Psyllid ID: psy10399

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
Protein Sequence
MKRRKEWDSLSARQKRTDGASGNSVVEGDFAVGTSPNVSPPNNLKAELTKWTLESRISKNHVSSLLRSLRPYHPQLPQDYRTLLGTPTLVDSIEEMNPVSAVCSRYPRIKHFICDTPAKGYLLNIKGHTGFSFIVAHAAKLRDSTVKMQEHFIFQILQLQGYLLNIKGHTGFNFIVAHAAKLRDSTKDDDQFHRGPTPLQHLFGFNIIKNVPLDYMHLVCLGIMKKLLVLWQRPKMNHLLPAFKIDAMSDRLLEMKKFTNNDKMQLNQHTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKSIKPNIEKWPSSNRKTRLEEVVLTRMRIGHTRLTHSYLFSRSPQPTCRCPEFIVQKIDTTELTSETQISLKWNREVLVLAGSHANGTNKKLSSLVC
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEcccccccccEEEEEEccccccccHHHHHccccHHHHHHHHcccccccccccEEEEEEcccccHHHHHHccccccccccccccccccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEcccccHHHHHHHHccHHHHHHHccccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHcccHHHHHHHHHHcccccccccEEEEEEEEEccccHHHHHHcccccccccEEcccEEEcccEEEEEEEEEEcEEEcccccccccccccccEEEcccHHccccccccHHcccccccHHcccccccEccccHHHHHHHHHHHHHHHHHHHHccccccEccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccccccccccccccEEEEEEEEcccccHcHHHHHcccccccccccEEEEEEEEcccccccEEEEEcccHHHHHHHcccccccccHHHHccc
Coil and Loop (DISEMBL)
mkrrkewdslsarqkrtdgasgnsvvegdfavgtspnvsppnnlkaELTKWTLESRISKNHVSSLLRslrpyhpqlpqdyrtllgtptlvdsieemnpvsavcsryprikhficdtpakgyllnikgHTGFSFIVAHAAKLRDSTVKMQEHFIFQILQLQGYLLNIKGHTGFNFIVAHAAklrdstkdddqfhrgptplqhlfgfniiknvpldYMHLVCLGIMKKLLVLwqrpkmnhllpafkIDAMSDRLLEMKkftnndkmqlnqHTWLDLVACgkeisfmwcpshcgisgneavdvaaknpspsfpplklcsasdykpLIKKIVQRNWqsswnsvpngnklksikpniekwpssnrktrLEEVVLTRMRightrlthsylfsrspqptcrcpefivqkidtteltsetqISLKWNREVLVLAGshangtnkklsslvc
Flexible Loop (DISEMBL)
mkrrkewdslsarqkrtdgasgnsvVEGDFAvgtspnvsppnnLKAELTKWTLESRISKNHVSSLLRSLRPYHPQLPQDYRTLLGTPTLVDSIEEMNPVSAVCSRYPRIKHFICDTPAKGYLLNIKGHTGFSFIVAHAAKLRDSTVKMQEHFIFQILQLQGYLLNIKGHTGFNFIVAHAAKLRDSTKDDDQFHRGPTPLQHLFGFNIIKNVPLDYMHLVCLGIMKKLLVLWQRPKMNHLLPAFKIDAMSDRLLEMKKFTNNDKMQLNQHTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRnwqsswnsvpngnklksikpniekwpssnrktrleeVVLTRmrightrlthsylfsrspqptcRCPEFIVQKIDtteltsetqislKWNREVLVLagshangtnkklsslvc
Low Complexity Region (SEG)
MKRRKEWDSLSARQKRTDGASGNSVVEGDFAVGTSPNVSPPNNLKAELTKWTLESRISKNHVSSLLRSLRPYHPQLPQDYRTLLGTPTLVDSIEEMNPVSAVCSRYPRIKHFICDTPAKGYLLNIKGHTGFSFIVAHAAKLRDSTVKMQEHFIFQILQLQGYLLNIKGHTGFNFIVAHAAKLRDSTKDDDQFHRGPTPLQHLFGFNIIKNVPLDYMHLVCLGIMKKLLVLWQRPKMNHLLPAFKIDAMSDRLLEMKKFTNNDKMQLNQHTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKSIKPNIEKWPSSNRKTRLEEVVLTRMRIGHTRLTHSYLFSRSPQPTCRCPEFIVQKIDTTELTSETQISLKWNREVLVLAGSHANGTNKKLSSLVC
Disordered region (IsUnstruct)
*************************************************KWTLE*******VSSLLRSLRPYHPQLPQDYRTLLGTPTLVDSIEEMNPVSAVCSRYPRIKHFICDTPAKGYLLNIKGHTGFSFIVAHAAKLRDSTVKMQEHFIFQILQLQGYLLNIKGHTGFNFIVAHAAKLR***********GPTPLQHLFGFNIIKNVPLDYMHLVCLGIMKKLLVLWQRPKMNHLLPAFKIDAMSDRLLEMKKFTNNDKMQLNQHTWLDLVACGKEISFMWCPSHCGISGNEAVDVA**********LKLCSASDYKPLIKKIVQRNWQSSWNS*************************LEEVVLTRMRIGHTRLTHSYLFSRSPQPTCRCPEFIVQKIDTTELTSETQISLKWNREVLVLAG***************
Disordered Region (DISOPRED)
***********AR***********VVEGDFAVGTSPNVSPPNNLKAELTKWTLESRISKNHVSSLLRSLRPYHPQLPQDYRTLLGTPTLVDSIEEMNPVSAVCSRYPRIKHFICDTPAKGYLLNIKGHTGFSFIVAHAAKLRDSTVKMQEHFIFQILQLQGYLLNIKGHTGFNFIVAHAAKLRDSTKDDDQFHRGPTPLQHLFGFNIIKNVPLDYMHLVCLGIMKKLLVLWQRPKMNHLLPAFKIDAMSDRLLEMKKFTNNDKMQLNQHTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKSIKPNIEKWPSSNRKTRLEEVVLTRMRIGHTRLTHSYLFSRSPQPTCRCPEFIVQKIDTTELTSETQISLK**********SHANGTNKKLSSLVC
Disordered Region (DISEMBL)
**********************NSVVEGDFAVGTSPNVSPPNNLKAELTKWTLESRISKNHVSSLLRSLRPYHPQLPQDYRTLLGTPTLVDSIEEMNPVSAVCSRYPRIKHFICDTPAKGYLLNIKGHTGFSFIVAHAAKLRDSTVKMQEHFIFQILQLQGYLLNIKGHTGFNFIVAHAAKLR********FHRGPTPLQHLFGFNIIKNVPLDYMHLVCLGIMKKLLVLWQRPKMNHLLPAFKIDAMSDRLLEMKKFTNNDKMQLNQHTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKSIKPNIEKWPSSNRKTRLEEVVLTRMRIGHTRLTHSYLFSRSPQPTCRCPEFIVQKIDTTELTSETQISLKWNREVLVLAGSHANGTNKKLSSLVC
Disordered Region (DISPRO)
***********************************P**SPPNNLKAELTKWTLESRISKNHVSSLLRSLRPYHPQLPQDYRTLLGTPTLVDSIEEMNPVSAVCSRYPRIKHFICDTPAKGYLLNIKGHTGFSFIVAHAAKLRDSTVKMQEHFIFQILQLQGYLLNIKGHTGFNFIVAHAAKLRDSTKDDDQFHRGPTPLQHLFGFNIIKNVPLDYMHLVCLGIMKKLLVLWQRPKMNHLLPAFKIDAMSDRLLEMKKFTNNDKMQLNQHTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKSIKPNIEKWPSSNRKTRLEEVVLTRMRIGHTRLTHSYLFSRSPQPTCRCPEFIVQKIDTTELTSETQISLKWNREVLVLAGSHA****K*L****C
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKRRKEWDSLSARQKRTDGASGNSVVEGDFAVGTSPNVSPPNNLKAELTKWTLESRISKNHVSSLLRSLRPYHPQLPQDYRTLLGTPTLVDSIEEMNPVSAVCSRYPRIKHFICDTPAKGYLLNIKGHTGFSFIVAHAAKLRDSTVKMQEHFIFQILQLQGYLLNIKGHTGFNFIVAHAAKLRDSTKDDDQFHRGPTPLQHLFGFNIIKNVPLDYMHLVCLGIMKKLLVLWQRPKMNHLLPAFKIDAMSDRLLEMKKFTNNDKMQLNQHTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKSIKPNIEKWPSSNRKTRLEEVVLTRMRIGHTRLTHSYLFSRSPQPTCRCPEFIVQKIDTTELTSETQISLKWNREVLVLAGSHANGTNKKLSSLVC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
443694523	364	hypothetical protein CAPTEDRAFT_227708 [	0.244	0.296	0.425	1e-19
443721618	471	hypothetical protein CAPTEDRAFT_200496,	0.278	0.261	0.457	6e-19
443733872	400	hypothetical protein CAPTEDRAFT_197082 [	0.257	0.285	0.427	8e-19
328706409	1275	PREDICTED: hypothetical protein LOC10057	0.466	0.161	0.291	9e-19
443682433	619	hypothetical protein CAPTEDRAFT_222606 [	0.257	0.184	0.426	1e-18
443694031	574	hypothetical protein CAPTEDRAFT_227918 [	0.246	0.189	0.446	2e-18
443693558	502	hypothetical protein CAPTEDRAFT_189741,	0.269	0.237	0.442	1e-17
443695973	261	hypothetical protein CAPTEDRAFT_23017, p	0.269	0.455	0.442	2e-17
443712830	397	hypothetical protein CAPTEDRAFT_202466 [	0.269	0.299	0.426	2e-16
443730613	233	hypothetical protein CAPTEDRAFT_206814 [	0.264	0.502	0.406	2e-16

