Psyllid ID: psy10002

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MPMAFSTPTAFIYHLYTGINLSDDRTQIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccEEEEEccccccccHHHHHHHHHHHHHHcccEEEccEEEEEEcccccEEccEEEEEEEcccccccEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEccccccccccccEEEccccccEEccHHHHHHHHHHHHHcccccEEEEEEcccccccEEEEEEEccccccccEEEEcccccccccEEEEEcccEEEEEcccHHHHEcccEEEEEccccccEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
MPMAFSTPTAFIYHLYTginlsddrtqihGLLKINKIHCIIFISsqaglkvgvqqrgcnglsytLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQLTLLGTEMDYVENKLSsefvfnnpnikgtcgcgesfsv
Flexible Loop (DISEMBL)
MPMAFSTPTAFIYHLYTGINLSDDRTQIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSefvfnnpnikgtcgcgesfsv
Low Complexity Region (SEG)
MPMAFSTPTAFIYHLYTGINLSDDRTQIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV
Disordered region (IsUnstruct)
*******PTAFIYHLYTGINLSDDRTQIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGC******
Disordered Region (DISOPRED)
*******************NLSDDRTQIHGLL************SQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFS*
Disordered Region (DISEMBL)
MPMAFSTPTAFIYHLYTGINLSDDRTQIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV
Disordered Region (DISPRO)
*****ST**AFIYHLYTGINLSDDRTQIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTC*CGE****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPMAFSTPTAFIYHLYTGINLSDDRTQIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q4QRC6	129	Iron-sulfur cluster assem	yes	N/A	0.572	0.643	0.683	8e-34
Q80W96	129	Iron-sulfur cluster assem	yes	N/A	0.668	0.751	0.637	2e-33
Q9D924	129	Iron-sulfur cluster assem	yes	N/A	0.668	0.751	0.637	3e-33
Q4R5F0	129	Iron-sulfur cluster assem	N/A	N/A	0.668	0.751	0.628	3e-33
Q9BUE6	129	Iron-sulfur cluster assem	yes	N/A	0.668	0.751	0.628	3e-33
Q3SZG8	129	Iron-sulfur cluster assem	yes	N/A	0.668	0.751	0.628	3e-33
Q5ZJ74	129	Iron-sulfur cluster assem	yes	N/A	0.572	0.643	0.683	6e-33
Q8LBM4	137	Iron-sulfur assembly prot	yes	N/A	0.648	0.686	0.467	3e-22
Q54VS1	139	Iron-sulfur cluster assem	yes	N/A	0.579	0.604	0.448	1e-20
Q07821	250	Iron-sulfur assembly prot	yes	N/A	0.565	0.328	0.474	6e-20

>sp|Q4QRC6|ISCA1_DANRE Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Danio rerio GN=isca1 PE=2 SV=1

 Score =  142 bits (357), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 79/98 (80%), Gaps = 15/98 (15%)

Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
           GLKVGV+ RGCNGL+YTL+Y K+KE+ DEEV+QD               GVR+FI++KAQ
Sbjct: 47  GLKVGVRTRGCNGLTYTLDYTKNKEQSDEEVLQD---------------GVRVFIEKKAQ 91

Query: 108 LTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
           LTLLGTEMD+VE KLSSEFVFNNPNIKGTCGCGESF++
Sbjct: 92  LTLLGTEMDFVETKLSSEFVFNNPNIKGTCGCGESFNI 129

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.
Danio rerio (taxid: 7955)

>sp|Q80W96|ISCA1_RAT Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Rattus norvegicus GN=Isca1 PE=2 SV=1

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 83/113 (73%), Gaps = 16/113 (14%)

Query: 34  INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
           +NKI  ++    +  GLKVGV+ RGCNGLSY+L Y K K   DEEVIQD           
Sbjct: 32  VNKIKQLLKDKPEHVGLKVGVRTRGCNGLSYSLEYTKTKGDADEEVIQD----------- 80

Query: 93  FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
               GVR+FI++KAQLTLLGTEMDYVE+KLSSEFVFNNPNIKGTCGCGESF+V
Sbjct: 81  ----GVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNV 129

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Rattus norvegicus (taxid: 10116)

>sp|Q9D924|ISCA1_MOUSE Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Mus musculus GN=Isca1 PE=2 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 82/113 (72%), Gaps = 16/113 (14%)

Query: 34  INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
           +NKI  ++    +  GLKVGV+ RGCNGLSY+L Y K K   DEEVIQD           
Sbjct: 32  VNKIKQLLKDKPEHVGLKVGVRTRGCNGLSYSLEYTKTKGDSDEEVIQD----------- 80

Query: 93  FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
               GVR+FI++KAQLTLLGTEMDYVE+KLSSEFVFNNPNIKGTCGCGESF V
Sbjct: 81  ----GVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFHV 129

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Mus musculus (taxid: 10090)

>sp|Q4R5F0|ISCA1_MACFA Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Macaca fascicularis GN=ISCA1 PE=2 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 83/113 (73%), Gaps = 16/113 (14%)

Query: 34  INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
           +NKI  ++    +  G+KVGV+ RGCNGLSYTL Y K K   DEEVIQD           
Sbjct: 32  VNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQD----------- 80

Query: 93  FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
               GVR+FI++KAQLTLLGTEMDYVE+KLSSEFVFNNPNIKGTCGCGESF++
Sbjct: 81  ----GVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNI 129

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Macaca fascicularis (taxid: 9541)

>sp|Q9BUE6|ISCA1_HUMAN Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Homo sapiens GN=ISCA1 PE=2 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 83/113 (73%), Gaps = 16/113 (14%)

Query: 34  INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
           +NKI  ++    +  G+KVGV+ RGCNGLSYTL Y K K   DEEVIQD           
Sbjct: 32  VNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQD----------- 80

Query: 93  FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
               GVR+FI++KAQLTLLGTEMDYVE+KLSSEFVFNNPNIKGTCGCGESF++
Sbjct: 81  ----GVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNI 129

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Homo sapiens (taxid: 9606)

>sp|Q3SZG8|ISCA1_BOVIN Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Bos taurus GN=ISCA1 PE=2 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 83/113 (73%), Gaps = 16/113 (14%)

Query: 34  INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
           +NKI  ++    +  G+KVGV+ RGCNGLSYTL Y K K   DEEVIQD           
Sbjct: 32  VNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQD----------- 80

Query: 93  FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
               GVR+FI++KAQLTLLGTEMDYVE+KLSSEFVFNNPNIKGTCGCGESF++
Sbjct: 81  ----GVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNI 129

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Bos taurus (taxid: 9913)

>sp|Q5ZJ74|ISCA1_CHICK Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Gallus gallus GN=ISCA1 PE=2 SV=1

 Score =  139 bits (350), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/98 (68%), Positives = 76/98 (77%), Gaps = 15/98 (15%)

Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
           G+KVGV+ RGCNGLSYTL Y K K   DEEV+QD               GVR+FI++KAQ
Sbjct: 47  GVKVGVRTRGCNGLSYTLEYTKSKGDSDEEVVQD---------------GVRVFIEKKAQ 91

Query: 108 LTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
           LTLLGTEMDYVE+KLSSEFVFNNPNIKGTCGCGESF++
Sbjct: 92  LTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNI 129

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Gallus gallus (taxid: 9031)

>sp|Q8LBM4|ISAM1_ARATH Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g16710 PE=2 SV=2

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 72/109 (66%), Gaps = 15/109 (13%)

Query: 35  NKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFH 94
           +++H ++    +  L++GV+ RGCNGLSYTLNYA +K K DE V +              
Sbjct: 31  SRVHHLLQQRQKPFLRLGVKARGCNGLSYTLNYADEKGKFDELVEE-------------- 76

Query: 95  VSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESF 143
             GVRI ++ KA + ++GT+MD+V++KL SEFVF NPN +G CGCGESF
Sbjct: 77  -KGVRILVEPKALMHVIGTKMDFVDDKLRSEFVFINPNSQGQCGCGESF 124

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54VS1|ISCA1_DICDI Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=isca1 PE=3 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 63/98 (64%), Gaps = 14/98 (14%)

Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
           GL++G+++RGC+G+SYTL++A  K K DE V+ D                + I +D KA 
Sbjct: 42  GLRLGIKERGCSGMSYTLDFATQKNKFDETVVAD--------------KDINIIVDSKAL 87

Query: 108 LTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
           L+++GTEMDY+E  +  EF+F NPN   TCGCGESF+ 
Sbjct: 88  LSVIGTEMDYIEEPIKKEFIFINPNATNTCGCGESFTT 125

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Dictyostelium discoideum (taxid: 44689)

>sp|Q07821|ISA1_YEAST Iron-sulfur assembly protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISA1 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 63/97 (64%), Gaps = 15/97 (15%)

Query: 49  LKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQL 108
           ++V  + RGC+GL+Y L Y  +  K DE V QD               GV+I ID KA  
Sbjct: 169 IRVSARNRGCSGLTYDLQYITEPGKFDEVVEQD---------------GVKIVIDSKALF 213

Query: 109 TLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
           +++G+EMD++++KL+S+FVF NPN KGTCGCGESF V
Sbjct: 214 SIIGSEMDWIDDKLASKFVFKNPNSKGTCGCGESFMV 250

Involved in the assembly of mitochondrial and cytoplasmic iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
307190801	130	Iron-sulfur cluster assembly 1-like prot	0.668	0.746	0.716	2e-37
322795676	130	hypothetical protein SINV_04847 [Solenop	0.882	0.984	0.586	2e-36
345482499	137	PREDICTED: iron-sulfur cluster assembly	0.606	0.642	0.728	7e-36
307207446	130	Iron-sulfur cluster assembly 1-like prot	0.668	0.746	0.690	1e-35
156537934	130	PREDICTED: iron-sulfur cluster assembly	0.668	0.746	0.681	1e-35
332374118	129	unknown [Dendroctonus ponderosae]	0.6	0.674	0.725	3e-35
332026999	102	Iron-sulfur cluster assembly 1-like prot	0.668	0.950	0.690	2e-34
91091584	129	PREDICTED: similar to conserved hypothet	0.572	0.643	0.724	3e-34
195045788	130	GH24545 [Drosophila grimshawi] gi|193892	0.572	0.638	0.714	7e-34
170033040	130	conserved hypothetical protein [Culex qu	0.668	0.746	0.637	8e-34

>gi|307190801|gb|EFN74670.1| Iron-sulfur cluster assembly 1-like protein, mitochondrial [Camponotus floridanus]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 90/113 (79%), Gaps = 16/113 (14%)

Query: 34  INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
           +NKI  I+   ++  GLKVGV+QRGCNGLSYT+NYAK+K K+DEEVIQD           
Sbjct: 33  VNKIKEILKDKTEYIGLKVGVRQRGCNGLSYTMNYAKEKSKLDEEVIQD----------- 81

Query: 93  FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
               GVRIFIDRKAQL+LLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV
Sbjct: 82  ----GVRIFIDRKAQLSLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 130

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795676|gb|EFZ18355.1| hypothetical protein SINV_04847 [Solenopsis invicta]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/145 (58%), Positives = 98/145 (67%), Gaps = 17/145 (11%)

Query: 3   MAFSTPTAFIYHLYTGINLSDDRTQIH-GLLKINKIHCIIFISSQ-AGLKVGVQQRGCNG 60
           MA +T  A       G  +   R  +    + + KI  I+   S+  GLKVGV+QRGCNG
Sbjct: 1   MASTTVAAATIRAVKGRKILSTRAALTLTPIAVKKIKEILKDKSEYIGLKVGVRQRGCNG 60

Query: 61  LSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQLTLLGTEMDYVEN 120
           LSYTL+YAK+K K+DEEVIQD               GVRIFIDRKAQL+LLGTEMDY EN
Sbjct: 61  LSYTLDYAKEKSKLDEEVIQD---------------GVRIFIDRKAQLSLLGTEMDYTEN 105

Query: 121 KLSSEFVFNNPNIKGTCGCGESFSV 145
           KLSSEF+FNNPNIKGTCGCGESFSV
Sbjct: 106 KLSSEFIFNNPNIKGTCGCGESFSV 130

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482499|ref|XP_003424609.1| PREDICTED: iron-sulfur cluster assembly 1 homolog, mitochondrial-like isoform 2 [Nasonia vitripennis]

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 75/103 (72%), Positives = 83/103 (80%), Gaps = 15/103 (14%)

Query: 43  ISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFI 102
           I+ Q GLKVGV+QRGCNGLSYTL+YA DK K+DEEV+QD               GVR+ I
Sbjct: 50  ITFQIGLKVGVRQRGCNGLSYTLDYATDKSKLDEEVVQD---------------GVRVII 94

