: Q7UQA4 (portable match)
name: Tryptophan--tRNA ligase
def:
source: Rhodopirellula baltica (strain SH1) (taxid: 243090)
 ID: COG0180
name: TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:99.85 (hhsearch)
coverage over query:
1-91
 ID: PF00579
score: 96.68 (hhsearch)
coverage over query:
1-65
 no hit PDB ID: 1yi8 chain B
(very confident match)
coverage over query:
1-111
psy11425 672 ID: B2JEN9 (confident match)
name: Porphobilinogen deaminase
def: Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
source: Burkholderia phymatum (strain DSM 17167 / STM815) (taxid: 391038)
 ID: COG0181
name: HemC Porphobilinogen deaminase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
371-670
 ID: PF01379
score: 100.00 (hhsearch)
coverage over query:
369-577
 ID: GO:0006461 (confident match)
name: protein complex assembly
 PDB ID: 3tr0 chain A
(very confident match)
coverage over query:
127-314
psy11426 672 ID: B2JEN9 (confident match)
name: Porphobilinogen deaminase
def: Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
source: Burkholderia phymatum (strain DSM 17167 / STM815) (taxid: 391038)
 ID: COG0181
name: HemC Porphobilinogen deaminase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
371-670
 ID: PF01379
score: 100.00 (hhsearch)
coverage over query:
369-577
 ID: GO:0006461 (confident match)
name: protein complex assembly
 PDB ID: 1gtk chain A
(very confident match)
coverage over query:
371-670
psy11424 245 ID: B2JEN9 (confident match)
name: Porphobilinogen deaminase
def: Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
source: Burkholderia phymatum (strain DSM 17167 / STM815) (taxid: 391038)
 ID: COG0181
name: HemC Porphobilinogen deaminase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
1-243
 ID: PF01379
score: 100.00 (hhsearch)
coverage over query:
1-150
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 1gtk chain A
(very confident match)
coverage over query:
1-243
psy2576 80 ID: Q62818 (confident match)
name: Translation initiation factor eIF-2B subunit beta
def: Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0182
name: Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
score:99.87 (hhsearch)
coverage over query:
4-80
 ID: PF01008
score: 99.88 (hhsearch)
coverage over query:
3-80
 ID: GO:0009408 (confident match)
name: response to heat
 PDB ID: 1vb5 chain A
(very confident match)
coverage over query:
3-45,56-80
psy6709 288 ID: Q5HZE4 (confident match)
name: Methylthioribose-1-phosphate isomerase
def: Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
source: Rattus norvegicus (taxid: 10116)
 ID: COG0182
name: Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-288
 ID: PF01008
score: 99.73 (hhsearch)
coverage over query:
152-286
 ID: GO:0009506 (confident match)
name: plasmodesma
 PDB ID: 1w2w chain A
(very confident match)
coverage over query:
2-70,109-116,149-273
psy6711 135 ID: Q7PKS9 (confident match)
name: Methylthioribose-1-phosphate isomerase
def: Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
source: Anopheles gambiae (taxid: 7165)
 ID: COG0182
name: Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
score:99.96 (hhsearch)
coverage over query:
3-87
 ID: PF01008
score: 99.84 (hhsearch)
coverage over query:
2-86
 no hit PDB ID: 1t5o chain A
(very confident match)
coverage over query:
2-92
psy1213 472 ID: O46629 (very confident match)
name: Trifunctional enzyme subunit beta, mitochondrial
def:
source: Bos taurus (taxid: 9913)
 ID: COG0183
name: PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism]
score:100.00 (hhsearch)
coverage over query:
46-466
 ID: PF00108
score: 100.00 (hhsearch)
coverage over query:
46-318
 ID: GO:0003857 (very confident match)
name: 3-hydroxyacyl-CoA dehydrogenase activity
 PDB ID: 1afw chain A
(very confident match)
coverage over query:
39-394,409-465
psy16700 372 ID: Q5RES5 (very confident match)
name: 3-ketoacyl-CoA thiolase, mitochondrial
def: Abolishes BNIP3-mediated apoptosis and mitochondrial damage.
source: Pongo abelii (taxid: 9601)
 ID: COG0183
name: PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism]
score:100.00 (hhsearch)
coverage over query:
6-372
 ID: PF00108
score: 100.00 (hhsearch)
coverage over query:
5-268
 ID: GO:0005743 (very confident match)
name: mitochondrial inner membrane
 PDB ID: 1ulq chain A
(very confident match)
coverage over query:
6-372
psy12877 814 ID: Q8QZT1 (confident match)
name: Acetyl-CoA acetyltransferase, mitochondrial
def: Plays a major role in ketone body metabolism.
source: Mus musculus (taxid: 10090)
 ID: COG0183
name: PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism]
score:100.00 (hhsearch)
coverage over query:
1-353
 ID: PF00108
score: 100.00 (hhsearch)
coverage over query:
377-638
 ID: GO:0005777 (confident match)
name: peroxisome
 PDB ID: 4e1l chain A
(very confident match)
coverage over query:
377-689
psy4156 160 ID: Q8NY95 (confident match)
name: Probable acetyl-CoA acyltransferase
def:
source: Staphylococcus aureus (strain MW2) (taxid: 196620)
 ID: COG0183
name: PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism]
score:99.91 (hhsearch)
coverage over query:
37-159
 ID: PF00108
score: 100.00 (hhsearch)
coverage over query:
37-158
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1wl4 chain A
(very confident match)
coverage over query:
33-133
psy4157 441 ID: Q2YVF5 (confident match)
name: Probable acetyl-CoA acyltransferase
def:
source: Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036)
 ID: COG0183
name: PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism]
score:99.96 (hhsearch)
coverage over query:
209-438
 ID: PF00108
score: 100.00 (hhsearch)
coverage over query:
1-141
 ID: GO:0031090 (confident match)
name: organelle membrane
 PDB ID: 1wl4 chain A
(very confident match)
coverage over query:
209-440
psy13266 280 ID: P32020 (confident match)
name: Non-specific lipid-transfer protein
def: Mediates in vitro the transfer of all common phospholipids, cholesterol and gangliosides between membranes. May play a role in regulating steroidogenesis.
source: Mus musculus (taxid: 10090)
 ID: COG0183
name: PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism]
score:99.83 (hhsearch)
coverage over query:
3-126
 ID: PF02803
score: 99.93 (hhsearch)
coverage over query:
2-126
 ID: GO:0005730 (confident match)
name: nucleolus
 PDB ID: 1c44 chain A
(very confident match)
coverage over query:
154-269
psy13256 216 ID: P32020 (confident match)
name: Non-specific lipid-transfer protein
def: Mediates in vitro the transfer of all common phospholipids, cholesterol and gangliosides between membranes. May play a role in regulating steroidogenesis.
source: Mus musculus (taxid: 10090)
 ID: COG0183
name: PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism]
score:100.00 (hhsearch)
coverage over query:
10-216
 ID: PF02803
score: 99.87 (hhsearch)
coverage over query:
102-216
 ID: GO:0005730 (confident match)
name: nucleolus
 PDB ID: 1afw chain A
(very confident match)
coverage over query:
15-178,197-216
psy10774 207 ID: P45369 (confident match)
name: Acetyl-CoA acetyltransferase
def:
source: Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) (taxid: 572477)
 ID: COG0183
name: PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism]
score:99.77 (hhsearch)
coverage over query:
51-205
 ID: PF02803
score: 99.96 (hhsearch)
coverage over query:
105-205
 ID: GO:0005777 (confident match)
name: peroxisome
 PDB ID: 1wl4 chain A
(very confident match)
coverage over query:
49-205
psy5134 648 ID: Q9UH36 (portable match)
name: SRR1-like protein
def: May be involved in a circadian clock input pathway.
source: Homo sapiens (taxid: 9606)
 ID: COG0184
name: RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]
score:99.91 (hhsearch)
coverage over query:
460-544
 ID: PF00312
score: 99.94 (hhsearch)
coverage over query:
462-544
 no hit PDB ID: 1a32 chain A
(confident match)
coverage over query:
460-544
psy7749 319 ID: P59224 (confident match)
name: 40S ribosomal protein S13-2
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0184
name: RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]
score:99.91 (hhsearch)
coverage over query:
212-315
 ID: PF08069
score: 99.98 (hhsearch)
coverage over query:
169-228
 ID: GO:0005730 (very confident match)
name: nucleolus
 PDB ID: 2xzm chain O
(very confident match)
coverage over query:
169-319
psy2143 149 ID: P62846 (very confident match)
name: 40S ribosomal protein S15
def:
source: Gallus gallus (taxid: 9031)
 ID: COG0185
name: RpsS Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]
score:99.92 (hhsearch)
coverage over query:
82-149
 ID: PF00203
score: 99.78 (hhsearch)
coverage over query:
84-149
 ID: GO:0000056 (confident match)
name: ribosomal small subunit export from nucleus
 PDB ID: 3iz6 chain R
(very confident match)
coverage over query:
39-149
psy10000 193 ID: Q3T0V4 (very confident match)
name: 40S ribosomal protein S11
def:
source: Bos taurus (taxid: 9913)
 ID: COG0186
name: RpsQ Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
98-185
 ID: PF00366
score: 99.97 (hhsearch)
coverage over query:
110-180
 ID: GO:0022627 (very confident match)
name: cytosolic small ribosomal subunit
 PDB ID: 3iz6 chain P
(very confident match)
coverage over query:
1-25,62-192
psy13112 302 ID: Q9Y2R5 (portable match)
name: 28S ribosomal protein S17, mitochondrial
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0186
name: RpsQ Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]
score:99.84 (hhsearch)
coverage over query:
94-155
 ID: PF00366
score: 99.79 (hhsearch)
coverage over query:
95-150
 no hit PDB ID: 3u5c chain L
(confident match)
coverage over query:
95-155
psy13356 833 ID: P22118 (very confident match)
name: DNA gyrase subunit B
def: DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings.
source: Neisseria gonorrhoeae (taxid: 485)
 ID: COG0187
name: GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
16-833
 ID: PF00204
score: 100.00 (hhsearch)
coverage over query:
250-425
 ID: GO:0009330 (confident match)
name: DNA topoisomerase complex (ATP-hydrolyzing)
 PDB ID: 2xcs chain B
(very confident match)
coverage over query:
433-568,767-833
psy13357 833 ID: P22118 (very confident match)
name: DNA gyrase subunit B
def: DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings.
source: Neisseria gonorrhoeae (taxid: 485)
 ID: COG0187
name: GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
16-833
 ID: PF00204
score: 100.00 (hhsearch)
coverage over query:
250-425
 ID: GO:0009330 (confident match)
name: DNA topoisomerase complex (ATP-hydrolyzing)
 PDB ID: 2xcs chain B
(very confident match)
coverage over query:
433-568,767-833
psy13360 1161 ID: Q89B37 (confident match)
name: DNA gyrase subunit B
def: DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings.
source: Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) (taxid: 224915)
 ID: COG0187
name: GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
344-1161
 ID: PF00204
score: 100.00 (hhsearch)
coverage over query:
578-753
 ID: GO:0009330 (confident match)
name: DNA topoisomerase complex (ATP-hydrolyzing)
 PDB ID: 2xcs chain B
(very confident match)
coverage over query:
761-896,1095-1161
psy7164 2307 ID: Q6D1H8 (portable match)
name: DNA polymerase IV
def: Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
source: Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491)
 ID: COG0187
name: GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
33-633
 ID: PF00521
score: 100.00 (hhsearch)
coverage over query:
657-899
 no hit PDB ID: 1zxm chain A
(very confident match)
coverage over query:
31-151,177-373,409-454
psy14505 1619 ID: P48369 (confident match)
name: DNA gyrase subunit A
def: DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings.
source: Aeromonas salmonicida (taxid: 645)
 ID: COG0188
name: GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
1-850
 ID: PF00521
score: 100.00 (hhsearch)
coverage over query:
32-508
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 1zi0 chain A
(very confident match)
coverage over query:
540-850
psy11240 363 ID: P41516 (confident match)
name: DNA topoisomerase 2-alpha
def: Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0188
name: GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
86-353
 ID: PF00521
score: 100.00 (hhsearch)
coverage over query:
109-345
 ID: GO:0042826 (confident match)
name: histone deacetylase binding
 PDB ID: 3qx3 chain A
(very confident match)
coverage over query:
2-358
psy10837 316 ID: O88935 (confident match)
name: Synapsin-1
def: Neuronal phosphoprotein that coats synaptic vesicles, binds to the cytoskeleton, and is believed to function in the regulation of neurotransmitter release. Regulation of neurotransmitter release. The complex formed with NOS1 and CAPON proteins is necessary for specific nitric-oxide functions at a presynaptic level.
source: Mus musculus (taxid: 10090)
 ID: COG0189
name: RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
score:95.25 (hhsearch)
coverage over query:
168-314
 ID: PF02078
score: 100.00 (hhsearch)
coverage over query:
101-202
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2p0a chain A
(very confident match)
coverage over query:
103-315
psy10366 340 ID: O88935 (confident match)
name: Synapsin-1
def: Neuronal phosphoprotein that coats synaptic vesicles, binds to the cytoskeleton, and is believed to function in the regulation of neurotransmitter release. Regulation of neurotransmitter release. The complex formed with NOS1 and CAPON proteins is necessary for specific nitric-oxide functions at a presynaptic level.
source: Mus musculus (taxid: 10090)
 ID: COG0189
name: RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-225
 ID: PF02750
score: 100.00 (hhsearch)
coverage over query:
25-222
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1pk8 chain A
(very confident match)
coverage over query:
5-225
psy9333 308 ID: Q5PPI9 (very confident match)
name: Probable tubulin polyglutamylase TTLL1
def: Catalytic subunit of the neuronal tubulin polyglutamylase complex. Modifies alpha- and beta-tubulin, generating side chains of glutamate on the gamma-carboxyl groups of specific glutamate residues within the C-terminal tail of alpha- and beta-tubulin.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0189
name: RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
score:97.35 (hhsearch)
coverage over query:
81-192
 ID: PF03133
score: 100.00 (hhsearch)
coverage over query:
25-302
 ID: GO:0004835 (confident match)
name: tubulin-tyrosine ligase activity
 PDB ID: 3tig chain A
(very confident match)
coverage over query:
26-58,73-295
psy11344 586 ID: A4Q9E4 (portable match)
name: Probable tubulin polyglutamylase TTLL2
def: Probable tubulin polyglutamylase that forms polyglutamate side chains on tubulin. Probably acts when complexed with other proteins.
source: Mus musculus (taxid: 10090)
 ID: COG0189
name: RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
score:98.81 (hhsearch)
coverage over query:
75-296
 ID: PF03133
score: 100.00 (hhsearch)
coverage over query:
39-321
 ID: GO:0018095 (confident match)
name: protein polyglutamylation
 PDB ID: 3tig chain A
(very confident match)
coverage over query:
1-296
psy9480 395 ID: A8CVX7 (portable match)
name: Tubulin polyglutamylase ttll6
def: Polyglutamylase which preferentially modifies alpha-tubulin. Mediates tubulin polyglutamylation in cilia. Involved in the side-chain elongation step of the polyglutamylation reaction rather than in the initiation step. Required for formation of olfactory cilia.
source: Danio rerio (taxid: 7955)
 ID: COG0189
name: RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
score:99.09 (hhsearch)
coverage over query:
82-341
 ID: PF03133
score: 100.00 (hhsearch)
coverage over query:
77-363
 ID: GO:0018095 (confident match)
name: protein polyglutamylation
 PDB ID: 3tig chain A
(very confident match)
coverage over query:
34-296,307-384
psy3860 119 ID: A8CVX7 (portable match)
name: Tubulin polyglutamylase ttll6
def: Polyglutamylase which preferentially modifies alpha-tubulin. Mediates tubulin polyglutamylation in cilia. Involved in the side-chain elongation step of the polyglutamylation reaction rather than in the initiation step. Required for formation of olfactory cilia.
source: Danio rerio (taxid: 7955)
 ID: COG0189
name: RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
score:98.28 (hhsearch)
coverage over query:
26-91
 ID: PF03133
score: 99.98 (hhsearch)
coverage over query:
1-118
 ID: GO:0018095 (confident match)
name: protein polyglutamylation
 PDB ID: 3tig chain A
(very confident match)
coverage over query:
1-109
psy3858 180 ID: A8CVX7 (portable match)
name: Tubulin polyglutamylase ttll6
def: Polyglutamylase which preferentially modifies alpha-tubulin. Mediates tubulin polyglutamylation in cilia. Involved in the side-chain elongation step of the polyglutamylation reaction rather than in the initiation step. Required for formation of olfactory cilia.
source: Danio rerio (taxid: 7955)
 ID: COG0189
name: RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
score:97.70 (hhsearch)
coverage over query:
93-173
 ID: PF03133
score: 100.00 (hhsearch)
coverage over query:
56-180
 ID: GO:0018095 (confident match)
name: protein polyglutamylation
 PDB ID: 3tig chain A
(very confident match)
coverage over query:
14-180
psy2625 396 ID: A8CVX7 (portable match)
name: Tubulin polyglutamylase ttll6
def: Polyglutamylase which preferentially modifies alpha-tubulin. Mediates tubulin polyglutamylation in cilia. Involved in the side-chain elongation step of the polyglutamylation reaction rather than in the initiation step. Required for formation of olfactory cilia.
source: Danio rerio (taxid: 7955)
 ID: COG0189
name: RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
score:98.91 (hhsearch)
coverage over query:
123-323
 ID: PF03133
score: 100.00 (hhsearch)
coverage over query:
65-346
 ID: GO:0043229 (confident match)
name: intracellular organelle
 PDB ID: 3tig chain A
(very confident match)
coverage over query:
119-344
psy10924 322 ID: A4Q9F1 (portable match)
name: Protein monoglycylase TTLL8
def: Monoglycylase which modifies both tubulin and non-tubulin proteins, generating side chains of glycine on the gamma-carboxyl groups of specific glutamate residues of target proteins. Monoglycylates tubulin, with a preference for alpha-tubulin toward beta-tubulin. Has the ability to modify non-tubulin proteins such as ANP32A, ANP32B, SET and NCL. Involved in the side-chain initiation step of the glycylation reaction by adding a single glycine chain to generate monoglycine side chains. Not involved in elongation step of the polyglycylation reaction.
source: Mus musculus (taxid: 10090)
 ID: COG0189
name: RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
score:99.11 (hhsearch)
coverage over query:
29-229
 ID: PF03133
score: 100.00 (hhsearch)
coverage over query:
4-254
 ID: GO:0044441 (confident match)
name: cilium part
 PDB ID: 3tig chain A
(very confident match)
coverage over query:
8-259
psy6987 204 ID: Q8CHB8 (confident match)
name: Tubulin polyglutamylase TTLL5
def: Polyglutamylase which preferentially modifies alpha-tubulin. Involved in the side-chain initiation step of the polyglutamylation reaction rather than in the elongation step. Increases the effects of NCOA2 in glucocorticoid receptor-mediated repression and induction and in androgen receptor-mediated induction.
source: Mus musculus (taxid: 10090)
 ID: COG0189
name: RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
score:97.42 (hhsearch)
coverage over query:
35-168
 ID: PF03133
score: 100.00 (hhsearch)
coverage over query:
33-196
 ID: GO:0044441 (confident match)
name: cilium part
 PDB ID: 3tig chain A
(very confident match)
coverage over query:
2-201
psy13386 714 ID: A8CVX7 (portable match)
name: Tubulin polyglutamylase ttll6
def: Polyglutamylase which preferentially modifies alpha-tubulin. Mediates tubulin polyglutamylation in cilia. Involved in the side-chain elongation step of the polyglutamylation reaction rather than in the initiation step. Required for formation of olfactory cilia.
source: Danio rerio (taxid: 7955)
 ID: COG0189
name: RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
score:98.50 (hhsearch)
coverage over query:
93-354
 ID: PF03133
score: 100.00 (hhsearch)
coverage over query:
91-375
 ID: GO:0070740 (confident match)
name: tubulin-glutamic acid ligase activity
 PDB ID: 3tig chain A
(very confident match)
coverage over query:
50-375
psy16684 429 ID: Q641W7 (confident match)
name: Probable tubulin polyglutamylase TTLL9
def: Probable tubulin polyglutamylase that forms polyglutamate side chains on tubulin. Probably acts when complexed with other proteins.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0189
name: RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
score:99.23 (hhsearch)
coverage over query:
103-335
 ID: PF03133
score: 100.00 (hhsearch)
coverage over query:
58-358
 ID: GO:0070740 (confident match)
name: tubulin-glutamic acid ligase activity
 PDB ID: 3tig chain A
(very confident match)
coverage over query:
18-158,178-357
psy10923 520 ID: A4Q9F1 (portable match)
name: Protein monoglycylase TTLL8
def: Monoglycylase which modifies both tubulin and non-tubulin proteins, generating side chains of glycine on the gamma-carboxyl groups of specific glutamate residues of target proteins. Monoglycylates tubulin, with a preference for alpha-tubulin toward beta-tubulin. Has the ability to modify non-tubulin proteins such as ANP32A, ANP32B, SET and NCL. Involved in the side-chain initiation step of the glycylation reaction by adding a single glycine chain to generate monoglycine side chains. Not involved in elongation step of the polyglycylation reaction.
source: Mus musculus (taxid: 10090)
 ID: COG0189
name: RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
score:98.03 (hhsearch)
coverage over query:
75-139
 ID: PF03133
score: 100.00 (hhsearch)
coverage over query:
25-312
 no hit PDB ID: 3tig chain A
(very confident match)
coverage over query:
25-241,254-312
psy14199 677 ID: Q09512 (confident match)
name: Tubulin--tyrosine ligase-like protein 12
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0189
name: RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
score:92.83 (hhsearch)
coverage over query:
415-486
 ID: PF03133
score: 100.00 (hhsearch)
coverage over query:
373-674
 no hit PDB ID: 3tig chain A
(very confident match)
coverage over query:
331-489,528-610,623-673
psy16955 842 ID: Q80UG8 (portable match)
name: Tubulin polyglutamylase TTLL4
def: Polyglutamylase which preferentially modifies beta-tubulin and nucleosome assembly proteins NAP1 and NAP2. Involved in the side-chain initiation step of the polyglutamylation reaction rather than in the elongation step.
source: Mus musculus (taxid: 10090)
 ID: COG0189
name: RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
score:98.18 (hhsearch)
coverage over query:
431-696
 ID: PF03133
score: 100.00 (hhsearch)
coverage over query:
426-717
 no hit PDB ID: 3tig chain A
(very confident match)
coverage over query:
388-722
psy9020 1105 ID: Q9VM91 (portable match)
name: Tubulin glycylase 3A
def: Polylycylase which modifies alpha- and beta-tubulin, generating side chains of glycine on the gamma-carboxyl groups of specific glutamate residues within the C-terminal tail of alpha-and beta-tubulin. Involved both in the side-chain initiation and elongation steps of the polyglycylation reaction by adding a single glycine chain to generate monoglycine side chains and by elongating monoglycine side chains to polyglycine side chains.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0189
name: RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
score:98.75 (hhsearch)
coverage over query:
761-960
 ID: PF03133
score: 100.00 (hhsearch)
coverage over query:
758-985
 no hit PDB ID: 3tig chain A
(very confident match)
coverage over query:
755-989
psy10158 1266 ID: Q5REW0 (very confident match)
name: Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2
def: Bifunctional inositol kinase that catalyzes the formation of diphosphoinositol pentakisphosphate (InsP7 or PP-InsP5) and bi-diphosphoinositol tetrakisphosphate (InsP8 or PP2-InsP4). Converts inositolitol hexakisphosphate (InsP6) to InsP7. Also able to convert InsP7 to InsP8. Probably specifically mediates the formation of 4PP-InsP5 and 6PP-InsP5 InsP7 isomers but not of 5PP-IP5 InsP7 isomer.
source: Pongo abelii (taxid: 9601)
 ID: COG0189
name: RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
score:99.94 (hhsearch)
coverage over query:
52-330
 ID: PF08443
score: 99.92 (hhsearch)
coverage over query:
137-337
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3t7a chain A
(very confident match)
coverage over query:
46-372
psy4615 477 ID: Q99V34 (portable match)
name: Bifunctional protein FolD
def: Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.
source: Staphylococcus aureus (strain Mu50 / ATCC 700699) (taxid: 158878)
 ID: COG0190
name: FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
72-290
 ID: PF00763
score: 99.97 (hhsearch)
coverage over query:
72-190
 ID: GO:0004488 (confident match)
name: methylenetetrahydrofolate dehydrogenase (NADP+) activity
 PDB ID: 4a26 chain A
(very confident match)
coverage over query:
70-289
psy7981 216 ID: O96553 (confident match)
name: C-1-tetrahydrofolate synthase, cytoplasmic
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0190
name: FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
11-214
 ID: PF00763
score: 100.00 (hhsearch)
coverage over query:
11-131
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3p2o chain A
(very confident match)
coverage over query:
9-214
psy10894 364 ID: P31153 (very confident match)
name: S-adenosylmethionine synthase isoform type-2
def: Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
source: Homo sapiens (taxid: 9606)
 ID: COG0192
name: MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
1-362
 ID: PF02773
score: 100.00 (hhsearch)
coverage over query:
220-357
 ID: GO:0005829 (very confident match)
name: cytosol
 PDB ID: 2p02 chain A
(very confident match)
coverage over query:
1-363
psy15208 1027 ID: A3NER1 (confident match)
name: Adenosylhomocysteinase
def: May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
source: Burkholderia pseudomallei (strain 668) (taxid: 320373)
 ID: COG0192
name: MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
182-564
 ID: PF05221
score: 100.00 (hhsearch)
coverage over query:
564-1026
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3iml chain A
(very confident match)
coverage over query:
181-563
psy18088 166 ID: Q4FQY7 (confident match)
name: Guanylate kinase
def: Essential for recycling GMP and indirectly, cGMP.
source: Psychrobacter arcticus (strain DSM 17307 / 273-4) (taxid: 259536)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:99.96 (hhsearch)
coverage over query:
59-164
 ID: PF00625
score: 99.95 (hhsearch)
coverage over query:
59-163
 ID: GO:0004385 (confident match)
name: guanylate kinase activity
 PDB ID: 1lvg chain A
(very confident match)
coverage over query:
59-159
psy10228 225 ID: Q63622 (confident match)
name: Disks large homolog 2
def: Required for perception of chronic pain through NMDA receptor signaling. Regulates surface expression of NMDA receptors in dorsal horn neurons of the spinal cord. Interacts with the cytoplasmic tail of NMDA receptor subunits as well as inward rectifying potassium channels. Involved in regulation of synaptic stability at cholinergic synapses. Part of the postsynaptic protein scaffold of excitatory synapses.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
49-212
 ID: PF00625
score: 100.00 (hhsearch)
coverage over query:
50-212
 ID: GO:0004385 (confident match)
name: guanylate kinase activity
 PDB ID: 3tvt chain A
(very confident match)
coverage over query:
66-225
psy16887 160 ID: Q95168 (portable match)
name: Tight junction protein ZO-2
def: Plays a role in tight junctions and adherens junctions.
source: Canis familiaris (taxid: 9615)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:99.89 (hhsearch)
coverage over query:
29-158
 ID: PF00625
score: 99.91 (hhsearch)
coverage over query:
29-158
 ID: GO:0005737 (confident match)
name: cytoplasm
 PDB ID: 3tvt chain A
(very confident match)
coverage over query:
13-159
psy16959 366 ID: Q9JLB2 (portable match)
name: MAGUK p55 subfamily member 5
def: May play a role in tight junctions biogenesis and in the establishment of cell polarity in epithelial cells. May modulate SC6A1/GAT1-mediated GABA uptake by stabilizing the transporter. Required for localization of EZR to the apical membrane of parietal cells and may play a role in the dynamic remodeling of the apical cytoskeleton.
source: Mus musculus (taxid: 10090)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:99.96 (hhsearch)
coverage over query:
103-359
 ID: PF00625
score: 99.96 (hhsearch)
coverage over query:
104-355
 ID: GO:0005737 (confident match)
name: cytoplasm
 PDB ID: 2xkx chain A
(very confident match)
coverage over query:
1-181,299-355
psy9156 177 ID: Q64520 (confident match)
name: Guanylate kinase
def: Essential for recycling GMP and indirectly, cGMP.
source: Mus musculus (taxid: 10090)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-161
 ID: PF00625
score: 100.00 (hhsearch)
coverage over query:
2-159
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1kjw chain A
(very confident match)
coverage over query:
2-160
psy10229 231 ID: Q28C55 (confident match)
name: Disks large homolog 1
def: Essential multidomain scaffolding protein required for normal development. Recruits channels, receptors and signaling molecules to discrete plasma membrane domains in polarized cells. May play a role in adherens junction assembly, signal transduction and cell proliferation.
source: Xenopus tropicalis (taxid: 8364)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:99.93 (hhsearch)
coverage over query:
111-230
 ID: PF00625
score: 99.95 (hhsearch)
coverage over query:
111-230
 ID: GO:0005923 (confident match)
name: tight junction
 PDB ID: 1kjw chain A
(very confident match)
coverage over query:
11-231
psy9827 627 ID: O97758 (portable match)
name: Tight junction protein ZO-1
def: The N-terminal may be involved in transducing a signal required for tight junction assembly, while the C-terminal may have specific properties of tight junctions. The alpha domain might be involved in stabilizing junctions. Plays a role in the regulation of cell migration by targeting CDC42BPB to the leading edge of migrating cells.
source: Canis familiaris (taxid: 9615)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:99.92 (hhsearch)
coverage over query:
453-602
 ID: PF00625
score: 99.90 (hhsearch)
coverage over query:
453-601
 ID: GO:0043231 (confident match)
name: intracellular membrane-bounded organelle
 PDB ID: 3kfv chain A
(very confident match)
coverage over query:
312-613
psy14166 264 ID: Q5RDQ2 (portable match)
name: MAGUK p55 subfamily member 5
def: May play a role in tight junctions biogenesis and in the establishment of cell polarity in epithelial cells. May modulate SC6A1/GAT1-mediated GABA uptake by stabilizing the transporter. Required for localization of EZR to the apical membrane of parietal cells and may play a role in the dynamic remodeling of the apical cytoskeleton.
source: Pongo abelii (taxid: 9601)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
109-245
 ID: PF00625
score: 100.00 (hhsearch)
coverage over query:
110-241
 ID: GO:0043234 (confident match)
name: protein complex
 PDB ID: 3ney chain A
(very confident match)
coverage over query:
109-234
psy6910 1145 ID: Q86UL8 (confident match)
name: Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2
def: Seems to act as scaffold molecule at synaptic junctions by assembling neurotransmitter receptors and cell adhesion proteins. May play a role in regulating activin-mediated signaling in neuronal cells. Enhances the ability of PTEN to suppress AKT1 activation.
