| Protein ID Link to complete analysis report |
Lenth Link to complete analysis report |
Similarity with COG COG1107 |
All predicted COG clusters |
|---|---|---|---|
| psy14505 | 1619 | hhsearch probability: 96.55 Identity: 21% subject length: 715 Length of aligned reigon: 150 Coverage over query: 1336-1499 Coverage over subject: 117-283 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG0283, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG0188, GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair] COG1102, Cmk Cytidylate kinase [Nucleotide transport and metabolism] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1936, Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG3265, GntK Gluconate kinase [Carbohydrate transport and metabolism] COG0703, AroK Shikimate kinase [Amino acid transport and metabolism] COG0237, CoaE Dephospho-CoA kinase [Coenzyme metabolism] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG0572, Udk Uridine kinase [Nucleotide transport and metabolism] COG0529, CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG0563, Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] COG1660, Predicted P-loop-containing kinase [General function prediction only] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG2019, AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] COG0557, VacB Exoribonuclease R [Transcription] COG2074, 2-phosphoglycerate kinase [Carbohydrate transport and metabolism] |
| psy9769 | 1026 | hhsearch probability: 93.19 Identity: 17% subject length: 715 Length of aligned reigon: 144 Coverage over query: 870-1021 Coverage over subject: 118-285 |
COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG3055, Uncharacterized protein conserved in bacteria [Function unknown] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG2183, Tex Transcriptional accessory protein [Transcription] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG5201, SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] |
| psy2573 | 1281 | hhsearch probability: 95.73 Identity: 18% subject length: 715 Length of aligned reigon: 74 Coverage over query: 1186-1263 Coverage over subject: 117-190 |
COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG0689, Rph RNase PH [Translation, ribosomal structure and biogenesis] COG2123, RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG0557, VacB Exoribonuclease R [Transcription] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] |
| psy11418 | 553 | hhsearch probability: 90.10 Identity: 23% subject length: 715 Length of aligned reigon: 78 Coverage over query: 88-173 Coverage over subject: 211-288 |
COG0173, AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG1190, LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] COG0017, AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] COG0124, HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG0016, PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] COG0442, ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG3705, HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] COG0172, SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG0441, ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG0423, GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] COG3111, Periplasmic protein with OB-fold [Function unknown] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] |
| psy9755 | 727 | hhsearch probability: 90.92 Identity: 7% subject length: 715 Length of aligned reigon: 74 Coverage over query: 57-131 Coverage over subject: 200-282 |
COG1409, Icc Predicted phosphohydrolases [General function prediction only] COG1311, HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair] COG0420, SbcD DNA repair exonuclease [DNA replication, recombination, and repair] COG2908, Uncharacterized protein conserved in bacteria [Function unknown] COG1408, Predicted phosphohydrolases [General function prediction only] COG0622, Predicted phosphoesterase [General function prediction only] COG4186, Predicted phosphoesterase or phosphohydrolase [General function prediction only] COG2129, Predicted phosphoesterases, related to the Icc protein [General function prediction only] COG1407, Predicted ICC-like phosphoesterases [General function prediction only] COG5555, Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion] COG1768, Predicted phosphohydrolase [General function prediction only] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] |
| psy2902 | 945 | hhsearch probability: 97.06 Identity: 36% subject length: 715 Length of aligned reigon: 58 Coverage over query: 702-767 Coverage over subject: 5-80 |
COG0443, DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] COG1077, MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] COG0484, DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] COG0849, ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] COG4820, EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] COG1070, XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] COG4972, PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] COG5277, Actin and related proteins [Cytoskeleton] COG1069, AraB Ribulose kinase [Energy production and conversion] COG1924, Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] COG0554, GlpK Glycerol kinase [Energy production and conversion] COG4457, SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG2214, CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] COG0248, GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] COG4819, EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] COG3426, Butyrate kinase [Energy production and conversion] |
| psy8087 | 658 | hhsearch probability: 95.15 Identity: 20% subject length: 715 Length of aligned reigon: 87 Coverage over query: 502-596 Coverage over subject: 203-289 |
COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] COG0173, AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG0017, AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] COG1190, LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] COG0016, PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] COG2502, AsnA Asparagine synthetase A [Amino acid transport and metabolism] COG0124, HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG4085, Predicted RNA-binding protein, contains TRAM domain [General function prediction only] COG0172, SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG3111, Periplasmic protein with OB-fold [Function unknown] |
| psy3754 | 755 | hhsearch probability: 97.38 Identity: 26% subject length: 715 Length of aligned reigon: 68 Coverage over query: 680-753 Coverage over subject: 117-185 |
COG0689, Rph RNase PH [Translation, ribosomal structure and biogenesis] COG2123, RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG0184, RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1094, Predicted RNA-binding protein (contains KH domains) [General function prediction only] COG1530, CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis] |