Query: 103 DRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
           DRKAQL+LLGTEMDY+ENKLSSEFVFNNPNIKGTCGCGESFSV
Sbjct: 95  DRKAQLSLLGTEMDYIENKLSSEFVFNNPNIKGTCGCGESFSV 137

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207446|gb|EFN85161.1| Iron-sulfur cluster assembly 1-like protein, mitochondrial [Harpegnathos saltator]

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 88/113 (77%), Gaps = 16/113 (14%)

Query: 34  INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
           +NKI  I+   S+   LKVGV+QRGCNGLSYTL+YAK+K K+DEEV+QD           
Sbjct: 33  VNKIKEILKDKSEYIALKVGVRQRGCNGLSYTLDYAKEKSKLDEEVVQD----------- 81

Query: 93  FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
                VRIFIDRKAQL+LLGTEMDYVE+KLSSEFVFNNPNIKGTCGCGESFSV
Sbjct: 82  ----DVRIFIDRKAQLSLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFSV 130

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537934|ref|XP_001608294.1| PREDICTED: iron-sulfur cluster assembly 1 homolog, mitochondrial-like isoform 1 [Nasonia vitripennis]

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/113 (68%), Positives = 87/113 (76%), Gaps = 16/113 (14%)

Query: 34  INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
           +NKI  I+    +  GLKVGV+QRGCNGLSYTL+YA DK K+DEEV+QD           
Sbjct: 33  VNKIKEILKDKPEYIGLKVGVRQRGCNGLSYTLDYATDKSKLDEEVVQD----------- 81

Query: 93  FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
               GVR+ IDRKAQL+LLGTEMDY+ENKLSSEFVFNNPNIKGTCGCGESFSV
Sbjct: 82  ----GVRVIIDRKAQLSLLGTEMDYIENKLSSEFVFNNPNIKGTCGCGESFSV 130

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374118|gb|AEE62200.1| unknown [Dendroctonus ponderosae]

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/102 (72%), Positives = 81/102 (79%), Gaps = 15/102 (14%)

Query: 44  SSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFID 103
           S   GLK+GV+QRGCNGLSYTL YA  KEK+DEEV+QD               GVR+FID
Sbjct: 43  SDYVGLKIGVRQRGCNGLSYTLEYADKKEKLDEEVVQD---------------GVRVFID 87

Query: 104 RKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
           +KAQLTLLGTEMD+VENKLSSEFVFNNPNIKGTCGCGESFSV
Sbjct: 88  KKAQLTLLGTEMDFVENKLSSEFVFNNPNIKGTCGCGESFSV 129

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026999|gb|EGI67095.1| Iron-sulfur cluster assembly 1-like protein, mitochondrial [Acromyrmex echinatior]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 87/113 (76%), Gaps = 16/113 (14%)

Query: 34  INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
           + KI  I+   S+  GLKVGV+QRGCNGLSYTL+YAK+K K+DEEVIQD           
Sbjct: 5   VKKIKEILKDKSEYIGLKVGVRQRGCNGLSYTLDYAKEKSKLDEEVIQD----------- 53

Query: 93  FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
                VRIFIDRKAQL+LLGTEMDY ENKLSSEF+FNNPNIKGTCGCGESFSV
Sbjct: 54  ----DVRIFIDRKAQLSLLGTEMDYTENKLSSEFIFNNPNIKGTCGCGESFSV 102

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091584|ref|XP_968263.1| PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum] gi|270001035|gb|EEZ97482.1| hypothetical protein TcasGA2_TC011316 [Tribolium castaneum]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/98 (72%), Positives = 80/98 (81%), Gaps = 15/98 (15%)

Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
           GLK+GV+QRGCNGLSYTL+Y   K+KMDEEV+QD               GVRIFID+KAQ
Sbjct: 47  GLKIGVKQRGCNGLSYTLDYVDKKDKMDEEVVQD---------------GVRIFIDKKAQ 91

Query: 108 LTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
           LTLLGTEMDYV+NKLSSEFVFNNPNIKGTCGCGESF++
Sbjct: 92  LTLLGTEMDYVQNKLSSEFVFNNPNIKGTCGCGESFNI 129

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195045788|ref|XP_001992036.1| GH24545 [Drosophila grimshawi] gi|193892877|gb|EDV91743.1| GH24545 [Drosophila grimshawi]

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 70/98 (71%), Positives = 81/98 (82%), Gaps = 15/98 (15%)

Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
           GLKVGV+QRGCNGLSYTLNYA  K+K+DEEV+QD               GV++FID+KAQ
Sbjct: 48  GLKVGVRQRGCNGLSYTLNYASTKDKLDEEVLQD---------------GVKVFIDKKAQ 92

Query: 108 LTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
           L+LLGTEMD+VE+KLSSEFVFNNPNIKGTCGCGESFS+
Sbjct: 93  LSLLGTEMDFVESKLSSEFVFNNPNIKGTCGCGESFSM 130

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170033040|ref|XP_001844387.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167873501|gb|EDS36884.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  148 bits (373), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 88/113 (77%), Gaps = 16/113 (14%)

Query: 34  INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
           +N+I  ++   S+  GLKVGV+QRGCNGLSYTL+YA  K+KMDEEV+QD           
Sbjct: 33  VNRIKQLLQGKSEYIGLKVGVRQRGCNGLSYTLDYATTKDKMDEEVVQD----------- 81

Query: 93  FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
               GV++ ID+KAQL+LLGTEMD+VENKLS+EFVFNNPNIKGTCGCGESFS+
Sbjct: 82  ----GVKVLIDKKAQLSLLGTEMDFVENKLSAEFVFNNPNIKGTCGCGESFSI 130

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
FB|FBgn0026666	130	l(1)G0136 "lethal (1) G0136" [	0.572	0.638	0.704	1.3e-31
ZFIN|ZDB-GENE-050626-94	129	isca1 "iron-sulfur cluster ass	0.668	0.751	0.610	1.1e-30
UNIPROTKB|E2RM27	178	ISCA1 "Uncharacterized protein	0.668	0.544	0.628	1.4e-30
UNIPROTKB|Q3SZG8	129	ISCA1 "Iron-sulfur cluster ass	0.668	0.751	0.628	2.3e-30
UNIPROTKB|B4DJI5	176	ISCA1 "Iron-sulfur cluster ass	0.668	0.551	0.628	2.3e-30
UNIPROTKB|Q9BUE6	129	ISCA1 "Iron-sulfur cluster ass	0.668	0.751	0.628	2.3e-30
RGD|727792	129	Isca1 "iron-sulfur cluster ass	0.668	0.751	0.637	2.3e-30
UNIPROTKB|F1S4I4	170	ISCA1 "Uncharacterized protein	0.668	0.570	0.619	3e-30
MGI|MGI:1916296	129	Isca1 "iron-sulfur cluster ass	0.668	0.751	0.637	3.8e-30
UNIPROTKB|Q5ZJ74	129	ISCA1 "Iron-sulfur cluster ass	0.572	0.643	0.683	6.2e-30

FB|FBgn0026666 l(1)G0136 "lethal (1) G0136" [Drosophila melanogaster (taxid:7227)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 69/98 (70%), Positives = 81/98 (82%)

Query:    48 GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
             GLKVGV+QRGCNGLSYTL+YA  K+K+DEEV+QD               GV++FID+KAQ
Sbjct:    48 GLKVGVRQRGCNGLSYTLDYASQKDKLDEEVVQD---------------GVKVFIDKKAQ 92

Query:   108 LTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
             L+LLGTEMD+VE+KLSSEFVFNNPNIKGTCGCGESFS+
Sbjct:    93 LSLLGTEMDFVESKLSSEFVFNNPNIKGTCGCGESFSM 130

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

ZFIN|ZDB-GENE-050626-94 isca1 "iron-sulfur cluster assembly 1" [Danio rerio (taxid:7955)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 69/113 (61%), Positives = 86/113 (76%)

Query:    34 INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
             +NK+  ++    +  GLKVGV+ RGCNGL+YTL+Y K+KE+ DEEV+QD           
Sbjct:    32 VNKVKQLLDNKPEYIGLKVGVRTRGCNGLTYTLDYTKNKEQSDEEVLQD----------- 80

Query:    93 FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
                 GVR+FI++KAQLTLLGTEMD+VE KLSSEFVFNNPNIKGTCGCGESF++
Sbjct:    81 ----GVRVFIEKKAQLTLLGTEMDFVETKLSSEFVFNNPNIKGTCGCGESFNI 129

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0006783 "heme biosynthetic process" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2RM27 ISCA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 71/113 (62%), Positives = 83/113 (73%)

Query:    34 INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
             +NKI  ++    +  GLKVGV+ RGCNGLSYTL Y K K   DEEV+QD           
Sbjct:    81 VNKIKQLLKDKPEHVGLKVGVRTRGCNGLSYTLEYTKTKGDSDEEVVQD----------- 129

Query:    93 FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
                 GVR+FI++KAQLTLLGTEMDYVE+KLSSEFVFNNPNIKGTCGCGESF++
Sbjct:   130 ----GVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNI 178

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|Q3SZG8 ISCA1 "Iron-sulfur cluster assembly 1 homolog, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 71/113 (62%), Positives = 83/113 (73%)

Query:    34 INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
             +NKI  ++    +  G+KVGV+ RGCNGLSYTL Y K K   DEEVIQD           
Sbjct:    32 VNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQD----------- 80

Query:    93 FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
                 GVR+FI++KAQLTLLGTEMDYVE+KLSSEFVFNNPNIKGTCGCGESF++
Sbjct:    81 ----GVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNI 129

GO:0005739 "mitochondrion" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|B4DJI5 ISCA1 "Iron-sulfur cluster assembly 1 homolog, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 71/113 (62%), Positives = 83/113 (73%)

Query:    34 INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
             +NKI  ++    +  G+KVGV+ RGCNGLSYTL Y K K   DEEVIQD           
Sbjct:    79 VNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQD----------- 127

Query:    93 FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
                 GVR+FI++KAQLTLLGTEMDYVE+KLSSEFVFNNPNIKGTCGCGESF++
Sbjct:   128 ----GVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNI 176

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

UNIPROTKB|Q9BUE6 ISCA1 "Iron-sulfur cluster assembly 1 homolog, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 71/113 (62%), Positives = 83/113 (73%)

Query:    34 INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
             +NKI  ++    +  G+KVGV+ RGCNGLSYTL Y K K   DEEVIQD           
Sbjct:    32 VNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQD----------- 80

Query:    93 FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
                 GVR+FI++KAQLTLLGTEMDYVE+KLSSEFVFNNPNIKGTCGCGESF++
Sbjct:    81 ----GVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNI 129

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|727792 Isca1 "iron-sulfur cluster assembly 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 72/113 (63%), Positives = 83/113 (73%)

Query:    34 INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
             +NKI  ++    +  GLKVGV+ RGCNGLSY+L Y K K   DEEVIQD           
Sbjct:    32 VNKIKQLLKDKPEHVGLKVGVRTRGCNGLSYSLEYTKTKGDADEEVIQD----------- 80

Query:    93 FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
                 GVR+FI++KAQLTLLGTEMDYVE+KLSSEFVFNNPNIKGTCGCGESF+V
Sbjct:    81 ----GVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNV 129

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050886 "endocrine process" evidence=NAS

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

UNIPROTKB|F1S4I4 ISCA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 70/113 (61%), Positives = 83/113 (73%)

Query:    34 INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
             +NKI  ++    +  G+KVGV+ RGCNGLSYTL Y K K   DEEV+QD           
Sbjct:    73 VNKIKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVVQD----------- 121

Query:    93 FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
                 GVR+FI++KAQLTLLGTEMDYVE+KLSSEFVFNNPNIKGTCGCGESF++
Sbjct:   122 ----GVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNI 170

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

MGI|MGI:1916296 Isca1 "iron-sulfur cluster assembly 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 72/113 (63%), Positives = 82/113 (72%)

Query:    34 INKIHCIIFISSQ-AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
             +NKI  ++    +  GLKVGV+ RGCNGLSY+L Y K K   DEEVIQD           
Sbjct:    32 VNKIKQLLKDKPEHVGLKVGVRTRGCNGLSYSLEYTKTKGDSDEEVIQD----------- 80

Query:    93 FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
                 GVR+FI++KAQLTLLGTEMDYVE+KLSSEFVFNNPNIKGTCGCGESF V
Sbjct:    81 ----GVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFHV 129

GO:0003674 "molecular_function" evidence=ND

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

UNIPROTKB|Q5ZJ74 ISCA1 "Iron-sulfur cluster assembly 1 homolog, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 67/98 (68%), Positives = 76/98 (77%)