>gi|443694523|gb|ELT95634.1| hypothetical protein CAPTEDRAFT_227708 [Capitella teleta]

 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 69/127 (54%), Gaps = 19/127 (14%)

Query: 274 LVACGKEISFMWCPSHCGISGNEAVDVAAKN---------PSPSFPPLKLCSASDYKPLI 324
           L    K I F+WCPSH GI GNE  D  AK          P P          +D+KP+ 
Sbjct: 59  LAGRDKRIIFIWCPSHVGIPGNETADTLAKQALGMNILNCPIPH---------TDFKPIT 109

Query: 325 KKIVQRNWQSSWNSVPNGNKLKSIKPNIEKWPSSNRKTRLEEVVLTRMRIGHTRLTHSYL 384
           +  V+  WQS W+    GNKL  I+P+I  WP   R+ R EE+V+ R+RIGHT LTHS+L
Sbjct: 110 RSFVKTQWQSEWDQ-ETGNKLHDIQPDIGSWPPCQREKRREEIVIARVRIGHTFLTHSHL 168

Query: 385 FSRSPQP 391
            S +  P
Sbjct: 169 LSGNDAP 175

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443721618|gb|ELU10867.1| hypothetical protein CAPTEDRAFT_200496, partial [Capitella teleta]

 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/129 (45%), Positives = 70/129 (54%), Gaps = 6/129 (4%)

Query: 279 KEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKL-CSASDYKPLIKKIVQRNWQSSWN 337
           K + FMWCPSH GI GNE  D  AK    S    +L   ASD + LIKK ++  WQ  W+
Sbjct: 117 KIVVFMWCPSHVGIPGNEMADTLAKEALSSTNLAELPVPASDLRCLIKKYIRSRWQHEWD 176

Query: 338 SVPNGNKLKSIKPNIEKWPSSNRKTRLEEVVLTRMRIGHTRLTHSYLFSRSPQP---TCR 394
              + NKL SI P I  WP   R+ R EE+VL R+RIGHT  TH Y+     Q     C 
Sbjct: 177 E-QHSNKLHSIHPTIGPWPPCQREKRREEIVLARIRIGHTHYTHDYIPRGDDQTECVACV 235

Query: 395 CPEFIVQKI 403
           CP   VQ I
Sbjct: 236 CP-LTVQHI 243

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443733872|gb|ELU18078.1| hypothetical protein CAPTEDRAFT_197082 [Capitella teleta]

 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 68/117 (58%), Gaps = 3/117 (2%)

Query: 278 GKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKL-CSASDYKPLIKKIVQRNWQSSW 336
           G ++   WCPSH G+ GNE  D+ AK  + SF    +   +SD+KP+  +  +  WQ  W
Sbjct: 98  GIDLVMTWCPSHVGVMGNERADLLAKE-ALSFTTCTIRIPSSDFKPITHEFYKEKWQEQW 156