source: Homo sapiens (taxid: 9606)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
99-265
 ID: PF00625
score: 99.93 (hhsearch)
coverage over query:
100-264
 ID: GO:0044464 (confident match)
name: cell part
 PDB ID: 2kpk chain A
(very confident match)
coverage over query:
422-543
psy4417 440 ID: Q9NZW5 (confident match)
name: MAGUK p55 subfamily member 6
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
163-420
 ID: PF00625
score: 99.97 (hhsearch)
coverage over query:
163-419
 ID: GO:0044464 (confident match)
name: cell part
 PDB ID: 1kjw chain A
(very confident match)
coverage over query:
97-318,334-334,349-352
,375-430
psy933 330 ID: O14936 (confident match)
name: Peripheral plasma membrane protein CASK
def: Multidomain scaffolding protein with a role in synaptic transmembrane protein anchoring and ion channel trafficking. Contributes to neural development and regulation of gene expression via interaction with the transcription factor TRB1. Binds to cell-surface proteins, including amyloid precursor protein, neurexins and syndecans. May mediate a link between the extracellular matrix and the actin cytoskeleton via its interaction with syndecan and with the actin/spectrin-binding protein 4.1.
source: Homo sapiens (taxid: 9606)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
92-267
 ID: PF00625
score: 100.00 (hhsearch)
coverage over query:
93-267
 ID: GO:0046928 (confident match)
name: regulation of neurotransmitter secretion
 PDB ID: 1kgd chain A
(very confident match)
coverage over query:
90-267
psy12793 352 ID: Q24210 (confident match)
name: Peripheral plasma membrane protein CASK
def: May regulate transmembrane proteins that bind calcium, calmodulin, or nucleotides. Functionally modulates eag potassium channels; increases eag current and whole-cell conductance. Also regulates autophosphorylation of CaMKII.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:99.81 (hhsearch)
coverage over query:
187-350
 ID: PF00625
score: 99.80 (hhsearch)
coverage over query:
188-350
 ID: GO:0046928 (confident match)
name: regulation of neurotransmitter secretion
 PDB ID: 1kjw chain A
(very confident match)
coverage over query:
66-151,163-222,295-350
psy6613 510 ID: P54287 (confident match)
name: Voltage-dependent L-type calcium channel subunit beta-3
def: The beta subunit of voltage-dependent calcium channels contributes to the function of the calcium channel by increasing peak calcium current, shifting the voltage dependencies of activation and inactivation, modulating G protein inhibition and controlling the alpha-1 subunit membrane targeting.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:99.97 (hhsearch)
coverage over query:
146-293
 ID: PF00625
score: 99.95 (hhsearch)
coverage over query:
147-294
 ID: GO:0050852 (confident match)
name: T cell receptor signaling pathway
 PDB ID: 4dey chain A
(very confident match)
coverage over query:
338-507
psy9828 311 ID: O97758 (portable match)
name: Tight junction protein ZO-1
def: The N-terminal may be involved in transducing a signal required for tight junction assembly, while the C-terminal may have specific properties of tight junctions. The alpha domain might be involved in stabilizing junctions. Plays a role in the regulation of cell migration by targeting CDC42BPB to the leading edge of migrating cells.
source: Canis familiaris (taxid: 9615)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:99.12 (hhsearch)
coverage over query:
84-187
 ID: PF00625
score: 99.53 (hhsearch)
coverage over query:
84-187
 no hit PDB ID: 3kfv chain A
(very confident match)
coverage over query:
87-164,176-197
psy9829 333 ID: O97758 (portable match)
name: Tight junction protein ZO-1
def: The N-terminal may be involved in transducing a signal required for tight junction assembly, while the C-terminal may have specific properties of tight junctions. The alpha domain might be involved in stabilizing junctions. Plays a role in the regulation of cell migration by targeting CDC42BPB to the leading edge of migrating cells.
source: Canis familiaris (taxid: 9615)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:98.63 (hhsearch)
coverage over query:
1-86
 ID: PF00625
score: 99.29 (hhsearch)
coverage over query:
1-95
 no hit PDB ID: 1kjw chain A
(very confident match)
coverage over query:
2-95
psy18086 166 ID: Q182S8 (portable match)
name: Guanylate kinase
def: Essential for recycling GMP and indirectly, cGMP.
source: Clostridium difficile (strain 630) (taxid: 272563)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:99.97 (hhsearch)
coverage over query:
3-149
 ID: PF00625
score: 99.92 (hhsearch)
coverage over query:
3-144
 no hit PDB ID: 1z6g chain A
(very confident match)
coverage over query:
3-47,67-147
psy3841 73 ID: Q8TDM6 (portable match)
name: Disks large homolog 5
def: May play a role at the plasma membrane in the maintenance of the structure of epithelial cells and in the transmission of extracellular signals to the membrane and cytoskeleton.
source: Homo sapiens (taxid: 9606)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:98.96 (hhsearch)
coverage over query:
4-61
 ID: PF00625
score: 99.68 (hhsearch)
coverage over query:
4-63
 no hit PDB ID: 3kfv chain A
(very confident match)
coverage over query:
11-65
psy3835 1659 ID: Q8TDM6 (portable match)
name: Disks large homolog 5
def: May play a role at the plasma membrane in the maintenance of the structure of epithelial cells and in the transmission of extracellular signals to the membrane and cytoskeleton.
source: Homo sapiens (taxid: 9606)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1473-1650
 ID: PF00625
score: 99.97 (hhsearch)
coverage over query:
1474-1648
 no hit PDB ID: 1kjw chain A
(very confident match)
coverage over query:
1332-1407,1418-1658
psy4405 91 ID: Q9NZW5 (confident match)
name: MAGUK p55 subfamily member 6
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0194
name: Gmk Guanylate kinase [Nucleotide transport and metabolism]
score:99.92 (hhsearch)
coverage over query:
5-86
 ID: PF00625
score: 99.89 (hhsearch)
coverage over query:
5-87
 no hit PDB ID: 1kgd chain A
(very confident match)
coverage over query:
3-86
psy7973 132 ID: O76206 (confident match)
name: Putative riboflavin kinase
def: Catalyzes the phosphorylation of riboflavin (vitamin B2) to form flavin-mononucleotide (FMN).
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0196
name: RibF FAD synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
2-132
 ID: PF01687
score: 100.00 (hhsearch)
coverage over query:
21-132
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 1nb0 chain A
(very confident match)
coverage over query:
21-132
psy6080 240 ID: Q5M818 (confident match)
name: 39S ribosomal protein L16, mitochondrial
def: Component of the large subunit of mitochondrial ribosome.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0197
name: RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
52-191
 ID: PF00252
score: 100.00 (hhsearch)
coverage over query:
53-187
 ID: GO:0005762 (confident match)
name: mitochondrial large ribosomal subunit
 PDB ID: 2ftc chain I
(very confident match)
coverage over query:
67-184
psy1114 480 ID: Q2TBW8 (confident match)
name: 60S ribosomal protein L10-like
def:
source: Bos taurus (taxid: 9913)
 ID: COG0197
name: RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
79-241
 ID: PF00252
score: 99.97 (hhsearch)
coverage over query:
72-234
 ID: GO:0043025 (confident match)
name: neuronal cell body
 PDB ID: 2zkr chain h
(very confident match)
coverage over query:
341-452
psy1816 122 ID: Q2TBW8 (confident match)
name: 60S ribosomal protein L10-like
def:
source: Bos taurus (taxid: 9913)
 ID: COG0197
name: RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
score:99.67 (hhsearch)
coverage over query:
5-54
 ID: PF00252
score: 99.37 (hhsearch)
coverage over query:
1-53
 ID: GO:0043025 (confident match)
name: neuronal cell body
 PDB ID: 3j0l chain J
(very confident match)
coverage over query:
1-98
psy10530 141 ID: P51414 (very confident match)
name: 60S ribosomal protein L26-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0198
name: RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]
score:99.86 (hhsearch)
coverage over query:
58-132
 ID: PF00467
score: 98.75 (hhsearch)
coverage over query:
64-96
 ID: GO:0003723 (very confident match)
name: RNA binding
 PDB ID: 2zkr chain t
(very confident match)
coverage over query:
14-139
psy5495 273 ID: Q9VMY1 (confident match)
name: Probable 39S ribosomal protein L24, mitochondrial
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0198
name: RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]
score:99.96 (hhsearch)
coverage over query:
152-251
 ID: PF00467
score: 98.56 (hhsearch)
coverage over query:
157-188
 ID: GO:0044464 (confident match)
name: cell part
 PDB ID: 3v2d chain Y
(very confident match)
coverage over query:
152-254
psy13744 296 ID: Q9STN3 (portable match)
name: Putative transcription elongation factor SPT5 homolog 1
def: May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0198
name: RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]
score:94.65 (hhsearch)
coverage over query:
245-271
 ID: PF00467
score: 97.37 (hhsearch)
coverage over query:
246-276
 no hit no hit
psy9697 128 ID: A5EX86 (confident match)
name: 30S ribosomal protein S14
def: Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
source: Dichelobacter nodosus (strain VCS1703A) (taxid: 246195)
 ID: COG0199
name: RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
score:99.91 (hhsearch)
coverage over query:
75-128
 ID: PF00253
score: 99.87 (hhsearch)
coverage over query:
74-127
 ID: GO:0031965 (confident match)
name: nuclear membrane
 PDB ID: 2eo6 chain A
(very confident match)
coverage over query:
1-95
psy6392 198 ID: Q0VC21 (confident match)
name: 39S ribosomal protein L15, mitochondrial
def:
source: Bos taurus (taxid: 9913)
 ID: COG0200
name: RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]
score:99.65 (hhsearch)
coverage over query:
4-102
 ID: PF00828
score: 99.70 (hhsearch)
coverage over query:
5-101
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 3v2d chain P
(confident match)
coverage over query:
4-102
psy9422 211 ID: P47831 (portable match)
name: 60S ribosomal protein L28 (Fragment)
def:
source: Candida albicans (taxid: 5476)
 ID: COG0200
name: RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]
score:99.93 (hhsearch)
coverage over query:
54-211
 ID: PF00828
score: 99.90 (hhsearch)
coverage over query:
67-210
 no hit PDB ID: 4a17 chain K
(very confident match)
coverage over query:
52-211
psy5830 503 ID: Q90YL4 (very confident match)
name: Protein transport protein Sec61 subunit alpha-like 2
def: Appears to play a crucial role in the insertion of secretory and membrane polypeptides into the ER. It is required for assembly of membrane and secretory proteins. Found to be tightly associated with membrane-bound ribosomes, either directly or through adaptor proteins.
source: Danio rerio (taxid: 7955)
 ID: COG0201
name: SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
score:100.00 (hhsearch)
coverage over query:
12-494
 ID: PF00344
score: 100.00 (hhsearch)
coverage over query:
76-486
 ID: GO:0016020 (confident match)
name: membrane
 PDB ID: 2wwb chain A
(very confident match)
coverage over query:
1-289,333-503
psy5829 147 ID: Q90YL4 (confident match)
name: Protein transport protein Sec61 subunit alpha-like 2
def: Appears to play a crucial role in the insertion of secretory and membrane polypeptides into the ER. It is required for assembly of membrane and secretory proteins. Found to be tightly associated with membrane-bound ribosomes, either directly or through adaptor proteins.
source: Danio rerio (taxid: 7955)
 ID: COG0201
name: SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
score:99.50 (hhsearch)
coverage over query:
20-88
 ID: PF00344
score: 99.18 (hhsearch)
coverage over query:
21-91
 ID: GO:0030176 (confident match)
name: integral to endoplasmic reticulum membrane
 PDB ID: 2wwb chain A
(very confident match)
coverage over query:
16-130
psy8862 265 ID: P0AGA3 (confident match)
name: Protein translocase subunit SecY
def: The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
source: Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)
 ID: COG0201
name: SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
score:100.00 (hhsearch)
coverage over query:
4-257
 ID: PF00344
score: 100.00 (hhsearch)
coverage over query:
68-257
 ID: GO:0043022 (confident match)
name: ribosome binding
 PDB ID: 3j01 chain A
(very confident match)
coverage over query:
12-257
psy5332 287 ID: P19387 (very confident match)
name: DNA-directed RNA polymerase II subunit RPB3
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB3 is part of the core element with the central large cleft and the clamp element that moves to open and close the cleft.
source: Homo sapiens (taxid: 9606)
 ID: COG0202
name: RpoA DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Transcription]
score:99.94 (hhsearch)
coverage over query:
1-261
 ID: PF01000
score: 99.97 (hhsearch)
coverage over query:
6-133
 ID: GO:0005665 (very confident match)
name: DNA-directed RNA polymerase II, core complex
 PDB ID: 2pa8 chain D
(very confident match)
coverage over query:
1-86,101-221
psy12829 181 ID: P97760 (very confident match)
name: DNA-directed RNA polymerase II subunit RPB3
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB3 is part of the core element with the central large cleft and the clamp element that moves to open and close the cleft.
source: Mus musculus (taxid: 10090)
 ID: COG0202
name: RpoA DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
9-180
 ID: PF01000
score: 100.00 (hhsearch)
coverage over query:
50-177
 ID: GO:0005665 (very confident match)
name: DNA-directed RNA polymerase II, core complex
 PDB ID: 3h0g chain C
(very confident match)
coverage over query:
5-181
psy1865 152 ID: O15160 (confident match)
name: DNA-directed RNA polymerases I and III subunit RPAC1
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I and III which synthesize ribosomal RNA precursors and small RNAs, such as 5S rRNA and tRNAs, respectively. RPAC1 is part of the Pol core element with the central large cleft and probably a clamp element that moves to open and close the cleft.
source: Homo sapiens (taxid: 9606)
 ID: COG0202
name: RpoA DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Transcription]
score:99.67 (hhsearch)
coverage over query:
8-138
 ID: PF01000
score: 99.75 (hhsearch)
coverage over query:
8-104
 ID: GO:0005875 (confident match)
name: microtubule associated complex
 PDB ID: 1twf chain C
(very confident match)
coverage over query:
7-29,43-121
psy12830 94 ID: P97760 (portable match)
name: DNA-directed RNA polymerase II subunit RPB3
def: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB3 is part of the core element with the central large cleft and the clamp element that moves to open and close the cleft.
source: Mus musculus (taxid: 10090)
 ID: COG0202
name: RpoA DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Transcription]
score:99.04 (hhsearch)
coverage over query:
9-87
 ID: PF01193
score: 97.20 (hhsearch)
coverage over query:
19-42
 no hit PDB ID: 2pa8 chain D
(confident match)
coverage over query:
7-75
psy8861 550 ID: A6T3H9 (confident match)
name: 30S ribosomal protein S4
def: With S5 and S12 plays an important role in translational accuracy.
source: Janthinobacterium sp. (strain Marseille) (taxid: 375286)
 ID: COG0202
name: RpoA DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Transcription]
score:100.00 (hhsearch)
coverage over query:
199-437
 ID: PF01196
score: 100.00 (hhsearch)
coverage over query:
449-545
 ID: GO:0045947 (confident match)
name: negative regulation of translational initiation
 PDB ID: 3r8s chain N
(very confident match)
coverage over query:
430-548
psy14597 191 ID: Q5RCA3 (confident match)
name: 39S ribosomal protein L17, mitochondrial
def:
source: Pongo abelii (taxid: 9601)
 ID: COG0203
name: RplQ Ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
17-126
 ID: PF01196
score: 100.00 (hhsearch)
coverage over query:
36-126
 ID: GO:0005743 (confident match)
name: mitochondrial inner membrane
 PDB ID: 2cqm chain A
(very confident match)
coverage over query:
29-140
psy8441 234 ID: Q6IV84 (portable match)
name: Tafazzin
def: Some isoforms may be involved in cardiolipin metabolism.
source: Pan troglodytes (taxid: 9598)
 ID: COG0204
name: PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
score:99.37 (hhsearch)
coverage over query:
124-228
 ID: PF01553
score: 99.02 (hhsearch)
coverage over query:
143-225
 ID: GO:0032577 (confident match)
name: phosphatidylcholine:cardiolipin O-linoleoyltransferase activity
 PDB ID: 1iuq chain A
(portable match)
coverage over query:
126-223
psy12561 139 ID: O25903 (portable match)
name: 1-acyl-sn-glycerol-3-phosphate acyltransferase
def: Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating acyl moiety at the 2 position.
source: Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)
 ID: COG0204
name: PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
score:99.92 (hhsearch)
coverage over query:
2-138
 ID: PF01553
score: 99.85 (hhsearch)
coverage over query:
2-112
 ID: GO:0043231 (confident match)
name: intracellular membrane-bounded organelle
 PDB ID: 1iuq chain A
(confident match)
coverage over query:
2-139
psy6562 429 ID: Q5ZJD8 (portable match)
name: Transmembrane protein 68
def:
source: Gallus gallus (taxid: 9031)
 ID: COG0204
name: PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
score:99.44 (hhsearch)
coverage over query:
228-350
 ID: PF01553
score: 99.22 (hhsearch)
coverage over query:
242-343
 no hit PDB ID: 1iuq chain A
(portable match)
coverage over query:
219-299
psy4684 237 ID: Q7L5N7 (portable match)
name: Lysophosphatidylcholine acyltransferase 2
def: Possesses both acyltransferase and acetyltransferase activities. Activity is calcium-dependent. Involved in platelet-activating factor (PAF) biosynthesis by catalyzing the conversion of the PAF precursor, 1-O-alkyl-sn-glycero-3-phosphocholine (lyso-PAF) into 1-O-alkyl-2-acetyl-sn-glycero-3-phosphocholine (PAF). Also converts lyso-PAF to 1-alkyl-phosphatidylcholine (PC), a major component of cell membranes and a PAF precursor. Under resting conditions, acyltransferase activity is preferred. Upon acute inflammatory stimulus, acetyltransferase activity is enhanced and PAF synthesis increases.
source: Homo sapiens (taxid: 9606)
 ID: COG0204
name: PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
score:99.88 (hhsearch)
coverage over query:
52-184
 ID: PF01553
score: 99.68 (hhsearch)
coverage over query:
70-173
 no hit PDB ID: 1iuq chain A
(confident match)
coverage over query:
51-170
psy5379 341 ID: Q91YX5 (confident match)
name: Acyl-CoA:lysophosphatidylglycerol acyltransferase 1
def: Lysophoshatidylglycerol (LPG) specific acyltransferase that recognizes various acyl-CoAs and LPGs as substrates but demonstrates a clear preference for long chain saturated fatty acyl-CoAs and oleoyl-CoA as acyl donors. Prefers oleoyl-LPG over palmitoyl-LPG as an acyl receptor and oleoyl-CoA over lauroyl-CoA as an acyl donor.
source: Mus musculus (taxid: 10090)
 ID: COG0204
name: PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
score:99.30 (hhsearch)
coverage over query:
65-173
 ID: PF01553
score: 99.12 (hhsearch)
coverage over query:
66-170
 no hit PDB ID: 1iuq chain A
(portable match)
coverage over query:
73-174
psy15354 218 ID: A9ULG4 (portable match)
name: Ancient ubiquitous protein 1
def: May play a role in the translocation of terminally misfolded proteins from the endoplasmic reticulum lumen to the cytoplasm and their degradation by the proteasome.
source: Xenopus tropicalis (taxid: 8364)
 ID: COG0204
name: PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
score:94.44 (hhsearch)
coverage over query:
23-57
 ID: PF02845
score: 98.98 (hhsearch)
coverage over query:
122-161
 no hit PDB ID: 2ekf chain A
(confident match)
coverage over query:
115-167
psy12284 183 ID: Q08650 (portable match)
name: Diacylglycerol O-acyltransferase 1
def: Catalyzes the terminal and only committed step in triacylglycerol synthesis by using diacylglycerol and fatty acyl CoA as substrates. Required for storage lipid synthesis. May be involved in lipid particle synthesis from the endoplasmic reticulum and ergosterol biosynthesis. Also has monoacylglycerol acyltransferase (MGAT) activity, catalyzing the acyl-CoA-dependent esterification of monoacylglycerol to diacylglycerol.
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0204
name: PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
score:99.47 (hhsearch)
coverage over query:
3-80
 ID: PF03982
score: 100.00 (hhsearch)
coverage over query:
2-183
 ID: GO:0004144 (confident match)
name: diacylglycerol O-acyltransferase activity
 PDB ID: 1iuq chain A
(confident match)
coverage over query:
17-104,120-172
psy3418 119 ID: Q95JH2 (portable match)
name: 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha
def: Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating an acyl moiety at the sn-2 position of the glycerol backbone.
source: Bos taurus (taxid: 9913)
 ID: COG0204
name: PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
score:97.96 (hhsearch)
coverage over query:
19-106
 ID: PF03982
score: 95.24 (hhsearch)
coverage over query:
65-110
 ID: GO:0044424 (confident match)
name: intracellular part
 PDB ID: 1iuq chain A
(confident match)
coverage over query:
30-109
psy8442 130 ID: Q6IV77 (confident match)
name: Tafazzin
def: Some isoforms may be involved in cardiolipin metabolism.
source: Macaca mulatta (taxid: 9544)
 ID: COG0204
name: PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
score:97.95 (hhsearch)
coverage over query:
9-82
 ID: PF03982
score: 95.86 (hhsearch)
coverage over query:
30-109
 ID: GO:0044464 (confident match)
name: cell part
 PDB ID: 1iuq chain A
(portable match)
coverage over query:
12-125
psy6555 178 ID: Q5ZJD8 (confident match)
name: Transmembrane protein 68
def:
source: Gallus gallus (taxid: 9031)
 ID: COG0204
name: PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
score:99.63 (hhsearch)
coverage over query:
16-150
 ID: PF03982
score: 100.00 (hhsearch)
coverage over query:
13-174
 no hit PDB ID: 1iuq chain A
(confident match)
coverage over query:
16-150
psy5987 197 ID: Q9WUA3 (confident match)
name: 6-phosphofructokinase type C
def:
source: Mus musculus (taxid: 10090)
 ID: COG0205
name: PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-196
 ID: PF00365
score: 100.00 (hhsearch)
coverage over query:
2-196
 ID: GO:0003872 (very confident match)
name: 6-phosphofructokinase activity
 PDB ID: 3o8l chain A
(very confident match)
coverage over query:
2-196
psy5985 153 ID: P17858 (confident match)
name: 6-phosphofructokinase, liver type
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0205
name: PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-141
 ID: PF00365
score: 100.00 (hhsearch)
coverage over query:
1-142
 ID: GO:0030388 (confident match)
name: fructose 1,6-bisphosphate metabolic process
 PDB ID: 3o8l chain A
(very confident match)
coverage over query:
1-142
psy5988 68 ID: Q9WUA3 (confident match)
name: 6-phosphofructokinase type C
def:
source: Mus musculus (taxid: 10090)
 ID: COG0205
name: PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
score:99.69 (hhsearch)
coverage over query:
14-67
 ID: PF00365
score: 99.62 (hhsearch)
coverage over query:
14-67
 ID: GO:0046835 (confident match)
name: carbohydrate phosphorylation
 PDB ID: 3o8o chain A
(very confident match)
coverage over query:
9-68
psy5984 512 ID: P00511 (confident match)
name: 6-phosphofructokinase, muscle type
def:
source: Oryctolagus cuniculus (taxid: 9986)
 ID: COG0205
name: PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
score:99.97 (hhsearch)
coverage over query:
323-493
 ID: PF00365
score: 99.97 (hhsearch)
coverage over query:
323-492
 ID: GO:0070061 (confident match)
name: fructose binding
 PDB ID: 3o8l chain A
(very confident match)
coverage over query:
1-16,27-360,371-511
psy2355 452 ID: P45352 (confident match)
name: Thymidylate synthase
def: Contributes to the de novo mitochondrial thymidylate biosynthesis pathway.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0207
name: ThyA Thymidylate synthase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
74-314
 ID: PF00303
score: 100.00 (hhsearch)
coverage over query:
74-333
 ID: GO:0006231 (confident match)
name: dTMP biosynthetic process
 PDB ID: 2zkr chain q
(very confident match)
coverage over query:
294-452
psy2405 264 ID: Q8ZHV1 (very confident match)
name: Thymidylate synthase
def: Provides the sole de novo source of dTMP for DNA biosynthesis.
source: Yersinia pestis (taxid: 632)
 ID: COG0207
name: ThyA Thymidylate synthase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-264
 ID: PF00303
score: 100.00 (hhsearch)
coverage over query:
1-264
 ID: GO:0006231 (very confident match)
name: dTMP biosynthetic process
 PDB ID: 3ix6 chain A
(very confident match)
coverage over query:
1-264
psy8868 355 ID: Q9PL92 (very confident match)
name: Ribonucleoside-diphosphate reductase subunit beta
def: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
source: Chlamydia muridarum (strain MoPn / Nigg) (taxid: 243161)
 ID: COG0208
name: NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
15-352
 ID: PF00268
score: 100.00 (hhsearch)
coverage over query:
34-327
 ID: GO:0004748 (confident match)
name: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
 PDB ID: 1syy chain A
(very confident match)
coverage over query:
16-354
psy8867 355 ID: Q9PL92 (very confident match)
name: Ribonucleoside-diphosphate reductase subunit beta
def: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
source: Chlamydia muridarum (strain MoPn / Nigg) (taxid: 243161)
 ID: COG0208
name: NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
15-352
 ID: PF00268
score: 100.00 (hhsearch)
coverage over query:
34-327
 ID: GO:0009265 (confident match)
name: 2'-deoxyribonucleotide biosynthetic process
 PDB ID: 1syy chain A
(very confident match)
coverage over query:
16-354
psy7988 73 ID: Q5R9G0 (confident match)
name: Ribonucleoside-diphosphate reductase subunit M2 B
def: Plays a pivotal role in cell survival by repairing damaged DNA in a p53/TP53-dependent manner. Supplies deoxyribonucleotides for DNA repair in cells arrested at G1 or G2. Contains an iron-tyrosyl free radical center required for catalysis. Forms an active ribonucleotide reductase (RNR) complex with RRM1 which is expressed both in resting and proliferating cells in response to DNA damage.
source: Pongo abelii (taxid: 9601)
 ID: COG0208
name: NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
score:99.11 (hhsearch)
coverage over query:
14-60
 ID: PF00268
score: 96.46 (hhsearch)
coverage over query:
14-35
 ID: GO:0055114 (confident match)
name: oxidation-reduction process
 PDB ID: 1jk0 chain A
(very confident match)
coverage over query:
14-73
psy4803 235 ID: Q9LSD0 (confident match)
name: Ribonucleoside-diphosphate reductase small chain C
def: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0208
name: NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
82-230
 ID: PF00268
score: 99.94 (hhsearch)
coverage over query:
3-197
 ID: GO:0055114 (confident match)
name: oxidation-reduction process
 PDB ID: 1jk0 chain A
(very confident match)
coverage over query:
3-66,82-235
psy4797 333 ID: Q4KLN6 (confident match)
name: Ribonucleoside-diphosphate reductase subunit M2
def: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity). Inhibits Wnt signaling.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0208
name: NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
92-259
 ID: PF00268
score: 100.00 (hhsearch)
coverage over query:
91-259
 no hit PDB ID: 3olj chain A
(very confident match)
coverage over query:
87-259
psy15804 193 ID: P21524 (confident match)
name: Ribonucleoside-diphosphate reductase large chain 1
def: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0209
name: NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
score:99.96 (hhsearch)
coverage over query:
5-191
 ID: PF00317
score: 99.91 (hhsearch)
coverage over query:
108-181
 ID: GO:0009263 (confident match)
name: deoxyribonucleotide biosynthetic process
 PDB ID: 3hnc chain A
(very confident match)
coverage over query:
2-191
psy1689 998 ID: P07742 (confident match)
name: Ribonucleoside-diphosphate reductase large subunit
def: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
source: Mus musculus (taxid: 10090)
 ID: COG0209
name: NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
71-552
 ID: PF02867
score: 100.00 (hhsearch)
coverage over query:
69-538
 ID: GO:0005635 (confident match)
name: nuclear envelope
 PDB ID: 3hnc chain A
(very confident match)
coverage over query:
586-665,779-998
psy8865 749 ID: Q9SJ20 (confident match)
name: Ribonucleoside-diphosphate reductase large subunit
def: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. R1 contains the binding sites for both substrates and allosteric effectors and carries out the actual reduction of the ribonucleotide.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0209
name: NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-703
 ID: PF02867
score: 100.00 (hhsearch)
coverage over query:
153-690
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2wgh chain A
(very confident match)
coverage over query:
8-512,525-696
psy8864 749 ID: Q9SJ20 (confident match)
name: Ribonucleoside-diphosphate reductase large subunit
def: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. R1 contains the binding sites for both substrates and allosteric effectors and carries out the actual reduction of the ribonucleotide.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0209
name: NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
2-703
 ID: PF02867
score: 100.00 (hhsearch)
coverage over query:
153-690
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2wgh chain A
(very confident match)
coverage over query:
8-512,525-696
psy15805 150 ID: P21524 (portable match)
name: Ribonucleoside-diphosphate reductase large chain 1
def: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0209
name: NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
score:99.05 (hhsearch)
coverage over query:
6-135
 ID: PF02867
score: 99.86 (hhsearch)
coverage over query:
18-139
 no hit PDB ID: 2wgh chain A
(very confident match)
coverage over query:
7-128
psy12659 1051 ID: Q8CFQ3 (portable match)
name: Intron-binding protein aquarius
def: Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre-mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing.
source: Mus musculus (taxid: 10090)
 ID: COG0210
name: UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
score:97.76 (hhsearch)
coverage over query:
177-246
 ID: PF13086
score: 99.85 (hhsearch)
coverage over query:
177-270
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 4b3f chain X
(very confident match)
coverage over query:
114-270
psy7634 206 ID: Q9P0M9 (confident match)
name: 39S ribosomal protein L27, mitochondrial
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0211
name: RpmA Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
25-137
 ID: PF01016
score: 100.00 (hhsearch)
coverage over query:
26-133
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2ftc chain O
(very confident match)
coverage over query:
26-99
psy17389 259 ID: P80405 (confident match)
name: 5-formyltetrahydrofolate cyclo-ligase
def: Contributes to tetrahydrofolate metabolism. Helps regulate carbon flow through the folate-dependent one-carbon metabolic network that supplies carbon for the biosynthesis of purines, thymidine and amino acids.
source: Oryctolagus cuniculus (taxid: 9986)
 ID: COG0212
name: 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
72-258
 ID: PF01812
score: 100.00 (hhsearch)
coverage over query:
71-255
 no hit PDB ID: 1sou chain A
(very confident match)
coverage over query:
70-129,151-258
psy1330 221 ID: C3MBH0 (confident match)
name: Thymidine phosphorylase
def: The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis.
