Psyllid ID: psy10841

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MAGNPMGARNMAGNPMEARNMAGNPLGARNMATDMAGNPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERAKVECGGIHS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccEEEEEEccEEEEEEEEEcccEEEEccccccccccccEEEEEcEEEccccccccEEEcEEEEEEccccccccccccEEEEEcccccccccccccccccccccccccccEEEEEEccccccccccccccEEEEccccccccccccccccEEEEccccccccccccccccccccccccccccEEEEEEEEccccccccccccEEEcccccHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccEccEEccccccccEEEEEEccEEEEEEEEEEccEEEEccHHHHHcccccEEEEEcccEccccccccEEEEEEEEEEcccccccccccccEEEEEccccccEccEccccEcccccccccccEEEEEEccccccccccccEcEEEEEEEcccccccccccccEEEEcccccccEccccccccEEEEEcccEEEEEEEEEccEcccccEcccccEEEEEHHHcHHHHHHHccHcccccccccc
Coil and Loop (DISEMBL)
magnpmgarnmagnpmearnmagnplgarnmatdmagnpilgsgrvvggkkaelgAWPWLIALYRDGffhcggvvldeswVMTAAHCVDGFEKHYFEVYAGMlrrfsfspteqvrpvSRIVMHSMFKRAEMTNDLALLQLAaplrynryvrpiclpdvtetpepystctavgwgavfehgpdpdhmrevqvpilpackhYEDRIADVIcagmpqggrdtcqgdsggpllcpvpgsqgrwYVAGVVshgegcarpnepgvytRVSQFVPwlmsnserakvecggihs
Flexible Loop (DISEMBL)
MAGNPMGARNMAGNPMEARNMAGNPLGARNMATDMAGNPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRfsfspteqvrpVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPwlmsnserakvecggihs
Low Complexity Region (SEG)
MAGNPMGARNMAGNPMEARNMAGNPLGARNMATDMAGNPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERAKVECGGIHS
Disordered region (IsUnstruct)
***************************************ILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS**************
Disordered Region (DISOPRED)
****************************************LGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR********VRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLM***************
Disordered Region (DISEMBL)
********RNMAGNPMEARNMAGNPLGARNMATDMAGNPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERAKVECGGIHS
Disordered Region (DISPRO)
****PMGARNMAGNPMEARNMAGNPLGARNMATDMAGNPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGNPMGARNMAGNPMEARNMAGNPLGARNMATDMAGNPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERAKVECGGIHS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
P98159	2616	Serine protease nudel OS=	yes	N/A	0.828	0.090	0.506	2e-69
P26262	638	Plasma kallikrein OS=Mus	yes	N/A	0.807	0.362	0.389	7e-48
P14272	638	Plasma kallikrein OS=Ratt	yes	N/A	0.814	0.365	0.359	1e-46
P98073	1019	Enteropeptidase OS=Homo s	yes	N/A	0.786	0.220	0.389	7e-46
P0CW18	603	Putative serine protease	no	N/A	0.881	0.417	0.415	8e-46
P03952	638	Plasma kallikrein OS=Homo	no	N/A	0.811	0.363	0.364	3e-45
P98072	1035	Enteropeptidase OS=Bos ta	no	N/A	0.793	0.219	0.373	7e-45
P98074	1034	Enteropeptidase OS=Sus sc	no	N/A	0.793	0.219	0.373	2e-44
Q2KJ63	636	Plasma kallikrein OS=Bos	no	N/A	0.797	0.358	0.362	8e-44
Q9ES87	342	Prostasin OS=Rattus norve	no	N/A	0.772	0.646	0.370	7e-42

>sp|P98159|NUDEL_DROME Serine protease nudel OS=Drosophila melanogaster GN=ndl PE=1 SV=2

 Score =  262 bits (670), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 125/247 (50%), Positives = 170/247 (68%), Gaps = 10/247 (4%)

Query: 40   ILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVY 99
            I+G GR+VGG       WP+++A+YR+G FHCGG +  + W+++AAHCV  + K+++EV 
Sbjct: 1139 IVGDGRIVGGSYTSALQWPFVVAIYRNGKFHCGGTIYSDRWIISAAHCVINYGKYFYEVR 1198

Query: 100  AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVT 159
            AG+LRR S+SP  Q++PVS +V+H  ++R  M NDL+LL+L  PL++NR+V+PICLPD  
Sbjct: 1199 AGLLRRSSYSPATQIQPVSHVVVHQAYERRSMRNDLSLLRLLNPLQFNRWVKPICLPDKG 1258

Query: 160  ET---------PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICA 210
             T         P  ++ CT VGWGA+ E GP  D MR+V VPI   C   ED+ ++ ICA
Sbjct: 1259 RTTVGDDWIWGPVEHTLCTVVGWGAIREKGPSSDPMRQVIVPIRKKCTDPEDQASEDICA 1318

Query: 211  GMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
            G P GGRD CQGDSGGPL C    +   +Y+AGVVSHG GCARP E GVYTRV+ ++ WL
Sbjct: 1319 GDPDGGRDACQGDSGGPLFCRSVSNPDEFYLAGVVSHGNGCARPQEFGVYTRVTLYLDWL 1378

Query: 271  -MSNSER 276
             M+ + R
Sbjct: 1379 EMATTPR 1385

Component of the extracellular signaling pathway that establishes the dorsal-ventral pathway of the embryo. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|P26262|KLKB1_MOUSE Plasma kallikrein OS=Mus musculus GN=Klkb1 PE=1 SV=2

 Score =  191 bits (484), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 97/249 (38%), Positives = 145/249 (58%), Gaps = 18/249 (7%)

Query: 43  SGRVVGGKKAELGAWPWLIALYRDGFFH---CGGVVLDESWVMTAAHCVDGFEK-HYFEV 98
           + R+VGG  A LG WPW ++L          CGG ++   WV+TAAHC DG      + +
Sbjct: 388 NARIVGGTNASLGEWPWQVSLQVKLVSQTHLCGGSIIGRQWVLTAAHCFDGIPYPDVWRI 447

Query: 99  YAGMLRRFSFSPTEQVRPVSRI---VMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICL 155
           Y G+L   S S   +  P SRI   ++H  +K +E   D+AL++L  PL Y  + +PICL
Sbjct: 448 YGGIL---SLSEITKETPSSRIKELIIHQEYKVSEGNYDIALIKLQTPLNYTEFQKPICL 504

Query: 156 PDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDRIAD--VICA 210
           P   +T   Y+ C   GWG   E G   + +++  +P++P   C K Y D + +  +ICA
Sbjct: 505 PSKADTNTIYTNCWVTGWGYTKEQGETQNILQKATIPLVPNEECQKKYRDYVINKQMICA 564

Query: 211 GMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           G  +GG D C+GDSGGPL+C      GRW + G+ S GEGCAR ++PGVYT+VS+++ W+
Sbjct: 565 GYKEGGTDACKGDSGGPLVCK---HSGRWQLVGITSWGEGCARKDQPGVYTKVSEYMDWI 621

Query: 271 MSNSERAKV 279
           +  ++ + V
Sbjct: 622 LEKTQSSDV 630

The enzyme cleaves Lys-Arg and Arg-Ser bonds. It activates, in a reciprocal reaction, factor XII after its binding to a negatively charged surface. It also releases bradykinin from HMW kininogen and may also play a role in the renin-angiotensin system by converting prorenin into renin.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 3

EC: 4

>sp|P14272|KLKB1_RAT Plasma kallikrein OS=Rattus norvegicus GN=Klkb1 PE=1 SV=1

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/245 (35%), Positives = 139/245 (56%), Gaps = 12/245 (4%)

Query: 43  SGRVVGGKKAELGAWPWLIALYRDGFFH---CGGVVLDESWVMTAAHCVDGFEK-HYFEV 98
           + R+VGG  + LG WPW ++L          CGG ++   W++TAAHC DG      + +
Sbjct: 388 NARIVGGTNSSLGEWPWQVSLQVKLVSQNHMCGGSIIGRQWILTAAHCFDGIPYPDVWRI 447

Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV 158
           Y G+L     +       +  +++H  +K +E + D+AL++L  PL Y  + +PICLP  
Sbjct: 448 YGGILNLSEITNKTPFSSIKELIIHQKYKMSEGSYDIALIKLQTPLNYTEFQKPICLPSK 507

Query: 159 TETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDRI--ADVICAGMP 213
            +T   Y+ C   GWG   E G   + +++  +P++P   C K Y D +    +ICAG  
Sbjct: 508 ADTNTIYTNCWVTGWGYTKERGETQNILQKATIPLVPNEECQKKYRDYVITKQMICAGYK 567

Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           +GG D C+GDSGGPL+C      GRW + G+ S GEGCAR  +PGVYT+V++++ W++  
Sbjct: 568 EGGIDACKGDSGGPLVCK---HSGRWQLVGITSWGEGCARKEQPGVYTKVAEYIDWILEK 624

Query: 274 SERAK 278
            + +K
Sbjct: 625 IQSSK 629

The enzyme cleaves Lys-Arg and Arg-Ser bonds. It activates, in a reciprocal reaction, factor XII after its binding to a negatively charged surface. It also releases bradykinin from HMW kininogen and may also play a role in the renin-angiotensin system by converting prorenin into renin.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 3

EC: 4

>sp|P98073|ENTK_HUMAN Enteropeptidase OS=Homo sapiens GN=TMPRSS15 PE=1 SV=3

 Score =  184 bits (467), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 92/236 (38%), Positives = 133/236 (56%), Gaps = 11/236 (4%)

Query: 45   RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDG--FEKHYFEVYAGM 102
            ++VGG  A+ GAWPW++ LY  G   CG  ++   W+++AAHCV G   E   +    G+
Sbjct: 784  KIVGGSNAKEGAWPWVVGLYYGGRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGL 843

Query: 103  LRRFSF-SPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
              + +  SP    R +  IV++  + R    ND+A++ L   + Y  Y++PICLP+  + 
Sbjct: 844  HMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPICLPEENQV 903

Query: 162  PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHY--EDRIAD-VICAGMPQGG 216
              P   C+  GWG V   G   + ++E  VP+L    C+    E  I + +ICAG  +GG
Sbjct: 904  FPPGRNCSIAGWGTVVYQGTTANILQEADVPLLSNERCQQQMPEYNITENMICAGYEEGG 963

Query: 217  RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
             D+CQGDSGGPL+C       RW++AGV S G  CA PN PGVY RVS+F  W+ S
Sbjct: 964  IDSCQGDSGGPLMCQ---ENNRWFLAGVTSFGYKCALPNRPGVYARVSRFTEWIQS 1016

Responsible for initiating activation of pancreatic proteolytic proenzymes (trypsin, chymotrypsin and carboxypeptidase A). It catalyzes the conversion of trypsinogen to trypsin which in turn activates other proenzymes including chymotrypsinogen, procarboxypeptidases, and proelastases.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

>sp|P0CW18|PRS56_HUMAN Putative serine protease 56 OS=Homo sapiens GN=PRSS56 PE=5 SV=1

 Score =  184 bits (466), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 110/265 (41%), Positives = 142/265 (53%), Gaps = 13/265 (4%)

Query: 25  PLGARNMATDMAGNPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTA 84
           P G R  +T    N     GR+VGG  A  GAWPWL+ L   G   CGGV++  SWV+TA
Sbjct: 87  PCGERRPST---ANVTRAHGRIVGGSAAPPGAWPWLVRLQLGGQPLCGGVLVAASWVLTA 143

Query: 85  AHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPL 144
           AHC  G        +   L   S     +  PV+RI+ H  F      NDLAL+QL  P+
Sbjct: 144 AHCFVGAPNELL--WTVTLAEGSRGEQAEEVPVNRILPHPKFDPRTFHNDLALVQLWTPV 201

Query: 145 RYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKHYED 202
                 RP+CLP   + P   + C   GWGA+FE GP+ + +RE +VP+L    C+    
Sbjct: 202 SPGGSARPVCLPQEPQEPPAGTACAIAGWGALFEDGPEAEAVREARVPLLSTDTCRRALG 261

Query: 203 ---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGV 259
              R + ++CAG   GG D+CQGDSGGPL C  PG + R  + GV S G+GC  P +PGV
Sbjct: 262 PGLRPSTMLCAGYLAGGVDSCQGDSGGPLTCSEPGPRPREVLFGVTSWGDGCGEPGKPGV 321

Query: 260 YTRVSQFVPWL---MSNSERAKVEC 281
           YTRV+ F  WL   MS S   +  C
Sbjct: 322 YTRVAVFKDWLQEQMSASSSREPSC 346

May play a role in eye development.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P03952|KLKB1_HUMAN Plasma kallikrein OS=Homo sapiens GN=KLKB1 PE=1 SV=1

 Score =  182 bits (461), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/244 (36%), Positives = 143/244 (58%), Gaps = 12/244 (4%)

Query: 43  SGRVVGGKKAELGAWPWLIALYRDGFFH---CGGVVLDESWVMTAAHCVDGFE-KHYFEV 98
           S R+VGG  +  G WPW ++L          CGG ++   WV+TAAHC DG   +  + +
Sbjct: 388 STRIVGGTNSSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRI 447

Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV 158
           Y+G+L     +       +  I++H  +K +E  +D+AL++L APL Y  + +PICLP  
Sbjct: 448 YSGILNLSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPICLPSK 507

Query: 159 TETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYED-RIAD-VICAGMP 213
            +T   Y+ C   GWG   E G   + +++V +P++    C K Y+D +I   ++CAG  
Sbjct: 508 GDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYK 567

Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           +GG+D C+GDSGGPL+C      G W + G+ S GEGCAR  +PGVYT+V++++ W++  
Sbjct: 568 EGGKDACKGDSGGPLVCK---HNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEK 624

Query: 274 SERA 277
           ++ +
Sbjct: 625 TQSS 628

The enzyme cleaves Lys-Arg and Arg-Ser bonds. It activates, in a reciprocal reaction, factor XII after its binding to a negatively charged surface. It also releases bradykinin from HMW kininogen and may also play a role in the renin-angiotensin system by converting prorenin into renin.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 3

EC: 4

>sp|P98072|ENTK_BOVIN Enteropeptidase OS=Bos taurus GN=TMPRSS15 PE=1 SV=1

 Score =  181 bits (458), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 89/238 (37%), Positives = 132/238 (55%), Gaps = 11/238 (4%)

Query: 43   SGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDG--FEKHYFEVYA 100
            S ++VGG  +  GAWPW++ALY D    CG  ++   W+++AAHCV G   E   ++   
Sbjct: 798  SPKIVGGSDSREGAWPWVVALYFDDQQVCGASLVSRDWLVSAAHCVYGRNMEPSKWKAVL 857

Query: 101  GMLRRFSF-SPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVT 159
            G+    +  SP  + R + +IV++  + +    ND+A++ L   + Y  Y++PICLP+  
Sbjct: 858  GLHMASNLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEEN 917

Query: 160  ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDR-----IADVICAGMPQ 214
            +   P   C+  GWGA+   G   D ++E  VP+L   K  +         +++CAG   
Sbjct: 918  QVFPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQMPEYNITENMVCAGYEA 977

Query: 215  GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
            GG D+CQGDSGGPL+C       RW +AGV S G  CA PN PGVY RV +F  W+ S
Sbjct: 978  GGVDSCQGDSGGPLMCQ---ENNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQS 1032

Responsible for initiating activation of pancreatic proteolytic proenzymes (trypsin, chymotrypsin and carboxypeptidase A). It catalyzes the conversion of trypsinogen to trypsin which in turn activates other proenzymes including chymotrypsinogen, procarboxypeptidases, and proelastases.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

>sp|P98074|ENTK_PIG Enteropeptidase OS=Sus scrofa GN=TMPRSS15 PE=1 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 89/238 (37%), Positives = 131/238 (55%), Gaps = 11/238 (4%)

Query: 43   SGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDG--FEKHYFEVYA 100
            S ++VGG  +  GAWPW++ALY +G   CG  ++   W+++AAHCV G   E   ++   
Sbjct: 797  SPKIVGGNDSREGAWPWVVALYYNGQLLCGASLVSRDWLVSAAHCVYGRNLEPSKWKAIL 856

Query: 101  GMLRRFSF-SPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVT 159
            G+    +  SP    R +  IV++  + R    +D+A++ L   + Y  Y++PICLP+  
Sbjct: 857  GLHMTSNLTSPQIVTRLIDEIVINPHYNRRRKDSDIAMMHLEFKVNYTDYIQPICLPEEN 916

Query: 160  ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDR-----IADVICAGMPQ 214
            +   P   C+  GWG V   G   D ++E  VP+L   K  +         +++CAG  +
Sbjct: 917  QVFPPGRICSIAGWGKVIYQGSPADILQEADVPLLSNEKCQQQMPEYNITENMMCAGYEE 976

Query: 215  GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
            GG D+CQGDSGGPL+C       RW +AGV S G  CA PN PGVY RV +F  W+ S
Sbjct: 977  GGIDSCQGDSGGPLMCL---ENNRWLLAGVTSFGYQCALPNRPGVYARVPKFTEWIQS 1031

Responsible for initiating activation of pancreatic proteolytic proenzymes (trypsin, chymotrypsin and carboxypeptidase A). It catalyzes the conversion of trypsinogen to trypsin which in turn activates other proenzymes including chymotrypsinogen, procarboxypeptidases, and proelastases.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

>sp|Q2KJ63|KLKB1_BOVIN Plasma kallikrein OS=Bos taurus GN=KLKB1 PE=2 SV=1

 Score =  177 bits (449), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 137/240 (57%), Gaps = 12/240 (5%)

Query: 45  RVVGGKKAELGAWPWLIALY---RDGFFHCGGVVLDESWVMTAAHCVDGFE-KHYFEVYA 100
           R+VGG  A  G WPW ++L    R     CGG ++   WV+TAAHC DG    + + +Y 
Sbjct: 391 RIVGGTNASWGEWPWQVSLQVKQRAQSHLCGGSIIGRQWVLTAAHCFDGLLLSNIWRIYG 450

Query: 101 GMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE 160
           G+L     +       +  I++H  +K +E ++D+AL++L APL +    + ICLP   +
Sbjct: 451 GILNLSEITTETSFSQIKEIIVHPNYKISEGSHDIALIKLEAPLNFTDLQKAICLPSKDD 510

Query: 161 TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDR--IADVICAGMPQG 215
           T   Y+ C   GWG   E G   + +++  +P++    C K Y D      +ICAG  +G
Sbjct: 511 TKPVYTDCWITGWGFTEEKGKIQNTLQKANIPLISNEECQKSYRDYKITKQMICAGYKEG 570

Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           G+D C+GDSGGPL+C     +  W++ G+ S GEGCAR  +PGVYT+V+++V W++  ++
Sbjct: 571 GKDACKGDSGGPLVCQ---HEETWHLVGITSWGEGCARREQPGVYTKVAEYVDWILEKTQ 627

The enzyme cleaves Lys-Arg and Arg-Ser bonds. It activates, in a reciprocal reaction, factor XII after its binding to a negatively charged surface. It also releases bradykinin from HMW kininogen and may also play a role in the renin-angiotensin system by converting prorenin into renin.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 3

EC: 4

>sp|Q9ES87|PRSS8_RAT Prostasin OS=Rattus norvegicus GN=Prss8 PE=2 SV=3

 Score =  171 bits (432), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 90/243 (37%), Positives = 139/243 (57%), Gaps = 22/243 (9%)

Query: 45  RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCV-DGFEKHYFEVYAGML 103
           R+ GG  A+ G WPW +++  +G   CGG ++   WV++AAHC      K  +EV  G  
Sbjct: 44  RITGGGSAKPGQWPWQVSITYNGVHVCGGSLVSNQWVVSAAHCFPREHSKEEYEVKLGAH 103

Query: 104 RRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE 163
           +  SFS    V  V++I+ HS ++      D+AL++L++P+ ++RY+RPICLP    +  
Sbjct: 104 QLDSFSNDIVVHTVAQIISHSSYREEGSQGDIALIRLSSPVTFSRYIRPICLPAANASFP 163

Query: 164 PYSTCTAVGWG----AVFEHGPDPDHMREVQVPILP----ACKHYEDRI--------ADV 207
               CT  GWG    +V    P P  +++++VP++     +C +  + +         D+
Sbjct: 164 NGLHCTVTGWGHVAPSVSLQTPRP--LQQLEVPLISRETCSCLYNINAVPEEPHTIQQDM 221

Query: 208 ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFV 267
           +CAG  +GG+D CQGDSGGPL CP+    G WY+AG+VS G+ C  PN PGVYT  S + 
Sbjct: 222 LCAGYVKGGKDACQGDSGGPLSCPI---DGLWYLAGIVSWGDACGAPNRPGVYTLTSTYA 278

Query: 268 PWL 270
            W+
Sbjct: 279 SWI 281

Possesses a trypsin-like cleavage specificity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
328712270	1775	PREDICTED: hypothetical protein LOC10016	0.807	0.130	0.609	1e-88
270002798	1640	serine protease P19 [Tribolium castaneum	0.940	0.164	0.510	1e-86
383856231	2004	PREDICTED: serine protease nudel-like [M	0.821	0.117	0.587	2e-86
189234398	1454	PREDICTED: similar to ovarian serine pro	0.940	0.185	0.510	2e-85
357625958	1603	ovarian serine protease [Danaus plexippu	0.790	0.140	0.575	8e-85
380015057	1837	PREDICTED: serine protease nudel-like [A	0.828	0.129	0.560	3e-84
112984438	1801	ovarian serine protease [Bombyx mori] gi	0.849	0.134	0.540	7e-84
328778729	1954	PREDICTED: serine protease nudel [Apis m	0.832	0.121	0.555	3e-83
242012000	1605	hypothetical protein Phum_PHUM269170 [Pe	0.828	0.147	0.557	3e-82
307180184	2030	Serine protease nudel [Camponotus florid	0.804	0.113	0.548	2e-79

>gi|328712270|ref|XP_001949959.2| PREDICTED: hypothetical protein LOC100168823 [Acyrthosiphon pisum]

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 142/233 (60%), Positives = 177/233 (75%), Gaps = 2/233 (0%)

Query: 45   RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
            RVVGG  +  GAWPWLIALY+DG FHCGGV+L + WV+TAAHCV+ ++KH++EV AG+LR
Sbjct: 897  RVVGGIASNPGAWPWLIALYQDGIFHCGGVILSDQWVLTAAHCVNQYKKHFYEVQAGILR 956

Query: 105  RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD--VTETP 162
            RFSFSP EQ R V+  ++H+ + R+ M NDLALL+L   L +NR++RP+CLPD  ++  P
Sbjct: 957  RFSFSPMEQSRIVTHAIIHTQYSRSTMENDLALLRLDRSLEFNRWIRPVCLPDSKLSWIP 1016

Query: 163  EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQG 222
             P + CTAVGWGA  EHGPDPD+MREV+VPIL  C H  D     ICAG   GG DTCQG
Sbjct: 1017 FPGTMCTAVGWGATVEHGPDPDNMREVEVPILAECTHKSDIDGKEICAGYLSGGHDTCQG 1076

Query: 223  DSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
            DSGGPLLC  P +  +WYVAG+VSHGEGCARP EPGVYTRV+ ++ W+   +E
Sbjct: 1077 DSGGPLLCREPNNLNKWYVAGIVSHGEGCARPMEPGVYTRVALYMDWIFKATE 1129

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002798|gb|EEZ99245.1| serine protease P19 [Tribolium castaneum]

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 143/280 (51%), Positives = 195/280 (69%), Gaps = 11/280 (3%)

Query: 5   PM--GARNMAGNPMEAR--NMAGNPLGARNMATDMAGNPILGSGRVVGGKKAELGAWPWL 60
           PM  G R    NP      + +   L AR      A + ++G  RVVGGK ++  AWPW+
Sbjct: 672 PMFCGMRLTVTNPFRIAEVDTSAEELLARMHLNRPATDELVGDSRVVGGKPSQPTAWPWV 731

Query: 61  IALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRI 120
           +++Y++G FHCGGV++++ W++TAAHCVD F   Y+E+  G+LRRFS+SP EQ R  +  
Sbjct: 732 VSIYKNGVFHCGGVLINDLWILTAAHCVDRFWFFYYEIQVGILRRFSYSPMEQNRWATVA 791

Query: 121 VMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLP-------DVTETPEPYSTCTAVGW 173
           + H  + +  + ND+AL++L+ P+R+NRYVRPICLP       D    P+P + C AVGW
Sbjct: 792 IPHEGYNKRSLKNDIALMKLSKPVRFNRYVRPICLPSQTTAGDDFLRGPKPNTVCVAVGW 851

Query: 174 GAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVP 233
           GA  EHG DPDH+REV+VPILP CKH ED+  D ICAG+ +GGRD CQGDSGGPL+C   
Sbjct: 852 GATVEHGSDPDHLREVEVPILPTCKHIEDKEGDEICAGLSEGGRDACQGDSGGPLMCQNE 911

Query: 234 GSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
            ++ +WY+AG+VSHGEGCARPNEPGVYT+VS+++ W+  N
Sbjct: 912 KNRSQWYLAGIVSHGEGCARPNEPGVYTKVSKYIGWIHEN 951

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856231|ref|XP_003703613.1| PREDICTED: serine protease nudel-like [Megachile rotundata]

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 144/245 (58%), Positives = 185/245 (75%), Gaps = 10/245 (4%)

Query: 40   ILGSG-RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEV 98
            I+GS  RVVGG+ ++  AWP+L+A+Y+DG FHCGG++L++ W++TAAHCVDG++ HY+E+
Sbjct: 874  IVGSQLRVVGGRASQPTAWPFLVAIYKDGRFHCGGIILNDLWILTAAHCVDGYKGHYYEI 933

Query: 99   YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLP-- 156
             AGMLRRFSFSP  Q R     + H  +   +MTND+ ++ L   LR+NR+VRP+CLP  
Sbjct: 934  QAGMLRRFSFSPMSQFRKARYAIAHPSYSGRDMTNDIGMIMLDDSLRFNRWVRPVCLPER 993

Query: 157  DVTET-----PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAG 211
            D+  +     PEP STC A+GWGA  E GPDPDH+REV+VPIL  CK+  D+IA  ICAG
Sbjct: 994  DILGSMWRVEPEPGSTCLAIGWGATSERGPDPDHLREVEVPILKHCKYETDQIAGTICAG 1053

Query: 212  MPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL- 270
             PQGGRD CQGDSGGPL+C  P SQ +WYVAG+VSHGEGC RPNEPG YT+VS F+ W+ 
Sbjct: 1054 YPQGGRDACQGDSGGPLMCRNPYSQSQWYVAGIVSHGEGCGRPNEPGAYTKVSYFLSWIK 1113

Query: 271  -MSNS 274
             +SNS
Sbjct: 1114 EVSNS 1118

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234398|ref|XP_974954.2| PREDICTED: similar to ovarian serine protease [Tribolium castaneum]

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 143/280 (51%), Positives = 195/280 (69%), Gaps = 11/280 (3%)

Query: 5   PM--GARNMAGNPMEAR--NMAGNPLGARNMATDMAGNPILGSGRVVGGKKAELGAWPWL 60
           PM  G R    NP      + +   L AR      A + ++G  RVVGGK ++  AWPW+
Sbjct: 569 PMFCGMRLTVTNPFRIAEVDTSAEELLARMHLNRPATDELVGDSRVVGGKPSQPTAWPWV 628

Query: 61  IALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRI 120
           +++Y++G FHCGGV++++ W++TAAHCVD F   Y+E+  G+LRRFS+SP EQ R  +  
Sbjct: 629 VSIYKNGVFHCGGVLINDLWILTAAHCVDRFWFFYYEIQVGILRRFSYSPMEQNRWATVA 688

Query: 121 VMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLP-------DVTETPEPYSTCTAVGW 173
           + H  + +  + ND+AL++L+ P+R+NRYVRPICLP       D    P+P + C AVGW
Sbjct: 689 IPHEGYNKRSLKNDIALMKLSKPVRFNRYVRPICLPSQTTAGDDFLRGPKPNTVCVAVGW 748

Query: 174 GAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVP 233
           GA  EHG DPDH+REV+VPILP CKH ED+  D ICAG+ +GGRD CQGDSGGPL+C   
Sbjct: 749 GATVEHGSDPDHLREVEVPILPTCKHIEDKEGDEICAGLSEGGRDACQGDSGGPLMCQNE 808

Query: 234 GSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
            ++ +WY+AG+VSHGEGCARPNEPGVYT+VS+++ W+  N
Sbjct: 809 KNRSQWYLAGIVSHGEGCARPNEPGVYTKVSKYIGWIHEN 848

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625958|gb|EHJ76225.1| ovarian serine protease [Danaus plexippus]

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 134/233 (57%), Positives = 177/233 (75%), Gaps = 7/233 (3%)

Query: 45  RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           RVVGGK ++  AWPW++ALYRDG FHCGGV+++++W+M+AAHCV+ F +HY+EV  GMLR
Sbjct: 223 RVVGGKPSQPAAWPWVVALYRDGMFHCGGVIVNQNWIMSAAHCVNKFWEHYYEVQVGMLR 282

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLP-------D 157
           RFSFSP EQ   V+ ++++  + + +M NDL+LL++   ++++R+VRPICLP       D
Sbjct: 283 RFSFSPQEQNHRVTHVIVNQNYNQEDMKNDLSLLRVKPGIQFSRWVRPICLPGPEVAGAD 342

Query: 158 VTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGR 217
               P   +TCTAVGWGA  E GPDPDHMREV+VP+   CKH ED+    +CAG+ +GGR
Sbjct: 343 WMWGPPAGTTCTAVGWGATVERGPDPDHMREVEVPVWEHCKHEEDQSGSEMCAGLAEGGR 402

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           D+CQGDSGGPLLC  P +  +WYVAG+VSHG+GCAR  EPGVYTRVS FV W+
Sbjct: 403 DSCQGDSGGPLLCTNPANPQQWYVAGIVSHGDGCARKGEPGVYTRVSVFVSWI 455

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015057|ref|XP_003691528.1| PREDICTED: serine protease nudel-like [Apis florea]

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 139/248 (56%), Positives = 182/248 (73%), Gaps = 11/248 (4%)

Query: 34  DMAGNPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK 93
           DM G+ +    RVVGG+ ++  AWP+L+A+Y++G F CGGV+L+E W++TAAHC++G+  
Sbjct: 722 DMVGSQL----RVVGGRASQPKAWPFLVAIYKNGVFCCGGVILNEMWILTAAHCLEGYTD 777

Query: 94  HYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPI 153
           HYFE+ AG+LRR SFSP  Q+R     VMH  +   +M ND+ +++L  PLR+NR++R +
Sbjct: 778 HYFEIQAGILRRHSFSPMSQIRKARHTVMHPRYNGKDMKNDIGMIKLDDPLRFNRWIRQV 837

Query: 154 CLP--DV-----TETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIAD 206
           CLP  D+        PEP STC A+GWGA+ E+GPDPDH+REV+VPIL  CKH  D+   
Sbjct: 838 CLPSKDILGPMWRNKPEPNSTCVAIGWGALREYGPDPDHLREVEVPILKNCKHEVDQNEA 897

Query: 207 VICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQF 266
            ICAG PQGGRD CQGDSGGPLLC  P S+ +WYVAG++SHGEGCARPNEPG YTRVS F
Sbjct: 898 AICAGYPQGGRDACQGDSGGPLLCRNPYSESQWYVAGIISHGEGCARPNEPGAYTRVSYF 957

Query: 267 VPWLMSNS 274
           + W+   S
Sbjct: 958 LNWIQEIS 965

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|112984438|ref|NP_001037168.1| ovarian serine protease [Bombyx mori] gi|18157552|gb|AAL62027.1|AF294884_1 ovarian serine protease [Bombyx mori]

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 140/259 (54%), Positives = 181/259 (69%), Gaps = 16/259 (6%)

Query: 19  RNMAGNPLGARNMATDMAGNPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDE 78
           RN    P   RNM ++          RVVGGK ++  AWP  +A+YR+G FHCGGV++ +
Sbjct: 617 RNELNRPWYIRNMRSE---------SRVVGGKPSQPTAWPRTVAIYRNGMFHCGGVIITQ 667

Query: 79  SWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALL 138
           +WV++AAHCV  F  HY+EV AGMLRRFSFSP EQ   V+ ++++  +K+ +M NDL+LL
Sbjct: 668 NWVISAAHCVHKFWDHYYEVQAGMLRRFSFSPQEQNHQVTHVIVNQHYKQDDMKNDLSLL 727

Query: 139 QLAAPLRYNRYVRPICLP-------DVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQV 191
           ++   ++++R+VRPICLP       D    P P + CTAVGWGA  EHGPDPDH+REV+V
Sbjct: 728 RVEPIIQFSRWVRPICLPGPDTAGPDWLWGPSPGTICTAVGWGATVEHGPDPDHLREVEV 787

Query: 192 PILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGC 251
           PI   CKH EDR    ICAG  +GG+D CQGDSGGPLLC  P +  +WY+AG+VSHG+GC
Sbjct: 788 PIWDKCKHEEDRAGKEICAGPSEGGKDACQGDSGGPLLCRNPTNSHQWYLAGIVSHGDGC 847

Query: 252 ARPNEPGVYTRVSQFVPWL 270
           AR  EPGVYTRVS FV W+
Sbjct: 848 ARKGEPGVYTRVSLFVKWI 866

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778729|ref|XP_623911.3| PREDICTED: serine protease nudel [Apis mellifera]

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 140/252 (55%), Positives = 185/252 (73%), Gaps = 14/252 (5%)

Query: 34   DMAGNPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK 93
            DM G+ +    RVVGG+ ++  AWP+L+A+Y++G F CGGV+L+E W++TAAHC++G+  
Sbjct: 839  DMVGSQL----RVVGGRASQPKAWPFLVAIYKNGIFCCGGVILNEMWILTAAHCLEGYTG 894

Query: 94   HYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPI 153
            HYFE+ AG+LRR SFSP  Q+R     VMH  +   +M ND+ +++L  PLR+NR++R +
Sbjct: 895  HYFEIQAGILRRHSFSPMSQIRRAGYTVMHPRYNGKDMKNDIGMIKLDDPLRFNRWIRQV 954

Query: 154  CLP--DV-----TETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIAD 206
            CLP  D+        PEP STC A+GWGA+ E+GPDPDH+REV+VPIL  CK+  D+   
Sbjct: 955  CLPGKDILGPMWRNKPEPNSTCIAIGWGALREYGPDPDHLREVEVPILKNCKYEVDQNEA 1014

Query: 207  VICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQF 266
             ICAG PQGGRD CQGDSGGPLLC  P S+ +WYVAG++SHGEGCARPNEPG YTRVS F
Sbjct: 1015 AICAGYPQGGRDACQGDSGGPLLCRNPYSESQWYVAGIISHGEGCARPNEPGAYTRVSYF 1074

Query: 267  VPWL---MSNSE 275
            + W+   MSN +
Sbjct: 1075 LSWIQEEMSNDQ 1086

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012000|ref|XP_002426731.1| hypothetical protein Phum_PHUM269170 [Pediculus humanus corporis] gi|212510902|gb|EEB13993.1| hypothetical protein Phum_PHUM269170 [Pediculus humanus corporis]

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 135/242 (55%), Positives = 174/242 (71%), Gaps = 5/242 (2%)

Query: 43  SGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +GRVVGG+++E  AWPW +A++++G F CGGV+LDE W++TAAHC++ + K+Y+EV  GM
Sbjct: 554 TGRVVGGRESEPRAWPWTVAIHKNGGFLCGGVILDEIWILTAAHCMEQYWKNYYEVRGGM 613

Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET- 161
           LRRFSFS  EQVR V  +++H  +    M+NDLALL+L  P  +NR+VRP CLP      
Sbjct: 614 LRRFSFSSMEQVRSVRDVILHENYNPTIMSNDLALLRLQKPFYFNRWVRPACLPGFRGNQ 673

Query: 162 ----PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGR 217
               P P + CTAVGWGA+ EHG D D +REV+VPIL +CKH ED     ICAG  +GG+
Sbjct: 674 GFFFPVPGTRCTAVGWGALKEHGIDADQLREVEVPILKSCKHKEDLAGAEICAGKAEGGK 733

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERA 277
           DTCQGDSGGPLLC    +   WYVAG+VSHGEGCARP EPG YTR+  F+ W+ +N+   
Sbjct: 734 DTCQGDSGGPLLCRTSKTSFSWYVAGIVSHGEGCARPGEPGAYTRIGLFLDWITANARDY 793

Query: 278 KV 279
           KV
Sbjct: 794 KV 795

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180184|gb|EFN68217.1| Serine protease nudel [Camponotus floridanus]

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 131/239 (54%), Positives = 171/239 (71%), Gaps = 9/239 (3%)

Query: 45   RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
            RVVGG+ ++  AWP+L+A+Y+DG FHCGGV++ E  V+TA HC+DG+EKHY+E+ AG LR
Sbjct: 941  RVVGGRASQPKAWPFLVAIYKDGHFHCGGVIISEIHVLTAGHCMDGYEKHYYEIQAGTLR 1000

Query: 105  RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVT----- 159
            R SFSPT Q R    IV+H  +++  M ND++L+ L  P  +NR+VR +CLP  +     
Sbjct: 1001 RSSFSPTGQSRRAKFIVLHPDYEKKHMQNDVSLVMLDKPFIFNRWVRQVCLPSPSIMGPE 1060

Query: 160  --ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGR 217
              E P P S C A+GWGA+ E GP+ D++REV+VPILP CKH  DR    ICAG P+GG+
Sbjct: 1061 WEEEPSPLSMCVAIGWGALREDGPNSDYLREVEVPILPKCKHLPDRNKATICAGYPEGGQ 1120

Query: 218  DTCQGDSGGPLLCPVPGS--QGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNS 274
            DTCQGDSGGPL+C       Q  WYVAG+VSHG+GCARPNEPGVY ++S F+ W+   S
Sbjct: 1121 DTCQGDSGGPLMCRRQDFDLQAIWYVAGIVSHGDGCARPNEPGVYMKISYFLDWIQQMS 1179

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
FB|FBgn0002926	2616	ndl "nudel" [Drosophila melano	0.828	0.090	0.506	5.9e-66
UNIPROTKB|F1Q3Q5	602	PRSS56 "Uncharacterized protei	0.842	0.400	0.438	2.9e-48
MGI|MGI:102849	638	Klkb1 "kallikrein B, plasma 1"	0.807	0.362	0.393	6e-48
UNIPROTKB|P0CW18	603	PRSS56 "Putative serine protea	0.881	0.417	0.415	7.7e-48
RGD|67382	638	Klkb1 "kallikrein B, plasma 1"	0.814	0.365	0.363	4.2e-47
UNIPROTKB|Q5FVS2	638	Klkb1 "RCG59057, isoform CRA_a	0.814	0.365	0.363	4.2e-47
UNIPROTKB|F1SMT5	606	LOC100737499 "Uncharacterized	0.867	0.409	0.414	8.8e-47
UNIPROTKB|F1NSE5	272	PRSS56 "Uncharacterized protei	0.825	0.867	0.406	3e-46
ZFIN|ZDB-GENE-091204-83	1045	tmprss15 "transmembrane protea	0.793	0.217	0.407	4.8e-46
UNIPROTKB|H0YAC1	686	KLKB1 "Plasma kallikrein heavy	0.804	0.335	0.371	6.2e-46

FB|FBgn0002926 ndl "nudel" [Drosophila melanogaster (taxid:7227)]

 Score = 687 (246.9 bits), Expect = 5.9e-66, P = 5.9e-66
 Identities = 125/247 (50%), Positives = 170/247 (68%)

Query:    40 ILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVY 99
             I+G GR+VGG       WP+++A+YR+G FHCGG +  + W+++AAHCV  + K+++EV 
Sbjct:  1139 IVGDGRIVGGSYTSALQWPFVVAIYRNGKFHCGGTIYSDRWIISAAHCVINYGKYFYEVR 1198

Query:   100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVT 159
             AG+LRR S+SP  Q++PVS +V+H  ++R  M NDL+LL+L  PL++NR+V+PICLPD  
Sbjct:  1199 AGLLRRSSYSPATQIQPVSHVVVHQAYERRSMRNDLSLLRLLNPLQFNRWVKPICLPDKG 1258

Query:   160 ET---------PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICA 210
              T         P  ++ CT VGWGA+ E GP  D MR+V VPI   C   ED+ ++ ICA
Sbjct:  1259 RTTVGDDWIWGPVEHTLCTVVGWGAIREKGPSSDPMRQVIVPIRKKCTDPEDQASEDICA 1318

Query:   211 GMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             G P GGRD CQGDSGGPL C    +   +Y+AGVVSHG GCARP E GVYTRV+ ++ WL
Sbjct:  1319 GDPDGGRDACQGDSGGPLFCRSVSNPDEFYLAGVVSHGNGCARPQEFGVYTRVTLYLDWL 1378

Query:   271 -MSNSER 276
              M+ + R
Sbjct:  1379 EMATTPR 1385

GO:0009950 "dorsal/ventral axis specification" evidence=IMP

GO:0016485 "protein processing" evidence=IGI

GO:0008063 "Toll signaling pathway" evidence=TAS

GO:0007313 "maternal specification of dorsal/ventral axis, oocyte, soma encoded" evidence=TAS

GO:0007306 "eggshell chorion assembly" evidence=IMP

GO:0008236 "serine-type peptidase activity" evidence=NAS;TAS

GO:0007310 "oocyte dorsal/ventral axis specification" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0006508 "proteolysis" evidence=IEA;NAS;TAS

GO:0008233 "peptidase activity" evidence=TAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0007343 "egg activation" evidence=IMP

UNIPROTKB|F1Q3Q5 PRSS56 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 110/251 (43%), Positives = 139/251 (55%)

Query:    25 PLGARNMATDMAGNPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTA 84
             P G R  +T    N     GR+VGG  A  GAWPWL+ L+  G   CGGV++  SWV+TA
Sbjct:    92 PCGERRPSTV---NVTRAHGRIVGGSAAPPGAWPWLVRLHLGGQPLCGGVLVAASWVLTA 148

Query:    85 AHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPL 144
             AHC  G           +         E+V PV+RI+ H  F      NDLAL+QL  P+
Sbjct:   149 AHCFAGAPNELLWTVT-LAEGPRGEQAEEV-PVNRILPHPKFDPRTFHNDLALVQLWTPV 206

Query:   145 RYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKHY-- 200
                  VRP+CLP     P   + C   GWGA+FE GP+ + +RE +VP+L A  CK    
Sbjct:   207 SRAGAVRPVCLPQGPREPPAGTACAIAGWGALFEDGPEAEAVREARVPLLSADTCKRALG 266

Query:   201 -EDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGV 259
              E   + ++CAG   GG D+CQGDSGGPL C  PG Q R  + GV S G+GC  P +PGV
Sbjct:   267 PELHPSSMLCAGYLAGGIDSCQGDSGGPLTCSEPGPQPREVLYGVTSWGDGCGEPGKPGV 326

Query:   260 YTRVSQFVPWL 270
             YTRV+ F  WL
Sbjct:   327 YTRVAVFRDWL 337

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

MGI|MGI:102849 Klkb1 "kallikrein B, plasma 1" [Mus musculus (taxid:10090)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 98/249 (39%), Positives = 146/249 (58%)

Query:    43 SGRVVGGKKAELGAWPWLIALYRD--GFFH-CGGVVLDESWVMTAAHCVDGFE-KHYFEV 98
             + R+VGG  A LG WPW ++L        H CGG ++   WV+TAAHC DG      + +
Sbjct:   388 NARIVGGTNASLGEWPWQVSLQVKLVSQTHLCGGSIIGRQWVLTAAHCFDGIPYPDVWRI 447

Query:    99 YAGMLRRFSFSPTEQVRPVSRI---VMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICL 155
             Y G+L   S S   +  P SRI   ++H  +K +E   D+AL++L  PL Y  + +PICL
Sbjct:   448 YGGIL---SLSEITKETPSSRIKELIIHQEYKVSEGNYDIALIKLQTPLNYTEFQKPICL 504

Query:   156 PDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDRIAD--VICA 210
             P   +T   Y+ C   GWG   E G   + +++  +P++P   C K Y D + +  +ICA
Sbjct:   505 PSKADTNTIYTNCWVTGWGYTKEQGETQNILQKATIPLVPNEECQKKYRDYVINKQMICA 564

Query:   211 GMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             G  +GG D C+GDSGGPL+C      GRW + G+ S GEGCAR ++PGVYT+VS+++ W+
Sbjct:   565 GYKEGGTDACKGDSGGPLVCK---HSGRWQLVGITSWGEGCARKDQPGVYTKVSEYMDWI 621

Query:   271 MSNSERAKV 279
             +  ++ + V
Sbjct:   622 LEKTQSSDV 630

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0007599 "hemostasis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0031639 "plasminogen activation" evidence=ISO

GO:0042730 "fibrinolysis" evidence=IEA

GO:0051919 "positive regulation of fibrinolysis" evidence=ISO

UNIPROTKB|P0CW18 PRSS56 "Putative serine protease 56" [Homo sapiens (taxid:9606)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 110/265 (41%), Positives = 143/265 (53%)

Query:    25 PLGARNMATDMAGNPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTA 84
             P G R  +T    N     GR+VGG  A  GAWPWL+ L   G   CGGV++  SWV+TA
Sbjct:    87 PCGERRPST---ANVTRAHGRIVGGSAAPPGAWPWLVRLQLGGQPLCGGVLVAASWVLTA 143

Query:    85 AHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPL 144
             AHC  G       ++   L   S     +  PV+RI+ H  F      NDLAL+QL  P+
Sbjct:   144 AHCFVGAPNEL--LWTVTLAEGSRGEQAEEVPVNRILPHPKFDPRTFHNDLALVQLWTPV 201

Query:   145 RYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKHYED 202
                   RP+CLP   + P   + C   GWGA+FE GP+ + +RE +VP+L    C+    
Sbjct:   202 SPGGSARPVCLPQEPQEPPAGTACAIAGWGALFEDGPEAEAVREARVPLLSTDTCRRALG 261

Query:   203 ---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGV 259
                R + ++CAG   GG D+CQGDSGGPL C  PG + R  + GV S G+GC  P +PGV
Sbjct:   262 PGLRPSTMLCAGYLAGGVDSCQGDSGGPLTCSEPGPRPREVLFGVTSWGDGCGEPGKPGV 321

Query:   260 YTRVSQFVPWL---MSNSERAKVEC 281
             YTRV+ F  WL   MS S   +  C
Sbjct:   322 YTRVAVFKDWLQEQMSASSSREPSC 346

GO:0006508 "proteolysis" evidence=ISS

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0043010 "camera-type eye development" evidence=IMP

RGD|67382 Klkb1 "kallikrein B, plasma 1" [Rattus norvegicus (taxid:10116)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 89/245 (36%), Positives = 140/245 (57%)