Query:    48 GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
             G+KVGV+ RGCNGLSYTL Y K K   DEEV+QD               GVR+FI++KAQ
Sbjct:    47 GVKVGVRTRGCNGLSYTLEYTKSKGDSDEEVVQD---------------GVRVFIEKKAQ 91

Query:   108 LTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
             LTLLGTEMDYVE+KLSSEFVFNNPNIKGTCGCGESF++
Sbjct:    92 LTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNI 129

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B4T0S0	ISCA_SALNS	No assigned EC number	0.3611	0.6206	0.8411	yes	N/A
Q3SZG8	ISCA1_BOVIN	No assigned EC number	0.6283	0.6689	0.7519	yes	N/A
Q8LBM4	ISAM1_ARATH	No assigned EC number	0.4678	0.6482	0.6861	yes	N/A
Q80W96	ISCA1_RAT	No assigned EC number	0.6371	0.6689	0.7519	yes	N/A
Q6D261	ISCA_ERWCT	No assigned EC number	0.3831	0.6137	0.8317	yes	N/A
Q9BUE6	ISCA1_HUMAN	No assigned EC number	0.6283	0.6689	0.7519	yes	N/A
C6DBI9	ISCA_PECCP	No assigned EC number	0.3644	0.6137	0.8317	yes	N/A
Q5ZJ74	ISCA1_CHICK	No assigned EC number	0.6836	0.5724	0.6434	yes	N/A
Q9D924	ISCA1_MOUSE	No assigned EC number	0.6371	0.6689	0.7519	yes	N/A
Q4QRC6	ISCA1_DANRE	No assigned EC number	0.6836	0.5724	0.6434	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	145
TIGR00049	105	TIGR00049, TIGR00049, Iron-sulfur cluster assembly	1e-35
COG0316	110	COG0316, sufA, Fe-S cluster assembly scaffold prot	6e-31
TIGR02011	105	TIGR02011, IscA, iron-sulfur cluster assembly prot	8e-22
TIGR01997	107	TIGR01997, sufA_proteo, FeS assembly scaffold SufA	1e-20
PRK09502	107	PRK09502, iscA, iron-sulfur cluster assembly prote	1e-20
PRK09504	122	PRK09504, sufA, iron-sulfur cluster assembly scaff	2e-17
pfam01521	91	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosy	9e-17
PRK13623	115	PRK13623, PRK13623, iron-sulfur cluster insertion	2e-14
PLN03082	163	PLN03082, PLN03082, Iron-sulfur cluster assembly;	3e-07

>gnl|CDD|232799 TIGR00049, TIGR00049, Iron-sulfur cluster assembly accessory protein

 Score =  118 bits (298), Expect = 1e-35
 Identities = 44/99 (44%), Positives = 57/99 (57%), Gaps = 15/99 (15%)

Query: 47  AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKA 106
            GL+VGV+  GC+GL Y L +  +  + DE   QD               GV++ +D K+
Sbjct: 22  LGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQD---------------GVKVVVDPKS 66

Query: 107 QLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
              L G+E+DYVE  L S F F NPN KGTCGCG+SFSV
Sbjct: 67  LPYLDGSEIDYVEELLGSGFTFTNPNAKGTCGCGKSFSV 105

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105

>gnl|CDD|223393 COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

 Score =  106 bits (268), Expect = 6e-31
 Identities = 42/98 (42%), Positives = 55/98 (56%), Gaps = 15/98 (15%)

Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
           GL+VGV+  GC+G  Y L +  +  + D    QD               GV++ +D K+ 
Sbjct: 28  GLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQD---------------GVKVVVDPKSL 72

Query: 108 LTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
             L GTE+DYVE+ L S F F NPN K +CGCGESFSV
Sbjct: 73  PYLEGTEIDYVEDLLGSGFTFKNPNAKSSCGCGESFSV 110

Length = 110

>gnl|CDD|213674 TIGR02011, IscA, iron-sulfur cluster assembly protein IscA

 Score = 83.3 bits (206), Expect = 8e-22
 Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 15/98 (15%)

Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
           GL++GV+  GC+G++Y L +  D+   D+ V              F   GV+I ID K+ 
Sbjct: 23  GLRLGVKTSGCSGMAYVLEFV-DEPTPDDIV--------------FEDKGVKIVIDGKSL 67

Query: 108 LTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
             L GT++D+V+  L+  F F NPN+K  CGCGESF V
Sbjct: 68  QYLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFHV 105

This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105

>gnl|CDD|131052 TIGR01997, sufA_proteo, FeS assembly scaffold SufA

 Score = 80.6 bits (199), Expect = 1e-20
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 16/112 (14%)

Query: 35  NKIHCIIFISSQA-GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFF 93
             I  ++    +A G+++GV++ GC G+ Y L+   + +K D+ +  D            
Sbjct: 11  IHIRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHD------------ 58

Query: 94  HVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
              G ++F+  +A L +LGT++D+V   L   F FNNPN    CGCGESF +
Sbjct: 59  ---GAKVFVAPEAVLFILGTQVDFVRTTLRQGFKFNNPNATSACGCGESFEL 107

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 107

>gnl|CDD|181914 PRK09502, iscA, iron-sulfur cluster assembly protein; Provisional

 Score = 80.7 bits (199), Expect = 1e-20
 Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 15/98 (15%)

Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
           GL++GV+  GC+G++Y L +  D+   ++ V +D               GV++ +D K+ 
Sbjct: 25  GLRLGVRTSGCSGMAYVLEFV-DEPTPEDIVFED--------------KGVKVVVDGKSL 69

Query: 108 LTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
             L GT++D+V+  L+  F F NPN+K  CGCGESF V
Sbjct: 70  QFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFHV 107

Length = 107

>gnl|CDD|181915 PRK09504, sufA, iron-sulfur cluster assembly scaffold protein; Provisional

 Score = 72.8 bits (179), Expect = 2e-17
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 15/98 (15%)

Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
           G+++GV+Q GC G  Y L+   + +K D                 F   G ++F+  +A 
Sbjct: 40  GVRLGVKQTGCAGFGYVLDSVSEPDKDD---------------LVFEHDGAKLFVPLQAM 84

Query: 108 LTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
             + GTE+DYV   L+  F F+NP  +  CGCGESF V
Sbjct: 85  PFIDGTEVDYVREGLNQIFKFHNPKAQNECGCGESFGV 122

Length = 122

>gnl|CDD|110518 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis

 Score = 69.9 bits (172), Expect = 9e-17
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 15/84 (17%)

Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
           GL++GV+  GC+G SY L +  + ++ DE   QD               GV + +D K+ 
Sbjct: 23  GLRIGVRYGGCSGFSYGLTFEDEPDEGDEVFEQD---------------GVTVVVDEKSL 67

Query: 108 LTLLGTEMDYVENKLSSEFVFNNP 131
             L GTE+D+VE  L S F F+NP
Sbjct: 68  PYLEGTEIDFVEELLGSGFTFSNP 91

This family is involved in iron-sulphur cluster biosynthesis. Its members include proteins that are involved in nitrogen fixation such as the HesB and HesB-like proteins. Length = 91

>gnl|CDD|184186 PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional

 Score = 64.6 bits (158), Expect = 2e-14
 Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 15/97 (15%)

Query: 49  LKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQL 108
           L+V +   GC+G  Y   +       DE+V +D               GV + +D  +  
Sbjct: 34  LRVYITGGGCSGFQYGFTF-------DEQVNED--------DTTIEKQGVTLVVDPMSLQ 78

Query: 109 TLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
            L+G E+DY E    S FV  NPN K TCGCG SFS+
Sbjct: 79  YLVGAEVDYTEGLEGSRFVIKNPNAKTTCGCGSSFSI 115

Length = 115

>gnl|CDD|215564 PLN03082, PLN03082, Iron-sulfur cluster assembly; Provisional

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 16/98 (16%)

Query: 49  LKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQL 108
           L++ V+  GC+G  Y      DK   D+ V              F   GV++ +D  +  
Sbjct: 80  LRLSVETGGCSGFQYVFEL-DDKTNSDDRV--------------FEKDGVKLVVDNISYD 124

Query: 109 TLLGTEMDYVENKLSSEFVFN-NPNIKGTCGCGESFSV 145
            + G  +DYVE  + S FV + NP+  G C C  SF V
Sbjct: 125 FVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV 162

Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
COG0316	110	sufA Fe-S cluster assembly scaffold protein [Postt	100.0
PRK09504	122	sufA iron-sulfur cluster assembly scaffold protein	100.0
PRK09502	107	iscA iron-sulfur cluster assembly protein; Provisi	100.0
PRK13623	115	iron-sulfur cluster insertion protein ErpA; Provis	100.0
TIGR02011	105	IscA iron-sulfur cluster assembly protein IscA. Th	100.0
TIGR01997	107	sufA_proteo FeS assembly scaffold SufA. This model	100.0
PLN03082	163	Iron-sulfur cluster assembly; Provisional	100.0
TIGR00049	105	Iron-sulfur cluster assembly accessory protein. Pr	99.98
KOG1120|consensus	134		99.97
KOG1119|consensus	199		99.94
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.93
TIGR01911	92	HesB_rel_seleno HesB-like selenoprotein. This mode	99.93
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.92
PF01521	112	Fe-S_biosyn: Iron-sulphur cluster biosynthesis; In	99.88
COG4841	95	Uncharacterized protein conserved in bacteria [Fun	99.42
COG4918	114	Uncharacterized protein conserved in bacteria [Fun	98.11
COG3564	116	Uncharacterized protein conserved in bacteria [Fun	90.39
PF05610	95	DUF779: Protein of unknown function (DUF779); Inte	88.55

>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-37  Score=224.72  Aligned_cols=108  Identities=44%  Similarity=0.769  Sum_probs=102.6

Q ss_pred             ccceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceee
Q psy10002         16 YTGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFH   94 (145)
Q Consensus        16 ~~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~   94 (145)
                      +++|+|||+|+ +++++++.+.       .++.+|||+|+++||+|++|.|.|++++.++|.+++.+             
T Consensus         2 ~~~itlT~~Aa~~v~~ll~~~~-------~~~~~lRv~V~~gGCsG~~Y~~~~~~~~~~~D~v~e~~-------------   61 (110)
T COG0316           2 AMMITLTDAAAARVKALLAKEG-------EENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQD-------------   61 (110)
T ss_pred             CCceeeCHHHHHHHHHHHHhcc-------CCCceEEEEEeCCCCCCcEeEEEEcCCCCCCCEEEEeC-------------
Confidence            57899999995 8999999863       56889999999999999999999999889999999999             


Q ss_pred             cCceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcCC
Q psy10002         95 VSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV  145 (145)
Q Consensus        95 ~~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~~  145 (145)
                        |++|+||+.|+.||.|++|||+++.+|++|+|+|||++.+||||.||++
T Consensus        62 --g~~v~vD~~S~~~L~G~~IDyv~~~~g~~F~~~NPNA~~~CgCg~Sf~v  110 (110)
T COG0316          62 --GVKVVVDPKSLPYLEGTEIDYVEDLLGSGFTFKNPNAKSSCGCGESFSV  110 (110)
T ss_pred             --CEEEEEChhhhhhhcCCEEEEEEcCcCCceEEECCCCCccccCCCCCCC
Confidence              9999999999999999999999999999999999999999999999985

>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional

Probab=100.00  E-value=6.2e-36  Score=221.00  Aligned_cols=114  Identities=35%  Similarity=0.707  Sum_probs=104.5

Q ss_pred             CCccccccccccceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchh
Q psy10002          6 STPTAFIYHLYTGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKY   84 (145)
Q Consensus         6 ~~~~~~~~~~~~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~   84 (145)
                      =.|+..   .|++|+|||+|+ +|+++++.+        ++..+|||.|+++||+|++|.|.++++++++|.+++.+   
T Consensus         8 ~~~~~~---~~~~I~iT~~A~~~i~~l~~~~--------~~~~~LRi~v~~gGCsG~~Y~~~l~~e~~~~D~v~e~~---   73 (122)
T PRK09504          8 FNPDDF---AWQGLTLTPAAAAHIRELMAKQ--------PGMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHD---   73 (122)
T ss_pred             eccCcC---CcCCEEECHHHHHHHHHHHhcC--------CCCceEEEEEECCCCCceEEEeeecCCCCCCCEEEEeC---
Confidence            356666   699999999995 899999764        34568999999999999999999998889999999999   