source: Rhizobium sp. (strain NGR234) (taxid: 394)
 ID: COG0213
name: DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-221
 ID: PF00591
score: 100.00 (hhsearch)
coverage over query:
78-210
 ID: GO:0016763 (confident match)
name: transferase activity, transferring pentosyl groups
 PDB ID: 2dsj chain A
(very confident match)
coverage over query:
3-221
psy11866 255 ID: Q5F408 (confident match)
name: Cysteine--tRNA ligase, cytoplasmic
def:
source: Gallus gallus (taxid: 9031)
 ID: COG0215
name: CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-255
 ID: PF01406
score: 99.94 (hhsearch)
coverage over query:
2-78
 ID: GO:0005524 (confident match)
name: ATP binding
 PDB ID: 1li5 chain A
(very confident match)
coverage over query:
2-255
psy14486 472 ID: Q60BG8 (very confident match)
name: Cysteine--tRNA ligase
def:
source: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) (taxid: 243233)
 ID: COG0215
name: CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
3-472
 ID: PF01406
score: 100.00 (hhsearch)
coverage over query:
17-322
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3tqo chain A
(very confident match)
coverage over query:
1-472
psy14487 472 ID: Q60BG8 (very confident match)
name: Cysteine--tRNA ligase
def:
source: Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) (taxid: 243233)
 ID: COG0215
name: CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
3-472
 ID: PF01406
score: 100.00 (hhsearch)
coverage over query:
17-322
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1li5 chain A
(very confident match)
coverage over query:
4-472
psy13464 515 ID: Q5F408 (portable match)
name: Cysteine--tRNA ligase, cytoplasmic
def:
source: Gallus gallus (taxid: 9031)
 ID: COG0215
name: CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
31-494
 ID: PF01406
score: 100.00 (hhsearch)
coverage over query:
45-495
 no hit PDB ID: 3tqo chain A
(very confident match)
coverage over query:
301-465
psy6851 948 ID: Q7KN90 (portable match)
name: Cysteine--tRNA ligase, cytoplasmic
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0215
name: CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
406-875
 ID: PF01406
score: 100.00 (hhsearch)
coverage over query:
424-875
 no hit PDB ID: 1li5 chain A
(very confident match)
coverage over query:
407-476,487-487,624-685
,717-718,730-739
,752-752,772-875
psy4479 135 ID: Q9H3J6 (confident match)
name: Probable peptide chain release factor C12orf65, mitochondrial
def: May act as a codon-independent translation release factor that has lost all stop codon specificity and directs the termination of translation in mitochondrion.
source: Homo sapiens (taxid: 9606)
 ID: COG0216
name: PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
5-94
 ID: PF00472
score: 99.97 (hhsearch)
coverage over query:
21-93
 ID: GO:0003747 (confident match)
name: translation release factor activity
 PDB ID: 2rsm chain A
(very confident match)
coverage over query:
7-98
psy2492 162 ID: Q9H3J6 (confident match)
name: Probable peptide chain release factor C12orf65, mitochondrial
def: May act as a codon-independent translation release factor that has lost all stop codon specificity and directs the termination of translation in mitochondrion.
source: Homo sapiens (taxid: 9606)
 ID: COG0216
name: PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
2-119
 ID: PF00472
score: 99.96 (hhsearch)
coverage over query:
47-118
 ID: GO:0003747 (confident match)
name: translation release factor activity
 PDB ID: 2rsm chain A
(very confident match)
coverage over query:
28-123
psy8866 278 ID: A6SXF4 (very confident match)
name: Peptide chain release factor 2
def: Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
source: Janthinobacterium sp. (strain Marseille) (taxid: 375286)
 ID: COG0216
name: PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-275
 ID: PF00472
score: 100.00 (hhsearch)
coverage over query:
135-243
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 1gqe chain A
(very confident match)
coverage over query:
1-270
psy15210 278 ID: A6SXF4 (very confident match)
name: Peptide chain release factor 2
def: Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
source: Janthinobacterium sp. (strain Marseille) (taxid: 375286)
 ID: COG0216
name: PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-275
 ID: PF00472
score: 100.00 (hhsearch)
coverage over query:
135-243
 ID: GO:0005618 (confident match)
name: cell wall
 PDB ID: 1gqe chain A
(very confident match)
coverage over query:
1-270
psy1690 218 ID: Q0BUJ8 (confident match)
name: Peptide chain release factor 1
def: Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
source: Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) (taxid: 391165)
 ID: COG0216
name: PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-217
 ID: PF00472
score: 99.98 (hhsearch)
coverage over query:
28-179
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2b3t chain B
(very confident match)
coverage over query:
1-124,152-156,167-217
psy14432 189 ID: D2HD32 (confident match)
name: Peptidyl-tRNA hydrolase ICT1, mitochondrial
def: Essential peptidyl-tRNA hydrolase component of the mitochondrial large ribosomal subunit. Acts as a codon-independent translation release factor that has lost all stop codon specificity and directs the termination of translation in mitochondrion, possibly in case of abortive elongation. May be involved in the hydrolysis of peptidyl-tRNAs that have been prematurely terminated and thus in the recycling of stalled mitochondrial ribosomes.
source: Ailuropoda melanoleuca (taxid: 9646)
 ID: COG0216
name: PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-173
 ID: PF00472
score: 99.94 (hhsearch)
coverage over query:
78-172
 no hit PDB ID: 1j26 chain A
(very confident match)
coverage over query:
81-175
psy2490 64 ID: Q53915 (confident match)
name: Peptide chain release factor 2
def: Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
source: Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226)
 ID: COG0216
name: PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
score:99.94 (hhsearch)
coverage over query:
4-64
 ID: PF00472
score: 99.85 (hhsearch)
coverage over query:
22-64
 no hit PDB ID: 1gqe chain A
(very confident match)
coverage over query:
4-64
psy2394 570 ID: Q62DF3 (confident match)
name: Peptide chain release factor 1
def: Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
source: Burkholderia mallei (strain ATCC 23344) (taxid: 243160)
 ID: COG0216
name: PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-314
 ID: PF03462
score: 99.97 (hhsearch)
coverage over query:
70-178
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2b3t chain B
(very confident match)
coverage over query:
1-314
psy2395 570 ID: Q62DF3 (confident match)
name: Peptide chain release factor 1
def: Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
source: Burkholderia mallei (strain ATCC 23344) (taxid: 243160)
 ID: COG0216
name: PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-314
 ID: PF03462
score: 99.97 (hhsearch)
coverage over query:
70-178
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 1rq0 chain A
(very confident match)
coverage over query:
13-314
psy8853 242 ID: B2U8Z2 (very confident match)
name: Probable transcriptional regulatory protein Rpic_2388
def:
source: Ralstonia pickettii (strain 12J) (taxid: 402626)
 ID: COG0217
name: Uncharacterized conserved protein [Function unknown]
score:100.00 (hhsearch)
coverage over query:
1-241
 ID: PF01709
score: 100.00 (hhsearch)
coverage over query:
5-239
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 1lfp chain A
(very confident match)
coverage over query:
1-242
psy6519 208 ID: A5G9Y5 (portable match)
name: Probable transcriptional regulatory protein Gura_1416
def:
source: Geobacter uraniireducens (strain Rf4) (taxid: 351605)
 ID: COG0217
name: Uncharacterized conserved protein [Function unknown]
score:100.00 (hhsearch)
coverage over query:
27-186
 ID: PF01709
score: 100.00 (hhsearch)
coverage over query:
31-185
 no hit PDB ID: 1lfp chain A
(very confident match)
coverage over query:
27-184
psy6521 83 ID: Q4A7P8 (confident match)
name: Probable transcriptional regulatory protein MHP7448_0474
def:
source: Mycoplasma hyopneumoniae (strain 7448) (taxid: 262722)
 ID: COG0217
name: Uncharacterized conserved protein [Function unknown]
score:99.78 (hhsearch)
coverage over query:
37-81
 ID: PF01709
score: 99.55 (hhsearch)
coverage over query:
41-81
 no hit PDB ID: 1kon chain A
(very confident match)
coverage over query:
35-81
psy13086 169 ID: Q9Z120 (confident match)
name: tRNA (guanine-N(7)-)-methyltransferase
def: Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
source: Mus musculus (taxid: 10090)
 ID: COG0220
name: Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
score:100.00 (hhsearch)
coverage over query:
2-167
 ID: PF02390
score: 100.00 (hhsearch)
coverage over query:
1-166
 ID: GO:0043527 (confident match)
name: tRNA methyltransferase complex
 PDB ID: 3ckk chain A
(very confident match)
coverage over query:
1-168
psy13087 170 ID: Q12009 (confident match)
name: tRNA (guanine-N(7)-)-methyltransferase
def: Methyltransferase that catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA, a modification required to maintain stability of tRNAs; its absence resulting in tRNA decay. Both the D-stem and T-stem structures of tRNAs are required for efficient methyltransferase activity.
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0220
name: Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
score:99.73 (hhsearch)
coverage over query:
11-144
 ID: PF02390
score: 99.71 (hhsearch)
coverage over query:
37-144
 no hit PDB ID: 2vdv chain E
(very confident match)
coverage over query:
10-143
psy300 451 ID: O77460 (confident match)
name: Inorganic pyrophosphatase
def: Component of NURF (nucleosome remodeling factor), a complex which catalyzes ATP-dependent nucleosome sliding and facilitates transcription of chromatin. NURF is required for homeotic gene expression, proper larval blood cell development, normal male X chromosome morphology, ecdysteroid signaling and metamorphosis. Nurf-38 may have adapted to deliver pyrophosphatase to chromatin to assist in replication or transcription by efficient removal of the inhibitory metabolite.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0221
name: Ppa Inorganic pyrophosphatase [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
165-363
 ID: PF00719
score: 100.00 (hhsearch)
coverage over query:
182-363
 ID: GO:0005773 (confident match)
name: vacuole
 PDB ID: 3q46 chain A
(very confident match)
coverage over query:
164-199,211-238,251-366
psy295 326 ID: P37980 (confident match)
name: Inorganic pyrophosphatase
def:
source: Bos taurus (taxid: 9913)
 ID: COG0221
name: Ppa Inorganic pyrophosphatase [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
144-313
 ID: PF00719
score: 100.00 (hhsearch)
coverage over query:
147-313
 no hit PDB ID: 3q46 chain A
(very confident match)
coverage over query:
140-318
psy4492 96 ID: Q7YR75 (confident match)
name: 39S ribosomal protein L12, mitochondrial
def:
source: Bos taurus (taxid: 9913)
 ID: COG0222
name: RplL Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]
score:99.97 (hhsearch)
coverage over query:
22-96
 ID: PF00542
score: 99.93 (hhsearch)
coverage over query:
27-96
 ID: GO:0044699 (confident match)
name: single-organism process
 PDB ID: 2ftc chain E
(very confident match)
coverage over query:
20-96
psy4496 228 ID: Q5ZMJ9 (portable match)
name: Serine/arginine repetitive matrix protein 1
def: Involved in pre-mRNA splicing and processing events.
source: Gallus gallus (taxid: 9031)
 ID: COG0222
name: RplL Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]
score:99.11 (hhsearch)
coverage over query:
162-216
 ID: PF01480
score: 99.72 (hhsearch)
coverage over query:
25-85
 no hit PDB ID: 2ftc chain E
(very confident match)
coverage over query:
161-217
psy16774 124 ID: Q8K009 (confident match)
name: Mitochondrial 10-formyltetrahydrofolate dehydrogenase
def:
source: Mus musculus (taxid: 10090)
 ID: COG0223
name: Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
score:99.34 (hhsearch)
coverage over query:
62-113
 ID: PF00551
score: 97.89 (hhsearch)
coverage over query:
62-99
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2bw0 chain A
(very confident match)
coverage over query:
41-112
psy16773 124 ID: Q8K009 (confident match)
name: Mitochondrial 10-formyltetrahydrofolate dehydrogenase
def:
source: Mus musculus (taxid: 10090)
 ID: COG0223
name: Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
score:99.34 (hhsearch)
coverage over query:
62-113
 ID: PF00551
score: 97.89 (hhsearch)
coverage over query:
62-99
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2bw0 chain A
(very confident match)
coverage over query:
41-112
psy17704 412 ID: B6J655 (portable match)
name: Methionyl-tRNA formyltransferase
def: Modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by: (I) promoting its recognition by IF2 and (II) impairing its binding to EFTu-GTP.
source: Coxiella burnetii (strain CbuK_Q154) (taxid: 434924)
 ID: COG0223
name: Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
6-388
 ID: PF00551
score: 100.00 (hhsearch)
coverage over query:
7-149
 no hit PDB ID: 3tqr chain A
(very confident match)
coverage over query:
5-158
psy5230 258 ID: B2VK94 (confident match)
name: Methionyl-tRNA formyltransferase
def: Modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by: (I) promoting its recognition by IF2 and (II) impairing its binding to EFTu-GTP.
source: Erwinia tasmaniensis (strain DSM 17950 / Et1/99) (taxid: 338565)
 ID: COG0223
name: Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-254
 ID: PF02911
score: 99.96 (hhsearch)
coverage over query:
145-249
 no hit PDB ID: 3q0i chain A
(very confident match)
coverage over query:
1-257
psy17706 154 ID: Q9D799 (portable match)
name: Methionyl-tRNA formyltransferase, mitochondrial
def: Formylates methionyl-tRNA in mitochondria. A single tRNA(Met) gene gives rise to both an initiator and an elongator species via an unknown mechanism.
source: Mus musculus (taxid: 10090)
 ID: COG0223
name: Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
score:99.84 (hhsearch)
coverage over query:
7-95
 ID: PF02911
score: 99.90 (hhsearch)
coverage over query:
8-94
 no hit PDB ID: 2bw0 chain A
(confident match)
coverage over query:
8-91
psy9628 112 ID: O01666 (confident match)
name: ATP synthase subunit gamma, mitochondrial
def: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0224
name: AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
score:99.78 (hhsearch)
coverage over query:
8-93
 ID: PF00231
score: 99.62 (hhsearch)
coverage over query:
8-90
 ID: GO:0005811 (confident match)
name: lipid particle
 PDB ID: 2xok chain G
(very confident match)
coverage over query:
16-92
psy2901 265 ID: Q5P4E3 (confident match)
name: ATP synthase gamma chain
def: Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
source: Aromatoleum aromaticum (strain EbN1) (taxid: 76114)
 ID: COG0224
name: AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
1-265
 ID: PF00231
score: 100.00 (hhsearch)
coverage over query:
1-265
 ID: GO:0015986 (confident match)
name: ATP synthesis coupled proton transport
 PDB ID: 2xok chain G
(very confident match)
coverage over query:
1-265
psy2900 265 ID: Q5P4E3 (confident match)
name: ATP synthase gamma chain
def: Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
source: Aromatoleum aromaticum (strain EbN1) (taxid: 76114)
 ID: COG0224
name: AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
1-265
 ID: PF00231
score: 100.00 (hhsearch)
coverage over query:
1-265
 ID: GO:0015986 (confident match)
name: ATP synthesis coupled proton transport
 PDB ID: 2xok chain G
(very confident match)
coverage over query:
1-265
psy9619 407 ID: Q5RBS9 (confident match)
name: ATP synthase subunit gamma, mitochondrial
def: Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(1) domain and the central stalk which is part of the complex rotary element. The gamma subunit protrudes into the catalytic domain formed of alpha(3)beta(3). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
source: Pongo abelii (taxid: 9601)
 ID: COG0224
name: AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
24-407
 ID: PF00231
score: 100.00 (hhsearch)
coverage over query:
21-407
 ID: GO:0070013 (confident match)
name: intracellular organelle lumen
 PDB ID: 2xok chain G
(very confident match)
coverage over query:
13-172,286-407
psy9119 250 ID: A4TRL2 (portable match)
name: Peptide methionine sulfoxide reductase MsrA
def: Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
source: Yersinia pestis (strain Pestoides F) (taxid: 386656)
 ID: COG0225
name: MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
3-122
 ID: PF01625
score: 100.00 (hhsearch)
coverage over query:
2-119
 ID: GO:0005737 (confident match)
name: cytoplasm
 PDB ID: 3pim chain A
(very confident match)
coverage over query:
4-118
psy9124 213 ID: A1TH24 (portable match)
name: Peptide methionine sulfoxide reductase MsrA
def: Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
source: Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) (taxid: 350058)
 ID: COG0225
name: MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
11-151
 ID: PF01625
score: 100.00 (hhsearch)
coverage over query:
15-148
 no hit PDB ID: 3bqh chain A
(very confident match)
coverage over query:
13-151
psy3482 279 ID: Q9VMX0 (confident match)
name: 39S ribosomal protein L28, mitochondrial
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0227
name: RpmB Ribosomal protein L28 [Translation, ribosomal structure and biogenesis]
score:99.87 (hhsearch)
coverage over query:
81-155
 ID: PF00830
score: 99.81 (hhsearch)
coverage over query:
83-145
 ID: GO:0005761 (confident match)
name: mitochondrial ribosome
 PDB ID: 3bbo chain Y
(confident match)
coverage over query:
76-154
psy14541 103 ID: Q9V6Y3 (confident match)
name: Probable 28S ribosomal protein S16, mitochondrial
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0228
name: RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
score:99.89 (hhsearch)
coverage over query:
1-56
 ID: PF00886
score: 99.81 (hhsearch)
coverage over query:
1-45
 ID: GO:0043231 (confident match)
name: intracellular membrane-bounded organelle
 PDB ID: 3bbn chain P
(very confident match)
coverage over query:
1-64
psy11684 198 ID: Q2RV59 (portable match)
name: 30S ribosomal protein S16
def:
source: Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)
 ID: COG0228
name: RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
score:99.97 (hhsearch)
coverage over query:
44-171
 ID: PF00886
score: 99.94 (hhsearch)
coverage over query:
51-160
 no hit PDB ID: 3bbn chain P
(very confident match)
coverage over query:
44-67,115-184
psy12346 107 ID: Q3Z2B6 (confident match)
name: Peptide methionine sulfoxide reductase MsrB
def:
source: Shigella sonnei (strain Ss046) (taxid: 300269)
 ID: COG0229
name: Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
10-106
 ID: PF01641
score: 100.00 (hhsearch)
coverage over query:
14-106
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2l1u chain A
(very confident match)
coverage over query:
15-106
psy4120 95 ID: Q48FR2 (confident match)
name: Peptide methionine sulfoxide reductase MsrB
def:
source: Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) (taxid: 264730)
 ID: COG0229
name: Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
10-93
 ID: PF01641
score: 100.00 (hhsearch)
coverage over query:
14-92
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3hcg chain A
(very confident match)
coverage over query:
10-93
psy17065 150 ID: Q09121 (very confident match)
name: Eukaryotic translation initiation factor 5A-1
def: mRNA-binding protein involved in translation elongation. Has an important function at the level of mRNA turnover, probably acting downstream of decapping. Involved in actin dynamics and cell cycle progression, mRNA decay and probably in a pathway involved in stress response and maintenance of cell wall integrity. Functions as a regulator of apoptosis. Mediates effects of polyamines on neuronal process extension and survival. May play an important role in brain development and function, and in skeletal muscle stem cell differentiation.
source: Gallus gallus (taxid: 9031)
 ID: COG0231
name: Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
20-147
 ID: PF08207
score: 99.86 (hhsearch)
coverage over query:
23-81
 ID: GO:0008284 (very confident match)
name: positive regulation of cell proliferation
 PDB ID: 3cpf chain A
(very confident match)
coverage over query:
16-150
psy14371 286 ID: Q9VJ79 (portable match)
name: Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11
def: Plays a role in signal transduction by regulating the intracellular concentration of cyclic nucleotides cAMP and cGMP. Catalyzes the hydrolysis of both cAMP and cGMP to 5'-AMP and 5'-GMP, respectively.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0232
name: Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
score:91.98 (hhsearch)
coverage over query:
76-134
 ID: PF00233
score: 100.00 (hhsearch)
coverage over query:
77-264
 no hit PDB ID: 3ibj chain A
(very confident match)
coverage over query:
2-179,210-273
psy9115 96 no hit ID: COG0233
name: Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
score:99.95 (hhsearch)
coverage over query:
15-89
 ID: PF01765
score: 99.86 (hhsearch)
coverage over query:
15-89
 no hit PDB ID: 4gfq chain A
(confident match)
coverage over query:
14-89
psy9114 98 no hit ID: COG0233
name: Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-98
 ID: PF01765
score: 99.97 (hhsearch)
coverage over query:
12-98
 no hit PDB ID: 1wih chain A
(very confident match)
coverage over query:
23-98
psy12951 111 ID: A5G9I1 (very confident match)
name: 10 kDa chaperonin
def: Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.
source: Geobacter uraniireducens (strain Rf4) (taxid: 351605)
 ID: COG0234
name: GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
14-109
 ID: PF00166
score: 100.00 (hhsearch)
coverage over query:
15-107
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1we3 chain O
(very confident match)
coverage over query:
13-108
psy12488 91 ID: Q4FPA6 (confident match)
name: 10 kDa chaperonin
def: Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.
source: Pelagibacter ubique (strain HTCC1062) (taxid: 335992)
 ID: COG0234
name: GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
6-89
 ID: PF00166
score: 99.96 (hhsearch)
coverage over query:
7-87
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1we3 chain O
(very confident match)
coverage over query:
6-88
psy13497 262 ID: Q9WVQ5 (very confident match)
name: Probable methylthioribulose-1-phosphate dehydratase
def: Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Has an anti-apoptotic function and prevents muscle ischemic damage. Inhibits the cytochrome c-dependent and APAF1-mediated cell death.
source: Mus musculus (taxid: 10090)
 ID: COG0235
name: AraD Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
12-259
 ID: PF00596
score: 100.00 (hhsearch)
coverage over query:
19-249
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2irp chain A
(very confident match)
coverage over query:
15-127,162-255
psy14071 414 ID: Q63028 (confident match)
name: Alpha-adducin
def: Membrane-cytoskeleton-associated protein that promotes the assembly of the spectrin-actin network. Binds to calmodulin.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0235
name: AraD Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
80-290
 ID: PF00596
score: 100.00 (hhsearch)
coverage over query:
87-269
 ID: GO:0042221 (confident match)
name: response to chemical stimulus
 PDB ID: 3ocr chain A
(very confident match)
coverage over query:
77-299,322-344
psy14077 296 ID: Q02645 (confident match)
name: Protein hu-li tai shao
def: Required for assembling actin at ring canals in developing egg chambers. Probably interacts with other developmental proteins involved in nurse cell/oocyte transport through the ring canals.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0235
name: AraD Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases [Carbohydrate transport and metabolism]
score:99.92 (hhsearch)
coverage over query:
1-173
 ID: PF00596
score: 99.88 (hhsearch)
coverage over query:
1-158
 no hit PDB ID: 3ocr chain A
(very confident match)
coverage over query:
1-179
psy11967 539 ID: P47967 (portable match)
name: Galectin-5
def: May function in erythrocyte differentiation.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0236
name: AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:97.96 (hhsearch)
coverage over query:
352-419
 ID: PF00337
score: 99.98 (hhsearch)
coverage over query:
104-235
 ID: GO:0005737 (confident match)
name: cytoplasm
 PDB ID: 2wsu chain A
(very confident match)
coverage over query:
100-243,257-257,285-291
,332-332,380-380
,417-421,432-536
psy14287 290 no hit ID: COG0236
name: AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:97.79 (hhsearch)
coverage over query:
64-135
 ID: PF00550
score: 99.43 (hhsearch)
coverage over query:
67-133
 no hit PDB ID: 4i4d chain A
(confident match)
coverage over query:
64-135
psy17138 212 ID: O34932 (confident match)
name: Dephospho-CoA kinase
def: Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A.
source: Bacillus subtilis (strain 168) (taxid: 224308)
 ID: COG0237
name: CoaE Dephospho-CoA kinase [Coenzyme metabolism]
score:99.95 (hhsearch)
coverage over query:
76-211
 ID: PF01121
score: 99.97 (hhsearch)
coverage over query:
77-211
 ID: GO:0004140 (confident match)
name: dephospho-CoA kinase activity
 PDB ID: 2f6r chain A
(very confident match)
coverage over query:
13-211
psy1551 190 ID: Q767K8 (confident match)
name: 28S ribosomal protein S18b, mitochondrial
def:
source: Sus scrofa (taxid: 9823)
 ID: COG0238
name: RpsR Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]
score:99.92 (hhsearch)
coverage over query:
107-171
 ID: PF01084
score: 99.88 (hhsearch)
coverage over query:
119-171
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2vqe chain R
(confident match)
coverage over query:
108-178
psy6417 194 ID: P57741 (confident match)
name: Probable prefoldin subunit 3
def: Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0238
name: RpsR Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]
score:99.03 (hhsearch)
coverage over query:
152-192
 ID: PF02996
score: 99.42 (hhsearch)
coverage over query:
18-91
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3i1m chain R
(confident match)
coverage over query:
153-192
psy14065 492 ID: Q27928 (very confident match)
name: Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic
def:
source: Drosophila pseudoobscura pseudoobscura (taxid: 46245)
 ID: COG0240
name: GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
1-310
 ID: PF07479
score: 100.00 (hhsearch)
coverage over query:
156-305
 ID: GO:0030018 (very confident match)
name: Z disc
 PDB ID: 1x0v chain A
(very confident match)
coverage over query:
1-311
psy4598 369 ID: O13911 (confident match)
name: Bifunctional polynucleotide phosphatase/kinase
def: Catalyzes the phosphorylation of DNA at 5'-hydroxyl termini and can dephosphorylate its 3'-phosphate termini. Has a role in the repair of breaks in single stranded DNA.
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0241
name: HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
score:99.97 (hhsearch)
coverage over query:
25-180
 ID: PF08645
score: 100.00 (hhsearch)
coverage over query:
26-187
 ID: GO:0003690 (confident match)
name: double-stranded DNA binding
 PDB ID: 3zvl chain A
(very confident match)
coverage over query:
3-214,232-235,266-368
psy2880 166 ID: Q1QET1 (very confident match)
name: Peptide deformylase
def: Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
source: Psychrobacter cryohalolentis (strain K5) (taxid: 335284)
 ID: COG0242
name: Def N-formylmethionyl-tRNA deformylase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-164
 ID: PF01327
score: 100.00 (hhsearch)
coverage over query:
3-153
 ID: GO:0035601 (confident match)
name: protein deacylation
 PDB ID: 3u04 chain A
(very confident match)
coverage over query:
1-165
psy14392 164 ID: Q7W0Q0 (confident match)
name: Peptide deformylase 1
def: Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
source: Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) (taxid: 257313)
 ID: COG0242
name: Def N-formylmethionyl-tRNA deformylase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-150
 ID: PF01327
score: 100.00 (hhsearch)
coverage over query:
1-141
 ID: GO:0035601 (confident match)
name: protein deacylation
 PDB ID: 3svj chain P
(very confident match)
coverage over query:
1-142
psy17475 346 ID: P19889 (very confident match)
name: 60S acidic ribosomal protein P0
def: Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0244
name: RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
score:99.92 (hhsearch)
coverage over query:
1-177
 ID: PF00466
score: 99.72 (hhsearch)
coverage over query:
2-88
 ID: GO:0005811 (very confident match)
name: lipid particle
 no hit
psy15723 243 ID: A4FV84 (very confident match)
name: mRNA turnover protein 4 homolog
def: Involved in mRNA turnover and ribosome assembly.
source: Bos taurus (taxid: 9913)
 ID: COG0244
name: RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
score:99.97 (hhsearch)
coverage over query:
19-211
 ID: PF00466
score: 99.89 (hhsearch)
coverage over query:
18-120
 ID: GO:0031965 (very confident match)
name: nuclear membrane
 no hit
psy9196 362 ID: Q29NV5 (confident match)
name: 39S ribosomal protein L10, mitochondrial
def:
source: Drosophila pseudoobscura pseudoobscura (taxid: 46245)
 ID: COG0244
name: RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
77-241
 ID: PF00466
score: 99.81 (hhsearch)
coverage over query:
77-170
 no hit PDB ID: 2j01 chain J
(confident match)
coverage over query:
78-241
psy5289 813 ID: O24617 (confident match)
name: DNA mismatch repair protein MSH2
def: Involved in postreplication mismatch repair. Binds specifically to DNA containing mismatched nucleotides thus providing a target for the excision repair processes characteristic of postreplication mismatch repair.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0249
name: MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
4-746
 ID: PF00488
score: 100.00 (hhsearch)
coverage over query:
509-743
 ID: GO:0000217 (confident match)
name: DNA secondary structure binding
 PDB ID: 1wb9 chain A
(very confident match)
coverage over query:
4-744
psy13255 156 ID: A6W1Q6 (confident match)
name: DNA mismatch repair protein MutS
def: This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
source: Marinomonas sp. (strain MWYL1) (taxid: 400668)
 ID: COG0249
name: MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
22-156
 ID: PF00488
score: 99.95 (hhsearch)
coverage over query:
44-156
 ID: GO:0016887 (confident match)
name: ATPase activity
 PDB ID: 1wb9 chain A
(very confident match)
coverage over query:
22-156
psy13263 577 ID: Q9VUM0 (portable match)
name: Probable DNA mismatch repair protein Msh6
def: Involved in post-replicative DNA-mismatch repair.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0249
name: MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
258-525
 ID: PF00488
score: 100.00 (hhsearch)
coverage over query:
271-495
 no hit PDB ID: 1wb9 chain A
(very confident match)
coverage over query:
270-496
psy13254 132 ID: Q9VUM0 (confident match)
name: Probable DNA mismatch repair protein Msh6
def: Involved in post-replicative DNA-mismatch repair.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0249
name: MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
score:99.97 (hhsearch)
coverage over query:
2-132
 ID: PF01624
score: 99.82 (hhsearch)
coverage over query:
3-71
 ID: GO:0044428 (confident match)
name: nuclear part
 PDB ID: 2o8b chain B
(very confident match)
coverage over query:
2-132
psy13391 146 ID: P43246 (portable match)
name: DNA mismatch repair protein Msh2
def: Component of the post-replicative DNA mismatch repair system (MMR). Forms two different heterodimers: MutS alpha (MSH2-MSH6 heterodimer) and MutS beta (MSH2-MSH3 heterodimer) which binds to DNA mismatches thereby initiating DNA repair. When bound, heterodimers bend the DNA helix and shields approximately 20 base pairs. MutS alpha recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. MutS beta recognizes larger insertion-deletion loops up to 13 nucleotides long. After mismatch binding, MutS alpha or beta forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair. In melanocytes may modulate both UV-B-induced cell cycle regulation and apoptosis.