Query:    43 SGRVVGGKKAELGAWPWLIALYRD--GFFH-CGGVVLDESWVMTAAHCVDGFE-KHYFEV 98
             + R+VGG  + LG WPW ++L        H CGG ++   W++TAAHC DG      + +
Sbjct:   388 NARIVGGTNSSLGEWPWQVSLQVKLVSQNHMCGGSIIGRQWILTAAHCFDGIPYPDVWRI 447

Query:    99 YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV 158
             Y G+L     +       +  +++H  +K +E + D+AL++L  PL Y  + +PICLP  
Sbjct:   448 YGGILNLSEITNKTPFSSIKELIIHQKYKMSEGSYDIALIKLQTPLNYTEFQKPICLPSK 507

Query:   159 TETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDRIA--DVICAGMP 213
              +T   Y+ C   GWG   E G   + +++  +P++P   C K Y D +    +ICAG  
Sbjct:   508 ADTNTIYTNCWVTGWGYTKERGETQNILQKATIPLVPNEECQKKYRDYVITKQMICAGYK 567

Query:   214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
             +GG D C+GDSGGPL+C      GRW + G+ S GEGCAR  +PGVYT+V++++ W++  
Sbjct:   568 EGGIDACKGDSGGPLVCK---HSGRWQLVGITSWGEGCARKEQPGVYTKVAEYIDWILEK 624

Query:   274 SERAK 278
              + +K
Sbjct:   625 IQSSK 629

GO:0003674 "molecular_function" evidence=ND

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA;ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0031639 "plasminogen activation" evidence=IEA;ISO

GO:0042730 "fibrinolysis" evidence=IEA

GO:0051919 "positive regulation of fibrinolysis" evidence=IEA;ISO

UNIPROTKB|Q5FVS2 Klkb1 "RCG59057, isoform CRA_a" [Rattus norvegicus (taxid:10116)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 89/245 (36%), Positives = 140/245 (57%)

Query:    43 SGRVVGGKKAELGAWPWLIALYRD--GFFH-CGGVVLDESWVMTAAHCVDGFE-KHYFEV 98
             + R+VGG  + LG WPW ++L        H CGG ++   W++TAAHC DG      + +
Sbjct:   388 NARIVGGTNSSLGEWPWQVSLQVKLVSQNHMCGGSIIGRQWILTAAHCFDGIPYPDVWRI 447

Query:    99 YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV 158
             Y G+L     +       +  +++H  +K +E + D+AL++L  PL Y  + +PICLP  
Sbjct:   448 YGGILNLSEITNKTPFSSIKELIIHQKYKMSEGSYDIALIKLQTPLNYTEFQKPICLPSK 507

Query:   159 TETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDRIA--DVICAGMP 213
              +T   Y+ C   GWG   E G   + +++  +P++P   C K Y D +    +ICAG  
Sbjct:   508 ADTNTIYTNCWVTGWGYTKERGETQNILQKATIPLVPNEECQKKYRDYVITKQMICAGYK 567

Query:   214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
             +GG D C+GDSGGPL+C      GRW + G+ S GEGCAR  +PGVYT+V++++ W++  
Sbjct:   568 EGGIDACKGDSGGPLVCK---HSGRWQLVGITSWGEGCARKEQPGVYTKVAEYIDWILEK 624

Query:   274 SERAK 278
              + +K
Sbjct:   625 IQSSK 629

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1SMT5 LOC100737499 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 107/258 (41%), Positives = 139/258 (53%)

Query:    25 PLGARNMATDMAGNPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTA 84
             P G R+  T    N     GR+VGG  A  G+WPWL+ L   G   CGGV++  SWV+TA
Sbjct:    94 PCGERHPGTV---NVTRAHGRIVGGSAAPPGSWPWLVRLQLGGQPLCGGVLVAASWVLTA 150

Query:    85 AHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPL 144
             AHC  G +         +         E+V PV+RI+ H  F      NDLAL+QL  P+
Sbjct:   151 AHCFAGAQNELLWTVT-LAEGPRGEKAEEV-PVNRILPHPKFDPRTFHNDLALVQLWTPV 208

Query:   145 RYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPIL-P-ACKHYED 202
                   RP+CLP   + P   + C   GWGA+FE GP+ + +RE +VP+L P  C+    
Sbjct:   209 SPAGAARPVCLPQEPQEPPAGTACAIAGWGALFEDGPEAEAVREARVPLLSPDTCRRALG 268

Query:   203 ---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGV 259
                R + ++CAG   GG D+CQGDSGGPL C  PG   R  + GV S G+GC  P +PGV
Sbjct:   269 PGLRPSSMLCAGYLAGGIDSCQGDSGGPLTCSEPGPHPREVLYGVTSWGDGCGEPGKPGV 328

Query:   260 YTRVSQFVPWLMSNSERA 277
             YTRV+ F  WL      A
Sbjct:   329 YTRVAVFKDWLREQMSAA 346

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|F1NSE5 PRSS56 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 100/246 (40%), Positives = 137/246 (55%)

Query:    45 RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHY-FEVYAGML 103
             R++GG  A  GAWPWL+++   G   CGGV++  +W +TAAHC +G +    + V  G  
Sbjct:     1 RIMGGNVARHGAWPWLVSVRLHGELVCGGVLVSRAWALTAAHCFNGNQNELAWTVVVGDH 60

Query:   104 RRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE 163
                   P E+  PV RIV H  F       DLALL+LA PL  +  V P+CLP  T  P 
Sbjct:    61 ELGKADPGERAVPVRRIVPHPKFNPKTFHGDLALLELAEPLAPSGTVSPVCLPSGTTEPS 120

Query:   164 PYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDR---IADVICAGMPQGGRD 218
             P + C   GWG+++E GP  + + E QVP+L    C+    R    + + CAG   GG D
Sbjct:   121 PGTPCHIAGWGSLYEEGPSAEVVMEAQVPLLSQETCRAALGRELLTSTMFCAGYLSGGID 180

Query:   219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL---MSNSE 275
             +CQGDSGGPL+C  P S   + + G+ S G+GC    +PGVYTRV+ F  WL   M+   
Sbjct:   181 SCQGDSGGPLVCQDPSSHS-FVLYGITSWGDGCGERGKPGVYTRVAAFADWLSLQMNPGS 239

Query:   276 RAKVEC 281
             +A + C
Sbjct:   240 QAALTC 245

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

ZFIN|ZDB-GENE-091204-83 tmprss15 "transmembrane protease, serine 15" [Danio rerio (taxid:7955)]

 Score = 493 (178.6 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 97/238 (40%), Positives = 137/238 (57%)

Query:    44 GRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDG--FEKHYFEVYAG 101
             GRVVGG+ A+ GAWPW+++L   G   CG  ++D  W++TAAHCV G   +   +    G
Sbjct:   803 GRVVGGQDAQRGAWPWMVSLQWLGGHACGATLIDREWLITAAHCVYGRNVQLSNWAAVLG 862

Query:   102 MLRRF-SFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE 160
             +  +F + +P +QV  V +++MH  + +    +D AL+ L  P+ Y  YV+PICLPD   
Sbjct:   863 LHAQFETINPNKQVFSVDQVIMHKHYNKRTKESDFALMHLKTPVSYTDYVQPICLPDPGA 922

Query:   161 TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHY--EDRIAD-VICAGMPQG 215
               E    C   GWG + E G   D +++  VP+L    C+ +  E    + ++CAG  +G
Sbjct:   923 HFEEGRKCFIAGWGLLSESGLKADVLQQAVVPLLSNTQCQEWLPEYNFTERMMCAGYAEG 982

Query:   216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
             G DTCQGDSGGPL+C     +G W + G  S G GC RP  PG Y RVSQFV W+  N
Sbjct:   983 GVDTCQGDSGGPLMCE---EEGHWVLVGATSFGIGCGRPQRPGAYARVSQFVDWVAEN 1037

GO:0003824 "catalytic activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

UNIPROTKB|H0YAC1 KLKB1 "Plasma kallikrein heavy chain" [Homo sapiens (taxid:9606)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 90/242 (37%), Positives = 143/242 (59%)

Query:    43 SGRVVGGKKAELGAWPWLIALY--RDGFFH-CGGVVLDESWVMTAAHCVDGFE-KHYFEV 98
             S R+VGG  +  G WPW ++L        H CGG ++   WV+TAAHC DG   +  + +
Sbjct:   436 STRIVGGTNSSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRI 495

Query:    99 YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV 158
             Y+G+L     +       +  I++H  +K +E  +D+AL++L APL Y  + +PICLP  
Sbjct:   496 YSGILNLSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPICLPSK 555

Query:   159 TETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYED-RIAD-VICAGMP 213
              +T   Y+ C   GWG   E G   + +++V +P++    C K Y+D +I   ++CAG  
Sbjct:   556 GDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYK 615

Query:   214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
             +GG+D C+GDSGGPL+C      G W + G+ S GEGCAR  +PGVYT+V++++ W++  
Sbjct:   616 EGGKDACKGDSGGPLVCK---HNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEK 672

Query:   274 SE 275
             ++
Sbjct:   673 TQ 674

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P98159	NUDEL_DROME	3, ., 4, ., 2, 1, ., -	0.5060	0.8286	0.0905	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.766
3rd Layer	3.4.21.2	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	286
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	6e-95
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	3e-89
pfam00089	218	pfam00089, Trypsin, Trypsin	2e-67
COG5640	413	COG5640, COG5640, Secreted trypsin-like serine pro	7e-25
pfam09342	267	pfam09342, DUF1986, Domain of unknown function (DU	1e-15

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score =  279 bits (715), Expect = 6e-95
 Identities = 97/235 (41%), Positives = 133/235 (56%), Gaps = 10/235 (4%)

Query: 46  VVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           +VGG +A++G++PW ++L Y  G   CGG ++   WV+TAAHCV       + V  G   
Sbjct: 1   IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVYSSAPSNYTVRLGSHD 60

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
             S     QV  V ++++H  +  +   ND+ALL+L  P+  +  VRPICLP        
Sbjct: 61  LSSNEGGGQVIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPA 120

Query: 165 YSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRIADV----ICAGMPQGGRD 218
            +TCT  GWG   E GP PD ++EV VPI+    CK        +    +CAG  +GG+D
Sbjct: 121 GTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYSYGGTITDNMLCAGGLEGGKD 180

Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
            CQGDSGGPL+C      GR  + G+VS G GCARPN PGVYTRVS ++ W+   
Sbjct: 181 ACQGDSGGPLVC---NDNGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT 232

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score =  264 bits (678), Expect = 3e-89
 Identities = 97/233 (41%), Positives = 134/233 (57%), Gaps = 13/233 (5%)

Query: 45  RVVGGKKAELGAWPWLIALYRDGFFH-CGGVVLDESWVMTAAHCVDGFEKHYFEVYAGML 103
           R+VGG +A +G++PW ++L   G  H CGG ++   WV+TAAHCV G +     V  G  
Sbjct: 1   RIVGGSEANIGSFPWQVSLQYGGGRHFCGGSLISPRWVLTAAHCVRGSDPSNIRVRLGSH 60

Query: 104 RRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE 163
              S     QV  VS++++H  +  +   ND+ALL+L  P+  +  VRPICLP       
Sbjct: 61  DLSS-GEEGQVIKVSKVIIHPNYNPSTYDNDIALLKLKEPVTLSDNVRPICLPSSNYNVP 119

Query: 164 PYSTCTAVGWGAV-FEHGPDPDHMREVQVPILP--ACKHYEDRIADV----ICAGMPQGG 216
             +TCT  GWG      G  PD ++EV VPI+    C+        +    +CAG  +GG
Sbjct: 120 AGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSGGGAITDNMLCAGGLEGG 179

Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
           +D CQGDSGGPL+C    + GRW + G+VS G GCARP +PGVYTRVS ++ W
Sbjct: 180 KDACQGDSGGPLVC----NDGRWVLVGIVSWGSGCARPGKPGVYTRVSSYLDW 228

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score =  208 bits (531), Expect = 2e-67
 Identities = 90/230 (39%), Positives = 127/230 (55%), Gaps = 17/230 (7%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFH-CGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           +VGG +A+ G++PW ++L      H CGG ++ E+WV+TAAHCV         V  G   
Sbjct: 1   IVGGDEAQPGSFPWQVSLQVSSGKHFCGGSLISENWVLTAAHCVSN--AKSVRVVLGAHN 58

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
                  EQ   V ++++H  +   +  ND+ALL+L +P+     VRPICLP  +     
Sbjct: 59  IVLREGGEQKFDVKKVIVHPNY-NPDTDNDIALLKLKSPVTLGDTVRPICLPTASSDLPV 117

Query: 165 YSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK-HYEDRIAD-VICAGMPQGGRDTC 220
            +TCT  GWG     G  PD ++EV VP++    C+  Y   + D +ICAG   GG+D C
Sbjct: 118 GTTCTVSGWGNTKTLGL-PDTLQEVTVPVVSRETCRSAYGGTVTDNMICAGA--GGKDAC 174

Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGPL+C          + G+VS G GCA  N PGVYT VS ++ W+
Sbjct: 175 QGDSGGPLVCSDG------ELIGIVSWGYGCASGNYPGVYTPVSSYLDWI 218

Length = 218

>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

 Score =  102 bits (256), Expect = 7e-25
 Identities = 82/265 (30%), Positives = 107/265 (40%), Gaps = 43/265 (16%)

Query: 36  AGNPILGSGRVVGGKKAELGAWPWLIAL------YRDGFFHCGGVVLDESWVMTAAHCVD 89
           A      S R++GG  A  G +P L+AL      Y  G F CGG  L   +V+TAAHC D
Sbjct: 23  AQTADEVSSRIIGGSNANAGEYPSLVALVDRISDYVSGTF-CGGSKLGGRYVLTAAHCAD 81

Query: 90  G---FEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRY 146
                      V   +    + S   +   V  I +H  +    + ND+A+L+LA     
Sbjct: 82  ASSPISSDVNRVVVDL----NDSSQAERGHVRTIYVHEFYSPGNLGNDIAVLELARAASL 137

Query: 147 NRYVRPICLPDVTETPEPYST----CTAVGWGAVFEHGPDPD------HMREVQVPI--L 194
            R    I   D ++T     T     T   +G        P        + EV V    L
Sbjct: 138 PR--VKITSFDASDTFLNSVTTVSPMTNGTFGVT-TPSDVPRSSPKGTILHEVAVLFVPL 194

Query: 195 PACKHY-EDRIADV-------ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVS 246
             C  Y     A          CAG P   +D CQGDSGGP+     G +GR    GVVS
Sbjct: 195 STCAQYKGCANASDGATGLTGFCAGRP--PKDACQGDSGGPIF--HKGEEGRVQR-GVVS 249

Query: 247 HGEG-CARPNEPGVYTRVSQFVPWL 270
            G+G C     PGVYT VS +  W+
Sbjct: 250 WGDGGCGGTLIPGVYTNVSNYQDWI 274

Length = 413

>gnl|CDD|220189 pfam09342, DUF1986, Domain of unknown function (DUF1986)

 Score = 74.7 bits (183), Expect = 1e-15
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 11/120 (9%)

Query: 57  WPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDG--FEKHYFEVYAGMLR--RFSFSPTE 112
           WPW+  +Y +G + C GV++D SWV+ +  C+     E  Y  V  G  +  +    P E
Sbjct: 16  WPWIAKVYVEGNYRCTGVLIDLSWVLVSHSCLWDTSLEHSYISVVLGGHKTLKSVKGPYE 75

Query: 113 QVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVG 172
           Q+  V       + +     + ++LL L +P  ++ +V P  +P      E  + C  VG
Sbjct: 76  QIYRVD--CRKDLPR-----SKISLLHLKSPATFSNHVLPTFVPSTRNHNEKNNKCVTVG 128

This domain is found in serine proteases and is predicted to contain disulphide bonds. Length = 267

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	100.0
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	100.0
KOG3627|consensus	256		100.0
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	100.0
COG5640	413	Secreted trypsin-like serine protease [Posttransla	99.97
PF03761	282	DUF316: Domain of unknown function (DUF316) ; Inte	99.79
PF09342	267	DUF1986: Domain of unknown function (DUF1986); Int	99.61
COG3591	251	V8-like Glu-specific endopeptidase [Amino acid tra	99.22
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.62
PF13365	120	Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8	98.56
PRK10898	353	serine endoprotease; Provisional	98.51
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	98.5
PRK10139	455	serine endoprotease; Provisional	98.37
PRK10942	473	serine endoprotease; Provisional	98.31
PF02395	769	Peptidase_S6: Immunoglobulin A1 protease Serine pr	97.51
PF00863	235	Peptidase_C4: Peptidase family C4 This family belo	95.91
PF00548	172	Peptidase_C3: 3C cysteine protease (picornain 3C);	93.4
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	91.36
PF00947	127	Pico_P2A: Picornavirus core protein 2A; InterPro:	88.51
KOG1421|consensus	955		84.87

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=100.00  E-value=2e-45  Score=308.03  Aligned_cols=225  Identities=43%  Similarity=0.832  Sum_probs=192.8

Q ss_pred             eecCeeCCCCccceEEEEeeC-CeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRD-GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |+||+++..++|||+|.|+.. ..++|+||||+++||||||||+.+.....+.|++|...........+.+.|.++++||
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~~~~~~~C~GtlIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp   80 (232)
T cd00190           1 IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVYSSAPSNYTVRLGSHDLSSNEGGGQVIKVKKVIVHP   80 (232)
T ss_pred             CcCCeECCCCCCCCEEEEEccCCcEEEEEEEeeCCEEEECHHhcCCCCCccEEEEeCcccccCCCCceEEEEEEEEEECC
Confidence            679999999999999999876 6789999999999999999999876567788999987765543456788999999999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYED  202 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~~  202 (286)
                      +|+.....+|||||||++++.++.+++||||+........+..+.++|||...........++...+.+++  .|...+.
T Consensus        81 ~y~~~~~~~DiAll~L~~~~~~~~~v~picl~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  160 (232)
T cd00190          81 NYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYS  160 (232)
T ss_pred             CCCCCCCcCCEEEEEECCcccCCCcccceECCCccccCCCCCEEEEEeCCcCCCCCCCCceeeEEEeeeECHHHhhhhcc
Confidence            99998889999999999999999999999999865456677899999999876554566778888888877  5876543


Q ss_pred             ----CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhh
Q psy10841        203 ----RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN  273 (286)
Q Consensus       203 ----~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~  273 (286)
                          ..+.++|+.........|.|||||||++..   +++++|+||+|++..|.....|.+|++|++|.+||+++
T Consensus       161 ~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~---~~~~~lvGI~s~g~~c~~~~~~~~~t~v~~~~~WI~~~  232 (232)
T cd00190         161 YGGTITDNMLCAGGLEGGKDACQGDSGGPLVCND---NGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT  232 (232)
T ss_pred             CcccCCCceEeeCCCCCCCccccCCCCCcEEEEe---CCEEEEEEEEehhhccCCCCCCCEEEEcHHhhHHhhcC
Confidence                567899998654467899999999999876   58899999999999888656799999999999999864

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=100.00  E-value=3.2e-42  Score=288.61  Aligned_cols=221  Identities=43%  Similarity=0.881  Sum_probs=186.8

Q ss_pred             ceecCeeCCCCccceEEEEeeCC-eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEEC
Q psy10841         45 RVVGGKKAELGAWPWLIALYRDG-FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMH  123 (286)
Q Consensus        45 ~i~~g~~a~~~~~Pw~v~i~~~~-~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~h  123 (286)
                      ||+||+++...+|||+|.++... .+.|+||||++++|||||||+.......+.|++|........ ....+.|..+++|
T Consensus         1 ~~~~G~~~~~~~~Pw~~~i~~~~~~~~C~GtlIs~~~VLTaahC~~~~~~~~~~v~~g~~~~~~~~-~~~~~~v~~~~~~   79 (229)
T smart00020        1 RIVGGSEANIGSFPWQVSLQYRGGRHFCGGSLISPRWVLTAAHCVYGSDPSNIRVRLGSHDLSSGE-EGQVIKVSKVIIH   79 (229)
T ss_pred             CccCCCcCCCCCCCcEEEEEEcCCCcEEEEEEecCCEEEECHHHcCCCCCcceEEEeCcccCCCCC-CceEEeeEEEEEC
Confidence            58999999999999999998776 789999999999999999999876656788999977654422 2378899999999


Q ss_pred             CCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCC-CCCCCccceeEeeeecc--ccccc
Q psy10841        124 SMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFE-HGPDPDHMREVQVPILP--ACKHY  200 (286)
Q Consensus       124 p~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~-~~~~~~~l~~~~~~~~~--~c~~~  200 (286)
                      |+|+.....+|||||||++++.+++.++|+||+........+..+.++|||.... .......++...+.+.+  .|...
T Consensus        80 p~~~~~~~~~DiAll~L~~~i~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  159 (229)
T smart00020       80 PNYNPSTYDNDIALLKLKSPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRA  159 (229)
T ss_pred             CCCCCCCCcCCEEEEEECcccCCCCceeeccCCCcccccCCCCEEEEEeCCCCCCCCCcCCCEeeEEEEEEeCHHHhhhh
Confidence            9999888899999999999999999999999998644566678999999998753 23345677778888777  58765


Q ss_pred             cc----CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHH
Q psy10841        201 ED----RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL  270 (286)
Q Consensus       201 ~~----~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI  270 (286)
                      +.    ....++|+.........|.||+|+||++..   + +|+|+||++++..|...+.|.+|++|++|.+||
T Consensus       160 ~~~~~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~---~-~~~l~Gi~s~g~~C~~~~~~~~~~~i~~~~~WI  229 (229)
T smart00020      160 YSGGGAITDNMLCAGGLEGGKDACQGDSGGPLVCND---G-RWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI  229 (229)
T ss_pred             hccccccCCCcEeecCCCCCCcccCCCCCCeeEEEC---C-CEEEEEEEEECCCCCCCCCCCEEEEeccccccC
Confidence            43    567799998654467899999999999865   4 899999999999998667899999999999998

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>KOG3627|consensus

Probab=100.00  E-value=4.9e-41  Score=286.64  Aligned_cols=229  Identities=42%  Similarity=0.887  Sum_probs=188.0

Q ss_pred             CCceecCeeCCCCccceEEEEeeCC--eEEeEEEEeeCCEEEeccCCcCCC-CCceEEEEEeeeecccC-CCC--ceEEe
Q psy10841         43 SGRVVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCVDGF-EKHYFEVYAGMLRRFSF-SPT--EQVRP  116 (286)
Q Consensus        43 ~~~i~~g~~a~~~~~Pw~v~i~~~~--~~~C~GtLIs~~~VLTaAhC~~~~-~~~~~~v~~g~~~~~~~-~~~--~~~~~  116 (286)
                      ..+|+||.++..+++||++.+....  .++|+|+||+++||||||||+... .. .+.|++|....... ...  .....
T Consensus        10 ~~~i~~g~~~~~~~~Pw~~~l~~~~~~~~~Cggsli~~~~vltaaHC~~~~~~~-~~~V~~G~~~~~~~~~~~~~~~~~~   88 (256)
T KOG3627|consen   10 EGRIVGGTEAEPGSFPWQVSLQYGGNGRHLCGGSLISPRWVLTAAHCVKGASAS-LYTVRLGEHDINLSVSEGEEQLVGD   88 (256)
T ss_pred             cCCEeCCccCCCCCCCCEEEEEECCCcceeeeeEEeeCCEEEEChhhCCCCCCc-ceEEEECccccccccccCchhhhce
Confidence            5699999999999999999998765  689999999999999999999774 23 67888887644332 112  24455


Q ss_pred             eeEEEECCCCCCCCCC-CceEEEEecCccccCCceeeeecCCCCC--CCCCCCceEEEEecccCCC-CCCCccceeEeee
Q psy10841        117 VSRIVMHSMFKRAEMT-NDLALLQLAAPLRYNRYVRPICLPDVTE--TPEPYSTCTAVGWGAVFEH-GPDPDHMREVQVP  192 (286)
Q Consensus       117 v~~~~~hp~y~~~~~~-~DiAllkL~~~i~~~~~v~picL~~~~~--~~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~~  192 (286)
                      +.++++||+|+..... +|||||+|.+++.|++.++|||||....  ....+..+.++|||.+... ......+++..++
T Consensus        89 v~~~i~H~~y~~~~~~~nDiall~l~~~v~~~~~i~piclp~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~  168 (256)
T KOG3627|consen   89 VEKIIVHPNYNPRTLENNDIALLRLSEPVTFSSHIQPICLPSSADPYFPPGGTTCLVSGWGRTESGGGPLPDTLQEVDVP  168 (256)
T ss_pred             eeEEEECCCCCCCCCCCCCEEEEEECCCcccCCcccccCCCCCcccCCCCCCCEEEEEeCCCcCCCCCCCCceeEEEEEe
Confidence            7788899999998877 9999999999999999999999986443  2455588999999987543 2456788888888


Q ss_pred             ecc--ccccccc----CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCC-CCCCCCCeeEEeCCC
Q psy10841        193 ILP--ACKHYED----RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQ  265 (286)
Q Consensus       193 ~~~--~c~~~~~----~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~-c~~~~~p~v~t~v~~  265 (286)
                      +++  +|...+.    ....++|++......++|.|||||||++...   ++++++||+|||.. |.....|++|++|+.
T Consensus       169 i~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGGPLv~~~~---~~~~~~GivS~G~~~C~~~~~P~vyt~V~~  245 (256)
T KOG3627|consen  169 IISNSECRRAYGGLGTITDTMLCAGGPEGGKDACQGDSGGPLVCEDN---GRWVLVGIVSWGSGGCGQPNYPGVYTRVSS  245 (256)
T ss_pred             EcChhHhcccccCccccCCCEEeeCccCCCCccccCCCCCeEEEeeC---CcEEEEEEEEecCCCCCCCCCCeEEeEhHH
Confidence            888  5877664    3356899986556677899999999999873   38999999999997 998778999999999


Q ss_pred             cHHHHHhhhc
Q psy10841        266 FVPWLMSNSE  275 (286)
Q Consensus       266 ~~~WI~~~~~  275 (286)
                      |.+||++.+.
T Consensus       246 y~~WI~~~~~  255 (256)
T KOG3627|consen  246 YLDWIKENIG  255 (256)
T ss_pred             hHHHHHHHhc
Confidence            9999999875

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=5.4e-40  Score=273.07  Aligned_cols=215  Identities=40%  Similarity=0.866  Sum_probs=181.8

Q ss_pred             eecCeeCCCCccceEEEEeeCC-eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDG-FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~-~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |.||+++..++|||+|.++... .++|+|+||+++||||||||+..  ...+.+.+|...........+.+.|++++.||
T Consensus         1 i~~g~~~~~~~~p~~v~i~~~~~~~~C~G~li~~~~vLTaahC~~~--~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~h~   78 (220)
T PF00089_consen    1 IVGGDPASPGEFPWVVSIRYSNGRFFCTGTLISPRWVLTAAHCVDG--ASDIKVRLGTYSIRNSDGSEQTIKVSKIIIHP   78 (220)
T ss_dssp             SBSSEECGTTSSTTEEEEEETTTEEEEEEEEEETTEEEEEGGGHTS--GGSEEEEESESBTTSTTTTSEEEEEEEEEEET
T ss_pred             CCCCEECCCCCCCeEEEEeeCCCCeeEeEEeccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence            6899999999999999999877 89999999999999999999977  45678888874444434446889999999999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccccc-
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYE-  201 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~-  201 (286)
                      +|+.....+|||||||++++.+.+.++|+||+........+..+.++||+.....+ ....++...+.+.+  .|...+ 
T Consensus        79 ~~~~~~~~~DiAll~L~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~~~  157 (220)
T PF00089_consen   79 KYDPSTYDNDIALLKLDRPITFGDNIQPICLPSAGSDPNVGTSCIVVGWGRTSDNG-YSSNLQSVTVPVVSRKTCRSSYN  157 (220)
T ss_dssp             TSBTTTTTTSEEEEEESSSSEHBSSBEESBBTSTTHTTTTTSEEEEEESSBSSTTS-BTSBEEEEEEEEEEHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence            99998889999999999999999999999999854445677899999999865444 44567777777766  477643 


Q ss_pred             -cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHH
Q psy10841        202 -DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL  270 (286)
Q Consensus       202 -~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI  270 (286)
                       .....++|+... .....|.|||||||++...      +|+||++++..|...+.|.+|++|+.|++||
T Consensus       158 ~~~~~~~~c~~~~-~~~~~~~g~sG~pl~~~~~------~lvGI~s~~~~c~~~~~~~v~~~v~~~~~WI  220 (220)
T PF00089_consen  158 DNLTPNMICAGSS-GSGDACQGDSGGPLICNNN------YLVGIVSFGENCGSPNYPGVYTRVSSYLDWI  220 (220)
T ss_dssp             TTSTTTEEEEETT-SSSBGGTTTTTSEEEETTE------EEEEEEEEESSSSBTTSEEEEEEGGGGHHHH
T ss_pred             ccccccccccccc-cccccccccccccccccee------eecceeeecCCCCCCCcCEEEEEHHHhhccC
Confidence             256789999864 5578999999999997541      8999999999999877899999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.5e-31  Score=220.89  Aligned_cols=227  Identities=32%  Similarity=0.536  Sum_probs=164.1

Q ss_pred             CCceecCeeCCCCccceEEEEeeC-----CeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEee
Q psy10841         43 SGRVVGGKKAELGAWPWLIALYRD-----GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPV  117 (286)
Q Consensus        43 ~~~i~~g~~a~~~~~Pw~v~i~~~-----~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v  117 (286)
                      +.||+||+.|..++||++|++...     +..+|+|+++..|||||||||+....+-...+..+..+..+.. ..+..++
T Consensus        30 s~rIigGs~Anag~~P~~VaLv~~isd~~s~tfCGgs~l~~RYvLTAAHC~~~~s~is~d~~~vv~~l~d~S-q~~rg~v  108 (413)
T COG5640          30 SSRIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASSPISSDVNRVVVDLNDSS-QAERGHV  108 (413)
T ss_pred             ceeEecCcccccccCchHHHHHhhcccccceeEeccceecceEEeeehhhccCCCCccccceEEEecccccc-cccCcce
Confidence            579999999999999999998532     3468999999999999999999776543333444444444422 5677889


Q ss_pred             eEEEECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCC----CCCCCCceEEEEecccCCC---CCC--Ccccee
Q psy10841        118 SRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE----TPEPYSTCTAVGWGAVFEH---GPD--PDHMRE  188 (286)
Q Consensus       118 ~~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~----~~~~~~~~~~~Gwg~~~~~---~~~--~~~l~~  188 (286)
                      +.+++|..|.+..+.||+|+++|.++..... + .+......+    ........+..+|+.+...   ...  ...+++
T Consensus       109 r~i~~~efY~~~n~~ND~Av~~l~~~a~~pr-~-ki~~~~~sdt~l~sv~~~s~~~n~t~~~~~~~~v~~~~p~gt~l~e  186 (413)
T COG5640         109 RTIYVHEFYSPGNLGNDIAVLELARAASLPR-V-KITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILHE  186 (413)
T ss_pred             EEEeeecccccccccCcceeeccccccccch-h-heeeccCcccceecccccccccceeeeeeeecCCCCCCCccceeee
Confidence            9999999999999999999999998664321 0 111111111    1222344566677765322   111  246777


Q ss_pred             Eeeeecc--ccccccc--------CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCC-CCCCCCC
Q psy10841        189 VQVPILP--ACKHYED--------RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEP  257 (286)
Q Consensus       189 ~~~~~~~--~c~~~~~--------~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~-c~~~~~p  257 (286)
                      ..+...+  .|...+.        ..-.-+|++.+  ..+.|+||||||++...   +..+.++||+|||.+ |+.+..|
T Consensus       187 ~~v~fv~~stc~~~~g~an~~dg~~~lT~~cag~~--~~daCqGDSGGPi~~~g---~~G~vQ~GVvSwG~~~Cg~t~~~  261 (413)
T COG5640         187 VAVLFVPLSTCAQYKGCANASDGATGLTGFCAGRP--PKDACQGDSGGPIFHKG---EEGRVQRGVVSWGDGGCGGTLIP  261 (413)
T ss_pred             eeeeeechHHhhhhccccccCCCCCCccceecCCC--CcccccCCCCCceEEeC---CCccEEEeEEEecCCCCCCCCcc
Confidence            7777776  4665442        11223999854  47899999999999765   566789999999995 9999999


Q ss_pred             eeEEeCCCcHHHHHhhhccc
Q psy10841        258 GVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       258 ~v~t~v~~~~~WI~~~~~~~  277 (286)
                      .|||+|+.|.+||...++.-
T Consensus       262 gVyT~vsny~~WI~a~~~~l  281 (413)
T COG5640         262 GVYTNVSNYQDWIAAMTNGL  281 (413)
T ss_pred             eeEEehhHHHHHHHHHhcCC
Confidence            99999999999999987543

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans

Probab=99.79  E-value=1.1e-17  Score=144.56  Aligned_cols=218  Identities=21%  Similarity=0.406  Sum_probs=138.2

Q ss_pred             cCCCCCC-ccCCCceecCeeCCCCccceEEEEeeCC----eEEeEEEEeeCCEEEeccCCcCCCCCc-------------
Q psy10841         33 TDMAGNP-ILGSGRVVGGKKAELGAWPWLIALYRDG----FFHCGGVVLDESWVMTAAHCVDGFEKH-------------   94 (286)
Q Consensus        33 ~~~~~~~-~~~~~~i~~g~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTaAhC~~~~~~~-------------   94 (286)
                      -+.||.. ...+.++.+|..+...+.||+|.+...+    .++++|||||+|||||++||+......             
T Consensus        28 l~~CG~~~~~~~~~~~~g~~~~~~~~pW~v~v~~~~~~~~~~~~~gtlIS~RHiLtss~~~~~~~~~W~~~~~~~~~~C~  107 (282)
T PF03761_consen   28 LETCGKKKLPYPSKVFNGTPAESGEAPWAVSVYTKNHNEGNYFSTGTLISPRHILTSSHCVMNDKSKWLNGEEFDNKKCE  107 (282)
T ss_pred             HHhcCCCCCCCcccccCCcccccCCCCCEEEEEeccCcccceecceEEeccCeEEEeeeEEEecccccccCcccccceee
Confidence            4567744 3345678999999999999999997543    356899999999999999998632210             


Q ss_pred             ----eEEE---EEeeeec----ccCCCCceEEeeeEEEECC----CCCCCCCCCceEEEEecCccccCCceeeeecCCCC
Q psy10841         95 ----YFEV---YAGMLRR----FSFSPTEQVRPVSRIVMHS----MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVT  159 (286)
Q Consensus        95 ----~~~v---~~g~~~~----~~~~~~~~~~~v~~~~~hp----~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~  159 (286)
                          .+.|   .+-....    ..........++.++++--    ........++++||+|+++  +.....|+||+...
T Consensus       108 ~~~~~l~vP~~~l~~~~v~~~~~~~~~~~~~~~v~ka~il~~C~~~~~~~~~~~~~mIlEl~~~--~~~~~~~~Cl~~~~  185 (282)
T PF03761_consen  108 GNNNHLIVPEEVLSKIDVRCCNCFSNGKCFSIKVKKAYILNGCKKIKKNFNRPYSPMILELEED--FSKNVSPPCLADSS  185 (282)
T ss_pred             CCCceEEeCHHHhccEEEEeecccccCCcccceeEEEEEEecCCCcccccccccceEEEEEccc--ccccCCCEEeCCCc
Confidence                0000   0000000    0000111224455554421    1123345689999999998  67889999999876


Q ss_pred             CCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccccCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcE
Q psy10841        160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRW  239 (286)
Q Consensus       160 ~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~  239 (286)
                      .....+..+.++|+.       ....+....+.+.. |..         |..........|.+|+||||+...   ++++
T Consensus       186 ~~~~~~~~~~~yg~~-------~~~~~~~~~~~i~~-~~~---------~~~~~~~~~~~~~~d~Gg~lv~~~---~gr~  245 (282)
T PF03761_consen  186 TNWEKGDEVDVYGFN-------STGKLKHRKLKITN-CTK---------CAYSICTKQYSCKGDRGGPLVKNI---NGRW  245 (282)
T ss_pred             cccccCceEEEeecC-------CCCeEEEEEEEEEE-eec---------cceeEecccccCCCCccCeEEEEE---CCCE
Confidence            666667777777771       11223333333332 211         221112345789999999999777   8999


Q ss_pred             EEEEEEEecC-CCCCCCCCeeEEeCCCcHHHHHhhh
Q psy10841        240 YVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSNS  274 (286)
Q Consensus       240 ~lvGI~s~~~-~c~~~~~p~v~t~v~~~~~WI~~~~  274 (286)
                      +|+||.+.+. .|..  ....|.+|..|.+=|-+.+
T Consensus       246 tlIGv~~~~~~~~~~--~~~~f~~v~~~~~~IC~lt  279 (282)
T PF03761_consen  246 TLIGVGASGNYECNK--NNSYFFNVSWYQDEICELT  279 (282)
T ss_pred             EEEEEEccCCCcccc--cccEEEEHHHhhhhhccce
Confidence            9999998776 3432  2678999998877665543

>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.61  E-value=4.7e-14  Score=114.13  Aligned_cols=116  Identities=33%  Similarity=0.670  Sum_probs=92.6

Q ss_pred             CCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCC--ceEEEEEeeeec--ccCCCCceEEeeeEEEECCCCCC
Q psy10841         53 ELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK--HYFEVYAGMLRR--FSFSPTEQVRPVSRIVMHSMFKR  128 (286)
Q Consensus        53 ~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~--~~~~v~~g~~~~--~~~~~~~~~~~v~~~~~hp~y~~  128 (286)
                      ....|||++.|+.++.+.|+|+||.++|||++..|+.+...  ..+.+++|....  +...+.+|.++|..+..=|    
T Consensus        12 e~y~WPWlA~IYvdG~~~CsgvLlD~~WlLvsssCl~~I~L~~~YvsallG~~Kt~~~v~Gp~EQI~rVD~~~~V~----   87 (267)
T PF09342_consen   12 EDYHWPWLADIYVDGRYWCSGVLLDPHWLLVSSSCLRGISLSHHYVSALLGGGKTYLSVDGPHEQISRVDCFKDVP----   87 (267)
T ss_pred             ccccCcceeeEEEcCeEEEEEEEeccceEEEeccccCCcccccceEEEEecCcceecccCCChheEEEeeeeeecc----
Confidence            34579999999999999999999999999999999976443  677888886542  2344567777777653322    


Q ss_pred             CCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecc
Q psy10841        129 AEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGA  175 (286)
Q Consensus       129 ~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~  175 (286)
                         ..+++||.|++|+.|+.+|+|..||...........|..+|-..
T Consensus        88 ---~S~v~LLHL~~~~~fTr~VlP~flp~~~~~~~~~~~CVAVg~d~  131 (267)
T PF09342_consen   88 ---ESNVLLLHLEQPANFTRYVLPTFLPETSNENESDDECVAVGHDD  131 (267)
T ss_pred             ---ccceeeeeecCcccceeeecccccccccCCCCCCCceEEEEccc
Confidence               47899999999999999999999997555566667898888643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

Probab=99.22  E-value=1.3e-10  Score=96.45  Aligned_cols=197  Identities=17%  Similarity=0.224  Sum_probs=108.0

Q ss_pred             CCCCccceEEEEee---CCeEEeEEEEeeCCEEEeccCCcCCCCCce--EEEEE-eeeecccCCCCceEEee--eEEEEC
Q psy10841         52 AELGAWPWLIALYR---DGFFHCGGVVLDESWVMTAAHCVDGFEKHY--FEVYA-GMLRRFSFSPTEQVRPV--SRIVMH  123 (286)
Q Consensus        52 a~~~~~Pw~v~i~~---~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~--~~v~~-g~~~~~~~~~~~~~~~v--~~~~~h  123 (286)
                      ....+|||-+-...   .+.+-|+++||+++.|||++||+.+...+.  +.+.. |..     ........+  ....+.
T Consensus        44 ~dt~~~Py~av~~~~~~tG~~~~~~~lI~pntvLTa~Hc~~s~~~G~~~~~~~p~g~~-----~~~~~~~~~~~~~~~~~  118 (251)
T COG3591          44 TDTTQFPYSAVVQFEAATGRLCTAATLIGPNTVLTAGHCIYSPDYGEDDIAAAPPGVN-----SDGGPFYGITKIEIRVY  118 (251)
T ss_pred             ccCCCCCcceeEEeecCCCcceeeEEEEcCceEEEeeeEEecCCCChhhhhhcCCccc-----CCCCCCCceeeEEEEec
Confidence            34568999876643   234557779999999999999997765432  11221 111     112222222  222223


Q ss_pred             C--CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccc
Q psy10841        124 S--MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE  201 (286)
Q Consensus       124 p--~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~  201 (286)
                      |  .|.......|+..++|+....+........++.... ...++...+.||-......   ....+       .|..-.
T Consensus       119 ~g~~~~~d~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~d~i~v~GYP~dk~~~---~~~~e-------~t~~v~  187 (251)
T COG3591         119 PGELYKEDGASYDVGEAALESGINIGDVVNYLKRNTASE-AKANDRITVIGYPGDKPNI---GTMWE-------STGKVN  187 (251)
T ss_pred             CCceeccCCceeeccHHHhccCCCccccccccccccccc-cccCceeEEEeccCCCCcc---eeEee-------ecceeE
Confidence            3  234445567777777774444444444334433223 3344558889986443210   11111       111111


Q ss_pred             cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeC-CCcHHHHHhhhc
Q psy10841        202 DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRV-SQFVPWLMSNSE  275 (286)
Q Consensus       202 ~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v-~~~~~WI~~~~~  275 (286)
                      ......+     ....+++.|+||+|++...   +   +++||..-+..-.+.....-.+|+ ..+++||++.++
T Consensus       188 ~~~~~~l-----~y~~dT~pG~SGSpv~~~~---~---~vigv~~~g~~~~~~~~~n~~vr~t~~~~~~I~~~~~  251 (251)
T COG3591         188 SIKGNKL-----FYDADTLPGSSGSPVLISK---D---EVIGVHYNGPGANGGSLANNAVRLTPEILNFIQQNIK  251 (251)
T ss_pred             EEecceE-----EEEecccCCCCCCceEecC---c---eEEEEEecCCCcccccccCcceEecHHHHHHHHHhhC
Confidence            1111111     2245789999999999543   1   799999988753322334556666 446799988764

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.62  E-value=2.2e-06  Score=78.51  Aligned_cols=166  Identities=20%  Similarity=0.162  Sum_probs=91.1

Q ss_pred             eEEeEEEEeeCC-EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCcccc
Q psy10841         68 FFHCGGVVLDES-WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRY  146 (286)
Q Consensus        68 ~~~C~GtLIs~~-~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~  146 (286)
                      ...++|.+|+++ +|||++|++.+..  .+.|.+.         ....+..+-+..++       ..|+||||++.+   
T Consensus        57 ~~~GSGfii~~~G~IlTn~Hvv~~~~--~i~V~~~---------~~~~~~a~vv~~d~-------~~DlAllkv~~~---  115 (428)
T TIGR02037        57 RGLGSGVIISADGYILTNNHVVDGAD--EITVTLS---------DGREFKAKLVGKDP-------RTDIAVLKIDAK---  115 (428)
T ss_pred             cceeeEEEECCCCEEEEcHHHcCCCC--eEEEEeC---------CCCEEEEEEEEecC-------CCCEEEEEecCC---
Confidence            467999999987 9999999997643  4555443         12334444333333       479999999864   


Q ss_pred             CCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeeccccccc-cc--CCCCEEEEeeCCCCCCCCCCC
Q psy10841        147 NRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHY-ED--RIADVICAGMPQGGRDTCQGD  223 (286)
Q Consensus       147 ~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~-~~--~~~~~~C~~~~~~~~~~c~gd  223 (286)
                       ..+.++.|... .....++.+.++|+......     .   ...-+++..... ..  .....+     ..+...-.|.
T Consensus       116 -~~~~~~~l~~~-~~~~~G~~v~aiG~p~g~~~-----~---~t~G~vs~~~~~~~~~~~~~~~i-----~tda~i~~Gn  180 (428)
T TIGR02037       116 -KNLPVIKLGDS-DKLRVGDWVLAIGNPFGLGQ-----T---VTSGIVSALGRSGLGIGDYENFI-----QTDAAINPGN  180 (428)
T ss_pred             -CCceEEEccCC-CCCCCCCEEEEEECCCcCCC-----c---EEEEEEEecccCccCCCCccceE-----EECCCCCCCC
Confidence             34567777653 34577899999998532111     1   111111110000 00  001111     1233566799


Q ss_pred             CCCeeeeecCCCCCcEEEEEEEEecCC-CCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        224 SGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       224 sGgPL~~~~~~~~~~~~lvGI~s~~~~-c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                      |||||+-.      .-.++||.+.... .+.....+.+..+......+++.++
T Consensus       181 SGGpl~n~------~G~viGI~~~~~~~~g~~~g~~faiP~~~~~~~~~~l~~  227 (428)
T TIGR02037       181 SGGPLVNL------RGEVIGINTAIYSPSGGNVGIGFAIPSNMAKNVVDQLIE  227 (428)
T ss_pred             CCCceECC------CCeEEEEEeEEEcCCCCccceEEEEEhHHHHHHHHHHHh
Confidence            99999832      2249999876431 1111112334445444555555444

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A

Probab=98.56  E-value=4.7e-07  Score=67.42  Aligned_cols=21  Identities=29%  Similarity=0.658  Sum_probs=19.4

Q ss_pred             eEEEEeeCC-EEEeccCCcCCC
Q psy10841         71 CGGVVLDES-WVMTAAHCVDGF   91 (286)
Q Consensus        71 C~GtLIs~~-~VLTaAhC~~~~   91 (286)
                      |+|.+|.++ +|||++||+...
T Consensus         1 GTGf~i~~~g~ilT~~Hvv~~~   22 (120)
T PF13365_consen    1 GTGFLIGPDGYILTAAHVVEDW   22 (120)
T ss_dssp             EEEEEEETTTEEEEEHHHHTCC
T ss_pred             CEEEEEcCCceEEEchhheecc
Confidence            799999999 999999999764

...