Q ss_pred             hhhhhhceeecCceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcCC
Q psy10002         85 WALILTCFFHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV  145 (145)
Q Consensus        85 ~~~~~~~~~~~~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~~  145 (145)
                                  |++|+||+.++.||+|++|||++++.+++|+|.|||++++||||+||++
T Consensus        74 ------------g~~v~Id~~s~~~L~g~~IDy~~~~~~~gF~f~NPna~~~CgCG~SF~v  122 (122)
T PRK09504         74 ------------GAKLFVPLQAMPFIDGTEVDYVREGLNQIFKFHNPKAQNECGCGESFGV  122 (122)
T ss_pred             ------------CEEEEEcHHHHHhhCCcEEEeecCCCcceEEEECCCCCCCcCCCCCeeC
Confidence                        9999999999999999999999999999999999999999999999985

>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional

Probab=100.00  E-value=6.2e-36  Score=215.94  Aligned_cols=106  Identities=37%  Similarity=0.734  Sum_probs=98.4

Q ss_pred             cceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceeec
Q psy10002         17 TGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHV   95 (145)
Q Consensus        17 ~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~~   95 (145)
                      |+|+|||+|+ +|+++++.+        .+..+|||+|+++||+|++|.|.|++++.++|.+++.+              
T Consensus         1 m~i~iT~~A~~~i~~l~~~~--------~~~~~LRi~v~~~GCsG~~Y~l~~~~~~~~~D~~~~~~--------------   58 (107)
T PRK09502          1 MSITLSDSAAARVNTFLANR--------GKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDK--------------   58 (107)
T ss_pred             CeEEECHHHHHHHHHHHhCc--------CCCceEEEEEECCCcCCeeeEeeecCCCCCCCEEEEcC--------------
Confidence            4699999995 899999764        34568999999999999999999988888999999998              


Q ss_pred             CceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcCC
Q psy10002         96 SGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV  145 (145)
Q Consensus        96 ~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~~  145 (145)
                       |++|+||+.++.||+|++|||++++.+++|+|+|||++++||||+||++
T Consensus        59 -g~~v~id~~s~~~l~g~~IDy~~~~~~~~F~f~NPna~~~CgCG~Sf~~  107 (107)
T PRK09502         59 -GVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFHV  107 (107)
T ss_pred             -CeEEEEeHHHHhHhCCCEEEEeeCCCCceEEEECCCCCCccCCCCCeeC
Confidence             9999999999999999999999999999999999999999999999975

>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional

Probab=100.00  E-value=2.2e-35  Score=215.17  Aligned_cols=109  Identities=30%  Similarity=0.608  Sum_probs=100.2

Q ss_pred             cccceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhcee
Q psy10002         15 LYTGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFF   93 (145)
Q Consensus        15 ~~~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~   93 (145)
                      ..|+|+|||+|+ +|+++++.++       .+..+|||+|+++||+|++|.|.+++++.++|.+++.+            
T Consensus         6 ~~~~i~iT~~A~~~i~~~~~~~~-------~~~~~LRi~v~~~GCsG~~y~l~l~~~~~~~D~v~e~~------------   66 (115)
T PRK13623          6 VPLPLVFTDAAAAKVKELIEEEG-------NPDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQ------------   66 (115)
T ss_pred             cCcceEECHHHHHHHHHHHhhCC-------CCceEEEEEEeCCCCCCcEEEEEECCCCCCCCEEEEcC------------
Confidence            357899999995 7999997642       35578999999999999999999998888899999998            


Q ss_pred             ecCceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcCC
Q psy10002         94 HVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV  145 (145)
Q Consensus        94 ~~~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~~  145 (145)
                         |++|+||+.+++||+|++|||++++.+++|+|+|||++++||||+||++
T Consensus        67 ---gv~v~id~~s~~~l~g~~IDy~~~~~~~~F~f~NPn~~~~CgCg~SF~~  115 (115)
T PRK13623         67 ---GVTLVVDPMSLQYLVGAEVDYTEGLEGSRFVIKNPNAKTTCGCGSSFSI  115 (115)
T ss_pred             ---CEEEEEcHHHHHHhCCCEEEeecCCCcceEEEECCCCCcCCCCCcCccC
Confidence               9999999999999999999999999999999999999999999999985

>TIGR02011 IscA iron-sulfur cluster assembly protein IscA

Probab=100.00  E-value=1.6e-34  Score=207.73  Aligned_cols=104  Identities=38%  Similarity=0.750  Sum_probs=96.9

Q ss_pred             eeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceeecCc
Q psy10002         19 INLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSG   97 (145)
Q Consensus        19 I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~~~g   97 (145)
                      |+|||+|+ +|+++++.+        .+..+|||+|+.+||+|++|.|.|++++.++|.+++.+               |
T Consensus         1 I~iT~~A~~~i~~~~~~~--------~~~~~lRi~v~~~GCsG~~y~l~l~~~~~~~D~v~~~~---------------g   57 (105)
T TIGR02011         1 ITLTDSAAARVNTFLANR--------GKGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDK---------------G   57 (105)
T ss_pred             CEECHHHHHHHHHHHhcc--------CCCceEEEEEeCCCCCCEEEEeeecCCCCCCCEEEEcC---------------C
Confidence            68999995 799999764        34568999999999999999999988888999999998               9


Q ss_pred             eEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcCC
Q psy10002         98 VRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV  145 (145)
Q Consensus        98 i~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~~  145 (145)
                      ++|+||+.++.||+|++|||++++.+++|+|+|||++++||||+||++
T Consensus        58 ~~v~id~~s~~~l~g~~IDy~~~~~~~~F~~~nPna~~~CgCg~Sf~~  105 (105)
T TIGR02011        58 VKIVIDGKSLQYLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFHV  105 (105)
T ss_pred             EEEEEcHHHhHHhCCCEEEEecCCCcceEEEECCCCCccCCCCCCccC
Confidence            999999999999999999999999999999999999999999999975

This clade is limited to the proteobacteria.

>TIGR01997 sufA_proteo FeS assembly scaffold SufA

Probab=100.00  E-value=2e-34  Score=207.86  Aligned_cols=104  Identities=38%  Similarity=0.787  Sum_probs=97.5

Q ss_pred             ceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceeecC
Q psy10002         18 GINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVS   96 (145)
Q Consensus        18 ~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~~~   96 (145)
                      +|+|||+|+ +|+++++.+        .+..+|||+|+.+||+|++|.|.++++++++|.+++.+               
T Consensus         2 ~i~iT~~A~~~i~~l~~~~--------~~~~~lRi~v~~~GC~G~~y~~~l~~~~~~~D~v~~~~---------------   58 (107)
T TIGR01997         2 VITLTDAAAIHIRELVAKR--------PEAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHD---------------   58 (107)
T ss_pred             eEEECHHHHHHHHHHHhcC--------CCCcEEEEEEECCCCCCcEEEeeecCCCCCCCEEEecC---------------
Confidence            599999995 899999864        34568999999999999999999988888999999998               


Q ss_pred             ceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcC
Q psy10002         97 GVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFS  144 (145)
Q Consensus        97 gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~  144 (145)
                      |++|+||+.++.||+|++|||++++.+++|+|+|||+++.||||+||+
T Consensus        59 g~~v~id~~s~~~l~g~~IDy~~~~~~~~F~~~NPn~~~~CgCG~Sf~  106 (107)
T TIGR01997        59 GAKVFVAPEAVLFILGTQVDFVRTTLRQGFKFNNPNATSACGCGESFE  106 (107)
T ss_pred             CEEEEEcHHHHhhhCCCEEEEEEcCCcceEEEECCCCCCccCCCCCcc
Confidence            999999999999999999999999999999999999999999999997

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.

>PLN03082 Iron-sulfur cluster assembly; Provisional

Probab=100.00  E-value=3e-34  Score=221.77  Aligned_cols=108  Identities=27%  Similarity=0.551  Sum_probs=99.1

Q ss_pred             cceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceeec
Q psy10002         17 TGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHV   95 (145)
Q Consensus        17 ~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~~   95 (145)
                      +.|+|||+|+ +|+++++.++.      .+..+|||+|+++||+|++|.|.|+++++++|.+++.+              
T Consensus        53 ~~I~lTd~A~~~ik~l~~~~~~------~~~~~LRl~V~~gGCSG~~Y~~~ld~~~~~~D~v~e~~--------------  112 (163)
T PLN03082         53 DAVHMTDNCIRRLKELQTSEPS------AEDKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKD--------------  112 (163)
T ss_pred             CceEECHHHHHHHHHHHHhCCC------CCCceEEEEEecCCCCCceeeeEEccCCCCCCEEEecC--------------
Confidence            4699999995 89999987521      24578999999999999999999998888899999998              


Q ss_pred             CceEEEEcccchhhcCCcEEEEeecCCCcceEE-eCCCCCCCCCCCCCcCC
Q psy10002         96 SGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVF-NNPNIKGTCGCGESFSV  145 (145)
Q Consensus        96 ~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~-~nP~~~~~CgCG~Sf~~  145 (145)
                       |++|+||+.++.||+|++|||++++.+++|+| +|||++++||||+||++
T Consensus       113 -Gv~vvVD~~s~~~L~Gs~IDYve~l~~~gF~f~~NPna~~~CgCG~SF~v  162 (163)
T PLN03082        113 -GVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV  162 (163)
T ss_pred             -CeEEEECHHHHHHhCCCEEEeecCCCCCeeEEecCCCCCCCcCCCCCEeC
Confidence             99999999999999999999999999999999 99999999999999975

>TIGR00049 Iron-sulfur cluster assembly accessory protein

Probab=99.98  E-value=4.4e-32  Score=193.67  Aligned_cols=104  Identities=47%  Similarity=0.830  Sum_probs=96.2

Q ss_pred             eeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceeecCce
Q psy10002         20 NLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGV   98 (145)
Q Consensus        20 ~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~~~gi   98 (145)
                      +||++|+ +|+++++.++       .++.+|||+++.+||+|++|.|.+++.++++|.+++.+               |+
T Consensus         1 ~iT~~A~~~l~~~~~~~~-------~~~~~lRi~~~~~Gc~G~~~~l~l~~~~~~~D~~~~~~---------------gi   58 (105)
T TIGR00049         1 TLTDSAAKRIKALLAGEG-------EPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQD---------------GV   58 (105)
T ss_pred             CcCHHHHHHHHHHHhcCC-------CCceEEEEEEecCCCCCeEEEEeecCCCCCCCEEEEcC---------------CE
Confidence            5899995 8999998753       23578999999999999999999998788899999998               99


Q ss_pred             EEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcCC
Q psy10002         99 RIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV  145 (145)
Q Consensus        99 ~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~~  145 (145)
                      +|+||+.+++||+|++|||+++..+++|+|.|||++++||||+||++
T Consensus        59 ~~~id~~~~~~l~~~~IDy~~~~~~~~f~i~nPn~~~~c~cg~sf~~  105 (105)
T TIGR00049        59 KVVVDPKSLPYLDGSEIDYVEELLGSGFTFTNPNAKGTCGCGKSFSV  105 (105)
T ss_pred             EEEEeHHHHhhhCCCEEEEeecCCcceEEEECCCCCccCCCCcCccC
Confidence            99999999999999999999999999999999999999999999985

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.