| psy10927 | 858 | hhsearch probability: 95.54 Identity: 33% subject length: 715 Length of aligned reigon: 45 Coverage over query: 593-649 Coverage over subject: 18-81 |
COG0484, DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] COG2214, CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] COG5407, SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] COG5269, ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] |
| psy3762 | 595 | hhsearch probability: 96.44 Identity: 19% subject length: 715 Length of aligned reigon: 86 Coverage over query: 5-103 Coverage over subject: 204-289 |
COG0173, AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] COG0017, AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] COG1190, LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] COG0016, PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] COG0124, HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG2502, AsnA Asparagine synthetase A [Amino acid transport and metabolism] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG0442, ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG3705, HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] COG0172, SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG4085, Predicted RNA-binding protein, contains TRAM domain [General function prediction only] COG3111, Periplasmic protein with OB-fold [Function unknown] COG0441, ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG5235, RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair] COG0423, GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] |
| psy3763 | 595 | hhsearch probability: 96.44 Identity: 19% subject length: 715 Length of aligned reigon: 86 Coverage over query: 5-103 Coverage over subject: 204-289 |
COG0173, AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] COG0017, AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] COG1190, LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] COG0016, PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] COG0124, HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG2502, AsnA Asparagine synthetase A [Amino acid transport and metabolism] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG0442, ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG3705, HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] COG0172, SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG4085, Predicted RNA-binding protein, contains TRAM domain [General function prediction only] COG3111, Periplasmic protein with OB-fold [Function unknown] COG0441, ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG5235, RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair] COG0423, GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] |
| psy11884 | 644 | hhsearch probability: 95.85 Identity: 29% subject length: 715 Length of aligned reigon: 58 Coverage over query: 405-469 Coverage over subject: 18-106 |
COG2214, CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] COG0484, DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] COG5407, SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] COG5269, ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1076, DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] |
| psy13107 | 170 | hhsearch probability: 95.04 Identity: 23% subject length: 715 Length of aligned reigon: 61 Coverage over query: 79-157 Coverage over subject: 120-181 |
COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG4776, Rnb Exoribonuclease II [Transcription] |
| psy11042 | 235 | hhsearch probability: 96.34 Identity: 13% subject length: 715 Length of aligned reigon: 78 Coverage over query: 52-149 Coverage over subject: 108-189 |
COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG3063, PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] |
| psy4972 | 349 | hhsearch probability: 97.15 Identity: 26% subject length: 715 Length of aligned reigon: 73 Coverage over query: 141-214 Coverage over subject: 3-83 |
COG2214, CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] COG0484, DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] COG5407, SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] COG5269, ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1076, DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] |
| psy11410 | 532 | hhsearch probability: 97.66 Identity: 28% subject length: 715 Length of aligned reigon: 72 Coverage over query: 458-529 Coverage over subject: 115-187 |
COG2183, Tex Transcriptional accessory protein [Transcription] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG1555, ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG0557, VacB Exoribonuclease R [Transcription] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG4277, Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] COG1031, Uncharacterized Fe-S oxidoreductase [Energy production and conversion] |
| psy16387 | 676 | hhsearch probability: 96.19 Identity: 28% subject length: 715 Length of aligned reigon: 57 Coverage over query: 81-144 Coverage over subject: 18-105 |
COG0484, DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] |
| psy18072 | 174 | hhsearch probability: 98.81 Identity: 25% subject length: 715 Length of aligned reigon: 110 Coverage over query: 14-131 Coverage over subject: 121-243 |
COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only] COG1093, SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis] COG1098, VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis] COG0539, RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis] COG1096, Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis] COG1185, Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] COG2183, Tex Transcriptional accessory protein [Transcription] COG1097, RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1095, RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] COG0557, VacB Exoribonuclease R [Transcription] COG1530, CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis] |
| psy3603 | 264 | hhsearch probability: 95.67 Identity: 25% subject length: 715 Length of aligned reigon: 81 Coverage over query: 28-116 Coverage over subject: 198-284 |
COG4085, Predicted RNA-binding protein, contains TRAM domain [General function prediction only] COG3481, Predicted HD-superfamily hydrolase [General function prediction only] COG5235, RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] COG1200, RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] COG1599, RFA1 Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins [DNA replication, recombination, and repair] COG1570, XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] |
| psy13182 | 194 | hhsearch probability: 94.97 Identity: 14% subject length: 715 Length of aligned reigon: 77 Coverage over query: 64-146 Coverage over subject: 200-276 |
COG0017, AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] COG0173, AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] COG1190, LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] |