>PRK10898 serine endoprotease; Provisional

Probab=98.51  E-value=1.3e-05  Score=71.32  Aligned_cols=150  Identities=18%  Similarity=0.212  Sum_probs=83.9

Q ss_pred             cceEEEEeeCC-----------eEEeEEEEeeCC-EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         57 WPWLIALYRDG-----------FFHCGGVVLDES-WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        57 ~Pw~v~i~~~~-----------~~~C~GtLIs~~-~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      -|-+|.|....           ....+|.+|+++ +|||.+|-+.+.  ..+.|.+.         ....+..+-+..+|
T Consensus        55 ~psvV~v~~~~~~~~~~~~~~~~~~GSGfvi~~~G~IlTn~HVv~~a--~~i~V~~~---------dg~~~~a~vv~~d~  123 (353)
T PRK10898         55 APAVVNVYNRSLNSTSHNQLEIRTLGSGVIMDQRGYILTNKHVINDA--DQIIVALQ---------DGRVFEALLVGSDS  123 (353)
T ss_pred             CCcEEEEEeEeccccCcccccccceeeEEEEeCCeEEEecccEeCCC--CEEEEEeC---------CCCEEEEEEEEEcC
Confidence            47777775321           256999999986 999999999653  34555442         12334444343333


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc-ccccccc-
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP-ACKHYED-  202 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~-~c~~~~~-  202 (286)
                             ..|+||||++.. .    +.++.|... .....++.+..+|+.......        ...-+++ ....... 
T Consensus       124 -------~~DlAvl~v~~~-~----l~~~~l~~~-~~~~~G~~V~aiG~P~g~~~~--------~t~Giis~~~r~~~~~  182 (353)
T PRK10898        124 -------LTDLAVLKINAT-N----LPVIPINPK-RVPHIGDVVLAIGNPYNLGQT--------ITQGIISATGRIGLSP  182 (353)
T ss_pred             -------CCCEEEEEEcCC-C----CCeeeccCc-CcCCCCCEEEEEeCCCCcCCC--------cceeEEEeccccccCC
Confidence                   489999999753 1    334455332 345678888888885321110        1111111 0000000 


Q ss_pred             CC-CCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC
Q psy10841        203 RI-ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE  249 (286)
Q Consensus       203 ~~-~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~  249 (286)
                      .. ...+     ..+.....|.|||||+-      ..-.++||.+...
T Consensus       183 ~~~~~~i-----qtda~i~~GnSGGPl~n------~~G~vvGI~~~~~  219 (353)
T PRK10898        183 TGRQNFL-----QTDASINHGNSGGALVN------SLGELMGINTLSF  219 (353)
T ss_pred             ccccceE-----EeccccCCCCCcceEEC------CCCeEEEEEEEEe
Confidence            00 1111     12345678999999993      2234999988654

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=98.50  E-value=7.6e-06  Score=72.91  Aligned_cols=152  Identities=16%  Similarity=0.167  Sum_probs=85.3

Q ss_pred             ccceEEEEeeC-----------CeEEeEEEEeeCC-EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEEC
Q psy10841         56 AWPWLIALYRD-----------GFFHCGGVVLDES-WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMH  123 (286)
Q Consensus        56 ~~Pw~v~i~~~-----------~~~~C~GtLIs~~-~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~h  123 (286)
                      --|-+|.|...           ....++|.+|+++ +|||++|.+.+.  +.+.|.+.         ....+..+-+..+
T Consensus        54 ~~psVV~I~~~~~~~~~~~~~~~~~~GSG~vi~~~G~IlTn~HVV~~~--~~i~V~~~---------dg~~~~a~vv~~d  122 (351)
T TIGR02038        54 AAPAVVNIYNRSISQNSLNQLSIQGLGSGVIMSKEGYILTNYHVIKKA--DQIVVALQ---------DGRKFEAELVGSD  122 (351)
T ss_pred             cCCcEEEEEeEeccccccccccccceEEEEEEeCCeEEEecccEeCCC--CEEEEEEC---------CCCEEEEEEEEec
Confidence            34778877531           1246999999987 999999999653  34445442         1233444433333


Q ss_pred             CCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccc-ccccc
Q psy10841        124 SMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPAC-KHYED  202 (286)
Q Consensus       124 p~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c-~~~~~  202 (286)
                      |       ..|+||||++.+-     +.++.|.. ......++.+.++|+......        ....-+++.- .....
T Consensus       123 ~-------~~DlAvlkv~~~~-----~~~~~l~~-s~~~~~G~~V~aiG~P~~~~~--------s~t~GiIs~~~r~~~~  181 (351)
T TIGR02038       123 P-------LTDLAVLKIEGDN-----LPTIPVNL-DRPPHVGDVVLAIGNPYNLGQ--------TITQGIISATGRNGLS  181 (351)
T ss_pred             C-------CCCEEEEEecCCC-----CceEeccC-cCccCCCCEEEEEeCCCCCCC--------cEEEEEEEeccCcccC
Confidence            3       4799999997542     33445533 235678899999998532111        1111111110 00000


Q ss_pred             C-CCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC
Q psy10841        203 R-IADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE  249 (286)
Q Consensus       203 ~-~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~  249 (286)
                      . ....+ .   ..+.....|.|||||+-      .+-.++||.+...
T Consensus       182 ~~~~~~~-i---qtda~i~~GnSGGpl~n------~~G~vIGI~~~~~  219 (351)
T TIGR02038       182 SVGRQNF-I---QTDAAINAGNSGGALIN------TNGELVGINTASF  219 (351)
T ss_pred             CCCcceE-E---EECCccCCCCCcceEEC------CCCeEEEEEeeee
Confidence            0 00111 1   12345678999999992      2234999987643

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10139 serine endoprotease; Provisional

Probab=98.37  E-value=3.9e-05  Score=70.62  Aligned_cols=166  Identities=18%  Similarity=0.157  Sum_probs=91.7

Q ss_pred             eEEeEEEEeeC--CEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccc
Q psy10841         68 FFHCGGVVLDE--SWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLR  145 (286)
Q Consensus        68 ~~~C~GtLIs~--~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~  145 (286)
                      ....+|.+|++  -+|||.+|.+.+.  ..+.|.+.         ....+..+-+...|       ..||||||++.+- 
T Consensus        89 ~~~GSG~ii~~~~g~IlTn~HVv~~a--~~i~V~~~---------dg~~~~a~vvg~D~-------~~DlAvlkv~~~~-  149 (455)
T PRK10139         89 EGLGSGVIIDAAKGYVLTNNHVINQA--QKISIQLN---------DGREFDAKLIGSDD-------QSDIALLQIQNPS-  149 (455)
T ss_pred             cceEEEEEEECCCCEEEeChHHhCCC--CEEEEEEC---------CCCEEEEEEEEEcC-------CCCEEEEEecCCC-
Confidence            35799999984  5999999999764  35566553         22344444443333       4799999997542 


Q ss_pred             cCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeeccccccc-ccC--CCCEEEEeeCCCCCCCCCC
Q psy10841        146 YNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHY-EDR--IADVICAGMPQGGRDTCQG  222 (286)
Q Consensus       146 ~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~-~~~--~~~~~C~~~~~~~~~~c~g  222 (286)
                         .+.++.|... .....++.+..+|+.....        .....-+++..... ...  ....+     ..+.....|
T Consensus       150 ---~l~~~~lg~s-~~~~~G~~V~aiG~P~g~~--------~tvt~GivS~~~r~~~~~~~~~~~i-----qtda~in~G  212 (455)
T PRK10139        150 ---KLTQIAIADS-DKLRVGDFAVAVGNPFGLG--------QTATSGIISALGRSGLNLEGLENFI-----QTDASINRG  212 (455)
T ss_pred             ---CCceeEecCc-cccCCCCEEEEEecCCCCC--------CceEEEEEccccccccCCCCcceEE-----EECCccCCC
Confidence               2456677543 3466788898888742211        11222333321111 110  01112     223566789


Q ss_pred             CCCCeeeeecCCCCCcEEEEEEEEecCCCC-CCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        223 DSGGPLLCPVPGSQGRWYVAGVVSHGEGCA-RPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       223 dsGgPL~~~~~~~~~~~~lvGI~s~~~~c~-~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                      .|||||+-      .+-.++||.+....-. .....+...-+......+++.++
T Consensus       213 nSGGpl~n------~~G~vIGi~~~~~~~~~~~~gigfaIP~~~~~~v~~~l~~  260 (455)
T PRK10139        213 NSGGALLN------LNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLID  260 (455)
T ss_pred             CCcceEEC------CCCeEEEEEEEEEcCCCCccceEEEEEhHHHHHHHHHHhh
Confidence            99999993      2234999998643211 11112334444444445555444

>PRK10942 serine endoprotease; Provisional

Probab=98.31  E-value=3.3e-05  Score=71.46  Aligned_cols=139  Identities=22%  Similarity=0.237  Sum_probs=78.6

Q ss_pred             eEEeEEEEeeC--CEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccc
Q psy10841         68 FFHCGGVVLDE--SWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLR  145 (286)
Q Consensus        68 ~~~C~GtLIs~--~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~  145 (286)
                      ....+|.+|+.  -+|||.+|.+.+.  ..+.|.+.         ....+..+-+..+|       ..||||||++.+- 
T Consensus       110 ~~~GSG~ii~~~~G~IlTn~HVv~~a--~~i~V~~~---------dg~~~~a~vv~~D~-------~~DlAvlki~~~~-  170 (473)
T PRK10942        110 MALGSGVIIDADKGYVVTNNHVVDNA--TKIKVQLS---------DGRKFDAKVVGKDP-------RSDIALIQLQNPK-  170 (473)
T ss_pred             cceEEEEEEECCCCEEEeChhhcCCC--CEEEEEEC---------CCCEEEEEEEEecC-------CCCEEEEEecCCC-
Confidence            35799999986  4999999999654  35556553         12334444344343       4799999997432 


Q ss_pred             cCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeeccccccc-ccC--CCCEEEEeeCCCCCCCCCC
Q psy10841        146 YNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHY-EDR--IADVICAGMPQGGRDTCQG  222 (286)
Q Consensus       146 ~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~-~~~--~~~~~C~~~~~~~~~~c~g  222 (286)
                         .+.++.|... .....++.++.+|+......        .+..-+++..... ...  ....+     ..+.....|
T Consensus       171 ---~l~~~~lg~s-~~l~~G~~V~aiG~P~g~~~--------tvt~GiVs~~~r~~~~~~~~~~~i-----qtda~i~~G  233 (473)
T PRK10942        171 ---NLTAIKMADS-DALRVGDYTVAIGNPYGLGE--------TVTSGIVSALGRSGLNVENYENFI-----QTDAAINRG  233 (473)
T ss_pred             ---CCceeEecCc-cccCCCCEEEEEcCCCCCCc--------ceeEEEEEEeecccCCcccccceE-----EeccccCCC
Confidence               2456667542 34677888888886421110        1111222210000 000  01111     123455689


Q ss_pred             CCCCeeeeecCCCCCcEEEEEEEEec
Q psy10841        223 DSGGPLLCPVPGSQGRWYVAGVVSHG  248 (286)
Q Consensus       223 dsGgPL~~~~~~~~~~~~lvGI~s~~  248 (286)
                      .|||||+.      ..-.++||.+..
T Consensus       234 nSGGpL~n------~~GeviGI~t~~  253 (473)
T PRK10942        234 NSGGALVN------LNGELIGINTAI  253 (473)
T ss_pred             CCcCccCC------CCCeEEEEEEEE
Confidence            99999993      223599998764

>PF02395 Peptidase_S6: Immunoglobulin A1 protease Serine protease Prosite pattern; InterPro: IPR000710 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.51  E-value=0.00044  Score=67.02  Aligned_cols=159  Identities=18%  Similarity=0.243  Sum_probs=72.9

Q ss_pred             EEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccccCCcee
Q psy10841         72 GGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVR  151 (286)
Q Consensus        72 ~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~  151 (286)
                      ..|||+|++|+|++|-.....    .|.+|...       ...+++...-.|+.       .|+.+-||++-+.   .+.
T Consensus        68 ~aTLigpqYiVSV~HN~~gy~----~v~FG~~g-------~~~Y~iV~RNn~~~-------~Df~~pRLnK~VT---Eva  126 (769)
T PF02395_consen   68 VATLIGPQYIVSVKHNGKGYN----SVSFGNEG-------QNTYKIVDRNNYPS-------GDFHMPRLNKFVT---EVA  126 (769)
T ss_dssp             S-EEEETTEEEBETTG-TSCC----EECESCSS-------TCEEEEEEEEBETT-------STEBEEEESS------SS-
T ss_pred             eEEEecCCeEEEEEccCCCcC----ceeecccC-------CceEEEEEccCCCC-------cccceeecCceEE---EEe
Confidence            489999999999999873322    46666422       25566666666654       6999999998663   356


Q ss_pred             eeecCCCCC------CCCCCCceEEEEecccCCCCCCCccceeEe--eeecc--c-ccccccCCCCEEEEeeC-------
Q psy10841        152 PICLPDVTE------TPEPYSTCTAVGWGAVFEHGPDPDHMREVQ--VPILP--A-CKHYEDRIADVICAGMP-------  213 (286)
Q Consensus       152 picL~~~~~------~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~--~~~~~--~-c~~~~~~~~~~~C~~~~-------  213 (286)
                      |+-......      ....+....=+|=|................  -....  . -.........++-....       
T Consensus       127 P~~~t~~~~~~~~y~d~~rY~~f~R~GsG~Q~i~~~~g~~~~~~~~ay~yltgGt~~~~~~~~n~~~~~~~~~~~~~~~~  206 (769)
T PF02395_consen  127 PAEMTTAGSDSNTYNDKERYPAFVRVGSGTQYIKDRNGNGTTILGGAYNYLTGGTVYNLPGYGNGSMILSGDLKKFNSYN  206 (769)
T ss_dssp             ---BBSSTTSTTGGGHTTTC-EEEEEESSSEEEEECCEEEEEEEEETTSCEEEEEESSEEEEECTCEEEEESTTTCCCCC
T ss_pred             ccccccccccccccccchhchheeecCCceEEEEcCCCCeeEEEEeccceecCCccccccccccceEEEecccccccccC
Confidence            666543211      122333333334332211111100000000  00000  0 00000001111111100       


Q ss_pred             -CCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCC
Q psy10841        214 -QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCA  252 (286)
Q Consensus       214 -~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~  252 (286)
                       .-....-.||||+||+..+. ...+|+|+|+++.+....
T Consensus       207 ~pL~n~~~~GDSGSPlF~YD~-~~kKWvl~Gv~~~~~~~~  245 (769)
T PF02395_consen  207 GPLPNYGSPGDSGSPLFAYDK-EKKKWVLVGVLSGGNGYN  245 (769)
T ss_dssp             SSSBEB--TT-TT-EEEEEET-TTTEEEEEEEEEEECCCC
T ss_pred             CccccccccCcCCCceEEEEc-cCCeEEEEEEEccccccC
Confidence             01123468999999998774 578999999999877543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S6 (clan PA(S)). The type sample being the IgA1-specific serine endopeptidase from Neisseria gonorrhoeae []. These cleave prolyl bonds in the hinge regions of immunoglobulin A heavy chains. Similar specificity is shown by the unrelated family of M26 metalloendopeptidases.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SZE_A 3H09_B 3SYJ_A 1WXR_A 3AK5_B.

>PF00863 Peptidase_C4: Peptidase family C4 This family belongs to family C4 of the peptidase classification

Probab=95.91  E-value=0.16  Score=42.27  Aligned_cols=151  Identities=14%  Similarity=0.156  Sum_probs=67.0

Q ss_pred             eEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeee---EEEECCCCCCCCCCCceEEEEecCccccC
Q psy10841         71 CGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVS---RIVMHSMFKRAEMTNDLALLQLAAPLRYN  147 (286)
Q Consensus        71 C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~---~~~~hp~y~~~~~~~DiAllkL~~~i~~~  147 (286)
                      ..=.|.--.||||-+|-+.... +.+.+..-          ...+.+.   .+-+||-     ...||.||||.+.++  
T Consensus        33 ~l~gigyG~~iItn~HLf~~nn-g~L~i~s~----------hG~f~v~nt~~lkv~~i-----~~~DiviirmPkDfp--   94 (235)
T PF00863_consen   33 SLYGIGYGSYIITNAHLFKRNN-GELTIKSQ----------HGEFTVPNTTQLKVHPI-----EGRDIVIIRMPKDFP--   94 (235)
T ss_dssp             EEEEEEETTEEEEEGGGGSSTT-CEEEEEET----------TEEEEECEGGGSEEEE------TCSSEEEEE--TTS---
T ss_pred             EEEEEeECCEEEEChhhhccCC-CeEEEEeC----------ceEEEcCCccccceEEe-----CCccEEEEeCCcccC--
Confidence            3334567899999999986544 33343321          1111121   1222221     257999999998774  


Q ss_pred             CceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccccCCCCEEEEeeCCCCCCCCCCCCCCe
Q psy10841        148 RYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGP  227 (286)
Q Consensus       148 ~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~C~~~~~~~~~~c~gdsGgP  227 (286)
                      ..-+-+++    ..+..++.+.++|...+  .........+...... .      ......--     .-.+=.|+-|.|
T Consensus        95 Pf~~kl~F----R~P~~~e~v~mVg~~fq--~k~~~s~vSesS~i~p-~------~~~~fWkH-----wIsTk~G~CG~P  156 (235)
T PF00863_consen   95 PFPQKLKF----RAPKEGERVCMVGSNFQ--EKSISSTVSESSWIYP-E------ENSHFWKH-----WISTKDGDCGLP  156 (235)
T ss_dssp             ---S---B--------TT-EEEEEEEECS--SCCCEEEEEEEEEEEE-E------TTTTEEEE------C---TT-TT-E
T ss_pred             Ccchhhhc----cCCCCCCEEEEEEEEEE--cCCeeEEECCceEEee-c------CCCCeeEE-----EecCCCCccCCc
Confidence            11122233    34566678888876544  2222222222211110 0      11111111     112346788999


Q ss_pred             eeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCC
Q psy10841        228 LLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQ  265 (286)
Q Consensus       228 L~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~  265 (286)
                      |+...   ++  .+|||.|.+..-.   .-..|+.+..
T Consensus       157 lVs~~---Dg--~IVGiHsl~~~~~---~~N~F~~f~~  186 (235)
T PF00863_consen  157 LVSTK---DG--KIVGIHSLTSNTS---SRNYFTPFPD  186 (235)
T ss_dssp             EEETT---T----EEEEEEEEETTT---SSEEEEE--T
T ss_pred             EEEcC---CC--cEEEEEcCccCCC---CeEEEEcCCH
Confidence            99755   23  3999999876432   2467888754

; InterPro: IPR001730 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. Nuclear inclusion A (NIA) proteases from potyviruses are cysteine peptidases belong to the MEROPS peptidase family C4 (NIa protease family, clan PA(C)) [, ]. Potyviruses include plant viruses in which the single-stranded RNA encodes a polyprotein with NIA protease activity, where proteolytic cleavage is specific for Gln+Gly sites. The NIA protease acts on the polyprotein, releasing itself by Gln+Gly cleavage at both the N- and C-termini. It further processes the polyprotein by cleavage at five similar sites in the C-terminal half of the sequence. In addition to its C-terminal protease activity, the NIA protease contains an N-terminal domain that has been implicated in the transcription process []. This peptidase is present in the nuclear inclusion protein of potyviruses.; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MMG_B 1Q31_B 1LVB_A 1LVM_A.

>PF00548 Peptidase_C3: 3C cysteine protease (picornain 3C); InterPro: IPR000199 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.40  E-value=0.49  Score=37.66  Aligned_cols=72  Identities=15%  Similarity=0.233  Sum_probs=39.9

Q ss_pred             CCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccc
Q psy10841         66 DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLR  145 (286)
Q Consensus        66 ~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~  145 (286)
                      .+.+.|.+..|..+|.|-..|.-   ...  .+.+.          ...+++...+..  .+......|+++++|++.-.
T Consensus        22 ~g~~t~l~~gi~~~~~lvp~H~~---~~~--~i~i~----------g~~~~~~d~~~l--v~~~~~~~Dl~~v~l~~~~k   84 (172)
T PF00548_consen   22 KGEFTMLALGIYDRYFLVPTHEE---PED--TIYID----------GVEYKVDDSVVL--VDRDGVDTDLTLVKLPRNPK   84 (172)
T ss_dssp             TEEEEEEEEEEEBTEEEEEGGGG---GCS--EEEET----------TEEEEEEEEEEE--EETTSSEEEEEEEEEESSS-
T ss_pred             CceEEEecceEeeeEEEEECcCC---CcE--EEEEC----------CEEEEeeeeEEE--ecCCCcceeEEEEEccCCcc
Confidence            34677889999999999999931   112  23332          222333322211  11222346999999988777


Q ss_pred             cCCceeeee
Q psy10841        146 YNRYVRPIC  154 (286)
Q Consensus       146 ~~~~v~pic  154 (286)
                      |.+-.+-++
T Consensus        85 frDIrk~~~   93 (172)
T PF00548_consen   85 FRDIRKFFP   93 (172)
T ss_dssp             B--GGGGSB
T ss_pred             cCchhhhhc
Confidence            765444333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This signature defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies C3A and C3B. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral C3 cysteine protease. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SJO_E 2H6M_A 1QA7_C 1HAV_B 2HAL_A 2H9H_A 3QZQ_B 3QZR_A 3R0F_B 3SJ9_A ....

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=91.36  E-value=6  Score=35.20  Aligned_cols=141  Identities=20%  Similarity=0.209  Sum_probs=73.1

Q ss_pred             EEeEEEEee-CCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccccC
Q psy10841         69 FHCGGVVLD-ESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYN  147 (286)
Q Consensus        69 ~~C~GtLIs-~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~  147 (286)
                      ..++|.+++ .-+|||-.|-+..  ...+.+.+.         .......+.+-.       ....|+|++|.+..-.  
T Consensus        72 ~~gSg~i~~~~g~ivTn~hVi~~--a~~i~v~l~---------dg~~~~a~~vg~-------d~~~dlavlki~~~~~--  131 (347)
T COG0265          72 GLGSGFIISSDGYIVTNNHVIAG--AEEITVTLA---------DGREVPAKLVGK-------DPISDLAVLKIDGAGG--  131 (347)
T ss_pred             ccccEEEEcCCeEEEecceecCC--cceEEEEeC---------CCCEEEEEEEec-------CCccCEEEEEeccCCC--
Confidence            678899998 7799999999866  334444441         223333333322       2347999999986432  


Q ss_pred             CceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccc-ccc---CCCCEEEEeeCCCCCCCCCCC
Q psy10841        148 RYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKH-YED---RIADVICAGMPQGGRDTCQGD  223 (286)
Q Consensus       148 ~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~-~~~---~~~~~~C~~~~~~~~~~c~gd  223 (286)
                        +..+.+.... ....++.....|-.....        +.....+++.-.. ...   .....+     ..+...+.|.
T Consensus       132 --~~~~~~~~s~-~l~vg~~v~aiGnp~g~~--------~tvt~Givs~~~r~~v~~~~~~~~~I-----qtdAain~gn  195 (347)
T COG0265         132 --LPVIALGDSD-KLRVGDVVVAIGNPFGLG--------QTVTSGIVSALGRTGVGSAGGYVNFI-----QTDAAINPGN  195 (347)
T ss_pred             --CceeeccCCC-CcccCCEEEEecCCCCcc--------cceeccEEeccccccccCcccccchh-----hcccccCCCC
Confidence              2223343322 233455555555422100        1111112221000 000   011111     2235678999


Q ss_pred             CCCeeeeecCCCCCcEEEEEEEEecCCC
Q psy10841        224 SGGPLLCPVPGSQGRWYVAGVVSHGEGC  251 (286)
Q Consensus       224 sGgPL~~~~~~~~~~~~lvGI~s~~~~c  251 (286)
                      ||||++-      ..-.++||.+.....
T Consensus       196 sGgpl~n------~~g~~iGint~~~~~  217 (347)
T COG0265         196 SGGPLVN------IDGEVVGINTAIIAP  217 (347)
T ss_pred             CCCceEc------CCCcEEEEEEEEecC
Confidence            9999993      223499998876643

>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.51  E-value=0.64  Score=34.60  Aligned_cols=37  Identities=27%  Similarity=0.522  Sum_probs=27.7

Q ss_pred             CCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcH
Q psy10841        219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFV  267 (286)
Q Consensus       219 ~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~  267 (286)
                      .-+||-||+|.|...       ++||++.|-.     .-.-|++|+.+.
T Consensus        87 ~~PGdCGg~L~C~HG-------ViGi~Tagg~-----g~VaF~dir~~~  123 (127)
T PF00947_consen   87 AEPGDCGGILRCKHG-------VIGIVTAGGE-----GHVAFADIRDLL  123 (127)
T ss_dssp             SSTT-TCSEEEETTC-------EEEEEEEEET-----TEEEEEECCCGS
T ss_pred             CCCCCCCceeEeCCC-------eEEEEEeCCC-----ceEEEEechhhh
Confidence            347899999999773       9999987742     246799999853

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.

>KOG1421|consensus

Probab=84.87  E-value=10  Score=36.49  Aligned_cols=83  Identities=20%  Similarity=0.331  Sum_probs=44.8

Q ss_pred             eEEEEeeCC--EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCc-cccC
Q psy10841         71 CGGVVLDES--WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAP-LRYN  147 (286)
Q Consensus        71 C~GtLIs~~--~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~-i~~~  147 (286)
                      -+|.+++++  ++||+.|-+...+.....++.          ......+.-++-.|       -||+.++|.+.. +.|.
T Consensus        86 atgfvvd~~~gyiLtnrhvv~pgP~va~avf~----------n~ee~ei~pvyrDp-------VhdfGf~r~dps~ir~s  148 (955)
T KOG1421|consen   86 ATGFVVDKKLGYILTNRHVVAPGPFVASAVFD----------NHEEIEIYPVYRDP-------VHDFGFFRYDPSTIRFS  148 (955)
T ss_pred             eeEEEEecccceEEEeccccCCCCceeEEEec----------ccccCCcccccCCc-------hhhcceeecChhhccee
Confidence            457778765  899999998654422222221          12222232222222       368888887543 3443


Q ss_pred             CceeeeecCCCCCCCCCCCceEEEEe
Q psy10841        148 RYVRPICLPDVTETPEPYSTCTAVGW  173 (286)
Q Consensus       148 ~~v~picL~~~~~~~~~~~~~~~~Gw  173 (286)
                       .++.+||..  +....+....++|-
T Consensus       149 -~vt~i~lap--~~akvgseirvvgN  171 (955)
T KOG1421|consen  149 -IVTEICLAP--ELAKVGSEIRVVGN  171 (955)
T ss_pred             -eeeccccCc--cccccCCceEEecC
Confidence             467888855  33344555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	286
2any_A	241	Expression, Crystallization And The Three-Dimension		4e-45
2anw_A	241	Expression, Crystallization And Three-Dimensional S		5e-45
4dgj_A	235	Structure Of A Human Enteropeptidase Light Chain Va		6e-44
1ekb_B	235	The Serine Protease Domain Of Enteropeptidase Bound		2e-43
2f91_A	237	1.2a Resolution Structure Of A Crayfish Trypsin Com		2e-41
3dfj_A	263	Crystal Structure Of Human Prostasin Length = 263		6e-41
3gyl_B	261	Structure Of Prostasin At 1.3 Angstroms Resolution		1e-40
3e0p_B	271	The X-Ray Structure Of Human Prostasin In Complex W		1e-40
2oq5_A	232	Crystal Structure Of Desc1, A New Member Of The Typ		1e-39
3t2n_A	372	Human Hepsin Protease In Complex With The Fab Fragm		2e-39
1z8g_A	372	Crystal Structure Of The Extracellular Region Of Th		2e-39
2bm2_A	245	Human Beta-Ii Tryptase In Complex With 4-(3-Aminome		2e-39
2zeb_A	243	Potent, Nonpeptide Inhibitors Of Human Mast Cell Tr		2e-39
1a0l_A	244	Human Beta-Tryptase: A Ring-Like Tetramer With Acti		2e-39
1o5e_H	255	Dissecting And Designing Inhibitor Selectivity Dete		7e-39
2f9n_A	245	Crystal Structure Of The Recombinant Human Alpha I		3e-38
2f83_A	625	Crystal Structure At 2.9 Angstroms Resolution Of Hu		5e-38
1xx9_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		6e-38
1zhm_A	238	Crystal Structure Of The Catalytic Domain Of The Co		8e-38
2f9o_A	245	Crystal Structure Of The Recombinant Human Alpha I		8e-38
1zhp_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		9e-38
1xxd_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		1e-37
3bg8_A	238	Crystal Structure Of Factor Xia In Complex With Cla		2e-37
1zpz_A	238	Factor Xi Catalytic Domain Complexed With N-((R)-1-		4e-37
3sor_A	238	Factor Xia In Complex With A Clorophenyl-tetrazole		5e-37
1zlr_A	237	Factor Xi Catalytic Domain Complexed With 2-Guanidi		8e-37
1zhr_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		8e-37
2cga_A	245	Bovine Chymotrypsinogen A. X-Ray Crystal Structure		9e-37
1lto_A	245	Human Alpha1-Tryptase Length = 245		9e-37
1zjd_A	237	Crystal Structure Of The Catalytic Domain Of Coagul		1e-36
2wph_S	235	Factor Ixa Superactive Triple Mutant Length = 235		3e-36
1sgf_G	237	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		3e-36
1pfx_C	235	Porcine Factor Ixa Length = 235		4e-36
2wpm_S	235	Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Le		5e-36
2wpi_S	235	Factor Ixa Superactive Double Mutant Length = 235		6e-36
1rfn_A	235	Human Coagulation Factor Ixa In Complex With P-Amin		9e-36
1dlk_B	230	Crystal Structure Analysis Of Delta-Chymotrypsin Bo		1e-35
3kcg_H	235	Crystal Structure Of The Antithrombin-Factor Ixa- P		2e-35
1bui_B	250	Structure Of The Ternary Microplasmin-Staphylokinas		6e-35
3uir_A	247	Crystal Structure Of The Plasmin-Textilinin-1 Compl		6e-35
4dur_A	791	The X-Ray Crystal Structure Of Full-Length Type Ii		1e-34
1bml_A	250	Complex Of The Catalytic Domain Of Human Plasmin An		1e-34
1co7_E	245	R117h Mutant Rat Anionic Trypsin Complexed With Bov		1e-34
1l4d_A	249	Crystal Structure Of Microplasminogen-streptokinase		1e-34
1ddj_A	247	Crystal Structure Of Human Plasminogen Catalytic Do		1e-34
1l4z_A	248	X-Ray Crystal Structure Of The Complex Of Microplas		1e-34
1qrz_A	246	Catalytic Domain Of Plasminogen Length = 246		2e-34
3tgj_E	233	S195a Trypsinogen Complexed With Bovine Pancreatic		6e-34
1f7z_A	233	Rat Trypsinogen K15a Complexed With Bovine Pancreat		8e-34
1fxy_A	228	Coagulation Factor Xa-Trypsin Chimera Inhibited Wit		1e-33
2ra3_A	224	Human Cationic Trypsin Complexed With Bovine Pancre		1e-33
1trn_A	224	Crystal Structure Of Human Trypsin 1: Unexpected Ph		1e-33
1rjx_B	247	Human Plasminogen Catalytic Domain, K698m Mutant Le		2e-33
3tgi_E	223	Wild-Type Rat Anionic Trypsin Complexed With Bovine		2e-33
1slw_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		2e-33
1fiz_A	263	Three Dimensional Structure Of Beta-Acrosin From Bo		3e-33
1hj8_A	222	1.00 Aa Trypsin From Atlantic Salmon Length = 222		3e-33
1utj_A	242	Trypsin Specificity As Elucidated By Lie Calculatio		3e-33
1slx_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		4e-33
1ao5_A	237	Mouse Glandular Kallikrein-13 (Prorenin Converting		5e-33
1k9o_E	223	Crystal Structure Of Michaelis Serpin-Trypsin Compl		5e-33
1anc_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Lys		6e-33
3p8g_A	241	Crystal Structure Of Mt-Sp1 In Complex With Benzami		6e-33
1ql9_A	223	Factor Xa Specific Inhibitor In Complex With Rat Tr		7e-33
1trm_A	223	The Three-Dimensional Structure Of Asn102 Mutant Of		7e-33
1anb_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Glu		7e-33
1eaw_A	241	Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (A		7e-33
1bzx_E	222	The Crystal Structure Of Anionic Salmon Trypsin In		7e-33
1dpo_A	223	Structure Of Rat Trypsin Length = 223		8e-33
2zpq_A	222	Crystal Structure Of Anionic Trypsin Isoform 1 From		9e-33
2tbs_A	222	Cold-Adaption Of Enzymes: Structural Comparison Bet		1e-32
1ezs_C	223	Crystal Structure Of Ecotin Mutant M84r, W67a, G68a		1e-32
1and_A	223	Anionic Trypsin Mutant With Arg 96 Replaced By His		1e-32
1f5r_A	231	Rat Trypsinogen Mutant Complexed With Bovine Pancre		1e-32
1bit_A	237	The Crystal Structure Of Anionic Salmon Trypsin In		1e-32
2vnt_A	276	Urokinase-Type Plasminogen Activator Inhibitor Comp		1e-32
2zps_A	222	Crystal Structure Of Anionic Trypsin Isoform 3 From		1e-32
1amh_A	223	Uncomplexed Rat Trypsin Mutant With Asp 189 Replace		1e-32
1fy8_E	231	Crystal Structure Of The Deltaile16val17 Rat Anioni		1e-32
1fiw_A	290	Three-Dimensional Structure Of Beta-Acrosin From Ra		2e-32
3ig6_B	253	Low Molecular Weigth Human Urokinase Type Plasminog		2e-32
2zpr_A	222	Crystal Structure Of Anionic Trypsin Isoform 2 From		2e-32
1lmw_B	253	Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-A		2e-32
1owd_A	245	Substituted 2-naphthamidine Inhibitors Of Urokinase		3e-32
1sgf_A	240	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		3e-32
1owe_A	245	Substituted 2-Naphthamidine Inhibitors Of Urokinase		3e-32
1gj7_B	253	Engineering Inhibitors Highly Selective For The S1		4e-32
1j15_A	223	Benzamidine In Complex With Rat Trypsin Mutant X991		4e-32
3tgk_E	231	Trypsinogen Mutant D194n And Deletion Of Ile 16-Val		4e-32
1mbq_A	220	Anionic Trypsin From Pacific Chum Salmon Length = 2		5e-32
4dg4_A	224	Human Mesotrypsin-S39y Complexed With Bovine Pancre		5e-32
1gi8_B	245	A Novel Serine Protease Inhibition Motif Involving		6e-32
1zzz_A	237	Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes		6e-32
1o5a_B	253	Dissecting And Designing Inhibitor Selectivity Dete		6e-32
1f0t_A	243	Bovine Trypsin Complexed With Rpr131247 Length = 24		7e-32
1eq9_A	222	Crystal Structure Of Fire Ant Chymotrypsin Complexe		7e-32
3bn9_B	241	Crystal Structure Of Mt-Sp1 In Complex With Fab Inh		8e-32
1tgs_Z	229	Three-Dimensional Structure Of The Complex Between		9e-32
1bru_P	241	Structure Of Porcine Pancreatic Elastase Complexed		9e-32
1brb_E	223	Crystal Structures Of Rat Anionic Trypsin Complexed		1e-31
1g3b_A	228	Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Ba		1e-31
1sc8_U	262	Urokinase Plasminogen Activator B-Chain-J435 Comple		1e-31
2d8w_A	223	Structure Of Hyper-Vil-Trypsin Length = 223		1e-31
1oph_B	243	Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh		2e-31
2nwn_A	253	New Pharmacophore For Serine Protease Inhibition Re		2e-31
1taw_A	223	Bovine Trypsin Complexed To Appi Length = 223		2e-31
1ejn_A	253	Urokinase Plasminogen Activator B-Chain Inhibitor C		2e-31
1tab_E	223	Structure Of The Trypsin-Binding Domain Of Bowman-B		2e-31
1h4w_A	224	Structure Of Human Trypsin Iv (Brain Trypsin) Lengt		2e-31
3mwi_U	246	The Complex Crystal Structure Of Urokianse And 5-Ni		2e-31
2r9p_A	224	Human Mesotrypsin Complexed With Bovine Pancreatic		2e-31
4fu7_A	246	Crystal Structure Of The Urokinase Length = 246		2e-31
1w0z_U	247	Urokinase Type Plasminogen Activator Length = 247		2e-31
1fv9_A	245	Crystal Structure Of Human Microurokinase In Comple		3e-31
3qk1_A	229	Crystal Structure Of Enterokinase-Like Trypsin Vari		4e-31
3ela_H	254	Crystal Structure Of Active Site Inhibited Coagulat		4e-31
2o8u_A	253	Crystal Structure And Binding Epitopes Of Urokinase		4e-31
3veq_B	223	A Binary Complex Betwwen Bovine Pancreatic Trypsin		4e-31
3otj_E	223	A Crystal Structure Of Trypsin Complexed With Bpti		5e-31
1dan_H	254	Complex Of Active Site Inhibited Human Blood Coagul		5e-31
1y59_T	223	Dianhydrosugar-Based Benzamidine, Factor Xa Specifi		5e-31
1a0j_A	223	Crystal Structure Of A Non-Psychrophilic Trypsin Fr		6e-31
1gdu_A	224	Fusarium Oxysporum Trypsin At Atomic Resolution Len		7e-31
2bq6_B	249	Crystal Structure Of Factor Xa In Complex With 21 L		7e-31
5ptp_A	223	Structure Of Hydrolase (Serine Proteinase) Length =		9e-31
1ntp_A	223	Use Of The Neutron Diffraction HD EXCHANGE TECHNIQU		9e-31
1xvm_A	224	Trypsin From Fusarium Oxysporum- Room Temperature T		2e-30
1v2s_T	223	Benzamidine In Complex With Bovine Trypsin Variant		2e-30
2fi4_E	223	Crystal Structure Of A Bpti Variant (Cys14->ser) In		2e-30
1ppz_A	224	Trypsin Complexes At Atomic And Ultra-High Resoluti		3e-30
1mct_A	223	The Refined 1.6 Angstroms Resolution Crystal Struct		3e-30
2bok_A	241	Factor Xa- Cation Length = 241		3e-30
1fax_A	254	Coagulation Factor Xa Inhibitor Complex Length = 25		3e-30
2y5f_A	234	Factor Xa - Cation Inhibitor Complex Length = 234		3e-30
1v2u_T	223	Benzamidine In Complex With Bovine Trypsin Varinat		3e-30
1hcg_A	241	Structure Of Human Des(1-45) Factor Xa At 2.2 Angst		4e-30
1v2j_T	223	Benzamidine In Complex With Bovine Trypsin Variant		4e-30
1fjs_A	234	Crystal Structure Of The Inhibitor Zk-807834 (Ci-10		4e-30
1xka_C	235	Factor Xa Complexed With A Synthetic Inhibitor Fx-2		4e-30
1mq5_A	233	Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-ch		5e-30
1ezq_A	254	Crystal Structure Of Human Coagulation Factor Xa Co		5e-30
3ens_B	238	Crystal Structure Of Human Fxa In Complex With Meth		5e-30
1v2o_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		6e-30
1c5m_D	255	Structural Basis For Selectivity Of A Small Molecul		6e-30
4an7_A	231	Kunitz Type Trypsin Inhibitor Complex With Porcine		6e-30
2ftm_A	224	Crystal Structure Of A Bpti Variant (Cys38->ser) In		6e-30
2xrc_A	565	Human Complement Factor I Length = 565		7e-30
1v2k_T	223	Factor Xa Specific Inhibitor In Complex With Bovine		8e-30
1v2q_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		9e-30
2gd4_H	241	Crystal Structure Of The Antithrombin-S195a Factor		1e-29
1tfx_A	223	Complex Of The Second Kunitz Domain Of Tissue Facto		1e-29
1mh0_A	287	Crystal Structure Of The Anticoagulant Slow Form Of		1e-29
3pwb_A	223	Bovine Trypsin Variant X(Tripleglu217ile227) In Com		1e-29
3myw_A	223	The Bowman-Birk Type Inhibitor From Mung Bean In Te		1e-29
1hag_E	295	The Isomorphous Structures Of Prethrombin2, Hirugen		1e-29
1kig_H	241	Bovine Factor Xa Length = 241		1e-29
1nu9_A	291	Staphylocoagulase-prethrombin-2 Complex Length = 29		1e-29
2bdy_A	289	Thrombin In Complex With Inhibitor Length = 289		1e-29
1d9i_A	288	Structure Of Thrombin Complexed With Selective Non-		1e-29
1d6w_A	287	Structure Of Thrombin Complexed With Selective Non-		2e-29
1nm6_A	287	Thrombin In Complex With Selective Macrocyclic Inhi		2e-29
1eoj_A	289	Design Of P1' And P3' Residues Of Trivalent Thrombi		2e-29
1jwt_A	305	Crystal Structure Of Thrombin In Complex With A Nov		2e-29
3nxp_A	424	Crystal Structure Of Human Prethrombin-1 Length = 4		2e-29
3plk_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		2e-29
2a31_A	223	Trypsin In Complex With Borate Length = 223		2e-29
4b2a_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		2e-29
3sqe_E	290	Crystal Structure Of Prethrombin-2 Mutant S195a In		3e-29
3k65_B	308	Crystal Structure Of Prethombin-2FRAGMENT-2 Complex		3e-29
1h8i_H	253	X-Ray Crystal Structure Of Human Alpha-Thrombin Wit		3e-29
1v2n_T	223	Potent Factor Xa Inhibitor In Complex With Bovine T		3e-29
2bvr_H	252	Human Thrombin Complexed With Fragment-based Small		3e-29
1vzq_H	250	Complex Of Thrombin With Designed Inhibitor 7165 Le		3e-29
3pmj_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		4e-29
1h8d_H	260	X-Ray Structure Of The Human Alpha-Thrombin Complex		6e-29
4b1t_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		7e-29
1an1_E	223	Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Len		7e-29
3uqv_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		8e-29
1fdp_A	235	Proenzyme Of Human Complement Factor D, Recombinant		8e-29
4b2b_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		8e-29
3uwi_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		9e-29
1thp_B	259	Structure Of Human Alpha-Thrombin Y225p Mutant Boun		1e-28
3uns_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		1e-28
1spj_A	238	Structure Of Mature Human Tissue Kallikrein (Human		2e-28
1mkw_K	308	The Co-Crystal Structure Of Unliganded Bovine Alpha		2e-28
2qxg_A	224	Crystal Structure Of Human Kallikrein 7 In Complex		2e-28
3bsq_A	227	Crystal Structure Of Human Kallikrein 7 Produced As		3e-28
3unq_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		3e-28
1elt_A	236	Structure Of Native Pancreatic Elastase From North		3e-28
4b2c_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		3e-28
1twx_B	259	Crystal Structure Of The Thrombin Mutant D221aD222K		3e-28
3f6u_H	240	Crystal Structure Of Human Activated Protein C (Apc		3e-28
1aut_C	250	Human Activated Protein C Length = 250		4e-28
2eek_A	220	Crystal Structure Of Atlantic Cod Trypsin Complexed		4e-28
1bda_A	265	Catalytic Domain Of Human Single Chain Tissue Plasm		4e-28
4d9q_A	228	Inhibiting Alternative Pathway Complement Activatio		4e-28
3i77_A	230	3599170-Loops Of Fxa In Sgt Length = 230		4e-28
1dst_A	228	Mutant Of Factor D With Enhanced Catalytic Activity		5e-28
1bth_H	259	Structure Of Thrombin Complexed With Bovine Pancrea		6e-28
1ton_A	235	Rat Submaxillary Gland Serine Protease, Tonin. Stru		6e-28
2xwa_A	228	Crystal Structure Of Complement Factor D Mutant R20		6e-28
1hj9_A	223	Atomic Resolution Structures Of Trypsin Provide Ins		7e-28
2tld_E	220	Crystal Structure Of An Engineered Subtilisin Inhib		7e-28
1dm4_B	260	Ser195ala Mutant Of Human Thrombin Complexed With F		8e-28
1hax_B	240	Snapshots Of Serine Protease Catalysis: (A) Acyl-En		8e-28
3v0x_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		8e-28
2est_E	240	Crystallographic Study Of The Binding Of A Trifluor		8e-28
3r3g_B	259	Structure Of Human Thrombin With Residues 145-150 O		1e-27
1sfq_B	259	Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack		1e-27
2a0q_B	257	Structure Of Thrombin In 400 Mm Potassium Chloride		1e-27
1b7x_B	259	Structure Of Human Alpha-Thrombin Y225i Mutant Boun		1e-27
4igd_A	406	Crystal Structure Of The Zymogen Catalytic Region O		1e-27
1dsu_A	228	Human Factor D, Complement Activating Enzyme Length		1e-27
1abi_H	259	Structure Of The Hirulog 3-Thrombin Complex And Nat		1e-27
3gic_B	250	Structure Of Thrombin Mutant Delta(146-149e) In The		1e-27
1gj5_H	258	Selectivity At S1, H2o Displacement, Upa, Tpa, Ser1		1e-27
1rtf_B	252	Complex Of Benzamidine With The Catalytic Domain Of		1e-27
1eai_A	240	Complex Of Ascaris Chymotrpsin/elastase Inhibitor W		1e-27
1qur_H	257	Human Alpha-Thrombin In Complex With Bivalent, Benz		1e-27
2thf_B	259	Structure Of Human Alpha-thrombin Y225f Mutant Boun		2e-27
3gov_B	251	Crystal Structure Of The Catalytic Region Of Human		2e-27
3jz1_B	259	Crystal Structure Of Human Thrombin Mutant N143p In		2e-27
2ocv_B	259	Structural Basis Of Na+ Activation Mimicry In Murin		2e-27
1dx5_M	259	Crystal Structure Of The Thrombin-Thrombomodulin Co		2e-27
2xw9_A	228	Crystal Structure Of Complement Factor D Mutant S18		3e-27
1jou_B	259	Crystal Structure Of Native S195a Thrombin With An		3e-27
2od3_B	259	Human Thrombin Chimera With Human Residues 184a, 18		3e-27
1rd3_B	259	2.5a Structure Of Anticoagulant Thrombin Variant E2		4e-27
2gp9_B	259	Crystal Structure Of The Slow Form Of Thrombin In A		4e-27
1z8i_B	259	Crystal Structure Of The Thrombin Mutant G193a Boun		5e-27
4gso_A	232	Structure Of Jararacussin-I Length = 232		5e-27
3ee0_B	259	Crystal Structure Of The W215aE217A MUTANT OF HUMAN		6e-27
1tq0_B	257	Crystal Structure Of The Potent Anticoagulant Throm		6e-27
1pyt_C	253	Ternary Complex Of Procarboxypeptidase A, Proprotei		6e-27
2xxl_A	408	Crystal Structure Of Drosophila Grass Clip Serine P		6e-27
2pux_B	258	Crystal Structure Of Murine Thrombin In Complex Wit		7e-27
1wbg_B	259	Active Site Thrombin Inhibitors Length = 259		8e-27
3i78_A	229	3599170186220-Loops Of Fxa In Sgt Length = 229		1e-26
1z8j_B	259	Crystal Structure Of The Thrombin Mutant G193p Boun		1e-26
3edx_B	258	Crystal Structure Of The W215aE217A MUTANT OF MURIN		1e-26
1bbr_K	259	The Structure Of Residues 7-16 Of The A Alpha Chain		2e-26
1id5_H	256	Crystal Structure Of Bovine Thrombin Complex With P		3e-26
2b9l_A	394	Crystal Structure Of Prophenoloxidase Activating Fa		3e-26
3beu_A	224	Na+-Dependent Allostery Mediates Coagulation Factor		4e-26
1ybw_A	283	Protease Domain Of Hgfa With No Inhibitor Length =		4e-26
2aip_A	231	Crystal Structure Of Native Protein C Activator Fro		5e-26
1q3x_A	328	Crystal Structure Of The Catalytic Region Of Human		7e-26
1vr1_H	261	Specifity For Plasminogen Activator Inhibitor-1 Len		9e-26
2pgb_B	259	Inhibitor-Free Human Thrombin Mutant C191a-C220a Le		1e-25
2wub_A	257	Crystal Structure Of Hgfa In Complex With The Allos		1e-25
2r0l_A	248	Short Form Hgfa With Inhibitory Fab75 Length = 248		1e-25
1a5i_A	265	Catalytic Domain Of Vampire Bat (Desmodus Rotundus)		2e-25
1l2e_A	223	Human Kallikrein 6 (Hk6) Active Form With Benzamidi		4e-25
2fmj_A	222	220-Loop Mutant Of Streptomyces Griseus Trypsin Len		4e-25
1fi8_A	228	Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Ie		5e-25
1os8_A	223	Recombinant Streptomyces Griseus Trypsin Length = 2		6e-25
1zjk_A	403	Crystal Structure Of The Zymogen Catalytic Region O		6e-25
3tvj_B	242	Catalytic Fragment Of Masp-2 In Complex With Its Sp		7e-25
1h9h_E	231	Complex Of Eeti-Ii With Porcine Trypsin Length = 23		1e-24
1m9u_A	241	Crystal Structure Of Earthworm Fibrinolytic Enzyme		1e-24
4fxg_H	242	Complement C4 In Complex With Masp-2 Length = 242		2e-24
1sgt_A	223	Refined Crystal Structure Of Streptomyces Griseus T		2e-24
1gvl_A	223	Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M P		2e-24
1orf_A	234	The Oligomeric Structure Of Human Granzyme A Reveal		2e-24
1op8_A	234	Crystal Structure Of Human Granzyme A Length = 234		3e-24
4h4f_A	249	Crystal Structure Of Human Chymotrypsin C (ctrc) Bo		3e-24
4d8n_A	223	Human Kallikrein 6 Inhibitors With A Para-Amidobenz		4e-24
1oss_A	223	T190p Streptomyces Griseus Trypsin In Complex With		5e-24
1mza_A	240	Crystal Structure Of Human Pro-Granzyme K Length =		5e-24
1bqy_A	234	Plasminogen Activator (tsv-pa) From Snake Venom Len		7e-24
1fon_A	240	Crystal Structure Of Bovine Procarboxypeptidase A-S		7e-24
1op2_A	234	Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snak		8e-24
2psx_A	227	Crystal Structure Of Human Kallikrein 5 In Complex		1e-23
1op0_A	234	Crystal Structure Of Aav-sp-i, A Glycosylated Snake		1e-23
3s9a_A	234	Russell's Viper Venom Serine Proteinase, Rvv-V (Clo		1e-23
1euf_A	227	Bovine Duodenase(New Serine Protease), Crystal Stru		1e-23
1fq3_A	227	Crystal Structure Of Human Granzyme B Length = 227		1e-23
1iau_A	227	Human Granzyme B In Complex With Ac-Iepd-Cho Length		2e-23
1pyt_D	251	Ternary Complex Of Procarboxypeptidase A, Proprotei		4e-23
1ym0_A	238	Crystal Structure Of Earthworm Fibrinolytic Enzyme		4e-23
1npm_A	225	Neuropsin, A Serine Protease Expressed In The Limbi		5e-23
1md8_A	329	Monomeric Structure Of The Active Catalytic Domain		7e-23
2zch_P	237	Crystal Structure Of Human Prostate Specific Antige		9e-23
1md7_A	328	Monomeric Structure Of The Zymogen Of Complement Pr		1e-22
4gaw_A	226	Crystal Structure Of Active Human Granzyme H Length		2e-22
1elv_A	333	Crystal Structure Of The Catalytic Domain Of Human		3e-22
1gpz_A	399	The Crystal Structure Of The Zymogen Catalytic Doma		3e-22
3tju_A	226	Crystal Structure Of Human Granzyme H With An Inhib		5e-22
2qy0_B	242	Active Dimeric Structure Of The Catalytic Domain Of		2e-21
4e7n_A	238	Crystal Structure Of Ahv_tl-I, A Glycosylated Snake		2e-21
2zgc_A	240	Crystal Structure Of Active Human Granzyme M Length		3e-21
1fuj_A	221	Pr3 (Myeloblastin) Length = 221		6e-21
2zgj_A	240	Crystal Structure Of D86n-gzmm Complexed With Its O		1e-20
2bdg_A	223	Human Kallikrein 4 Complex With Nickel And P-aminob		2e-20
1gvz_A	237	Prostate Specific Antigen (Psa) From Stallion Semin		3e-20
1azz_A	226	Fiddler Crab Collagenase Complexed To Ecotin Length		3e-20
1si5_H	240	Protease-Like Domain From 2-Chain Hepatocyte Growth		4e-20
1shy_A	234	The Crystal Structure Of Hgf Beta-Chain In Complex		4e-20
2rdl_A	226	Hamster Chymase 2 Length = 226		5e-20
3g01_A	227	Structure Of Grc Mutant E192rE193G Length = 227		6e-20
3s69_A	234	Crystal Structure Of Saxthrombin Length = 234		6e-20
3rp2_A	224	The Structure Of Rat Mast Cell Protease Ii At 1.9-A		1e-19
1kyn_B	235	Cathepsin-G Length = 235		3e-19
3fzz_A	227	Structure Of Grc Length = 227		3e-19
1au8_A	224	Human Cathepsin G Length = 224		3e-19
1nn6_A	228	Human Pro-Chymase Length = 228		1e-18
1pjp_A	226	The 2.2 A Crystal Structure Of Human Chymase In Com		2e-18
1klt_A	226	Crystal Structure Of Pmsf-Treated Human Chymase At		2e-18
2kai_B	152	Refined 2.5 Angstroms X-Ray Crystal Structure Of Th		3e-18
3n7o_A	226	X-Ray Structure Of Human Chymase In Complex With Sm		3e-18
4afq_A	226	Human Chymase - Fynomer Complex Length = 226		4e-18
1mtn_B	131	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		9e-18
2jet_B	128	Crystal Structure Of A Trypsin-Like Mutant (S189d,		2e-17
2olg_A	278	Crystal Structure Of The Serine Protease Domain Of		2e-17
1kdq_A	131	Crystal Structure Analysis Of The Mutant S189d Rat		3e-17
1ppg_E	218	The Refined 2.3 Angstroms Crystal Structure Of Huma		7e-17
1ppf_E	218	X-Ray Crystal Structure Of The Complex Of Human Leu		8e-17
1hne_E	218	Structure Of Human Neutrophil Elastase In Complex W		1e-16
1b0f_A	218	Crystal Structure Of Human Neutrophil Elastase With		1e-16
2asu_B	234	Crystal Structure Of The Beta-Chain Of HgflMSP Leng		2e-16
2rg3_A	218	Covalent Complex Structure Of Elastase Length = 218		3e-16
1hyl_A	230	The 1.8 A Structure Of Collagenase From Hypoderma L		9e-15
1fy1_A	225	[r23s,F25e]hbp, A Mutant Of Human Heparin Binding P		3e-14
4f4o_C	347	Structure Of The Haptoglobin-Haemoglobin Complex Le		3e-14
1ept_C	98	Refined 1.8 Angstroms Resolution Crystal Structure		4e-14
1fy3_A	225	[g175q]hbp, A Mutant Of Human Heparin Binding Prote		4e-14
1a7s_A	225	Atomic Resolution Structure Of Hbp Length = 225		4e-14
1uhb_B	98	Crystal Structure Of Porcine Alpha Trypsin Bound Wi		1e-13
3h7t_A	235	Crystal Structure Of Scabies Mite Inactivated Prote		7e-13
2jet_C	99	Crystal Structure Of A Trypsin-Like Mutant (S189d,		1e-12
1bhx_B	147	X-Ray Structure Of The Complex Of Human Alpha Throm		1e-12
1kdq_B	99	Crystal Structure Analysis Of The Mutant S189d Rat		5e-12
1bbr_H	150	The Structure Of Residues 7-16 Of The A Alpha Chain		6e-12
1mtn_C	97	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		1e-11
1afq_C	96	Crystal Structure Of Bovine Gamma-Chymotrypsin Comp		2e-11
3h7o_A	228	Crystal Structure Of Scabies Mite Inactivated Prote		4e-11
2hnt_F	105	Crystallographic Structure Of Human Gamma-Thrombin		4e-10
2pks_C	102	Thrombin In Complex With Inhibitor Length = 102		4e-10
1bbr_E	109	The Structure Of Residues 7-16 Of The A Alpha Chain		5e-10
1aks_A	125	Crystal Structure Of The First Active Autolysate Fo		9e-10
2win_I	507	C3 Convertase (C3bbb) Stabilized By Scin Length = 5		2e-08
1rrk_A	497	Crystal Structure Analysis Of The Bb Segment Of Fac		3e-08
2ok5_A	752	Human Complement Factor B Length = 752		3e-08
2kai_A	80	Refined 2.5 Angstroms X-Ray Crystal Structure Of Th		4e-08
2xwb_F	732	Crystal Structure Of Complement C3b In Complex With		4e-08
3hrz_D	741	Cobra Venom Factor (Cvf) In Complex With Human Fact		4e-08
1dle_A	298	Factor B Serine Protease Domain Length = 298		6e-08
2i6q_A	517	Complement Component C2a Length = 517		2e-05
2odp_A	509	Complement Component C2a, The Catalytic Fragment Of		3e-05
3h5c_B	317	X-Ray Structure Of Protein Z-Protein Z Inhibitor Co		1e-04
3f1s_B	283	Crystal Structure Of Protein Z Complexed With Prote		2e-04
2hnt_C	70	Crystallographic Structure Of Human Gamma-Thrombin		3e-04
2hnt_E	81	Crystallographic Structure Of Human Gamma-Thrombin		7e-04