Query: 337 NSVPNGNKLKSIKPNIEKWPSSNRKTRLEEVVLTRMRIGHTRLTHSYLFSRSPQPTC 393
           +S    NKL  I+P + KW  S+R+ R EE+VL R RIGH+ LTH YL  R   P C
Sbjct: 157 SS-EQENKLYCIQPTLGKWAKSSREIRREEIVLARARIGHSHLTHGYLLRREMPPVC 212

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|328706409|ref|XP_003243087.1| PREDICTED: hypothetical protein LOC100575512 [Acyrthosiphon pisum]

 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 41/247 (16%)

Query: 44  LKAELTKWTLESRISKNHVSSLLRSLRPYHPQL---PQDYRTLLG-------TPTLVDSI 93
           L+ E+  W + + IS   ++ LL++L+ + PQL   P+D R+  G          L D +
Sbjct: 99  LELEIALWAIRNNISHLALNDLLKNLKKF-PQLNHLPKDARSYFGKMKPENSNEFLQDFV 157

Query: 94  EEMNPVSAVCSRYPR------IKHFICDTPAKGYLLNIKGHTG-FSFIVAHAAKLRDSTV 146
            E++ +      +        +K  ICDTPAK Y+LN+KGHTG  S ++ H   + D   
Sbjct: 158 NELSSLVKDGFVFENKLIKVLLKGLICDTPAKSYILNVKGHTGKNSCLICHTVGIYDKN- 216

Query: 147 KMQEHFIFQILQLQGYLLNIKGHTGFNFIVAHAAKLRDSTKDDDQFHRGPTPLQHLFGFN 206
                  +  +        I+ H  F             + +D +FHRG T    +  FN
Sbjct: 217 -------YHRVYFPELYSPIRTHDAF------------ISYEDTEFHRGETFFTMIPKFN 257

Query: 207 IIKNVPLDYMHLVCLGIMKKLLVLWQRPKMNH--LLPAFKIDAMSDRLLEMKKFTNND-K 263
           II ++P DYMH VC+G+MKKLL+ W      H   LP   +  ++ R+ ++ +F   D +
Sbjct: 258 IINDIPFDYMHCVCIGVMKKLLMFWNGNFKFHSQALPNNLLSVLNKRINDLSQFITEDFQ 317

Query: 264 MQLNQHT 270
             LN+++
Sbjct: 318 RNLNENS 324

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443682433|gb|ELT87030.1| hypothetical protein CAPTEDRAFT_222606 [Capitella teleta]

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 1/115 (0%)

Query: 279 KEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 338
           K I F+WCPSH GI GNE  D  A+  S           +D+KP+ +  V+  WQS  + 
Sbjct: 92  KRIIFIWCPSHVGIPGNETADTLAQQASGMNILNCPIPHTDFKPITRSFVETQWQSESDQ 151

Query: 339 VPNGNKLKSIKPNIEKWPSSNRKTRLEEVVLTRMRIGHTRLTHSYLFSRSPQPTC 393
              GNKL  I+P+I  WP   R+ R +E+V+ R+RIGHT LT+S+L S +  P C
Sbjct: 152 -ETGNKLHDIEPDIGSWPPCQREKRRDEIVIARLRIGHTFLTYSHLLSGNDAPMC 205

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443694031|gb|ELT95266.1| hypothetical protein CAPTEDRAFT_227918 [Capitella teleta]

 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 66/112 (58%), Gaps = 3/112 (2%)

Query: 283 FMWCPSHCGISGNEAVDVAAKNPSPSFPPLKL-CSASDYKPLIKKIVQRNWQSSWNSVPN 341
             WCPSH G+ GNE  D+ AK  + SF    +   +SD+KP+  +  +  WQ  W+S   
Sbjct: 1   MAWCPSHVGVMGNERADLLAKE-ALSFTTCTIRIPSSDFKPITHEFFKEKWQEQWSS-EQ 58

Query: 342 GNKLKSIKPNIEKWPSSNRKTRLEEVVLTRMRIGHTRLTHSYLFSRSPQPTC 393
            NKL SI+P + KW  S+R+ R EE+VL R RIGH+ LTH YL  R   P C
Sbjct: 59  ENKLYSIQPTLGKWAKSSREIRREEIVLARARIGHSHLTHGYLVRREMPPVC 110

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443693558|gb|ELT94903.1| hypothetical protein CAPTEDRAFT_189741, partial [Capitella teleta]

 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 273 DLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKL-CSASDYKPLIKKIVQRN 331
           +LV  GK + F+WCPSH GI GNE  D  AK  +   P  KL    +DYK  I+  V+  
Sbjct: 172 NLVRKGKLVVFIWCPSHVGILGNEVADRLAKQ-ALVMPVTKLPLPHTDYKSPIRSYVKSL 230

Query: 332 WQSSWNSVPNGNKLKSIKPNIEKWPSSNRKTRLEEVVLTRMRIGHTRLTHSYLFSRSPQP 391
           WQ+ W+     NKL SI+P I +W    +  R  E+VL R RIGH+ LTH YL  R   P
Sbjct: 231 WQNEWDE-ETDNKLHSIQPVISEWKQGPQIDRRGEIVLARARIGHSHLTHGYLLRREVAP 289

Query: 392 TC 393
            C
Sbjct: 290 FC 291

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443695973|gb|ELT96755.1| hypothetical protein CAPTEDRAFT_23017, partial [Capitella teleta]

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 68/122 (55%), Gaps = 3/122 (2%)

Query: 273 DLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKL-CSASDYKPLIKKIVQRN 331
           +LV  GK + F+WCPSH GI GNE  D  AK  +   P  KL    +DYK  I+  V+  
Sbjct: 126 NLVRKGKLVVFIWCPSHVGILGNEVADRLAKQ-ALVMPVTKLPLPHTDYKSPIRSYVKSL 184

Query: 332 WQSSWNSVPNGNKLKSIKPNIEKWPSSNRKTRLEEVVLTRMRIGHTRLTHSYLFSRSPQP 391
           WQ+ W+     NKL SI+P I +W    +  R  E+VL R RIGH+ LTH YL  R   P
Sbjct: 185 WQNEWDE-ETDNKLHSIQPVISEWKQGPQIDRRGEIVLARARIGHSHLTHGYLLRREVAP 243