>KOG1120|consensus

Probab=99.97  E-value=1.3e-31  Score=198.23  Aligned_cols=107  Identities=64%  Similarity=1.028  Sum_probs=101.5

Q ss_pred             ccceeeCHHH-HHHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceee
Q psy10002         16 YTGINLSDDR-TQIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFH   94 (145)
Q Consensus        16 ~~~I~IT~~A-~~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~   94 (145)
                      ..-|++||.| .+|+++++.+        .+...|||.|+++||+|++|.|.|.+.+.+.|++|+++             
T Consensus        27 k~~ltLTp~Av~~ik~ll~~~--------~e~~~lrigVk~rGCnGlsYtleY~~~kgkfDE~Veqd-------------   85 (134)
T KOG1120|consen   27 KAALTLTPSAVNHIKQLLSDK--------PEDVCLRIGVKQRGCNGLSYTLEYTKTKGKFDEVVEQD-------------   85 (134)
T ss_pred             ccccccCHHHHHHHHHHHHhC--------CcCceeEEEEecCCcCcceeeeeeeccCCCCcceeeec-------------
Confidence            4569999999 5899999975        57899999999999999999999999988999999999             


Q ss_pred             cCceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcCC
Q psy10002         95 VSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV  145 (145)
Q Consensus        95 ~~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~~  145 (145)
                        |++|+|||+++..|-|+++||+++.++++|+|.|||+++.||||+||.+
T Consensus        86 --Gv~I~ie~KA~l~liGteMDyvddkL~Sefvf~npna~gtcGcgeSf~~  134 (134)
T KOG1120|consen   86 --GVRIFIEPKALLTLIGTEMDYVDDKLSSEFVFSNPNAKGTCGCGESFSV  134 (134)
T ss_pred             --CcEEEEcccceeeeccceehhhhhhhcCceEeeCCCccccccccccccC
Confidence              9999999999999999999999999999999999999999999999974

>KOG1119|consensus

Probab=99.94  E-value=2.8e-27  Score=184.58  Aligned_cols=117  Identities=26%  Similarity=0.521  Sum_probs=101.1

Q ss_pred             CCCCcccccccc-ccceeeCHHH-HHHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEec
Q psy10002          4 AFSTPTAFIYHL-YTGINLSDDR-TQIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQD   81 (145)
Q Consensus         4 ~~~~~~~~~~~~-~~~I~IT~~A-~~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~   81 (145)
                      ++++|.+..+-. --.+.|+|+| ++++++....          ...|||.|++|||+||+|.|.+|....++|.++..+
T Consensus        78 ~~ss~~~~~e~~~~~~~~lsds~~krl~EI~~~~----------pe~LRl~VegGGCsGFQYkf~LD~~in~dD~vf~e~  147 (199)
T KOG1119|consen   78 AFSSSSRIPEKSPGFNLHLSDSCSKRLKEIYENS----------PEFLRLTVEGGGCSGFQYKFRLDNKINNDDRVFVEN  147 (199)
T ss_pred             hhcCcccCCccCCCceEEehhHHHHHHHHHHhCC----------cceEEEEEecCCccceEEEEEecCCCCCcceEEeeC
Confidence            445555554331 1238999999 5888888642          278999999999999999999999888999999988


Q ss_pred             chhhhhhhhceeecCceEEEEcccchhhcCCcEEEEeecCCCcceEE-eCCCCCCCCCCCCCcCC
Q psy10002         82 VKYWALILTCFFHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVF-NNPNIKGTCGCGESFSV  145 (145)
Q Consensus        82 ~~~~~~~~~~~~~~~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~-~nP~~~~~CgCG~Sf~~  145 (145)
                                     |.+|+||..|+.+++|++|||+++++++.|++ .||.++.+|+||.||++
T Consensus       148 ---------------~arVVvD~~SL~~~kGatvdy~~ELIrSsF~ivnNP~A~~gCsCgSSF~i  197 (199)
T KOG1119|consen  148 ---------------GARVVVDNVSLNLLKGATVDYTNELIRSSFRIVNNPSAKQGCSCGSSFDI  197 (199)
T ss_pred             ---------------CcEEEEeccchhhccCceeehHHHHhhhhheeecCcccccCCCCCccccc
Confidence                           99999999999999999999999999999976 99999999999999985

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.93  E-value=1.1e-25  Score=177.85  Aligned_cols=95  Identities=25%  Similarity=0.372  Sum_probs=87.3

Q ss_pred             ceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEe--ccCCCCCCeEEEecchhhhhhhhceee
Q psy10002         18 GINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNY--AKDKEKMDEEVIQDVKYWALILTCFFH   94 (145)
Q Consensus        18 ~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l--~~~~~~~D~vv~~~~~~~~~~~~~~~~   94 (145)
                      ||+|||+|+ +|+++++.+        .+..+|||+|+++||+|++|+|.|  ++++.++|.+++.+             
T Consensus         1 ~i~iTd~A~~~i~~ll~~~--------~~~~~LRI~V~~gGCsG~~Y~~~~~~~~~~~~~D~v~e~~-------------   59 (192)
T PRK11190          1 MITISDAAQAHFAKLLANQ--------EEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFD-------------   59 (192)
T ss_pred             CcEECHHHHHHHHHHHhcC--------CCCceEEEEEECCCcCCceeeeEEeecCCCCCCCEEEEeC-------------
Confidence            589999995 899999864        335689999999999999999999  67777899999999             


Q ss_pred             cCceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCC
Q psy10002         95 VSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKG  135 (145)
Q Consensus        95 ~~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~  135 (145)
                        |++|+||+.++.||+|++|||++++.+++|+|+|||+++
T Consensus        60 --gv~v~Vd~~S~~~L~G~~IDyve~~~g~gF~f~NPNa~~   98 (192)
T PRK11190         60 --GFSAYVDELSAPFLEDAEIDFVTDQLGSQLTLKAPNAKM   98 (192)
T ss_pred             --CEEEEECcchHhHhCCCEEEEeecCCCCceEEECCCCCC
Confidence              999999999999999999999999999999999999985

>TIGR01911 HesB_rel_seleno HesB-like selenoprotein

Probab=99.93  E-value=3e-25  Score=156.92  Aligned_cols=90  Identities=19%  Similarity=0.313  Sum_probs=81.4

Q ss_pred             cceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceeec
Q psy10002         17 TGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHV   95 (145)
Q Consensus        17 ~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~~   95 (145)
                      .+|+|||+|+ +|+++++.++       .+..+|||+|+++||+|++|.|.+++ ++++|.+++.+              
T Consensus         2 ~~i~lT~~A~~~i~~ll~~~~-------~~~~~LRi~v~~gGCsG~~Y~~~ld~-~~~~D~v~~~~--------------   59 (92)
T TIGR01911         2 KIVAMSDDAYEEFKDFLKEND-------IDNDVIRIHFAGMGCMGPMFNLIADE-EKEGDEIEKIH--------------   59 (92)
T ss_pred             CceEECHHHHHHHHHHHHhCC-------CCCceEEEEEeCCCccCcccceEecC-CCCCCEEEEeC--------------
Confidence            4799999995 8999998753       33467999999999999999999987 47899999999              


Q ss_pred             CceEEEEcccchhhcCCcEEEEeecCCCcceEEe
Q psy10002         96 SGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFN  129 (145)
Q Consensus        96 ~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~  129 (145)
                       |++|+||+.++.||.|++|||++++.+++|+|+
T Consensus        60 -gv~v~vD~~s~~~l~G~~iDy~~~~~g~gF~~~   92 (92)
T TIGR01911        60 -DLTFLIDKNLIDQFGGFSIECAEENFGAGFSLD   92 (92)
T ss_pred             -CEEEEECHHHHHHhCCCEEEEecCCCCCcEEeC
Confidence             999999999999999999999999999999984

This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.92  E-value=2.5e-24  Score=169.94  Aligned_cols=94  Identities=19%  Similarity=0.344  Sum_probs=85.7

Q ss_pred             eeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEe--ccCCCCCCeEEEecchhhhhhhhceeec
Q psy10002         19 INLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNY--AKDKEKMDEEVIQDVKYWALILTCFFHV   95 (145)
Q Consensus        19 I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l--~~~~~~~D~vv~~~~~~~~~~~~~~~~~   95 (145)
                      |+|||+|+ +|+++++.+        .+..+|||+|+++||+|++|+|.|  .+++.++|.+++.+              
T Consensus         1 I~IT~~A~~~l~~ll~~~--------~~~~~LRv~V~~gGCsG~~Y~l~~~~~~~~~~~D~v~e~~--------------   58 (190)
T TIGR03341         1 ITITEAAQAYLAKLLAKQ--------NEGTGIRVFVVNPGTPYAECCVSYCPPDEVEPSDIKLEFN--------------   58 (190)
T ss_pred             CEECHHHHHHHHHHHhhC--------CCCceEEEEEECCccCCceeeeEEcccCCCCCCCEEEEeC--------------
Confidence            68999995 799999864        345689999999999999999999  56667899999999              


Q ss_pred             CceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCC
Q psy10002         96 SGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKG  135 (145)
Q Consensus        96 ~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~  135 (145)
                       |++|+||+.++.||+|++|||++++.+++|+|+|||++.
T Consensus        59 -g~~v~Vd~~s~~~L~g~~IDyve~~~g~gF~f~NPna~~   97 (190)
T TIGR03341        59 -GFSAYVDALSAPFLEDAVIDFVTDRMGGQLTLKAPNAKM   97 (190)
T ss_pred             -CEEEEEccchhhHhCCCEEEEeecCCCceeEEeCCccCC
Confidence             999999999999999999999999999999999999874

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>PF01521 Fe-S_biosyn: Iron-sulphur cluster biosynthesis; InterPro: IPR000361 The proteins in this entry are variously annotated as iron-sulphur cluster insertion protein or Fe/S biogenesis protein

Probab=99.88  E-value=2.2e-22  Score=144.70  Aligned_cols=100  Identities=32%  Similarity=0.632  Sum_probs=90.2

Q ss_pred             cceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCC--------CC-CceeeEEeccCC-CCCCeEEEecchhh
Q psy10002         17 TGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRG--------CN-GLSYTLNYAKDK-EKMDEEVIQDVKYW   85 (145)
Q Consensus        17 ~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gG--------C~-G~~y~l~l~~~~-~~~D~vv~~~~~~~   85 (145)
                      |.|+|||+|+ +|+++++.++         .. |||++..+|        |+ |++|.|.+++++ .+.|.+++.+    
T Consensus         1 M~I~iT~~A~~~l~~~~~~~~---------~~-irl~~~~gg~p~~~~~~C~~g~~y~l~~~~~~~~~~D~~~~~~----   66 (112)
T PF01521_consen    1 MKITITDAAAERLKQLLKEDP---------KK-IRLFVDDGGSPYSREGCCSIGFSYSLALVDKPDEEYDIVIESN----   66 (112)
T ss_dssp             -EEEE-HHHHHHHHHHHHCTT---------ES-EEEEEEEESSCCGGSS-TTSEEEEEEEEESSTSTTSCEEEEET----
T ss_pred             CEEEECHHHHHHHHHHHhcCC---------CE-EEEEEECCCcccccCCCCCCCcEEeEEEeecccccceEEEeee----
Confidence            6899999995 8999998742         22 999999998        99 999999999877 7899999999    


Q ss_pred             hhhhhceeecCceEEEEcccchhhc-CCcEEEEeecCCCcceEEeCCCCCCCCCCCC
Q psy10002         86 ALILTCFFHVSGVRIFIDRKAQLTL-LGTEMDYVENKLSSEFVFNNPNIKGTCGCGE  141 (145)
Q Consensus        86 ~~~~~~~~~~~gi~v~ID~~s~~~L-~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~  141 (145)
                                 |++|+|++.+++|| +|++|||.++..+.+|++.||+..+.|+||.
T Consensus        67 -----------~~~i~i~~~~~~~l~~~~~iD~~~~~~~~~f~~~~~~~~~~~~~~~  112 (112)
T PF01521_consen   67 -----------GFTIYIDKYSLWYLDEGLTIDYVEDLGGFGFKSDNPNLDSNCGCGD  112 (112)
T ss_dssp             -----------TEEEEEEGGGHHHH-TTEEEEEEEETTEEEEEEETTTEEEEECECE
T ss_pred             -----------EEEEEEeccHhhhhhCCCEEEEEEccCccEEEECCCCcCceeccCC
Confidence                       99999999999999 9999999999999999999999999999984

They appear to be involved in Fe-S cluster biogenesis. This family includes IscA, HesB, YadR and YfhF-like proteins. The hesB gene is expressed only under nitrogen fixation conditions []. IscA, an 11 kDa member of the hesB family of proteins, binds iron and [2Fe-2S] clusters, and participates in the biosynthesis of iron-sulphur proteins. IscA is able to bind at least 2 iron ions per dimer []. Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO) suggesting that they too are able to bind iron and are involved in Fe-S cluster biogenesis. The HesB family are found in species as divergent as Homo sapiens (Human) and Haemophilus influenzae suggesting that these proteins are involved in basic cellular functions []. ; PDB: 2D2A_A 1X0G_D 1NWB_A 2K4Z_A 1R94_B 1R95_A 1S98_B 2P2E_A 2QGO_A 2APN_A.