>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/241 (35%), Positives = 141/241 (58%), Gaps = 12/241 (4%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFH---CGGVVLDESWVMTAAHCVDGFE-KHYFEVYAG 101
           +VGG ++  G WPW ++L          CGG ++   WV+TAAHC DG   +  + +Y+G
Sbjct: 1   IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
           +L     +       +  I++H  +K +E  +D+AL++L APL Y  + +PI LP   +T
Sbjct: 61  ILELSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDT 120
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYED-RIAD-VICAGMPQGG 216
              Y+ C   GWG   E G   + +++V +P++    C K Y+D +I   ++CAG  +GG
Sbjct: 121 STIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGG 180
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER 276
           +D C+GDSGGPL+C      G W + G+ S GEGCAR  +PGVYT+V++++ W++  ++ 
Sbjct: 181 KDACKGDSGGPLVCK---HNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQS 237
Query: 277 A 277
           +
Sbjct: 238 S 238

>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score =  177 bits (450), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 86/241 (35%), Positives = 140/241 (58%), Gaps = 12/241 (4%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFH---CGGVVLDESWVMTAAHCVDGFE-KHYFEVYAG 101
           +VGG  +  G WPW ++L          CGG ++   WV+TAAHC DG   +  + +Y+G
Sbjct: 1   IVGGTNSSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
           +L     +       +  I++H  +K +E  +D+AL++L APL Y  + +PI LP   +T
Sbjct: 61  ILNLSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLNYTEFQKPISLPSKGDT 120
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYED-RIAD-VICAGMPQGG 216
              Y+ C   GWG   E G   + +++V +P++    C K Y+D +I   ++CAG  +GG
Sbjct: 121 STIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGG 180
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER 276
           +D C+GDSGGPL+C      G W + G+ S GEGCAR  +PGVYT+V++++ W++  ++ 
Sbjct: 181 KDACKGDSGGPLVCK---HNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQS 237
Query: 277 A 277
           +
Sbjct: 238 S 238

>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant Length = 235

Iteration: 1
 Score =  174 bits (440), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 89/235 (37%), Positives = 131/235 (55%), Gaps = 11/235 (4%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDG--FEKHYFEVYAGML 103
           +VGG  A+ GAWPW++ LY D    CG  ++   W+++AAHCV G   E   +    G+ 
Sbjct: 1   IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLH 60
Query: 104 RRFSFSPTEQV-RPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
            + + +  + V R +  IV++  + R    ND+A++ L   + Y  Y++PI LP+  +  
Sbjct: 61  MKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVF 120
Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKHY---EDRIADVICAGMPQGGR 217
            P   C+  GWG V   G   D ++E  VP+L    C+      +   ++ICAG  +GG 
Sbjct: 121 PPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEYNITENMICAGYEEGGI 180
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           D+CQGDSGGPL+C       RW++AGV S G  CA PN PGVY RVS+F  W+ S
Sbjct: 181 DSCQGDSGGPLMCQ---ENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQS 232

>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane Length = 235

Iteration: 1
 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/235 (37%), Positives = 131/235 (55%), Gaps = 11/235 (4%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDG--FEKHYFEVYAGML 103
           +VGG  +  GAWPW++ALY D    CG  ++   W+++AAHCV G   E   ++   G+ 
Sbjct: 1   IVGGSDSREGAWPWVVALYFDDQQVCGASLVSRDWLVSAAHCVYGRNMEPSKWKAVLGLH 60
Query: 104 RRFSF-SPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
              +  SP  + R + +IV++  + +    ND+A++ L   + Y  Y++PICLP+  +  
Sbjct: 61  MASNLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVF 120
Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE-----DRIADVICAGMPQGGR 217
            P   C+  GWGA+   G   D ++E  VP+L   K  +     +   +++CAG   GG 
Sbjct: 121 PPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQMPEYNITENMVCAGYEAGGV 180
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           D+CQGDSGGPL+C       RW +AGV S G  CA PN PGVY RV +F  W+ S
Sbjct: 181 DSCQGDSGGPLMCQ---ENNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQS 232

>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed With A Peptide Inhibitor, Sgti Length = 237

Iteration: 1
 Score =  166 bits (419), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/241 (40%), Positives = 138/241 (57%), Gaps = 17/241 (7%)
Query: 46  VVGGKKAELGAWPWLIALYRD--GF-FH-CGGVVLDESWVMTAAHCV--DGFEK-HYFEV 98
           +VGG  A LG +P+ ++      GF FH CG  + +E++ +TA HCV  D +E     ++
Sbjct: 1   IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQI 60
Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV 158
            AG L       +EQ+  VS+I++H  F    + ND++LL+L+  L +N  V PI LP+ 
Sbjct: 61  VAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQ 120
Query: 159 TETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPA----CKHYEDRIAD-VICAGMP 213
             T          GWG   E G  PD +++V VP++        +  D I D +ICAG+P
Sbjct: 121 GHTAT--GDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAGVP 178
Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           +GG+D+CQGDSGGPL     GS    Y+AG+VS G GCARP  PGVYT VS  V W+ +N
Sbjct: 179 EGGKDSCQGDSGGPLAASDTGST---YLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKAN 235
Query: 274 S 274
           +
Sbjct: 236 A 236

>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin Length = 263

Iteration: 1
 Score =  164 bits (415), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/245 (35%), Positives = 130/245 (53%), Gaps = 22/245 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCV-DGFEKHYFEVYAGMLR 104
           + GG  A  G WPW +++  +G   CGG ++ E WV++AAHC      K  +EV  G  +
Sbjct: 1   ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQ 60
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
             S+S   +V  +  I+ H  + +     D+ALLQL+ P+ ++RY+RPI LP    +   
Sbjct: 61  LDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAANASFPN 120
Query: 165 YSTCTAVGWGAVFEHGP--DPDHMREVQVPIL--------------PACKHYEDRIADVI 208
              CT  GWG V        P  +++++VP++              P   H+     D++
Sbjct: 121 GLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNALYNIDAKPEEPHFVQE--DMV 178
Query: 209 CAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVP 268
           CAG  +GG+D CQGDSGGPL CPV   +G WY+ G+VS G+ C   N PGVYT  S +  
Sbjct: 179 CAGYVEGGKDACQGDSGGPLSCPV---EGLWYLTGIVSWGDACGARNRPGVYTLASSYAS 235
Query: 269 WLMSN 273
           W+ S 
Sbjct: 236 WIQSK 240

>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In Complex With A Calcium Ion. Length = 261

Iteration: 1
 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/245 (35%), Positives = 130/245 (53%), Gaps = 22/245 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCV-DGFEKHYFEVYAGMLR 104
           + GG  A  G WPW +++  +G   CGG ++ E WV++AAHC      K  +EV  G  +
Sbjct: 1   ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQ 60
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
             S+S   +V  +  I+ H  + +     D+ALLQL+ P+ ++RY+RPI LP    +   
Sbjct: 61  LDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPN 120
Query: 165 YSTCTAVGWGAVFEHGP--DPDHMREVQVPIL--------------PACKHYEDRIADVI 208
              CT  GWG V        P  +++++VP++              P   H+     D++
Sbjct: 121 GLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQE--DMV 178
Query: 209 CAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVP 268
           CAG  +GG+D CQGDSGGPL CPV   +G WY+ G+VS G+ C   N PGVYT  S +  
Sbjct: 179 CAGYVEGGKDACQGDSGGPLSCPV---EGLWYLTGIVSWGDACGARNRPGVYTLASSYAS 235
Query: 269 WLMSN 273
           W+ S 
Sbjct: 236 WIQSK 240

>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A Covalent Benzoxazole Inhibitor Length = 271

Iteration: 1
 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/245 (35%), Positives = 130/245 (53%), Gaps = 22/245 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCV-DGFEKHYFEVYAGMLR 104
           + GG  A  G WPW +++  +G   CGG ++ E WV++AAHC      K  +EV  G  +
Sbjct: 1   ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQ 60
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
             S+S   +V  +  I+ H  + +     D+ALLQL+ P+ ++RY+RPI LP    +   
Sbjct: 61  LDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPN 120
Query: 165 YSTCTAVGWGAVFEHGP--DPDHMREVQVPIL--------------PACKHYEDRIADVI 208
              CT  GWG V        P  +++++VP++              P   H+     D++
Sbjct: 121 GLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQE--DMV 178
Query: 209 CAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVP 268
           CAG  +GG+D CQGDSGGPL CPV   +G WY+ G+VS G+ C   N PGVYT  S +  
Sbjct: 179 CAGYVEGGKDACQGDSGGPLSCPV---EGLWYLTGIVSWGDACGARNRPGVYTLASSYAS 235
Query: 269 WLMSN 273
           W+ S 
Sbjct: 236 WIQSK 240

>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii Transmembrane Serine Proteinases Family Length = 232

Iteration: 1
 Score =  160 bits (404), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 132/240 (55%), Gaps = 21/240 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG + E G WPW  +L  DG   CG  +++ +W+++AAHC        F  Y    R 
Sbjct: 1   IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHC--------FTTYKNPARW 52
Query: 106 -----FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE 160
                 +  P++  R + RI++H  +K      D++L +L++P+ Y   V  +CLPD + 
Sbjct: 53  TASFGVTIKPSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASY 112
Query: 161 TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPAC-----KHYEDRIA-DVICAGMPQ 214
             +P       G+GA+   G   +H+R+ QV ++ A      + Y D I   ++CAG  +
Sbjct: 113 EFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLE 172
Query: 215 GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNS 274
           G  D CQGDSGGPL+     ++  WY+AG+VS G+ CA+PN+PGVYTRV+    W+ S +
Sbjct: 173 GKTDACQGDSGGPLVS--SDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKT 230

>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of An Inhibitory Antibody Length = 372

Iteration: 1
 Score =  159 bits (402), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/242 (37%), Positives = 129/242 (53%), Gaps = 17/242 (7%)
Query: 45  RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK--HYFEVYAGM 102
           R+VGG+   LG WPW ++L  DG   CGG +L   WV+TAAHC     +    + V+AG 
Sbjct: 117 RIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGA 176
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMF------KRAEMTNDLALLQLAAPLRYNRYVRPICLP 156
           + +   SP      V  +V H  +         E +ND+AL+ L++PL    Y++P+CLP
Sbjct: 177 VAQ--ASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLP 234
Query: 157 DVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP-----ACKHYEDRIA-DVICA 210
              +       CT  GWG    +G     ++E +VPI+          Y ++I   + CA
Sbjct: 235 AAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCA 294
Query: 211 GMPQGGRDTCQGDSGGPLLCPVPGSQG-RWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
           G P+GG D CQGDSGGP +C    S+  RW + G+VS G GCA   +PGVYT+VS F  W
Sbjct: 295 GYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREW 354
Query: 270 LM 271
           + 
Sbjct: 355 IF 356

>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The Transmembrane Serine Protease Hepsin With Covalently Bound Preferred Substrate Length = 372

Iteration: 1
 Score =  159 bits (402), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/242 (37%), Positives = 129/242 (53%), Gaps = 17/242 (7%)
Query: 45  RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK--HYFEVYAGM 102
           R+VGG+   LG WPW ++L  DG   CGG +L   WV+TAAHC     +    + V+AG 
Sbjct: 117 RIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGA 176
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMF------KRAEMTNDLALLQLAAPLRYNRYVRPICLP 156
           + +   SP      V  +V H  +         E +ND+AL+ L++PL    Y++P+CLP
Sbjct: 177 VAQ--ASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLP 234
Query: 157 DVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP-----ACKHYEDRIA-DVICA 210
              +       CT  GWG    +G     ++E +VPI+          Y ++I   + CA
Sbjct: 235 AAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCA 294
Query: 211 GMPQGGRDTCQGDSGGPLLCPVPGSQG-RWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
           G P+GG D CQGDSGGP +C    S+  RW + G+VS G GCA   +PGVYT+VS F  W
Sbjct: 295 GYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREW 354
Query: 270 LM 271
           + 
Sbjct: 355 IF 356

>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl- Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)- Methanone Length = 245

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 138/243 (56%), Gaps = 24/243 (9%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFF---HCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++A    WPW ++L   G +    CGG ++   WV+TAAHCV G +          
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCV-GPDVKDLAALRVQ 59
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
           LR       +Q+ PVSRI++H  F  A++  D+ALL+L  P++ + +V  + LP  +ET 
Sbjct: 60  LREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETF 119
Query: 163 EPYSTCTAVGWGAV--FEHGPDPDHMREVQVPI-----------LPACKHYEDRIA--DV 207
            P   C   GWG V   E  P P  +++V+VPI           L A    + RI   D+
Sbjct: 120 PPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDM 179
Query: 208 ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFV 267
           +CAG  +  RD+CQGDSGGPL+C V    G W  AGVVS GEGCA+PN PG+YTRV+ ++
Sbjct: 180 LCAGNTR--RDSCQGDSGGPLVCKV---NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYL 234
Query: 268 PWL 270
            W+
Sbjct: 235 DWI 237

>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase Length = 243

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 138/243 (56%), Gaps = 24/243 (9%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFF---HCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++A    WPW ++L   G +    CGG ++   WV+TAAHCV G +          
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCV-GPDVKDLAALRVQ 59
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
           LR       +Q+ PVSRI++H  F  A++  D+ALL+L  P++ + +V  + LP  +ET 
Sbjct: 60  LREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETF 119
Query: 163 EPYSTCTAVGWGAV--FEHGPDPDHMREVQVPI-----------LPACKHYEDRIA--DV 207
            P   C   GWG V   E  P P  +++V+VPI           L A    + RI   D+
Sbjct: 120 PPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDM 179
Query: 208 ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFV 267
           +CAG  +  RD+CQGDSGGPL+C V    G W  AGVVS GEGCA+PN PG+YTRV+ ++
Sbjct: 180 LCAGNTR--RDSCQGDSGGPLVCKV---NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYL 234
Query: 268 PWL 270
            W+
Sbjct: 235 DWI 237

>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active Sites Facing A Central Pore Length = 244

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 138/243 (56%), Gaps = 24/243 (9%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFF---HCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++A    WPW ++L   G +    CGG ++   WV+TAAHCV G +          
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCV-GPDVKDLAALRVQ 59
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
           LR       +Q+ PVSRI++H  F  A++  D+ALL+L  P++ + +V  + LP  +ET 
Sbjct: 60  LREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETF 119
Query: 163 EPYSTCTAVGWGAV--FEHGPDPDHMREVQVPI-----------LPACKHYEDRIA--DV 207
            P   C   GWG V   E  P P  +++V+VPI           L A    + RI   D+
Sbjct: 120 PPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDM 179
Query: 208 ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFV 267
           +CAG  +  RD+CQGDSGGPL+C V    G W  AGVVS GEGCA+PN PG+YTRV+ ++
Sbjct: 180 LCAGNTR--RDSCQGDSGGPLVCKV---NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYL 234
Query: 268 PWL 270
            W+
Sbjct: 235 DWI 237

>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (ala190 Upa) Length = 255

Iteration: 1
 Score =  157 bits (396), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 90/241 (37%), Positives = 128/241 (53%), Gaps = 17/241 (7%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK--HYFEVYAGML 103
           +VGG+   LG WPW ++L  DG   CGG +L   WV+TAAHC     +    + V+AG +
Sbjct: 1   IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAV 60
Query: 104 RRFSFSPTEQVRPVSRIVMHSMF------KRAEMTNDLALLQLAAPLRYNRYVRPICLPD 157
            +   SP      V  +V H  +         E +ND+AL+ L++PL    Y++P+CLP 
Sbjct: 61  AQ--ASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPA 118
Query: 158 VTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP-----ACKHYEDRIA-DVICAG 211
             +       CT  GWG    +G     ++E +VPI+          Y ++I   + CAG
Sbjct: 119 AGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAG 178
Query: 212 MPQGGRDTCQGDSGGPLLCPVPGSQG-RWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
            P+GG D CQGDSGGP +C    S+  RW + G+VS G GCA   +PGVYT+VS F  W+
Sbjct: 179 YPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWI 238
Query: 271 M 271
Sbjct: 239 F 239

>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN Length = 245

Iteration: 1
 Score =  155 bits (391), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/243 (40%), Positives = 136/243 (55%), Gaps = 24/243 (9%)
Query: 46  VVGGKKAELGAWPWLIAL-YRDGFF--HCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++A    WPW ++L  RD ++   CGG ++   WV+TAAHCV G +          
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCV-GPDVKDLATLRVQ 59
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
           LR       +Q+ PVSRI++H  F   +   D+ALL+L  P+  +  V  + LP  +ET 
Sbjct: 60  LREQHLYYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETF 119
Query: 163 EPYSTCTAVGWGAVF--EHGPDPDHMREVQVPI-----------LPACKHYEDRIA--DV 207
            P   C   GWG V   E  P P  +++V+VPI           L A    + RI   D+
Sbjct: 120 PPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDM 179
Query: 208 ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFV 267
           +CAG  Q  RD+CQGDSGGPL+C V    G W  AGVVS GEGCA+PN PG+YTRV+ ++
Sbjct: 180 LCAGNSQ--RDSCQGDSGGPLVCKV---NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYL 234
Query: 268 PWL 270
            W+
Sbjct: 235 DWI 237

>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human Plasma Coagulation Factor Xi Zymogen Length = 625

Iteration: 1
 Score =  154 bits (389), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 83/240 (34%), Positives = 124/240 (51%), Gaps = 12/240 (5%)
Query: 45  RVVGGKKAELGAWPWLIALYRDGFFH---CGGVVLDESWVMTAAHCVDGFEK-HYFEVYA 100
           R+VGG  +  G WPW + L+         CGG ++   W++TAAHC  G E      VY+
Sbjct: 387 RIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYS 446
Query: 101 GMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE 160
           G+L +           V  I++H  +K AE   D+ALL+L   + Y    RPICLP   +
Sbjct: 447 GILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGD 506
Query: 161 TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDR--IADVICAGMPQG 215
               Y+ C   GWG         + +++ ++P++    C K Y        +ICAG  +G
Sbjct: 507 RNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREG 566
Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           G+D C+GDSGGPL C        W++ G+ S GEGCA+   PGVYT V ++V W++  ++
Sbjct: 567 GKDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 623

>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Ecotinm84r Length = 238

Iteration: 1
 Score =  154 bits (389), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 123/239 (51%), Gaps = 12/239 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFH---CGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           +VGG  +  G WPW + L+         CGG ++   W++TAAHC  G E      VY+G
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
           +L +           V  I++H  +K AE   D+ALL+L   + Y    RPICLP   + 
Sbjct: 61  ILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDR 120
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDR--IADVICAGMPQGG 216
              Y+ C   GWG         + +++ ++P++    C K Y        +ICAG  +GG
Sbjct: 121 NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGG 180
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           +D C+GDSGGPL C        W++ G+ S GEGCA+   PGVYT V ++V W++  ++
Sbjct: 181 KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 236

>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The Coagulation Factor Xia In Complex With Benzamidine (s434a- T475a-k437 Mutant) Length = 238

Iteration: 1
 Score =  154 bits (388), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 124/239 (51%), Gaps = 12/239 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFH---CGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           +VGG  +  G WPW + L+         CGG ++   W++TAAHC  G E      VY+G
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
           +L +   +       V  I++H  +K AE   D+ALL+L   + Y    RPICLP   + 
Sbjct: 61  ILNQAEIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDR 120
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDR--IADVICAGMPQGG 216
              Y+ C   GWG         + +++ ++P++    C K Y        +ICAG  +GG
Sbjct: 121 NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGG 180
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           +D C+GDSGGPL C        W++ G+ S GEGCA+   PGVYT V ++V W++  ++
Sbjct: 181 KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 236

>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant D216g Length = 245

Iteration: 1
 Score =  153 bits (387), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 136/243 (55%), Gaps = 24/243 (9%)
Query: 46  VVGGKKAELGAWPWLIAL-YRDGFF--HCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++A    WPW ++L  RD ++   CGG ++   WV+TAAHCV G +          
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCV-GPDVKDLATLRVQ 59
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
           LR       +Q+ PVSRI++H  F   +   D+ALL+L  P+  +  V  + LP  +ET 
Sbjct: 60  LREQHLYYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETF 119
Query: 163 EPYSTCTAVGWGAVF--EHGPDPDHMREVQVPI-----------LPACKHYEDRIA--DV 207
            P   C   GWG V   E  P P  +++V+VPI           L A    + RI   D+
Sbjct: 120 PPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDM 179
Query: 208 ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFV 267
           +CAG  Q  RD+C+GDSGGPL+C V    G W  AGVVS GEGCA+PN PG+YTRV+ ++
Sbjct: 180 LCAGNSQ--RDSCKGDSGGPLVCKV---NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYL 234
Query: 268 PWL 270
            W+
Sbjct: 235 DWI 237

>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-K505 Mutant) Length = 238

Iteration: 1
 Score =  153 bits (387), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 123/239 (51%), Gaps = 12/239 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFH---CGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           +VGG  +  G WPW + L+         CGG ++   W++TAAHC  G E      VY+G
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
           +L +           V  I++H  +K AE   D+ALL+L   + Y    RPICLP   + 
Sbjct: 61  ILNQAEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDR 120
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDR--IADVICAGMPQGG 216
              Y+ C   GWG         + +++ ++P++    C K Y        +ICAG  +GG
Sbjct: 121 NVIYTDCWVTGWGYRALRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGG 180
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           +D C+GDSGGPL C        W++ G+ S GEGCA+   PGVYT V ++V W++  ++
Sbjct: 181 KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 236

>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Mutated Ecotin Length = 238

Iteration: 1
 Score =  153 bits (386), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 123/239 (51%), Gaps = 12/239 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFH---CGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           +VGG  +  G WPW + L+         CGG ++   W++TAAHC  G E      VY+G
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
           +L +           V  I++H  +K AE   D+ALL+L   + Y    RPICLP   + 
Sbjct: 61  ILNQAEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPICLPSKGDR 120
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDR--IADVICAGMPQGG 216
              Y+ C   GWG         + +++ ++P++    C K Y        +ICAG  +GG
Sbjct: 121 NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGG 180
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           +D C+GDSGGPL C        W++ G+ S GEGCA+   PGVYT V ++V W++  ++
Sbjct: 181 KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 236

>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With Clavatadine A Length = 238

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 122/239 (51%), Gaps = 12/239 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFH---CGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           +VGG  +  G WPW + L+         CGG ++   W++TAAHC  G E      VY+G
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
           +L +           V  I++H  +K AE   D+ALL+L   + Y    RPI LP   E 
Sbjct: 61  ILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGER 120
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDR--IADVICAGMPQGG 216
              Y+ C   GWG         + +++ ++P++    C K Y        +ICAG  +GG
Sbjct: 121 NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGG 180
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           +D C+GDSGGPL C        W++ G+ S GEGCA+   PGVYT V ++V W++  ++
Sbjct: 181 KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 236

>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4- Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole Length = 238

Iteration: 1
 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 123/239 (51%), Gaps = 12/239 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFH---CGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           +VGG  +  G WPW + L+         CGG ++   W++TAAHC  G E      VY+G
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
           +L +   +       V  I++H  +K AE   D+ALL+L   + Y    RPI LP   + 
Sbjct: 61  ILNQSEIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDR 120
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDR--IADVICAGMPQGG 216
              Y+ C   GWG         + +++ ++P++    C K Y        +ICAG  +GG
Sbjct: 121 NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGG 180
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           +D C+GDSGGPL C        W++ G+ S GEGCA+   PGVYT V ++V W++  ++
Sbjct: 181 KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 236

>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole Inhibitor Length = 238

Iteration: 1
 Score =  150 bits (380), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 122/239 (51%), Gaps = 12/239 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFH---CGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           +VGG  +  G WPW + L+         CGG ++   W++TAAHC  G E      VY+G
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
           +L +           V  I++H  +K AE   D+ALL+L   + Y    RPI LP   + 
Sbjct: 61  ILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGDR 120
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDR--IADVICAGMPQGG 216
              Y+ C   GWG         + +++ ++P++    C K Y        +ICAG  +GG
Sbjct: 121 NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGG 180
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           +D C+GDSGGPL C        W++ G+ S GEGCA+   PGVYT V ++V W++  ++
Sbjct: 181 KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 236

>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With 2-Guanidino-1-(4-(4,4,5,5- Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl Nicotinate Length = 237

Iteration: 1
 Score =  150 bits (379), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 123/239 (51%), Gaps = 12/239 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFH---CGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           +VGG  +  G WPW + L+         CGG ++   W++TAAHC  G E      VY+G
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
           +L +   +       V  I++H  +K AE   D+ALL+L   + Y    RPI LP   + 
Sbjct: 61  ILNQAEIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDR 120
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDR--IADVICAGMPQGG 216
              Y+ C   GWG         + +++ ++P++    C K Y        +ICAG  +GG
Sbjct: 121 NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGG 180
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           +D C+GDSGGPL C        W++ G+ S GEGCA+   PGVYT V ++V W++  ++
Sbjct: 181 KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 236

>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-C482s-K437a Mutant) Length = 238

Iteration: 1
 Score =  150 bits (379), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 123/239 (51%), Gaps = 12/239 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFH---CGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           +VGG  +  G WPW + L+         CGG ++   W++TAAHC  G E      VY+G
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
           +L +   +       V  I++H  +K AE   D+ALL+L   + Y    RPI LP   + 
Sbjct: 61  ILNQAEIAEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDR 120
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDR--IADVICAGMPQGG 216
              Y+ C   GWG         + +++ ++P++    C K Y        +ICAG  +GG
Sbjct: 121 NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGG 180
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           +D C+GDSGGPL C        W++ G+ S GEGCA+   PGVYT V ++V W++  ++
Sbjct: 181 KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 236

>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure Analysis And Refinement Of A New Crystal Form At 1.8 Angstroms Resolution Length = 245

Iteration: 1
 Score =  150 bits (379), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 84/239 (35%), Positives = 131/239 (54%), Gaps = 15/239 (6%)
Query: 39  PIL-GSGRVVGGKKAELGAWPWLIALY-RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYF 96
           P+L G  R+V G++A  G+WPW ++L  + GF  CGG +++E+WV+TAAHC  G      
Sbjct: 8   PVLSGLSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHC--GVTTSDV 65
Query: 97  EVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLP 156
            V AG   + S S   Q   ++++  +S +    + ND+ LL+L+    +++ V  +CLP
Sbjct: 66  -VVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLP 124
Query: 157 DVTETPEPYSTCTAVGWGAV-FEHGPDPDHMREVQVPILP--ACKHY-EDRIAD-VICAG 211
             ++     +TC   GWG   + +   PD +++  +P+L    CK Y   +I D +ICAG
Sbjct: 125 SASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAG 184
Query: 212 MPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
               G  +C GDSGGPL+C      G W + G+VS G      + PGVY RV+  V W+
Sbjct: 185 AS--GVSSCMGDSGGPLVCK---KNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWV 238

>pdb|1LTO|A Chain A, Human Alpha1-Tryptase Length = 245

Iteration: 1
 Score =  150 bits (378), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 96/243 (39%), Positives = 135/243 (55%), Gaps = 24/243 (9%)
Query: 46  VVGGKKAELGAWPWLIAL-YRDGFF--HCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++A    WPW ++L  RD ++   CGG ++   WV+TAAHC+ G +          
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCL-GPDVKDLATLRVQ 59
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
           LR       +Q+ PVSRI++H  F   +   D+ALL+L  P+  +  V  + LP  +ET 
Sbjct: 60  LREQHLYYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETF 119
Query: 163 EPYSTCTAVGWGAV--FEHGPDPDHMREVQVPI-----------LPACKHYEDRIA--DV 207
            P   C   GWG V   E  P P  +++V+VPI           L A    + RI   D+
Sbjct: 120 PPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDM 179
Query: 208 ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFV 267
           +CAG  Q  RD+C+GDSGGPL+C V    G W  AGVVS  EGCA+PN PG+YTRV+ ++
Sbjct: 180 LCAGNSQ--RDSCKGDSGGPLVCKV---NGTWLQAGVVSWDEGCAQPNRPGIYTRVTYYL 234
Query: 268 PWL 270
            W+
Sbjct: 235 DWI 237

>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Kunitz Protease Inhibitor Domain Of Protease Nexin Ii Length = 237

Iteration: 1
 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 122/239 (51%), Gaps = 12/239 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFH---CGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           +VGG  +  G WPW + L+         CGG ++   W++TAAHC  G E      VY+G
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
           +L +           V  I++H  +K AE   D+ALL+L   + Y    RPI LP   + 
Sbjct: 61  ILNQAEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYADSQRPISLPSKGDR 120
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDR--IADVICAGMPQGG 216
              Y+ C   GWG         + +++ ++P++    C K Y        +ICAG  +GG
Sbjct: 121 NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGG 180
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           +D C+GDSGGPL C        W++ G+ S GEGCA+   PGVYT V ++V W++  ++
Sbjct: 181 KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 236

>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant Length = 235

Iteration: 1
 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/238 (36%), Positives = 129/238 (54%), Gaps = 13/238 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           VVGG+ A+ G +PW + L       CGG +++E W++TAAHCV+   K    V AG    
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVK--ITVVAGEHNI 58
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAPLRYNRYVRPICLPD--VTET 161
                TEQ R V RI+ H  F  A  T  +D+ALL+L  PL  N YV PIC+ D   T  
Sbjct: 59  EETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNI 118
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDR----IADVICAGMPQGGR 217
              + +    GWG VF  G     ++ ++VP++               ++ CAG  +GGR
Sbjct: 119 FLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGR 178
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           D+CQGDSGGP +  V G+    ++ G++S GE CA   + G+YT+VS++V W+   ++
Sbjct: 179 DSCQGDSGGPHVTEVEGTS---FLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTK 233

>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 237

Iteration: 1
 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/245 (37%), Positives = 132/245 (53%), Gaps = 36/245 (14%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG K E  + PW +A+YR   + CGGV+LD +WV+TAAHC D      ++V+ G    
Sbjct: 1   IVGGFKCEKNSQPWHVAVYRYTQYLCGGVLLDPNWVLTAAHCYDD----NYKVWLGKNNL 56
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEM-----------TNDLALLQLAAPLRYNRYVRPIC 154
           F   P+ Q R VS+ + H  F  + M           +NDL LL+L+ P      V+PI 
Sbjct: 57  FKDEPSAQHRFVSKAIPHPGFNMSLMRKHIRFLEYDYSNDLMLLRLSKPADITDTVKPIT 116
Query: 155 LPDVTETPEPYSTCTAVGWGAV----FEHGPDPDHMREVQVPILP----ACKHYEDRIAD 206
           LP  TE P+  STC A GWG++    F+     D +  V + +LP    A  H E     
Sbjct: 117 LP--TEEPKLGSTCLASGWGSITPTKFQF---TDDLYCVNLKLLPNEDCAKAHIEKVTDA 171
Query: 207 VICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQ 265
           ++CAG   GG+DTC+GDSGGPL+C          + G+ S G   C  P+ PGVYT++++
Sbjct: 172 MLCAGEMDGGKDTCKGDSGGPLIC-------DGVLQGITSWGHTPCGEPDMPGVYTKLNK 224
Query: 266 FVPWL 270
           F  W+
Sbjct: 225 FTSWI 229

>pdb|1PFX|C Chain C, Porcine Factor Ixa Length = 235

Iteration: 1
 Score =  148 bits (373), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 83/238 (34%), Positives = 130/238 (54%), Gaps = 13/238 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG+ A+ G +PW + L       CGG +++E WV+TAAHC++   K    V AG    
Sbjct: 1   IVGGENAKPGQFPWQVLLNGKIDAFCGGSIINEKWVVTAAHCIEPGVK--ITVVAGEYNT 58
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRA--EMTNDLALLQLAAPLRYNRYVRPICLPD--VTET 161
               PTEQ R V R + H  +     + ++D+ALL+L  PL  N YV PIC+ D   T  
Sbjct: 59  EETEPTEQRRNVIRAIPHHSYNATVNKYSHDIALLELDEPLTLNSYVTPICIADKEYTNI 118
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDR----IADVICAGMPQGGR 217
              + +    GWG VF  G     ++ ++VP++              +++ CAG  +GG+
Sbjct: 119 FLKFGSGYVSGWGRVFNRGRSATILQYLKVPLVDRATCLRSTKFTIYSNMFCAGFHEGGK 178
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           D+CQGDSGGP +  V G+    ++ G++S GE CA   + G+YT+VS++V W+   ++
Sbjct: 179 DSCQGDSGGPHVTEVEGTS---FLTGIISWGEECAVKGKYGIYTKVSRYVNWIKEKTK 233

>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Length = 235

Iteration: 1
 Score =  147 bits (372), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 88/238 (36%), Positives = 129/238 (54%), Gaps = 13/238 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           VVGG+ A+ G +PW + L       CGG +++E W++TAAHCV+   K    V AG    
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVK--ITVVAGEHNI 58
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAPLRYNRYVRPICLPD--VTET 161
                TEQ R V RI+ H  F  A  T  +D+ALL+L  PL  N YV PIC+ D   T  
Sbjct: 59  EETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNI 118
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDR----IADVICAGMPQGGR 217
              + +    GWG VF  G     ++ ++VP++               ++ CAG  +GGR
Sbjct: 119 FLKFGSGYVSGWGRVFHKGRAALVLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGR 178
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           D+CQGDSGGP +  V G+    ++ G++S GE CA   + G+YT+VS++V W+   ++
Sbjct: 179 DSCQGDSGGPHVTEVEGTS---FLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTK 233

>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant Length = 235

Iteration: 1
 Score =  147 bits (371), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/238 (36%), Positives = 129/238 (54%), Gaps = 13/238 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           VVGG+ A+ G +PW + L       CGG +++E W++TAAHCV+   K    V AG    
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVK--ITVVAGEHNI 58
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAPLRYNRYVRPICLPD--VTET 161
                TEQ R V RI+ H  +  A  T  +D+ALL+L  PL  N YV PIC+ D   T  
Sbjct: 59  EETEHTEQKRNVIRIIPHHNYNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNI 118
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDR----IADVICAGMPQGGR 217
              + +    GWG VF  G     ++ ++VP++               ++ CAG  +GGR
Sbjct: 119 FLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGR 178
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           D+CQGDSGGP +  V G+    ++ G++S GE CA   + G+YT+VS++V W+   ++
Sbjct: 179 DSCQGDSGGPHVTEVEGTS---FLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTK 233

>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino Benzamidine Length = 235

Iteration: 1
 Score =  147 bits (370), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 86/238 (36%), Positives = 129/238 (54%), Gaps = 13/238 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           VVGG+ A+ G +PW + L       CGG +++E W++TAAHCV+   K    V AG    
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVK--ITVVAGEHNI 58
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRA--EMTNDLALLQLAAPLRYNRYVRPICLPD--VTET 161
                TEQ R V RI+ H  +  A  +  +D+ALL+L  PL  N YV PIC+ D   T  
Sbjct: 59  EETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNI 118
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDR----IADVICAGMPQGGR 217
              + +    GWG VF  G     ++ ++VP++               ++ CAG  +GGR
Sbjct: 119 FLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGR 178
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           D+CQGDSGGP +  V G+    ++ G++S GE CA   + G+YT+VS++V W+   ++
Sbjct: 179 DSCQGDSGGPHVTEVEGTS---FLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTK 233

>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To A Peptidyl Chloromethyl Ketone Inhibitor Length = 230

Iteration: 1
 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 126/231 (54%), Gaps = 14/231 (6%)
Query: 46  VVGGKKAELGAWPWLIALY-RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           +V G++A  G+WPW ++L  + GF  CGG +++E+WV+TAAHC  G       V AG   
Sbjct: 1   IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHC--GVTTSDV-VVAGEFD 57
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
           + S S   Q   ++++  +S +    + ND+ LL+L+    +++ V  +CLP  ++    
Sbjct: 58  QGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAA 117
Query: 165 YSTCTAVGWGAV-FEHGPDPDHMREVQVPILP--ACKHY-EDRIAD-VICAGMPQGGRDT 219
            +TC   GWG   + +   PD +++  +P+L    CK Y   +I D +ICAG    G  +
Sbjct: 118 GTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGAS--GVSS 175
Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           C GDSGGPL+C      G W + G+VS G      + PGVY RV+  V W+
Sbjct: 176 CMGDSGGPLVCK---KNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWV 223

>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa- Pentasaccharide Complex Length = 235

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/238 (35%), Positives = 129/238 (54%), Gaps = 13/238 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           VVGG+ A+ G +PW + L       CGG +++E W++TAAHCV+   K    V AG    
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVK--ITVVAGEHNI 58
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRA--EMTNDLALLQLAAPLRYNRYVRPICLPD--VTET 161
                TEQ R V RI+ H  +  A  +  +D+ALL+L  PL  N YV PIC+ D   T  
Sbjct: 59  EETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNI 118
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDR----IADVICAGMPQGGR 217
              + +    GWG VF  G     ++ ++VP++               ++ CAG  +GGR
Sbjct: 119 FLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGR 178
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           D+CQGD+GGP +  V G+    ++ G++S GE CA   + G+YT+VS++V W+   ++
Sbjct: 179 DSCQGDAGGPHVTEVEGTS---FLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTK 233