Query: 392 TC 393
            C
Sbjct: 244 FC 245

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443712830|gb|ELU05953.1| hypothetical protein CAPTEDRAFT_202466 [Capitella teleta]

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 273 DLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKL-CSASDYKPLIKKIVQRN 331
           +LV  GK++ F+WCPSH GI GNE  D  AK  +   P  KL    +DYK  I+  V+  
Sbjct: 221 NLVRKGKKVVFIWCPSHVGILGNEVADRQAKQ-ALVMPVTKLPLPHTDYKSPIRSYVKSL 279

Query: 332 WQSSWNSVPNGNKLKSIKPNIEKWPSSNRKTRLEEVVLTRMRIGHTRLTHSYLFSRSPQP 391
           WQ+ W+     NKL  I+P I +W    +  R  E+VL   RIGH+ LTH YL  R   P
Sbjct: 280 WQNEWDG-ETDNKLHIIQPVISEWKQGPQIDRRGEIVLACARIGHSHLTHGYLLRREVAP 338

Query: 392 TC 393
            C
Sbjct: 339 FC 340

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443730613|gb|ELU16038.1| hypothetical protein CAPTEDRAFT_206814 [Capitella teleta]

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 71/123 (57%), Gaps = 6/123 (4%)

Query: 278 GKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKL-CSASDYKPLIKKIVQRNWQSSW 336
           G ++  +WCPSH G+ GNE  D+ AK  + SF    +   A D+  +     +  WQ+ W
Sbjct: 78  GFDLVILWCPSHIGVVGNERADLLAKE-ALSFTACDVRIPAFDFNSVAYSFYRDKWQALW 136

Query: 337 NSVPNGNKLKSIKPNIEKWPSSNRKTRLEEVVLTRMRIGHTRLTHSYLFSRSPQPT---C 393
            S+   NKL S++P I+K  +S+R+ R +E+VL R RIGHT LTH YL  R   P    C
Sbjct: 137 -SLEQNNKLHSVQPIIKKLTNSSREDRRKEIVLARARIGHTHLTHGYLLRRELPPFCVHC 195

Query: 394 RCP 396
           +CP
Sbjct: 196 QCP 198

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	442
cd09276	128	cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI dom	1e-08
pfam00075	126	pfam00075, RNase_H, RNase H	3e-05

>gnl|CDD|187700 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI domain of reverse transcriptases

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 269 HTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK 303
               +L   G ++   W P H GI GNE  D  AK
Sbjct: 90  KAIRELANHGVKVRLHWVPGHSGIEGNERADRLAK 124

Ribonuclease H (RNase H) is classified into two families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). Ribonuclease HI (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes. RNase HI has also been observed as an adjunct domain to the reverse transcriptase gene in retroviruses, long-term repeat (LTR)-bearing retrotransposons and non-LTR retrotransposons. RNase HI in LTR retrotransposons perform degradation of the original RNA template, generation of a polypurine tract (the primer for plus-strand DNA synthesis), and final removal of RNA primers from newly synthesized minus and plus strands. The catalytic residues for RNase H enzymatic activity, three aspartatic acids and one glutamatic acid residue (DEDD), are unvaried across all RNase H domains. The position of the RNase domain of non-LTR and LTR transposons is at the carboxyl terminal of the reverse transcriptase (RT) domain and their RNase domains group together, indicating a common evolutionary origin. Many non-LTR transposons have lost the RNase domain because their activity is at the nucleus and cellular RNase may suffice; however LTR retotransposons always encode their own RNase domain because it requires RNase activity in RNA-protein particles in the cytoplasm. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription. Length = 128

>gnl|CDD|215695 pfam00075, RNase_H, RNase H

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 274 LVACGKEISFMWCPSHCGISGNEAVDVAAK 303
           L+    ++   W P H GI GNE  D  AK
Sbjct: 93  LLQKKHKVYIQWVPGHSGIPGNELADKLAK 122

RNase H digests the RNA strand of an RNA/DNA hybrid. Important enzyme in retroviral replication cycle, and often found as a domain associated with reverse transcriptases. Structure is a mixed alpha+beta fold with three a/b/a layers. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	442
PF00075	132	RNase_H: RNase H; InterPro: IPR002156 The RNase H	98.2
PRK08719	147	ribonuclease H; Reviewed	98.16
PRK00203	150	rnhA ribonuclease H; Reviewed	97.99
PRK06548	161	ribonuclease H; Provisional	97.87
COG0328	154	RnhA Ribonuclease HI [DNA replication, recombinati	97.59
cd06222	130	RnaseH RNase H (RNase HI) is an endonuclease that	97.39
KOG3752|consensus	371		96.86
PF02992	226	Transposase_21: Transposase family tnp2; InterPro:	94.16
PF13966	86	zf-RVT: zinc-binding in reverse transcriptase	88.69
PRK13907	128	rnhA ribonuclease H; Provisional	82.92

>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site

Probab=98.20  E-value=3.1e-07  Score=79.93  Aligned_cols=31  Identities=39%  Similarity=0.795  Sum_probs=28.5

Q ss_pred             hccceeEEEeccCCCCC-CCChHHHHHhcCCC
Q psy10399        276 ACGKEISFMWCPSHCGI-SGNEAVDVAAKNPS  306 (442)
Q Consensus       276 ~~~~~I~l~WIPgH~gI-~GNE~AD~lAK~A~  306 (442)
                      ..+..|.|.|||||+|+ .|||.||++||+|+
T Consensus       100 ~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~a~  131 (132)
T PF00075_consen  100 SRGIKVRFRWVPGHSGVPQGNERADRLAKEAA  131 (132)
T ss_dssp             HHSSEEEEEESSSSSSSHHHHHHHHHHHHHHH
T ss_pred             ccceEEeeeeccCcCCCchhHHHHHHHHHHhc
Confidence            66899999999999999 69999999999764

This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....