source: Homo sapiens (taxid: 9606)
 ID: COG0249
name: MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
score:99.83 (hhsearch)
coverage over query:
1-143
 ID: PF05192
score: 99.62 (hhsearch)
coverage over query:
1-117
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 3thx chain A
(very confident match)
coverage over query:
1-142
psy13262 229 ID: A7HZ64 (portable match)
name: DNA mismatch repair protein MutS
def: This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
source: Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) (taxid: 402881)
 ID: COG0249
name: MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
score:99.85 (hhsearch)
coverage over query:
116-228
 ID: PF10240
score: 99.86 (hhsearch)
coverage over query:
14-129
 ID: GO:0044446 (confident match)
name: intracellular organelle part
 PDB ID: 1wb9 chain A
(very confident match)
coverage over query:
58-228
psy4064 624 ID: Q90X38 (portable match)
name: G patch domain and KOW motifs-containing protein
def:
source: Danio rerio (taxid: 7955)
 ID: COG0250
name: NusG Transcription antiterminator [Transcription]
score:96.41 (hhsearch)
coverage over query:
33-79
 ID: PF00467
score: 97.78 (hhsearch)
coverage over query:
37-67
 no hit PDB ID: 2xhc chain A
(portable match)
coverage over query:
33-79
psy15370 393 ID: Q8K339 (confident match)
name: DNA/RNA-binding protein KIN17
def: Involved in DNA replication and the cellular response to DNA damage. May participate in DNA replication factories and create a bridge between DNA replication and repair mediated by high molecular weight complexes. May play a role in illegitimate recombination and regulation of gene expression. May participate in mRNA processing. Binds, in vitro, to double-stranded DNA. Also shown to bind preferentially to curved DNA in vitro and in vivo. Binds via its C-terminal domain to RNA in vitro.
source: Mus musculus (taxid: 10090)
 ID: COG0250
name: NusG Transcription antiterminator [Transcription]
score:92.61 (hhsearch)
coverage over query:
336-392
 ID: PF10357
score: 100.00 (hhsearch)
coverage over query:
52-178
 ID: GO:0016363 (confident match)
name: nuclear matrix
 PDB ID: 2v1n chain A
(very confident match)
coverage over query:
51-160
psy15371 393 ID: Q8K339 (confident match)
name: DNA/RNA-binding protein KIN17
def: Involved in DNA replication and the cellular response to DNA damage. May participate in DNA replication factories and create a bridge between DNA replication and repair mediated by high molecular weight complexes. May play a role in illegitimate recombination and regulation of gene expression. May participate in mRNA processing. Binds, in vitro, to double-stranded DNA. Also shown to bind preferentially to curved DNA in vitro and in vivo. Binds via its C-terminal domain to RNA in vitro.
source: Mus musculus (taxid: 10090)
 ID: COG0250
name: NusG Transcription antiterminator [Transcription]
score:92.61 (hhsearch)
coverage over query:
336-392
 ID: PF10357
score: 100.00 (hhsearch)
coverage over query:
52-178
 ID: GO:0016363 (confident match)
name: nuclear matrix
 PDB ID: 2v1n chain A
(very confident match)
coverage over query:
51-160
psy1836 127 ID: O25598 (confident match)
name: RutC family protein HP_0944
def:
source: Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)
 ID: COG0251
name: TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
10-123
 ID: PF01042
score: 100.00 (hhsearch)
coverage over query:
11-123
 ID: GO:0019239 (confident match)
name: deaminase activity
 PDB ID: 1qah chain A
(very confident match)
coverage over query:
12-123
psy9757 659 ID: O88202 (confident match)
name: 60 kDa lysophospholipase
def: Exhibits lysophospholipase, transacylase, PAF acetylhydrolase and asparaginase activities.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0252
name: AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
71-425
 ID: PF00710
score: 100.00 (hhsearch)
coverage over query:
76-418
 ID: GO:0006644 (confident match)
name: phospholipid metabolic process
 PDB ID: 2him chain A
(very confident match)
coverage over query:
72-117,139-431
psy12401 255 ID: O88202 (portable match)
name: 60 kDa lysophospholipase
def: Exhibits lysophospholipase, transacylase, PAF acetylhydrolase and asparaginase activities.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0252
name: AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
45-252
 ID: PF00710
score: 100.00 (hhsearch)
coverage over query:
50-253
 ID: GO:0042802 (confident match)
name: identical protein binding
 PDB ID: 2him chain A
(very confident match)
coverage over query:
46-91,108-254
psy15713 426 ID: Q5JI77 (portable match)
name: Glutamyl-tRNA(Gln) amidotransferase subunit D
def: Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The gatDE system is specific for glutamate and does not act on aspartate.
source: Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)
 ID: COG0252
name: AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
score:99.55 (hhsearch)
coverage over query:
1-136
 ID: PF12796
score: 99.77 (hhsearch)
coverage over query:
323-425
 no hit PDB ID: 2y1l chain E
(very confident match)
coverage over query:
174-198,233-342,382-418
psy13883 908 ID: A2QCC7 (portable match)
name: 54S ribosomal protein L4, mitochondrial
def:
source: Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)
 ID: COG0255
name: RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
score:94.90 (hhsearch)
coverage over query:
444-475
 ID: PF06984
score: 100.00 (hhsearch)
coverage over query:
328-471
 no hit PDB ID: 1r73 chain A
(portable match)
coverage over query:
351-382,443-473
psy8363 536 ID: Q9SF53 (confident match)
name: 60S ribosomal protein L35-1
def:
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0255
name: RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
score:99.77 (hhsearch)
coverage over query:
312-374
 ID: PF09606
score: 100.00 (hhsearch)
coverage over query:
1-305
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 2zkr chain v
(very confident match)
coverage over query:
306-429
psy5246 119 ID: Q3ZBR7 (confident match)
name: 39S ribosomal protein L18, mitochondrial
def: Together with thiosulfate sulfurtransferase (TST), acts as a mitochondrial import factor for the cytosolic 5S rRNA. The precursor form shows RNA chaperone activity; is able to fold the 5S rRNA into an import-competent conformation that is recognized by rhodanese (TST). Both the cytoplasmic and mitochondrial forms are able to bind to the helix IV-loop D in the gamma domain of the 5S rRNA.
source: Bos taurus (taxid: 9913)
 ID: COG0256
name: RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
score:99.95 (hhsearch)
coverage over query:
27-119
 ID: PF00861
score: 99.93 (hhsearch)
coverage over query:
29-118
 ID: GO:0008097 (confident match)
name: 5S rRNA binding
 PDB ID: 1vq8 chain N
(very confident match)
coverage over query:
47-119
psy5756 360 ID: Q58DW5 (very confident match)
name: 60S ribosomal protein L5
def: Required for rRNA maturation and formation of the 60S ribosomal subunits (By similarity). This protein binds 5S RNA.
source: Bos taurus (taxid: 9913)
 ID: COG0256
name: RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
58-217
 ID: PF00861
score: 99.96 (hhsearch)
coverage over query:
70-217
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 2zkr chain n
(very confident match)
coverage over query:
45-289
psy16814 124 ID: O94690 (portable match)
name: 54S ribosomal protein c83.06c, mitochondrial
def:
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0257
name: RpmJ Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]
score:99.88 (hhsearch)
coverage over query:
66-103
 ID: PF00444
score: 99.89 (hhsearch)
coverage over query:
66-103
 no hit PDB ID: 3bbo chain 6
(confident match)
coverage over query:
66-119
psy12967 222 ID: P28706 (portable match)
name: DNA repair protein rad13
def: Single-stranded DNA endonuclease involved in excision repair of DNA damaged with UV light, bulky adducts, or cross-linking agents. Essential for the incision step of excision-repair.
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0258
name: Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]
score:99.40 (hhsearch)
coverage over query:
72-222
 ID: PF00752
score: 99.95 (hhsearch)
coverage over query:
56-150
 ID: GO:0000738 (confident match)
name: DNA catabolic process, exonucleolytic
 PDB ID: 2izo chain A
(very confident match)
coverage over query:
63-221
psy14294 314 ID: Q7K734 (portable match)
name: Flap endonuclease 1
def: Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA.
source: Plasmodium falciparum (isolate 3D7) (taxid: 36329)
 ID: COG0258
name: Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]
score:99.67 (hhsearch)
coverage over query:
145-313
 ID: PF00752
score: 99.87 (hhsearch)
coverage over query:
125-220
 ID: GO:0003677 (confident match)
name: DNA binding
 PDB ID: 1b43 chain A
(very confident match)
coverage over query:
125-313
psy1209 61 ID: C3ZBT0 (confident match)
name: Flap endonuclease 1
def: Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA.
source: Branchiostoma floridae (taxid: 7739)
 ID: COG0258
name: Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]
score:96.81 (hhsearch)
coverage over query:
20-58
 ID: PF00752
score: 99.47 (hhsearch)
coverage over query:
1-40
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 3q8k chain A
(very confident match)
coverage over query:
2-59
psy1207 113 ID: C3ZBT0 (confident match)
name: Flap endonuclease 1
def: Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA.
source: Branchiostoma floridae (taxid: 7739)
 ID: COG0258
name: Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]
score:98.69 (hhsearch)
coverage over query:
8-100
 ID: PF00867
score: 99.88 (hhsearch)
coverage over query:
38-102
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 3q8k chain A
(very confident match)
coverage over query:
3-46,62-103
psy1206 531 ID: C3ZBT0 (portable match)
name: Flap endonuclease 1
def: Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA.
source: Branchiostoma floridae (taxid: 7739)
 ID: COG0258
name: Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]
score:99.91 (hhsearch)
coverage over query:
7-196
 ID: PF00867
score: 99.89 (hhsearch)
coverage over query:
52-139
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 3q8k chain A
(very confident match)
coverage over query:
61-202
psy14291 538 ID: P28706 (portable match)
name: DNA repair protein rad13
def: Single-stranded DNA endonuclease involved in excision repair of DNA damaged with UV light, bulky adducts, or cross-linking agents. Essential for the incision step of excision-repair.
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0258
name: Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]
score:99.97 (hhsearch)
coverage over query:
124-520
 ID: PF00867
score: 99.85 (hhsearch)
coverage over query:
328-412
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 3qe9 chain Y
(very confident match)
coverage over query:
110-154,168-180,201-221
,235-266,282-450
psy11827 336 ID: Q54ED2 (portable match)
name: Exonuclease 1
def: 5'->3' double-stranded DNA exonuclease which may also possess a cryptic 3'->5' double-stranded DNA exonuclease activity. Functions in DNA mismatch repair (MMR) to excise mismatch-containing DNA tracts directed by strand breaks located either 5' or 3' to the mismatch. Also exhibits endonuclease activity against 5'-overhanging flap structures similar to those generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment.
source: Dictyostelium discoideum (taxid: 44689)
 ID: COG0258
name: Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]
score:99.93 (hhsearch)
coverage over query:
12-233
 ID: PF00867
score: 99.93 (hhsearch)
coverage over query:
79-167
 ID: GO:0016893 (confident match)
name: endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
 PDB ID: 3qe9 chain Y
(very confident match)
coverage over query:
1-297
psy11828 443 ID: Q54ED2 (portable match)
name: Exonuclease 1
def: 5'->3' double-stranded DNA exonuclease which may also possess a cryptic 3'->5' double-stranded DNA exonuclease activity. Functions in DNA mismatch repair (MMR) to excise mismatch-containing DNA tracts directed by strand breaks located either 5' or 3' to the mismatch. Also exhibits endonuclease activity against 5'-overhanging flap structures similar to those generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment.
source: Dictyostelium discoideum (taxid: 44689)
 ID: COG0258
name: Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]
score:99.89 (hhsearch)
coverage over query:
18-298
 ID: PF00867
score: 99.85 (hhsearch)
coverage over query:
166-265
 no hit PDB ID: 3qe9 chain Y
(very confident match)
coverage over query:
14-122,166-340
psy14489 284 ID: Q49406 (confident match)
name: 5'-3' exonuclease
def: 5'-3' exonuclease acting preferentially on double-stranded DNA.
source: Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273)
 ID: COG0258
name: Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
4-283
 ID: PF02739
score: 100.00 (hhsearch)
coverage over query:
3-164
 ID: GO:0044464 (confident match)
name: cell part
 PDB ID: 1bgx chain T
(very confident match)
coverage over query:
2-283
psy7142 1309 no hit ID: COG0258
name: Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]
score:97.44 (hhsearch)
coverage over query:
888-1169
 ID: PF03638
score: 94.50 (hhsearch)
coverage over query:
1261-1302
 no hit PDB ID: 3qe9 chain Y
(portable match)
coverage over query:
1029-1064,1076-1146
psy1208 98 ID: C3ZBT0 (confident match)
name: Flap endonuclease 1
def: Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double-stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA.
source: Branchiostoma floridae (taxid: 7739)
 ID: COG0258
name: Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]
score:95.37 (hhsearch)
coverage over query:
2-61
 no hit ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 1b43 chain A
(very confident match)
coverage over query:
3-61
psy18235 232 no hit ID: COG0258
name: Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]
score:92.89 (hhsearch)
coverage over query:
17-112
 no hit no hit PDB ID: 1b43 chain A
(portable match)
coverage over query:
19-110
psy10276 172 no hit ID: COG0259
name: PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
38-172
 ID: PF01243
score: 98.96 (hhsearch)
coverage over query:
30-119
 no hit PDB ID: 1ci0 chain A
(confident match)
coverage over query:
39-172
psy2497 331 ID: Q5E9K3 (confident match)
name: Pyridoxine-5'-phosphate oxidase
def: Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
source: Bos taurus (taxid: 9913)
 ID: COG0259
name: PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
8-234
 ID: PF12766
score: 99.79 (hhsearch)
coverage over query:
35-124
 ID: GO:0004733 (confident match)
name: pyridoxamine-phosphate oxidase activity
 PDB ID: 1nrg chain A
(very confident match)
coverage over query:
6-234
psy14695 241 ID: A4JHA1 (confident match)
name: Pyridoxine/pyridoxamine 5'-phosphate oxidase
def: Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
source: Burkholderia vietnamiensis (strain G4 / LMG 22486) (taxid: 269482)
 ID: COG0259
name: PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
4-241
 ID: PF12766
score: 99.80 (hhsearch)
coverage over query:
45-141
 ID: GO:0005758 (confident match)
name: mitochondrial intermembrane space
 PDB ID: 1ci0 chain A
(very confident match)
coverage over query:
32-241
psy3774 963 ID: A4G7P5 (confident match)
name: Probable cytosol aminopeptidase
def: Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides.
source: Herminiimonas arsenicoxydans (taxid: 204773)
 ID: COG0260
name: PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
475-957
 ID: PF00883
score: 100.00 (hhsearch)
coverage over query:
643-951
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1gyt chain A
(very confident match)
coverage over query:
458-959
psy6043 282 ID: Q27245 (portable match)
name: Putative aminopeptidase W07G4.4
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0260
name: PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-280
 ID: PF00883
score: 100.00 (hhsearch)
coverage over query:
1-280
 ID: GO:0008240 (confident match)
name: tripeptidyl-peptidase activity
 PDB ID: 4efd chain A
(very confident match)
coverage over query:
1-280
psy6039 203 ID: Q27245 (portable match)
name: Putative aminopeptidase W07G4.4
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0260
name: PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
score:93.85 (hhsearch)
coverage over query:
71-202
 ID: PF02789
score: 93.23 (hhsearch)
coverage over query:
52-139
 no hit PDB ID: 3h8g chain F
(confident match)
coverage over query:
17-203
psy1265 384 ID: A5EVQ9 (portable match)
name: 50S ribosomal protein L21
def: This protein binds to 23S rRNA in the presence of protein L20.
source: Dichelobacter nodosus (strain VCS1703A) (taxid: 246195)
 ID: COG0261
name: RplU Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
209-315
 ID: PF00829
score: 100.00 (hhsearch)
coverage over query:
209-308
 no hit PDB ID: 3bbo chain T
(very confident match)
coverage over query:
204-346
psy1579 258 ID: Q920D2 (confident match)
name: Dihydrofolate reductase
def: Key enzyme in folate metabolism. Contributes to the de novo mitochondrial thymidylate biosynthesis pathway. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis. Binds its own mRNA and that of DHFRL1.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0262
name: FolA Dihydrofolate reductase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
2-219
 ID: PF00186
score: 100.00 (hhsearch)
coverage over query:
2-219
 ID: GO:0003729 (confident match)
name: mRNA binding
 PDB ID: 3ia4 chain A
(very confident match)
coverage over query:
2-121,160-220
psy11676 131 ID: P54889 (confident match)
name: Probable delta-1-pyrroline-5-carboxylate synthase
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0263
name: ProB Glutamate 5-kinase [Amino acid transport and metabolism]
score:99.97 (hhsearch)
coverage over query:
25-128
 ID: PF00696
score: 98.00 (hhsearch)
coverage over query:
29-81
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2j5v chain A
(very confident match)
coverage over query:
26-128
psy17364 312 ID: A8GM33 (confident match)
name: Elongation factor Ts
def: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome.
source: Rickettsia akari (strain Hartford) (taxid: 293614)
 ID: COG0264
name: Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
20-308
 ID: PF00889
score: 100.00 (hhsearch)
coverage over query:
79-296
 ID: GO:0005634 (confident match)
name: nucleus
 PDB ID: 1xb2 chain B
(very confident match)
coverage over query:
23-303
psy9257 530 ID: Q9JI92 (portable match)
name: Syntenin-1
def: Seems to function as an adapter protein. In adherens junctions may function to couple syndecans to cytoskeletal proteins or signaling components. Seems to couple transcription factor SOX4 to the IL-5 receptor (IL5RA). May also play a role in vesicular trafficking. Seems to be required for the targeting of TGFA to the cell surface in the early secretory pathway.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0265
name: DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
score:99.19 (hhsearch)
coverage over query:
291-439
 ID: PF13180
score: 99.31 (hhsearch)
coverage over query:
358-437
 ID: GO:0005515 (confident match)
name: protein binding
 PDB ID: 1w9e chain A
(very confident match)
coverage over query:
346-507
psy18070 169 ID: Q297U2 (confident match)
name: Serine protease HTRA2, mitochondrial
def: Serine protease that shows proteolytic activity against a non-specific substrate beta-casein. Promotes or induces cell death either by direct binding to and inhibition of BIRC proteins (also called inhibitor of apoptosis proteins, IAPs), leading to an increase in caspase activity, or by a BIRC inhibition-independent, caspase-independent and serine protease activity-dependent mechanism. Can antagonize antiapoptotic activity of th by directly inducing the degradation of th.
source: Drosophila pseudoobscura pseudoobscura (taxid: 46245)
 ID: COG0265
name: DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
score:99.90 (hhsearch)
coverage over query:
1-156
 ID: PF13180
score: 99.20 (hhsearch)
coverage over query:
65-162
 ID: GO:0030512 (confident match)
name: negative regulation of transforming growth factor beta receptor signaling pathway
 PDB ID: 1lcy chain A
(very confident match)
coverage over query:
4-132
psy18066 375 ID: Q9JIY5 (confident match)
name: Serine protease HTRA2, mitochondrial
def: Serine protease that shows proteolytic activity against a non-specific substrate beta-casein. Promotes or induces cell death either by direct binding to and inhibition of BIRC proteins (also called inhibitor of apoptosis proteins, IAPs), leading to an increase in caspase activity, or by a BIRC inhibition-independent, caspase-independent and serine protease activity-dependent mechanism. Cleaves THAP5 and promotes its degradation during apoptosis.
source: Mus musculus (taxid: 10090)
 ID: COG0265
name: DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
73-374
 ID: PF13365
score: 99.73 (hhsearch)
coverage over query:
103-242
 ID: GO:0005758 (confident match)
name: mitochondrial intermembrane space
 PDB ID: 1lcy chain A
(very confident match)
coverage over query:
67-374
psy2771 174 ID: Q9JIY5 (confident match)
name: Serine protease HTRA2, mitochondrial
def: Serine protease that shows proteolytic activity against a non-specific substrate beta-casein. Promotes or induces cell death either by direct binding to and inhibition of BIRC proteins (also called inhibitor of apoptosis proteins, IAPs), leading to an increase in caspase activity, or by a BIRC inhibition-independent, caspase-independent and serine protease activity-dependent mechanism. Cleaves THAP5 and promotes its degradation during apoptosis.
source: Mus musculus (taxid: 10090)
 ID: COG0265
name: DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
score:99.92 (hhsearch)
coverage over query:
4-166
 ID: PF13365
score: 99.11 (hhsearch)
coverage over query:
11-124
 ID: GO:0006508 (confident match)
name: proteolysis
 PDB ID: 1lcy chain A
(very confident match)
coverage over query:
10-166
psy16462 1522 ID: Q24K09 (portable match)
name: DNA (cytosine-5)-methyltransferase 1
def: Methylates CpG residues. Preferentially methylates hemimethylated DNA. Associates with DNA replication sites in S phase maintaining the methylation pattern in the newly synthesized strand, that is essential for epigenetic inheritance. Associates with chromatin during G2 and M phases to maintain DNA methylation independently of replication. It is responsible for maintaining methylation patterns established in development. DNA methylation is coordinated with methylation of histones. Mediates transcriptional repression by direct binding to HDAC2. In association with DNMT3B and via the recruitment of CTCFL/BORIS, involved in activation of BAG1 gene expression by modulating dimethylation of promoter histone H3 at H3K4 and H3K9.
source: Bos taurus (taxid: 9913)
 ID: COG0270
name: Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
885-1427
 ID: PF00145
score: 100.00 (hhsearch)
coverage over query:
887-1152
 ID: GO:0003676 (confident match)
name: nucleic acid binding
 PDB ID: 3av4 chain A
(very confident match)
coverage over query:
4-794,886-1025,1105-1436
psy13720 487 ID: Q24K09 (confident match)
name: DNA (cytosine-5)-methyltransferase 1
def: Methylates CpG residues. Preferentially methylates hemimethylated DNA. Associates with DNA replication sites in S phase maintaining the methylation pattern in the newly synthesized strand, that is essential for epigenetic inheritance. Associates with chromatin during G2 and M phases to maintain DNA methylation independently of replication. It is responsible for maintaining methylation patterns established in development. DNA methylation is coordinated with methylation of histones. Mediates transcriptional repression by direct binding to HDAC2. In association with DNMT3B and via the recruitment of CTCFL/BORIS, involved in activation of BAG1 gene expression by modulating dimethylation of promoter histone H3 at H3K4 and H3K9.
source: Bos taurus (taxid: 9913)
 ID: COG0270
name: Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
216-400
 ID: PF00145
score: 100.00 (hhsearch)
coverage over query:
218-404
 ID: GO:0051573 (confident match)
name: negative regulation of histone H3-K9 methylation
 PDB ID: 3av4 chain A
(very confident match)
coverage over query:
1-484
psy3546 164 ID: O55055 (portable match)
name: tRNA (cytosine(38)-C(5))-methyltransferase
def: Specifically methylates cytosine 38 in the anticodon loop of tRNA(Asp).
source: Mus musculus (taxid: 10090)
 ID: COG0270
name: Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
score:99.94 (hhsearch)
coverage over query:
4-117
 ID: PF00145
score: 99.95 (hhsearch)
coverage over query:
2-117
 no hit PDB ID: 1g55 chain A
(very confident match)
coverage over query:
3-45,62-116
psy12304 620 ID: Q24K09 (portable match)
name: DNA (cytosine-5)-methyltransferase 1
def: Methylates CpG residues. Preferentially methylates hemimethylated DNA. Associates with DNA replication sites in S phase maintaining the methylation pattern in the newly synthesized strand, that is essential for epigenetic inheritance. Associates with chromatin during G2 and M phases to maintain DNA methylation independently of replication. It is responsible for maintaining methylation patterns established in development. DNA methylation is coordinated with methylation of histones. Mediates transcriptional repression by direct binding to HDAC2. In association with DNMT3B and via the recruitment of CTCFL/BORIS, involved in activation of BAG1 gene expression by modulating dimethylation of promoter histone H3 at H3K4 and H3K9.
source: Bos taurus (taxid: 9913)
 ID: COG0270
name: Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
116-603
 ID: PF00145
score: 100.00 (hhsearch)
coverage over query:
118-349
 no hit PDB ID: 3av4 chain A
(very confident match)
coverage over query:
1-455,492-612
psy4735 1232 ID: Q4G073 (portable match)
name: tRNA (cytosine(38)-C(5))-methyltransferase
def: Specifically methylates cytosine 38 in the anticodon loop of tRNA(Asp).
source: Rattus norvegicus (taxid: 10116)
 ID: COG0270
name: Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
score:99.92 (hhsearch)
coverage over query:
257-333
 ID: PF00145
score: 99.97 (hhsearch)
coverage over query:
258-334
 no hit PDB ID: 3qv2 chain A
(very confident match)
coverage over query:
259-350,366-435,521-523
,538-546,589-653
psy3543 250 ID: Q54JH6 (confident match)
name: DNA (cytosine-5)-methyltransferase
def: Involved in epigenetic gene silencing. Methylates specific cytosine residues in the retrotransposons DIRS-1 and Skipper.
source: Dictyostelium discoideum (taxid: 44689)
 ID: COG0270
name: Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
2-154
 ID: PF00145
score: 100.00 (hhsearch)
coverage over query:
2-155
 no hit PDB ID: 1g55 chain A
(very confident match)
coverage over query:
2-249
psy6834 313 ID: Q86HT3 (confident match)
name: BolA-like protein DDB_G0274439
def:
source: Dictyostelium discoideum (taxid: 44689)
 ID: COG0271
name: BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
score:99.87 (hhsearch)
coverage over query:
42-118
 ID: PF01722
score: 99.86 (hhsearch)
coverage over query:
49-118
 no hit PDB ID: 3o2e chain A
(very confident match)
coverage over query:
40-118
psy6791 293 no hit ID: COG0271
name: BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
score:99.94 (hhsearch)
coverage over query:
198-284
 ID: PF01722
score: 99.94 (hhsearch)
coverage over query:
203-282
 no hit PDB ID: 1v9j chain A
(confident match)
coverage over query:
196-286
psy4159 170 no hit ID: COG0271
name: BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
score:99.96 (hhsearch)
coverage over query:
14-159
 ID: PF01722
score: 99.95 (hhsearch)
coverage over query:
97-157
 no hit PDB ID: 2dhm chain A
(very confident match)
coverage over query:
7-43,96-115,126-167
psy3043 731 ID: Q5NVS8 (confident match)
name: Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase
def: Adds the first glucose residue to the lipid-linked oligosaccharide precursor for N-linked glycosylation. Transfers glucose from dolichyl phosphate glucose (Dol-P-Glc) onto the lipid-linked oligosaccharide Man(9)GlcNAc(2)-PP-Dol.
source: Pongo abelii (taxid: 9601)
 ID: COG0271
name: BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
score:99.83 (hhsearch)
coverage over query:
591-682
 ID: PF03155
score: 100.00 (hhsearch)
coverage over query:
26-479
 ID: GO:0005794 (confident match)
name: Golgi apparatus
 PDB ID: 1v60 chain A
(very confident match)
coverage over query:
562-684
psy11422 687 ID: A4G4R4 (very confident match)
name: DNA ligase
def: DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
source: Herminiimonas arsenicoxydans (taxid: 204773)
 ID: COG0272
name: Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
10-679
 ID: PF01653
score: 100.00 (hhsearch)
coverage over query:
13-328
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2owo chain A
(very confident match)
coverage over query:
13-679
psy11421 687 ID: A4G4R4 (very confident match)
name: DNA ligase
def: DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
source: Herminiimonas arsenicoxydans (taxid: 204773)
 ID: COG0272
name: Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
10-679
 ID: PF01653
score: 100.00 (hhsearch)
coverage over query:
13-328
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3uq8 chain A
(very confident match)
coverage over query:
14-333
psy11423 655 ID: Q1LNG5 (confident match)
name: DNA ligase
def: DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
source: Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) (taxid: 266264)
 ID: COG0272
name: Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
10-647
 ID: PF01653
score: 100.00 (hhsearch)
coverage over query:
13-328
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3uq8 chain A
(very confident match)
coverage over query:
14-333
psy965 214 ID: B8F671 (confident match)
name: Deoxyribose-phosphate aldolase
def: Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.
source: Haemophilus parasuis serovar 5 (strain SH0165) (taxid: 557723)
 ID: COG0274
name: DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
47-213
 ID: PF01791
score: 100.00 (hhsearch)
coverage over query:
49-212
 ID: GO:0004139 (confident match)
name: deoxyribose-phosphate aldolase activity
 PDB ID: 3ngj chain A
(very confident match)
coverage over query:
48-213
psy10250 387 ID: Q9Y315 (confident match)
name: Putative deoxyribose-phosphate aldolase
def: Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.
source: Homo sapiens (taxid: 9606)
 ID: COG0274
name: DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
128-383
 ID: PF01791
score: 100.00 (hhsearch)
coverage over query:
130-381
 ID: GO:0004139 (confident match)
name: deoxyribose-phosphate aldolase activity
 PDB ID: 1mzh chain A
(very confident match)
coverage over query:
129-156,173-382
psy969 106 ID: Q19264 (confident match)
name: Putative deoxyribose-phosphate aldolase
def: Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0274
name: DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
score:99.94 (hhsearch)
coverage over query:
3-101
 ID: PF01791
score: 99.67 (hhsearch)
coverage over query:
3-100
 no hit PDB ID: 2a4a chain A
(very confident match)
coverage over query:
3-105
psy2376 896 ID: B1XC59 (confident match)
name: Ribosomal RNA small subunit methyltransferase H
def: Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
source: Escherichia coli (strain K12 / DH10B) (taxid: 316385)
 ID: COG0275
name: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
score:100.00 (hhsearch)
coverage over query:
390-667
 ID: PF01795
score: 100.00 (hhsearch)
coverage over query:
390-667
 ID: GO:0071424 (confident match)
name: rRNA (cytosine-N4-)-methyltransferase activity
 PDB ID: 1nmo chain A
(very confident match)
coverage over query:
665-894
psy2380 733 ID: B1XC59 (confident match)
name: Ribosomal RNA small subunit methyltransferase H
def: Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
source: Escherichia coli (strain K12 / DH10B) (taxid: 316385)
 ID: COG0275
name: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
score:100.00 (hhsearch)
coverage over query:
225-506
 ID: PF01795
score: 100.00 (hhsearch)
coverage over query:
225-506
 ID: GO:0071424 (confident match)
name: rRNA (cytosine-N4-)-methyltransferase activity
 PDB ID: 1nmo chain A
(very confident match)
coverage over query:
508-732
psy7191 413 ID: Q9VGY5 (confident match)
name: Probable methyltransferase-like protein 15 homolog
def: Probable S-adenosyl-L-methionine-dependent methyltransferase.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0275
name: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
score:100.00 (hhsearch)
coverage over query:
66-405
 ID: PF01795
score: 100.00 (hhsearch)
coverage over query:
66-404
 no hit PDB ID: 1wg8 chain A
(very confident match)
coverage over query:
67-258,290-349,364-364
,380-404
psy5712 386 ID: P22315 (confident match)
name: Ferrochelatase, mitochondrial
def: Catalyzes the ferrous insertion into protoporphyrin IX.