>pdb|1BUI|B Chain B, Structure Of The Ternary Microplasmin-Staphylokinase-Microplasmin Complex: A Proteinase-Cofactor-Substrate Complex In Action Length = 250

Iteration: 1
 Score =  144 bits (363), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 91/238 (38%), Positives = 127/238 (53%), Gaps = 24/238 (10%)
Query: 44  GRVVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           GRVVGG  A   +WPW ++L  R G   CGG ++   WV+TAAHC++   +   ++V  G
Sbjct: 19  GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILG 78
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
             +  +  P  Q   VSR+ +    K      D+ALL+L++P      V P CLP     
Sbjct: 79  AHQEVNLEPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNYV 132
Query: 162 PEPYSTCTAVGWG---AVFEHGPDPDHMREVQVPIL--PACKHYE---DRIADV-ICAGM 212
               + C   GWG     F  G     ++E Q+P++    C  YE    R+    +CAG 
Sbjct: 133 VADRTECFITGWGETQGTFGAG----LLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGH 188
Query: 213 PQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             GG D+CQGDSGGPL+C     + ++ + GV S G GCARPN+PGVY RVS+FV W+
Sbjct: 189 LAGGTDSCQGDSGGPLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 243

>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex Length = 247

Iteration: 1
 Score =  144 bits (363), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 91/238 (38%), Positives = 127/238 (53%), Gaps = 24/238 (10%)
Query: 44  GRVVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           GRVVGG  A   +WPW ++L  R G   CGG ++   WV+TAAHC++   +   ++V  G
Sbjct: 16  GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILG 75
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
             +  +  P  Q   VSR+ +    K      D+ALL+L++P      V P CLP     
Sbjct: 76  AHQEVNLEPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNYV 129
Query: 162 PEPYSTCTAVGWG---AVFEHGPDPDHMREVQVPIL--PACKHYE---DRIADV-ICAGM 212
               + C   GWG     F  G     ++E Q+P++    C  YE    R+    +CAG 
Sbjct: 130 VADRTECFITGWGETQGTFGAG----LLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGH 185
Query: 213 PQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             GG D+CQGDSGGPL+C     + ++ + GV S G GCARPN+PGVY RVS+FV W+
Sbjct: 186 LAGGTDSCQGDSGGPLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 240

>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human Plasminogen Length = 791

Iteration: 1
 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/243 (37%), Positives = 128/243 (52%), Gaps = 24/243 (9%)
Query: 39  PILGSGRVVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYF 96
           P    GRVVGG  A   +WPW ++L  R G   CGG ++   WV+TAAHC++   +   +
Sbjct: 555 PKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSY 614
Query: 97  EVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLP 156
           +V  G  +  +  P  Q   VSR+ +    K      D+ALL+L++P      V P CLP
Sbjct: 615 KVILGAHQEVNLEPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLP 668
Query: 157 DVTETPEPYSTCTAVGWG---AVFEHGPDPDHMREVQVPIL--PACKHYE---DRIADV- 207
                    + C   GWG     F  G     ++E Q+P++    C  YE    R+    
Sbjct: 669 SPNYVVADRTECFITGWGETQGTFGAG----LLKEAQLPVIENKVCNRYEFLNGRVQSTE 724
Query: 208 ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFV 267
           +CAG   GG D+CQGDSGGPL+C     + ++ + GV S G GCARPN+PGVY RVS+FV
Sbjct: 725 LCAGHLAGGTDSCQGDSGGPLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFV 781
Query: 268 PWL 270
            W+
Sbjct: 782 TWI 784

>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And Streptokinase Length = 250

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/238 (37%), Positives = 127/238 (53%), Gaps = 24/238 (10%)
Query: 44  GRVVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           GRVVGG  A   +WPW ++L  R G   CGG ++   WV+TAAHC++   +   ++V  G
Sbjct: 19  GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILG 78
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
             +  +  P  Q   VSR+ +    K      D+ALL+L++P      V P CLP     
Sbjct: 79  AHQEVNLEPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNYV 132
Query: 162 PEPYSTCTAVGWG---AVFEHGPDPDHMREVQVPIL--PACKHYE---DRIADV-ICAGM 212
               + C   GWG     F  G     ++E Q+P++    C  YE    R+    +CAG 
Sbjct: 133 VADRTECFITGWGETQGTFGAG----LLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGH 188
Query: 213 PQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             GG D+CQGD+GGPL+C     + ++ + GV S G GCARPN+PGVY RVS+FV W+
Sbjct: 189 LAGGTDSCQGDAGGPLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 243

>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 245

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 127/237 (53%), Gaps = 19/237 (8%)
Query: 39  PILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEV 98
           P+    ++VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V
Sbjct: 16  PVDDDDKIVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQV 70
Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV 158
             G          EQ    ++I+ H  F R  + ND+ L++L++P++ N +V  + LP  
Sbjct: 71  RLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNAHVATVALP-- 128
Query: 159 TETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPILPACK---HYEDRIAD-VICAGMP 213
           +      + C   GWG     G  +PD ++ +  P+LP       Y  +I D ++C G  
Sbjct: 129 SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFL 188
Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           +GG+D+CQGDSGGP++C          + G+VS G GCA P+ PGVYT+V  +V W+
Sbjct: 189 EGGKDSCQGDSGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWI 238

>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha Domain Complex Length = 249

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/238 (37%), Positives = 127/238 (53%), Gaps = 24/238 (10%)
Query: 44  GRVVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           GRVVGG  A   +WPW ++L  R G   CGG ++   WV+TAAHC++   +   ++V  G
Sbjct: 18  GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILG 77
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
             +  +  P  Q   VSR+ +    K      D+ALL+L++P      V P CLP     
Sbjct: 78  AHQEVNLEPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNYV 131
Query: 162 PEPYSTCTAVGWG---AVFEHGPDPDHMREVQVPIL--PACKHYE---DRIADV-ICAGM 212
               + C   GWG     F  G     ++E Q+P++    C  YE    R+    +CAG 
Sbjct: 132 VADRTECFITGWGETQGTFGAG----LLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGH 187
Query: 213 PQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             GG D+CQGD+GGPL+C     + ++ + GV S G GCARPN+PGVY RVS+FV W+
Sbjct: 188 LAGGTDSCQGDAGGPLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 242

>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain Length = 247

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/238 (37%), Positives = 127/238 (53%), Gaps = 24/238 (10%)
Query: 44  GRVVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           GRVVGG  A   +WPW ++L  R G   CGG ++   WV+TAAHC++   +   ++V  G
Sbjct: 16  GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILG 75
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
             +  +  P  Q   VSR+ +    K      D+ALL+L++P      V P CLP     
Sbjct: 76  AHQEVNLEPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNYV 129
Query: 162 PEPYSTCTAVGWG---AVFEHGPDPDHMREVQVPIL--PACKHYE---DRIADV-ICAGM 212
               + C   GWG     F  G     ++E Q+P++    C  YE    R+    +CAG 
Sbjct: 130 VADRTECFITGWGETQGTFGAG----LLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGH 185
Query: 213 PQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             GG D+CQGD+GGPL+C     + ++ + GV S G GCARPN+PGVY RVS+FV W+
Sbjct: 186 LAGGTDSCQGDAGGPLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 240

>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen With Alpha Domain Of Streptokinase In The Presence Cadmium Ions Length = 248

Iteration: 1
 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/238 (37%), Positives = 127/238 (53%), Gaps = 24/238 (10%)
Query: 44  GRVVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           GRVVGG  A   +WPW ++L  R G   CGG ++   WV+TAAHC++   +   ++V  G
Sbjct: 17  GRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILG 76
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
             +  +  P  Q   VSR+ +    K      D+ALL+L++P      V P CLP     
Sbjct: 77  AHQEVNLEPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNYV 130
Query: 162 PEPYSTCTAVGWG---AVFEHGPDPDHMREVQVPIL--PACKHYE---DRIADV-ICAGM 212
               + C   GWG     F  G     ++E Q+P++    C  YE    R+    +CAG 
Sbjct: 131 VADRTECFITGWGETQGTFGAG----LLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGH 186
Query: 213 PQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             GG D+CQGD+GGPL+C     + ++ + GV S G GCARPN+PGVY RVS+FV W+
Sbjct: 187 LAGGTDSCQGDAGGPLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 241

>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen Length = 246

Iteration: 1
 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/238 (38%), Positives = 127/238 (53%), Gaps = 24/238 (10%)
Query: 44  GRVVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           GRVVGG  A   +WPW ++L  R G   CGG ++   WV+TAAHC++   +   ++V  G
Sbjct: 15  GRVVGGCVAHPHSWPWQVSLRTRFGQHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILG 74
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
             +  +  P  Q   VSR+ +    K      D+ALL+L++P      V P CLP     
Sbjct: 75  AHQEVNLEPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNYM 128
Query: 162 PEPYSTCTAVGWG---AVFEHGPDPDHMREVQVPIL--PACKHYE---DRIADV-ICAGM 212
               + C   GWG     F  G     ++E Q+P++    C  YE    R+    +CAG 
Sbjct: 129 VADRTECFITGWGETQGTFGAG----LLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGH 184
Query: 213 PQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             GG D+CQGDSGGPL+C     + ++ + GV S G GCARPN+PGVY RVS+FV W+
Sbjct: 185 LAGGTDSCQGDSGGPLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 239

>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 233

Iteration: 1
 Score =  140 bits (354), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 126/239 (52%), Gaps = 19/239 (7%)
Query: 39  PILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEV 98
           P+    ++VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V
Sbjct: 4   PVDDDDKIVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQV 58
Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV 158
             G          EQ    ++I+ H  F R  + ND+ L++L++P++ N  V  + LP  
Sbjct: 59  RLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP-- 116
Query: 159 TETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPILPACK---HYEDRIAD-VICAGMP 213
           +      + C   GWG     G  +PD ++ +  P+LP       Y  +I D ++C G  
Sbjct: 117 SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFL 176
Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           +GG+D+CQGD+GGP++C          + G+VS G GCA P+ PGVYT+V  +V W+  
Sbjct: 177 EGGKDSCQGDAGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 228

>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 233

Iteration: 1
 Score =  140 bits (353), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 125/238 (52%), Gaps = 19/238 (7%)
Query: 39  PILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEV 98
           P+     +VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V
Sbjct: 4   PVDDDDAIVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQV 58
Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV 158
             G          EQ    ++I+ H  F R  + ND+ L++L++P++ N  V  + LP  
Sbjct: 59  RLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP-- 116
Query: 159 TETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPILPACK---HYEDRIAD-VICAGMP 213
           +      + C   GWG     G  +PD ++ +  P+LP       Y  +I D ++C G  
Sbjct: 117 SSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFL 176
Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLM 271
           +GG+D+CQGDSGGP++C          + G+VS G GCA P+ PGVYT+V  +V W+ 
Sbjct: 177 EGGKDSCQGDSGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQ 227

>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With D-Phe-Pro-Arg- Chloromethylketone Length = 228

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/235 (35%), Positives = 125/235 (53%), Gaps = 21/235 (8%)
Query: 46  VVGGKKAELGAWPW---LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG   + G  PW   LI    +GF  CGG +L E +++TAAHC+  ++   F+V  G 
Sbjct: 1   IVGGYNCKDGEVPWQALLINEENEGF--CGGTILSEFYILTAAHCL--YQAKRFKVRVGD 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
                    E V  V  ++ H+ F +     D+A+L+L  P+ +   V P  LP  T  P
Sbjct: 57  RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLP--TAPP 114
Query: 163 EPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILPACK---HYEDRI-ADVICAGMPQGGR 217
              + C   GWG     G D PD ++ +  P+L   K    Y  +I +++ C G  +GG+
Sbjct: 115 ATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGK 174
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           D+CQGDSGGP++C          + GVVS G+GCA+ N+PGVYT+V  +V W+ +
Sbjct: 175 DSCQGDSGGPVVC-------NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKN 222

>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (bpti) Length = 224

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 123/230 (53%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   E  + P+ ++L   G+  CGG +++E WV++A HC     K   +V  G    
Sbjct: 1   IVGGYNCEENSVPYQVSL-NSGYHFCGGSLINEQWVVSAGHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  + R  + ND+ L++L++    N +V  I LP  T  P   
Sbjct: 56  EVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINAHVSTISLP--TAPPATG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACK---HYEDRI-ADVICAGMPQGGRDTC 220
           + C   GWG     G D PD ++ +  P+L   K    Y  +I +++ C G  +GG+D+C
Sbjct: 114 TKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGD+GGP++C          + GVVS G+GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDAGGPVVC-------NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWI 216

>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected Phosphorylation Of Tyrosine 151 Length = 224

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   E  + P+ ++L   G+  CGG +++E WV++A HC     K   +V  G    
Sbjct: 1   IVGGYNCEENSVPYQVSL-NSGYHFCGGSLINEQWVVSAGHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  + R  + ND+ L++L++    N  V  I LP  T  P   
Sbjct: 56  EVLEGNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINARVSTISLP--TAPPATG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACK---HYEDRI-ADVICAGMPQGGRDTC 220
           + C   GWG     G D PD ++ +  P+L   K    Y  +I +++ C G  +GG+D+C
Sbjct: 114 TKCLISGWGNTASSGADXPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C          + GVVS G+GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-------NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWI 216

>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant Length = 247

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/238 (37%), Positives = 125/238 (52%), Gaps = 24/238 (10%)
Query: 44  GRVVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           G VVGG  A   +WPW ++L  R G   CGG ++   WV+TAAHC++   +   ++V  G
Sbjct: 16  GAVVGGCVAYPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILG 75
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
             +  +  P  Q   VSR+ +    K      D+ALL+L++P      V P CLP     
Sbjct: 76  AHQEVNLEPHVQEIEVSRLFLEPTRK------DIALLKLSSPAVITDKVIPACLPSPNYV 129
Query: 162 PEPYSTCTAVGWG---AVFEHGPDPDHMREVQVPIL--PACKHYE---DRIADV-ICAGM 212
               + C   GWG     F  G     + E Q+P++    C  YE    R+    +CAG 
Sbjct: 130 VADRTECFITGWGETQGTFGAG----LLMEAQLPVIENKVCNRYEFLNGRVQSTELCAGH 185
Query: 213 PQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             GG D+CQGDSGGPL+C     + ++ + GV S G GCARPN+PGVY RVS+FV W+
Sbjct: 186 LAGGTDSCQGDSGGPLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 240

>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 223

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 123/230 (53%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F R  + ND+ L++L++P++ N  V  + LP  +      
Sbjct: 56  NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP--SSCAPAG 113
Query: 166 STCTAVGWGAVFEHG-PDPDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGRDTC 220
           + C   GWG     G  +PD ++ +  P+LP       Y  +I D ++C G  +GG+D+C
Sbjct: 114 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C          + G+VS G GCA P+ PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWI 216

>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Nickel- Bound Length = 223

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 123/230 (53%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F R  + ND+ L++L++P++ N  V  I LP  +      
Sbjct: 56  NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATIALP--SSCAPAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGRDTC 220
           + C   GWG     G + PD ++ +  P+LP       Y  +I D ++C G  +GG+D+C
Sbjct: 114 TQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C          + G+VS G GCA P+ PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWI 216

>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar Spermatozoa Length = 263

Iteration: 1
 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/250 (35%), Positives = 129/250 (51%), Gaps = 25/250 (10%)
Query: 46  VVGGKKAELGAWPWLIAL-----YRDGFFH-CGGVVLDESWVMTAAHCVDGFEKHY---- 95
           VVGG  AE GAWPW+++L     + +  +H CGG++L+  WV+TAAHC    +K      
Sbjct: 1   VVGGMSAEPGAWPWMVSLQIFMYHNNRRYHTCGGILLNSHWVLTAAHCFKNKKKVTDWRL 60
Query: 96  ----FEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVR 151
                EV  G  +     P  Q R V  I++H  +      ND+AL+++  P+    ++ 
Sbjct: 61  IFGANEVVWGSNK--PVKPPLQERFVEEIIIHEKYVSGLEINDIALIKITPPVPCGPFIG 118
Query: 152 PICLPDVTE-TPEPYSTCTAVGWGAVFEHGPDPD-HMREVQVPILP-----ACKHYEDRI 204
           P CLP      P    TC   GWG + E GP     ++E +V ++      + + Y  RI
Sbjct: 119 PGCLPQFKAGPPRAPQTCWVTGWGYLKEKGPRTSPTLQEARVALIDLELCNSTRWYNGRI 178
Query: 205 ADV-ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRV 263
               +CAG P+G  DTCQGDSGGPL+C    ++  + V G+ S G GCAR   PGVYT  
Sbjct: 179 RSTNVCAGYPRGKIDTCQGDSGGPLMC-RDRAENTFVVVGITSWGVGCARAKRPGVYTST 237
Query: 264 SQFVPWLMSN 273
             ++ W+ S 
Sbjct: 238 WPYLNWIASK 247

>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon Length = 222

Iteration: 1
 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 122/231 (52%), Gaps = 18/231 (7%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG + +  + P  ++L   G+  CGG +++E+WV++AAHC     K   EV  G    
Sbjct: 1   IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                +EQ    SR++ H  +    + ND+ L++L+ P   N YV+P+ LP  T      
Sbjct: 56  KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP--TSCAPAG 113
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKH-YEDRIAD-VICAGMPQGGRDTCQ 221
           + CT  GWG       D + ++ + +PIL    C + Y   I + + CAG  +GG+D+CQ
Sbjct: 114 TMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQ 173
Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           GDSGGP++C          + GVVS G GCA P  PGVY +V  F  WL S
Sbjct: 174 GDSGGPVVC-------NGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTS 217

>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations, X-Ray Structures And Association Constant Measurements Length = 242

Iteration: 1
 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 124/232 (53%), Gaps = 18/232 (7%)
Query: 45  RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           ++VGG + +  + P  ++L   G+  CGG +++E+WV++AAHC     K   EV  G   
Sbjct: 20  KIVGGYECKPYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHN 74
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
                 +EQ    SR++ H  +    + ND+ L++L+ P   N YV+P+ LP  T     
Sbjct: 75  IKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP--TSCAPA 132
Query: 165 YSTCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKH-YEDRIAD-VICAGMPQGGRDTC 220
            + CT  GWG       D + ++ + +PIL    C + Y   I + + CAG  +GG+D+C
Sbjct: 133 GTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSC 192
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           QGDSGGP++C      G   + GVVS G GCA P  PGVY +V  F  WL S
Sbjct: 193 QGDSGGPVVC-----NGE--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTS 237

>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Zinc-Bound Length = 223

Iteration: 1
 Score =  138 bits (347), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 123/230 (53%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F R  + ND+ L++L++P++ N  V  + LP  +      
Sbjct: 56  NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP--SSCAPAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGRDTC 220
           + C   GWG     G + PD ++ +  P+LP       Y  +I D ++C G  +GG+D+C
Sbjct: 114 TQCLISGWGHTLSSGVNHPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C          + G+VS G GCA P+ PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWI 216

>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme) Length = 237

Iteration: 1
 Score =  137 bits (346), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/243 (37%), Positives = 128/243 (52%), Gaps = 32/243 (13%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEVYAGMLR 104
           VVGG   E  + PW +A+Y      CGGV+LD +WV+TAAHC VD      +EV+ G  +
Sbjct: 1   VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYVD-----QYEVWLGKNK 55
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKR-----------AEMTNDLALLQLAAPLRYNRYVRPI 153
            F   P+ Q R VS+   H  F             A+ ++DL LL+L+ P      V+PI
Sbjct: 56  LFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPI 115
Query: 154 CLPDVTETPEPYSTCTAVGWGAVF-EHGPDPDHMREVQVPILP---ACKHYEDRIADV-I 208
            LP  T+ P+P S C A GWG++       PD ++ V + +LP     K Y  ++ DV +
Sbjct: 116 ALP--TKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQKVTDVML 173
Query: 209 CAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFV 267
           CAG   GG+DTC+ DSGGPL+C          + G  S+G   C +P  P +YT + +F 
Sbjct: 174 CAGEMGGGKDTCRDDSGGPLIC-------DGILQGTTSYGPVPCGKPGVPAIYTNLIKFN 226
Query: 268 PWL 270
            W+
Sbjct: 227 SWI 229

>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex Length = 223

Iteration: 1
 Score =  137 bits (346), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 123/230 (53%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F R  + ND+ L++L++P++ N  V  + LP  +      
Sbjct: 56  NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP--SSCAPAG 113
Query: 166 STCTAVGWGAVFEHG-PDPDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGRDTC 220
           + C   GWG     G  +PD ++ +  P+LP       Y  +I D ++C G  +GG+D+C
Sbjct: 114 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGD+GGP++C          + G+VS G GCA P+ PGVYT+V  +V W+
Sbjct: 174 QGDAGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWI 216

>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys Length = 223

Iteration: 1
 Score =  137 bits (345), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F R  + ND+ L++L++P++ N  V  + LP  +      
Sbjct: 56  NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP--SSCAPAG 113
Query: 166 STCTAVGWGAVFEHG-PDPDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGRDTC 220
           + C   GWG     G  +PD ++ +  P+LP       Y  +I D ++C G  +GG+D+C
Sbjct: 114 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C          + G+V  G GCA P+ PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-------NGELQGIVKWGYGCALPDNPGVYTKVCNYVDWI 216

>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine Length = 241

Iteration: 1
 Score =  137 bits (345), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 128/241 (53%), Gaps = 14/241 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFH-CGGVVLDESWVMTAAHC-VD--GF---EKHYFEV 98
           VVGG  A+ G WPW ++L+  G  H CG  ++  +W+++AAHC +D  GF   +   +  
Sbjct: 1   VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 99  YAGMLRRFSFS-PTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD 157
           + G+  +   S P  Q R + RI+ H  F       D+ALL+L  P  Y+  VRPICLPD
Sbjct: 61  FLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPD 120
Query: 158 VTETPEPYSTCTAVGWGAVFEHGPDPDHMR--EVQVPILPACKHY--EDRIADVICAGMP 213
            +            GWG     G     ++  E++V     C++   +     ++C G  
Sbjct: 121 ASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVIQQTTCENLLPQQITPRMMCVGFL 180
Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
            GG D+CQGDSGGPL      + GR + AGVVS G+GCA+ N+PGVYTR+  F  W+  N
Sbjct: 181 SGGVDSCQGDSGGPL--SSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN 238
Query: 274 S 274
           +
Sbjct: 239 T 239

>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin Mutant X99rt Length = 223

Iteration: 1
 Score =  137 bits (345), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F R    ND+ L++L++P++ N  V  + LP  +      
Sbjct: 56  NVLEGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALP--SSCAPAG 113
Query: 166 STCTAVGWGAVFEHG-PDPDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGRDTC 220
           + C   GWG     G  +PD ++ +  P+LP       Y  +I D ++C G  +GG+D+C
Sbjct: 114 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C          + G+VS G GCA P+ PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWI 216

>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of Trypsin. Role Of Asp102 In Serine Protease Catalysis Length = 223

Iteration: 1
 Score =  137 bits (345), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 123/230 (53%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F R  + N++ L++L++P++ N  V  + LP  +      
Sbjct: 56  NVLEGNEQFVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVALP--SSCAPAG 113
Query: 166 STCTAVGWGAVFEHG-PDPDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGRDTC 220
           + C   GWG     G  +PD ++ +  P+LP       Y  +I D ++C G  +GG+D+C
Sbjct: 114 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C          + G+VS G GCA P+ PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWI 216

>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu Length = 223

Iteration: 1
 Score =  137 bits (345), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F R  + ND+ L++L++P++ N  V  + LP  +      
Sbjct: 56  NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP--SSCAPAG 113
Query: 166 STCTAVGWGAVFEHG-PDPDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGRDTC 220
           + C   GWG     G  +PD ++ +  P+LP       Y  +I D ++C G  +GG+D+C
Sbjct: 114 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C          + G+V  G GCA P+ PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-------NGELQGIVEWGYGCALPDNPGVYTKVCNYVDWI 216

>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (Aprotinin) Complex Length = 241

Iteration: 1
 Score =  137 bits (345), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/241 (36%), Positives = 128/241 (53%), Gaps = 14/241 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFH-CGGVVLDESWVMTAAHC-VD--GF---EKHYFEV 98
           VVGG  A+ G WPW ++L+  G  H CG  ++  +W+++AAHC +D  GF   +   +  
Sbjct: 1   VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 99  YAGMLRRFSFS-PTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD 157
           + G+  +   S P  Q R + RI+ H  F       D+ALL+L  P  Y+  VRPICLPD
Sbjct: 61  FLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPD 120
Query: 158 VTETPEPYSTCTAVGWGAVFEHGPDPDHMR--EVQVPILPACKHY--EDRIADVICAGMP 213
            +            GWG     G     ++  E++V     C++   +     ++C G  
Sbjct: 121 ASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQITPRMMCVGFL 180
Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
            GG D+CQGDSGGPL      + GR + AGVVS G+GCA+ N+PGVYTR+  F  W+  N
Sbjct: 181 SGGVDSCQGDSGGPL--SSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN 238
Query: 274 S 274
           +
Sbjct: 239 T 239

>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex With Bovine Pancreatic Trypsin Inhibitor Length = 222

Iteration: 1
 Score =  137 bits (345), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 123/231 (53%), Gaps = 18/231 (7%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG + +  + P  ++L   G+  CGG +++E+WV++AAHC     K   EV  G    
Sbjct: 1   IVGGYECKPYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                +EQ    SR++ H  +    + ND+ L++L+ P   N YV+P+ LP  T      
Sbjct: 56  KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP--TSCAPAG 113
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKH-YEDRIAD-VICAGMPQGGRDTCQ 221
           + CT  GWG       D + ++ + +PIL    C + Y   I + + CAG  +GG+D+CQ
Sbjct: 114 TMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQ 173
Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           GDSGGP++C      G   + GVVS G GCA P  PGVY +V  F  WL S
Sbjct: 174 GDSGGPVVC-----NGE--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTS 217

>pdb|1DPO|A Chain A, Structure Of Rat Trypsin Length = 223

Iteration: 1
 Score =  137 bits (344), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F R  + ND+ L++L++P++ N  V  + LP  +      
Sbjct: 56  NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP--SSCAPAG 113
Query: 166 STCTAVGWGAVFEHG-PDPDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGRDTC 220
           + C   GWG     G  +PD ++ +  P+LP       Y  +I D ++C G  +GG+D+C
Sbjct: 114 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGD GGP++C          + G+VS G GCA P+ PGVYT+V  +V W+
Sbjct: 174 QGDCGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWI 216

>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum Salmon Length = 222

Iteration: 1
 Score =  137 bits (344), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 123/231 (53%), Gaps = 18/231 (7%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG + +  + P  ++L   G+  CGG +++E+WV++AAHC     K   EV  G    
Sbjct: 1   IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                +EQ    SR++ H  +    + ND+ L++L+ P   N YV+P+ LP  +      
Sbjct: 56  KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP--SSCAPAG 113
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKH-YEDRIAD-VICAGMPQGGRDTCQ 221
           + CT  GWG       D + ++ + +PIL    C + Y   I + + CAG  +GG+D+CQ
Sbjct: 114 TMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQ 173
Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           GDSGGP++C      G   + GVVS G GCA P  PGVY +V  F  WL S
Sbjct: 174 GDSGGPVVC-----NGE--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTS 217

>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between Salmon And Bovine Trypsins Length = 222

Iteration: 1
 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 120/231 (51%), Gaps = 18/231 (7%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG + +  +    ++L   G+  CGG +++E+WV++AAHC     K   EV  G    
Sbjct: 1   IVGGYECKAYSQAHQVSL-NSGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                +EQ    SR++ H  +    + ND+ L++L+ P   N YV+P+ LP  T      
Sbjct: 56  KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP--TSCAPAG 113
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGRDTCQ 221
           + CT  GWG       D D ++ + +PIL        Y   I + + CAG  +GG+D+CQ
Sbjct: 114 TMCTVSGWGNTMSSTADSDKLQCLNIPILSYSDCNDSYPGMITNAMFCAGYLEGGKDSCQ 173
Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           GDSGGP++C      G   + GVVS G GCA P  PGVY +V  F  WL S
Sbjct: 174 GDSGGPVVC-----NGE--LQGVVSWGYGCAEPGNPGVYAKVCIFSDWLTS 217

>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a, D70a Bound To Rat Anionic Trypsin Ii Length = 223

Iteration: 1
 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 123/230 (53%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F R  + N++ L++L++P++ N  V  + LP  +      
Sbjct: 56  NVLEGDEQFVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVALP--SSCAPAG 113
Query: 166 STCTAVGWGAVFEHG-PDPDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGRDTC 220
           + C   GWG     G  +PD ++ +  P+LP       Y  +I D ++C G  +GG+D+C
Sbjct: 114 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C          + G+VS G GCA P+ PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWI 216

>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His Length = 223

Iteration: 1
 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F    + ND+ L++L++P++ N  V  + LP  +      
Sbjct: 56  NVLEGNEQFVNAAKIIKHPNFDHKTLNNDIMLIKLSSPVKLNARVATVALP--SSCAPAG 113
Query: 166 STCTAVGWGAVFEHG-PDPDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGRDTC 220
           + C   GWG     G  +PD ++ +  P+LP       Y  +I D ++C G  +GG+D+C
Sbjct: 114 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C          + G+VS G GCA P+ PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWI 216

>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 231

Iteration: 1
 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 121/229 (52%), Gaps = 19/229 (8%)
Query: 48  GGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFS 107
           GG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V  G      
Sbjct: 11  GGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINV 65
Query: 108 FSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYST 167
               EQ    ++I+ H  F R  + ND+ L++L++P++ N  V  + LP  +      + 
Sbjct: 66  LEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP--SSCAPAGTQ 123
Query: 168 CTAVGWGAVFEHG-PDPDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGRDTCQG 222
           C   GWG     G  +PD ++ +  P+LP       Y  +I D ++C G  +GG+D+CQG
Sbjct: 124 CLISGWGNTLSSGVNEPDLLKCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQG 183
Query: 223 DSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLM 271
           DSGGP++C          + G+VS G GCA P+ PGVYT+V  +V W+ 
Sbjct: 184 DSGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQ 225

>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A Second Crystal Form Length = 237

Iteration: 1
 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 123/232 (53%), Gaps = 18/232 (7%)
Query: 45  RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           ++VGG + +  +    ++L   G+  CGG +++E+WV++AAHC     K   EV  G   
Sbjct: 15  KIVGGYECKAYSQAHQVSL-NSGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHN 69
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
                 +EQ    SR++ H  +    + ND+ L++L+ P   N YV+P+ LP  T     
Sbjct: 70  IKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP--TSCAPA 127
Query: 165 YSTCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKH-YEDRIAD-VICAGMPQGGRDTC 220
            + CT  GWG       D + ++ + +PIL    C + Y   I + + CAG  +GG+D+C
Sbjct: 128 GTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSC 187
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           QGDSGGP++C      G   + GVVS G GCA P  PGVY +V  F  WL S
Sbjct: 188 QGDSGGPVVC-----NGE--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTS 232

>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex With A 1-(7-Sulphoamidoisoquinolinyl)guanidine Length = 276

Iteration: 1
 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 136/252 (53%), Gaps = 26/252 (10%)
Query: 45  RVVGGKKAELGAWPWLIALYR-----DGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEV 98
           +++GG+   +   PW  A+YR        + CGG ++   WV++A HC +D  +K  + V
Sbjct: 23  KIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIV 82
Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAP----LRYNRYVRP 152
           Y G  R  S +  E    V  +++H  +    +   ND+ALL++ +      + +R ++ 
Sbjct: 83  YLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 142
Query: 153 ICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE---------DR 203
           ICLP +   P+  ++C   G+G   E+  D  +  ++++ ++    H E         + 
Sbjct: 143 ICLPSMYNDPQFGTSCEITGFGK--ENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEV 200
Query: 204 IADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRV 263
              ++CA  PQ   D+CQGDSGGPL+C +   QGR  + G+VS G GCA  ++PGVYTRV
Sbjct: 201 TTKMLCAADPQWKTDSCQGDSGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRV 257
Query: 264 SQFVPWLMSNSE 275
           S F+PW+ S+++
Sbjct: 258 SHFLPWIRSHTK 269

>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum Salmon Length = 222

Iteration: 1
 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 123/231 (53%), Gaps = 18/231 (7%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG + +  + P  ++L   G+  CGG +++E+WV++AAHC     K   EV  G    
Sbjct: 1   IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCY----KTRVEVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                +EQ    SR++ H  +    + ND+ L++L+ P   N YV+P+ LP  +      
Sbjct: 56  KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP--SSCAPAG 113
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKH-YEDRIAD-VICAGMPQGGRDTCQ 221
           + CT  GWG       D + ++ + +PIL    C + Y   I + + CAG  +GG+D+CQ
Sbjct: 114 TMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQ 173
Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           GDSGGP++C      G   + GVVS G GCA P  PGVY +V  F  WL S
Sbjct: 174 GDSGGPVVC-----NGE--LQGVVSWGYGCAEPGNPGVYAKVCIFNNWLTS 217

>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With Ser (D189s) Length = 223

Iteration: 1
 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F R  + ND+ L++L++P++ N  V  + LP  +      
Sbjct: 56  NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP--SSCAPAG 113
Query: 166 STCTAVGWGAVFEHG-PDPDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGRDTC 220
           + C   GWG     G  +PD ++ +  P+LP       Y  +I D ++C G  +GG+ +C
Sbjct: 114 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKSSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C          + G+VS G GCA P+ PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWI 216

>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic Trypsinogen-Bpti Complex Length = 231

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 121/229 (52%), Gaps = 19/229 (8%)
Query: 48  GGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFS 107
           GG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V  G      
Sbjct: 11  GGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINV 65
Query: 108 FSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYST 167
               EQ    ++I+ H  F R  + ND+ L++L++P++ N  V  + LP  +      + 
Sbjct: 66  LEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP--SSCAPAGTQ 123
Query: 168 CTAVGWGAVFEHG-PDPDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGRDTCQG 222
           C   GWG     G  +PD ++ +  P+LP       Y  +I D ++C G  +GG+D+CQG
Sbjct: 124 CLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQG 183
Query: 223 DSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLM 271
           DSGGP++C          + G+VS G GCA P+ PGVYT+V  +V W+ 
Sbjct: 184 DSGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQ 225

>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram Spermatozoa Length = 290

Iteration: 1
 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 129/248 (52%), Gaps = 21/248 (8%)
Query: 46  VVGGKKAELGAWPWLIAL-----YRDGFFH-CGGVVLDESWVMTAAHCVDGFEK--HYFE 97
           ++GG+ A  GAWPW+++L     + +  +H CGG +L+  W++TAAHC    +K   +  
Sbjct: 1   IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRL 60
Query: 98  VYAGMLRRFS----FSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPI 153
           ++      +       P  Q R V +I++H  +  +   ND+AL+++  P+    ++ P 
Sbjct: 61  IFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPG 120
Query: 154 CLPDVTETPEPY-STCTAVGWGAVFEHGPDPDHM-REVQVPILP-----ACKHYEDRIAD 206
           CLP     P     TC   GWG + E+      M +E +V ++      + + Y  RI  
Sbjct: 121 CLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGRIRS 180
Query: 207 V-ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQ 265
             +CAG P+G  DTCQGDSGGPL+C    ++  + V G+ S G GCAR   PGVYT    
Sbjct: 181 TNVCAGYPEGKIDTCQGDSGGPLMCK-DSAENSYVVVGITSWGVGCARAKRPGVYTSTWS 239
Query: 266 FVPWLMSN 273
           ++ W+ S 
Sbjct: 240 YLNWIASK 247

>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen Activator 2-[6- (3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino- Pyrrolidin-1- Yl)-3, 5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid Complex Length = 253

Iteration: 1
 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 135/251 (53%), Gaps = 26/251 (10%)
Query: 46  VVGGKKAELGAWPWLIALYR-----DGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEVY 99
           ++GG+   +   PW  A+YR        + CGG ++   WV++A HC +D  +K  + VY
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAP----LRYNRYVRPI 153
            G  R  S +  E    V  +++H  +    +   ND+ALL++ +      + +R ++ I
Sbjct: 61  LGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTI 120
Query: 154 CLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE---------DRI 204
           CLP +   P+  ++C   G+G   E+  D  +  ++++ ++    H E         +  
Sbjct: 121 CLPSMYNDPQFGTSCEITGFGK--ENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVT 178
Query: 205 ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
             ++CA  PQ   D+CQGDSGGPL+C +   QGR  + G+VS G GCA  ++PGVYTRVS
Sbjct: 179 TKMLCAADPQWKTDSCQGDSGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRVS 235
Query: 265 QFVPWLMSNSE 275
            F+PW+ S+++
Sbjct: 236 HFLPWIRSHTK 246

>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum Salmon Length = 222

Iteration: 1
 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 124/236 (52%), Gaps = 28/236 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDG-----FEKHYFEVYA 100
           +VGG + +  + P  ++L   G+  CGG +++E+WV++AAHC          +H  +V  
Sbjct: 1   IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYKSRVAVRLGEHNIKVTE 59
Query: 101 GMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE 160
           G         +EQ    SR++ H  +    + ND+ L++L+ P   N YV+P+ LP  + 
Sbjct: 60  G---------SEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP--SS 108
Query: 161 TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKH-YEDRIAD-VICAGMPQGG 216
                + CT  GWG       D D ++ + +PIL    C + Y   I + + CAG  +GG
Sbjct: 109 CAPAGTMCTVSGWGNTMSSTADGDKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGG 168
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           +D+CQGDSGGP++C      G   + GVVS G GCA P  PGVY +V  F  WL S
Sbjct: 169 KDSCQGDSGGPVVC-----NGE--LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTS 217

>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 253

Iteration: 1
 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 135/251 (53%), Gaps = 26/251 (10%)
Query: 46  VVGGKKAELGAWPWLIALYR-----DGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEVY 99
           ++GG+   +   PW  A+YR        + CGG ++   WV++A HC +D  +K  + VY
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAP----LRYNRYVRPI 153
            G  R  S +  E    V  +++H  +    +   ND+ALL++ +      + +R ++ I
Sbjct: 61  LGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTI 120
Query: 154 CLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE---------DRI 204
           CLP +   P+  ++C   G+G   E+  D  +  ++++ ++    H E         +  
Sbjct: 121 CLPSMYNDPQFGTSCEITGFGK--ENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVT 178
Query: 205 ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
             ++CA  PQ   D+CQGDSGGPL+C +   QGR  + G+VS G GCA  ++PGVYTRVS
Sbjct: 179 TKMLCAADPQWKTDSCQGDSGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRVS 235
Query: 265 QFVPWLMSNSE 275
            F+PW+ S+++
Sbjct: 236 HFLPWIRSHTK 246

>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 134/250 (53%), Gaps = 26/250 (10%)
Query: 46  VVGGKKAELGAWPWLIALYR-----DGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEVY 99
           ++GG+   +   PW  A+YR        + CGG ++   WV++A HC +D  +K  + VY
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAP----LRYNRYVRPI 153
            G  R  S +  E    V  +++H  +    +   ND+ALL++ +      + +R ++ I
Sbjct: 61  LGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTI 120
Query: 154 CLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE---------DRI 204
           CLP +   P+  ++C   G+G   E+  D  +  ++++ ++    H E         +  
Sbjct: 121 CLPSMYNDPQFGTSCEITGFGK--ENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVT 178
Query: 205 ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
             ++CA  PQ   D+CQGDSGGPL+C +   QGR  + G+VS G GCA  ++PGVYTRVS
Sbjct: 179 TKMLCAADPQWKTDSCQGDSGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRVS 235
Query: 265 QFVPWLMSNS 274
            F+PW+ S++
Sbjct: 236 HFLPWIRSHT 245

>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 240

Iteration: 1
 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/233 (36%), Positives = 126/233 (54%), Gaps = 36/233 (15%)
Query: 58  PWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPV 117
           PW +A+YR   + CGGV+LD +WV+TAAHC +      ++V+ G        P++Q R V
Sbjct: 16  PWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYND----KYQVWLGKNNFLEDEPSDQHRLV 71
Query: 118 SRIVMHSMFKRA-----------EMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYS 166
           S+ + H  F  +           + +NDL LL+L+ P      V+PI LP  TE P+  S
Sbjct: 72  SKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLP--TEEPKLGS 129
Query: 167 TCTAVGWGAV----FEHGPDPDHMREVQVPILP---ACKHYEDRIAD-VICAGMPQGGRD 218
           TC A GWG+     F++   PD ++ V + +LP     K +E ++ D ++CAG   GG  
Sbjct: 130 TCLASGWGSTTPIKFKY---PDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSY 186
Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPWL 270
           TC+ DSGGPL+C          + G+ S G E C  P EP VYT++ +F  W+
Sbjct: 187 TCEHDSGGPLIC-------DGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWI 232

>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 133/250 (53%), Gaps = 26/250 (10%)
Query: 46  VVGGKKAELGAWPWLIALYR-----DGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEVY 99
           ++GG+   +   PW  A+YR        + CGG ++   WV++A HC +D  +K  + VY
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAP----LRYNRYVRPI 153
            G  R  S +  E    V  +++H  +    +   ND+ALL++ +      + +R ++ I
Sbjct: 61  LGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTI 120
Query: 154 CLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE---------DRI 204
           CLP +   P+  ++C   G+G   E   D  +  ++++ ++    H E         +  
Sbjct: 121 CLPSMYNDPQFGTSCEITGFGK--EQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVT 178
Query: 205 ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
             ++CA  PQ   D+CQGDSGGPL+C +   QGR  + G+VS G GCA  ++PGVYTRVS
Sbjct: 179 TKMLCAADPQWKTDSCQGDSGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRVS 235
Query: 265 QFVPWLMSNS 274
            F+PW+ S++
Sbjct: 236 HFLPWIRSHT 245

>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites Of Ser190 Trypsin-Like Serine Protease Drug Targets Length = 253

Iteration: 1
 Score =  135 bits (339), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 134/251 (53%), Gaps = 26/251 (10%)
Query: 46  VVGGKKAELGAWPWLIALYR-----DGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEVY 99
           ++GG+   +   PW  A+YR        + CGG ++   WV++A HC +D  +K  + VY
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAP----LRYNRYVRPI 153
            G  R  S +  E    V  +++H  +    +   ND+ALL++ +      + +R ++ I
Sbjct: 61  LGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTI 120
Query: 154 CLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE---------DRI 204
           CLP +   P+  ++C   G+G   E   D  +  ++++ ++    H E         +  
Sbjct: 121 CLPSMYNDPQFGTSCEITGFGK--EASTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVT 178
Query: 205 ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
             ++CA  PQ   D+CQGDSGGPL+C +   QGR  + G+VS G GCA  ++PGVYTRVS
Sbjct: 179 TKMLCAADPQWKTDSCQGDSGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRVS 235
Query: 265 QFVPWLMSNSE 275
            F+PW+ S+++
Sbjct: 236 HFLPWIRSHTK 246

>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT Length = 223

Iteration: 1
 Score =  134 bits (338), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F R    ND+ L++L++P++ N  V  + LP  +      
Sbjct: 56  NVLEGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALP--SSCAPAG 113
Query: 166 STCTAVGWGAVFEHG-PDPDHMREVQVPILPA--CKHYEDRIA--DVICAGMPQGGRDTC 220
           + C   GWG     G  +PD ++ +  P+LP   C+     I   +++C G  +GG+D C
Sbjct: 114 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASSSFIITDNMVCVGFLEGGKDAC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C          + G+VS G GCA P+ PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWI 216

>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17 Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 231

Iteration: 1
 Score =  134 bits (338), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 19/229 (8%)
Query: 48  GGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFS 107
           GG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V  G      
Sbjct: 11  GGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNINV 65
Query: 108 FSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYST 167
               EQ    ++I+ H  F R  + ND+ L++L++P++ N  V  + LP  +      + 
Sbjct: 66  LEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP--SSCAPAGTQ 123
Query: 168 CTAVGWGAVFEHG-PDPDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGRDTCQG 222
           C   GWG     G  +PD ++ +  P+LP       Y  +I D ++C G  +GG+D+CQG
Sbjct: 124 CLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQG 183
Query: 223 DSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLM 271
           +SGGP++C          + G+VS G GCA P+ PGVYT+V  +V W+ 
Sbjct: 184 NSGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQ 225

>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon Length = 220

Iteration: 1
 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 121/231 (52%), Gaps = 18/231 (7%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG + +  + P  ++L   G+  CGG +++E+WV++AAHC     K   EV  G    
Sbjct: 1   IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                +EQ    SR++ H  +    + ND+ L++L+     N YV+P+ LP  +      
Sbjct: 56  KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKSATLNTYVQPVALP--SSCAPAG 113
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKH-YEDRIAD-VICAGMPQGGRDTCQ 221
           + CT  GWG       D + ++ + +PIL    C + Y   I + + CAG  +GG+D+CQ
Sbjct: 114 TMCTVSGWGNTMSSTADKNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQ 173
Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           GDSGGP++C          + GVVS G GCA P  PGVY +V  F  WL S
Sbjct: 174 GDSGGPVVC-------NGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTS 217

>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 224

Iteration: 1
 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 121/230 (52%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   E  + P+ ++L   G+  CGG ++ E WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCEENSLPYQVSL-NSGYHFCGGSLISEQWVVSAAHCY----KTRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  + R  + ND+ L++L++P   N  V  I LP  T  P   
Sbjct: 56  KVLEGNEQFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLP--TAPPAAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPA--CK-HYEDRIAD-VICAGMPQGGRDTC 220
           + C   GWG     G D PD ++ +  P+L    CK  Y  +I + + C G  +GG+D+C
Sbjct: 114 TECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           Q D+GGP++C      G+  + GVVS G GCA  N PGVYT+V  +V W+
Sbjct: 174 QRDAGGPVVC-----NGQ--LQGVVSWGHGCAWKNRPGVYTKVYNYVDWI 216

>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A Multi- Centered Short Hydrogen Bonding Network At The Active Site Length = 245

Iteration: 1
 Score =  134 bits (337), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 133/250 (53%), Gaps = 26/250 (10%)
Query: 46  VVGGKKAELGAWPWLIALYR-----DGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEVY 99
           ++GG+   +   PW  A+YR        + CGG ++   WV++A HC +D  +K  + VY
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAP----LRYNRYVRPI 153
            G  R  S +  E    V  +++H  +    +   ND+ALL++ +      + +R ++ I
Sbjct: 61  LGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTI 120
Query: 154 CLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE---------DRI 204
           CLP +   P+  ++C   G+G   E   D  +  ++++ ++    H E         +  
Sbjct: 121 CLPSMYNDPQFGTSCEITGFGK--EASTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVT 178
Query: 205 ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
             ++CA  PQ   D+CQGDSGGPL+C +   QGR  + G+VS G GCA  ++PGVYTRVS
Sbjct: 179 TKMLCAADPQWKTDSCQGDSGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRVS 235
Query: 265 QFVPWLMSNS 274
            F+PW+ S++
Sbjct: 236 HFLPWIRSHT 245