>PRK08719 ribonuclease H; Reviewed

Probab=98.16  E-value=8.3e-07  Score=80.39  Aligned_cols=30  Identities=33%  Similarity=0.463  Sum_probs=27.2

Q ss_pred             cceeEEEeccCCCCCCCChHHHHHhcCCCC
Q psy10399        278 GKEISFMWCPSHCGISGNEAVDVAAKNPSP  307 (442)
Q Consensus       278 ~~~I~l~WIPgH~gI~GNE~AD~lAK~A~~  307 (442)
                      ...|+|.|||||+|++|||.||++|++|+.
T Consensus       117 ~~~i~~~~VkgH~g~~~Ne~aD~lA~~a~~  146 (147)
T PRK08719        117 RKYVEVEKVTAHSGIEGNEAADMLAQAAAE  146 (147)
T ss_pred             CCcEEEEEecCCCCChhHHHHHHHHHHHhh
Confidence            356999999999999999999999999863

>PRK00203 rnhA ribonuclease H; Reviewed

Probab=97.99  E-value=1.5e-06  Score=78.56  Aligned_cols=31  Identities=26%  Similarity=0.481  Sum_probs=27.9

Q ss_pred             cceeEEEeccCCCCCCCChHHHHHhcCCCCC
Q psy10399        278 GKEISFMWCPSHCGISGNEAVDVAAKNPSPS  308 (442)
Q Consensus       278 ~~~I~l~WIPgH~gI~GNE~AD~lAK~A~~~  308 (442)
                      ...|.|.|||||+|++|||.||++||+|...
T Consensus       112 ~~~v~~~wV~~H~~~~~N~~AD~lA~~a~~~  142 (150)
T PRK00203        112 RHQIKWHWVKGHAGHPENERCDELARAGAEE  142 (150)
T ss_pred             cCceEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            3679999999999999999999999988654

>PRK06548 ribonuclease H; Provisional

Probab=97.87  E-value=3.9e-06  Score=77.21  Aligned_cols=29  Identities=31%  Similarity=0.536  Sum_probs=26.4

Q ss_pred             ceeEEEeccCCCCCCCChHHHHHhcCCCC
Q psy10399        279 KEISFMWCPSHCGISGNEAVDVAAKNPSP  307 (442)
Q Consensus       279 ~~I~l~WIPgH~gI~GNE~AD~lAK~A~~  307 (442)
                      ..|+|.|||||+|++|||.||++|++|+.
T Consensus       113 ~~v~~~wVkgHsg~~gNe~aD~LA~~aa~  141 (161)
T PRK06548        113 RNIRMSWVNAHTGHPLNEAADSLARQAAN  141 (161)
T ss_pred             CceEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            36999999999999999999999998763

>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]

Probab=97.59  E-value=2.3e-05  Score=71.44  Aligned_cols=33  Identities=21%  Similarity=0.385  Sum_probs=28.3

Q ss_pred             hhccceeEEEeccCCCCCCCChHHHHHhcCCCC
Q psy10399        275 VACGKEISFMWCPSHCGISGNEAVDVAAKNPSP  307 (442)
Q Consensus       275 ~~~~~~I~l~WIPgH~gI~GNE~AD~lAK~A~~  307 (442)
                      ..+-..|.+.|||||+|.++||+||++|++|+.
T Consensus       112 ~~~~~~v~~~WVkgH~g~~~NeraD~LA~~~~~  144 (154)
T COG0328         112 LKRHELVFWEWVKGHAGHPENERADQLAREAAR  144 (154)
T ss_pred             HhhCCeEEEEEeeCCCCChHHHHHHHHHHHHHH
Confidence            444447999999999999999999999998754

>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner

Probab=97.39  E-value=0.00011  Score=61.23  Aligned_cols=31  Identities=39%  Similarity=0.717  Sum_probs=28.3

Q ss_pred             hhccceeEEEeccCCCCCCCChHHHHHhcCC
Q psy10399        275 VACGKEISFMWCPSHCGISGNEAVDVAAKNP  305 (442)
Q Consensus       275 ~~~~~~I~l~WIPgH~gI~GNE~AD~lAK~A  305 (442)
                      ...+..++|.|||+|+|+++|+.||.+||+|
T Consensus        99 ~~~~~~~~i~~v~~h~~~~~n~~ad~la~~~  129 (130)
T cd06222          99 LKRFHKVRFEWVPGHSGIEGNERADALAKEA  129 (130)
T ss_pred             HhCCCeEEEEEcCCCCCCcchHHHHHHHHhh
Confidence            3567889999999999999999999999986

One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.

>KOG3752|consensus

Probab=96.86  E-value=0.00061  Score=69.65  Aligned_cols=31  Identities=32%  Similarity=0.482  Sum_probs=28.3

Q ss_pred             ccceeEEEeccCCCCCCCChHHHHHhcCCCC
Q psy10399        277 CGKEISFMWCPSHCGISGNEAVDVAAKNPSP  307 (442)
Q Consensus       277 ~~~~I~l~WIPgH~gI~GNE~AD~lAK~A~~  307 (442)
                      ++..|++.|||||.||.|||.||.+|++++.
T Consensus       334 ~~~~vq~~~V~Gh~gi~gne~Ad~lARkgs~  364 (371)
T KOG3752|consen  334 SNKKVQQEYVGGHSGILGNEMADALARKGST  364 (371)
T ss_pred             ccCceEEEEecCcCCcchHHHHHHHHhhhhh
Confidence            4799999999999999999999999998753

>PF02992 Transposase_21: Transposase family tnp2; InterPro: IPR004242 This family includes a En/Spm-like transposable element, Tdc1 from carrot []

Probab=94.16  E-value=0.024  Score=54.96  Aligned_cols=49  Identities=20%  Similarity=0.026  Sum_probs=38.3

Q ss_pred             ecceeeEEEcCCccchhhhhccCCcccchhhhhhhhhccccccchhhhhhhhhcccceE--ecccceeEeCc
Q psy10399        105 RYPRIKHFICDTPAKGYLLNIKGHTGFSFIVAHAAKLRDSTVKMQEHFIFQILQLQGYL--LNIKGHTGFNF  174 (442)
Q Consensus       105 ~~~~i~~~~~D~pak~~~~~~k~~~g~~~c~~~~~~~~~~~~~C~~~~~~~~~~~~G~~--~~~~~~~~f~~  174 (442)
                      +++.+..+|||.||++.+.+.++| |+++|.           .|.         ..+.+  +.++.+++|..
T Consensus       132 ~ra~l~~~i~D~PA~~~l~G~~~~-G~~~C~-----------~C~---------~~t~~~~L~~~~K~~y~~  182 (226)
T PF02992_consen  132 LRAALLCTIADYPARRKLSGFSGH-GKYGCP-----------FCM---------DKTESFYLKHGRKTVYMG  182 (226)
T ss_pred             EeeeeEEEEecchhccchhhcccc-cCccCC-----------CCc---------chhhhccccccccccccc
Confidence            367777899999999999999875 788999           999         66655  33445677766

The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].