>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.42  E-value=4.8e-13  Score=93.96  Aligned_cols=87  Identities=18%  Similarity=0.313  Sum_probs=69.4

Q ss_pred             cceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCC----CceeeEEeccCCCCCCeEEEecchhhhhhhhc
Q psy10002         17 TGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCN----GLSYTLNYAKDKEKMDEEVIQDVKYWALILTC   91 (145)
Q Consensus        17 ~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~----G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~   91 (145)
                      |+|+||+.|. -+++.+..         +++..||++|+.|||+    ||+.+++.+ .|++--...+.+          
T Consensus         1 Mni~vtd~A~~wfk~E~~l---------~~g~~vrffvRyGG~~~~~~GFS~gv~~e-~PkE~g~~q~~D----------   60 (95)
T COG4841           1 MNIEVTDQALKWFKEELDL---------EEGNKVRFFVRYGGCSSLQQGFSLGVAKE-VPKEIGYKQEYD----------   60 (95)
T ss_pred             CceEEcHHHHHHHHHhcCC---------CCCCEEEEEEEEcCcccccCCcceeeecc-Cchhhchheeec----------
Confidence            6899999996 49999876         5788999999999998    444544443 244444445667          


Q ss_pred             eeecCceEEEEcccchhhcCC--cEEEEeecCCCcceEE
Q psy10002         92 FFHVSGVRIFIDRKAQLTLLG--TEMDYVENKLSSEFVF  128 (145)
Q Consensus        92 ~~~~~gi~v~ID~~s~~~L~g--~~IDy~e~~~g~gF~~  128 (145)
                           |++++|+.+.+||+++  .+|||+++.....|+.
T Consensus        61 -----gltffiee~DlWYF~d~d~~v~y~~~~Dei~fs~   94 (95)
T COG4841          61 -----GLTFFIEEKDLWYFDDHDLKVDYSPDTDEISFSY   94 (95)
T ss_pred             -----CeEEEEecCceEEEcCCcEEEeccCCCCcceeec
Confidence                 9999999999999999  9999998877776754

>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.11  E-value=7.2e-06  Score=59.34  Aligned_cols=81  Identities=16%  Similarity=0.249  Sum_probs=63.2

Q ss_pred             cceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCC---ceeeEEeccCCCCCCeEEEecchhhhhhhhce
Q psy10002         17 TGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNG---LSYTLNYAKDKEKMDEEVIQDVKYWALILTCF   92 (145)
Q Consensus        17 ~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G---~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~   92 (145)
                      |.|++||+|+ +|+...+.+-       ....+||+..++.||.|   +.|.+.  .+....|..++.+           
T Consensus         1 M~Itftd~a~~~l~~a~d~nl-------~~~~hl~ydtEgc~Ca~SGi~t~rlv--ae~tg~d~~idsn-----------   60 (114)
T COG4918           1 MKITFTDKAADKLKAAGDVNL-------VFDDHLLYDTEGCACAGSGISTYRLV--AEETGFDASIDSN-----------   60 (114)
T ss_pred             CeEEecHHHHHHHHHhhccCc-------CccceEEEeccccccccCCcceEEEE--EeccCcccccccC-----------
Confidence            6799999996 7999988764       24588999999999975   444444  4445678888888           


Q ss_pred             eecCceEEEEcccchhhcCC-cEEEEeecC
Q psy10002         93 FHVSGVRIFIDRKAQLTLLG-TEMDYVENK  121 (145)
Q Consensus        93 ~~~~gi~v~ID~~s~~~L~g-~~IDy~e~~  121 (145)
                          +.+|+|-.-...||++ ++|||.+..
T Consensus        61 ----~gPiyik~~~~~Ff~D~mtidyN~~~   86 (114)
T COG4918          61 ----FGPIYIKDYGSYFFQDEMTIDYNPSY   86 (114)
T ss_pred             ----CCcEEEEecceeEecceeeeecCCcc
Confidence                9999998877777775 999998763

>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.39  E-value=3.1  Score=30.22  Aligned_cols=87  Identities=20%  Similarity=0.226  Sum_probs=52.8

Q ss_pred             ceeeCHHHHH-HHHHHhhccccceeccCCCceEEEEEecCCCC-CceeeEEeccCC---CCCCeEE-Eecchhhhhhhhc
Q psy10002         18 GINLSDDRTQ-IHGLLKINKIHCIIFISSQAGLKVGVQQRGCN-GLSYTLNYAKDK---EKMDEEV-IQDVKYWALILTC   91 (145)
Q Consensus        18 ~I~IT~~A~~-l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~-G~~y~l~l~~~~---~~~D~vv-~~~~~~~~~~~~~   91 (145)
                      .++.|++|.. |.++.+.           -..+-+ -++|||. | +--|-+-...   .+.|+.. +.+          
T Consensus         6 ~V~aT~aAl~Li~~l~~~-----------hgpvmF-HQSGGCCDG-SsPMCYP~~~fivGd~DvlLG~i~----------   62 (116)
T COG3564           6 RVLATPAALDLIAELQAE-----------HGPVMF-HQSGGCCDG-SSPMCYPRADFIVGDNDVLLGEID----------   62 (116)
T ss_pred             ceecCHHHHHHHHHHHHh-----------cCCEEE-eccCCccCC-CCCccccccceeecCCceEEeeeC----------
Confidence            4788999965 5555543           233444 4566665 4 3333332110   1234332 345          


Q ss_pred             eeecCceEEEEcccchhhcC--CcEEEEeecCCCcceEEeCCCC
Q psy10002         92 FFHVSGVRIFIDRKAQLTLL--GTEMDYVENKLSSEFVFNNPNI  133 (145)
Q Consensus        92 ~~~~~gi~v~ID~~s~~~L~--g~~IDy~e~~~g~gF~~~nP~~  133 (145)
                           |++|+|.....++-+  ..+||-+.. -|+.|.++|-..
T Consensus        63 -----gvPvyIs~~QyeaWKHTqLIIDVVpG-RGGmFSLdng~E  100 (116)
T COG3564          63 -----GVPVYISGPQYEAWKHTQLIIDVVPG-RGGMFSLDNGRE  100 (116)
T ss_pred             -----CEEEEecCcHHhhhhccEEEEEEecC-CCceeEccCCcc
Confidence                 999999999887766  588998854 567899987543

>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function

Probab=88.55  E-value=3.2  Score=29.73  Aligned_cols=36  Identities=17%  Similarity=0.248  Sum_probs=31.3

Q ss_pred             ceEEEEcccchhhcCC--cEEEEeecCCCcceEEeCCCC
Q psy10002         97 GVRIFIDRKAQLTLLG--TEMDYVENKLSSEFVFNNPNI  133 (145)
Q Consensus        97 gi~v~ID~~s~~~L~g--~~IDy~e~~~g~gF~~~nP~~  133 (145)
                      |++|+|.+...+|.+.  .+||-++ ..|++|.+.+|..
T Consensus        49 g~~fym~~~qfeywkht~L~iDVv~-GrG~~FSLE~~~G   86 (95)
T PF05610_consen   49 GVPFYMSKDQFEYWKHTQLTIDVVP-GRGGGFSLEAPEG   86 (95)
T ss_pred             CeEEEEchHHHHHhhCcEEEEEEEe-cCCCeeeccCCCC
Confidence            9999999999999996  7899876 4678999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	145
1s98_A	107	E.Coli Isca Crystal Structure To 2.3 A Length = 107		5e-14
1r94_A	118	Crystal Structure Of Isca (mercury Derivative) Leng		9e-14
2d2a_A	145	Crystal Structure Of Escherichia Coli Sufa Involved		4e-12
1nwb_A	124	Solution Nmr Structure Of Protein Aq_1857 From Aqui		1e-08
2apn_A	114	Hi1723 Solution Structure Length = 114		3e-08
1x0g_A	112	Crystal Structure Of Isca With The [2fe-2s] Cluster		8e-05

>pdb|1S98|A Chain A, E.Coli Isca Crystal Structure To 2.3 A Length = 107

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 15/98 (15%)
Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
           GL++GV+  GC+G++Y L +      +DE   +D+          F   GV++ +D K+ 
Sbjct: 25  GLRLGVRTSGCSGMAYVLEF------VDEPTPEDI---------VFEDKGVKVVVDGKSM 69
Query: 108 LTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
             L GT++D+V+  L+  F F NPN+K  CGCGESF V
Sbjct: 70  QFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFHV 107

>pdb|1R94|A Chain A, Crystal Structure Of Isca (mercury Derivative) Length = 118

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 15/98 (15%)
Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
           GL++GV+  GC+G++Y L +      +DE   +D+          F   GV++ +D K+ 
Sbjct: 25  GLRLGVRTSGCSGMAYVLEF------VDEPTPEDI---------VFEDKGVKVVVDGKSL 69
Query: 108 LTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
             L GT++D+V+  L+  F F NPN+K  CGCGESF +
Sbjct: 70  QFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKL 107

>pdb|2D2A|A Chain A, Crystal Structure Of Escherichia Coli Sufa Involved In Biosynthesis Of Iron-Sulfur Clusters Length = 145

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 31  LLKINKIHCIIFISSQAGL---KVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWAL 87
           L     IH    ++ Q G+   ++GV+Q GC G  Y L+   + +K D            
Sbjct: 43  LTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDD------------ 90
Query: 88  ILTCFFHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
                F   G ++F+  +A   + GTE+D+V   L+  F F+NP  +  CGCGESF V
Sbjct: 91  ---LLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFGV 145

>pdb|1NWB|A Chain A, Solution Nmr Structure Of Protein Aq_1857 From Aquifex Aeolicus: Northeast Structural Genomics Consortium Target Qr6 Length = 124

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Query: 49  LKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQL 108
           L++ V   GC+G  Y + +    E+ D                 F   GV++ ID  +  
Sbjct: 34  LRIRVVPGGCSGFQYAMGFDDTVEEGDH---------------VFEYDGVKVVIDPFSMP 78
Query: 109 TLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFS 144
            + G E+DYV + +   F   NPN  G+CGCG SFS
Sbjct: 79  YVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFS 114

>pdb|2APN|A Chain A, Hi1723 Solution Structure Length = 114

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 17/113 (15%)
Query: 35  NKIHCIIFISSQAGLK--VGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92
           NK+  +I       LK  V +   GC+G  Y   +    EK+++  +             
Sbjct: 17  NKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTF---DEKVNDGDLT------------ 61
Query: 93  FHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
              SGV++ ID  +   L+G  +DY E    S F  NNPN   TCGCG SFS+
Sbjct: 62  IEKSGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI 114

>pdb|1X0G|A Chain A, Crystal Structure Of Isca With The [2fe-2s] Cluster Length = 112

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 112 GTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
           G  +DY+E+ +   F F+NPN   TCGCG +F V
Sbjct: 76  GLRVDYIEDLMGGAFRFHNPNASQTCGCGMAFRV 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	8e-43
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	3e-41
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	6e-35
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	9e-29
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	2e-26
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	6e-20

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli} Length = 145

 Score =  137 bits (347), Expect = 8e-43
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 15/98 (15%)

Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
           G+++GV+Q GC G  Y L+   + +K D     D               G ++F+  +A 
Sbjct: 63  GVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHD---------------GAKLFVPLQAM 107

Query: 108 LTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
             + GTE+D+V   L+  F F+NP  +  CGCGESF V
Sbjct: 108 PFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFGV 145

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A Length = 118

 Score =  132 bits (335), Expect = 3e-41
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 15/98 (15%)

Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
           GL++GV+  GC+G++Y L +  +    D                     GV++ +D K+ 
Sbjct: 25  GLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDK---------------GVKVVVDGKSL 69

Query: 108 LTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
             L GT++D+V+  L+  F F NPN+K  CGCGESF +
Sbjct: 70  QFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKL 107

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus} Length = 112

 Score =  116 bits (293), Expect = 6e-35
 Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 15/99 (15%)

Query: 47  AGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKA 106
           A L++ VQ   C    Y L    + +  D                     G  I I  +A
Sbjct: 26  AILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQ---------------GWTIAIAAEA 70

Query: 107 QLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145
              L G  +DY+E+ +   F F+NPN   TCGCG +F V
Sbjct: 71  AELLRGLRVDYIEDLMGGAFRFHNPNASQTCGCGMAFRV 109

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae} Length = 114

 Score =  100 bits (252), Expect = 9e-29
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 23/130 (17%)

Query: 17  TGINLSDD-RTQIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMD 75
             +  +D    ++  L+   +       ++   L+V +   GC+G  Y   + +     D
Sbjct: 7   VPLTFTDAAANKVKSLISEEE-------NTDLKLRVYITGGGCSGFQYGFTFDEKVNDGD 59

Query: 76  EEVIQDVKYWALILTCFFHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKG 135
             + +                GV++ ID  +   L+G  +DY E    S F  NNPN   
Sbjct: 60  LTIEKS---------------GVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATS 104

Query: 136 TCGCGESFSV 145
           TCGCG SFS+
Sbjct: 105 TCGCGSSFSI 114

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1 Length = 124

 Score = 95.4 bits (238), Expect = 2e-26
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 23/130 (17%)

Query: 17  TGINLSDD-RTQIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMD 75
               ++D    +I  + + N             L++ V   GC+G  Y + +    E+ D
Sbjct: 8   FIFKVTDKAVEEIKKVAQENN-------IENPILRIRVVPGGCSGFQYAMGFDDTVEEGD 60

Query: 76  EEVIQDVKYWALILTCFFHVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKG 135
                D               GV++ ID  +   + G E+DYV + +   F   NPN  G
Sbjct: 61  HVFEYD---------------GVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATG 105

Query: 136 TCGCGESFSV 145
           +CGCG SFS 
Sbjct: 106 SCGCGSSFSC 115

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} Length = 125

 Score = 78.5 bits (194), Expect = 6e-20
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 17/88 (19%)

Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
            L++   +     + Y + +  D    D+  +                 GV I I     
Sbjct: 46  CLRLAAGRNPDGSIDYRMGF--DDLTEDDIRLTS--------------EGVEIVIAPDYV 89

Query: 108 LTLLGTEMDYVEN-KLSSEFVFNNPNIK 134
             L  T +DYVE       F+F NP   
Sbjct: 90  SLLDQTTLDYVELEPGQFHFIFLNPRDP 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	100.0
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	100.0
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	100.0
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	100.0
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	100.0
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	99.94
2p2e_A	128	Putative Fe-S biosynthesis protein; hypothetical p	99.81
2qgo_A	141	Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC	99.75

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A

Probab=100.00  E-value=3.4e-37  Score=224.86  Aligned_cols=106  Identities=36%  Similarity=0.730  Sum_probs=89.8

Q ss_pred             cceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceeec
Q psy10002         17 TGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHV   95 (145)
Q Consensus        17 ~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~~   95 (145)
                      |+|+|||+|+ +|+++++.+        .++.+|||+|+++||+|++|.|.+++++.++|.+++.+              
T Consensus         1 M~I~iT~~A~~~l~~ll~~~--------~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~--------------   58 (118)
T 1r94_A            1 MSITLSDSAAARVNTFLANR--------GKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDK--------------   58 (118)
T ss_dssp             CCCEECHHHHHHHHHHHHHH--------CCCSEEEEEEEECSSSCEEEEEEEESSCCTTEEEEEET--------------
T ss_pred             CceEECHHHHHHHHHHHhhC--------CCCceEEEEEECCCCCCeEEEEEEccCCCCCceEEEEC--------------
Confidence            6899999995 899999864        24688999999999999999999998788899999999              


Q ss_pred             CceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcCC
Q psy10002         96 SGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV  145 (145)
Q Consensus        96 ~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~~  145 (145)
                       |++|+||+.+++||+|++|||++++.+++|+|.|||++++||||+||++
T Consensus        59 -Gv~v~vd~~s~~~L~g~~IDy~~~~~g~gF~~~NPna~~~CgCG~SF~~  107 (118)
T 1r94_A           59 -GVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKL  107 (118)
T ss_dssp             -TEEEEEEGGGHHHHTTCEEEEEEETTEEEEEEECTTCCC----------
T ss_pred             -CEEEEEEHHHHHHhCCCEEEEEcCCCcCceEEeCCCCCCCCCCCCCcCC
Confidence             9999999999999999999999999999999999999999999999974

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}

Probab=100.00  E-value=1.1e-36  Score=230.19  Aligned_cols=108  Identities=34%  Similarity=0.697  Sum_probs=100.7

Q ss_pred             cccceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhcee
Q psy10002         15 LYTGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFF   93 (145)
Q Consensus        15 ~~~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~   93 (145)
                      .||.|+|||+|+ +|+++++.+        .++.+|||+|+++||+|++|.|.|++++.++|.+++.+            
T Consensus        37 ~~m~ItiTe~Aa~~lk~ll~~~--------~~~~~LRv~V~~gGCsG~~Y~l~l~~~~~~~D~v~e~~------------   96 (145)
T 2d2a_A           37 AWQGLTLTPAAAIHIRELVAKQ--------PGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHD------------   96 (145)
T ss_dssp             CCCCCEECHHHHHHHHHHHHHS--------TTCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEET------------
T ss_pred             ccceEEECHHHHHHHHHHHhcC--------CCCceEEEEEECCCCCCcEEEEEECcCCCCCCeEEEEC------------
Confidence            378899999995 899999874        34688999999999999999999998788899999999            


Q ss_pred             ecCceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcCC
Q psy10002         94 HVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV  145 (145)
Q Consensus        94 ~~~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~~  145 (145)
                         |++|+||+.+++||+|++|||++++.+++|+|+|||++++||||+||++
T Consensus        97 ---Gv~v~VD~~s~~~L~G~~IDy~e~l~g~gF~f~NPna~~~CGCG~SF~v  145 (145)
T 2d2a_A           97 ---GAKLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFGV  145 (145)
T ss_dssp             ---TEEEEEEGGGHHHHTTCEEEEEEETTEEEEEEECTTTCSCCCCBCEEEC
T ss_pred             ---CEEEEEeHHHHHhhCCCEEEEEcCCCcceEEEeCCCCCcccCCCCCccC
Confidence               9999999999999999999999999999999999999999999999975

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1

Probab=100.00  E-value=5.2e-37  Score=225.75  Aligned_cols=108  Identities=31%  Similarity=0.574  Sum_probs=86.9

Q ss_pred             ccceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceee
Q psy10002         16 YTGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFH   94 (145)
Q Consensus        16 ~~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~   94 (145)
                      .|+|+|||+|+ +|+++++.++       .++.+|||+|+++||+|++|.|.+++.+.++|.+++.+             
T Consensus         7 ~m~I~iT~~A~~~l~~ll~~~~-------~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~-------------   66 (124)
T 1nwb_A            7 QFIFKVTDKAVEEIKKVAQENN-------IENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYD-------------   66 (124)
T ss_dssp             CCCCEECHHHHHHHHHHHHTTT-------CSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCS-------------
T ss_pred             CceEEECHHHHHHHHHHHhhCC-------CCCceEEEEEEcCCCCCcEEEEEEccCCCCCceEEEeC-------------
Confidence            57899999995 8999998753       34779999999999999999999998777889999988             


Q ss_pred             cCceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcCC
Q psy10002         95 VSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV  145 (145)
Q Consensus        95 ~~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~~  145 (145)
                        |++|+||+.+++||+|++|||++++.+++|+|+|||++++||||+||++
T Consensus        67 --Gv~v~VD~~s~~~L~G~~IDy~~~~~g~gF~~~NPna~~~CgCG~SF~~  115 (124)
T 1nwb_A           67 --GVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFSC  115 (124)
T ss_dssp             --SSEEEECTTTGGGSTTCEEEEEEETTEEEEEEECC--------------
T ss_pred             --CEEEEEehHHHHHhCCCEEEEEcCCCcceEEEeCCCCCcCCCCCCCcCC
Confidence              9999999999999999999999999999999999999999999999974

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}

Probab=100.00  E-value=6.7e-37  Score=221.01  Aligned_cols=106  Identities=29%  Similarity=0.504  Sum_probs=93.5

Q ss_pred             ceeeCHHHH-HHHHHHhhc-cccceeccCC-CceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceee
Q psy10002         18 GINLSDDRT-QIHGLLKIN-KIHCIIFISS-QAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFH   94 (145)
Q Consensus        18 ~I~IT~~A~-~l~~~l~~~-~~~~~~~~~~-~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~   94 (145)
                      ||+|||+|+ +|+++++.+ +       .+ +.+|||+|+++||+|++|.|.+++.+.++|.+++.+             
T Consensus         1 mi~iT~~A~~~l~~ll~~~~~-------~~~~~~lRv~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~-------------   60 (112)
T 1x0g_A            1 MVELTPAAIQELERLQTHGVR-------RGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQ-------------   60 (112)
T ss_dssp             CCEECHHHHHHTCCCC-----------------CEEEEEEEBSSSSEEEEEEECSSCCTTCEEECSS-------------
T ss_pred             CeEECHHHHHHHHHHHhhccC-------CCCceEEEEEEEcCCCCCeEEEEEECcCCCCCCEEEEeC-------------
Confidence            599999995 799998764 2       23 678999999999999999999998777889999998             


Q ss_pred             cCceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcCC
Q psy10002         95 VSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV  145 (145)
Q Consensus        95 ~~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~~  145 (145)
                        |++|+||+.+++||+|++|||++++.+++|+|+|||++++||||+||++
T Consensus        61 --Gv~v~vd~~s~~~l~g~~IDy~~~~~g~gF~~~nPna~~~CgCG~SF~~  109 (112)
T 1x0g_A           61 --GWTIAIAAEAAELLRGLRVDYIEDLMGGAFRFHNPNASQTCGCGMAFRV  109 (112)
T ss_dssp             --SCCEEECGGGHHHHTTCEEEEEEETTEEEEEEECTTCSEECSSSSEEEC
T ss_pred             --CEEEEEeHHHHHHhCCCEEEEEecCCCCEEEEeCCCCCcCCCCCCcccc
Confidence              9999999999999999999999999999999999999999999999974

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}

Probab=100.00  E-value=3e-36  Score=218.02  Aligned_cols=107  Identities=30%  Similarity=0.617  Sum_probs=99.3

Q ss_pred             cceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceeec
Q psy10002         17 TGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHV   95 (145)
Q Consensus        17 ~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~~   95 (145)
                      |+|+|||+|+ +|+++++.++       .++.+|||+|+++||+|++|.|.+++.+.++|.+++.+              
T Consensus         7 ~~i~iT~~A~~~i~~l~~~~~-------~~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~--------------   65 (114)
T 2apn_A            7 VPLTFTDAAANKVKSLISEEE-------NTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKS--------------   65 (114)
T ss_dssp             CSCEECSHHHHHHHHHHHHHT-------CSSCEEEECCCCSSSSCSCCCEEECCSCCSSCEEEECS--------------
T ss_pred             CcEEECHHHHHHHHHHHHhCC-------CCCceEEEEEeCCCCCCcEEEEEECcCCCCCCcEEEEC--------------
Confidence            5699999995 8999998753       45789999999999999999999998777889999999              


Q ss_pred             CceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcCC
Q psy10002         96 SGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV  145 (145)
Q Consensus        96 ~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~~  145 (145)
                       |++|+||+.+++||+|++|||++++.+++|+|+|||++++||||+||++
T Consensus        66 -Gv~v~id~~s~~~l~g~~IDy~~~~~g~~F~~~nPna~~~CgCG~SF~~  114 (114)
T 2apn_A           66 -GVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI  114 (114)
T ss_dssp             -SSEEEECHHHHHHHTTCEEEEECSSSCCEEEEECHHHHCCCCCCCCSCC
T ss_pred             -CEEEEEehHHHHHhCCCEEEEEcCCCcceEEEeCCCCCcCCCCCCCccC
Confidence             9999999999999999999999999999999999999999999999985

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}

Probab=99.94  E-value=2.5e-26  Score=169.32  Aligned_cols=99  Identities=21%  Similarity=0.252  Sum_probs=90.3

Q ss_pred             cccceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEe--cCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhc
Q psy10002         15 LYTGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQ--QRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTC   91 (145)
Q Consensus        15 ~~~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~--~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~   91 (145)
                      ..|+|+|||+|+ +|+++++.++       .++.+|||+|+  ++|  |++|.|.|++. .++|.+++.+          
T Consensus        19 ~~m~ItiT~~Aa~~ik~ll~~~~-------~~~~~LRv~V~~~~gG--G~~Y~l~l~~~-~~~D~v~e~~----------   78 (125)
T 2k4z_A           19 SHMMFKLTPAAAEQVLKAAKQGG-------TEGMCLRLAAGRNPDG--SIDYRMGFDDL-TEDDIRLTSE----------   78 (125)
T ss_dssp             CSSCEEECHHHHHHHHHHHHHSS-------STTCEEEEEEEECTTS--CEEEEEEEECC-CSSSCEEECS----------
T ss_pred             CCCEEEECHHHHHHHHHHHhhCC-------CCCceEEEEEEecCCC--CEEEEEEecCC-CCCceEEEEC----------
Confidence            468899999995 8999998753       34689999999  888  99999999987 7889999999          


Q ss_pred             eeecCceEEEEcccchhhcCCcEEEEee-cCCCcceEEeCCCCCCCCC
Q psy10002         92 FFHVSGVRIFIDRKAQLTLLGTEMDYVE-NKLSSEFVFNNPNIKGTCG  138 (145)
Q Consensus        92 ~~~~~gi~v~ID~~s~~~L~g~~IDy~e-~~~g~gF~~~nP~~~~~Cg  138 (145)
                           |++|+||+.+++||+|++|||++ ++.+++|+|.|||+++.|.
T Consensus        79 -----Gv~v~VD~~s~~~L~G~~IDy~~~~l~g~gF~~~NPna~~~~p  121 (125)
T 2k4z_A           79 -----GVEIVIAPDYVSLLDQTTLDYVELEPGQFHFIFLNPRDPTYRP  121 (125)
T ss_dssp             -----SCEEECCTTTHHHHTTEEEEEEEEETTEEEEEEECSSSCSSCC
T ss_pred             -----CEEEEEeHHHHHhhCCCEEEEEeCCCCcCeEEECCCCCCccCC
Confidence                 99999999999999999999999 9999999999999998885

>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1

Probab=99.81  E-value=3.4e-20  Score=137.01  Aligned_cols=95  Identities=9%  Similarity=0.107  Sum_probs=83.6