>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes Length = 237

Iteration: 1
 Score =  134 bits (337), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 124/237 (52%), Gaps = 19/237 (8%)
Query: 39  PILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEV 98
           P+    ++VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V
Sbjct: 8   PVDDDDKIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQV 62
Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV 158
             G          EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  
Sbjct: 63  RLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP-- 120
Query: 159 TETPEPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRI-ADVICAGMP 213
           T      + C   GWG     G   PD ++ ++ PIL   +CK  Y  +I +++ CAG  
Sbjct: 121 TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYL 180
Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           +GG+D+CQGDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 181 EGGKDSCQGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 230

>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (Ala190 Upa) Length = 253

Iteration: 1
 Score =  134 bits (337), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 133/252 (52%), Gaps = 26/252 (10%)
Query: 46  VVGGKKAELGAWPWLIALYR-----DGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEVY 99
           ++GG+   +   PW  A+YR        + CGG ++   WV++A HC +D  +K  + VY
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAP----LRYNRYVRPI 153
            G  R  S +  E    V  +++H  +    +   ND+ALL++ +      + +R ++ I
Sbjct: 61  LGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTI 120
Query: 154 CLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE---------DRI 204
           CLP +   P+  ++C   G+G   E   D  +  ++++ ++    H E         +  
Sbjct: 121 CLPSMYNDPQFGTSCEITGFGK--EASTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVT 178
Query: 205 ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
             ++CA  PQ   D CQGDSGGPL+C +   QGR  + G+VS G GCA  ++PGVYTRVS
Sbjct: 179 TKMLCAADPQWKTDACQGDSGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRVS 235
Query: 265 QFVPWLMSNSER 276
            F+PW+ S+++ 
Sbjct: 236 HFLPWIRSHTKE 247

>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247 Length = 243

Iteration: 1
 Score =  134 bits (336), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 124/237 (52%), Gaps = 19/237 (8%)
Query: 39  PILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEV 98
           P+    ++VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V
Sbjct: 14  PVDDDDKIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQV 68
Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV 158
             G          EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  
Sbjct: 69  RLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP-- 126
Query: 159 TETPEPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRI-ADVICAGMP 213
           T      + C   GWG     G   PD ++ ++ PIL   +CK  Y  +I +++ CAG  
Sbjct: 127 TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYL 186
Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           +GG+D+CQGDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 187 EGGKDSCQGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 236

>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To Pmsf Length = 222

Iteration: 1
 Score =  134 bits (336), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 126/234 (53%), Gaps = 15/234 (6%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGMLR 104
           +VGGK A +G +P+ ++L   G   CG  +LD + V+TAAHCVDG    +  +V+ G   
Sbjct: 1   IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGT-- 58
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
               S +  V  V   V++  +    + ND+AL+ L  P+++N  V+PI L    E  E 
Sbjct: 59  -NYLSESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLES 117
Query: 165 YSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRIADVICAGMPQGGRDTCQG 222
            + CT  GWG+    G  P+ ++E+++ + P   C+  + R+ D     + + G   C G
Sbjct: 118 -NPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWRVIDSHICTLTKRGEGACHG 176
Query: 223 DSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER 276
           DSGGPL+    G+Q      G+VS G  CA   EP VYTRVS FV W+ +N ++
Sbjct: 177 DSGGPLV--ANGAQ-----IGIVSFGSPCAL-GEPDVYTRVSSFVSWINANLKK 222

>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor E2 Length = 241

Iteration: 1
 Score =  134 bits (336), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 87/241 (36%), Positives = 127/241 (52%), Gaps = 14/241 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFH-CGGVVLDESWVMTAAHC-VD--GF---EKHYFEV 98
           VVGG  A+ G WPW ++L+  G  H CG  ++  +W+++AAHC +D  GF   +   +  
Sbjct: 1   VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 99  YAGMLRRFSFS-PTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD 157
           + G+  +   S P  Q R + RI+ H  F       D+ALL+L  P  Y+  VRPI LPD
Sbjct: 61  FLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPD 120
Query: 158 VTETPEPYSTCTAVGWGAVFEHGPDPDHMR--EVQVPILPACKHY--EDRIADVICAGMP 213
            +            GWG     G     ++  E++V     C++   +     ++C G  
Sbjct: 121 ASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQITPRMMCVGFL 180
Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
            GG D+CQGDSGGPL      + GR + AGVVS G+GCA+ N+PGVYTR+  F  W+  N
Sbjct: 181 SGGVDSCQGDSGGPL--SSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN 238
Query: 274 S 274
           +
Sbjct: 239 T 239

>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between Pancreatic Secretory Inhibitor (Kazal Type) And Trypsinogen At 1.8 Angstroms Resolution. Structure Solution, Crystallographic Refinement And Preliminary Structural Interpretation Length = 229

Iteration: 1
 Score =  133 bits (335), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 19/231 (8%)
Query: 45  RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           ++VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G   
Sbjct: 6   KIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDN 60
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
                  EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  T     
Sbjct: 61  INVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP--TSCASA 118
Query: 165 YSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRI-ADVICAGMPQGGRDT 219
            + C   GWG     G   PD ++ ++ PIL   +CK  Y  +I +++ CAG  +GG+D+
Sbjct: 119 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDS 178
Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           CQGDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 179 CQGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 222

>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With The Elastase Inhibitor Gr143783 Length = 241

Iteration: 1
 Score =  133 bits (335), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 132/242 (54%), Gaps = 21/242 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDG---FFH-CGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           VVGG+ A   +WPW ++L  D    + H CGG ++D+SWV+TAAHC+       + V  G
Sbjct: 1   VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCIS--SSRTYRVVLG 58
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAPLRYNRYVRPICLPDV- 158
                +  P      VS++V+H  +   +++  ND+ALL+LA+P+     ++  CLP   
Sbjct: 59  RHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAG 118
Query: 159 TETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPIL--PACKH---YEDRI-ADVICAGM 212
           T  P  Y  C   GWG +  +G  PD +++ Q+ ++    C     +   +  ++ICAG 
Sbjct: 119 TILPNNY-VCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAG- 176
Query: 213 PQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWL 270
             G   +C GDSGGPL C   G+ G+W V G+VS G   GC   ++P V+TRVS ++ W+
Sbjct: 177 GDGIISSCNGDSGGPLNC--QGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWI 234
Query: 271 MS 272
            S
Sbjct: 235 NS 236

>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With The Protein Inhibitors Appi And Bpti Length = 223

Iteration: 1
 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F R  + ND+ L++L++P++ N  V  + LP  +      
Sbjct: 56  NVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALP--SSCAPAG 113
Query: 166 STCTAVGWGAVFEHG-PDPDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGRDTC 220
           + C   GWG     G  +PD ++ +  P+LP       Y  +I D ++C G  +GG+ +C
Sbjct: 114 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKGSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C          + G+VS G GCA P+ P VYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-------NGELQGIVSWGYGCALPDNPDVYTKVCNYVDWI 216

>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base Magnesium(Ii) Chelate Length = 228

Iteration: 1
 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 19/231 (8%)
Query: 45  RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           ++VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G   
Sbjct: 5   KIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDN 59
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
                  EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  T     
Sbjct: 60  INVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP--TSCASA 117
Query: 165 YSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRI-ADVICAGMPQGGRDT 219
            + C   GWG     G   PD ++ ++ PIL   +CK  Y  +I +++ CAG  +GG+D+
Sbjct: 118 GTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDS 177
Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           CQGDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 178 CQGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 221

>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex Length = 262

Iteration: 1
 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 135/252 (53%), Gaps = 26/252 (10%)
Query: 45  RVVGGKKAELGAWPWLIALYR-----DGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEV 98
           +++GG+   +   PW  A+YR        + CGG ++   WV++A HC +D  +K  + V
Sbjct: 15  KIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIV 74
Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAP----LRYNRYVRP 152
           Y G  R  S +  E    V  +++H  +    +   ND+ALL++ +      + +R ++ 
Sbjct: 75  YLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQT 134
Query: 153 ICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE---------DR 203
           I LP +   P+  ++C   G+G   E+  D  +  ++++ ++    H E         + 
Sbjct: 135 ISLPSMYNDPQFGTSCEITGFGK--ENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEV 192
Query: 204 IADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRV 263
              ++CA  PQ   D+CQGDSGGPL+C +   QGR  + G+VS G GCA  ++PGVYTRV
Sbjct: 193 TTKMLCAADPQWKTDSCQGDSGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRV 249
Query: 264 SQFVPWLMSNSE 275
           S F+PW+ S+++
Sbjct: 250 SHFLPWIRSHTK 261

>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin Length = 223

Iteration: 1
 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHC----XKSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRI-ADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL   +CK  Y  +I +++ CAG  +GG+D+C
Sbjct: 114 TQCLISGWGNTKSSGTSXPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGXLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216

>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And S195a Trypsin Length = 243

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 19/237 (8%)
Query: 39  PILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEV 98
           P+    ++VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V
Sbjct: 14  PVDDDDKIVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQV 68
Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV 158
             G          EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  
Sbjct: 69  RLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP-- 126
Query: 159 TETPEPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRI-ADVICAGMP 213
           T      + C   GWG     G   PD ++ ++ PIL   +CK  Y  +I +++ CAG  
Sbjct: 127 TSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYL 186
Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           +GG+D+CQGD+GGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 187 EGGKDSCQGDAGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 236

>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed By Crystal Structure Of Human Urokinase-Type Plasminogen Activator Complexed With A Cyclic Peptidyl Inhibitor, Upain-1 Length = 253

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 133/251 (52%), Gaps = 26/251 (10%)
Query: 46  VVGGKKAELGAWPWLIALYR-----DGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEVY 99
           ++GG+   +   PW  A+YR        + CGG ++   WV++A HC +D  +K  + VY
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAP----LRYNRYVRPI 153
            G  R  S +  E    V  +++H  +    +   ND+ALL++ +      + +R ++ I
Sbjct: 61  LGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTI 120
Query: 154 CLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE---------DRI 204
            LP +   P+  ++C   G+G   E   D  +  ++++ ++    H E         +  
Sbjct: 121 ALPSMYNDPQFGTSCEITGFGK--EQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVT 178
Query: 205 ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
             ++CA  PQ   D+CQGDSGGPL+C +   QGR  + G+VS G GCA  ++PGVYTRVS
Sbjct: 179 TKMLCAADPQWKTDSCQGDSGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRVS 235
Query: 265 QFVPWLMSNSE 275
            F+PW+ S+++
Sbjct: 236 HFLPWIRSHTK 246

>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi Length = 223

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRI-ADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL   +CK  Y  +I +++ CAG  +GG+D+C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSTSSCKSAYPGQITSNMFCAGYLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216

>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex Length = 253

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 134/251 (53%), Gaps = 26/251 (10%)
Query: 46  VVGGKKAELGAWPWLIALYR-----DGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEVY 99
           ++GG+   +   PW  A+YR        + CGG ++   WV++A HC +D  +K  + VY
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAP----LRYNRYVRPI 153
            G  R  S +  E    V  +++H  +    +   ND+ALL++ +      + +R ++ I
Sbjct: 61  LGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTI 120
Query: 154 CLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE---------DRI 204
            LP +   P+  ++C   G+G   E+  D  +  ++++ ++    H E         +  
Sbjct: 121 SLPSMYNDPQFGTSCEITGFGK--ENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVT 178
Query: 205 ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
             ++CA  PQ   D+CQGDSGGPL+C +   QGR  + G+VS G GCA  ++PGVYTRVS
Sbjct: 179 TKMLCAADPQWKTDSCQGDSGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRVS 235
Query: 265 QFVPWLMSNSE 275
            F+PW+ S+++
Sbjct: 236 HFLPWIRSHTK 246

>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk Type Protease Inhibitor And Its Interaction With Trypsin Length = 223

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRI-ADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL   +CK  Y  +I +++ CAG  +GG+D+C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216

>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin) Length = 224

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   E  + P+ ++L     F CGG ++ E WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCEENSLPYQVSLNSGSHF-CGGSLISEQWVVSAAHCY----KTRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ     +I+ H  + R  + ND+ L++L++P   N  V  I LP  T  P   
Sbjct: 56  KVLEGNEQFINAVKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLP--TAPPAAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPA--CK-HYEDRIAD-VICAGMPQGGRDTC 220
           + C   GWG     G D PD ++ +  P+L    CK  Y  +I + + C G  +GG+D+C
Sbjct: 114 TECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           Q DSGGP++C      G+  + GVVS G GCA  N PGVYT+V  +V W+
Sbjct: 174 QRDSGGPVVC-----NGQ--LQGVVSWGHGCAWKNRPGVYTKVYNYVDWI 216

>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And 5-Nitro-1h-Indole-2- Amidine Length = 246

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 134/251 (53%), Gaps = 26/251 (10%)
Query: 46  VVGGKKAELGAWPWLIALYR-----DGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEVY 99
           ++GG+   +   PW  A+YR        + CGG ++   WV++A HC +D  +K  + VY
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAP----LRYNRYVRPI 153
            G  R  S +  E    V  +++H  +    +   ND+ALL++ +      + +R ++ I
Sbjct: 61  LGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTI 120
Query: 154 CLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE---------DRI 204
            LP +   P+  ++C   G+G   E+  D  +  ++++ ++    H E         +  
Sbjct: 121 ALPSMYNDPQFGTSCEITGFGK--ENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVT 178
Query: 205 ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
             ++CA  PQ   D+CQGDSGGPL+C +   QGR  + G+VS G GCA  ++PGVYTRVS
Sbjct: 179 TKMLCAADPQWKTDSCQGDSGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRVS 235
Query: 265 QFVPWLMSNSE 275
            F+PW+ S+++
Sbjct: 236 HFLPWIRSHTK 246

>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin Inhibitor(Bpti) Length = 224

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 120/230 (52%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   E  + P+ ++L     F CGG ++ E WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCEENSLPYQVSLNSGSHF-CGGSLISEQWVVSAAHCY----KTRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  + R  + ND+ L++L++P   N  V  I LP  T  P   
Sbjct: 56  KVLEGNEQFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLP--TAPPAAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPA--CK-HYEDRIAD-VICAGMPQGGRDTC 220
           + C   GWG     G D PD ++ +  P+L    CK  Y  +I + + C G  +GG+D+C
Sbjct: 114 TECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           Q D+GGP++C      G+  + GVVS G GCA  N PGVYT+V  +V W+
Sbjct: 174 QRDAGGPVVC-----NGQ--LQGVVSWGHGCAWKNRPGVYTKVYNYVDWI 216

>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase Length = 246

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 133/251 (52%), Gaps = 26/251 (10%)
Query: 46  VVGGKKAELGAWPWLIALYR-----DGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEVY 99
           ++GG+   +   PW  A+YR        + CGG ++   WV++A HC +D  +K  + VY
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAP----LRYNRYVRPI 153
            G  R  S +  E    V  +++H  +    +   ND+ALL++ +      + +R ++ I
Sbjct: 61  LGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTI 120
Query: 154 CLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE---------DRI 204
            LP +   P+  ++C   G+G   E   D  +  ++++ ++    H E         +  
Sbjct: 121 ALPSMYNDPQFGTSCEITGFGK--EQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVT 178
Query: 205 ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
             ++CA  PQ   D+CQGDSGGPL+C +   QGR  + G+VS G GCA  ++PGVYTRVS
Sbjct: 179 TKMLCAADPQWKTDSCQGDSGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRVS 235
Query: 265 QFVPWLMSNSE 275
            F+PW+ S+++
Sbjct: 236 HFLPWIRSHTK 246

>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator Length = 247

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 134/251 (53%), Gaps = 26/251 (10%)
Query: 46  VVGGKKAELGAWPWLIALYR-----DGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEVY 99
           ++GG+   +   PW  A+YR        + CGG ++   WV++A HC +D  +K  + VY
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAP----LRYNRYVRPI 153
            G  R  S +  E    V  +++H  +    +   ND+ALL++ +      + +R ++ I
Sbjct: 61  LGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTI 120
Query: 154 CLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE---------DRI 204
            LP +   P+  ++C   G+G   E+  D  +  ++++ ++    H E         +  
Sbjct: 121 SLPSMYNDPQFGTSCEITGFGK--ENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVT 178
Query: 205 ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
             ++CA  PQ   D+CQGDSGGPL+C +   QGR  + G+VS G GCA  ++PGVYTRVS
Sbjct: 179 TKMLCAADPQWKTDSCQGDSGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRVS 235
Query: 265 QFVPWLMSNSE 275
            F+PW+ S+++
Sbjct: 236 HFLPWIRSHTK 246

>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With 2- Amino-5-Hydroxy-Benzimidazole Length = 245

Iteration: 1
 Score =  132 bits (331), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 133/250 (53%), Gaps = 26/250 (10%)
Query: 46  VVGGKKAELGAWPWLIALYR-----DGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEVY 99
           ++GG+   +   PW  A+YR        + CGG ++   WV++A HC +D  +K  + VY
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVY 60
Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAP----LRYNRYVRPI 153
            G  R  S +  E    V  +++H  +    +   ND+ALL++ +      + +R ++ I
Sbjct: 61  LGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTI 120
Query: 154 CLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE---------DRI 204
            LP +   P+  ++C   G+G   E+  D  +  ++++ ++    H E         +  
Sbjct: 121 ALPSMYNDPQFGTSCEITGFGK--ENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVT 178
Query: 205 ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
             ++CA  PQ   D+CQGDSGGPL+C +   QGR  + G+VS G GCA  ++PGVYTRVS
Sbjct: 179 TKMLCAADPQWKTDSCQGDSGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRVS 235
Query: 265 QFVPWLMSNS 274
            F+PW+ S++
Sbjct: 236 HFLPWIRSHT 245

>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant Length = 229

Iteration: 1
 Score =  131 bits (330), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  + +    ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNKRRKNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRI-ADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL   +CK  Y  +I +++ CAG  +GG+D+C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216

>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation Factor Viia Mutant In Complex With Soluble Tissue Factor Length = 254

Iteration: 1
 Score =  131 bits (330), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 125/240 (52%), Gaps = 20/240 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGGK    G  PW + L  +G   CGG +++  WV++AAHC D   K++  + A +L  
Sbjct: 1   IVGGKDCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKI-KNWRNLIA-VLGE 58
Query: 106 FSFSP---TEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
              S     EQ R V+++++ S +      +D+ALL+L  P+    +V P+CLP+ T + 
Sbjct: 59  HDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSE 118
Query: 163 EPYSTC---TAVGWGAVFEHGPDPDHMREVQVPILPA--CKHYEDRIAD-------VICA 210
              +        GWG + + G     ++ + VP L    C     ++ D       + CA
Sbjct: 119 RTLAFVRFSLVSGWGQLLDRGATALVLQVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCA 178
Query: 211 GMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           G   G +D+C+GDSGGP        +G WY+ G+VS G+GCA     GVYTRVSQ++ WL
Sbjct: 179 GYSDGSKDSCKGDSGGP---HATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWL 235

>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH Inhibitors Length = 253

Iteration: 1
 Score =  131 bits (330), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 133/251 (52%), Gaps = 26/251 (10%)
Query: 46  VVGGKKAELGAWPWLIALYR-----DGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEVY 99
           ++GG+   +   PW  A+YR        + CGG ++   WV++A HC +D  +K  + VY
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAP----LRYNRYVRPI 153
            G  R  S +  E    V  +++H  +    +   ND+ALL++ +      + +R ++ I
Sbjct: 61  LGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTI 120
Query: 154 CLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE---------DRI 204
            LP +   P+  ++C   G+G   E   D  +  ++++ ++    H E         +  
Sbjct: 121 ALPSMYNDPQFGTSCEITGFGK--EQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVT 178
Query: 205 ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
             ++CA  PQ   D+CQGD+GGPL+C +   QGR  + G+VS G GCA  ++PGVYTRVS
Sbjct: 179 TKMLCAADPQWKTDSCQGDAGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRVS 235
Query: 265 QFVPWLMSNSE 275
            F+PW+ S+++
Sbjct: 236 HFLPWIRSHTK 246

>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A Engineered Mutant Trypsin Inhibitor Length = 223

Iteration: 1
 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 121/230 (52%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +    + ND+ L++L +    N  V  + LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASVSLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRI-ADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL   +CK  Y  +I +++ CAG  +GG+D+C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVCA-----GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216

>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT REFINEMENT Length = 223

Iteration: 1
 Score =  131 bits (329), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 19/229 (8%)
Query: 47  VGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRF 106
           VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G     
Sbjct: 2   VGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNIN 56
Query: 107 SFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYS 166
                EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  T      +
Sbjct: 57  VVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP--TSCASAGT 114
Query: 167 TCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRI-ADVICAGMPQGGRDTCQ 221
            C   GWG     G   PD ++ ++ PIL   +CK  Y  +I +++ CAG  +GG+D+CQ
Sbjct: 115 QCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQ 174
Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           GDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 175 GDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216

>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation Factor Viia With Human Recombinant Soluble Tissue Factor Length = 254

Iteration: 1
 Score =  131 bits (329), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 124/240 (51%), Gaps = 20/240 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGGK    G  PW + L  +G   CGG +++  WV++AAHC D   K++  + A +L  
Sbjct: 1   IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKI-KNWRNLIA-VLGE 58
Query: 106 FSFSP---TEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
              S     EQ R V+++++ S +      +D+ALL+L  P+    +V P+CLP+ T + 
Sbjct: 59  HDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSE 118
Query: 163 EPYSTC---TAVGWGAVFEHGPDPDHMREVQVPILPA--CKHYEDRIAD-------VICA 210
              +        GWG + + G     +  + VP L    C     ++ D       + CA
Sbjct: 119 RTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCA 178
Query: 211 GMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           G   G +D+C+GDSGGP        +G WY+ G+VS G+GCA     GVYTRVSQ++ WL
Sbjct: 179 GYSDGSKDSCKGDSGGP---HATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWL 235

>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Mutant Length = 223

Iteration: 1
 Score =  131 bits (329), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 120/230 (52%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +      ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRI-ADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL   +CK  Y  +I +++ CAG  +GG+D+C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216

>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A Cold-Adapted Fish Species. Length = 223

Iteration: 1
 Score =  130 bits (328), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 125/232 (53%), Gaps = 19/232 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG +    +  +  +L + G+  CGG ++  +WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYECRKNSASYQASL-QSGYHFCGGSLISSTWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                TEQ     +++MH  +    + ND+ L++L+ P   N YV  + LP  +      
Sbjct: 56  AVNEGTEQFIDSVKVIMHPSYNSRNLDNDIMLIKLSKPASLNSYVSTVALP--SSCASSG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPA--CKH-YEDRI-ADVICAGMPQGGRDTC 220
           + C   GWG +     + PD +R + +PIL +  C   Y  +I +++ CAG  +GG+D+C
Sbjct: 114 TRCLVSGWGNLSGSSSNYPDTLRCLDLPILSSSSCNSAYPGQITSNMFCAGFMEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           QGDSGGP++C      G+  + GVVS G GCA+ N+PGVYT+V  +  W+ S
Sbjct: 174 QGDSGGPVVC-----NGQ--LQGVVSWGYGCAQRNKPGVYTKVCNYRSWISS 218

>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution Length = 224

Iteration: 1
 Score =  130 bits (328), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 121/231 (52%), Gaps = 17/231 (7%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG  A  G +P+++++ R+G   CGG +L+ + V+TAAHCV G+ +  F++ AG L R
Sbjct: 1   IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSR 60
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
            S   T     +S + +H  +  +   NDLA+L+L+  +     +    L      P   
Sbjct: 61  TSGGITSS---LSSVRVHPSY--SGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAG 115
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKHYEDRIA---DVICAGMPQGGRDT 219
           S+ T  GWGA  E G   P ++ +V VPI+    C+      A    + CAG+  GG+D+
Sbjct: 116 SSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDS 175
Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           CQGDSGGP++           + G VS G GCARPN  GVY  V     ++
Sbjct: 176 CQGDSGGPIV------DSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFI 220

>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21 Length = 249

Iteration: 1
 Score =  130 bits (328), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 121/236 (51%), Gaps = 17/236 (7%)
Query: 45  RVVGGKKAELGAWPW---LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           R+VGG++ + G  PW   LI    +GF  CGG +L E +++TAAHC+  ++   F+V  G
Sbjct: 15  RIVGGQECKDGECPWQALLINEENEGF--CGGTILSEFYILTAAHCL--YQAKRFKVRVG 70
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD---V 158
                     E V  V  ++ H+ F +     D+A+L+L  P+ +   V P CLP+    
Sbjct: 71  DRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWA 130
Query: 159 TETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRI--ADVICAGMPQ 214
             T     T    G+G   E G     ++ ++VP +   +CK     I   ++ CAG   
Sbjct: 131 ESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDT 190
Query: 215 GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
              D CQGDSGGP    V   +  ++V G+VS GEGCAR  + G+YT+V+ F+ W+
Sbjct: 191 KQEDACQGDSGGP---HVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 243

>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase) Length = 223

Iteration: 1
 Score =  130 bits (327), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 120/230 (52%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRI-ADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL   +CK  Y  +I +++ CAG  +GG+D+C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGD GGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDXGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216

>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO Determine The Conformational Dynamics Of Trypsin Length = 223

Iteration: 1
 Score =  130 bits (327), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 19/229 (8%)
Query: 47  VGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRF 106
           VGG        P+ ++L   G+  CGG ++D  WV++AAHC     K   +V  G     
Sbjct: 2   VGGYTCGANTVPYQVSL-NSGYHFCGGSLIDSQWVVSAAHCY----KSGIQVRLGEDNIN 56
Query: 107 SFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYS 166
                EQ    S+ ++H  +    + ND+ L++L +    +  V  I LP  T      +
Sbjct: 57  VVEGNEQFISASKSIVHPSYDSNTLNNDIMLIKLKSAASLDSRVASISLP--TSCASAGT 114
Query: 167 TCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRI-ADVICAGMPQGGRDTCQ 221
            C   GWG     G   PD ++ ++ PIL   +CK  Y  +I +++ CAG  +GG+D+CQ
Sbjct: 115 QCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQ 174
Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           GDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 175 GDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216

>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To Atomic Resolution Length = 224

Iteration: 1
 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 120/230 (52%), Gaps = 17/230 (7%)
Query: 47  VGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRF 106
           VGG  A  G +P+++++ R+G   CGG +L+ + V+TAAHCV G+ +  F++ AG L R 
Sbjct: 2   VGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRT 61
Query: 107 SFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYS 166
           S   T     +S + +H  +  +   NDLA+L+L+  +     +    L      P   S
Sbjct: 62  SGGITSS---LSSVRVHPSY--SGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGS 116
Query: 167 TCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKHYEDRIA---DVICAGMPQGGRDTC 220
           + T  GWGA  E G   P ++ +V VPI+    C+      A    + CAG+  GG+D+C
Sbjct: 117 SATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSC 176
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++           + G VS G GCARPN  GVY  V     ++
Sbjct: 177 QGDSGGPIV------DSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFI 220

>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssfi.Glu)bt.D1 Length = 223

Iteration: 1
 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDR----IADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL              +++ CAG  +GG+D+C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS GEGCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVCS-----GK--LQGIVSWGEGCAQKNKPGVYTKVCNYVSWI 216

>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In Complex With Trypsin Length = 223

Iteration: 1
 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 120/230 (52%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +    + ND+ L++L +       V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLXSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRI-ADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL   +CK  Y  +I +++ CAG  +GG+D+C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216

>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution Length = 224

Iteration: 1
 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 120/231 (51%), Gaps = 17/231 (7%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG  A  G +P+++++ R+G   CGG +L+ + V+TAAHCV G+ +  F++ AG L R
Sbjct: 1   IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSR 60
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
            S   T     +S + +H  +  +   NDLA+L+L+  +     +    L      P   
Sbjct: 61  TSGGITSS---LSSVRVHPSY--SGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAG 115
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKHYEDRIA---DVICAGMPQGGRDT 219
           S+ T  GWGA  E G   P ++ +V VPI+    C+      A    + CAG+  GG+D+
Sbjct: 116 SSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDS 175
Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           CQGD GGP++           + G VS G GCARPN  GVY  V     ++
Sbjct: 176 CQGDXGGPIV------DSSNTLIGAVSWGNGCARPNYSGVYASVGALRSFI 220

>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of The Complex Formed Between Porcine Beta-trypsin And Mcti-a, A Trypsin Inhibitor Of Squash Family Length = 223

Iteration: 1
 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG      + P+ ++L     F CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCAANSIPYQVSLNSGSHF-CGGSLINSQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F    + ND+ L++L++P   N  V  + LP         
Sbjct: 56  DVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPR--SCAAAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRIA-DVICAGMPQGGRDTC 220
           + C   GWG     G   P  ++ ++ P+L   +CK  Y  +I  ++IC G  QGG+D+C
Sbjct: 114 TECLISGWGNTKSSGSSYPSLLQCLKAPVLSNSSCKSSYPGQITGNMICVGFLQGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C          + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-------NGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWI 216

>pdb|2BOK|A Chain A, Factor Xa- Cation Length = 241

Iteration: 1
 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 120/235 (51%), Gaps = 17/235 (7%)
Query: 46  VVGGKKAELGAWPW---LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++ + G  PW   LI    +GF  CGG +L E +++TAAHC+  ++   F+V  G 
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGF--CGGTILSEFYILTAAHCL--YQAKRFKVRVGD 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD---VT 159
                    E V  V  ++ H+ F +     D+A+L+L  P+ +   V P CLP+     
Sbjct: 57  RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAE 116
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRI--ADVICAGMPQG 215
            T     T    G+G   E G     ++ ++VP +   +CK     I   ++ CAG    
Sbjct: 117 STLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTK 176
Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             D CQGDSGGP    V   +  ++V G+VS GEGCAR  + G+YT+V+ F+ W+
Sbjct: 177 QEDACQGDSGGP---HVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex Length = 254

Iteration: 1
 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 121/235 (51%), Gaps = 17/235 (7%)
Query: 46  VVGGKKAELGAWPW---LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++ + G  PW   LI    +GF  CGG +L E +++TAAHC+  ++   F+V  G 
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGF--CGGTILSEFYILTAAHCL--YQAKRFKVRVGD 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD---VT 159
               +    E V  V  ++ H+ F +     D+A+L+L  P+ +   V P CLP+     
Sbjct: 57  RNTAAEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAE 116
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRI--ADVICAGMPQG 215
            T     T    G+G   E G     ++ ++VP +   +CK     I   ++ CAG    
Sbjct: 117 STLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTK 176
Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             D CQGDSGGP    V   +  ++V G+VS GEGCAR  + G+YT+V+ F+ W+
Sbjct: 177 QEDACQGDSGGP---HVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex Length = 234

Iteration: 1
 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 120/235 (51%), Gaps = 17/235 (7%)
Query: 46  VVGGKKAELGAWPW---LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++ + G  PW   LI    +GF  CGG +L E +++TAAHC+  ++   F+V  G 
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGF--CGGTILSEFYILTAAHCL--YQAKRFKVRVGD 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD---VT 159
                    E V  V  ++ H+ F +     D+A+L+L  P+ +   V P CLP+     
Sbjct: 57  RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAE 116
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRI--ADVICAGMPQG 215
            T     T    G+G   E G     ++ ++VP +   +CK     I   ++ CAG    
Sbjct: 117 STLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTK 176
Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             D CQGDSGGP    V   +  ++V G+VS GEGCAR  + G+YT+V+ F+ W+
Sbjct: 177 QEDACQGDSGGP---HVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai) Bt.D1 Length = 223

Iteration: 1
 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 115/230 (50%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDRIA----DVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL          A    ++ CAG  +GG+D+C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSAIITSNMFCAGYLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216

>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms Resolution Length = 241

Iteration: 1
 Score =  128 bits (321), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 120/235 (51%), Gaps = 17/235 (7%)
Query: 46  VVGGKKAELGAWPW---LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++ + G  PW   LI    +GF  CGG +L E +++TAAHC+  ++   F+V  G 
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGF--CGGTILSEFYILTAAHCL--YQAKRFKVRVGD 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD---VT 159
                    E V  V  ++ H+ F +     D+A+L+L  P+ +   V P CLP+     
Sbjct: 57  RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAE 116
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRI--ADVICAGMPQG 215
            T     T    G+G   E G     ++ ++VP +   +CK     I   ++ CAG    
Sbjct: 117 STLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTK 176
Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             D CQGDSGGP    V   +  ++V G+VS GEGCAR  + G+YT+V+ F+ W+
Sbjct: 177 QEDACQGDSGGP---HVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri) Bt.C1 Length = 223

Iteration: 1
 Score =  128 bits (321), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYED--RI--ADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL          RI  +++ CAG  +GG+D+C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSRIITSNMFCAGYLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216

>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031) Complexed With Factor Xa Length = 234

Iteration: 1
 Score =  128 bits (321), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 120/235 (51%), Gaps = 17/235 (7%)
Query: 46  VVGGKKAELGAWPW---LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++ + G  PW   LI    +GF  CGG +L E +++TAAHC+  ++   F+V  G 
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGF--CGGTILSEFYILTAAHCL--YQAKRFKVRVGD 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD---VT 159
                    E V  V  ++ H+ F +     D+A+L+L  P+ +   V P CLP+     
Sbjct: 57  RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAE 116
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRI--ADVICAGMPQG 215
            T     T    G+G   E G     ++ ++VP +   +CK     I   ++ CAG    
Sbjct: 117 STLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTK 176
Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             D CQGDSGGP    V   +  ++V G+VS GEGCAR  + G+YT+V+ F+ W+
Sbjct: 177 QEDACQGDSGGP---HVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor Fx-2212a,(2s)-(3'- Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid Length = 235

Iteration: 1
 Score =  128 bits (321), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 120/235 (51%), Gaps = 17/235 (7%)
Query: 46  VVGGKKAELGAWPW---LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++ + G  PW   LI    +GF  CGG +L E +++TAAHC+  ++   F+V  G 
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGF--CGGTILSEFYILTAAHCL--YQAKRFKVRVGD 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD---VT 159
                    E V  V  ++ H+ F +     D+A+L+L  P+ +   V P CLP+     
Sbjct: 57  RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAE 116
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRI--ADVICAGMPQG 215
            T     T    G+G   E G     ++ ++VP +   +CK     I   ++ CAG    
Sbjct: 117 STLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTK 176
Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             D CQGDSGGP    V   +  ++V G+VS GEGCAR  + G+YT+V+ F+ W+
Sbjct: 177 QEDACQGDSGGP---HVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|1MQ5|A Chain A, Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-chlorophenyl) Amino]carbonyl]phenyl]-4-[(4-methyl-1- piperazinyl)methyl]-2- Thiophenecarboxamide Complexed With Human Factor Xa Length = 233

Iteration: 1
 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 120/235 (51%), Gaps = 17/235 (7%)
Query: 46  VVGGKKAELGAWPW---LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++ + G  PW   LI    +GF  CGG +L E +++TAAHC+  ++   F+V  G 
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGF--CGGTILSEFYILTAAHCL--YQAKRFKVRVGD 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD---VT 159
                    E V  V  ++ H+ F +     D+A+L+L  P+ +   V P CLP+     
Sbjct: 57  RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAE 116
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRI--ADVICAGMPQG 215
            T     T    G+G   E G     ++ ++VP +   +CK     I   ++ CAG    
Sbjct: 117 STLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTK 176
Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             D CQGDSGGP    V   +  ++V G+VS GEGCAR  + G+YT+V+ F+ W+
Sbjct: 177 QEDACQGDSGGP---HVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 254

Iteration: 1
 Score =  127 bits (320), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 120/235 (51%), Gaps = 17/235 (7%)
Query: 46  VVGGKKAELGAWPW---LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++ + G  PW   LI    +GF  CGG +L E +++TAAHC+  ++   F+V  G 
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGF--CGGTILSEFYILTAAHCL--YQAKRFKVRVGD 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD---VT 159
                    E V  V  ++ H+ F +     D+A+L+L  P+ +   V P CLP+     
Sbjct: 57  RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAE 116
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRI--ADVICAGMPQG 215
            T     T    G+G   E G     ++ ++VP +   +CK     I   ++ CAG    
Sbjct: 117 STLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTK 176
Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             D CQGDSGGP    V   +  ++V G+VS GEGCAR  + G+YT+V+ F+ W+
Sbjct: 177 QEDACQGDSGGP---HVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2- oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 238

Iteration: 1
 Score =  127 bits (320), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 120/235 (51%), Gaps = 17/235 (7%)
Query: 46  VVGGKKAELGAWPW---LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++ + G  PW   LI    +GF  CGG +L E +++TAAHC+  ++   F+V  G 
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGF--CGGTILSEFYILTAAHCL--YQAKRFKVRVGD 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD---VT 159
                    E V  V  ++ H+ F +     D+A+L+L  P+ +   V P CLP+     
Sbjct: 57  RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAE 116
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRI--ADVICAGMPQG 215
            T     T    G+G   E G     ++ ++VP +   +CK     I   ++ CAG    
Sbjct: 117 STLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTK 176
Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             D CQGDSGGP    V   +  ++V G+VS GEGCAR  + G+YT+V+ F+ W+
Sbjct: 177 QEDACQGDSGGP---HVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Ssyi)bt.B4 Length = 223

Iteration: 1
 Score =  127 bits (320), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDR----IADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL              +++ CAG  +GG+D+C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSYIITSNMFCAGYLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216

>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type Plasminogen Activator Length = 255

Iteration: 1
 Score =  127 bits (320), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 120/235 (51%), Gaps = 17/235 (7%)
Query: 46  VVGGKKAELGAWPW---LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++ + G  PW   LI    +GF  CGG +L E +++TAAHC+  ++   F+V  G 
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGF--CGGTILSEFYILTAAHCL--YQAKRFKVRVGD 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD---VT 159
                    E V  V  ++ H+ F +     D+A+L+L  P+ +   V P CLP+     
Sbjct: 57  RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAE 116
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRI--ADVICAGMPQG 215
            T     T    G+G   E G     ++ ++VP +   +CK     I   ++ CAG    
Sbjct: 117 STLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTK 176
Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             D CQGDSGGP    V   +  ++V G+VS GEGCAR  + G+YT+V+ F+ W+
Sbjct: 177 QEDACQGDSGGP---HVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin Length = 231

Iteration: 1
 Score =  127 bits (320), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 119/232 (51%), Gaps = 19/232 (8%)
Query: 45  RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           ++VGG      + P+ ++L     F CGG +++  WV++AAHC     K   +V  G   
Sbjct: 8   KIVGGYTCAANSIPYQVSLNSGSHF-CGGSLINSQWVVSAAHCY----KSRIQVRLGEHN 62
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
                  EQ    ++I+ H  F    + ND+ L++L++P   N  V  + LP        
Sbjct: 63  IDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLP--RSCAAA 120
Query: 165 YSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRIA-DVICAGMPQGGRDT 219
            + C   GWG     G   P  ++ ++ P+L   +CK  Y  +I  ++IC G  +GG+D+
Sbjct: 121 GTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDS 180
Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLM 271
           CQGDSGGP++C          + G+VS G GCA+ N+PGVYT+V  +V W+ 
Sbjct: 181 CQGDSGGPVVC-------NGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQ 225

>pdb|2XRC|A Chain A, Human Complement Factor I Length = 565

Iteration: 1
 Score =  127 bits (319), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 122/244 (50%), Gaps = 31/244 (12%)
Query: 45  RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM-- 102
           R+VGGK+A+LG  PW +A+       CGG+ +   W++TAAHC+   + H ++++  +  
Sbjct: 321 RIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRASKTHRYQIWTTVVD 380
Query: 103 -----LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQL-----AAPLRYNRYVRP 152
                L+R        +  V RI+ H  +      ND+AL+++            R + P
Sbjct: 381 WIHPDLKRIV------IEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSI-P 433
Query: 153 ICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQ---VPILPAC-KHYEDRI--AD 206
            C+P      +P  TC   GWG       D + +  +Q   V ++  C K Y +R    +
Sbjct: 434 ACVPWSPYLFQPNDTCIVSGWG----REKDNERVFSLQWGEVKLISNCSKFYGNRFYEKE 489
Query: 207 VICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQF 266
           + CAG   G  D C+GDSGGPL+C    +    YV GVVS GE C +P  PGVYT+V+ +
Sbjct: 490 MECAGTYDGSIDACKGDSGGPLVC--MDANNVTYVWGVVSWGENCGKPEFPGVYTKVANY 547
Query: 267 VPWL 270
             W+
Sbjct: 548 FDWI 551

>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Variant X(Triple.Glu)bt.D2 Length = 223

Iteration: 1
 Score =  127 bits (318), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 114/230 (49%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +      ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDR----IADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL              +++ CAG  +GG+D C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDAC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS GEGCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVCS-----GK--LQGIVSWGEGCAQKNKPGVYTKVCNYVSWI 216

>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Sswi)bt.B4 Length = 223

Iteration: 1
 Score =  127 bits (318), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDR----IADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL              +++ CAG  +GG+D+C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSWIITSNMFCAGYLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216

>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor Xa-Pentasaccharide Complex Length = 241

Iteration: 1
 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 120/235 (51%), Gaps = 17/235 (7%)
Query: 46  VVGGKKAELGAWPW---LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++ + G  PW   LI    +GF  CGG +L E +++TAAHC+  ++   F+V  G 
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGF--CGGTILSEFYILTAAHCL--YQAKRFKVRVGD 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD---VT 159
                    E V  V  ++ H+ F +     D+A+L+L  P+ +   V P CLP+     
Sbjct: 57  RNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAE 116
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRI--ADVICAGMPQG 215
            T     T    G+G   E G     ++ ++VP +   +CK     I   ++ CAG    
Sbjct: 117 STLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTK 176
Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             D CQGD+GGP    V   +  ++V G+VS GEGCAR  + G+YT+V+ F+ W+
Sbjct: 177 QEDACQGDAGGP---HVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228

>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor Pathway Inhibitor With Porcine Trypsin Length = 223

Iteration: 1
 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG      + P+ ++L     F CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCAANSIPYQVSLNSGSHF-CGGSLINSQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F    + ND+ L++L++P   N  V  + LP         
Sbjct: 56  DVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPR--SCAAAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRIA-DVICAGMPQGGRDTC 220
           + C   GWG     G   P  ++ ++ P+L   +CK  Y  +I  ++IC G  +GG+D+C
Sbjct: 114 TECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C          + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-------NGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWI 216

>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of Thrombin Length = 287

Iteration: 1
 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 133/278 (47%), Gaps = 32/278 (11%)
Query: 25  PLGARNMATDMAGNPILGS---GRVVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDES 79
           PL  +    D     +L S   GR+V G  AE+G  PW + L+R       CG  ++ + 
Sbjct: 7   PLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDR 66
Query: 80  WVMTAAHCV------DGFEKHYFEVYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEM 131
           WV+TAAHC+        F ++   V  G   R  +    E++  + +I +H  +  R  +
Sbjct: 67  WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENL 126
Query: 132 TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTC----TAVGWGAVFEHGP------ 181
             D+AL++L  P+ ++ Y+ P+CLPD  ET              GWG + E         
Sbjct: 127 DRDIALMKLKKPVAFSDYIHPVCLPD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKG 185
Query: 182 DPDHMREVQVPIL--PACKHYED-RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPG 234
            P  ++ V +PI+  P CK     RI D + CAG  P  G+  D C+GDSGGP +   P 
Sbjct: 186 QPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPF 245
Query: 235 SQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           +  RWY  G+VS GEGC R  + G YT V +   W+  
Sbjct: 246 NN-RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 282

>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 114/230 (49%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +      ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDR----IADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL              +++ CAG  +GG+D C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDAC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS GEGCA+ N+PG+YT+V  +V W+
Sbjct: 174 QGDSGGPVVCS-----GK--LQGIVSWGEGCAQKNKPGIYTKVCNYVSWI 216

>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary Complex With Porcine Trypsin Length = 223

Iteration: 1
 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG      + P+ ++L     F CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCAANSVPYQVSLNSGSHF-CGGSLINSQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F    + ND+ L++L++P   N  V  + LP         
Sbjct: 56  DVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPR--SCAAAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRIA-DVICAGMPQGGRDTC 220
           + C   GWG     G   P  ++ ++ P+L   +CK  Y  +I  ++IC G  +GG+D+C
Sbjct: 114 TECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSAYPGQITGNMICVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C          + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-------NGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWI 216

>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And Ppack- Thrombin: Changes Accompanying Activation And Exosite Binding To Thrombin Length = 295

Iteration: 1
 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 133/278 (47%), Gaps = 32/278 (11%)
Query: 25  PLGARNMATDMAGNPILGS---GRVVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDES 79
           PL  +    D     +L S   GR+V G  AE+G  PW + L+R       CG  ++ + 
Sbjct: 13  PLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDR 72
Query: 80  WVMTAAHCV------DGFEKHYFEVYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEM 131
           WV+TAAHC+        F ++   V  G   R  +    E++  + +I +H  +  R  +
Sbjct: 73  WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENL 132
Query: 132 TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTC----TAVGWGAVFEHGP------ 181
             D+AL++L  P+ ++ Y+ P+CLPD  ET              GWG + E         
Sbjct: 133 DRDIALMKLKKPVAFSDYIHPVCLPD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKG 191
Query: 182 DPDHMREVQVPIL--PACKHYED-RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPG 234
            P  ++ V +PI+  P CK     RI D + CAG  P  G+  D C+GDSGGP +   P 
Sbjct: 192 QPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPF 251
Query: 235 SQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           +  RWY  G+VS GEGC R  + G YT V +   W+  
Sbjct: 252 NN-RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 288

>pdb|1KIG|H Chain H, Bovine Factor Xa Length = 241

Iteration: 1
 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/235 (34%), Positives = 115/235 (48%), Gaps = 17/235 (7%)
Query: 46  VVGGKKAELGAWPW---LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG+    G  PW   L+    +GF  CGG +L+E +V+TAAHC+   +   F V  G 
Sbjct: 1   IVGGRDCAEGECPWQALLVNEENEGF--CGGTILNEFYVLTAAHCLH--QAKRFTVRVGD 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD---VT 159
                    E    V   V HS F +     D+A+L+L  P+R+ R V P CLP+     
Sbjct: 57  RNTEQEEGNEMAHEVEMTVKHSRFVKETYDFDIAVLRLKTPIRFRRNVAPACLPEKDWAE 116
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPIL--PACKHYEDRIA--DVICAGMPQG 215
            T     T    G+G   E G     ++ ++VP +    CK         ++ CAG    
Sbjct: 117 ATLMTQKTGIVSGFGRTHEKGRLSSTLKMLEVPYVDRSTCKLSSSFTITPNMFCAGYDTQ 176
Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             D CQGDSGGP    V   +  ++V G+VS GEGCAR  + GVYT+VS F+ W+
Sbjct: 177 PEDACQGDSGGP---HVTRFKDTYFVTGIVSWGEGCARKGKFGVYTKVSNFLKWI 228