source: Mus musculus (taxid: 10090)
 ID: COG0276
name: HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
32-311
 ID: PF00762
score: 100.00 (hhsearch)
coverage over query:
34-310
 ID: GO:0005875 (confident match)
name: microtubule associated complex
 PDB ID: 2h1v chain A
(very confident match)
coverage over query:
32-277,292-311
psy45 69 ID: Q9V9S8 (confident match)
name: Ferrochelatase, mitochondrial
def: Catalyzes the ferrous insertion into protoporphyrin IX.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0276
name: HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
score:98.69 (hhsearch)
coverage over query:
2-36
 ID: PF00762
score: 98.80 (hhsearch)
coverage over query:
2-35
 ID: GO:0005875 (confident match)
name: microtubule associated complex
 PDB ID: 3hcn chain A
(very confident match)
coverage over query:
2-69
psy15564 1041 ID: Q5ZLT0 (confident match)
name: Exportin-7
def: Mediates the nuclear export of proteins (cargos) with broad substrate specificity.
source: Gallus gallus (taxid: 9031)
 ID: COG0276
name: HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
31-323
 ID: PF00762
score: 100.00 (hhsearch)
coverage over query:
34-322
 ID: GO:0050896 (confident match)
name: response to stimulus
 PDB ID: 3hcn chain A
(very confident match)
coverage over query:
74-187,202-290
psy6765 246 ID: O23240 (portable match)
name: D-2-hydroxyglutarate dehydrogenase, mitochondrial
def: Catalyzes the oxidation of D-2-hydroxyglutarate to alpha-ketoglutarate. May be involved in the catabolism of propionyl-CoA derived from beta-oxidation.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0277
name: GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
score:99.87 (hhsearch)
coverage over query:
33-175
 ID: PF01565
score: 99.82 (hhsearch)
coverage over query:
66-174
 ID: GO:0016614 (confident match)
name: oxidoreductase activity, acting on CH-OH group of donors
 PDB ID: 3pm9 chain A
(very confident match)
coverage over query:
23-170
psy4131 241 ID: Q9V778 (confident match)
name: Alkyldihydroxyacetonephosphate synthase
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0277
name: GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
53-241
 ID: PF01565
score: 99.93 (hhsearch)
coverage over query:
99-220
 ID: GO:0044444 (confident match)
name: cytoplasmic part
 PDB ID: 4bby chain A
(very confident match)
coverage over query:
43-241
psy4717 90 ID: Q9EQR2 (confident match)
name: Alkyldihydroxyacetonephosphate synthase, peroxisomal
def:
source: Rattus norvegicus (taxid: 10116)
 ID: COG0277
name: GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
score:99.34 (hhsearch)
coverage over query:
25-89
 ID: PF01565
score: 99.41 (hhsearch)
coverage over query:
30-89
 ID: GO:0071949 (confident match)
name: FAD binding
 PDB ID: 4bby chain A
(very confident match)
coverage over query:
3-89
psy15832 2157 ID: Q15392 (portable match)
name: Delta(24)-sterol reductase
def: Catalyzes the reduction of the delta-24 double bond of sterol intermediates. Protects cells from oxidative stress by reducing caspase 3 activity during apoptosis induced by oxidative stress. Also protects against amyloid-beta peptide-induced apoptosis.
source: Homo sapiens (taxid: 9606)
 ID: COG0277
name: GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
score:99.49 (hhsearch)
coverage over query:
1607-1705
 ID: PF01565
score: 99.55 (hhsearch)
coverage over query:
1578-1700
 no hit PDB ID: 2bvf chain A
(confident match)
coverage over query:
1579-1703
psy4699 500 ID: Q9EQR2 (confident match)
name: Alkyldihydroxyacetonephosphate synthase, peroxisomal
def:
source: Rattus norvegicus (taxid: 10116)
 ID: COG0277
name: GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
score:99.95 (hhsearch)
coverage over query:
69-404
 ID: PF02913
score: 99.95 (hhsearch)
coverage over query:
131-402
 ID: GO:0005778 (confident match)
name: peroxisomal membrane
 PDB ID: 4bby chain A
(very confident match)
coverage over query:
69-403
psy3496 223 ID: Q9EQR2 (confident match)
name: Alkyldihydroxyacetonephosphate synthase, peroxisomal
def:
source: Rattus norvegicus (taxid: 10116)
 ID: COG0277
name: GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
score:98.82 (hhsearch)
coverage over query:
25-105
 ID: PF02913
score: 98.72 (hhsearch)
coverage over query:
65-204
 ID: GO:0071949 (confident match)
name: FAD binding
 PDB ID: 4bby chain A
(very confident match)
coverage over query:
40-127,157-222
psy4129 355 ID: Q9EQR2 (confident match)
name: Alkyldihydroxyacetonephosphate synthase, peroxisomal
def:
source: Rattus norvegicus (taxid: 10116)
 ID: COG0277
name: GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
score:99.63 (hhsearch)
coverage over query:
6-308
 ID: PF02913
score: 100.00 (hhsearch)
coverage over query:
3-305
 ID: GO:0071949 (confident match)
name: FAD binding
 PDB ID: 2uuu chain A
(very confident match)
coverage over query:
4-179,236-306
psy732 119 ID: O23240 (portable match)
name: D-2-hydroxyglutarate dehydrogenase, mitochondrial
def: Catalyzes the oxidation of D-2-hydroxyglutarate to alpha-ketoglutarate. May be involved in the catabolism of propionyl-CoA derived from beta-oxidation.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0277
name: GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
score:99.38 (hhsearch)
coverage over query:
3-116
 ID: PF02913
score: 99.83 (hhsearch)
coverage over query:
3-117
 no hit PDB ID: 3pm9 chain A
(very confident match)
coverage over query:
3-115
psy11597 317 ID: Q15392 (confident match)
name: Delta(24)-sterol reductase
def: Catalyzes the reduction of the delta-24 double bond of sterol intermediates. Protects cells from oxidative stress by reducing caspase 3 activity during apoptosis induced by oxidative stress. Also protects against amyloid-beta peptide-induced apoptosis.
source: Homo sapiens (taxid: 9606)
 ID: COG0277
name: GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
score:99.66 (hhsearch)
coverage over query:
3-314
 ID: PF04030
score: 99.87 (hhsearch)
coverage over query:
188-316
 no hit PDB ID: 4feh chain A
(very confident match)
coverage over query:
4-316
psy15246 213 ID: Q9CMN5 (confident match)
name: Glutaredoxin-4
def: Monothiol glutaredoxin involved in the biogenesis of iron-sulfur clusters.
source: Pasteurella multocida (strain Pm70) (taxid: 272843)
 ID: COG0278
name: Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
score:99.94 (hhsearch)
coverage over query:
96-205
 ID: PF00085
score: 99.90 (hhsearch)
coverage over query:
3-104
 no hit PDB ID: 1wmj chain A
(very confident match)
coverage over query:
2-106
psy1118 3374 ID: P55142 (confident match)
name: Glutaredoxin-C6
def: Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. Possesses thioltransferase, dehydroascorbate reductase and GSH-dependent peroxidase activities in vitro.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0278
name: Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
423-521
 ID: PF00462
score: 99.22 (hhsearch)
coverage over query:
3044-3107
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3c1r chain A
(very confident match)
coverage over query:
3245-3345
psy221 205 ID: Q851Y7 (confident match)
name: Monothiol glutaredoxin-S7, chloroplastic
def: May only reduce GSH-thiol disulfides, but not protein disulfides.
source: Oryza sativa subsp. japonica (taxid: 39947)
 ID: COG0278
name: Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
score:99.93 (hhsearch)
coverage over query:
29-130
 ID: PF00462
score: 99.70 (hhsearch)
coverage over query:
44-108
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3gx8 chain A
(very confident match)
coverage over query:
28-133
psy15946 251 ID: Q9VNL4 (confident match)
name: Glutaredoxin domain-containing cysteine-rich protein CG31559
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0278
name: Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
score:99.76 (hhsearch)
coverage over query:
98-193
 ID: PF04908
score: 99.61 (hhsearch)
coverage over query:
104-191
 ID: GO:0044464 (confident match)
name: cell part
 PDB ID: 2khp chain A
(very confident match)
coverage over query:
101-191
psy1675 179 ID: Q29558 (confident match)
name: NADP-dependent malic enzyme (Fragment)
def:
source: Sus scrofa (taxid: 9823)
 ID: COG0281
name: SfcA Malic enzyme [Energy production and conversion]
score:99.40 (hhsearch)
coverage over query:
23-157
 ID: PF00390
score: 100.00 (hhsearch)
coverage over query:
11-125
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1gq2 chain A
(very confident match)
coverage over query:
11-160
psy14380 513 ID: A9L2F4 (portable match)
name: NAD-dependent malic enzyme
def:
source: Shewanella baltica (strain OS195) (taxid: 399599)
 ID: COG0281
name: SfcA Malic enzyme [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
11-364
 ID: PF00390
score: 100.00 (hhsearch)
coverage over query:
283-372
 no hit PDB ID: 1gq2 chain A
(very confident match)
coverage over query:
24-130,276-371,446-513
psy14495 766 ID: P43837 (very confident match)
name: NADP-dependent malic enzyme
def:
source: Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)
 ID: COG0281
name: SfcA Malic enzyme [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
10-437
 ID: PF01515
score: 100.00 (hhsearch)
coverage over query:
436-760
 ID: GO:0055114 (confident match)
name: oxidation-reduction process
 PDB ID: 2dvm chain A
(very confident match)
coverage over query:
13-364,381-443
psy14377 848 ID: A8FZ49 (confident match)
name: NAD-dependent malic enzyme
def:
source: Shewanella sediminis (strain HAW-EB3) (taxid: 425104)
 ID: COG0281
name: SfcA Malic enzyme [Energy production and conversion]
score:100.00 (hhsearch)
coverage over query:
502-787
 ID: PF03949
score: 100.00 (hhsearch)
coverage over query:
215-553
 ID: GO:0006108 (confident match)
name: malate metabolic process
 PDB ID: 1gq2 chain A
(very confident match)
coverage over query:
507-718
psy14390 64 no hit ID: COG0281
name: SfcA Malic enzyme [Energy production and conversion]
score:96.65 (hhsearch)
coverage over query:
3-40
 ID: PF03949
score: 99.33 (hhsearch)
coverage over query:
1-44
 no hit PDB ID: 1gq2 chain A
(very confident match)
coverage over query:
1-44
psy4093 434 ID: O13410 (portable match)
name: Orotidine 5'-phosphate decarboxylase
def:
source: Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)
 ID: COG0284
name: PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
111-301
 ID: PF00215
score: 99.93 (hhsearch)
coverage over query:
78-295
 no hit PDB ID: 3gdm chain A
(very confident match)
coverage over query:
77-182,211-310
psy15432 1255 ID: Q05932 (portable match)
name: Folylpolyglutamate synthase, mitochondrial
def: Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Unsubstitued reduced folates are the preferred substrates. Metabolizes methotrexate (MTX) to polyglutamates.
source: Homo sapiens (taxid: 9606)
 ID: COG0285
name: FolC Folylpolyglutamate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
52-652
 ID: PF08245
score: 99.86 (hhsearch)
coverage over query:
113-325
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1w78 chain A
(very confident match)
coverage over query:
664-678,689-940,1012-1064
,1077-1167
psy1839 304 ID: Q8W035 (confident match)
name: Folylpolyglutamate synthase
def: Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis. Essential for organellar and whole-plant folate homeostasis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0285
name: FolC Folylpolyglutamate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
2-296
 ID: PF08245
score: 99.38 (hhsearch)
coverage over query:
59-161
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2vos chain A
(very confident match)
coverage over query:
2-296
psy9580 71 ID: Q2YBS4 (very confident match)
name: 50S ribosomal protein L35
def:
source: Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) (taxid: 323848)
 ID: COG0291
name: RpmI Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]
score:99.97 (hhsearch)
coverage over query:
7-71
 ID: PF01632
score: 99.93 (hhsearch)
coverage over query:
8-68
 ID: GO:0022625 (very confident match)
name: cytosolic large ribosomal subunit
 PDB ID: 3r8s chain 3
(very confident match)
coverage over query:
8-71
psy9578 122 ID: Q8XZ26 (very confident match)
name: 50S ribosomal protein L20
def: Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
source: Ralstonia solanacearum (strain GMI1000) (taxid: 267608)
 ID: COG0292
name: RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
1-118
 ID: PF00453
score: 100.00 (hhsearch)
coverage over query:
2-109
 ID: GO:0000900 (very confident match)
name: translation repressor activity, nucleic acid binding
 PDB ID: 2ghj chain A
(very confident match)
coverage over query:
2-118
psy12837 184 ID: A7HPK9 (confident match)
name: 50S ribosomal protein L20
def: Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
source: Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) (taxid: 402881)
 ID: COG0292
name: RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
26-97
 ID: PF00453
score: 99.97 (hhsearch)
coverage over query:
18-88
 no hit PDB ID: 2ghj chain A
(very confident match)
coverage over query:
17-96
psy1489 229 ID: Q9VDT6 (very confident match)
name: Putative ribosomal RNA methyltransferase CG11447
def: Probable methyltransferase.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0293
name: FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
18-229
 ID: PF01728
score: 100.00 (hhsearch)
coverage over query:
41-226
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 3dou chain A
(very confident match)
coverage over query:
38-84,95-228
psy11646 433 ID: Q9UET6 (confident match)
name: Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0293
name: FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
score:99.96 (hhsearch)
coverage over query:
124-295
 ID: PF01728
score: 99.91 (hhsearch)
coverage over query:
200-291
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3ccf chain A
(very confident match)
coverage over query:
24-144
psy15838 399 ID: Q8BWQ4 (confident match)
name: FtsJ methyltransferase domain-containing protein 1
def:
source: Mus musculus (taxid: 10090)
 ID: COG0293
name: FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
133-365
 ID: PF01728
score: 100.00 (hhsearch)
coverage over query:
141-362
 no hit PDB ID: 3dou chain A
(very confident match)
coverage over query:
138-205,223-366
psy3133 547 ID: A0B8A1 (portable match)
name: Ribosomal RNA large subunit methyltransferase E
def: Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
source: Methanosaeta thermophila (strain DSM 6194 / PT) (taxid: 349307)
 ID: COG0293
name: FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
score:99.97 (hhsearch)
coverage over query:
1-114
 ID: PF11861
score: 99.96 (hhsearch)
coverage over query:
141-357
 ID: GO:0043231 (confident match)
name: intracellular membrane-bounded organelle
 PDB ID: 3dou chain A
(very confident match)
coverage over query:
1-114
psy2494 166 ID: P56389 (confident match)
name: Cytidine deaminase
def: This enzyme scavenge exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.
source: Mus musculus (taxid: 10090)
 ID: COG0295
name: Cdd Cytidine deaminase [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
17-155
 ID: PF08211
score: 99.84 (hhsearch)
coverage over query:
16-90
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2d30 chain A
(very confident match)
coverage over query:
16-155
psy14038 131 ID: Q96VA4 (confident match)
name: 1,4-alpha-glucan-branching enzyme
def:
source: Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)
 ID: COG0296
name: GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
7-131
 ID: PF00128
score: 99.30 (hhsearch)
coverage over query:
83-131
 ID: GO:0009570 (confident match)
name: chloroplast stroma
 PDB ID: 3aml chain A
(very confident match)
coverage over query:
6-131
psy9004 237 ID: Q6EAS5 (confident match)
name: 1,4-alpha-glucan-branching enzyme
def: Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells.
source: Equus caballus (taxid: 9796)
 ID: COG0296
name: GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
3-219
 ID: PF00128
score: 100.00 (hhsearch)
coverage over query:
3-200
 ID: GO:0030246 (confident match)
name: carbohydrate binding
 PDB ID: 3aml chain A
(very confident match)
coverage over query:
44-217
psy9003 1276 ID: Q6CCT1 (portable match)
name: 1,4-alpha-glucan-branching enzyme
def:
source: Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)
 ID: COG0296
name: GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
760-1206
 ID: PF00128
score: 99.97 (hhsearch)
coverage over query:
913-1249
 no hit PDB ID: 3aml chain A
(very confident match)
coverage over query:
1033-1205
psy9001 1351 ID: Q6EAS5 (portable match)
name: 1,4-alpha-glucan-branching enzyme
def: Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells.
source: Equus caballus (taxid: 9796)
 ID: COG0296
name: GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
67-639
 ID: PF00128
score: 99.98 (hhsearch)
coverage over query:
1014-1326
 no hit PDB ID: 3aml chain A
(very confident match)
coverage over query:
317-490
psy9010 131 ID: Q9Y8H3 (confident match)
name: 1,4-alpha-glucan-branching enzyme
def:
source: Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)
 ID: COG0296
name: GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
score:98.74 (hhsearch)
coverage over query:
7-80
 ID: PF02806
score: 99.40 (hhsearch)
coverage over query:
8-81
 no hit PDB ID: 3aml chain A
(very confident match)
coverage over query:
8-83
psy9007 132 ID: Q96VA4 (portable match)
name: 1,4-alpha-glucan-branching enzyme
def:
source: Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)
 ID: COG0296
name: GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
score:98.81 (hhsearch)
coverage over query:
65-132
 ID: PF02922
score: 98.90 (hhsearch)
coverage over query:
82-131
 ID: GO:0009536 (confident match)
name: plastid
 PDB ID: 3aml chain A
(very confident match)
coverage over query:
12-107
psy9008 89 ID: Q6EAS5 (portable match)
name: 1,4-alpha-glucan-branching enzyme
def: Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells.
source: Equus caballus (taxid: 9796)
 ID: COG0296
name: GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
score:99.30 (hhsearch)
coverage over query:
11-72
 ID: PF02922
score: 99.41 (hhsearch)
coverage over query:
16-72
 no hit PDB ID: 3aml chain A
(very confident match)
coverage over query:
3-71
psy9005 99 ID: Q96VA4 (portable match)
name: 1,4-alpha-glucan-branching enzyme
def:
source: Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)
 ID: COG0296
name: GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
score:99.04 (hhsearch)
coverage over query:
4-91
 no hit ID: GO:0005737 (confident match)
name: cytoplasm
 PDB ID: 3aml chain A
(very confident match)
coverage over query:
4-93
psy9009 258 ID: Q96VA4 (portable match)
name: 1,4-alpha-glucan-branching enzyme
def:
source: Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)
 ID: COG0296
name: GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
score:97.75 (hhsearch)
coverage over query:
3-179
 no hit no hit PDB ID: 3aml chain A
(very confident match)
coverage over query:
3-176
psy12587 390 ID: Q9DBE8 (confident match)
name: Alpha-1,3/1,6-mannosyltransferase ALG2
def: Mannosylates Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate.
source: Mus musculus (taxid: 10090)
 ID: COG0297
name: GlgA Glycogen synthase [Carbohydrate transport and metabolism]
score:99.96 (hhsearch)
coverage over query:
76-388
 ID: PF00534
score: 99.95 (hhsearch)
coverage over query:
190-363
 ID: GO:0046982 (confident match)
name: protein heterodimerization activity
 PDB ID: 3c48 chain A
(very confident match)
coverage over query:
2-388
psy4649 755 ID: P13834 (very confident match)
name: Glycogen [starch] synthase, muscle
def: Transfers the glycosyl residue from UDP-Glc to the non-reducing end of alpha-1,4-glucan.
source: Oryctolagus cuniculus (taxid: 9986)
 ID: COG0297
name: GlgA Glycogen synthase [Carbohydrate transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
16-607
 ID: PF05693
score: 100.00 (hhsearch)
coverage over query:
19-719
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3nb0 chain A
(very confident match)
coverage over query:
7-592,637-705
psy8013 252 ID: Q64323 (confident match)
name: N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein
def: Necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, the very early intermediate in GPI-anchor biosynthesis.
source: Mus musculus (taxid: 10090)
 ID: COG0297
name: GlgA Glycogen synthase [Carbohydrate transport and metabolism]
score:99.45 (hhsearch)
coverage over query:
2-185
 ID: PF13439
score: 99.94 (hhsearch)
coverage over query:
1-180
 ID: GO:0006506 (confident match)
name: GPI anchor biosynthetic process
 PDB ID: 2iuy chain A
(very confident match)
coverage over query:
6-57,73-125,141-184
psy13615 263 ID: Q57E30 (portable match)
name: Phosphoribosylformylglycinamidine cyclo-ligase
def:
source: Brucella abortus biovar 1 (strain 9-941) (taxid: 262698)
 ID: COG0299
name: PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
11-228
 ID: PF01071
score: 99.98 (hhsearch)
coverage over query:
140-263
 no hit PDB ID: 2qk4 chain A
(very confident match)
coverage over query:
141-263
psy14908 61 ID: Q05A13 (confident match)
name: Short-chain dehydrogenase/reductase family 16C member 6
def:
source: Mus musculus (taxid: 10090)
 ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:99.74 (hhsearch)
coverage over query:
1-61
 ID: PF00106
score: 99.55 (hhsearch)
coverage over query:
1-61
 ID: GO:0005811 (confident match)
name: lipid particle
 PDB ID: 3f1l chain A
(very confident match)
coverage over query:
1-59
psy6114 66 ID: Q6P5L8 (confident match)
name: Hydroxysteroid dehydrogenase-like protein 2
def: Has apparently no steroid dehydrogenase activity.
source: Danio rerio (taxid: 7955)
 ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:99.35 (hhsearch)
coverage over query:
5-49
 ID: PF00106
score: 98.71 (hhsearch)
coverage over query:
10-42
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3kvo chain A
(very confident match)
coverage over query:
3-63
psy13141 84 ID: Q08651 (portable match)
name: Probable oxidoreductase ENV9
def: Probable dehydrogenase required for replication of Brome mosaic virus. Involved in vacuolar processing and morphology.
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:99.73 (hhsearch)
coverage over query:
1-83
 ID: PF00106
score: 99.55 (hhsearch)
coverage over query:
2-83
 ID: GO:0006629 (confident match)
name: lipid metabolic process
 PDB ID: 3rd5 chain A
(very confident match)
coverage over query:
2-83
psy10632 273 ID: Q09517 (portable match)
name: Very-long-chain 3-oxooacyl-coA reductase let-767
def: May be required for synthesis of a sterol hormone.
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:100.00 (hhsearch)
coverage over query:
112-272
 ID: PF00106
score: 99.95 (hhsearch)
coverage over query:
115-272
 ID: GO:0044281 (confident match)
name: small molecule metabolic process
 PDB ID: 4fgs chain A
(very confident match)
coverage over query:
112-272
psy2040 159 ID: Q8N3Y7 (portable match)
name: Epidermal retinol dehydrogenase 2
def: Oxidoreductase with strong preference for NAD. Active in both the oxidative and reductive directions. Oxidizes all-trans-retinol in all-trans-retinaldehyde. No activity was detected with 11-cis-retinol or 11-cis-retinaldehyde as substrates with either NAD(+)/NADH or NADP(+)/NADPH.
source: Homo sapiens (taxid: 9606)
 ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:99.30 (hhsearch)
coverage over query:
97-159
 ID: PF00106
score: 98.78 (hhsearch)
coverage over query:
102-159
 ID: GO:0044444 (confident match)
name: cytoplasmic part
 PDB ID: 3n74 chain A
(very confident match)
coverage over query:
96-159
psy7029 125 ID: P42317 (portable match)
name: Uncharacterized oxidoreductase YxjF
def:
source: Bacillus subtilis (strain 168) (taxid: 224308)
 ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:99.88 (hhsearch)
coverage over query:
2-124
 ID: PF00106
score: 99.75 (hhsearch)
coverage over query:
3-124
 ID: GO:0044710 (confident match)
name: single-organism metabolic process
 PDB ID: 3ucx chain A
(very confident match)
coverage over query:
2-40,68-119
psy9143 100 ID: Q9VXJ0 (confident match)
name: Peroxisomal multifunctional enzyme type 2
def: Bifunctional enzyme acting on the peroxisomal beta-oxidation pathway for fatty acids.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:99.87 (hhsearch)
coverage over query:
6-100
 ID: PF00106
score: 99.70 (hhsearch)
coverage over query:
10-100
 ID: GO:0051704 (confident match)
name: multi-organism process
 PDB ID: 1gz6 chain A
(very confident match)
coverage over query:
1-100
psy11303 166 ID: Q02337 (portable match)
name: D-beta-hydroxybutyrate dehydrogenase, mitochondrial
def:
source: Bos taurus (taxid: 9913)
 ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:99.39 (hhsearch)
coverage over query:
47-156
 ID: PF00106
score: 99.17 (hhsearch)
coverage over query:
51-157
 no hit PDB ID: 3u9l chain A
(very confident match)
coverage over query:
48-89,103-115,128-159
psy6647 62 ID: Q71R50 (portable match)
name: Dehydrogenase/reductase SDR family member 11
def:
source: Gallus gallus (taxid: 9031)
 ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:99.60 (hhsearch)
coverage over query:
1-53
 ID: PF00106
score: 99.15 (hhsearch)
coverage over query:
7-51
 no hit PDB ID: 1vl8 chain A
(very confident match)
coverage over query:
3-49
psy5437 250 ID: O70503 (confident match)
name: Estradiol 17-beta-dehydrogenase 12
def: Catalyzes the transformation of estrone (E1) into estradiol (E2), suggesting a central role in estrogen formation. Its strong expression in ovary and mammary gland suggest that it may constitute the major enzyme responsible for the conversion of E1 to E2 in females. Also has 3-ketoacyl-CoA reductase activity, reducing both long chain 3-ketoacyl-CoAs and long chain fatty acyl-CoAs, suggesting a role in long fatty acid elongation.
source: Mus musculus (taxid: 10090)
 ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:100.00 (hhsearch)
coverage over query:
1-234
 ID: PF13561
score: 100.00 (hhsearch)
coverage over query:
3-231
 ID: GO:0005783 (confident match)
name: endoplasmic reticulum
 PDB ID: 3pgx chain A
(very confident match)
coverage over query:
1-231
psy11191 81 ID: P36086 (portable match)
name: Uncharacterized oxidoreductase YKL071W
def:
source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
 ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:99.47 (hhsearch)
coverage over query:
2-66
 ID: PF13561
score: 99.72 (hhsearch)
coverage over query:
2-77
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1sny chain A
(very confident match)
coverage over query:
2-81
psy3252 475 ID: Q06136 (confident match)
name: 3-ketodihydrosphingosine reductase
def: Catalyzes the reduction of 3-ketodihydrosphingosine (KDS) to dihydrosphingosine (DHS).
source: Homo sapiens (taxid: 9606)
 ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:100.00 (hhsearch)
coverage over query:
95-436
 ID: PF13561
score: 100.00 (hhsearch)
coverage over query:
105-377
 ID: GO:0006629 (confident match)
name: lipid metabolic process
 PDB ID: 3pgx chain A
(very confident match)
coverage over query:
92-146,171-227,249-376
psy4251 292 ID: Q91WL8 (confident match)
name: WW domain-containing oxidoreductase
def: Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. Inhibits Wnt signaling, probably by sequestering DVL2 in the cytoplasm (By similarity). May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development.
source: Mus musculus (taxid: 10090)
 ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:100.00 (hhsearch)
coverage over query:
22-271
 ID: PF13561
score: 99.96 (hhsearch)
coverage over query:
39-283
 ID: GO:0006917 (confident match)
name: induction of apoptosis
 PDB ID: 3rd5 chain A
(very confident match)
coverage over query:
20-284
psy7936 222 ID: Q8BYK4 (confident match)
name: Retinol dehydrogenase 12
def: Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. Also involved in the metabolism of short-chain aldehydes. No steroid dehydrogenase activity detected. Might be the key enzyme in the formation of 11-cis-retinal from 11-cis-retinol during regeneration of the cone visual pigments.
source: Mus musculus (taxid: 10090)
 ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:99.97 (hhsearch)
coverage over query:
11-195
 ID: PF13561
score: 99.95 (hhsearch)
coverage over query:
21-202
 ID: GO:0042572 (confident match)
name: retinol metabolic process
 PDB ID: 3lf2 chain A
(very confident match)
coverage over query:
8-203
psy2854 384 ID: Q9ERI6 (portable match)
name: Retinol dehydrogenase 14
def: Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity toward 9-cis and all-trans-retinol. No steroid dehydrogenase activity detected.
source: Mus musculus (taxid: 10090)
 ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:100.00 (hhsearch)
coverage over query:
52-257
 ID: PF13561
score: 100.00 (hhsearch)
coverage over query:
63-292
 ID: GO:0045335 (confident match)
name: phagocytic vesicle
 PDB ID: 1ja9 chain A
(very confident match)
coverage over query:
52-197,214-257
psy10631 424 ID: Q8BTX9 (confident match)
name: Inactive hydroxysteroid dehydrogenase-like protein 1
def:
source: Mus musculus (taxid: 10090)
 ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:100.00 (hhsearch)
coverage over query:
82-331
 ID: PF13561
score: 99.98 (hhsearch)
coverage over query:
86-297
 ID: GO:0050062 (confident match)
name: long-chain-fatty-acyl-CoA reductase activity
 PDB ID: 3pgx chain A
(very confident match)
coverage over query:
80-297
psy16392 181 ID: O70503 (portable match)
name: Estradiol 17-beta-dehydrogenase 12
def: Catalyzes the transformation of estrone (E1) into estradiol (E2), suggesting a central role in estrogen formation. Its strong expression in ovary and mammary gland suggest that it may constitute the major enzyme responsible for the conversion of E1 to E2 in females. Also has 3-ketoacyl-CoA reductase activity, reducing both long chain 3-ketoacyl-CoAs and long chain fatty acyl-CoAs, suggesting a role in long fatty acid elongation.
source: Mus musculus (taxid: 10090)
 ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:99.96 (hhsearch)
coverage over query:
1-136
 ID: PF13561
score: 99.94 (hhsearch)
coverage over query:
6-173
 no hit PDB ID: 2uvd chain A
(very confident match)
coverage over query:
1-103,118-174
psy12399 69 no hit ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:99.00 (hhsearch)
coverage over query:
1-60
 ID: PF13561
score: 98.87 (hhsearch)
coverage over query:
1-61
 no hit PDB ID: 3r1i chain A
(very confident match)
coverage over query:
1-61
psy8930 65 no hit ID: COG0300
name: DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
score:97.66 (hhsearch)
coverage over query:
6-54
 no hit no hit PDB ID: 1yb1 chain A
(confident match)
coverage over query:
6-47
psy417 240 ID: Q05915 (very confident match)
name: GTP cyclohydrolase 1
def: May positively regulate nitric oxide synthesis in endothelial cells. May be involved in dopamine synthesis. May modify pain sensitivity and persistence.
source: Mus musculus (taxid: 10090)
 ID: COG0302
name: FolE GTP cyclohydrolase I [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
57-240
 ID: PF01227
score: 100.00 (hhsearch)
coverage over query:
60-238
 ID: GO:0005509 (very confident match)
name: calcium ion binding
 PDB ID: 1is8 chain A
(very confident match)
coverage over query:
54-238
psy8242 248 ID: Q39054 (portable match)
name: Molybdopterin biosynthesis protein CNX1
def: Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0303
name: MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
1-245
 ID: PF00994
score: 99.94 (hhsearch)
coverage over query:
41-156
 ID: GO:0005622 (confident match)
name: intracellular
 PDB ID: 2fts chain A
(very confident match)
coverage over query:
1-247
psy7342 338 ID: Q6G747 (portable match)
name: Molybdenum cofactor biosynthesis protein B
def: Maybe involved in the biosynthesis of molybdopterin.