Q ss_pred             cceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecC-------CCCC-ceeeEEeccCCCC----CCeEEEecch
Q psy10002         17 TGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQR-------GCNG-LSYTLNYAKDKEK----MDEEVIQDVK   83 (145)
Q Consensus        17 ~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~g-------GC~G-~~y~l~l~~~~~~----~D~vv~~~~~   83 (145)
                      |.|+|||+|+ +|+++++.+        .....||+. +++       ||+| ++|.|.+++++.+    .|.+++.+  
T Consensus         3 M~ItlT~~A~~~l~~~l~~~--------~~~l~Lr~~-dg~g~y~k~ggCsg~~~Y~l~~v~~~~~~~~~~D~~~e~~--   71 (128)
T 2p2e_A            3 LKITVTDDAAKKLQRYTDDS--------NAVLLLDFD-DGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSN--   71 (128)
T ss_dssp             CEEEECHHHHHHHHHHHTCT--------TEEEEEEEC-SSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEET--
T ss_pred             cEEEECHHHHHHHHHHHhcC--------CceEEEEEe-CCCCccccCCCCCCCCEEEEEEeccCCCCCCCCCEEEEeC--
Confidence            6799999995 899999864        224689999 555       8999 6999999988777    89999999  


Q ss_pred             hhhhhhhceeecCceEEEEcccchhhcCC-cEEEEeecC----CCcc-eEEeCCCCCC
Q psy10002         84 YWALILTCFFHVSGVRIFIDRKAQLTLLG-TEMDYVENK----LSSE-FVFNNPNIKG  135 (145)
Q Consensus        84 ~~~~~~~~~~~~~gi~v~ID~~s~~~L~g-~~IDy~e~~----~g~g-F~~~nP~~~~  135 (145)
                                   |++|+||+.++.||+| ++|||+++.    ++++ |+|.|||++.
T Consensus        72 -------------g~~v~vd~~s~~~ldgg~~iDy~~~~~~l~L~s~~f~~~NPN~~~  116 (128)
T 2p2e_A           72 -------------IGKFYYKGYSKMYMDDNMKISLNTNNSLLRLTGDNSGELMPALSI  116 (128)
T ss_dssp             -------------TSCEEECGGGGGGSCSEEEEEECSSSSCEEEEETTTEEEEEEECE
T ss_pred             -------------CEEEEECcchHHhhCCCeEEEEeCCCceEEecCCccEEECCCCee
Confidence                         9999999999999996 999999998    8999 9999999863

>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural GEN protein structure initiative; 2.04A {Lactobacillus acidophilus}

Probab=99.75  E-value=6.3e-19  Score=132.39  Aligned_cols=90  Identities=14%  Similarity=0.263  Sum_probs=69.7

Q ss_pred             cccceeeCHHHH-HHHHHHhhccccceeccCCCceE-------EEEEecCCCC-CceeeEEeccCCCCC-CeEEEecchh
Q psy10002         15 LYTGINLSDDRT-QIHGLLKINKIHCIIFISSQAGL-------KVGVQQRGCN-GLSYTLNYAKDKEKM-DEEVIQDVKY   84 (145)
Q Consensus        15 ~~~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~L-------Ri~v~~gGC~-G~~y~l~l~~~~~~~-D~vv~~~~~~   84 (145)
                      +||.|+|||+|+ +|+++++.+         ....|       |+.++++||+ |++|.|.+++++.++ |.+++.+   
T Consensus         2 ~~M~ItlTd~Aa~~ik~~l~~~---------~~l~L~~~Dgv~r~~v~gGGCSiG~~Y~l~~~~e~~~dyD~~~e~~---   69 (141)
T 2qgo_A            2 SLLNIKFTDNAVDYLKRREILD---------KILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANE---   69 (141)
T ss_dssp             --CBEEECHHHHHHHHHTTCTT---------SEEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCS---
T ss_pred             cceEEEECHHHHHHHHHHHhhc---------cceeeecCCCceEEEEeCccCCCCCEEEEEEeecCCCCCCEEEEeC---
Confidence            589999999995 899999863         36788       9999999999 999999999888888 9998887   


Q ss_pred             hhhhhhceeecCc-eEEEEcccchhhcC-CcEEEEeecCCCcceEEeCCC
Q psy10002         85 WALILTCFFHVSG-VRIFIDRKAQLTLL-GTEMDYVENKLSSEFVFNNPN  132 (145)
Q Consensus        85 ~~~~~~~~~~~~g-i~v~ID~~s~~~L~-g~~IDy~e~~~g~gF~~~nP~  132 (145)
                                  | ++|+||+.+++||+ |++|||+++    .|.+++|.
T Consensus        70 ------------gGv~v~Vd~~sl~yLd~G~~IDy~~~----~l~Lks~s  103 (141)
T 2qgo_A           70 ------------QNVKIYTSDFDKTMLGPNMVMDYNAG----SLSLSSDE  103 (141)
T ss_dssp             ------------SCCEEEECHHHHTTSCSSEEEEEETT----EEEEEETT
T ss_pred             ------------CCEEEEECchHHHHhcCCCEEeEECC----EEEEcCCC
Confidence                        6 99999999999999 999999964    67766653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d1s98a_	97	b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {	1e-13
d1nwba_	101	b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquif	2e-11

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]} Length = 97

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

 Score = 60.4 bits (146), Expect = 1e-13
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 15/88 (17%)

Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
           GL++GV+  GC+G++Y L +  +    D                 F   GV++ +D K+ 
Sbjct: 24  GLRLGVRTSGCSGMAYVLEFVDEPTPEDIV---------------FEDKGVKVVVDGKSM 68

Query: 108 LTLLGTEMDYVENKLSSEFVFNNPNIKG 135
             L GT++D+V+  L+  F F NPN+K 
Sbjct: 69  QFLDGTQLDFVKEGLNEGFKFTNPNVKD 96

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

 Score = 55.1 bits (132), Expect = 2e-11
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 15/84 (17%)

Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
            L++ V   GC+G  Y + +    E+ D                 F   GV++ ID  + 
Sbjct: 33  ILRIRVVPGGCSGFQYAMGFDDTVEEGD---------------HVFEYDGVKVVIDPFSM 77

Query: 108 LTLLGTEMDYVENKLSSEFVFNNP 131
             + G E+DYV + +   F   NP
Sbjct: 78  PYVNGAELDYVVDFMGGGFTIRNP 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d1s98a_	97	Fe-S scaffold protein IscA (YfhF) {Escherichia col	99.96
d1nwba_	101	Hypothetical protein Aq_1857 {Aquifex aeolicus [Ta	99.94
d2p2ea1	118	Putative Fe-S biosynthesis protein LSL1730 {Lactob	98.34

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.4e-29  Score=175.87  Aligned_cols=95  Identities=33%  Similarity=0.641  Sum_probs=88.5

Q ss_pred             ceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceeecC
Q psy10002         18 GINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVS   96 (145)
Q Consensus        18 ~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~~~   96 (145)
                      .|+|||+|+ +|+++++.+        .++.+|||.|+++||+|++|.|.|++.+.++|.+++.+               
T Consensus         1 ~I~iT~~A~~~i~~ll~~~--------~~~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~---------------   57 (97)
T d1s98a_           1 SITLSDSAAARVNTFLANR--------GKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDK---------------   57 (97)
T ss_dssp             CCEECHHHHHHHHHHHHTT--------CCCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEET---------------
T ss_pred             CEEECHHHHHHHHHHHHhC--------CCCcEEEEEEEcCCCCcceEEeeecccCCCCcEEEEcC---------------
Confidence            489999995 899999875        45779999999999999999999998888899999999               


Q ss_pred             ceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCC
Q psy10002         97 GVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKG  135 (145)
Q Consensus        97 gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~  135 (145)
                      |++|+||+.++.||+|++|||+++..+++|+|.|||+++
T Consensus        58 g~~i~id~~s~~~L~G~~IDy~~~~~~~gF~f~NPNak~   96 (97)
T d1s98a_          58 GVKVVVDGKSMQFLDGTQLDFVKEGLNEGFKFTNPNVKD   96 (97)
T ss_dssp             TEEEEEEGGGHHHHTTCEEEEECSSTTCEEEEECTTSCC
T ss_pred             CCEEEEeHHHHHHhCCCEEEEeecCCcCceEEECCCCCC
Confidence            999999999999999999999999999999999999986

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.94  E-value=8.6e-28  Score=168.70  Aligned_cols=94  Identities=26%  Similarity=0.451  Sum_probs=87.1

Q ss_pred             ccceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceee
Q psy10002         16 YTGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFH   94 (145)
Q Consensus        16 ~~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~   94 (145)
                      ..||+|||+|+ +|+++++.++       .++.+|||.|+++||+|++|.|.+++++.++|.+++.+             
T Consensus         7 ~~mi~iT~~A~~~i~~l~~~~~-------~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~D~v~~~~-------------   66 (101)
T d1nwba_           7 QFIFKVTDKAVEEIKKVAQENN-------IENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYD-------------   66 (101)
T ss_dssp             CCCCEECHHHHHHHHHHHHTTT-------CSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCS-------------
T ss_pred             CCcEEECHHHHHHHHHHHHhcC-------CCCceEEEEEeCCCCCceeEEEeeccccccCceEEecC-------------
Confidence            45799999995 8999998753       56789999999999999999999998888899999888             


Q ss_pred             cCceEEEEcccchhhcCCcEEEEeecCCCcceEEeCC
Q psy10002         95 VSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNP  131 (145)
Q Consensus        95 ~~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP  131 (145)
                        |++|+||+.++.||.|++|||+++..+++|+|.||
T Consensus        67 --g~~i~id~~s~~~L~G~~IDy~~~~~~~~F~f~NP  101 (101)
T d1nwba_          67 --GVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNP  101 (101)
T ss_dssp             --SSEEEECTTTGGGSTTCEEEEEEETTEEEEEEECC
T ss_pred             --CeeEEECHHHHhHhCCCEEEEeecCCCCeEEEeCc
Confidence              99999999999999999999999999999999999

>d2p2ea1 b.124.1.1 (A:3-120) Putative Fe-S biosynthesis protein LSL1730 {Lactobacillus salivarius [TaxId: 1624]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Putative Fe-S biosynthesis protein LSL1730
species: Lactobacillus salivarius [TaxId: 1624]

Probab=98.34  E-value=1.2e-06  Score=61.95  Aligned_cols=89  Identities=13%  Similarity=0.204  Sum_probs=63.5

Q ss_pred             cceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEE--------ecCCCC-CceeeEEeccC----CCCCCeEEEecc
Q psy10002         17 TGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGV--------QQRGCN-GLSYTLNYAKD----KEKMDEEVIQDV   82 (145)
Q Consensus        17 ~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v--------~~gGC~-G~~y~l~l~~~----~~~~D~vv~~~~   82 (145)
                      |.|+|||+|+ +|++.+..          ....|.+..        +++||+ |-.|.+.+.++    ..+-|+.++.+ 
T Consensus         1 M~ItiT~~A~~~L~~~~~~----------~~~~L~L~~dDG~g~yS~gggC~i~g~f~L~~v~~~~~~~~~yd~~iesn-   69 (118)
T d2p2ea1           1 LKITVTDDAAKKLQRYTDD----------SNAVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSN-   69 (118)
T ss_dssp             CEEEECHHHHHHHHHHHTC----------TTEEEEEEECSSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEET-
T ss_pred             CEEEECHHHHHHHHHhhCC----------CCCEEEEEEeCCCCccccCCccccCCEEEEEEEeCCCCCCcccceeecCC-
Confidence            6799999995 79998864          234455554        467887 55788887653    12456777777 


Q ss_pred             hhhhhhhhceeecCceEEEEcccchhhcC-CcEEEEeecCCCcceEEeCCC
Q psy10002         83 KYWALILTCFFHVSGVRIFIDRKAQLTLL-GTEMDYVENKLSSEFVFNNPN  132 (145)
Q Consensus        83 ~~~~~~~~~~~~~~gi~v~ID~~s~~~L~-g~~IDy~e~~~g~gF~~~nP~  132 (145)
                                    -.+|++.+....||+ +++|||.+.  ..-|+++.|+
T Consensus        70 --------------~g~i~~~~~~~~ffd~~m~ld~~~~--~~~l~LkSd~  104 (118)
T d2p2ea1          70 --------------IGKFYYKGYSKMYMDDNMKISLNTN--NSLLRLTGDN  104 (118)
T ss_dssp             --------------TSCEEECGGGGGGSCSEEEEEECSS--SSCEEEEETT
T ss_pred             --------------CccEEEcccchhhcCCCcEEEEcCC--CCEEEEeCCC
Confidence                          449999999999998 589999865  3446665553