>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex Length = 291

Iteration: 1
 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 133/278 (47%), Gaps = 32/278 (11%)
Query: 25  PLGARNMATDMAGNPILGS---GRVVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDES 79
           PL  +    D     +L S   GR+V G  AE+G  PW + L+R       CG  ++ + 
Sbjct: 9   PLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDR 68
Query: 80  WVMTAAHCV------DGFEKHYFEVYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEM 131
           WV+TAAHC+        F ++   V  G   R  +    E++  + +I +H  +  R  +
Sbjct: 69  WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENL 128
Query: 132 TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTC----TAVGWGAVFEHGP------ 181
             D+AL++L  P+ ++ Y+ P+CLPD  ET              GWG + E         
Sbjct: 129 DRDIALMKLKKPVAFSDYIHPVCLPD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKG 187
Query: 182 DPDHMREVQVPIL--PACKHYED-RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPG 234
            P  ++ V +PI+  P CK     RI D + CAG  P  G+  D C+GDSGGP +   P 
Sbjct: 188 QPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPF 247
Query: 235 SQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           +  RWY  G+VS GEGC R  + G YT V +   W+  
Sbjct: 248 NN-RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 284

>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor Length = 289

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 133/278 (47%), Gaps = 32/278 (11%)
Query: 25  PLGARNMATDMAGNPILGS---GRVVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDES 79
           PL  +    D     +L S   GR+V G  AE+G  PW + L+R       CG  ++ + 
Sbjct: 7   PLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDR 66
Query: 80  WVMTAAHCV------DGFEKHYFEVYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEM 131
           WV+TAAHC+        F ++   V  G   R  +    E++  + +I +H  +  R  +
Sbjct: 67  WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENL 126
Query: 132 TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTC----TAVGWGAVFEHGP------ 181
             D+AL++L  P+ ++ Y+ P+CLPD  ET              GWG + E         
Sbjct: 127 DRDIALMKLKKPVAFSDYIHPVCLPD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKG 185
Query: 182 DPDHMREVQVPIL--PACKHYED-RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPG 234
            P  ++ V +PI+  P CK     RI D + CAG  P  G+  D C+GDSGGP +   P 
Sbjct: 186 QPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPF 245
Query: 235 SQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           +  RWY  G+VS GEGC R  + G YT V +   W+  
Sbjct: 246 NN-RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 282

>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 288

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 133/278 (47%), Gaps = 32/278 (11%)
Query: 25  PLGARNMATDMAGNPILGS---GRVVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDES 79
           PL  +    D     +L S   GR+V G  AE+G  PW + L+R       CG  ++ + 
Sbjct: 7   PLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDR 66
Query: 80  WVMTAAHCV------DGFEKHYFEVYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEM 131
           WV+TAAHC+        F ++   V  G   R  +    E++  + +I +H  +  R  +
Sbjct: 67  WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENL 126
Query: 132 TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTC----TAVGWGAVFEHGP------ 181
             D+AL++L  P+ ++ Y+ P+CLPD  ET              GWG + E         
Sbjct: 127 DRDIALMKLKKPVAFSDYIHPVCLPD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKG 185
Query: 182 DPDHMREVQVPIL--PACKHYED-RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPG 234
            P  ++ V +PI+  P CK     RI D + CAG  P  G+  D C+GDSGGP +   P 
Sbjct: 186 QPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPF 245
Query: 235 SQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           +  RWY  G+VS GEGC R  + G YT V +   W+  
Sbjct: 246 NN-RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 282

>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electrophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 287

Iteration: 1
 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 133/278 (47%), Gaps = 32/278 (11%)
Query: 25  PLGARNMATDMAGNPILGS---GRVVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDES 79
           PL  +    D     +L S   GR+V G  AE+G  PW + L+R       CG  ++ + 
Sbjct: 7   PLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDR 66
Query: 80  WVMTAAHCV------DGFEKHYFEVYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEM 131
           WV+TAAHC+        F ++   V  G   R  +    E++  + +I +H  +  R  +
Sbjct: 67  WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENL 126
Query: 132 TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTC----TAVGWGAVFEHGP------ 181
             D+AL++L  P+ ++ Y+ P+CLPD  ET              GWG + E         
Sbjct: 127 DRDIALMKLKKPVAFSDYIHPVCLPD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKG 185
Query: 182 DPDHMREVQVPIL--PACKHYED-RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPG 234
            P  ++ V +PI+  P CK     RI D + CAG  P  G+  D C+GDSGGP +   P 
Sbjct: 186 QPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPF 245
Query: 235 SQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           +  RWY  G+VS GEGC R  + G YT V +   W+  
Sbjct: 246 NN-RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 282

>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor At 1.8a Length = 287

Iteration: 1
 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 133/278 (47%), Gaps = 32/278 (11%)
Query: 25  PLGARNMATDMAGNPILGS---GRVVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDES 79
           PL  +    D     +L S   GR+V G  AE+G  PW + L+R       CG  ++ + 
Sbjct: 6   PLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDR 65
Query: 80  WVMTAAHCV------DGFEKHYFEVYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEM 131
           WV+TAAHC+        F ++   V  G   R  +    E++  + +I +H  +  R  +
Sbjct: 66  WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENL 125
Query: 132 TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTC----TAVGWGAVFEHGP------ 181
             D+AL++L  P+ ++ Y+ P+CLPD  ET              GWG + E         
Sbjct: 126 DRDIALMKLKKPVAFSDYIHPVCLPD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKG 184
Query: 182 DPDHMREVQVPIL--PACKHYED-RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPG 234
            P  ++ V +PI+  P CK     RI D + CAG  P  G+  D C+GDSGGP +   P 
Sbjct: 185 QPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPF 244
Query: 235 SQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           +  RWY  G+VS GEGC R  + G YT V +   W+  
Sbjct: 245 NN-RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 281

>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin Inhibitors And Their Crystal Structures Length = 289

Iteration: 1
 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 133/278 (47%), Gaps = 32/278 (11%)
Query: 25  PLGARNMATDMAGNPILGS---GRVVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDES 79
           PL  +    D     +L S   GR+V G  AE+G  PW + L+R       CG  ++ + 
Sbjct: 9   PLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDR 68
Query: 80  WVMTAAHCV------DGFEKHYFEVYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEM 131
           WV+TAAHC+        F ++   V  G   R  +    E++  + +I +H  +  R  +
Sbjct: 69  WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENL 128
Query: 132 TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTC----TAVGWGAVFEHGP------ 181
             D+AL++L  P+ ++ Y+ P+CLPD  ET              GWG + E         
Sbjct: 129 DRDIALMKLKKPVAFSDYIHPVCLPD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKG 187
Query: 182 DPDHMREVQVPIL--PACKHYED-RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPG 234
            P  ++ V +PI+  P CK     RI D + CAG  P  G+  D C+GDSGGP +   P 
Sbjct: 188 QPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPF 247
Query: 235 SQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           +  RWY  G+VS GEGC R  + G YT V +   W+  
Sbjct: 248 NN-RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 284

>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel Bicyclic Lactam Inhibitor Length = 305

Iteration: 1
 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 133/278 (47%), Gaps = 32/278 (11%)
Query: 25  PLGARNMATDMAGNPILGS---GRVVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDES 79
           PL  +    D     +L S   GR+V G  AE+G  PW + L+R       CG  ++ + 
Sbjct: 13  PLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDR 72
Query: 80  WVMTAAHCV------DGFEKHYFEVYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEM 131
           WV+TAAHC+        F ++   V  G   R  +    E++  + +I +H  +  R  +
Sbjct: 73  WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENL 132
Query: 132 TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTC----TAVGWGAVFEHGP------ 181
             D+AL++L  P+ ++ Y+ P+CLPD  ET              GWG + E         
Sbjct: 133 DRDIALMKLKKPVAFSDYIHPVCLPD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKG 191
Query: 182 DPDHMREVQVPIL--PACKHYED-RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPG 234
            P  ++ V +PI+  P CK     RI D + CAG  P  G+  D C+GDSGGP +   P 
Sbjct: 192 QPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPF 251
Query: 235 SQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           +  RWY  G+VS GEGC R  + G YT V +   W+  
Sbjct: 252 NN-RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 288

>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1 Length = 424

Iteration: 1
 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 133/278 (47%), Gaps = 32/278 (11%)
Query: 25  PLGARNMATDMAGNPILGS---GRVVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDES 79
           PL  +    D     +L S   GR+V G  AE+G  PW + L+R       CG  ++ + 
Sbjct: 142 PLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDR 201
Query: 80  WVMTAAHCV------DGFEKHYFEVYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEM 131
           WV+TAAHC+        F ++   V  G   R  +    E++  + +I +H  +  R  +
Sbjct: 202 WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENL 261
Query: 132 TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTC----TAVGWGAVFEHGP------ 181
             D+AL++L  P+ ++ Y+ P+CLPD  ET              GWG + E         
Sbjct: 262 DRDIALMKLKKPVAFSDYIHPVCLPD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKG 320
Query: 182 DPDHMREVQVPIL--PACKHYED-RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPG 234
            P  ++ V +PI+  P CK     RI D + CAG  P  G+  D C+GDSGGP +   P 
Sbjct: 321 QPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPF 380
Query: 235 SQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           +  RWY  G+VS GEGC R  + G YT V +   W+  
Sbjct: 381 NN-RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 417

>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 113/230 (49%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +L+  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLLNSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +      ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDR----IADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL              +++ CAG  +GG+D C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDAC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PG+YT+V  +V W+
Sbjct: 174 QGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGIYTKVCNYVSWI 216

>pdb|2A31|A Chain A, Trypsin In Complex With Borate Length = 223

Iteration: 1
 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 19/229 (8%)
Query: 47  VGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRF 106
           VGG      + P+ ++L     F CGG +++  WV++AAHC     K   +V  G     
Sbjct: 2   VGGYTCAANSIPYQVSLNSGSHF-CGGSLINSQWVVSAAHCY----KSRIQVRLGEHNID 56
Query: 107 SFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYS 166
                EQ    ++I+ H  F    + ND+ L++L++P   N  V  + LP         +
Sbjct: 57  VLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPR--SCAAAGT 114
Query: 167 TCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRIA-DVICAGMPQGGRDTCQ 221
            C   GWG     G   P  ++ ++ P+L   +CK  Y  +I  ++IC G  +GG+D+CQ
Sbjct: 115 ECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQ 174
Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           GDSGGP++C          + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 175 GDSGGPVVC-------NGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWI 216

>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tga) In Complex With Eglin C Length = 223

Iteration: 1
 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 114/230 (49%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +      ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDR----IADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL              +++ CAG  +GG+D C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDAC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGD+GGP++C      G+  + G+VS GEGCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDAGGPVVCS-----GK--LQGIVSWGEGCAQKNKPGVYTKVCNYVSWI 216

>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The Alternative Form Length = 290

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 133/278 (47%), Gaps = 32/278 (11%)
Query: 25  PLGARNMATDMAGNPILGS---GRVVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDES 79
           PL  +    D     +L S   GR+V G  AE+G  PW + L+R       CG  ++ + 
Sbjct: 8   PLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDR 67
Query: 80  WVMTAAHCV------DGFEKHYFEVYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEM 131
           WV+TAAHC+        F ++   V  G   R  +    E++  + +I +H  +  R  +
Sbjct: 68  WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENL 127
Query: 132 TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTC----TAVGWGAVFEHGP------ 181
             D+AL++L  P+ ++ Y+ P+CLPD  ET              GWG + E         
Sbjct: 128 DRDIALMKLKKPVAFSDYIHPVCLPD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKG 186
Query: 182 DPDHMREVQVPIL--PACKHYED-RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPG 234
            P  ++ V +PI+  P CK     RI D + CAG  P  G+  D C+GD+GGP +   P 
Sbjct: 187 QPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPF 246
Query: 235 SQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           +  RWY  G+VS GEGC R  + G YT V +   W+  
Sbjct: 247 NN-RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 283

>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex Length = 308

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 133/278 (47%), Gaps = 32/278 (11%)
Query: 25  PLGARNMATDMAGNPILGS---GRVVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDES 79
           PL  +    D     +L S   GR+V G  AE+G  PW + L+R       CG  ++ + 
Sbjct: 26  PLFEKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDR 85
Query: 80  WVMTAAHCV------DGFEKHYFEVYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEM 131
           WV+TAAHC+        F ++   V  G   R  +    E++  + +I +H  +  R  +
Sbjct: 86  WVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENL 145
Query: 132 TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTC----TAVGWGAVFEHGP------ 181
             D+AL++L  P+ ++ Y+ P+CLPD  ET              GWG + E         
Sbjct: 146 DRDIALMKLKKPVAFSDYIHPVCLPD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKG 204
Query: 182 DPDHMREVQVPIL--PACKHYED-RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPG 234
            P  ++ V +PI+  P CK     RI D + CAG  P  G+  D C+GD+GGP +   P 
Sbjct: 205 QPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPF 264
Query: 235 SQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           +  RWY  G+VS GEGC R  + G YT V +   W+  
Sbjct: 265 NN-RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 301

>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A Tripeptide Phosphonate Inhibitor Length = 253

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 124/248 (50%), Gaps = 23/248 (9%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGPDPDHMREVQVPIL--PACKHYED-RIAD-V 207
           PD  ET              GWG + E    P  ++ V +PI+  P CK     RI D +
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWGQPSVLQVVNLPIVERPVCKDSTRIRITDNM 179
Query: 208 ICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
            CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC R  + G YT V 
Sbjct: 180 FCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKYGFYTHVF 238
Query: 265 QFVPWLMS 272
           +   W+  
Sbjct: 239 RLKKWIQK 246

>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin Variant X(99175190)BT Length = 223

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 113/230 (49%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +      ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDR----IADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL              +++ CAG  +GG+D C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDAC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216

>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small Molecules Occupying The S1 Pocket Length = 252

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/248 (33%), Positives = 125/248 (50%), Gaps = 24/248 (9%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGPDPDHMREVQVPIL--PACKHYED-RIAD-V 207
           PD  ET              GWG + E G  P  ++ V +PI+  P CK     RI D +
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKEKG-QPSVLQVVNLPIVERPVCKDSTRIRITDNM 178
Query: 208 ICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
            CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC R  + G YT V 
Sbjct: 179 FCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKYGFYTHVF 237
Query: 265 QFVPWLMS 272
           +   W+  
Sbjct: 238 RLKKWIQK 245

>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165 Length = 250

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/248 (33%), Positives = 126/248 (50%), Gaps = 24/248 (9%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R ++    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTAYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGPDPDHMREVQVPIL--PACKHYED-RIAD-V 207
           PD  ET              GWG + E G  P  ++ V +PI+  P CK     RI D +
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETG-QPSVLQVVNLPIVERPVCKDSTRIRITDNM 178
Query: 208 ICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
            CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC R  + G YT V 
Sbjct: 179 FCAGYKPDEGKRGDACEGDSGGPFVMKSPFN-NRWYQMGIVSWGEGCDRDGKYGFYTHVF 237
Query: 265 QFVPWLMS 272
           +   W+  
Sbjct: 238 RLKKWIQK 245

>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +      ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDR----IADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL              +++ CAG  +GG+D C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDAC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PG+YT+V  +V W+
Sbjct: 174 QGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGIYTKVCNYVSWI 216

>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A Tripeptide Phosphonate Inhibitor Length = 260

Iteration: 1
 Score =  124 bits (311), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/248 (33%), Positives = 125/248 (50%), Gaps = 24/248 (9%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGPDPDHMREVQVPIL--PACKHYED-RIAD-V 207
           PD  ET              GWG + E G  P  ++ V +PI+  P CK     RI D +
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETG-QPSVLQVVNLPIVERPVCKDSTRIRITDNM 178
Query: 208 ICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
            CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC R  + G YT V 
Sbjct: 179 FCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKYGFYTHVF 237
Query: 265 QFVPWLMS 272
           +   W+  
Sbjct: 238 RLKKWIQK 245

>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala ( Ta) In Complex With Eglin C Length = 223

Iteration: 1
 Score =  124 bits (310), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +      ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDR----IADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL              +++ CAG  +GG+D C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDAC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGD+GGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDAGGPVVCS-----GK--LQGIVSWGSGCAQKNKPGVYTKVCNYVSWI 216

>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Length = 223

Iteration: 1
 Score =  124 bits (310), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG      + P+ ++L     F CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCAANSIPYQVSLNSGSHF-CGGSLINSQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F    + ND+ L++L++P      V  + LP         
Sbjct: 56  DVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLXSRVATVSLPR--SCAAAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRIA-DVICAGMPQGGRDTC 220
           + C   GWG     G   P  ++ ++ P+L   +CK  Y  +I  ++IC G  +GG+D+C
Sbjct: 114 TECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C          + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-------NGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWI 216

>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score =  124 bits (310), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +      ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDR----IADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL              +++ CAG  +GG+D+C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PG YT+V  +V W+
Sbjct: 174 QGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGFYTKVCNYVSWI 216

>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant Profactor D Length = 235

Iteration: 1
 Score =  124 bits (310), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 123/236 (52%), Gaps = 16/236 (6%)
Query: 44  GRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGML 103
           GR++GG++AE  A P++ ++  +G   CGGV++ E WV++AAHC++       +V  G  
Sbjct: 6   GRILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAH 65
Query: 104 RRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE 163
                 P++++  V R V H   +   + +DL LLQL+        VRP+    V     
Sbjct: 66  SLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVA 125
Query: 164 PYSTCTAVGWGAVFEHGPDPDHMREVQVPIL--PACK---HYEDRIAD-VICAGMPQGGR 217
           P + C   GWG V   G  PD ++ V +P+L    C    H++  I + ++CA      R
Sbjct: 126 PGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA--ESNRR 183
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMS 272
           D+C+GDSGGPL+C          + GVV+ G   C    +PG+YTRV+ +  W+ S
Sbjct: 184 DSCKGDSGGPLVCG-------GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 232

>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tgpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score =  124 bits (310), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +      ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDR----IADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL              +++ CAG  +GG+D C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDAC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGD+GGP++C      G+  + G+VS GEGCA+ N+PG YT+V  +V W+
Sbjct: 174 QGDAGGPVVCS-----GK--LQGIVSWGEGCAQKNKPGFYTKVCNYVSWI 216

>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score =  123 bits (309), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 112/230 (48%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +      ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDR----IADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL              +++ C G  +GG+D C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCVGYLEGGKDAC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS GEGCA+ N+PG YT+V  +V W+
Sbjct: 174 QGDSGGPVVCS-----GK--LQGIVSWGEGCAQKNKPGFYTKVCNYVSWI 216

>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To D-Phe-Pro-Arg- Chloromethylketone Length = 259

Iteration: 1
 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 125/254 (49%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC R  +PG
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKPG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 112/230 (48%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +      ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDR----IADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL              +++ CAG  +GG+D C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDAC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PG YT+V  +V W+
Sbjct: 174 QGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGFYTKVCNYVSWI 216

>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With Vacant Active Site Length = 238

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/243 (35%), Positives = 120/243 (49%), Gaps = 31/243 (12%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG + E  + PW  ALY    F CGG+++   WV+TAAHC+       ++++ G    
Sbjct: 1   IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCI----SDNYQLWLGRHNL 56
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTN-----------DLALLQLAAPL-RYNRYVRPI 153
           F    T Q   VS    H  F  + + N           DL LL+L  P       V+ +
Sbjct: 57  FDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVV 116
Query: 154 CLPDVTETPEPYSTCTAVGWGAVF-EHGPDPDHMREVQVPILP--ACK--HYEDRIADVI 208
            LP  TE PE  STC A GWG++  E+   PD ++ V + ILP   CK  H +     ++
Sbjct: 117 ELP--TEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQKVTDFML 174
Query: 209 CAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFV 267
           C G  +GG+DTC GDSGGPL+C          + GV S G   C  PN+P V  RV  +V
Sbjct: 175 CVGHLEGGKDTCVGDSGGPLMCDG-------VLQGVTSWGYVPCGTPNKPSVAVRVLSYV 227
Query: 268 PWL 270
            W+
Sbjct: 228 KWI 230

>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha- Thrombin And Prethrombin-2: Movement Of The Yppw Segment And Active Site Residues Upon Ligand Binding Length = 308

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 129/281 (45%), Gaps = 30/281 (10%)
Query: 25  PLGARNMATDMAGNPILGS---GRVVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDES 79
           PL  +    D     +  S   GR+V G+ AE+G  PW + L+R       CG  ++ + 
Sbjct: 26  PLFEKKQVQDQTEKELFESYIEGRIVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDR 85
Query: 80  WVMTAAHCV------DGFEKHYFEVYAGMLRRFSFS-PTEQVRPVSRIVMHSMFKRAE-M 131
           WV+TAAHC+        F      V  G   R  +    E++  + +I +H  +   E +
Sbjct: 86  WVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENL 145
Query: 132 TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYS---TCTAVGWGAVFEHGP------D 182
             D+ALL+L  P+  + Y+ P+CLPD     +           GWG   E          
Sbjct: 146 DRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQ 205
Query: 183 PDHMREVQVPIL--PACK-HYEDRIAD-VICAGMP--QGGR-DTCQGDSGGPLLCPVPGS 235
           P  ++ V +P++  P CK     RI D + CAG    +G R D C+GDSGGP +   P  
Sbjct: 206 PSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSP-Y 264
Query: 236 QGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER 276
             RWY  G+VS GEGC R  + G YT V +   W+    +R
Sbjct: 265 NNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDR 305

>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With Ala- Ala-phe-chloromethylketone Length = 224

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 121/242 (50%), Gaps = 27/242 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEVYAGMLR 104
           ++ G     G+ PW +AL      HCGGV+++E WV+TAAHC ++ +  H      G  R
Sbjct: 1   IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRR 60
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
                 ++  R       H  +      NDL L++L +  R +  V+ + LP   E   P
Sbjct: 61  AQRIKASKSFR-------HPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCE--PP 111
Query: 165 YSTCTAVGWGAVFEHGPD---PDHMREVQVPILP---ACKHYEDRIAD-VICAGMPQGGR 217
            +TCT  GWG      PD   P  +  V V ++      K Y+D + + ++CAG+P   +
Sbjct: 112 GTTCTVSGWGTTTS--PDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKK 169
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMSNSER 276
           + C GDSGGPL+C       R  + G+VS G   C +PN+PGVYT+V +F  W+    ++
Sbjct: 170 NACNGDSGGPLVC-------RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKK 222
Query: 277 AK 278
            +
Sbjct: 223 HR 224

>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A Secretion Protein In E.Coli Length = 227

Iteration: 1
 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 118/234 (50%), Gaps = 27/234 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHC-VDGFEKHYFEVYAGMLR 104
           ++ G     G+ PW +AL      HCGGV+++E WV+TAAHC ++ +  H      G  R
Sbjct: 1   IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRR 60
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
                 ++  R       H  +      NDL L++L +  R +  V+ + LP   E   P
Sbjct: 61  AQRIKASKSFR-------HPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCE--PP 111
Query: 165 YSTCTAVGWGAVFEHGPD---PDHMREVQVPILP---ACKHYEDRIAD-VICAGMPQGGR 217
            +TCT  GWG      PD   P  +  V V ++      K Y+D + + ++CAG+P   +
Sbjct: 112 GTTCTVSGWGTTTS--PDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKK 169
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWL 270
           + C GDSGGPL+C       R  + G+VS G   C +PN+PGVYT+V +F  W+
Sbjct: 170 NACNGDSGGPLVC-------RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWI 216

>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +      ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDR----IADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL              +++ CAG  +GG+D C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDAC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PG YT++  +V W+
Sbjct: 174 QGDSGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGFYTKLCNYVSWI 216

>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North Atlantic Salmon At 1.61 Angstroms Resolution Length = 236

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 46  VVGGKKAELGAWPWLIAL-YRDG--FFH-CGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           VVGG+ A+  +WPW I+L Y+ G  ++H CGG ++ + WVMTAAHCVD      + V  G
Sbjct: 1   VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVD--SARTWRVVLG 58
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTN--DLALLQLAAPLRYNRYVRPICLPDVT 159
                +    EQ+  V+ + +HS +   ++    D+ALL+L      N  V+   LP   
Sbjct: 59  EHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSN 118
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPIL--PACKHY----EDRIADVICAGMP 213
           +     + C   GWG     GP  D +++  +P +    C             ++CAG  
Sbjct: 119 QILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCAG-- 176
Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVS--HGEGCARPNEPGVYTRVSQFVPWL 270
            G    C GDSGGPL C V GS   +YV GV S     GC    +P V+TRVS ++ W+
Sbjct: 177 GGANSGCNGDSGGPLNCQVNGS---YYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWM 232

>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +      ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDR----IADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL              +++ CAG  +GG+D C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDAC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGD+GGP++C      G+  + G+VS G GCA+ N+PG YT+V  +V W+
Sbjct: 174 QGDAGGPVVC-----SGK--LQGIVSWGSGCAQKNKPGFYTKVCNYVSWI 216

>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K Length = 259

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 125/254 (49%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGCAR  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCARKGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc) Complexed With Ppack Length = 240

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 19/239 (7%)
Query: 46  VVGGKKAELGAWPWLIALY-RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           ++ GK    G  PW + L        CG V++  SWV+TAAHC+D  +K    +    LR
Sbjct: 1   LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLLVRLGEYDLR 60
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV----TE 160
           R+     E    +  + +H  + ++   ND+ALL LA P   ++ + PICLPD      E
Sbjct: 61  RWE--KWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERE 118
Query: 161 TPEPYSTCTAVGWGAVFEHGPDPDHMRE-----VQVPILP--ACKHYEDRIA--DVICAG 211
             +        GWG       +    R      +++P++P   C      +   +++CAG
Sbjct: 119 LNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAG 178
Query: 212 MPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           +    +D C+GDSGGP+   V    G W++ G+VS GEGC   +  GVYT+VS+++ W+
Sbjct: 179 ILGDRQDACEGDSGGPM---VASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWI 234

>pdb|1AUT|C Chain C, Human Activated Protein C Length = 250

Iteration: 1
 Score =  121 bits (304), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 19/239 (7%)
Query: 46  VVGGKKAELGAWPWLIALY-RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           ++ GK    G  PW + L        CG V++  SWV+TAAHC+D  +K    +    LR
Sbjct: 1   LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLLVRLGEYDLR 60
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV----TE 160
           R+     E    +  + +H  + ++   ND+ALL LA P   ++ + PICLPD      E
Sbjct: 61  RWE--KWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERE 118
Query: 161 TPEPYSTCTAVGWGAVFEHGPDPDHMRE-----VQVPILP--ACKHYEDRIA--DVICAG 211
             +        GWG       +    R      +++P++P   C      +   +++CAG
Sbjct: 119 LNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAG 178
Query: 212 MPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           +    +D C+GDSGGP+   V    G W++ G+VS GEGC   +  GVYT+VS+++ W+
Sbjct: 179 ILGDRQDACEGDSGGPM---VASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWI 234

>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With Benzamidine Length = 220

Iteration: 1
 Score =  121 bits (304), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 110/229 (48%), Gaps = 18/229 (7%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG +    +    ++L   G+  CGG ++ + WV++AAHC     K    V  G    
Sbjct: 1   IVGGYECTKHSQAHQVSL-NSGYHFCGGSLVSKDWVVSAAHCY----KSVLRVRLGEHHI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                TEQ    S ++ H  +    + ND+ L++L  P   N+YV  + LP  TE     
Sbjct: 56  RVNEGTEQYISSSSVIRHPNYSSYNINNDIMLIKLTKPATLNQYVHAVALP--TECAADA 113
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP---ACKHYEDRIA-DVICAGMPQGGRDTCQ 221
           + CT  GWG       D D ++ + +PIL        Y   I   + CAG  +GG+D+CQ
Sbjct: 114 TMCTVSGWGNTMSSVADGDKLQCLSLPILSHADCANSYPGMITQSMFCAGYLEGGKDSCQ 173
Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           GDSGGP++C          + GVVS G GCA  + PGVY +V     W+
Sbjct: 174 GDSGGPVVC-------NGVLQGVVSWGYGCAERDHPGVYAKVCVLSGWV 215

>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen Activator In Complex With Dansyl-Egr-Cmk (Dansyl-Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score =  121 bits (304), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 125/253 (49%), Gaps = 27/253 (10%)
Query: 45  RVVGGKKAELGAWPWLIALYRDGF------FHCGGVVLDESWVMTAAHCV-DGFEKHYFE 97
           R+ GG  A++ + PW  A++          F CGG+++   W+++AAHC  + F  H+  
Sbjct: 13  RIKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLT 72
Query: 98  VYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAP----LRYNRYVRPI 153
           V  G   R      EQ   V + ++H  F      ND+ALLQL +      + +  VR +
Sbjct: 73  VILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTV 132
Query: 154 CLPDVTETPEPYSTCTAVGWGAVFEHGP-DPDHMREVQVPILPACK----HYEDRIA--D 206
           CLP        ++ C   G+G      P   + ++E  V + P+ +    H  +R    +
Sbjct: 133 CLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDN 192
Query: 207 VICAGMPQGG------RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVY 260
           ++CAG  + G       D CQGDSGGPL+C    + GR  + G++S G GC + + PGVY
Sbjct: 193 MLCAGDTRSGGPQANLHDACQGDSGGPLVCL---NDGRMTLVGIISWGLGCGQKDVPGVY 249
Query: 261 TRVSQFVPWLMSN 273
           T+V+ ++ W+  N
Sbjct: 250 TKVTNYLDWIRDN 262

>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By Targeting The Exosite On Factor D Length = 228

Iteration: 1
 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 121/234 (51%), Gaps = 16/234 (6%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG++AE  A P++ ++  +G   CGGV++ E WV++AAHC++       +V  G    
Sbjct: 1   ILGGREAEAHARPYMASVQVNGEHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 60
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               P++++  V R V H   +   + +DL LLQL+        VRP+    V    EP 
Sbjct: 61  SQPEPSKRLYDVLRAVPHPDSRPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVEPG 120
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPIL--PACK---HYEDRIAD-VICAGMPQGGRDT 219
           + C   GWG V   G  PD ++ V +P+L    C    H++  I   ++CA      RD+
Sbjct: 121 TLCDVAGWGIVSHAGRRPDRLQHVLLPVLDRATCNRRTHHDGAITQRMMCA--ESNRRDS 178
Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMS 272
           C+GDSGGPL+C          + GVV+ G   C    +PG+YTRV+ +  W+ S
Sbjct: 179 CKGDSGGPLVCG-------GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 225

>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt Length = 230

Iteration: 1
 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/236 (36%), Positives = 117/236 (49%), Gaps = 20/236 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRD---GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           VVGG +A  G +P+++ L  +   GF  CGG +  +  V+TAAHCV G   +      G 
Sbjct: 1   VVGGTRAAQGEFPFMVRLINEENEGF--CGGALYAQDIVLTAAHCVSGSGNNTSITATGG 58
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
           +     S   +VR  ++++    F +     D AL++LA P+      +P  L   T T 
Sbjct: 59  VVDLQSSSAVKVRS-TKVLQAPGFTKETYGKDWALIKLAQPIN-----QPT-LKIATTTA 111
Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRIA---DVICAGMPQ-GG 216
               T T  GWGA  E G    ++ +  VP +   AC+     I    ++ICAG P  GG
Sbjct: 112 YNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYPDTGG 171
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
            DTCQGDSGGP+      +   W   G+VS G GCARP  PGVYT VS F   + S
Sbjct: 172 VDTCQGDSGGPMF--RKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIAS 225

>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity Length = 228

Iteration: 1
 Score =  121 bits (303), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 122/234 (52%), Gaps = 16/234 (6%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG++AE  A P++ ++  +G   CGGV++ E WV++AAHC++       +V  G    
Sbjct: 1   ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 60
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               P++++  V R V H  ++   + +DL LLQL+        VRP+    V     P 
Sbjct: 61  SQPEPSKRLYDVLRAVPHPDYQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPG 120
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPIL--PACK---HYEDRIAD-VICAGMPQGGRDT 219
           + C   GWG V   G  PD ++ V +P+L    C    H++  I + ++CA      RD+
Sbjct: 121 TLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA--ESNRRDS 178
Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMS 272
           C+GDSGGPL+C          + GVVS G   C    +PG+YTRV+ +  W+ S
Sbjct: 179 CKGDSGGPLVCG-------GVLEGVVSWGSRVCGNRKKPGIYTRVASYAAWIDS 225

>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 259

Iteration: 1
 Score =  121 bits (303), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 124/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTTNVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D CQGDSGGP +   P +  RWY  G+VS GEGC R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACQGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure Solution And Refinement At 1.8 Angstroms Resolution Length = 235

Iteration: 1
 Score =  121 bits (303), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/242 (34%), Positives = 122/242 (50%), Gaps = 32/242 (13%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG K E  + PW +A+  +  + CGGV++D SWV+TAAHC      + ++V  G    
Sbjct: 1   IVGGYKCEKNSQPWQVAVINE--YLCGGVLIDPSWVITAAHCY----SNNYQVLLGRNNL 54
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTND-----------LALLQLAAPLRYNRYVRPIC 154
           F   P  Q R V +   H  +    +TND           L LL L+ P      V+ I 
Sbjct: 55  FKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVID 114
Query: 155 LPDVTETPEPYSTCTAVGWGAVFEHGPDPDH-MREVQVPILPACK---HYEDRIADV-IC 209
           LP  T+ P+  STC A GWG+         H ++ V + +L   K    Y+D + DV +C
Sbjct: 115 LP--TKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDNVTDVMLC 172
Query: 210 AGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVP 268
           AG  +GG+DTC GDSGGPL+C          + G+ S G   CA+P  P +Y ++ +F  
Sbjct: 173 AGEMEGGKDTCAGDSGGPLIC-------DGVLQGITSGGATPCAKPKTPAIYAKLIKFTS 225
Query: 269 WL 270
           W+
Sbjct: 226 WI 227

>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a Length = 228

Iteration: 1
 Score =  120 bits (302), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 16/234 (6%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG++AE  A P++ ++  +G   CGGV++ E WV++AAHC++       +V  G    
Sbjct: 1   ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 60
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               P++++  V R V H   +   + +DL LLQL+        VRP+    V     P 
Sbjct: 61  SQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPG 120
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPIL--PACK---HYEDRIAD-VICAGMPQGGRDT 219
           + C   GWG V   G  PD ++ V +P+L    C    H++  I + ++CA      RD+
Sbjct: 121 TLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA--ESNRRDS 178
Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMS 272
           C+GDSGGPL+C          + GVV+ G   C    +PG+YTRV+ +  W+ S
Sbjct: 179 CKGDSGGPLVCG-------GVLEGVVTSGSAVCGNRKKPGIYTRVASYAAWIDS 225

>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight Into Structural Radiation Damage Length = 223

Iteration: 1
 Score =  120 bits (302), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRI-ADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL   +CK  Y  +I +++ CA   +G  D+C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAYGLEGKGDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GC   N+PGVYT+V  +V W+
Sbjct: 174 QGDSGGPVVC-----SGK--LQGIVSWGSGCQAKNKPGVYTKVCNYVSWI 216

>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor Complexed With Bovine Trypsin Length = 220

Iteration: 1
 Score =  120 bits (302), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 119/230 (51%), Gaps = 22/230 (9%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPIL--PACKH-YEDRI-ADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL   +CK  Y  +I +++ CAG+   G D+C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGLE--GGDSC 171
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS G GCA+ N+PGVYT+V  +V W+
Sbjct: 172 QGDSGGPVVC-----SGK--LQGIVSWGSGCAK-NKPGVYTKVCNYVSWI 213

>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With Fibrinopeptide A (7- 16) Length = 260

Iteration: 1
 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 125/255 (49%), Gaps = 29/255 (11%)
Query: 45  RVVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYF 96
           R+V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++  
Sbjct: 1   RIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDL 60
Query: 97  EVYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPIC 154
            V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+C
Sbjct: 61  LVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVC 120
Query: 155 LPDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED 202
           LPD  ET              GWG + E          P  ++ V +PI+  P CK    
Sbjct: 121 LPD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTR 179
Query: 203 -RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEP 257
            RI D + CAG  P  G+  D C+GD+GGP +   P +  RWY  G+VS GEGC R  + 
Sbjct: 180 IRITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKY 238
Query: 258 GVYTRVSQFVPWLMS 272
           G YT V +   W+  
Sbjct: 239 GFYTHVFRLKKWIQK 253

>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase And Human Beta-Casomorphin-7 At Ph 5 Length = 240

Iteration: 1
 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/239 (35%), Positives = 124/239 (51%), Gaps = 20/239 (8%)
Query: 46  VVGGKKAELGAWPWLIAL-YRDG--FFH-CGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           VVGG +A+  +WP  I+L YR G  + H CGG ++ ++WVMTAAHCVD   +  F V  G
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVD--RELTFRVVVG 58
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTN--DLALLQLAAPLRYNRYVRPICLPDVT 159
                  + TEQ   V +IV+H  +   ++    D+ALL+LA  +  N YV+   LP   
Sbjct: 59  EHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAG 118
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVP-----ILPACKHYEDRIAD-VICAGMP 213
                 S C   GWG    +G     +++  +P     I  +  ++   + + ++CAG  
Sbjct: 119 TILRNNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-G 177
Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWL 270
            G R  CQGDSGGPL C V    G++ V GV S     GC    +P V+TRVS ++ W+
Sbjct: 178 DGVRSGCQGDSGGPLHCLV---NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWI 233

>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 111/230 (48%), Gaps = 19/230 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +      ND+ L++L +       V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSETYNNDIMLIKLKSAASLXSRVASISLP--TSCASAG 113
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPACKHYEDR----IADVICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL              +++ C G  +GG+D C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCVGYLEGGKDAC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           QGDSGGP++C      G+  + G+VS GEGCA+ N+PG YT+V  +V W+
Sbjct: 174 QGDSGGPVVCS-----GK--LQGIVSWGEGCAQKNKPGFYTKVCNYVSWI 216

>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl Dipeptide Anilide Inhibitor With Elastase Length = 240

Iteration: 1
 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/239 (35%), Positives = 124/239 (51%), Gaps = 20/239 (8%)
Query: 46  VVGGKKAELGAWPWLIAL-YRDG--FFH-CGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           VVGG +A+  +WP  I+L YR G  + H CGG ++ ++WVMTAAHCVD   +  F V  G
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVD--RELTFRVVVG 58
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTN--DLALLQLAAPLRYNRYVRPICLPDVT 159
                  + TEQ   V +IV+H  +   ++    D+ALL+LA  +  N YV+   LP   
Sbjct: 59  EHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAG 118
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVP-----ILPACKHYEDRIAD-VICAGMP 213
                 S C   GWG    +G     +++  +P     I  +  ++   + + ++CAG  
Sbjct: 119 TILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-G 177
Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWL 270
            G R  CQGDSGGPL C V    G++ V GV S     GC    +P V+TRVS ++ W+
Sbjct: 178 DGVRSGCQGDSGGPLHCLV---NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWI 233

>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack Length = 259

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 124/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride Length = 257

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 124/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D- Phe-Pro-Arg-Chloromethylketone Length = 259

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 124/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKIG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-1 Length = 406

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 120/250 (48%), Gaps = 28/250 (11%)
Query: 44  GRVVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCV-------------- 88
            ++  G+ A+ G  PW+  L + +G   CGG +L  SW++TAAHC+              
Sbjct: 154 AQIFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPEDPTLRDS 213
Query: 89  DGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNR 148
           D      F++  G   R      EQ   V    +H  +      ND+AL++L      N 
Sbjct: 214 DLLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNA 273
Query: 149 YVRPICLPDVTETPEPYSTCTAV-GWGAVFEHGPDPDHMREVQVPIL--PACKH-----Y 200
           +V PICLP   E P+       V GWG  F     P+ + E+++PI+    C+       
Sbjct: 274 FVMPICLP---EGPQQEGAMVIVSGWGKQFLQR-FPETLMEIEIPIVDHSTCQKAYAPLK 329
Query: 201 EDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVY 260
           +    D+ICAG  +GG+D C GDSGGP++  +   +G+WY+ G VS G+ C + +  GVY
Sbjct: 330 KKVTRDMICAGEKEGGKDACAGDSGGPMVT-LNRERGQWYLVGTVSWGDDCGKKDRYGVY 388
Query: 261 TRVSQFVPWL 270
           + +     W+
Sbjct: 389 SYIHHNKDWI 398

>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme Length = 228

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 16/234 (6%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG++AE  A P++ ++  +G   CGGV++ E WV++AAHC++       +V  G    
Sbjct: 1   ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 60
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               P++++  V R V H   +   + +DL LLQL+        VRP+    V     P 
Sbjct: 61  SQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPG 120
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPIL--PACK---HYEDRIAD-VICAGMPQGGRDT 219
           + C   GWG V   G  PD ++ V +P+L    C    H++  I + ++CA      RD+
Sbjct: 121 TLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA--ESNRRDS 178
Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMS 272
           C+GDSGGPL+C          + GVV+ G   C    +PG+YTRV+ +  W+ S
Sbjct: 179 CKGDSGGPLVCG-------GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 225

>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of The S' Subsites Of Substrates And Inhibitors Length = 259

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 124/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free Form Length = 250

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/248 (33%), Positives = 123/248 (49%), Gaps = 26/248 (10%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGPDPDHMREVQVPIL--PACKHYED-RIAD-V 207
           PD  ET              GWG +      P  ++ V +PI+  P CK     RI D +
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNL---KGQPSVLQVVNLPIVERPVCKDSTRIRITDNM 176
Query: 208 ICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
            CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC R  + G YT V 
Sbjct: 177 FCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKYGFYTHVF 235
Query: 265 QFVPWLMS 272
           +   W+  
Sbjct: 236 RLKKWIQK 243

>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa, Ser190ALA190 PROTEASE, Structure-Based Drug Design Length = 258

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 124/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa] Length = 252

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 124/252 (49%), Gaps = 27/252 (10%)
Query: 46  VVGGKKAELGAWPWLIALYRD------GFFHCGGVVLDESWVMTAAHCV-DGFEKHYFEV 98
           + GG  A++ + PW  A++          F CGG+++   W+++AAHC  + F  H+  V
Sbjct: 1   IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTV 60
Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAP----LRYNRYVRPIC 154
             G   R      EQ   V + ++H  F      ND+ALLQL +      + +  VR +C
Sbjct: 61  ILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVC 120
Query: 155 LPDVTETPEPYSTCTAVGWGAVFEHGP-DPDHMREVQVPILPACK----HYEDRIA--DV 207
           LP        ++ C   G+G      P   + ++E  V + P+ +    H  +R    ++
Sbjct: 121 LPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNM 180
Query: 208 ICAGMPQGG------RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYT 261
           +CAG  + G       D CQGDSGGPL+C    + GR  + G++S G GC + + PGVYT
Sbjct: 181 LCAGDTRSGGPQANLHDACQGDSGGPLVCL---NDGRMTLVGIISWGLGCGQKDVPGVYT 237
Query: 262 RVSQFVPWLMSN 273
           +V+ ++ W+  N
Sbjct: 238 KVTNYLDWIRDN 249

>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With Porcine Elastase Length = 240

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/239 (35%), Positives = 123/239 (51%), Gaps = 20/239 (8%)
Query: 46  VVGGKKAELGAWPWLIAL-YRDG--FFH-CGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           VVGG +A+  +WP  I+L YR G  + H CGG ++ ++WVMTAAHCVD   +  F V  G
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVD--RELTFRVVVG 58
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTN--DLALLQLAAPLRYNRYVRPICLPDVT 159
                    TEQ   V +IV+H  +   ++    D+ALL+LA  +  N YV+   LP   
Sbjct: 59  EHNLNQNDGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAG 118
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVP-----ILPACKHYEDRIAD-VICAGMP 213
                 S C   GWG    +G     +++  +P     I  +  ++   + + ++CAG  
Sbjct: 119 TILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-G 177
Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWL 270
            G R  CQGDSGGPL C V    G++ V GV S     GC    +P V+TRVS ++ W+
Sbjct: 178 DGVRSGCQGDSGGPLHCLV---NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWI 233

>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent, Benzamidine-Based Synthetic Inhibitor Length = 257

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 124/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To D-phe-pro-arg- Chloromethylketone Length = 259

Iteration: 1
 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 124/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKFG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1 Length = 251

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 119/248 (47%), Gaps = 28/248 (11%)
Query: 46  VVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCV--------------DG 90
           +  G+ A+ G  PW+  L + +G   CGG +L  SW++TAAHC+              D 
Sbjct: 1   IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60
Query: 91  FEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYV 150
                F++  G   R      EQ   V    +H  +      ND+AL++L      N +V
Sbjct: 61  LSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFV 120
Query: 151 RPICLPDVTETPEPYSTCTAV-GWGAVFEHGPDPDHMREVQVPIL--PACKH-----YED 202
            PICLP   E P+       V GWG  F     P+ + E+++PI+    C+       + 
Sbjct: 121 MPICLP---EGPQQEGAMVIVSGWGKQFLQRF-PETLMEIEIPIVDHSTCQKAYAPLKKK 176
Query: 203 RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTR 262
              D+ICAG  +GG+D C GDSGGP++  +   +G+WY+ G VS G+ C + +  GVY+ 
Sbjct: 177 VTRDMICAGEKEGGKDACAGDSGGPMVT-LNRERGQWYLVGTVSWGDDCGKKDRYGVYSY 235
Query: 263 VSQFVPWL 270
           +     W+
Sbjct: 236 IHHNKDWI 243

>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+ Form Length = 259

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 124/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGPLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine Thrombin Length = 259

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 121/253 (47%), Gaps = 27/253 (10%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGWDAEKGIAPWQVMLFRKSPQELLCGASLISDRWVLTAAHCILYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFS-PTEQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+ALL+L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCL 120
Query: 156 PD---VTETPEPYSTCTAVGWGAVFE------HGPDPDHMREVQVPIL--PACK-HYEDR 203
           PD   VT            GWG + E      +   P  ++ V +PI+  P CK     R
Sbjct: 121 PDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKASTRIR 180
Query: 204 IAD-VICAGMPQGGR---DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGV 259
           I D + CAG         D C+GDSGGP +   P +  RWY  G+VS GEGC R  + G 
Sbjct: 181 ITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFN-NRWYQMGIVSWGEGCDRKGKYGF 239
Query: 260 YTRVSQFVPWLMS 272
           YT V +   W+  
Sbjct: 240 YTHVFRLKAWIQK 252

>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex Length = 259

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 127/254 (50%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV--DGFEKHYFE---- 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+    ++K++ E    
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFIENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a Length = 228

Iteration: 1
 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 121/234 (51%), Gaps = 16/234 (6%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG++AE  A P++ ++  +G   CGGV++ E WV++AAHC++       +V  G    
Sbjct: 1   ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 60
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               P++++  V R V H   +   + +DL LLQL+        VRP+    V     P 
Sbjct: 61  SQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPG 120
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPIL--PACK---HYEDRIAD-VICAGMPQGGRDT 219
           + C   GWG V   G  PD ++ V +P+L    C    H++  I + ++CA      RD+
Sbjct: 121 TLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA--ESNRRDS 178
Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMS 272
           C+GD+GGPL+C          + GVV+ G   C    +PG+YTRV+ +  W+ S
Sbjct: 179 CKGDAGGPLVCG-------GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 225