source: Staphylococcus aureus (strain MSSA476) (taxid: 282459)
 ID: COG0303
name: MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
49-338
 ID: PF00994
score: 99.93 (hhsearch)
coverage over query:
202-336
 no hit PDB ID: 1mkz chain A
(very confident match)
coverage over query:
196-337
psy8230 251 ID: Q39054 (portable match)
name: Molybdopterin biosynthesis protein CNX1
def: Catalyzes two steps in the biosynthesis of the molybdenum cofactor. In the first step, molybdopterin is adenylated. Subsequently, molybdate is inserted into adenylated molybdopterin and AMP is released.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0303
name: MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
1-250
 ID: PF03453
score: 100.00 (hhsearch)
coverage over query:
1-207
 ID: GO:0005737 (confident match)
name: cytoplasm
 no hit
psy5222 415 ID: P57193 (confident match)
name: 3-oxoacyl-[acyl-carrier-protein] synthase 1
def: Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-10 to unsaturated C-16 and C-18 fatty acids.
source: Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806)
 ID: COG0304
name: FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
1-415
 ID: PF00109
score: 100.00 (hhsearch)
coverage over query:
1-253
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3o04 chain A
(very confident match)
coverage over query:
1-415
psy11966 99 ID: Q71SP7 (confident match)
name: Fatty acid synthase
def: Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. This multifunctional protein has 7 catalytic activities and an acyl carrier protein.
source: Bos taurus (taxid: 9913)
 ID: COG0304
name: FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:99.91 (hhsearch)
coverage over query:
1-99
 ID: PF00109
score: 99.92 (hhsearch)
coverage over query:
6-99
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2vz8 chain A
(very confident match)
coverage over query:
1-99
psy5298 109 ID: Q83E37 (portable match)
name: 3-oxoacyl-[acyl-carrier-protein] synthase 2
def: Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis.
source: Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377)
 ID: COG0304
name: FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:99.87 (hhsearch)
coverage over query:
1-109
 ID: PF00109
score: 99.90 (hhsearch)
coverage over query:
1-109
 ID: GO:0044444 (confident match)
name: cytoplasmic part
 PDB ID: 1tqy chain B
(very confident match)
coverage over query:
2-108
psy5293 359 ID: Q9D404 (confident match)
name: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial
def: May play a role in the biosynthesis of lipoic acid as well as longer chain fatty acids required for optimal mitochondrial function.
source: Mus musculus (taxid: 10090)
 ID: COG0304
name: FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
3-358
 ID: PF02801
score: 99.85 (hhsearch)
coverage over query:
212-312
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3o04 chain A
(very confident match)
coverage over query:
5-143,207-358
psy2892 452 ID: Q8FB22 (very confident match)
name: Replicative DNA helicase
def: Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with dnaC protein, primase, and other prepriming proteins.
source: Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)
 ID: COG0305
name: DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
13-452
 ID: PF03796
score: 100.00 (hhsearch)
coverage over query:
196-452
 ID: GO:0006268 (very confident match)
name: DNA unwinding involved in replication
 PDB ID: 2r6a chain A
(very confident match)
coverage over query:
13-452
psy2891 452 ID: Q8FB22 (very confident match)
name: Replicative DNA helicase
def: Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with dnaC protein, primase, and other prepriming proteins.
source: Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)
 ID: COG0305
name: DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
13-452
 ID: PF03796
score: 100.00 (hhsearch)
coverage over query:
196-452
 ID: GO:0006268 (very confident match)
name: DNA unwinding involved in replication
 PDB ID: 2r6a chain A
(very confident match)
coverage over query:
13-452
psy4520 291 ID: Q8CIW5 (portable match)
name: Twinkle protein, mitochondrial
def: Involved in mitochondrial DNA (mtDNA) metabolism. Could function as an adenine nucleotide-dependent DNA helicase. Function infered to be critical for lifetime maintenance of mtDNA integrity. May be a key regulator of mtDNA copy number in mammals.
source: Mus musculus (taxid: 10090)
 ID: COG0305
name: DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
3-250
 ID: PF03796
score: 100.00 (hhsearch)
coverage over query:
2-251
 ID: GO:0051260 (confident match)
name: protein homooligomerization
 PDB ID: 1q57 chain A
(very confident match)
coverage over query:
2-50,86-252
psy4641 229 ID: Q9Z820 (confident match)
name: Riboflavin synthase
def: Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione and L-3,4-dihydrohy-2-butanone-4-phosphate via 6,7-dimethyl-8-lumazine. The alpha subunit catalyzes the dismutation of 6,7-dimethyl-8-lumazine to riboflavin and 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione.
source: Chlamydia pneumoniae (taxid: 83558)
 ID: COG0307
name: RibC Riboflavin synthase alpha chain [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
1-206
 ID: PF00677
score: 99.96 (hhsearch)
coverage over query:
3-87
 ID: GO:0004746 (confident match)
name: riboflavin synthase activity
 PDB ID: 1i8d chain A
(very confident match)
coverage over query:
1-200
psy6925 131 ID: Q11011 (confident match)
name: Puromycin-sensitive aminopeptidase
def: Aminopeptidase with broad substrate specificity for several peptides. Involved in proteolytic events essential for cell growth and viability. May act as regulator of neuropeptide activity. Plays a role in the antigen-processing pathway for MHC class I molecules. Involved in the N-terminal trimming of cytotoxic T-cell epitope precursors. Digests the poly-Q peptides found in many cellular proteins.
source: Mus musculus (taxid: 10090)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-131
 ID: PF01433
score: 100.00 (hhsearch)
coverage over query:
1-131
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3se6 chain A
(very confident match)
coverage over query:
1-131
psy3708 240 ID: Q8SRG3 (portable match)
name: Probable M1 family aminopeptidase 2
def:
source: Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-199
 ID: PF01433
score: 100.00 (hhsearch)
coverage over query:
1-216
 ID: GO:0005829 (confident match)
name: cytosol
 no hit
psy1463 947 ID: P15144 (portable match)
name: Aminopeptidase N
def: Broad specificity aminopeptidase. Plays a role in the final digestion of peptides generated from hydrolysis of proteins by gastric and pancreatic proteases. May play a critical role in the pathogenesis of cholesterol gallstone disease. May be involved in the metabolism of regulatory peptides of diverse cell types including small intestinal and tubular epithelial cells, macrophages, granulocytes and synaptic membranes from the CNS. Found to cleave antigen peptides bound to major histocompatibility complex class II molecules of presenting cells and to degrade neurotransmitters at synaptic junctions. Is also implicated as a regulator of IL-8 bioavailability in the endometrium, and therefore may contribute to the regulation of angiogenesis. Is used as a marker for acute myeloid leukemia and plays a role in tumor invasion. In case of human coronavirus 229E (HCoV-229E) infection, serves as receptor for HCoV-229E spike glycoprotein. Mediates as well human cytomegalovirus (HCMV) infection.
source: Homo sapiens (taxid: 9606)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
236-816
 ID: PF01433
score: 100.00 (hhsearch)
coverage over query:
233-533
 ID: GO:0008233 (confident match)
name: peptidase activity
 PDB ID: 3se6 chain A
(very confident match)
coverage over query:
826-930
psy5250 1102 ID: Q10736 (portable match)
name: Aminopeptidase N (Fragment)
def: Aminopeptidase N is involved in the degradation of intracellular peptides generated by protein breakdown during normal growth as well as in response to nutrient starvation.
source: Acetobacter pasteurianus (taxid: 438)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
685-799
 ID: PF01433
score: 100.00 (hhsearch)
coverage over query:
3-290
 ID: GO:0008270 (confident match)
name: zinc ion binding
 PDB ID: 3se6 chain A
(very confident match)
coverage over query:
419-488,503-509,520-613
,685-799
psy7253 119 ID: Q95334 (confident match)
name: Glutamyl aminopeptidase
def:
source: Sus scrofa (taxid: 9823)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:99.95 (hhsearch)
coverage over query:
11-118
 ID: PF01433
score: 99.97 (hhsearch)
coverage over query:
10-118
 ID: GO:0016477 (confident match)
name: cell migration
 PDB ID: 3se6 chain A
(very confident match)
coverage over query:
9-118
psy13169 129 ID: Q24325 (confident match)
name: Transcription initiation factor TFIID subunit 2
def: TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. An essential subunit binds to core promoter DNA.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:99.81 (hhsearch)
coverage over query:
23-128
 ID: PF01433
score: 99.94 (hhsearch)
coverage over query:
7-128
 ID: GO:0033276 (confident match)
name: transcription factor TFTC complex
 PDB ID: 3cia chain A
(confident match)
coverage over query:
7-128
psy5111 132 ID: Q8SRG3 (portable match)
name: Probable M1 family aminopeptidase 2
def:
source: Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:99.83 (hhsearch)
coverage over query:
2-100
 ID: PF01433
score: 99.88 (hhsearch)
coverage over query:
1-98
 ID: GO:0043233 (confident match)
name: organelle lumen
 PDB ID: 3cia chain A
(very confident match)
coverage over query:
47-131
psy2264 148 ID: Q978U3 (portable match)
name: Tricorn protease-interacting factor F2
def: Proteases F1, F2 and F3 degrade oligopeptides produced by Tricorn (themselves probably produced by the proteasome), yielding free amino acids.
source: Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) (taxid: 273116)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-146
 ID: PF01433
score: 100.00 (hhsearch)
coverage over query:
1-146
 ID: GO:0043233 (confident match)
name: organelle lumen
 PDB ID: 3se6 chain A
(very confident match)
coverage over query:
1-146
psy16137 448 ID: Q978U3 (portable match)
name: Tricorn protease-interacting factor F2
def: Proteases F1, F2 and F3 degrade oligopeptides produced by Tricorn (themselves probably produced by the proteasome), yielding free amino acids.
source: Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) (taxid: 273116)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
102-448
 ID: PF01433
score: 100.00 (hhsearch)
coverage over query:
101-358
 ID: GO:0043233 (confident match)
name: organelle lumen
 PDB ID: 3se6 chain A
(very confident match)
coverage over query:
187-436
psy7198 128 ID: Q8SRG3 (portable match)
name: Probable M1 family aminopeptidase 2
def:
source: Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:99.72 (hhsearch)
coverage over query:
35-126
 ID: PF01433
score: 99.93 (hhsearch)
coverage over query:
2-125
 ID: GO:0071944 (confident match)
name: cell periphery
 PDB ID: 3se6 chain A
(very confident match)
coverage over query:
1-126
psy2731 537 ID: P09960 (confident match)
name: Leukotriene A-4 hydrolase
def: Epoxide hydrolase that catalyzes the final step in the biosynthesis of the proinflammatory mediator leukotriene B4. Has also aminopeptidase activity.
source: Homo sapiens (taxid: 9606)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
6-377
 ID: PF01433
score: 100.00 (hhsearch)
coverage over query:
5-296
 no hit PDB ID: 3cia chain A
(very confident match)
coverage over query:
6-146,177-179,192-522
psy5110 284 ID: P15144 (portable match)
name: Aminopeptidase N
def: Broad specificity aminopeptidase. Plays a role in the final digestion of peptides generated from hydrolysis of proteins by gastric and pancreatic proteases. May play a critical role in the pathogenesis of cholesterol gallstone disease. May be involved in the metabolism of regulatory peptides of diverse cell types including small intestinal and tubular epithelial cells, macrophages, granulocytes and synaptic membranes from the CNS. Found to cleave antigen peptides bound to major histocompatibility complex class II molecules of presenting cells and to degrade neurotransmitters at synaptic junctions. Is also implicated as a regulator of IL-8 bioavailability in the endometrium, and therefore may contribute to the regulation of angiogenesis. Is used as a marker for acute myeloid leukemia and plays a role in tumor invasion. In case of human coronavirus 229E (HCoV-229E) infection, serves as receptor for HCoV-229E spike glycoprotein. Mediates as well human cytomegalovirus (HCMV) infection.
source: Homo sapiens (taxid: 9606)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
8-281
 ID: PF01433
score: 100.00 (hhsearch)
coverage over query:
7-222
 no hit PDB ID: 3se6 chain A
(very confident match)
coverage over query:
7-243,254-268
psy2265 196 ID: Q8SRG3 (portable match)
name: Probable M1 family aminopeptidase 2
def:
source: Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
17-184
 ID: PF01433
score: 99.94 (hhsearch)
coverage over query:
16-163
 no hit PDB ID: 3se6 chain A
(very confident match)
coverage over query:
8-157
psy2201 255 ID: Q8SRG3 (portable match)
name: Probable M1 family aminopeptidase 2
def:
source: Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:99.94 (hhsearch)
coverage over query:
46-254
 ID: PF01433
score: 99.72 (hhsearch)
coverage over query:
46-156
 no hit PDB ID: 3se6 chain A
(very confident match)
coverage over query:
1-72
psy2273 434 ID: Q8SRG3 (portable match)
name: Probable M1 family aminopeptidase 2
def:
source: Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
65-425
 ID: PF01433
score: 100.00 (hhsearch)
coverage over query:
58-421
 no hit PDB ID: 3se6 chain A
(very confident match)
coverage over query:
53-422
psy13037 1094 ID: Q96ZT9 (portable match)
name: Probable aminopeptidase 1
def:
source: Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (taxid: 273063)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
5-411
 ID: PF01433
score: 100.00 (hhsearch)
coverage over query:
6-299
 no hit PDB ID: 3se6 chain A
(very confident match)
coverage over query:
458-889,911-971,987-1091
psy6165 482 ID: P09960 (portable match)
name: Leukotriene A-4 hydrolase
def: Epoxide hydrolase that catalyzes the final step in the biosynthesis of the proinflammatory mediator leukotriene B4. Has also aminopeptidase activity.
source: Homo sapiens (taxid: 9606)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:99.88 (hhsearch)
coverage over query:
113-265
 ID: PF09127
score: 99.85 (hhsearch)
coverage over query:
307-453
 no hit PDB ID: 3cia chain A
(very confident match)
coverage over query:
8-285,331-453
psy13041 81 ID: Q32LQ0 (portable match)
name: Glutamyl aminopeptidase
def: Appears to have a role in the catabolic pathway of the renin-angiotensin system. Probably plays a role in regulating growth and differentiation of early B-lineage cells.
source: Bos taurus (taxid: 9913)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:90.41 (hhsearch)
coverage over query:
8-79
 ID: PF11838
score: 99.58 (hhsearch)
coverage over query:
3-79
 ID: GO:0004177 (confident match)
name: aminopeptidase activity
 PDB ID: 3rjo chain A
(very confident match)
coverage over query:
3-80
psy14860 711 ID: Q97AJ6 (portable match)
name: Tricorn protease-interacting factor F3
def: Proteases F1, F2 and F3 degrade oligopeptides produced by Tricorn (themselves probably produced by the proteasome), yielding free amino acids.
source: Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) (taxid: 273116)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
17-642
 ID: PF11838
score: 100.00 (hhsearch)
coverage over query:
378-648
 ID: GO:0005576 (confident match)
name: extracellular region
 PDB ID: 3se6 chain A
(very confident match)
coverage over query:
573-711
psy13042 127 ID: Q32LQ0 (portable match)
name: Glutamyl aminopeptidase
def: Appears to have a role in the catabolic pathway of the renin-angiotensin system. Probably plays a role in regulating growth and differentiation of early B-lineage cells.
source: Bos taurus (taxid: 9913)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:95.25 (hhsearch)
coverage over query:
22-108
 ID: PF11838
score: 99.85 (hhsearch)
coverage over query:
6-108
 ID: GO:0008233 (confident match)
name: peptidase activity
 PDB ID: 3se6 chain A
(very confident match)
coverage over query:
7-108
psy5127 128 ID: P15144 (portable match)
name: Aminopeptidase N
def: Broad specificity aminopeptidase. Plays a role in the final digestion of peptides generated from hydrolysis of proteins by gastric and pancreatic proteases. May play a critical role in the pathogenesis of cholesterol gallstone disease. May be involved in the metabolism of regulatory peptides of diverse cell types including small intestinal and tubular epithelial cells, macrophages, granulocytes and synaptic membranes from the CNS. Found to cleave antigen peptides bound to major histocompatibility complex class II molecules of presenting cells and to degrade neurotransmitters at synaptic junctions. Is also implicated as a regulator of IL-8 bioavailability in the endometrium, and therefore may contribute to the regulation of angiogenesis. Is used as a marker for acute myeloid leukemia and plays a role in tumor invasion. In case of human coronavirus 229E (HCoV-229E) infection, serves as receptor for HCoV-229E spike glycoprotein. Mediates as well human cytomegalovirus (HCMV) infection.
source: Homo sapiens (taxid: 9606)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:96.94 (hhsearch)
coverage over query:
4-115
 ID: PF11838
score: 99.75 (hhsearch)
coverage over query:
2-106
 ID: GO:0043233 (confident match)
name: organelle lumen
 PDB ID: 3rjo chain A
(very confident match)
coverage over query:
2-127
psy1464 107 ID: P15144 (portable match)
name: Aminopeptidase N
def: Broad specificity aminopeptidase. Plays a role in the final digestion of peptides generated from hydrolysis of proteins by gastric and pancreatic proteases. May play a critical role in the pathogenesis of cholesterol gallstone disease. May be involved in the metabolism of regulatory peptides of diverse cell types including small intestinal and tubular epithelial cells, macrophages, granulocytes and synaptic membranes from the CNS. Found to cleave antigen peptides bound to major histocompatibility complex class II molecules of presenting cells and to degrade neurotransmitters at synaptic junctions. Is also implicated as a regulator of IL-8 bioavailability in the endometrium, and therefore may contribute to the regulation of angiogenesis. Is used as a marker for acute myeloid leukemia and plays a role in tumor invasion. In case of human coronavirus 229E (HCoV-229E) infection, serves as receptor for HCoV-229E spike glycoprotein. Mediates as well human cytomegalovirus (HCMV) infection.
source: Homo sapiens (taxid: 9606)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:95.95 (hhsearch)
coverage over query:
5-105
 ID: PF11838
score: 99.87 (hhsearch)
coverage over query:
3-105
 ID: GO:0044464 (confident match)
name: cell part
 PDB ID: 3rjo chain A
(very confident match)
coverage over query:
20-101
psy12534 343 ID: P15145 (portable match)
name: Aminopeptidase N
def: Broad specificity aminopeptidase. Plays a role in the final digestion of peptides generated from hydrolysis of proteins by gastric and pancreatic proteases. May be involved in the metabolism of regulatory peptides of diverse cell types and in the cleavage of peptides bound to major histocompatibility complex class II molecules of antigen presenting cells. May have a role in angiogenesis (By similarity). It is able to degrade Leu-enkephalin and Met-enkephalin but not cholecystokinin CCK8, neuromedin C (GRP-10), somatostatin-14, substance P and vasoactive intestinal peptide. In case of porcine transmissible gastroenteritis coronavirus (TGEV) and porcine respiratory coronavirus (PRCoV) infections, serves as a receptor for TGEV and PRCoV spike glycoprotein in a species-specific manner.
source: Sus scrofa (taxid: 9823)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:99.95 (hhsearch)
coverage over query:
11-323
 ID: PF11838
score: 99.76 (hhsearch)
coverage over query:
251-342
 no hit PDB ID: 3rjo chain A
(very confident match)
coverage over query:
108-146,202-343
psy7254 567 ID: Q10736 (portable match)
name: Aminopeptidase N (Fragment)
def: Aminopeptidase N is involved in the degradation of intracellular peptides generated by protein breakdown during normal growth as well as in response to nutrient starvation.
source: Acetobacter pasteurianus (taxid: 438)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:100.00 (hhsearch)
coverage over query:
1-563
 ID: PF11838
score: 100.00 (hhsearch)
coverage over query:
349-566
 no hit PDB ID: 3rjo chain A
(very confident match)
coverage over query:
281-566
psy7256 398 ID: Q8CFQ3 (portable match)
name: Intron-binding protein aquarius
def: Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre-mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing.
source: Mus musculus (taxid: 10090)
 ID: COG0308
name: PepN Aminopeptidase N [Amino acid transport and metabolism]
score:99.75 (hhsearch)
coverage over query:
51-245
 ID: PF11838
score: 98.82 (hhsearch)
coverage over query:
257-376
 no hit PDB ID: 2xdt chain A
(very confident match)
coverage over query:
51-184,201-397
psy4307 412 ID: Q8BH69 (very confident match)
name: Selenide, water dikinase 1
def: Synthesizes selenophosphate from selenide and ATP.
source: Mus musculus (taxid: 10090)
 ID: COG0309
name: HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
53-409
 ID: PF00586
score: 99.83 (hhsearch)
coverage over query:
97-194
 ID: GO:0008284 (very confident match)
name: positive regulation of cell proliferation
 PDB ID: 3fd5 chain A
(very confident match)
coverage over query:
29-412
psy9403 737 ID: P45297 (confident match)
name: Protein TldD homolog
def:
source: Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)
 ID: COG0312
name: TldD Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]
score:100.00 (hhsearch)
coverage over query:
278-736
 ID: PF00591
score: 100.00 (hhsearch)
coverage over query:
31-260
 ID: GO:0006355 (confident match)
name: regulation of transcription, DNA-dependent
 PDB ID: 1vpb chain A
(very confident match)
coverage over query:
277-605,618-705,720-736
psy8848 459 ID: P57191 (confident match)
name: Protein PmbA homolog
def:
source: Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806)
 ID: COG0312
name: TldD Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]
score:100.00 (hhsearch)
coverage over query:
20-459
 ID: PF01523
score: 100.00 (hhsearch)
coverage over query:
35-332
 no hit PDB ID: 1vpb chain A
(very confident match)
coverage over query:
16-459
psy11503 172 ID: Q7QAD7 (confident match)
name: Molybdopterin synthase catalytic subunit
def: Catalytic subunit of the molybdopterin synthase complex, a complex that catalyzes the conversion of precursor Z into molybdopterin. Acts by mediating the incorporation of 2 sulfur atoms from thiocarboxylated MOCS2A into precursor Z to generate a dithiolene group.
source: Anopheles gambiae (taxid: 7165)
 ID: COG0314
name: MoaE Molybdopterin converting factor, large subunit [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
28-167
 ID: PF02391
score: 99.97 (hhsearch)
coverage over query:
50-142
 ID: GO:0006777 (confident match)
name: Mo-molybdopterin cofactor biosynthetic process
 PDB ID: 2wp4 chain A
(very confident match)
coverage over query:
50-164
psy632 373 ID: B8IPA1 (confident match)
name: Cyclic pyranopterin monophosphate synthase accessory protein
def: Together with MoaA, is involved in the conversion of a guanosine derivative (5'-GTP) into molybdopterin precursor Z.
source: Methylobacterium nodulans (strain ORS2060 / LMG 21967) (taxid: 460265)
 ID: COG0315
name: MoaC Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
78-373
 ID: PF01967
score: 100.00 (hhsearch)
coverage over query:
91-365
 no hit PDB ID: 1ekr chain A
(very confident match)
coverage over query:
78-169,309-373
psy7477 237 ID: Q5R788 (confident match)
name: Iron-sulfur cluster assembly 2 homolog, mitochondrial
def: Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.
source: Pongo abelii (taxid: 9601)
 ID: COG0316
name: sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
105-210
 ID: PF01521
score: 99.84 (hhsearch)
coverage over query:
106-206
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 1r94 chain A
(very confident match)
coverage over query:
106-214
psy10002 145 ID: Q80W96 (confident match)
name: Iron-sulfur cluster assembly 1 homolog, mitochondrial
def: Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0316
name: sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
16-145
 ID: PF01521
score: 99.88 (hhsearch)
coverage over query:
17-141
 ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 2d2a chain A
(very confident match)
coverage over query:
15-81,97-145
psy9412 118 ID: A9AH79 (very confident match)
name: Putative iron--sulfur cluster insertion protein ErpA
def: Required for insertion of 4Fe-4S clusters.
source: Burkholderia multivorans (strain ATCC 17616 / 249) (taxid: 395019)
 ID: COG0316
name: sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
8-116
 ID: PF01521
score: 99.94 (hhsearch)
coverage over query:
9-112
 ID: GO:0051537 (very confident match)
name: 2 iron, 2 sulfur cluster binding
 PDB ID: 2apn chain A
(very confident match)
coverage over query:
7-116
psy9411 118 ID: A9AH79 (very confident match)
name: Putative iron--sulfur cluster insertion protein ErpA
def: Required for insertion of 4Fe-4S clusters.
source: Burkholderia multivorans (strain ATCC 17616 / 249) (taxid: 395019)
 ID: COG0316
name: sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
8-116
 ID: PF01521
score: 99.94 (hhsearch)
coverage over query:
9-112
 ID: GO:0051537 (very confident match)
name: 2 iron, 2 sulfur cluster binding
 PDB ID: 2apn chain A
(very confident match)
coverage over query:
7-116
psy8855 200 ID: Q8SSM2 (confident match)
name: Iron sulfur cluster assembly protein 1
def: Involved in iron homeostasis within the mitosome where it is involved in the assembly of iron-sulfur proteins. Essential for de novo biosynthesis of mitosomal iron sulfur proteins.
source: Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)
 ID: COG0316
name: sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
96-200
 ID: PF01592
score: 99.96 (hhsearch)
coverage over query:
2-103
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3lvl chain A
(very confident match)
coverage over query:
2-103
psy8734 264 ID: Q8N4P3 (confident match)
name: Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1
def: ppGpp hydrolyzing enzyme involved in starvation response.
source: Homo sapiens (taxid: 9606)
 ID: COG0317
name: SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
score:100.00 (hhsearch)
coverage over query:
77-262
 ID: PF13328
score: 99.98 (hhsearch)
coverage over query:
90-239
 ID: GO:0046872 (confident match)
name: metal ion binding
 PDB ID: 3nr1 chain A
(very confident match)
coverage over query:
82-255
psy4969 66 ID: O88813 (confident match)
name: Long-chain-fatty-acid--CoA ligase 5
def: Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL at the villus tip of the crypt-villus axis of the small intestine (By similarity). May have a role in the survival of glioma cells (By similarity). May activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage. It was suggested that it may also stimulate fatty acid oxidation. Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:99.79 (hhsearch)
coverage over query:
1-66
 ID: PF00501
score: 99.79 (hhsearch)
coverage over query:
1-66
 ID: GO:0001676 (confident match)
name: long-chain fatty acid metabolic process
 PDB ID: 3tsy chain A
(very confident match)
coverage over query:
1-66
psy12852 1102 ID: Q5RDY4 (portable match)
name: Long-chain fatty acid transport protein 4
def: Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. Appears to be the principal fatty acid transporter in small intestinal enterocytes. Plays a role in the formation of the epidermal barrier. Required for fat absorption in early embryogenesis. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids.
source: Pongo abelii (taxid: 9601)
 ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
482-1008
 ID: PF00501
score: 100.00 (hhsearch)
coverage over query:
492-913
 ID: GO:0001676 (confident match)
name: long-chain fatty acid metabolic process
 PDB ID: 3r44 chain A
(very confident match)
coverage over query:
469-828,840-1007
psy4547 92 ID: O68008 (confident match)
name: Bacitracin synthase 3
def: Induces peptide synthesis, activates and incorporates five amino acids, forms a thiazoline ring between the first two amino acids and incoporates a D-glutamine in the fourth position.
source: Bacillus licheniformis (taxid: 1402)
 ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:99.92 (hhsearch)
coverage over query:
2-92
 ID: PF00501
score: 99.71 (hhsearch)
coverage over query:
1-72
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2vsq chain A
(very confident match)
coverage over query:
1-92
psy5015 94 ID: Q8VCW8 (confident match)
name: Acyl-CoA synthetase family member 2, mitochondrial
def: Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.
source: Mus musculus (taxid: 10090)
 ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:99.94 (hhsearch)
coverage over query:
3-93
 ID: PF00501
score: 99.15 (hhsearch)
coverage over query:
4-34
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3r44 chain A
(very confident match)
coverage over query:
4-93
psy8225 479 ID: Q5RDY4 (confident match)
name: Long-chain fatty acid transport protein 4
def: Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. Appears to be the principal fatty acid transporter in small intestinal enterocytes. Plays a role in the formation of the epidermal barrier. Required for fat absorption in early embryogenesis. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids.
source: Pongo abelii (taxid: 9601)
 ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
45-479
 ID: PF00501
score: 100.00 (hhsearch)
coverage over query:
53-479
 ID: GO:0006646 (confident match)
name: phosphatidylethanolamine biosynthetic process
 PDB ID: 3r44 chain A
(very confident match)
coverage over query:
43-170,182-397,408-479
psy4966 149 ID: B7NHE1 (portable match)
name: Probable crotonobetaine/carnitine-CoA ligase
def: Could catalyze the transfer of CoA to carnitine, generating the initial carnitinyl-CoA needed for the CaiB reaction cycle.
source: Escherichia coli O7:K1 (strain IAI39 / ExPEC) (taxid: 585057)
 ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:99.97 (hhsearch)
coverage over query:
1-146
 ID: PF00501
score: 99.77 (hhsearch)
coverage over query:
1-91
 ID: GO:0031090 (confident match)
name: organelle membrane
 PDB ID: 3r44 chain A
(very confident match)
coverage over query:
1-147
psy2835 305 ID: Q5ZKR7 (portable match)
name: Long-chain-fatty-acid--CoA ligase ACSBG2
def: Mediates activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation.
source: Gallus gallus (taxid: 9031)
 ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
3-292
 ID: PF00501
score: 100.00 (hhsearch)
coverage over query:
5-289
 ID: GO:0044444 (confident match)
name: cytoplasmic part
 PDB ID: 4fuq chain A
(very confident match)
coverage over query:
3-303
psy4550 251 ID: O31782 (portable match)
name: Polyketide synthase PksN
def: Involved in some intermediate steps for the synthesis of the antibiotic polyketide bacillaene which is involved in secondary metabolism.
source: Bacillus subtilis (strain 168) (taxid: 224308)
 ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
9-249
 ID: PF00501
score: 100.00 (hhsearch)
coverage over query:
19-249
 ID: GO:0044550 (confident match)
name: secondary metabolite biosynthetic process
 PDB ID: 3rg2 chain A
(very confident match)
coverage over query:
11-250
psy9665 207 ID: Q54P79 (portable match)
name: Probable 4-coumarate--CoA ligase 3
def:
source: Dictyostelium discoideum (taxid: 44689)
 ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
1-204
 ID: PF00501
score: 99.97 (hhsearch)
coverage over query:
1-195
 ID: GO:0044711 (confident match)
name: single-organism biosynthetic process
 PDB ID: 2d1s chain A
(very confident match)
coverage over query:
2-205
psy7295 165 no hit ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:99.97 (hhsearch)
coverage over query:
1-164
 ID: PF00501
score: 99.79 (hhsearch)
coverage over query:
1-79
 ID: GO:0047760 (confident match)
name: butyrate-CoA ligase activity
 no hit
psy9226 548 ID: B5BL55 (confident match)
name: Probable crotonobetaine/carnitine-CoA ligase
def: Could catalyze the transfer of CoA to carnitine, generating the initial carnitinyl-CoA needed for the CaiB reaction cycle.
