| GOID Link to GO |
Functional Category | Description | Protein Count link to protein list |
|---|---|---|---|
| GO:0003729 | mRNA binding | Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. | 108 |
| GO:0008266 | poly(U) RNA binding | Interacting selectively and non-covalently with a sequence of uracil residues in an RNA molecule. | 36 |
| GO:0003727 | single-stranded RNA binding | Interacting selectively and non-covalently with single-stranded RNA. | 33 |
| GO:0019843 | rRNA binding | Interacting selectively and non-covalently with ribosomal RNA. | 25 |
| GO:0000049 | tRNA binding | Interacting selectively and non-covalently with transfer RNA. | 24 |
| GO:0017091 | AU-rich element binding | Interacting selectively and non-covalently with a region of RNA containing frequent adenine and uridine bases. | 15 |
| GO:0035198 | miRNA binding | Interacting selectively and non-covalently with a microRNA, a 21-23 nucleotide RNA that is processed from a stem-loop RNA precursor (pre-miRNA) that is encoded within plant and animal genomes. | 13 |
| GO:0003725 | double-stranded RNA binding | Interacting selectively and non-covalently with double-stranded RNA. | 11 |
| GO:0033592 | RNA strand annealing activity | Facilitates the base-pairing of complementary single-stranded RNA. | 11 |
| GO:0036002 | pre-mRNA binding | Interacting selectively and non-covalently with pre-messenger RNA (pre-mRNA), an intermediate molecule between DNA and protein that may contain introns and, at least in part, encodes one or more proteins. Introns are removed from pre-mRNA to form a mRNA molecule. | 8 |
| GO:0017069 | snRNA binding | Interacting selectively and non-covalently with a small nuclear RNA (snRNA). | 7 |
| GO:0017070 | U6 snRNA binding | Interacting selectively and non-covalently with the U6 small nuclear RNA (U6 snRNA). | 7 |
| GO:0030628 | pre-mRNA 3'-splice site binding | Interacting selectively and non-covalently with the pre-mRNA 3' splice site sequence. | 7 |
| GO:0008135 | translation factor activity, nucleic acid binding | Functions during translation by interacting selectively and non-covalently with nucleic acids during polypeptide synthesis at the ribosome. | 7 |
| GO:0042835 | BRE binding | Interacting selectively and non-covalently with the RNA element BRE (Bruno response element). | 6 |
| GO:0008312 | 7S RNA binding | Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP). | 6 |
| GO:0000340 | RNA 7-methylguanosine cap binding | Interacting selectively and non-covalently with the 7-methylguanosine group added cotranscriptionally to the 5' end of RNA molecules transcribed by polymerase II. | 6 |
| GO:0097157 | pre-mRNA intronic binding | Interacting selectively and non-covalently with an intronic sequence of a pre-messenger RNA (pre-mRNA). | 6 |
| GO:0000339 | RNA cap binding | Interacting selectively and non-covalently with a 7-methylguanosine (m7G) group or derivative located at the 5' end of an RNA molecule. | 5 |
| GO:0030621 | U4 snRNA binding | Interacting selectively and non-covalently with the U4 small nuclear RNA (U4 snRNA). | 5 |
| GO:0035613 | RNA stem-loop binding | Interacting selectively and non-covalently with a stem-loop in an RNA molecule. An RNA stem-loop is a secondary RNA structure consisting of a double-stranded RNA (dsRNA) stem and a terminal loop. | 4 |
| GO:0035197 | siRNA binding | Interacting selectively and non-covalently with a small interfering RNA, a 21-23 nucleotide RNA that is processed from double stranded RNA (dsRNA) by an RNAse enzyme. | 4 |
| GO:0017131 | uridine-rich cytoplasmic polyadenylylation element binding | Interacting selectively and non-covalently with U-rich sequence in the 3'-end of nuclear-transcribed mRNAs; required for cytoplasmic polyadenylylation. | 4 |
| GO:0008187 | poly-pyrimidine tract binding | Interacting selectively and non-covalently with any stretch of pyrimidines (cytosine or uracil) in an RNA molecule. | 4 |
| GO:0030515 | snoRNA binding | Interacting selectively and non-covalently with small nucleolar RNA. | 4 |
| GO:0071208 | histone pre-mRNA DCP binding | Interacting selectively and non-covalently with the downstream cleavage product (DCP) generated by histone pre-mRNA 3'-end processing. | 3 |
| GO:0034046 | poly(G) RNA binding | Interacting selectively and non-covalently with a sequence of guanine residues in an RNA molecule. | 3 |
| GO:0017130 | poly(C) RNA binding | Interacting selectively and non-covalently with a sequence of cytosine residues in an RNA molecule. | 3 |
| GO:0034336 | misfolded RNA binding | Interacting selectively and non-covalently with an RNA molecule that has assumed an incorrect conformation. | 3 |
| GO:0034511 | U3 snoRNA binding | Interacting selectively and non-covalently with U3 small nucleolar RNA. | 3 |
| GO:0034584 | piRNA binding | Interacting selectively and non-covalently with a piRNA, a Piwi-associated RNA, a 24- to 30-nucleotide RNA derived from repeat or complex DNA sequence elements and processed by a Dicer-independent mechanism. | 3 |
| GO:0030620 | U2 snRNA binding | Interacting selectively and non-covalently with the U2 small nuclear RNA (U2 snRNA). | 2 |
| GO:0030629 | U6 snRNA 3'-end binding | Interacting selectively and non-covalently with the 3' end of the U6 small nuclear RNA (U6 snRNA). | 2 |
| GO:0002151 | G-quadruplex RNA binding | Interacting selectively and non-covalently with G-quadruplex RNA structures, in which groups of four guanines adopt a flat, cyclic hydrogen-bonding arrangement known as a guanine tetrad. | 2 |
| GO:0070883 | pre-miRNA binding | Interacting selectively and non-covalently with a precursor microRNA (pre-miRNA) transcript, a stem-loop-containing precursor of microRNA. | 2 |
| GO:0035614 | snRNA stem-loop binding | Interacting selectively and non-covalently with a stem-loop in a small nuclear RNA (snRNA). An RNA stem-loop is a secondary RNA structure consisting of a double-stranded RNA (dsRNA) stem and a terminal loop. | 1 |
| GO:0030623 | U5 snRNA binding | Interacting selectively and non-covalently with the U5 small nuclear RNA (U5 snRNA). | 1 |
| GO:0071207 | histone pre-mRNA stem-loop binding | Interacting selectively and non-covalently with a conserved stem-loop structure found in histone pre-mRNAs. | 1 |
| GO:0034583 | 21U-RNA binding | Interacting selectively and non-covalently with a 21U-RNA, a 21-nucleotide RNA characterized by a uridine 5'-monophosphate and a modified 3' end resistant to periodate degradation. 21U-RNAs are derived from distinct, autonomously expressed loci within the genome. | 1 |
| GO:0030619 | U1 snRNA binding | Interacting selectively and non-covalently with the U1 small nuclear RNA (U1 snRNA). | 1 |
| GO:0070034 | telomeric RNA binding | Interacting selectively and non-covalently with the telomerase RNA template or to RNA complementary to it. | 1 |
| GO:0034513 | box H/ACA snoRNA binding | Interacting selectively and non-covalently with box H/ACA small nucleolar RNA. | 1 |