>PF13966 zf-RVT: zinc-binding in reverse transcriptase

Probab=88.69  E-value=0.27  Score=40.09  Aligned_cols=38  Identities=26%  Similarity=0.260  Sum_probs=26.2

Q ss_pred             hhcccccc-cc--ccccCCCCCCCCc-CC---CCccc-cccCcCcc
Q psy10399        372 MRIGHTRL-TH--SYLFSRSPQPTCR-CP---EFIVQ-KIDTTELT  409 (442)
Q Consensus       372 LRTGH~~l-~h--~~r~~~~dsp~C~-CG---et~~H-L~~Cp~~~  409 (442)
                      -|.-|.++ +-  +.+.+...++.|. ||   ||++| |++||...
T Consensus        38 W~~~~~rL~t~~~l~~r~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~   83 (86)
T PF13966_consen   38 WRALHNRLPTKDNLQRRGIQVDPICPLCGNEEETIEHLFFHCPFAR   83 (86)
T ss_pred             eeeccccchhhhhhhccCCccCCccccCCCccccccceeccCcCcc
Confidence            44555565 21  3344556789999 98   39999 99999754

>PRK13907 rnhA ribonuclease H; Provisional

Probab=82.92  E-value=0.64  Score=40.38  Aligned_cols=28  Identities=25%  Similarity=0.339  Sum_probs=22.3

Q ss_pred             hhccceeEEEeccCCCCCCCChHHHHHhcCCC
Q psy10399        275 VACGKEISFMWCPSHCGISGNEAVDVAAKNPS  306 (442)
Q Consensus       275 ~~~~~~I~l~WIPgH~gI~GNE~AD~lAK~A~  306 (442)
                      ..+-..+.|.|||.    ++|+.||.+|+.|.
T Consensus        98 ~~~f~~~~~~~v~r----~~N~~Ad~LA~~a~  125 (128)
T PRK13907         98 IKSFDLFFIKWIPS----SQNKVADELARKAI  125 (128)
T ss_pred             HhcCCceEEEEcCc----hhchhHHHHHHHHH
Confidence            44445677899998    59999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	442
3qio_A	150	GAG-POL polyprotein; RNAse H, inhibitor, nuclease,	98.38
2kq2_A	147	Ribonuclease H-related protein; PSI, NESG, protein	98.32
3h08_A	146	RNH (ribonuclease H); RNAse H, 3D-structure, endon	98.17
3p1g_A	165	Xenotropic murine leukemia virus-related virus (X	98.1
2qkb_A	154	Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy	98.08
1jl1_A	155	Ribonuclease HI; RNAse HI, protein stability, ther	98.03
2e4l_A	158	Ribonuclease HI, RNAse HI; hydrolase, endoribonucl	98.02
1ril_A	166	Ribonuclease H; hydrolase(endoribonuclease); 2.80A	97.82
1mu2_A	555	HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym	97.74
2lsn_A	165	Reverse transcriptase; RNAse H, viral protein; NMR	97.69
2zd1_A	557	Reverse transcriptase/ribonuclease H; P51/P66, het	97.56
3hst_B	141	Protein RV2228C/MT2287; ribonuclease H1, RV2228C N	95.95
3u3g_D	140	Ribonuclease H, RNAse H1; hydrolase, cleave the RN	95.65
2ehg_A	149	Ribonuclease HI; RNAse HI, hyperthermophilic archa	94.87

>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A

Probab=98.38  E-value=1.2e-07  Score=84.71  Aligned_cols=33  Identities=30%  Similarity=0.526  Sum_probs=29.7

Q ss_pred             hccceeEEEeccCCCCCCCChHHHHHhcCCCCC
Q psy10399        276 ACGKEISFMWCPSHCGISGNEAVDVAAKNPSPS  308 (442)
Q Consensus       276 ~~~~~I~l~WIPgH~gI~GNE~AD~lAK~A~~~  308 (442)
                      .+...|+|.|||||+|++|||.||++|++|+..
T Consensus       115 ~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~  147 (150)
T 3qio_A          115 IKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK  147 (150)
T ss_dssp             TTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred             hhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence            356789999999999999999999999999754

>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A

Probab=98.32  E-value=5.9e-08  Score=86.17  Aligned_cols=31  Identities=29%  Similarity=0.182  Sum_probs=28.0

Q ss_pred             eeEEEeccCCCCCCCChHHHHHhcCCCCCCC
Q psy10399        280 EISFMWCPSHCGISGNEAVDVAAKNPSPSFP  310 (442)
Q Consensus       280 ~I~l~WIPgH~gI~GNE~AD~lAK~A~~~~~  310 (442)
                      .|+|.|||||+|++|||.||+|||+|+...+
T Consensus       109 ~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~  139 (147)
T 2kq2_A          109 IYSFEKVKAHSGNEFNDYVDMKAKSALGIRD  139 (147)
T ss_dssp             TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCC
T ss_pred             CeeEEEecCcCCCcchHHHHHHHHHHHhccc
Confidence            7999999999999999999999999876543

>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}

Probab=98.17  E-value=1.5e-07  Score=82.98  Aligned_cols=29  Identities=17%  Similarity=0.146  Sum_probs=25.4

Q ss_pred             ceeEEEeccCCCCCCCChHHHHHhcCCCC
Q psy10399        279 KEISFMWCPSHCGISGNEAVDVAAKNPSP  307 (442)
Q Consensus       279 ~~I~l~WIPgH~gI~GNE~AD~lAK~A~~  307 (442)
                      ..|+|.|||||+|++|||.||+|||+|+.
T Consensus       115 ~~v~~~~V~gH~g~~~N~~AD~LA~~a~~  143 (146)
T 3h08_A          115 HRVTFHKVKGHSDNPYNSRADELARLAIK  143 (146)
T ss_dssp             SEEEEEECCC-CCSHHHHHHHHHHHHHHH
T ss_pred             CceEEEEcCCcCCcHhHHHHHHHHHHHHH
Confidence            45999999999999999999999998763