source: Salmonella paratyphi A (strain AKU_12601) (taxid: 554290)
 ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
15-548
 ID: PF00501
score: 100.00 (hhsearch)
coverage over query:
26-521
 ID: GO:0070328 (confident match)
name: triglyceride homeostasis
 PDB ID: 3r44 chain A
(very confident match)
coverage over query:
9-148,160-374,385-415
,477-548
psy16164 214 ID: Q5ZJ43 (portable match)
name: Exocyst complex component 8
def: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.
source: Gallus gallus (taxid: 9031)
 ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:99.53 (hhsearch)
coverage over query:
74-163
 ID: PF00501
score: 99.55 (hhsearch)
coverage over query:
73-163
 no hit PDB ID: 3g7s chain A
(very confident match)
coverage over query:
51-163
psy13046 365 ID: Q8VCW8 (portable match)
name: Acyl-CoA synthetase family member 2, mitochondrial
def: Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.
source: Mus musculus (taxid: 10090)
 ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
179-365
 ID: PF00501
score: 99.81 (hhsearch)
coverage over query:
181-301
 no hit PDB ID: 4fuq chain A
(very confident match)
coverage over query:
182-365
psy5016 485 ID: Q8VCW8 (portable match)
name: Acyl-CoA synthetase family member 2, mitochondrial
def: Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.
source: Mus musculus (taxid: 10090)
 ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:100.00 (hhsearch)
coverage over query:
224-485
 ID: PF00501
score: 99.89 (hhsearch)
coverage over query:
226-421
 no hit PDB ID: 3r44 chain A
(very confident match)
coverage over query:
225-485
psy4975 126 ID: B7HTW3 (portable match)
name: 2-succinylbenzoate--CoA ligase
def: Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA).
source: Bacillus cereus (strain AH187) (taxid: 405534)
 ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:99.93 (hhsearch)
coverage over query:
2-119
 ID: PF13193
score: 99.68 (hhsearch)
coverage over query:
29-107
 ID: GO:0001676 (confident match)
name: long-chain fatty acid metabolic process
 PDB ID: 3tsy chain A
(very confident match)
coverage over query:
2-123
psy8157 191 ID: Q5RDY4 (portable match)
name: Long-chain fatty acid transport protein 4
def: Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. Appears to be the principal fatty acid transporter in small intestinal enterocytes. Plays a role in the formation of the epidermal barrier. Required for fat absorption in early embryogenesis. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids.
source: Pongo abelii (taxid: 9601)
 ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:99.83 (hhsearch)
coverage over query:
9-155
 ID: PF13193
score: 99.57 (hhsearch)
coverage over query:
64-143
 ID: GO:0005789 (confident match)
name: endoplasmic reticulum membrane
 PDB ID: 1pg4 chain A
(confident match)
coverage over query:
12-155
psy77 75 ID: Q8VCW8 (confident match)
name: Acyl-CoA synthetase family member 2, mitochondrial
def: Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.
source: Mus musculus (taxid: 10090)
 ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:98.70 (hhsearch)
coverage over query:
3-51
 ID: PF13193
score: 98.40 (hhsearch)
coverage over query:
4-39
 ID: GO:0005875 (confident match)
name: microtubule associated complex
 PDB ID: 2v7b chain A
(very confident match)
coverage over query:
4-47
psy8228 149 ID: Q5RDY4 (portable match)
name: Long-chain fatty acid transport protein 4
def: Involved in translocation of long-chain fatty acids (LFCA) across the plasma membrane. Appears to be the principal fatty acid transporter in small intestinal enterocytes. Plays a role in the formation of the epidermal barrier. Required for fat absorption in early embryogenesis. Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids.
source: Pongo abelii (taxid: 9601)
 ID: COG0318
name: CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
score:99.77 (hhsearch)
coverage over query:
1-115
 ID: PF13193
score: 99.64 (hhsearch)
coverage over query:
10-83
 no hit PDB ID: 1mdb chain A
(very confident match)
coverage over query:
1-85
psy2895 293 ID: A2S5Y9 (very confident match)
name: Lipoyl synthase
def: Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
source: Burkholderia mallei (strain NCTC 10229) (taxid: 412022)
 ID: COG0320
name: LipA Lipoate synthase [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
9-292
 ID: PF04055
score: 99.83 (hhsearch)
coverage over query:
66-229
 ID: GO:0009249 (very confident match)
name: protein lipoylation
 PDB ID: 3t7v chain A
(very confident match)
coverage over query:
27-244
psy6794 165 ID: Q99M04 (confident match)
name: Lipoyl synthase, mitochondrial
def: Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
source: Mus musculus (taxid: 10090)
 ID: COG0320
name: LipA Lipoate synthase [Coenzyme metabolism]
score:99.97 (hhsearch)
coverage over query:
1-101
 no hit ID: GO:0005739 (confident match)
name: mitochondrion
 PDB ID: 1olt chain A
(portable match)
coverage over query:
4-38
psy6796 123 ID: Q2LYK1 (confident match)
name: Lipoyl synthase, mitochondrial
def: Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
source: Drosophila pseudoobscura pseudoobscura (taxid: 46245)
 ID: COG0320
name: LipA Lipoate synthase [Coenzyme metabolism]
score:99.95 (hhsearch)
coverage over query:
46-108
 no hit ID: GO:0044237 (confident match)
name: cellular metabolic process
 no hit
psy3135 229 ID: Q0VFH3 (confident match)
name: Putative lipoyltransferase 2, mitochondrial
def: Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
source: Xenopus tropicalis (taxid: 8364)
 ID: COG0321
name: LipB Lipoate-protein ligase B [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
4-216
 ID: PF03099
score: 99.61 (hhsearch)
coverage over query:
54-166
 ID: GO:0009249 (confident match)
name: protein lipoylation
 PDB ID: 1w66 chain A
(very confident match)
coverage over query:
3-217
psy6495 235 ID: Q0VFH3 (confident match)
name: Putative lipoyltransferase 2, mitochondrial
def: Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
source: Xenopus tropicalis (taxid: 8364)
 ID: COG0321
name: LipB Lipoate-protein ligase B [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
4-221
 ID: PF03099
score: 99.72 (hhsearch)
coverage over query:
54-172
 ID: GO:0009249 (confident match)
name: protein lipoylation
 PDB ID: 1w66 chain A
(very confident match)
coverage over query:
3-224
psy2898 222 ID: A4G9C5 (very confident match)
name: Octanoyltransferase
def: Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate-dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
source: Herminiimonas arsenicoxydans (taxid: 204773)
 ID: COG0321
name: LipB Lipoate-protein ligase B [Coenzyme metabolism]
score:100.00 (hhsearch)
coverage over query:
10-221
 ID: PF03099
score: 99.45 (hhsearch)
coverage over query:
56-180
 ID: GO:0010629 (confident match)
name: negative regulation of gene expression
 PDB ID: 1w66 chain A
(very confident match)
coverage over query:
5-221
psy1955 512 ID: P40692 (confident match)
name: DNA mismatch repair protein Mlh1
def: Heterodimerizes with PMS2 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (MSH2-MSH6) or MutS beta (MSH2-MSH6) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of PMS2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing the mismatch. DNA methylation would prevent cleavage and therefore assure that only the newly mutated DNA strand is going to be corrected. MutL alpha (MLH1-PMS2) interacts physically with the clamp loader subunits of DNA polymerase III, suggesting that it may play a role to recruit the DNA polymerase III to the site of the MMR. Also implicated in DNA damage signaling, a process which induces cell cycle arrest and can lead to apoptosis in case of major DNA damages. Heterodimerizes with MLH3 to form MutL gamma which plays a role in meiosis.
source: Homo sapiens (taxid: 9606)
 ID: COG0323
name: MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
3-306
 ID: PF01119
score: 99.93 (hhsearch)
coverage over query:
191-301
 ID: GO:0030983 (confident match)
name: mismatched DNA binding
 PDB ID: 3na3 chain A
(very confident match)
coverage over query:
5-126
psy13676 200 ID: B1H0C7 (portable match)
name: DNA mismatch repair protein MutL
def: This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
source: Uncultured termite group 1 bacterium phylotype Rs-D17 (taxid: 471821)
 ID: COG0323
name: MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
score:99.71 (hhsearch)
coverage over query:
77-156
 ID: PF08676
score: 99.82 (hhsearch)
coverage over query:
73-156
 ID: GO:0032139 (confident match)
name: dinucleotide insertion or deletion binding
 PDB ID: 1h7s chain A
(confident match)
coverage over query:
38-111
psy1957 149 ID: Q9P7W6 (portable match)
name: Putative MutL protein homolog 1
def: This protein is involved in the repair of mismatches in DNA.
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0323
name: MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
score:97.23 (hhsearch)
coverage over query:
29-78
 ID: PF08676
score: 97.42 (hhsearch)
coverage over query:
35-149
 ID: GO:0044446 (confident match)
name: intracellular organelle part
 PDB ID: 3rbn chain A
(very confident match)
coverage over query:
3-149
psy13670 380 ID: P54278 (confident match)
name: Mismatch repair endonuclease PMS2
def: Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MLH1 to form MutL alpha. DNA repair is initiated by MutS alpha (MSH2-MSH6) or MutS beta (MSH2-MSH6) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of PMS2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing the mismatch. DNA methylation would prevent cleavage and therefore assure that only the newly mutated DNA strand is going to be corrected. MulL alpha (MLH1-PMS2) interacts physically with the clamp loader subunits of DNA polymerase III, suggesting that it may play a role to recruit the DNA polymerase III to the site of the MMR. Also implicated in DNA damage signaling, a process which induces cell cycle arrest and can lead to apoptosis in case of major DNA damages.
source: Homo sapiens (taxid: 9606)
 ID: COG0323
name: MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
207-380
 ID: PF08676
score: 100.00 (hhsearch)
coverage over query:
211-357
 ID: GO:0050896 (confident match)
name: response to stimulus
 PDB ID: 3ncv chain A
(very confident match)
coverage over query:
207-380
psy8492 489 ID: P29773 (portable match)
name: Protein C-ets-2 (Fragment)
def:
source: Lytechinus variegatus (taxid: 7654)
 ID: COG0323
name: MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
160-430
 ID: PF08676
score: 99.94 (hhsearch)
coverage over query:
277-376
 no hit PDB ID: 2nny chain A
(very confident match)
coverage over query:
410-487
psy1958 202 ID: P40692 (confident match)
name: DNA mismatch repair protein Mlh1
def: Heterodimerizes with PMS2 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (MSH2-MSH6) or MutS beta (MSH2-MSH6) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of PMS2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing the mismatch. DNA methylation would prevent cleavage and therefore assure that only the newly mutated DNA strand is going to be corrected. MutL alpha (MLH1-PMS2) interacts physically with the clamp loader subunits of DNA polymerase III, suggesting that it may play a role to recruit the DNA polymerase III to the site of the MMR. Also implicated in DNA damage signaling, a process which induces cell cycle arrest and can lead to apoptosis in case of major DNA damages. Heterodimerizes with MLH3 to form MutL gamma which plays a role in meiosis.
source: Homo sapiens (taxid: 9606)
 ID: COG0323
name: MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
score:99.81 (hhsearch)
coverage over query:
144-200
 ID: PF08676
score: 98.89 (hhsearch)
coverage over query:
148-200
 no hit PDB ID: 3rbn chain A
(very confident match)
coverage over query:
114-201
psy13669 172 ID: P54278 (confident match)
name: Mismatch repair endonuclease PMS2
def: Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MLH1 to form MutL alpha. DNA repair is initiated by MutS alpha (MSH2-MSH6) or MutS beta (MSH2-MSH6) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of PMS2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing the mismatch. DNA methylation would prevent cleavage and therefore assure that only the newly mutated DNA strand is going to be corrected. MulL alpha (MLH1-PMS2) interacts physically with the clamp loader subunits of DNA polymerase III, suggesting that it may play a role to recruit the DNA polymerase III to the site of the MMR. Also implicated in DNA damage signaling, a process which induces cell cycle arrest and can lead to apoptosis in case of major DNA damages.
source: Homo sapiens (taxid: 9606)
 ID: COG0323
name: MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
1-171
 ID: PF13589
score: 99.73 (hhsearch)
coverage over query:
7-110
 ID: GO:0032138 (confident match)
name: single base insertion or deletion binding
 PDB ID: 1h7s chain A
(very confident match)
coverage over query:
1-171
psy5349 213 ID: A3D022 (portable match)
name: DNA mismatch repair protein MutL
def: This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
source: Shewanella baltica (strain OS155 / ATCC BAA-1091) (taxid: 325240)
 ID: COG0323
name: MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
1-210
 ID: PF13589
score: 99.69 (hhsearch)
coverage over query:
23-126
 ID: GO:0043234 (confident match)
name: protein complex
 PDB ID: 1h7s chain A
(very confident match)
coverage over query:
2-212
psy7554 115 ID: Q94ID2 (confident match)
name: Adenylate isopentenyltransferase 5, chloroplastic
def: Involved in cytokinin biosynthesis. Catalyzes the transfer of an isopentenyl group from dimethylallyl diphosphate (DMAPP) to ATP and ADP.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0324
name: MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
25-112
 ID: PF01715
score: 99.85 (hhsearch)
coverage over query:
57-112
 ID: GO:0009536 (confident match)
name: plastid
 PDB ID: 3d3q chain A
(very confident match)
coverage over query:
25-111
psy15752 110 ID: Q9ZUX7 (portable match)
name: tRNA dimethylallyltransferase 2
def: Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A). Involved in the cis-type cytokinin biosynthesis.
source: Arabidopsis thaliana (taxid: 3702)
 ID: COG0324
name: MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
4-108
 ID: PF01715
score: 100.00 (hhsearch)
coverage over query:
5-108
 ID: GO:0043231 (confident match)
name: intracellular membrane-bounded organelle
 PDB ID: 3eph chain A
(very confident match)
coverage over query:
5-108
psy17228 99 ID: B2G870 (portable match)
name: tRNA dimethylallyltransferase
def: Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).
source: Lactobacillus reuteri (strain JCM 1112) (taxid: 557433)
 ID: COG0324
name: MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
score:99.82 (hhsearch)
coverage over query:
17-98
 ID: PF01715
score: 99.86 (hhsearch)
coverage over query:
16-98
 no hit PDB ID: 3eph chain A
(very confident match)
coverage over query:
15-98
psy8556 298 ID: B2T068 (confident match)
name: tRNA dimethylallyltransferase
def: Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).
source: Burkholderia phytofirmans (strain DSM 17436 / PsJN) (taxid: 398527)
 ID: COG0324
name: MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
36-285
 ID: PF01715
score: 100.00 (hhsearch)
coverage over query:
71-281
 no hit PDB ID: 3crm chain A
(very confident match)
coverage over query:
37-295
psy17229 131 ID: Q80UN9 (portable match)
name: tRNA dimethylallyltransferase, mitochondrial
def: Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 of both cytosolic and mitochondrial tRNAs, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).
source: Mus musculus (taxid: 10090)
 ID: COG0324
name: MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
score:99.97 (hhsearch)
coverage over query:
3-131
 ID: PF01715
score: 100.00 (hhsearch)
coverage over query:
3-131
 no hit PDB ID: 3d3q chain A
(very confident match)
coverage over query:
3-67,80-131
psy10921 269 ID: Q80UN9 (portable match)
name: tRNA dimethylallyltransferase, mitochondrial
def: Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 of both cytosolic and mitochondrial tRNAs, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).
source: Mus musculus (taxid: 10090)
 ID: COG0324
name: MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
score:99.94 (hhsearch)
coverage over query:
2-164
 ID: PF01715
score: 99.96 (hhsearch)
coverage over query:
2-161
 no hit PDB ID: 3eph chain A
(very confident match)
coverage over query:
2-79,111-246
psy10922 362 no hit ID: COG0324
name: MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
score:100.00 (hhsearch)
coverage over query:
24-321
 ID: PF01715
score: 100.00 (hhsearch)
coverage over query:
34-314
 no hit PDB ID: 3crm chain A
(confident match)
coverage over query:
26-315
psy2326 181 ID: P52057 (confident match)
name: Proline synthase co-transcribed bacterial homolog protein
def:
source: Caenorhabditis elegans (taxid: 6239)
 ID: COG0325
name: Predicted enzyme with a TIM-barrel fold [General function prediction only]
score:100.00 (hhsearch)
coverage over query:
6-181
 ID: PF01168
score: 99.79 (hhsearch)
coverage over query:
8-179
 ID: GO:0005622 (confident match)
name: intracellular
 PDB ID: 3r79 chain A
(very confident match)
coverage over query:
5-81,109-181
psy2327 97 ID: Q5R4Z1 (confident match)
name: Proline synthase co-transcribed bacterial homolog protein
def:
source: Pongo abelii (taxid: 9601)
 ID: COG0325
name: Predicted enzyme with a TIM-barrel fold [General function prediction only]
score:100.00 (hhsearch)
coverage over query:
1-92
 ID: PF01168
score: 97.34 (hhsearch)
coverage over query:
5-89
 ID: GO:0030170 (confident match)
name: pyridoxal phosphate binding
 PDB ID: 3sy1 chain A
(very confident match)
coverage over query:
3-64
psy15896 492 ID: A3QF50 (confident match)
name: Chaperone protein HtpG
def: Molecular chaperone. Has ATPase activity.
source: Shewanella loihica (strain ATCC BAA-1088 / PV-4) (taxid: 323850)
 ID: COG0326
name: HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
1-492
 ID: PF00183
score: 100.00 (hhsearch)
coverage over query:
28-492
 ID: GO:0005811 (confident match)
name: lipid particle
 PDB ID: 2gq0 chain A
(very confident match)
coverage over query:
100-366,390-416
psy13235 186 ID: P41148 (confident match)
name: Endoplasmin
def: Molecular chaperone that functions in the processing and transport of secreted proteins. Functions in endoplasmic reticulum associated degradation (ERAD). Has ATPase activity.
source: Canis familiaris (taxid: 9615)
 ID: COG0326
name: HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
score:99.92 (hhsearch)
coverage over query:
1-126
 ID: PF00183
score: 100.00 (hhsearch)
coverage over query:
1-138
 ID: GO:0005811 (confident match)
name: lipid particle
 PDB ID: 2o1u chain A
(very confident match)
coverage over query:
1-132
psy10019 388 ID: P02828 (confident match)
name: Heat shock protein 83
def: Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co-chaperones that modulate its substrate recognition, ATPase cycle and chaperone function.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0326
name: HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
19-229
 ID: PF00183
score: 99.96 (hhsearch)
coverage over query:
257-388
 ID: GO:0005829 (very confident match)
name: cytosol
 PDB ID: 1yc1 chain A
(very confident match)
coverage over query:
17-237
psy4716 334 ID: P02828 (confident match)
name: Heat shock protein 83
def: Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co-chaperones that modulate its substrate recognition, ATPase cycle and chaperone function.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0326
name: HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
80-301
 ID: PF00183
score: 100.00 (hhsearch)
coverage over query:
78-311
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3q6m chain A
(very confident match)
coverage over query:
79-326
psy15683 304 ID: P02828 (confident match)
name: Heat shock protein 83
def: Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co-chaperones that modulate its substrate recognition, ATPase cycle and chaperone function.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0326
name: HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
1-213
 ID: PF00183
score: 100.00 (hhsearch)
coverage over query:
1-223
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3q6m chain A
(very confident match)
coverage over query:
1-238
psy15112 73 ID: P02828 (confident match)
name: Heat shock protein 83
def: Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co-chaperones that modulate its substrate recognition, ATPase cycle and chaperone function.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0326
name: HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
score:92.97 (hhsearch)
coverage over query:
7-37
 ID: PF00183
score: 98.97 (hhsearch)
coverage over query:
7-73
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3q6m chain A
(very confident match)
coverage over query:
8-73
psy4704 123 ID: P02828 (confident match)
name: Heat shock protein 83
def: Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co-chaperones that modulate its substrate recognition, ATPase cycle and chaperone function.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0326
name: HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
score:96.11 (hhsearch)
coverage over query:
25-87
 ID: PF00183
score: 98.96 (hhsearch)
coverage over query:
54-123
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 3q6m chain A
(very confident match)
coverage over query:
54-123
psy13239 182 ID: P08113 (confident match)
name: Endoplasmin
def: Molecular chaperone that functions in the processing and transport of secreted proteins. Functions in endoplasmic reticulum associated degradation (ERAD). Has ATPase activity.
source: Mus musculus (taxid: 10090)
 ID: COG0326
name: HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
3-182
 ID: PF00183
score: 100.00 (hhsearch)
coverage over query:
4-182
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2o1u chain A
(very confident match)
coverage over query:
4-182
psy2391 642 ID: Q7WQ31 (very confident match)
name: Chaperone protein HtpG
def: Molecular chaperone. Has ATPase activity.
source: Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) (taxid: 257310)
 ID: COG0326
name: HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
12-640
 ID: PF00183
score: 100.00 (hhsearch)
coverage over query:
195-641
 ID: GO:0005829 (very confident match)
name: cytosol
 PDB ID: 2gq0 chain A
(very confident match)
coverage over query:
244-512,535-561
psy13233 704 ID: P08113 (confident match)
name: Endoplasmin
def: Molecular chaperone that functions in the processing and transport of secreted proteins. Functions in endoplasmic reticulum associated degradation (ERAD). Has ATPase activity.
source: Mus musculus (taxid: 10090)
 ID: COG0326
name: HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
61-665
 ID: PF00183
score: 100.00 (hhsearch)
coverage over query:
246-666
 ID: GO:0043231 (confident match)
name: intracellular membrane-bounded organelle
 PDB ID: 1qy5 chain A
(very confident match)
coverage over query:
60-331
psy16067 1386 ID: P04810 (portable match)
name: Heat shock protein 83 (Fragment)
def: Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co-chaperones that modulate its substrate recognition, ATPase cycle and chaperone function.
source: Drosophila simulans (taxid: 7240)
 ID: COG0326
name: HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
1151-1373
 ID: PF03098
score: 100.00 (hhsearch)
coverage over query:
611-1171
 ID: GO:0016887 (confident match)
name: ATPase activity
 PDB ID: 2cg9 chain A
(very confident match)
coverage over query:
1224-1378
psy15682 224 ID: P02828 (confident match)
name: Heat shock protein 83
def: Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co-chaperones that modulate its substrate recognition, ATPase cycle and chaperone function.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0326
name: HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
1-189
 ID: PF13589
score: 99.38 (hhsearch)
coverage over query:
25-124
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 1yc1 chain A
(very confident match)
coverage over query:
1-32,49-196
psy15111 93 ID: P07901 (confident match)
name: Heat shock protein HSP 90-alpha
def: Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co-chaperones that modulate its substrate recognition, ATPase cycle and chaperone function.
source: Mus musculus (taxid: 10090)
 ID: COG0326
name: HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
score:99.83 (hhsearch)
coverage over query:
36-90
 ID: PF13589
score: 94.14 (hhsearch)
coverage over query:
57-75
 ID: GO:0005829 (very confident match)
name: cytosol
 PDB ID: 2cg9 chain A
(very confident match)
coverage over query:
37-89
psy15895 124 ID: Q9CQN1 (confident match)
name: Heat shock protein 75 kDa, mitochondrial
def: Chaperone that expresses an ATPase activity.
source: Mus musculus (taxid: 10090)
 ID: COG0326
name: HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
score:99.91 (hhsearch)
coverage over query:
23-124
 ID: PF13589
score: 98.93 (hhsearch)
coverage over query:
48-122
 ID: GO:0005829 (confident match)
name: cytosol
 PDB ID: 2o1u chain A
(very confident match)
coverage over query:
8-124
psy14815 479 ID: Q32PJ6 (confident match)
name: Probable cytosolic iron-sulfur protein assembly protein CIAO1
def: Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins. Seems to specifically modulate the transactivation activity of WT1. As part of the mitotic spindle-associated MMXD complex it may play a role in chromosome segregation.
source: Bos taurus (taxid: 9913)
 ID: COG0327
name: Uncharacterized conserved protein [Function unknown]
score:99.96 (hhsearch)
coverage over query:
355-476
 ID: PF01784
score: 100.00 (hhsearch)
coverage over query:
359-476
 ID: GO:0097361 (confident match)
name: CIA complex
 no hit
psy18093 411 ID: Q4V7D6 (portable match)
name: NIF3-like protein 1
def:
source: Rattus norvegicus (taxid: 10116)
 ID: COG0327
name: Uncharacterized conserved protein [Function unknown]
score:100.00 (hhsearch)
coverage over query:
40-408
 ID: PF01784
score: 100.00 (hhsearch)
coverage over query:
38-390
 no hit PDB ID: 2gx8 chain A
(very confident match)
coverage over query:
39-141,152-248,282-309
,347-411
psy2388 159 ID: Q9JWG6 (portable match)
name: UPF0135 protein NMA0382
def:
source: Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587)
 ID: COG0327
name: Uncharacterized conserved protein [Function unknown]
score:100.00 (hhsearch)
coverage over query:
1-159
 ID: PF01784
score: 100.00 (hhsearch)
coverage over query:
1-158
 no hit PDB ID: 1nmo chain A
(very confident match)
coverage over query:
1-159
psy18092 183 ID: Q9NK57 (confident match)
name: NIF3-like protein 1
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0327
name: Uncharacterized conserved protein [Function unknown]
score:99.98 (hhsearch)
coverage over query:
17-182
 ID: PF01784
score: 100.00 (hhsearch)
coverage over query:
17-182
 no hit PDB ID: 2fyw chain A
(very confident match)
coverage over query:
17-182
psy3458 151 ID: B1IPU4 (confident match)
name: Ribonuclease H
def: Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
source: Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) (taxid: 481805)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:100.00 (hhsearch)
coverage over query:
5-150
 ID: PF00075
score: 99.96 (hhsearch)
coverage over query:
5-150
 ID: GO:0044424 (confident match)
name: intracellular part
 PDB ID: 2qkb chain A
(very confident match)
coverage over query:
3-150
psy874 191 ID: O70338 (portable match)
name: Ribonuclease H1
def: Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
source: Mus musculus (taxid: 10090)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.97 (hhsearch)
coverage over query:
5-165
 ID: PF00075
score: 99.68 (hhsearch)
coverage over query:
5-89
 no hit PDB ID: 2qkb chain A
(very confident match)
coverage over query:
4-126,137-164
psy9180 491 ID: P03371 (portable match)
name: Pol polyprotein
def: During replicative cycle of retroviruses, the reverse-transcribed viral DNA is integrated into the host chromosome by the viral integrase enzyme. RNase H activity is associated with the reverse transcriptase.
source: Equus caballus (taxid: 9796)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.80 (hhsearch)
coverage over query:
148-275
 ID: PF00075
score: 99.79 (hhsearch)
coverage over query:
148-272
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
147-271
psy216 650 ID: P03371 (portable match)
name: Pol polyprotein
def: During replicative cycle of retroviruses, the reverse-transcribed viral DNA is integrated into the host chromosome by the viral integrase enzyme. RNase H activity is associated with the reverse transcriptase.
source: Equus caballus (taxid: 9796)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.87 (hhsearch)
coverage over query:
512-645
 ID: PF00075
score: 99.82 (hhsearch)
coverage over query:
511-642
 no hit PDB ID: 1mu2 chain A
(very confident match)
coverage over query:
510-642
psy5302 333 ID: P11204 (portable match)
name: Pol polyprotein
def: During replicative cycle of retroviruses, the reverse-transcribed viral DNA is integrated into the host chromosome by the viral integrase enzyme. RNase H activity is associated with the reverse transcriptase.
source: Equus caballus (taxid: 9796)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.89 (hhsearch)
coverage over query:
97-228
 ID: PF00075
score: 99.88 (hhsearch)
coverage over query:
97-225
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
96-224
psy11456 574 ID: P16425 (portable match)
name: Putative 115 kDa protein in type-1 retrotransposable element R1DM
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.70 (hhsearch)
coverage over query:
312-437
 ID: PF00075
score: 99.80 (hhsearch)
coverage over query:
311-435
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
310-434
psy17815 599 ID: P16425 (portable match)
name: Putative 115 kDa protein in type-1 retrotransposable element R1DM
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.76 (hhsearch)
coverage over query:
337-463
 ID: PF00075
score: 99.82 (hhsearch)
coverage over query:
336-460
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
334-459
psy16749 821 ID: Q28824 (portable match)
name: Myosin light chain kinase, smooth muscle
def: Calcium/calmodulin-dependent myosin light chain kinase implicated in smooth muscle contraction via phosphorylation of myosin light chains (MLC). Also regulates actin-myosin interaction through a non-kinase activty. Phosphorylates PTK2B/PYK2 and myosin light-chains. Involved in the inflammatory response (e.g. apoptosis, vascular permeability, leukocyte diapedesis), cell motility and morphology, airway hyperreactivity and other activities relevant to asthma. Required for tonic airway smooth muscle contraction that is necessary for physiological and asthmatic airway resistance. Necessary for gastrointestinal motility. Implicated in the regulation of endothelial as well as vascular permeability, probably via the regulation of cytoskeletal rearrangements. In the nervous system it has been shown to control the growth initiation of astrocytic processes in culture and to participate in transmitter release at synapses formed between cultured sympathetic ganglion cells. Critical participant in signaling sequences that result in fibroblast apoptosis. Plays a role in the regulation of epithelial cell survival. Required for epithelial wound healing, especially during actomyosin ring contraction during purse-string wound closure. Mediates RhoA-dependent membrane blebbing. Triggers TRPC5 channel activity in a calcium-dependent signaling, by inducing its subcellular localization at the plasma membrane. Promotes cell migration (including tumor cells) and tumor metastasis. PTK2B/PYK2 activation by phosphorylation mediates ITGB2 activation and is thus essential to trigger neutrophil transmigration during acute lung injury (ALI). May regulate optic nerve head astrocyte migration. Probably involved in mitotic cytoskeletal regulation. Regulates tight junction probably by modulating ZO-1 exchange in the perijunctional actomyosin ring. Mediates burn-induced microvascular barrier injury; triggers endothelial contraction in the development of microvascular hyperpermeability by phosphorylating MLC. Essential for intestinal barrier dysfunction. Mediates Giardia spp.-mediated reduced epithelial barrier function during giardiasis intestinal infection via reorganization of cytoskeletal F-actin and tight junctional ZO-1. Necessary for hypotonicity-induced Ca(2+) entry and subsequent activation of volume-sensitive organic osmolyte/anion channels (VSOAC) in cervical cancer cells.