>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A

Probab=98.10  E-value=3.3e-07  Score=83.19  Aligned_cols=31  Identities=32%  Similarity=0.538  Sum_probs=28.5

Q ss_pred             ccceeEEEeccCCCC-----CCCChHHHHHhcCCCC
Q psy10399        277 CGKEISFMWCPSHCG-----ISGNEAVDVAAKNPSP  307 (442)
Q Consensus       277 ~~~~I~l~WIPgH~g-----I~GNE~AD~lAK~A~~  307 (442)
                      .+..|+|.|||||+|     ++|||.||++||+|+.
T Consensus       120 ~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~  155 (165)
T 3p1g_A          120 LPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAM  155 (165)
T ss_dssp             SBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHh
Confidence            567899999999999     9999999999998864

>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*

Probab=98.08  E-value=5.7e-07  Score=80.08  Aligned_cols=30  Identities=37%  Similarity=0.663  Sum_probs=27.5

Q ss_pred             cceeEEEeccCCCCCCCChHHHHHhcCCCC
Q psy10399        278 GKEISFMWCPSHCGISGNEAVDVAAKNPSP  307 (442)
Q Consensus       278 ~~~I~l~WIPgH~gI~GNE~AD~lAK~A~~  307 (442)
                      +..|+|.|||||+|++|||.||+|||+|+.
T Consensus       121 ~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~  150 (154)
T 2qkb_A          121 GMDIQWMHVPGHSGFIGNEEADRLAREGAK  150 (154)
T ss_dssp             TCEEEEEECCTTSSCHHHHHHHHHHHHHHT
T ss_pred             CCceEEEEccCCCCCHhHHHHHHHHHHHHH
Confidence            467999999999999999999999998864

>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...

Probab=98.03  E-value=8.9e-07  Score=79.10  Aligned_cols=30  Identities=27%  Similarity=0.509  Sum_probs=27.3

Q ss_pred             ceeEEEeccCCCCCCCChHHHHHhcCCCCC
Q psy10399        279 KEISFMWCPSHCGISGNEAVDVAAKNPSPS  308 (442)
Q Consensus       279 ~~I~l~WIPgH~gI~GNE~AD~lAK~A~~~  308 (442)
                      ..|+|.|||||+|++|||.||+|||+|+..
T Consensus       114 ~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~  143 (155)
T 1jl1_A          114 HQIKWEWVKGHAGHPENERADELARAAAMN  143 (155)
T ss_dssp             CEEEEEECCSSTTCHHHHHHHHHHHHHHHS
T ss_pred             CceEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence            479999999999999999999999998643

>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A

Probab=98.02  E-value=9.1e-07  Score=79.34  Aligned_cols=30  Identities=27%  Similarity=0.551  Sum_probs=27.5

Q ss_pred             ceeEEEeccCCCCCCCChHHHHHhcCCCCC
Q psy10399        279 KEISFMWCPSHCGISGNEAVDVAAKNPSPS  308 (442)
Q Consensus       279 ~~I~l~WIPgH~gI~GNE~AD~lAK~A~~~  308 (442)
                      ..|+|.|||||+|++|||.||+|||+|+..
T Consensus       116 ~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~  145 (158)
T 2e4l_A          116 HQIDWRWVKGHAGHAENERCDQLARAAAEA  145 (158)
T ss_dssp             SEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred             CcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence            479999999999999999999999998654

>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A

Probab=97.82  E-value=2e-06  Score=77.82  Aligned_cols=30  Identities=30%  Similarity=0.486  Sum_probs=27.4

Q ss_pred             ceeEEEeccCCCCCCCChHHHHHhcCCCCC
Q psy10399        279 KEISFMWCPSHCGISGNEAVDVAAKNPSPS  308 (442)
Q Consensus       279 ~~I~l~WIPgH~gI~GNE~AD~lAK~A~~~  308 (442)
                      ..|+|.|||||+|++|||.||+|||+|+..
T Consensus       119 ~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~  148 (166)
T 1ril_A          119 HRVRFHFVKGHTGHPENERVDREARRQAQS  148 (166)
T ss_dssp             SEEECCCCCGGGSCTHHHHHHHHHHHHHTS
T ss_pred             CeEEEEEeeCCCCchhHHHHHHHHHHHHHH
Confidence            479999999999999999999999988654

>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B

Probab=97.74  E-value=1.1e-05  Score=86.02  Aligned_cols=31  Identities=32%  Similarity=0.534  Sum_probs=28.4

Q ss_pred             hccceeEEEeccCCCCCCCChHHHHHhcCCC
Q psy10399        276 ACGKEISFMWCPSHCGISGNEAVDVAAKNPS  306 (442)
Q Consensus       276 ~~~~~I~l~WIPgH~gI~GNE~AD~lAK~A~  306 (442)
                      ..+..|+|.|||||+|++|||.||++||+|+
T Consensus       525 ~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~  555 (555)
T 1mu2_A          525 IKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI  555 (555)
T ss_dssp             HHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred             ccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence            4567899999999999999999999999884

>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}

Probab=97.69  E-value=4e-06  Score=76.05  Aligned_cols=30  Identities=23%  Similarity=0.203  Sum_probs=25.8

Q ss_pred             ccceeEEEeccCCCCC------CCChHHHHHhcCCC
Q psy10399        277 CGKEISFMWCPSHCGI------SGNEAVDVAAKNPS  306 (442)
Q Consensus       277 ~~~~I~l~WIPgH~gI------~GNE~AD~lAK~A~  306 (442)
                      ....|+|.|||||+|+      +|||.||+||++|+
T Consensus       126 ~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA  161 (165)
T 2lsn_A          126 MKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGS  161 (165)
T ss_dssp             HCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhh
Confidence            3456999999999996      58999999999875

>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...