source: Bos taurus (taxid: 9913)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.84 (hhsearch)
coverage over query:
675-806
 ID: PF00075
score: 99.83 (hhsearch)
coverage over query:
674-804
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
671-802
psy15450 659 ID: Q2IJL8 (portable match)
name: Ribonuclease H
def: Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
source: Anaeromyxobacter dehalogenans (strain 2CP-C) (taxid: 290397)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.88 (hhsearch)
coverage over query:
245-387
 ID: PF00075
score: 99.75 (hhsearch)
coverage over query:
246-384
 no hit PDB ID: 2qkb chain A
(very confident match)
coverage over query:
243-387
psy6532 277 ID: Q77373 (portable match)
name: Gag-Pol polyprotein
def: Integrase catalyzes viral DNA integration into the host chromosome, by performing a series of DNA cutting and joining reactions. This enzyme activity takes place after virion entry into a cell and reverse transcription of the RNA genome in dsDNA. The first step in the integration process is 3' processing. This step requires a complex comprising the viral genome, matrix protein, Vpr and integrase. This complex is called the pre-integration complex (PIC). The integrase protein removes 2 nucleotides from each 3' end of the viral DNA, leaving recessed CA OH's at the 3' ends. In the second step, the PIC enters cell nucleus. This process is mediated through integrase and Vpr proteins, and allows the virus to infect a non dividing cell. This ability to enter the nucleus is specific of lentiviruses, other retroviruses cannot and rely on cell division to access cell chromosomes. In the third step, termed strand transfer, the integrase protein joins the previously processed 3' ends to the 5' ends of strands of target cellular DNA at the site of integration. The 5'-ends are produced by integrase-catalyzed staggered cuts, 5 bp apart. A Y-shaped, gapped, recombination intermediate results, with the 5'-ends of the viral DNA strands and the 3' ends of target DNA strands remaining unjoined, flanking a gap of 5 bp. The last step is viral DNA integration into host chromosome. This involves host DNA repair synthesis in which the 5 bp gaps between the unjoined strands are filled in and then ligated. Since this process occurs at both cuts flanking the HIV genome, a 5 bp duplication of host DNA is produced at the ends of HIV-1 integration. Alternatively, Integrase may catalyze the excision of viral DNA just after strand transfer, this is termed disintegration.
source: Homo sapiens (taxid: 9606)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.92 (hhsearch)
coverage over query:
103-229
 ID: PF00075
score: 99.90 (hhsearch)
coverage over query:
103-226
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
102-225
psy16967 282 ID: Q77373 (portable match)
name: Gag-Pol polyprotein
def: Integrase catalyzes viral DNA integration into the host chromosome, by performing a series of DNA cutting and joining reactions. This enzyme activity takes place after virion entry into a cell and reverse transcription of the RNA genome in dsDNA. The first step in the integration process is 3' processing. This step requires a complex comprising the viral genome, matrix protein, Vpr and integrase. This complex is called the pre-integration complex (PIC). The integrase protein removes 2 nucleotides from each 3' end of the viral DNA, leaving recessed CA OH's at the 3' ends. In the second step, the PIC enters cell nucleus. This process is mediated through integrase and Vpr proteins, and allows the virus to infect a non dividing cell. This ability to enter the nucleus is specific of lentiviruses, other retroviruses cannot and rely on cell division to access cell chromosomes. In the third step, termed strand transfer, the integrase protein joins the previously processed 3' ends to the 5' ends of strands of target cellular DNA at the site of integration. The 5'-ends are produced by integrase-catalyzed staggered cuts, 5 bp apart. A Y-shaped, gapped, recombination intermediate results, with the 5'-ends of the viral DNA strands and the 3' ends of target DNA strands remaining unjoined, flanking a gap of 5 bp. The last step is viral DNA integration into host chromosome. This involves host DNA repair synthesis in which the 5 bp gaps between the unjoined strands are filled in and then ligated. Since this process occurs at both cuts flanking the HIV genome, a 5 bp duplication of host DNA is produced at the ends of HIV-1 integration. Alternatively, Integrase may catalyze the excision of viral DNA just after strand transfer, this is termed disintegration.
source: Homo sapiens (taxid: 9606)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.89 (hhsearch)
coverage over query:
114-238
 ID: PF00075
score: 99.90 (hhsearch)
coverage over query:
114-238
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
113-237
psy15899 104 ID: Q77373 (portable match)
name: Gag-Pol polyprotein
def: Integrase catalyzes viral DNA integration into the host chromosome, by performing a series of DNA cutting and joining reactions. This enzyme activity takes place after virion entry into a cell and reverse transcription of the RNA genome in dsDNA. The first step in the integration process is 3' processing. This step requires a complex comprising the viral genome, matrix protein, Vpr and integrase. This complex is called the pre-integration complex (PIC). The integrase protein removes 2 nucleotides from each 3' end of the viral DNA, leaving recessed CA OH's at the 3' ends. In the second step, the PIC enters cell nucleus. This process is mediated through integrase and Vpr proteins, and allows the virus to infect a non dividing cell. This ability to enter the nucleus is specific of lentiviruses, other retroviruses cannot and rely on cell division to access cell chromosomes. In the third step, termed strand transfer, the integrase protein joins the previously processed 3' ends to the 5' ends of strands of target cellular DNA at the site of integration. The 5'-ends are produced by integrase-catalyzed staggered cuts, 5 bp apart. A Y-shaped, gapped, recombination intermediate results, with the 5'-ends of the viral DNA strands and the 3' ends of target DNA strands remaining unjoined, flanking a gap of 5 bp. The last step is viral DNA integration into host chromosome. This involves host DNA repair synthesis in which the 5 bp gaps between the unjoined strands are filled in and then ligated. Since this process occurs at both cuts flanking the HIV genome, a 5 bp duplication of host DNA is produced at the ends of HIV-1 integration. Alternatively, Integrase may catalyze the excision of viral DNA just after strand transfer, this is termed disintegration.
source: Homo sapiens (taxid: 9606)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.93 (hhsearch)
coverage over query:
3-98
 ID: PF00075
score: 99.90 (hhsearch)
coverage over query:
3-95
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
2-94
psy16039 586 ID: Q9NBX4 (portable match)
name: Probable RNA-directed DNA polymerase from transposon X-element
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.85 (hhsearch)
coverage over query:
412-538
 ID: PF00075
score: 99.83 (hhsearch)
coverage over query:
411-535
 no hit PDB ID: 3p1g chain A
(very confident match)
coverage over query:
412-540
psy14885 483 ID: Q9VN14 (portable match)
name: Contactin
def: Required for organization of septate junctions and paracellular barrier functions. Septate junctions, which are the equivalent of vertebrates tight junctions, are characterized by regular arrays of transverse structures that span the intermembrane space and form a physical barrier to diffusion.
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.89 (hhsearch)
coverage over query:
221-345
 ID: PF00075
score: 99.83 (hhsearch)
coverage over query:
221-342
 no hit PDB ID: 1j34 chain A
(very confident match)
coverage over query:
28-99,122-182
psy9745 570 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.87 (hhsearch)
coverage over query:
374-506
 ID: PF00075
score: 99.84 (hhsearch)
coverage over query:
374-503
 no hit PDB ID: 3p1g chain A
(very confident match)
coverage over query:
375-507
psy3161 211 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.37 (hhsearch)
coverage over query:
26-101
 ID: PF00075
score: 99.42 (hhsearch)
coverage over query:
26-126
 no hit PDB ID: 2zd1 chain A
(confident match)
coverage over query:
25-127
psy7385 208 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:98.53 (hhsearch)
coverage over query:
11-54
 ID: PF00075
score: 98.72 (hhsearch)
coverage over query:
19-52
 no hit PDB ID: 2qkb chain A
(portable match)
coverage over query:
12-54
psy8412 271 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.91 (hhsearch)
coverage over query:
12-139
 ID: PF00075
score: 99.91 (hhsearch)
coverage over query:
12-137
 no hit PDB ID: 3p1g chain A
(very confident match)
coverage over query:
13-139
psy556 435 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:98.92 (hhsearch)
coverage over query:
253-305
 ID: PF00075
score: 99.25 (hhsearch)
coverage over query:
242-302
 no hit PDB ID: 2qkb chain A
(confident match)
coverage over query:
243-305
psy13868 128 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.46 (hhsearch)
coverage over query:
32-109
 ID: PF00075
score: 99.48 (hhsearch)
coverage over query:
32-110
 no hit PDB ID: 2zd1 chain A
(confident match)
coverage over query:
31-124
psy7630 160 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.71 (hhsearch)
coverage over query:
42-155
 ID: PF00075
score: 99.73 (hhsearch)
coverage over query:
42-155
 no hit PDB ID: 2zd1 chain A
(confident match)
coverage over query:
42-154
psy7230 306 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.89 (hhsearch)
coverage over query:
68-195
 ID: PF00075
score: 99.89 (hhsearch)
coverage over query:
68-192
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
65-191
psy16693 196 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.47 (hhsearch)
coverage over query:
12-97
 ID: PF00075
score: 99.61 (hhsearch)
coverage over query:
13-95
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
12-93
psy16114 202 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:98.44 (hhsearch)
coverage over query:
26-68
 ID: PF00075
score: 99.05 (hhsearch)
coverage over query:
7-66
 no hit PDB ID: 3qio chain A
(confident match)
coverage over query:
6-68
psy5385 180 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:96.60 (hhsearch)
coverage over query:
17-47
 ID: PF00075
score: 97.97 (hhsearch)
coverage over query:
20-47
 no hit PDB ID: 2qkb chain A
(portable match)
coverage over query:
22-48
psy8376 328 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.89 (hhsearch)
coverage over query:
57-189
 ID: PF00075
score: 99.89 (hhsearch)
coverage over query:
57-186
 no hit PDB ID: 3p1g chain A
(very confident match)
coverage over query:
57-189
psy13365 231 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:97.96 (hhsearch)
coverage over query:
44-68
 ID: PF00075
score: 98.58 (hhsearch)
coverage over query:
22-68
 no hit PDB ID: 2zd1 chain A
(portable match)
coverage over query:
22-68
psy4967 354 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.88 (hhsearch)
coverage over query:
141-271
 ID: PF00075
score: 99.88 (hhsearch)
coverage over query:
141-270
 no hit PDB ID: 1mu2 chain A
(very confident match)
coverage over query:
140-269
psy16958 257 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:92.93 (hhsearch)
coverage over query:
95-148
 ID: PF00075
score: 97.65 (hhsearch)
coverage over query:
95-146
 no hit PDB ID: 2zd1 chain A
(portable match)
coverage over query:
94-161
psy16896 423 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.92 (hhsearch)
coverage over query:
56-225
 ID: PF00075
score: 99.87 (hhsearch)
coverage over query:
56-222
 no hit PDB ID: 3p1g chain A
(very confident match)
coverage over query:
56-137,173-226
psy7535 199 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.57 (hhsearch)
coverage over query:
13-121
 ID: PF00075
score: 99.69 (hhsearch)
coverage over query:
13-121
 no hit PDB ID: 1mu2 chain A
(confident match)
coverage over query:
12-121
psy2213 194 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.31 (hhsearch)
coverage over query:
4-76
 ID: PF00075
score: 99.52 (hhsearch)
coverage over query:
6-74
 no hit PDB ID: 3p1g chain A
(confident match)
coverage over query:
6-77
psy10247 315 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.90 (hhsearch)
coverage over query:
45-178
 ID: PF00075
score: 99.90 (hhsearch)
coverage over query:
45-176
 no hit PDB ID: 2zd1 chain A
(confident match)
coverage over query:
44-96,107-174
psy12035 251 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.06 (hhsearch)
coverage over query:
9-113
 ID: PF00075
score: 99.01 (hhsearch)
coverage over query:
26-110
 no hit PDB ID: 1jl1 chain A
(confident match)
coverage over query:
27-114
psy6829 369 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.88 (hhsearch)
coverage over query:
159-286
 ID: PF00075
score: 99.86 (hhsearch)
coverage over query:
160-283
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
161-282
psy14646 366 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.69 (hhsearch)
coverage over query:
40-206
 ID: PF00075
score: 99.77 (hhsearch)
coverage over query:
38-203
 no hit PDB ID: 2zd1 chain A
(confident match)
coverage over query:
39-90,133-202
psy8736 290 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:97.43 (hhsearch)
coverage over query:
135-264
 ID: PF00075
score: 98.40 (hhsearch)
coverage over query:
134-264
 no hit PDB ID: 2zd1 chain A
(portable match)
coverage over query:
134-264
psy15839 293 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.90 (hhsearch)
coverage over query:
57-183
 ID: PF00075
score: 99.89 (hhsearch)
coverage over query:
57-180
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
57-179
psy16807 220 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:98.29 (hhsearch)
coverage over query:
35-64
 ID: PF00075
score: 98.66 (hhsearch)
coverage over query:
32-61
 no hit PDB ID: 2zd1 chain A
(portable match)
coverage over query:
31-60
psy7520 402 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.83 (hhsearch)
coverage over query:
136-263
 ID: PF00075
score: 99.87 (hhsearch)
coverage over query:
135-260
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
134-259
psy5071 366 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.86 (hhsearch)
coverage over query:
104-231
 ID: PF00075
score: 99.87 (hhsearch)
coverage over query:
104-228
 no hit PDB ID: 3p1g chain A
(very confident match)
coverage over query:
105-231
psy5156 389 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.90 (hhsearch)
coverage over query:
16-214
 ID: PF00075
score: 99.85 (hhsearch)
coverage over query:
16-211
 no hit PDB ID: 3p1g chain A
(very confident match)
coverage over query:
17-103,140-159,181-215
psy4359 220 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.16 (hhsearch)
coverage over query:
15-95
 ID: PF00075
score: 99.23 (hhsearch)
coverage over query:
15-95
 no hit PDB ID: 1ril chain A
(confident match)
coverage over query:
15-95,107-117
psy5610 237 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.72 (hhsearch)
coverage over query:
1-97
 ID: PF00075
score: 99.71 (hhsearch)
coverage over query:
2-96
 no hit PDB ID: 2zd1 chain A
(confident match)
coverage over query:
1-94
psy9737 368 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:98.16 (hhsearch)
coverage over query:
160-203
 ID: PF00075
score: 98.94 (hhsearch)
coverage over query:
136-200
 no hit PDB ID: 2kq2 chain A
(confident match)
coverage over query:
137-205
psy17175 285 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:95.64 (hhsearch)
coverage over query:
114-142
 ID: PF00075
score: 97.11 (hhsearch)
coverage over query:
117-142
 no hit PDB ID: 2zd1 chain A
(portable match)
coverage over query:
119-143
psy2212 267 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.84 (hhsearch)
coverage over query:
2-115
 ID: PF00075
score: 99.81 (hhsearch)
coverage over query:
3-113
 no hit PDB ID: 3p1g chain A
(very confident match)
coverage over query:
3-115
psy529 338 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.41 (hhsearch)
coverage over query:
67-196
 ID: PF00075
score: 99.31 (hhsearch)
coverage over query:
85-193
 no hit PDB ID: 2zd1 chain A
(confident match)
coverage over query:
92-192
psy17738 316 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.81 (hhsearch)
coverage over query:
200-315
 ID: PF00075
score: 99.76 (hhsearch)
coverage over query:
199-315
 no hit PDB ID: 2zd1 chain A
(confident match)
coverage over query:
198-315
psy6025 89 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:98.73 (hhsearch)
coverage over query:
6-55
 ID: PF00075
score: 99.14 (hhsearch)
coverage over query:
10-52
 no hit PDB ID: 3p1g chain A
(confident match)
coverage over query:
9-57
psy2786 198 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:98.79 (hhsearch)
coverage over query:
3-76
 ID: PF00075
score: 99.29 (hhsearch)
coverage over query:
2-74
 no hit PDB ID: 2qkb chain A
(confident match)
coverage over query:
3-76
psy10817 199 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:98.57 (hhsearch)
coverage over query:
19-58
 ID: PF00075
score: 98.93 (hhsearch)
coverage over query:
15-58
 no hit PDB ID: 2qkb chain A
(portable match)
coverage over query:
21-58
psy11598 457 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.23 (hhsearch)
coverage over query:
260-362
 ID: PF00075
score: 99.47 (hhsearch)
coverage over query:
260-362
 no hit PDB ID: 2zd1 chain A
(confident match)
coverage over query:
259-363
psy11794 325 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.92 (hhsearch)
coverage over query:
72-202
 ID: PF00075
score: 99.89 (hhsearch)
coverage over query:
73-198
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
73-197
psy5480 446 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.85 (hhsearch)
coverage over query:
150-274
 ID: PF00075
score: 99.87 (hhsearch)
coverage over query:
150-274
 no hit PDB ID: 3p1g chain A
(very confident match)
coverage over query:
151-274
psy10399 442 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:97.59 (hhsearch)
coverage over query:
275-307
 ID: PF00075
score: 98.20 (hhsearch)
coverage over query:
276-306
 no hit PDB ID: 2zd1 chain A
(portable match)
coverage over query:
277-305
psy1195 223 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.80 (hhsearch)
coverage over query:
18-173
 ID: PF00075
score: 99.58 (hhsearch)
coverage over query:
20-171
 no hit no hit
psy15595 221 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.28 (hhsearch)
coverage over query:
96-204
 ID: PF00075
score: 99.56 (hhsearch)
coverage over query:
96-211
 no hit PDB ID: 2zd1 chain A
(confident match)
coverage over query:
95-205
psy3428 682 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.88 (hhsearch)
coverage over query:
327-454
 ID: PF00075
score: 99.82 (hhsearch)
coverage over query:
327-451
 no hit no hit
psy3058 244 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.77 (hhsearch)
coverage over query:
9-104
 ID: PF00075
score: 99.79 (hhsearch)
coverage over query:
4-102
 no hit PDB ID: 3p1g chain A
(confident match)
coverage over query:
5-107
psy17038 399 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.07 (hhsearch)
coverage over query:
3-73
 ID: PF00075
score: 99.18 (hhsearch)
coverage over query:
4-71
 no hit PDB ID: 3qio chain A
(confident match)
coverage over query:
3-72
psy10246 287 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.85 (hhsearch)
coverage over query:
141-258
 ID: PF00075
score: 99.75 (hhsearch)
coverage over query:
141-256
 no hit PDB ID: 2kq2 chain A
(confident match)
coverage over query:
140-261
psy663 275 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:98.73 (hhsearch)
coverage over query:
178-252
 ID: PF00075
score: 99.11 (hhsearch)
coverage over query:
178-267
 no hit PDB ID: 3hst chain B
(confident match)
coverage over query:
179-271
psy10264 426 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.84 (hhsearch)
coverage over query:
186-339
 ID: PF00075
score: 99.85 (hhsearch)
coverage over query:
185-336
 no hit PDB ID: 3p1g chain A
(very confident match)
coverage over query:
185-241,269-338
psy12122 412 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:98.04 (hhsearch)
coverage over query:
24-73
 ID: PF00075
score: 98.22 (hhsearch)
coverage over query:
39-70
 no hit PDB ID: 2zd1 chain A
(portable match)
coverage over query:
12-69
psy12036 236 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:97.94 (hhsearch)
coverage over query:
57-97
 ID: PF00075
score: 98.26 (hhsearch)
coverage over query:
65-95
 no hit PDB ID: 1jl1 chain A
(confident match)
coverage over query:
67-99
psy7660 250 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.82 (hhsearch)
coverage over query:
2-120
 ID: PF00075
score: 99.83 (hhsearch)
coverage over query:
8-117
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
8-116
psy18013 563 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.77 (hhsearch)
coverage over query:
178-301
 ID: PF00075
score: 99.81 (hhsearch)
coverage over query:
178-301
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
177-301
psy15277 269 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.91 (hhsearch)
coverage over query:
7-134
 ID: PF00075
score: 99.90 (hhsearch)
coverage over query:
7-131
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
4-130
psy8162 326 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.93 (hhsearch)
coverage over query:
104-272
 ID: PF00075
score: 99.88 (hhsearch)
coverage over query:
104-269
 no hit PDB ID: 3p1g chain A
(very confident match)
coverage over query:
105-187,216-273
psy11389 73 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:98.37 (hhsearch)
coverage over query:
10-38
 ID: PF00075
score: 98.89 (hhsearch)
coverage over query:
6-36
 no hit PDB ID: 2zd1 chain A
(portable match)
coverage over query:
7-36
psy1455 221 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:97.63 (hhsearch)
coverage over query:
69-96
 ID: PF00075
score: 98.30 (hhsearch)
coverage over query:
65-95
 no hit PDB ID: 2zd1 chain A
(portable match)
coverage over query:
67-94
psy7629 468 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.96 (hhsearch)
coverage over query:
311-453
 ID: PF00075
score: 99.84 (hhsearch)
coverage over query:
310-451
 no hit PDB ID: 1mu2 chain A
(confident match)
coverage over query:
310-392,409-450
psy4044 460 ID: P03363 (portable match)
name: Gag-Pro-Pol polyprotein
def: Integrase catalyzes viral DNA integration into the host chromosome, by performing a series of DNA cutting and joining reactions. This enzyme activity takes place after virion entry into a cell and reverse transcription of the RNA genome in dsDNA. The first step in the integration process is 3' processing. This step requires a complex comprising the viral genome, matrix protein, and integrase. This complex is called the pre-integration complex (PIC). The integrase protein removes 2 nucleotides from each 3' end of the viral DNA, leaving recessed dinucleotides OH's at the 3' ends. In the second step, the PIC access cell chromosomes during cell division. The third step, termed strand transfer, the integrase protein joins the previously processed 3' ends to the 5'-ends of strands of target cellular DNA at the site of integration. The 5'-ends are produced by integrase-catalyzed staggered cuts, 5 bp apart. A Y-shaped, gapped, recombination intermediate results, with the 5'-ends of the viral DNA strands and the 3' ends of target DNA strands remaining unjoined, flanking a gap of 5 bp. The last step is viral DNA integration into host chromosome. This involves host DNA repair synthesis in which the 5 bp gaps between the unjoined strands (see above) are filled in and then ligated.
source: Homo sapiens (taxid: 9606)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:98.82 (hhsearch)
coverage over query:
276-396
 ID: PF00078
score: 99.75 (hhsearch)
coverage over query:
72-231
 no hit PDB ID: 1rw3 chain A
(very confident match)
coverage over query:
60-370
psy10810 786 ID: P03371 (portable match)
name: Pol polyprotein
def: During replicative cycle of retroviruses, the reverse-transcribed viral DNA is integrated into the host chromosome by the viral integrase enzyme. RNase H activity is associated with the reverse transcriptase.
source: Equus caballus (taxid: 9796)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.86 (hhsearch)
coverage over query:
515-640
 ID: PF00078
score: 99.80 (hhsearch)
coverage over query:
12-283
 no hit PDB ID: 2zd1 chain A
(very confident match)
coverage over query:
513-636
psy5607 769 ID: P16423 (portable match)
name: Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.22 (hhsearch)
coverage over query:
642-714
 ID: PF00078
score: 99.95 (hhsearch)
coverage over query:
170-423
 no hit PDB ID: 2zd1 chain A
(confident match)
coverage over query:
246-265,278-388
psy3306 535 ID: P16425 (portable match)
name: Putative 115 kDa protein in type-1 retrotransposable element R1DM
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:98.66 (hhsearch)
coverage over query:
367-436
 ID: PF00078
score: 99.65 (hhsearch)
coverage over query:
2-157
 no hit PDB ID: 3kyl chain A
(confident match)
coverage over query:
2-121
psy15121 960 ID: P20825 (portable match)
name: Retrovirus-related Pol polyprotein from transposon 297
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:98.31 (hhsearch)
coverage over query:
807-928
 ID: PF00078
score: 99.49 (hhsearch)
coverage over query:
309-465
 no hit PDB ID: 3fsi chain A
(very confident match)
coverage over query:
604-765
psy14859 1097 ID: P27502 (portable match)
name: Polyprotein P3
def: Capsid protein self assembles to form a bacilliform capsid about 130 nm in length. The capsid encapsulates the genomic dsDNA. Following virus entry into host cell, provides nuclear import of the viral genome. Virus particles do not enter the nucleus, but are targeted to the nuclear membrane through the interaction with host importins.
source: Oryza sativa (taxid: 4530)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:98.20 (hhsearch)
coverage over query:
770-890
 ID: PF00078
score: 99.62 (hhsearch)
coverage over query:
505-668
 no hit PDB ID: 1rw3 chain A
(very confident match)
coverage over query:
424-870
psy12088 289 ID: P62142 (portable match)
name: Serine/threonine-protein phosphatase PP1-beta catalytic subunit
def: Protein phosphatase (PP1) is essential for cell division, it participates in the regulation of glycogen metabolism, muscle contractility and protein synthesis. Involved in regulation of ionic conductances and long-term synaptic plasticity. Component of the PTW/PP1 phosphatase complex, which plays a role in the control of chromatin structure and cell cycle progression during the transition from mitosis into interphase.
source: Rattus norvegicus (taxid: 10116)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:93.80 (hhsearch)
coverage over query:
151-190
 ID: PF00149
score: 97.71 (hhsearch)
coverage over query:
94-138
 ID: GO:0031981 (confident match)
name: nuclear lumen
 PDB ID: 3ll8 chain A
(very confident match)
coverage over query:
7-43,57-139,152-237
psy6927 93 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:93.28 (hhsearch)
coverage over query:
1-74
 ID: PF00336
score: 97.20 (hhsearch)
coverage over query:
18-84
 no hit PDB ID: 2ehg chain A
(confident match)
coverage over query:
16-80
psy2243 405 ID: Q5RDD3 (portable match)
name: Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial
def: Accepts electrons from ETF and reduces ubiquinone.
source: Pongo abelii (taxid: 9601)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:99.84 (hhsearch)
coverage over query:
146-272
 ID: PF05187
score: 100.00 (hhsearch)
coverage over query:
281-378
 no hit PDB ID: 2gmh chain A
(very confident match)
coverage over query:
230-271,282-379
psy15012 1085 ID: Q2LD37 (portable match)
name: Uncharacterized protein KIAA1109
def:
source: Homo sapiens (taxid: 9606)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:97.36 (hhsearch)
coverage over query:
558-679
 ID: PF05380
score: 100.00 (hhsearch)
coverage over query:
476-636
 no hit PDB ID: 2qkb chain A
(confident match)
coverage over query:
557-686
psy17737 493 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:97.67 (hhsearch)
coverage over query:
131-260
 ID: PF05380
score: 100.00 (hhsearch)
coverage over query:
50-209
 no hit PDB ID: 2qkb chain A
(confident match)
coverage over query:
130-259
psy5357 181 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:97.79 (hhsearch)
coverage over query:
31-143
 ID: PF05380
score: 99.96 (hhsearch)
coverage over query:
2-91
 no hit PDB ID: 2zd1 chain A
(portable match)
coverage over query:
31-149
psy11442 1362 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:93.06 (hhsearch)
coverage over query:
298-378
 ID: PF05380
score: 100.00 (hhsearch)
coverage over query:
157-334
 no hit PDB ID: 3oym chain A
(portable match)
coverage over query:
509-542,553-735
psy15380 1738 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:95.49 (hhsearch)
coverage over query:
1623-1722
 ID: PF05380
score: 100.00 (hhsearch)
coverage over query:
1558-1704
 no hit PDB ID: 2zd1 chain A
(confident match)
coverage over query:
1129-1457,1469-1491,1508-1509
,1523-1684,1697-1717
psy13892 628 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:97.78 (hhsearch)
coverage over query:
257-387
 ID: PF05380
score: 99.98 (hhsearch)
coverage over query:
172-336
 no hit PDB ID: 2zd1 chain A
(confident match)
coverage over query:
2-126,145-242,255-322
psy9877 1447 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:97.59 (hhsearch)
coverage over query:
937-1071
 ID: PF05380
score: 100.00 (hhsearch)
coverage over query:
854-1020
 no hit PDB ID: 2zd1 chain A
(confident match)
coverage over query:
588-698,713-761,774-923
,934-1029
psy3199 1144 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:98.44 (hhsearch)
coverage over query:
868-988
 ID: PF05869
score: 99.12 (hhsearch)
coverage over query:
989-1116
 no hit PDB ID: 2zd1 chain A
(confident match)
coverage over query:
685-923
psy10407 210 ID: P04323 (portable match)
name: Retrovirus-related Pol polyprotein from transposon 17.6
def:
source: Drosophila melanogaster (taxid: 7227)
 ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:96.66 (hhsearch)
coverage over query:
39-149
 ID: PF13456
score: 97.51 (hhsearch)
coverage over query:
73-149
 no hit PDB ID: 2zd1 chain A
(confident match)
coverage over query:
8-105
psy8593 204 no hit ID: COG0328
name: RnhA Ribonuclease HI [DNA replication, recombination, and repair]
score:90.94 (hhsearch)
coverage over query:
74-162
 ID: PF13456
score: 97.65 (hhsearch)
coverage over query:
77-160
 no hit PDB ID: 1rw3 chain A
(confident match)
coverage over query:
7-139
psy11975 786 ID: B1I383 (portable match)
name: 4-hydroxy-tetrahydrodipicolinate synthase
def:
source: Desulforudis audaxviator (strain MP104C) (taxid: 477974)
 ID: COG0329
name: DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
score:100.00 (hhsearch)
coverage over query:
456-740
 ID: PF00701
score: 100.00 (hhsearch)
coverage over query:
456-740
 no hit PDB ID: 2yxg chain A
(very confident match)
coverage over query:
456-484,510-742
psy9711 198 ID: B4SE03 (confident match)
name: 4-hydroxy-tetrahydrodipicolinate synthase
def:
source: Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) (taxid: 324925)
 ID: COG0329
name: DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
score:100.00 (hhsearch)
coverage over query:
2-197
 ID: PF00701
score: 100.00 (hhsearch)
coverage over query:
2-197
 no hit PDB ID: 2pcq chain A
(very confident match)
coverage over query:
2-197
psy9602 239 ID: B5FIR8 (portable match)
name: N-acetylneuraminate lyase
def: Catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetylmannosamine via a Schiff base intermediate.
source: Salmonella dublin (strain CT_02021853) (taxid: 439851)
 ID: COG0329
name: DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
score:100.00 (hhsearch)
coverage over query:
84-239
 ID: PF00701
score: 99.97 (hhsearch)
coverage over query:
87-239
 no hit PDB ID: 2wkj chain A
(very confident match)
coverage over query:
84-104,125-239
psy16696 296 ID: O60121 (confident match)
name: Uncharacterized protein C16G5.07c
def:
source: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
 ID: COG0330
name: HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
score:100.00 (hhsearch)
coverage over query:
74-259
 ID: PF01145
score: 99.97 (hhsearch)
coverage over query:
73-240
 ID: GO:0005758 (confident match)
name: mitochondrial intermembrane space
 PDB ID: 3bk6 chain A
(very confident match)
coverage over query:
98-250
Browse the full list     
  

A simple query using a name or keyword can be done using the search box below. For protein ID search, please use name format like 'psy12345'. For GO term search, please use name format like 'GO:0005737'. For COG search, please use name format like 'COG3063'. For Pfam search, please use name format like 'PF06418'. You can also input keywords like 'SUI1 Translation initiation factor 1'