Probab=97.56  E-value=1.8e-05  Score=84.44  Aligned_cols=29  Identities=34%  Similarity=0.637  Sum_probs=24.2

Q ss_pred             ccceeEEEeccCCCCCCCChHHHHHhcCC
Q psy10399        277 CGKEISFMWCPSHCGISGNEAVDVAAKNP  305 (442)
Q Consensus       277 ~~~~I~l~WIPgH~gI~GNE~AD~lAK~A  305 (442)
                      ....|+|.|||||+|++|||.||++||+|
T Consensus       529 ~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a  557 (557)
T 2zd1_A          529 KKEKVYLAWVPAHKGIGGNEQVDKLVSAG  557 (557)
T ss_dssp             HCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred             cCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence            35689999999999999999999999986

>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}

Probab=95.95  E-value=0.0021  Score=55.15  Aligned_cols=30  Identities=23%  Similarity=0.418  Sum_probs=25.0

Q ss_pred             hhhhccceeEEEeccCCCCCCCChHHHHHhcCCC
Q psy10399        273 DLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS  306 (442)
Q Consensus       273 ~L~~~~~~I~l~WIPgH~gI~GNE~AD~lAK~A~  306 (442)
                      .+..+...|+|.|||+    +|||.||++||+|.
T Consensus       102 ~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~  131 (141)
T 3hst_B          102 ALASQFRRINYEWVPR----ARNTYADRLANDAM  131 (141)
T ss_dssp             HHHTTSSEEEEEECCG----GGCHHHHHHHHHHH
T ss_pred             HHHhcCCeEEEEEcCC----cccHHHHHHHHHHH
Confidence            3445567899999995    99999999999875

>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}

Probab=95.65  E-value=0.0025  Score=54.31  Aligned_cols=27  Identities=15%  Similarity=0.187  Sum_probs=22.6

Q ss_pred             hccceeEEEeccCCCCCCCChHHHHHhcCCC
Q psy10399        276 ACGKEISFMWCPSHCGISGNEAVDVAAKNPS  306 (442)
Q Consensus       276 ~~~~~I~l~WIPgH~gI~GNE~AD~lAK~A~  306 (442)
                      ++...|+|.|||+    +|||.||++||+|.
T Consensus       109 ~~~~~v~~~~V~~----~~N~~AD~LA~~a~  135 (140)
T 3u3g_D          109 ERVPNLVFVHIPR----EKNARADELVNEAI  135 (140)
T ss_dssp             HHCTTCEEEECCG----GGGHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCc----hhhHHHHHHHHHHH
Confidence            3335899999994    99999999999874

>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A

Probab=94.87  E-value=0.0055  Score=53.45  Aligned_cols=24  Identities=17%  Similarity=0.462  Sum_probs=21.2

Q ss_pred             eeEEEeccCCCCCCCChHHHHHhcCCCC
Q psy10399        280 EISFMWCPSHCGISGNEAVDVAAKNPSP  307 (442)
Q Consensus       280 ~I~l~WIPgH~gI~GNE~AD~lAK~A~~  307 (442)
                      .|+|.|||+    +|||.||++||+|+.
T Consensus       110 ~v~~~~V~~----~~N~~AD~LA~~a~~  133 (149)
T 2ehg_A          110 NATLIWVPR----EENKEADRLSRVAYE  133 (149)
T ss_dssp             TCEEEECCG----GGCHHHHHHHHHHHH
T ss_pred             CEEEEEcCC----cccHHHHHHHHHHHH
Confidence            499999999    599999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	442
d1jl1a_	152	RNase H (RNase HI) {Escherichia coli [TaxId: 562]}	98.59
d1mu2a1	126	HIV RNase H (Domain of reverse transcriptase) {Hum	98.54
d1rila_	147	RNase H (RNase HI) {Thermus thermophilus [TaxId: 2	98.47

>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=2.7e-09  Score=91.99  Aligned_cols=32  Identities=25%  Similarity=0.446  Sum_probs=28.7

Q ss_pred             ccceeEEEeccCCCCCCCChHHHHHhcCCCCC
Q psy10399        277 CGKEISFMWCPSHCGISGNEAVDVAAKNPSPS  308 (442)
Q Consensus       277 ~~~~I~l~WIPgH~gI~GNE~AD~lAK~A~~~  308 (442)
                      ....|+|+|||||+|++|||.||+|||+|+..
T Consensus       110 ~~~~V~~~wV~gH~g~~gNe~AD~LAk~aa~~  141 (152)
T d1jl1a_         110 GQHQIKWEWVKGHAGHPENERADELARAAAMN  141 (152)
T ss_dssp             TTCEEEEEECCSSTTCHHHHHHHHHHHHHHHS
T ss_pred             hcceeEEEEecccCCCccHHHHHHHHHHHHhC
Confidence            34579999999999999999999999999753

>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: HIV RNase H (Domain of reverse transcriptase)
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=98.54  E-value=1.3e-08  Score=85.74  Aligned_cols=29  Identities=34%  Similarity=0.601  Sum_probs=26.6

Q ss_pred             ccceeEEEeccCCCCCCCChHHHHHhcCC
Q psy10399        277 CGKEISFMWCPSHCGISGNEAVDVAAKNP  305 (442)
Q Consensus       277 ~~~~I~l~WIPgH~gI~GNE~AD~lAK~A  305 (442)
                      ....|.|.|||||+|++|||.||+||++|
T Consensus        97 ~~~~v~~~wV~gH~g~~gNe~AD~LA~~a  125 (126)
T d1mu2a1          97 KKEAIYVAWVPAHKGIGGNQEVDHLVSQG  125 (126)
T ss_dssp             HCSEEEEEECCSSSCCTTHHHHHHHHHTT
T ss_pred             hcceeEEEEEeCCCCCcchHHHHHHHHhh
Confidence            34579999999999999999999999987

>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Ribonuclease H
domain: RNase H (RNase HI)
species: Thermus thermophilus [TaxId: 274]

Probab=98.47  E-value=6.9e-09  Score=89.50  Aligned_cols=32  Identities=28%  Similarity=0.445  Sum_probs=28.4

Q ss_pred             ccceeEEEeccCCCCCCCChHHHHHhcCCCCC
Q psy10399        277 CGKEISFMWCPSHCGISGNEAVDVAAKNPSPS  308 (442)
Q Consensus       277 ~~~~I~l~WIPgH~gI~GNE~AD~lAK~A~~~  308 (442)
                      ....|+|.|||||+|++|||.||+|||+|+.+
T Consensus       112 ~~~~v~~~wVkgHsg~~gNe~AD~LAk~aa~~  143 (147)
T d1rila_         112 APHRVRFHFVKGHTGHPENERVDREARRQAQS  143 (147)
T ss_dssp             TTSEEECCCCCGGGSCTHHHHHHHHHHHHHTS
T ss_pred             hhcccceEEccCCCCCcchHHHHHHHHHHHHH
Confidence            35679999999999999999999999998654