>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An Unoccupied Active Site Length = 259

Iteration: 1
 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 124/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+GD+GGP +   P +  RWY  G+VS GEGC R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEGDAGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186, 186a, 186b, 186c And 222 Replaced By Murine Thrombin Equivalents Length = 259

Iteration: 1
 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 121/254 (47%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGMPQGGR---DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG         D C+GDSGGP +   P +  RWY  G+VS GEGC R  + G
Sbjct: 180 RITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRKGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k Length = 259

Iteration: 1
 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 124/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS G+GC R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGKGCDRDGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self- Inhibited Conformation Length = 259

Iteration: 1
 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 124/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  ++AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRNIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To Ppack Length = 259

Iteration: 1
 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 123/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+ DSGGP +   P +  RWY  G+VS GEGC R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEADSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|4GSO|A Chain A, Structure Of Jararacussin-I Length = 232

Iteration: 1
 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 124/235 (52%), Gaps = 21/235 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           V+GG + ++   P+L  LY  G+F CG  ++++ WV+TAAHC    +   F++  G+  +
Sbjct: 1   VLGGDECDINEHPFLAFLYSHGYF-CGLTLINQEWVVTAAHC----DSTNFQMQLGVHSK 55
Query: 106 FSFSPTEQVR-PVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
              +  EQ R P  + +  +      +  D+ L++L  P+  ++++ P+ LP  +  P  
Sbjct: 56  KVLNEDEQTRNPKEKFICPNKNMSEVLDKDIMLIKLDKPISNSKHIAPLSLP--SNPPSV 113
Query: 165 YSTCTAVGWGAVF---EHGPDPDHMREVQVPILPACKHYEDRI--ADVICAGMPQGGRDT 219
            S C  +GWG++    E  PD  +   + +     C+   + +     +CAG+ +GG+DT
Sbjct: 114 GSVCRIMGWGSITIPNETYPDVPYCANINLVDYEVCQGAYNGLPAKTTLCAGVLEGGKDT 173
Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPWLMSN 273
           C GDSGGPL+C      G++   G+VS+G   C +  +PG+YT V  +  W+  N
Sbjct: 174 CVGDSGGPLIC-----NGQF--QGIVSYGAHSCGQGPKPGIYTNVFDYTDWIQRN 221

>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN Thrombin (Space Group P2(1)2(1)2(1)) Length = 259

Iteration: 1
 Score =  117 bits (294), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 123/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS G GC R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSAGAGCDRDGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin Mutant W215aE217A IN FREE FORM Length = 257

Iteration: 1
 Score =  117 bits (294), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 123/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS G GC R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSAGAGCDRDGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 253

Iteration: 1
 Score =  117 bits (294), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 122/244 (50%), Gaps = 22/244 (9%)
Query: 43  SGRVVGGKKAELGAWPWLIALY--RDGFFH--CGGVVLDESWVMTAAHCVDGFEKHYFEV 98
           S RVV G+ A   +W W ++L   +DG FH  CGG ++   WV+TA HC+       ++V
Sbjct: 9   SSRVVNGEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIS--TSRTYQV 66
Query: 99  YAGMLRRFSFSPTEQVRPVS--RIVMHSMFKRAEMT--NDLALLQLAAPLRYNRYVRPIC 154
             G   R     +EQV P++   + +H ++    +   ND+AL++L+   +    V+   
Sbjct: 67  VLGEYDRSVLQGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLAN 126
Query: 155 LPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKHYE----DRIADVI 208
           LP   +     + C   GWG ++  GP PD ++E  +P++    C  Y+         ++
Sbjct: 127 LPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQEALLPVVDYEHCSQYDWWGITVKKTMV 186
Query: 209 CAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVS--HGEGCARPNEPGVYTRVSQF 266
           CAG     R  C GDSGGPL C  P + G W V GV S     GC    +P V+TRVS F
Sbjct: 187 CAGGDT--RSGCDGDSGGPLNC--PAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAF 242
Query: 267 VPWL 270
           + W+
Sbjct: 243 IDWI 246

>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease Of Toll Pathway Length = 408

Iteration: 1
 Score =  117 bits (293), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 127/260 (48%), Gaps = 39/260 (15%)
Query: 43  SGRVVGGKKAELGAWPWLIALYRDGF----FHCGGVVLDESWVMTAAHCVDGFEKHYFEV 98
           S RV  G + +L + PW+  L    F    F CGG ++ E +++TAAHCV G +   +E+
Sbjct: 116 SQRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVHGLQNDLYEI 175
Query: 99  YAGMLRRFSFSPTEQVRP---------------VSRIVMHSMFKRAEMTNDLALLQLAAP 143
             G  R    S  E  R                + + ++H  +    + +D+ALL+L   
Sbjct: 176 RLGEHR---ISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRS 232
Query: 144 LRYNRYVRPICLP---DVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK 198
           + + ++++PICLP   ++ E  E  ST    GWG   E+G   D + +  VP+ P  AC 
Sbjct: 233 VPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTT-ENGSSSDVLLQANVPLQPRSACS 291
Query: 199 HYEDRIADV--ICAGMPQGG--RDTCQGDSGGPLLCPVP--GSQGRWYVA-GVVSHG-EG 250
               R   +  +C G   GG  +D+C+GDSGGPL  P    G      V  G+VS G   
Sbjct: 292 QAYRRAVPLSQLCVG---GGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVT 348
Query: 251 CARPNEPGVYTRVSQFVPWL 270
           C + + PG+YT V ++V W+
Sbjct: 349 CGQISLPGLYTNVGEYVQWI 368

>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The Extracellular Fragment Of Murine Par3 Length = 258

Iteration: 1
 Score =  117 bits (293), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 121/253 (47%), Gaps = 27/253 (10%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGWDAEKGIAPWQVMLFRKSPQELLCGASLISDRWVLTAAHCILYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFS-PTEQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+ALL+L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCL 120
Query: 156 PD---VTETPEPYSTCTAVGWGAVFE------HGPDPDHMREVQVPIL--PACK-HYEDR 203
           PD   VT            GWG + E      +   P  ++ V +PI+  P CK     R
Sbjct: 121 PDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKASTRIR 180
Query: 204 IAD-VICAGMPQGGR---DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGV 259
           I D + CAG         D C+GD+GGP +   P +  RWY  G+VS GEGC R  + G 
Sbjct: 181 ITDNMFCAGFKVNDTKRGDACEGDAGGPFVMKSPFN-NRWYQMGIVSWGEGCDRKGKYGF 239
Query: 260 YTRVSQFVPWLMS 272
           YT V +   W+  
Sbjct: 240 YTHVFRLKRWIQK 252

>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors Length = 259

Iteration: 1
 Score =  117 bits (293), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 123/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC    + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCRDDGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt Length = 229

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/235 (34%), Positives = 114/235 (48%), Gaps = 19/235 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRD---GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           VVGG +A  G +P+++ L  +   GF  CGG +  +  V+TAAHCV G   +      G 
Sbjct: 1   VVGGTRAAQGEFPFMVRLINEENEGF--CGGALYAQDIVLTAAHCVSGSGNNTSITATGG 58
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
           +     S   +VR  ++++    F +     D AL++LA P+      +P  L   T T 
Sbjct: 59  VVDLQSSSAVKVRS-TKVLQAPGFTKETYGKDWALIKLAQPIN-----QPT-LKIATTTA 111
Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRIA---DVICAGMPQGGR 217
               T T  GWGA  E G    ++ +  VP +   AC+     I    ++ICAG      
Sbjct: 112 YNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYDTKQE 171
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           DTCQGDSGGP+      +   W   G+VS GEGCAR  + GVYT VS F   + S
Sbjct: 172 DTCQGDSGGPMF--RKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIAS 224

>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To Ppack Length = 259

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 123/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D C+ DSGGP +   P +  RWY  G+VS GEGC R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDACEPDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRDGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE THROMBIN Length = 258

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 120/253 (47%), Gaps = 27/253 (10%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGWDAEKGIAPWQVMLFRKSPQELLCGASLISDRWVLTAAHCILYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFS-PTEQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+ALL+L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLDRDIALLKLKKPVPFSDYIHPVCL 120
Query: 156 PD---VTETPEPYSTCTAVGWGAVFE------HGPDPDHMREVQVPIL--PACK-HYEDR 203
           PD   VT            GWG + E      +   P  ++ V +PI+  P CK     R
Sbjct: 121 PDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKASTRIR 180
Query: 204 IAD-VICAGMPQGGR---DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGV 259
           I D + CAG         D C+GDSGGP +   P +  RWY  G+VS G GC R  + G 
Sbjct: 181 ITDNMFCAGFKVNDTKRGDACEGDSGGPFVMKSPFN-NRWYQMGIVSAGAGCDRKGKYGF 239
Query: 260 YTRVSQFVPWLMS 272
           YT V +   W+  
Sbjct: 240 YTHVFRLKRWIQK 252

>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 259

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 121/257 (47%), Gaps = 27/257 (10%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G+ AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F      
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLL 60
Query: 98  VYAGMLRRFSFS-PTEQVRPVSRIVMHSMFKRAE-MTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +   E +  D+ALL+L  P+  + Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCL 120
Query: 156 PDVTETPEPYS---TCTAVGWGAVFEHGP------DPDHMREVQVPIL--PACK-HYEDR 203
           PD     +           GWG   E          P  ++ V +P++  P CK     R
Sbjct: 121 PDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIR 180
Query: 204 IAD-VICAGMP--QGGR-DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGV 259
           I D + CAG    +G R D C+GDSGGP +   P    RWY  G+VS GEGC R  + G 
Sbjct: 181 ITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSP-YNNRWYQMGIVSWGEGCDRDGKYGF 239
Query: 260 YTRVSQFVPWLMSNSER 276
           YT V +   W+    +R
Sbjct: 240 YTHVFRLKKWIQKVIDR 256

>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease Inhibitor Ecotin Length = 256

Iteration: 1
 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 121/257 (47%), Gaps = 27/257 (10%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G+ AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F      
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLL 60
Query: 98  VYAGMLRRFSFS-PTEQVRPVSRIVMHSMFKRAE-MTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +   E +  D+ALL+L  P+  + Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCL 120
Query: 156 PDVTETPEPYS---TCTAVGWGAVFEHGP------DPDHMREVQVPIL--PACK-HYEDR 203
           PD     +           GWG   E          P  ++ V +P++  P CK     R
Sbjct: 121 PDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIR 180
Query: 204 IAD-VICAGMP--QGGR-DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGV 259
           I D + CAG    +G R D C+GDSGGP +   P    RWY  G+VS GEGC R  + G 
Sbjct: 181 ITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSP-YNNRWYQMGIVSWGEGCDRDGKYGF 239
Query: 260 YTRVSQFVPWLMSNSER 276
           YT V +   W+    +R
Sbjct: 240 YTHVFRLKKWIQKVIDR 256

>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii From The Beetle Holotrichia Diomphalia Length = 394

Iteration: 1
 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 29/247 (11%)
Query: 50  KKAELGAWPWLIALYRDGF--------FHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
            +AE G +PW++A+ +             CGG ++  S V+T AHCV+ ++ +   +   
Sbjct: 135 NEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQSNLDAIKIR 194
Query: 102 MLRRFSFSPTE----QVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD 157
                + +  E    Q R + ++++HS F    + ND+ALL L  PL     +  ICLP 
Sbjct: 195 AGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQ 254
Query: 158 VTETPEPYSTCTAVGWGAVFEHGPD---PDHMREVQVPILPACKHYED----RIA----- 205
            ++  +  + C A GWG   E G      + ++++Q+P +   K   D    R+      
Sbjct: 255 QSQIFDS-TECFASGWGKK-EFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVL 312
Query: 206 --DVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRV 263
               +CAG  QG +DTC GD G PL CP P +  R+   G+V+ G GC   N PGVY  V
Sbjct: 313 DQTFVCAGGEQG-KDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANV 371
Query: 264 SQFVPWL 270
           + F  W+
Sbjct: 372 AHFRNWI 378

>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor Protease Active Site Selectivity Length = 224

Iteration: 1
 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 111/232 (47%), Gaps = 18/232 (7%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           VVGG +A  G +P+++ L       CGG +  +  V+TAAHCV G   +      G +  
Sbjct: 1   VVGGTRAAQGEFPFMVRLS----MGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
              S   +VR  ++++    F +     D AL++LA P+      +P  L   T T    
Sbjct: 57  LQSSSAVKVRS-TKVLQAPGFTKETYGKDWALIKLAQPIN-----QPT-LKIATTTAYNQ 109
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRIA---DVICAGMPQGGRDTC 220
            T T  GWGA  E G    ++ +  VP +   AC+     I    ++ICAG      DTC
Sbjct: 110 GTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYDTKQEDTC 169
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           QGDSGGP+      +   W   G+VS GEGCAR  + GVYT VS F   + S
Sbjct: 170 QGDSGGPMF--RKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIAS 219

>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor Length = 283

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/247 (32%), Positives = 124/247 (50%), Gaps = 33/247 (13%)
Query: 45  RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDG----------FEKH 94
           R++GG  +  G+ PWL A+Y    F C G ++   WV++AAHC               +H
Sbjct: 35  RIIGGSSSLPGSHPWLAAIYIGDSF-CAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQH 93
Query: 95  YFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAP----LRYNRYV 150
           +F     + + F     E+  P +   ++S+F  ++  +DL L++L          +++V
Sbjct: 94  FFNRTTDVTQTFGI---EKYIPYT---LYSVFNPSD--HDLVLIRLKKKGDRCATRSQFV 145
Query: 151 RPICLPDVTETPEPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKHYEDRIADV 207
           +PICLP+   T      C   GWG + E+       +RE  VP++    C   E   AD+
Sbjct: 146 QPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADI 205
Query: 208 ----ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRV 263
               +CAG      D CQGDSGGPL C      G  Y+ G++S G+GC R ++PGVYTRV
Sbjct: 206 SPNMLCAGYFDCKSDACQGDSGGPLACE---KNGVAYLYGIISWGDGCGRLHKPGVYTRV 262
Query: 264 SQFVPWL 270
           + +V W+
Sbjct: 263 ANYVDWI 269

>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The Venom Of Copperhead Snake Agkistrodon Contortrix Contortrix Length = 231

Iteration: 1
 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 120/234 (51%), Gaps = 22/234 (9%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           V+GG +  +    +L  +Y +G   CGG ++++ WV+TA HC    ++    +Y GM   
Sbjct: 1   VIGGDECNINEHRFLALVYANGSL-CGGTLINQEWVLTARHC----DRGNMRIYLGM-HN 54
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAPLRYNRYVRPICLPDVTETPE 163
                 + +R   +     +  R +     D+ L++L  P+R + ++ P+ LP  +  P 
Sbjct: 55  LKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLP--SNPPS 112
Query: 164 PYSTCTAVGWGAVFEHG---PDPDHMREVQVPILPACKH-YEDRIADVICAGMPQGGRDT 219
             S C  +GWG +       PD  H   + +     C+  Y+   A  +CAG+ +GG+DT
Sbjct: 113 VGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKGLAATTLCAGILEGGKDT 172
Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVS-HGEGCARPNEPGVYTRVSQFVPWLMS 272
           C+GDSGGPL+C      G++   G++S  G  CA+P +PG+YT+V  +  W+ S
Sbjct: 173 CKGDSGGPLIC-----NGQF--QGILSVGGNPCAQPRKPGIYTKVFDYTDWIQS 219

>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2 Length = 328

Iteration: 1
 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 125/244 (51%), Gaps = 24/244 (9%)
Query: 44  GRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHY----FEVY 99
           GR+ GG+KA+ G +PW + +   G     G +L ++WV+TAAH V  +E+ +     ++ 
Sbjct: 85  GRIYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAV--YEQKHDASALDIR 140
Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLP--D 157
            G L+R S   T Q    +  +       A   ND+AL++L   +  N  + PICLP  +
Sbjct: 141 MGTLKRLSPHYT-QAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKE 199
Query: 158 VTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACK---HYE-------DRIADV 207
                      TA GWG + + G    ++  V +PI+   K    YE          A++
Sbjct: 200 AESFMRTDDIGTASGWG-LTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANM 258
Query: 208 ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQF 266
           +CAG+  GG+D+C+GDSGG L+  +     RW+V G+VS G   C    + GVYT+V  +
Sbjct: 259 LCAGLESGGKDSCRGDSGGALVF-LDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINY 317
Query: 267 VPWL 270
           +PW+
Sbjct: 318 IPWI 321

>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1 Length = 261

Iteration: 1
 Score =  114 bits (284), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 123/258 (47%), Gaps = 33/258 (12%)
Query: 46  VVGGKKAELGAWPWLIALYRD------GFFHCGGVVLDESWVMTAAHCV------DGFEK 93
           +V G  AE+G  PW + L+          F CG  ++ + WV+TAAHC+        F +
Sbjct: 1   IVEGSDAEIGMSPWQVMLFAKHRRSPGERFLCGASLISDRWVLTAAHCLLYPPWDKNFTE 60
Query: 94  HYFEVYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVR 151
           +   V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ 
Sbjct: 61  NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIH 120
Query: 152 PICLPDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKH 199
           P+CLPD  ET              GWG + E          P  ++ V +PI+  P CK 
Sbjct: 121 PVCLPD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKD 179
Query: 200 YED-RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARP 254
               RI D + CA   P  G+  D C+GDSGGP +   P +  RWY  G+VS GEGC R 
Sbjct: 180 STRIRITDNMFCAYYKPDEGKRGDACEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGCDRD 238
Query: 255 NEPGVYTRVSQFVPWLMS 272
            + G YT V +   W+  
Sbjct: 239 GKYGFYTHVFRLKKWIQK 256

>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a Length = 259

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 122/254 (48%), Gaps = 29/254 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PDVTETPEPYSTC----TAVGWGAVFEHGP------DPDHMREVQVPIL--PACKHYED- 202
           PD  ET              GWG + E          P  ++ V +PI+  P CK     
Sbjct: 121 PD-RETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI 179
Query: 203 RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPG 258
           RI D + CAG  P  G+  D  +GDSGGP +   P +  RWY  G+VS GEG  R  + G
Sbjct: 180 RITDNMFCAGYKPDEGKRGDAAEGDSGGPFVMKSPFNN-RWYQMGIVSWGEGADRDGKYG 238
Query: 259 VYTRVSQFVPWLMS 272
            YT V +   W+  
Sbjct: 239 FYTHVFRLKKWIQK 252

>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric Non-Inhibitory Antibody Fab40.Deltatrp Length = 257

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 123/246 (50%), Gaps = 33/246 (13%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDG----------FEKHY 95
           ++GG  +  G+ PWL A+Y    F C G ++   WV++AAHC               +H+
Sbjct: 1   IIGGSSSLPGSHPWLAAIYIGDSF-CAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHF 59
Query: 96  FEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAP----LRYNRYVR 151
           F     + + F     E+  P +   ++S+F  ++  +DL L++L          +++V+
Sbjct: 60  FNRTTDVTQTFGI---EKYIPYT---LYSVFNPSD--HDLVLIRLKKKGDRCATRSQFVQ 111
Query: 152 PICLPDVTETPEPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKHYEDRIADV- 207
           PICLP+   T      C   GWG + E+       +RE  VP++    C   E   AD+ 
Sbjct: 112 PICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADIS 171
Query: 208 ---ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
              +CAG      D CQGDSGGPL C      G  Y+ G++S G+GC R ++PGVYTRV+
Sbjct: 172 PNMLCAGYFDCKSDACQGDSGGPLACE---KNGVAYLYGIISWGDGCGRLHKPGVYTRVA 228
Query: 265 QFVPWL 270
            +V W+
Sbjct: 229 NYVDWI 234

>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75 Length = 248

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 123/246 (50%), Gaps = 33/246 (13%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDG----------FEKHY 95
           ++GG  +  G+ PWL A+Y    F C G ++   WV++AAHC               +H+
Sbjct: 1   IIGGSSSLPGSHPWLAAIYIGDSF-CAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHF 59
Query: 96  FEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAP----LRYNRYVR 151
           F     + + F     E+  P +   ++S+F  ++  +DL L++L          +++V+
Sbjct: 60  FNRTTDVTQTFGI---EKYIPYT---LYSVFNPSD--HDLVLIRLKKKGDRCATRSQFVQ 111
Query: 152 PICLPDVTETPEPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKHYEDRIADV- 207
           PICLP+   T      C   GWG + E+       +RE  VP++    C   E   AD+ 
Sbjct: 112 PICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADIS 171
Query: 208 ---ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
              +CAG      D CQGDSGGPL C      G  Y+ G++S G+GC R ++PGVYTRV+
Sbjct: 172 PNMLCAGYFDCKSDACQGDSGGPLACE---KNGVAYLYGIISWGDGCGRLHKPGVYTRVA 228
Query: 265 QFVPWL 270
            +V W+
Sbjct: 229 NYVDWI 234

>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva Plasminogen Activator In Complex With Egr-Cmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 119/254 (46%), Gaps = 33/254 (12%)
Query: 47  VGGKKAELGAWPWLIALYRDGF------FHCGGVVLDESWVMTAAHCVDGFEKHYF---- 96
            GG   ++ + PW  A++          F CGG+++   WV+TAAHC   F++ Y     
Sbjct: 15  TGGLFTDITSHPWQAAIFAQNRRSSGERFLCGGILISSCWVLTAAHC---FQESYLPDQL 71
Query: 97  EVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAP----LRYNRYVRP 152
           +V  G   R      EQ   V + ++H  F      ND+ALLQL +      + +  VR 
Sbjct: 72  KVVLGRTYRVKPGEEEQTFKVKKYIVHKEFDDDTYNNDIALLQLKSDSPQCAQESDSVRA 131
Query: 153 ICLPDVTETPEPYSTCTAVGWGAVFEHGP-DPDHMREVQVPILPACK------HYEDRIA 205
           ICLP+       ++ C   G+G      P   + ++E  V + P+ +        +    
Sbjct: 132 ICLPEANLQLPDWTECELSGYGKHKSSSPFYSEQLKEGHVRLYPSSRCAPKFLFNKTVTN 191
Query: 206 DVICAGMPQGGR------DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGV 259
           +++CAG  + G       D CQGDSGGPL+C    +     + G++S G GC   + PGV
Sbjct: 192 NMLCAGDTRSGEIYPNVHDACQGDSGGPLVCM---NDNHMTLLGIISWGVGCGEKDVPGV 248
Query: 260 YTRVSQFVPWLMSN 273
           YT+V+ ++ W+  N
Sbjct: 249 YTKVTNYLGWIRDN 262

>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine Inhibitor Length = 223

Iteration: 1
 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 19/235 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +V G   +  + P+  ALY  G   CGGV++   WV+TAAHC    +K   +V+ G    
Sbjct: 1   LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHC----KKPNLQVFLGKHNL 56
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                +++   V R V+H  +  A    D+ LL+LA P + +  ++P  LP   +     
Sbjct: 57  RQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQP--LPLERDCSANT 114
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-YEDRIA-DVICAGMPQGGRDTCQ 221
           ++C  +GWG   + G  PD ++   + ++    C+H Y  +I  +++CAG  + G+D+CQ
Sbjct: 115 TSCHILGWGKTAD-GDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQ 173
Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSNSE 275
           GDSGGPL+C   G   R    G+VS G   C    +PGVYT V ++  W+    +
Sbjct: 174 GDSGGPLVC---GDHLR----GLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 221

>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin Length = 222

Iteration: 1
 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 113/232 (48%), Gaps = 20/232 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           VVGG +A  G +P+++ L       CGG +  +  V+TAAHCV G   +      G +  
Sbjct: 1   VVGGTRAAQGEFPFMVRLS----MGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
              S   +VR  ++++    +       D AL++LA P+      +P  L   T T    
Sbjct: 57  LQSSSAVKVRS-TKVLQAPGYN--GTGKDWALIKLAQPIN-----QPT-LKIATTTAYNQ 107
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-YEDRIA--DVICAGMPQGGRDTC 220
            T T  GWGA  E G    ++ +  VP +   AC+  Y + +   + ICAG   GG DTC
Sbjct: 108 GTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGNELVANEEICAGYDTGGVDTC 167
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           QGDSGGP+       +  W   G+VS GEGCAR  + GVYT VS F   + S
Sbjct: 168 QGDSGGPMFRKDNADE--WIQVGIVSWGEGCARKGKYGVYTEVSTFASAIAS 217

>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd] Length = 228

Iteration: 1
 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 24/242 (9%)
Query: 46  VVGGKKAELGAWPWLIALY----RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           ++GG +A+  + P++  L       G   CGG ++ E +V+TAAHC         +V  G
Sbjct: 1   IIGGHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAHCSGS----KIQVTLG 56
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
                     +Q+ PV +I+ H  +    ++ND+ LL+L +  + +  V+P+ LP     
Sbjct: 57  AHNIKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVK 116
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPIL------PACKHYEDRIADVICAGMPQG 215
            +P   C   GWG +   G   D ++EV++ +          K+Y D+ A+ ICAG P+ 
Sbjct: 117 VKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYLKNYFDK-ANEICAGDPKI 175
Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
            R + +GDSGGPL+C       +   AG+VS+G+     + P  +T+VS F+ W+    +
Sbjct: 176 KRASFRGDSGGPLVC-------KKVAAGIVSYGQNDG--STPRAFTKVSTFLSWIKKTMK 226
Query: 276 RA 277
           ++
Sbjct: 227 KS 228

>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin Length = 223

Iteration: 1
 Score =  111 bits (277), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 114/233 (48%), Gaps = 21/233 (9%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           VVGG +A  G +P+++ L       CGG +  +  V+TAAHCV G   +      G +  
Sbjct: 1   VVGGTRAAQGEFPFMVRLS----MGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
              S   +VR  ++++    +       D AL++LA P+      +P  L   T T    
Sbjct: 57  LQSSSAVKVRS-TKVLQAPGYN--GTGKDWALIKLAQPIN-----QPT-LKIATTTAYNQ 107
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-YEDRIA--DVICAGMPQ-GGRDT 219
            T T  GWGA  E G    ++ +  VP +   AC+  Y + +   + ICAG P  GG DT
Sbjct: 108 GTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDT 167
Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           CQGDSGGP+      +   W   G+VS G GCARP  PGVYT VS F   + S
Sbjct: 168 CQGDSGGPMF--RKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIAS 218

>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-2 Length = 403

Iteration: 1
 Score =  110 bits (276), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 125/244 (51%), Gaps = 24/244 (9%)
Query: 44  GRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHY----FEVY 99
           G++ GG+KA+ G +PW + +   G     G +L ++WV+TAAH V  +E+ +     ++ 
Sbjct: 160 GQIYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAV--YEQKHDASALDIR 215
Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLP--D 157
            G L+R S   T Q    +  +       A   ND+AL++L   +  N  + PICLP  +
Sbjct: 216 MGTLKRLSPHYT-QAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKE 274
Query: 158 VTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACK---HYE-------DRIADV 207
                      TA GWG + + G    ++  V +PI+   K    YE          A++
Sbjct: 275 AESFMRTDDIGTASGWG-LTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANM 333
Query: 208 ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQF 266
           +CAG+  GG+D+C+GDSGG L+  +     RW+V G+VS G   C    + GVYT+V  +
Sbjct: 334 LCAGLESGGKDSCRGDSGGALVF-LDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINY 392
Query: 267 VPWL 270
           +PW+
Sbjct: 393 IPWI 396

>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific Inhibitor Developed By Directed Evolution On Sgci Scaffold Length = 242

Iteration: 1
 Score =  110 bits (276), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 123/242 (50%), Gaps = 24/242 (9%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHY----FEVYAG 101
           + GG+KA+ G +PW + +   G     G +L ++WV+TAAH V  +E+ +     ++  G
Sbjct: 1   IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAV--YEQKHDASALDIRMG 56
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLP--DVT 159
            L+R S   T Q    +  +       A   ND+AL++L   +  N  + PICLP  +  
Sbjct: 57  TLKRLSPHYT-QAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAE 115
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACK---HYE-------DRIADVIC 209
                    TA GWG + + G    ++  V +PI+   K    YE          A+++C
Sbjct: 116 SFMRTDDIGTASGWG-LTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLC 174
Query: 210 AGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVP 268
           AG+  GG+D+C+GDSGG L+  +     RW+V G+VS G   C    + GVYT+V  ++P
Sbjct: 175 AGLESGGKDSCRGDSGGALVF-LDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIP 233
Query: 269 WL 270
           W+
Sbjct: 234 WI 235

>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component A From Eisenia Fetida Length = 241

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 111/242 (45%), Gaps = 14/242 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDG---FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           V+GG  A  G +PW ++  R        CG  +L  +  ++A+HCVDG   +   V AG+
Sbjct: 1   VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGL 60
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFK--RAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE 160
            ++   S T Q   V    MH  +    A  +ND+A+L LA  +     ++   LP    
Sbjct: 61  WQQSDTSGT-QTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNN 119
Query: 161 TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIA--------DVICAGM 212
                +TC   GWG        PD +++  +P++   +     +         + IC   
Sbjct: 120 NDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQD 179
Query: 213 PQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           P G    C GDSGGPL CP  G++     + VVS G G   P+ P VYTRVS ++ W+  
Sbjct: 180 PAGNTGACNGDSGGPLNCPDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGD 239
Query: 273 NS 274
           NS
Sbjct: 240 NS 241

>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2 Length = 242

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 123/242 (50%), Gaps = 24/242 (9%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHY----FEVYAG 101
           + GG+KA+ G +PW + +   G     G +L ++WV+TAAH V  +E+ +     ++  G
Sbjct: 1   IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAV--YEQKHDASALDIRMG 56
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLP--DVT 159
            L+R S   T Q    +  +       A   ND+AL++L   +  N  + PICLP  +  
Sbjct: 57  TLKRLSPHYT-QAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAE 115
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACK---HYE-------DRIADVIC 209
                    TA GWG + + G    ++  V +PI+   K    YE          A+++C
Sbjct: 116 SFMRTDDIGTASGWG-LTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLC 174
Query: 210 AGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVP 268
           AG+  GG+D+C+GD+GG L+  +     RW+V G+VS G   C    + GVYT+V  ++P
Sbjct: 175 AGLESGGKDSCRGDAGGALVF-LDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIP 233
Query: 269 WL 270
           W+
Sbjct: 234 WI 235

>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin At 1.7 Angstroms Resolution Length = 223

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 113/233 (48%), Gaps = 21/233 (9%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           VVGG +A  G +P+++ L       CGG +  +  V+TAAHCV G   +      G +  
Sbjct: 1   VVGGTRAAQGEFPFMVRLS----MGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                  +VR  ++++    +       D AL++LA P+      +P  L   T T    
Sbjct: 57  LQSGAAVKVRS-TKVLQAPGYN--GTGKDWALIKLAQPIN-----QPT-LKIATTTAYNQ 107
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-YEDRIA--DVICAGMPQ-GGRDT 219
            T T  GWGA  E G    ++ +  VP +   AC+  Y + +   + ICAG P  GG DT
Sbjct: 108 GTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDT 167
Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           CQGDSGGP+      +   W   G+VS G GCARP  PGVYT VS F   + S
Sbjct: 168 CQGDSGGPMF--RKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIAS 218

>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M Proneurosin Length = 223

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 19/236 (8%)
Query: 45  RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           ++V G   +  + P+  ALY  G   CGGV++   WV+TAAHC    +K   +V+ G   
Sbjct: 1   KLVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHC----KKPNLQVFLGKHN 56
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
                 +++   V R V+H  +  A    D+ LL+LA P + +  ++P  LP   +    
Sbjct: 57  LRQQESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQP--LPLERDCSAQ 114
Query: 165 YSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-YEDRIA-DVICAGMPQGGRDTC 220
            ++C  +GWG   + G  PD ++   + ++    C+H Y  +I  +++CAG  + G+D+C
Sbjct: 115 TTSCHILGWGKTAD-GDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSC 173
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSNSE 275
           QGDSGGPL+C   G   R    G+VS G   C    +PGVYT V ++  W+    +
Sbjct: 174 QGDSGGPLVC---GDHLR----GLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 222

>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The Molecular Determinants Of Substrate Specificity Length = 234

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 111/237 (46%), Gaps = 21/237 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG +    + P+++ L  D    C G ++ + WV+TAAHC     K   +V  G    
Sbjct: 1   IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHC--NLNKRS-QVILGAHSI 57
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               PT+Q+  V +   +  +  A    DL LLQL    + N+YV  + LP   +  +P 
Sbjct: 58  TREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPG 117
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPIL--PAC---KHYEDRIA---DVICAGMPQGGR 217
           + C   GWG         D +REV++ I+    C    HY        +++CAG  +GGR
Sbjct: 118 TMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGR 177
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG--EGCARPNEPGVYTRVS-QFVPWLM 271
           D+C GDSG PLLC            GV S G    C  P  PGVY  +S + + W++
Sbjct: 178 DSCNGDSGSPLLC-------EGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWII 227

>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A Length = 234

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 110/237 (46%), Gaps = 21/237 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG +    + P+++ L  D    C G ++ + WV+TAAHC     K   +V  G    
Sbjct: 1   IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHC--NLNKRS-QVILGAHSI 57
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               PT+Q+  V +   +  +  A    DL LLQL    + N+YV  + LP   +  +P 
Sbjct: 58  TREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPG 117
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPIL--PAC---KHYEDRIA---DVICAGMPQGGR 217
           + C   GWG         D +REV + I+    C    HY        +++CAG  +GGR
Sbjct: 118 TMCQVAGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGR 177
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG--EGCARPNEPGVYTRVS-QFVPWLM 271
           D+C GDSG PLLC            GV S G    C  P  PGVY  +S + + W++
Sbjct: 178 DSCNGDSGSPLLC-------EGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWII 227

>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To Inhibitor Eglin C From Hirudo Medicinalis Length = 249

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 14/236 (5%)
Query: 46  VVGGKKAELGAWPWLIALY---RDGFFH-CGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           VVGG+ A   +WPW I+L     D + H CGG ++  ++V+TAAHC+     +   V   
Sbjct: 1   VVGGEDARPHSWPWQISLQYLKNDTWRHTCGGTLIASNFVLTAAHCISNTRTYRVAVGKN 60
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
            L       +  V  V  I +H  +    + ND+AL++LA  +  +  ++  CLP+    
Sbjct: 61  NLEVEDEEGSLFV-GVDTIHVHKRWNALLLRNDIALIKLAEHVELSDTIQVACLPEKDSL 119
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPIL--PACKHYE---DRIADVICAGMPQGG 216
                 C   GWG ++ +GP  D +++   P++    C   +    R+   +      G 
Sbjct: 120 LPKDYPCYVTGWGRLWTNGPIADKLQQGLQPVVDHATCSRIDWWGFRVKKTMVCAGGDGV 179
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWL 270
              C GDSGGPL C +    G W V G+VS G   GC    +P VYTRVS ++ W+
Sbjct: 180 ISACNGDSGGPLNCQL--ENGSWEVFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWI 233

>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A Para-Amidobenzylanmine P1 Group Carry A High Binding Efficiency Length = 223

Iteration: 1
 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 19/235 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +V G   +  + P+  ALY  G   CGGV++   WV+TAAHC    +K   +V+ G    
Sbjct: 1   LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHC----KKPNLQVFLGKHNL 56
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                +++   V R V+H  +  A    D+ LL+LA P + +  ++P  LP   +     
Sbjct: 57  GQQESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQP--LPLERDCSAQT 114
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-YEDRIA-DVICAGMPQGGRDTCQ 221
           ++C  +GWG   + G  PD ++   + ++    C+H Y  +I  +++CAG  + G+D+CQ
Sbjct: 115 TSCHILGWGKTAD-GDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQ 173
Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSNSE 275
           GDSGGPL+C   G   R    G+VS G   C    +PGVYT V ++  W+    +
Sbjct: 174 GDSGGPLVC---GDHLR----GLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ 221

>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With Benzamidine Length = 223

Iteration: 1
 Score =  108 bits (269), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 113/233 (48%), Gaps = 21/233 (9%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           VVGG +A  G +P+++ L       CGG +  +  V+TAAHCV G   +      G +  
Sbjct: 1   VVGGTRAAQGEFPFMVRLS----MGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
              S   +VR  ++++    +       D AL++LA P+      +P  L   T T    
Sbjct: 57  LQSSSAVKVRS-TKVLQAPGYN--GTGKDWALIKLAQPIN-----QPT-LKIATTTAYNQ 107
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-YEDRIA--DVICAGMPQ-GGRDT 219
            T T  GWGA  E G    ++ +  VP +   AC+  Y + +   + ICAG P  GG D 
Sbjct: 108 GTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDP 167
Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           CQGDSGGP+      +   W   G+VS G GCARP  PGVYT VS F   + S
Sbjct: 168 CQGDSGGPMF--RKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIAS 218

>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K Length = 240

Iteration: 1
 Score =  108 bits (269), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 119/240 (49%), Gaps = 19/240 (7%)
Query: 45  RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGML 103
            ++GGK+    + P++ ++   G   CGGV++D  WV+TAAHC   F K     V  G  
Sbjct: 2   EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAH 61
Query: 104 RRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE 163
                  ++Q   + + +  S       +ND+ L++L    + N++V+ + +   T    
Sbjct: 62  SLSKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSL-R 120
Query: 164 PYSTCTAVGWGAVFEHGPDP-DHMREVQVPILP-----ACKHYEDR---IADVICAGMPQ 214
             + C   GWGA       P D +REV V +L      +  +Y        D++CAG  +
Sbjct: 121 SGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAK 180
Query: 215 GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS-QFVPWLMSN 273
           G +D+C+GD+GGPL+C     +G ++   +VS G  C    +PG+YT ++ ++  W+ SN
Sbjct: 181 GQKDSCKGDAGGPLIC-----KGVFH--AIVSGGHECGVATKPGIYTLLTKKYQTWIKSN 233

>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom Length = 234

Iteration: 1
 Score =  107 bits (267), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 114/235 (48%), Gaps = 21/235 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           V GG +  +     L+ L+    F CGG ++++ WV+TAAHC    + + F++  G+  +
Sbjct: 1   VFGGDECNINEHRSLVVLFNSNGFLCGGTLINQDWVVTAAHC----DSNNFQLLFGVHSK 56
Query: 106 FSFSPTEQVR-PVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
              +  EQ R P  +    +  K  E+  D+ L++L + +  + ++ P  L   +  P  
Sbjct: 57  KILNEDEQTRDPKEKFFCPNRKKDDEVDKDIMLIKLDSSVSNSEHIAP--LSLPSSPPSV 114
Query: 165 YSTCTAVGWGAVF---EHGPDPDHMREVQVPILPACK---HYEDRIADVICAGMPQGGRD 218
            S C  +GWG      E  PD  H   + +     C+    +       +CAG+ QGGRD
Sbjct: 115 GSVCRIMGWGKTIPTKEIYPDVPHCANINILDHAVCRTAYSWRQVANTTLCAGILQGGRD 174
Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVS-HGEGCARPNEPGVYTRVSQFVPWLMS 272
           TC  DSGGPL+C            G+VS  G  C +P EPGVYT+V  ++ W+ S
Sbjct: 175 TCHFDSGGPLIC-------NGIFQGIVSWGGHPCGQPGEPGVYTKVFDYLDWIKS 222

>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6 Subunit Iii, A Highly Structured Truncated Zymogen E Length = 240

Iteration: 1
 Score =  107 bits (267), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 117/238 (49%), Gaps = 22/238 (9%)
Query: 49  GKKAELGAWPWLIALY--RDGFFH--CGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           G+ A   +W W ++L   +DG FH  CGG ++   WV+TA HC+       ++V  G   
Sbjct: 2   GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIS--TSRTYQVVLGEYD 59
Query: 105 RFSFSPTEQVRPVS--RIVMHSMFKRAEMT--NDLALLQLAAPLRYNRYVRPICLPDVTE 160
           R     +EQV P++   + +H ++    +   ND+AL++L+   +    V+   LP   +
Sbjct: 60  RSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGD 119
Query: 161 TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKHYE----DRIADVICAGMPQ 214
                + C   GWG ++  GP PD +++  +P +    C  ++         ++CAG   
Sbjct: 120 ILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAGGDT 179
Query: 215 GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVS--HGEGCARPNEPGVYTRVSQFVPWL 270
             R  C GDSGGPL C  P + G W V GV S     GC    +P V+TRVS F+ W+
Sbjct: 180 --RSGCNGDSGGPLNC--PAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWI 233

>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score =  107 bits (267), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 123/236 (52%), Gaps = 21/236 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           V+GG + ++    +L+A +    F CGG +++  WV+TAAHC    +   F++  G+  +
Sbjct: 1   VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHC----DSTNFQMQLGVHSK 56
Query: 106 FSFSPTEQVR-PVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
              +  EQ R P  + +  +      +  D+ L++L  P+  ++++ P  L   +  P  
Sbjct: 57  KVLNEDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAP--LSLPSSPPSV 114
Query: 165 YSTCTAVGWGA---VFEHGPDPDHMREVQVPILPACKH-YEDRIAD--VICAGMPQGGRD 218
            S C  +GWG+   V E  PD  +   + +     C+  Y + +A+   +CAG+ QGG+D
Sbjct: 115 GSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAEYRTLCAGIVQGGKD 174
Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMSN 273
           TC GDSGGPL+C      G++   G+VS+G   C +  +PG+YT V  +  W+  N
Sbjct: 175 TCGGDSGGPLIC-----NGQF--QGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRN 223

>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With Leupeptin Length = 227

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 114/240 (47%), Gaps = 26/240 (10%)
Query: 46  VVGGKKAELGAWPWLIALY-RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           ++ G   ++   PW  AL  R    +CG V++   W++TAAHC     K  F V  G   
Sbjct: 1   IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHC----RKKVFRVRLG--- 53
Query: 105 RFSFSPT----EQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE 160
            +S SP     +Q+    + + H  +     +NDL L++L   +R  + VRPI +   + 
Sbjct: 54  HYSLSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVS--SH 111
Query: 161 TPEPYSTCTAVGWGAVFE---HGPDPDHMREVQVPILPACKH-YEDRIADVICAGMPQGG 216
            P   + C   GWG       H P       + V     C+  Y  +I D +     + G
Sbjct: 112 CPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFCAGDKAG 171
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSNSE 275
           RD+CQGDSGGP++C   GS     + G+VS G+  CARPN PGVYT + +F  W+    +
Sbjct: 172 RDSCQGDSGGPVVC--NGS-----LQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQ 224

>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 123/236 (52%), Gaps = 21/236 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           V+GG + ++    +L+A +    F CGG +++  WV+TAAHC    +   F++  G+  +
Sbjct: 1   VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHC----DSTDFQMQLGVHSK 56
Query: 106 FSFSPTEQVR-PVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
              +  EQ R P  + +  +      +  D+ L++L  P+  ++++ P  L   +  P  
Sbjct: 57  KVLNEDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAP--LSLPSSPPSV 114
Query: 165 YSTCTAVGWGA---VFEHGPDPDHMREVQVPILPACKH-YEDRIAD--VICAGMPQGGRD 218
            S C  +GWG+   V E  PD  +   + +     C+  Y + +A+   +CAG+ QGG+D
Sbjct: 115 GSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAEYRTLCAGIVQGGKD 174
Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPWLMSN 273
           TC GDSGGPL+C      G++   G+VS+G   C +  +PG+YT V  +  W+  N
Sbjct: 175 TCGGDSGGPLIC-----NGQF--QGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRN 223

>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Closed-Form) Length = 234

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 25/237 (10%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGML 103
           VVGG +  +   P+L+ALY       HC G +++  WV+TAAHC    ++    +  GM 
Sbjct: 1   VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHC----DRRNIRIKLGMH 56
Query: 104 RRFSFSPTEQVRPVSR---IVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE 160
            +   +  EQ+R V R     +++ F    +  D+ L++L  P+ Y+ ++ P+ LP  + 
Sbjct: 57  SKNIRNEDEQIR-VPRGKYFCLNTKFPNG-LDKDIMLIRLRRPVTYSTHIAPVSLP--SR 112
Query: 161 TPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPILPACKHYEDRI---ADVICAGMPQGG 216
           +    S C  +GWG +     PD  H   + +     C+     +   +  +CAG+ +GG
Sbjct: 113 SRGVGSRCRIMGWGKISTTTYPDVPHCTNIFIVKHKWCEPLYPWVPADSRTLCAGILKGG 172
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPWLMS 272
           RDTC GDSGGPL+C      G  +  G+V+ G E C +  +P VYT+V  +  W+ S
Sbjct: 173 RDTCHGDSGGPLIC-----NGEMH--GIVAGGSEPCGQHLKPAVYTKVFDYNNWIQS 222

>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure Length = 227

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 113/240 (47%), Gaps = 20/240 (8%)
Query: 46  VVGGKKAELGAWPWL--IALYRDGFFH-CGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           ++GG +A+  + P++  +     G  H CGG ++ E +V+TAAHC+         V  G 
Sbjct: 1   IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGS----SINVTLGA 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
                   T+QV PV R + H  +    + ND+ LL+L         V PI LP      
Sbjct: 57  HNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEV 116
Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACK---HYEDRIA-DVICAGMPQGGRD 218
           +P   C+  GWG +  + P  D ++EV + +    K    +++ I    ICAG P   ++
Sbjct: 117 KPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNYIPFTQICAGDPSKRKN 176
Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERAK 278
           +  GDSGGPL+C            G+VS+G        P VYTR+S F+ W+ S   R K
Sbjct: 177 SFSGDSGGPLVC-------NGVAQGIVSYGRNDG--TTPDVYTRISSFLSWIHSTMRRYK 227

>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B Length = 227

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 111/240 (46%), Gaps = 23/240 (9%)
Query: 46  VVGGKKAELGAWPWLIALY---RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           ++GG +A+  + P++  L    +     CGG ++ + +V+TAAHC          V  G 
Sbjct: 1   IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIQDDFVLTAAHCWGS----SINVTLGA 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
                  PT+Q  PV R + H  +     +ND+ LLQL    +  R V+P+ LP      
Sbjct: 57  HNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQV 116
Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACK------HYEDRIADVICAGMPQGG 216
           +P  TC+  GWG     G     ++EV++ +    K      HY D   + +C G P+  
Sbjct: 117 KPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIE-LCVGDPEIK 175
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER 276
           + + +GDSGGPL+C            G+VS+G     P  P   T+VS FV W+    +R
Sbjct: 176 KTSFKGDSGGPLVC-------NKVAQGIVSYGRNNGMP--PRACTKVSSFVHWIKKTMKR 226

>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho Length = 227

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 111/240 (46%), Gaps = 23/240 (9%)
Query: 46  VVGGKKAELGAWPWLIALY---RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           ++GG +A+  + P++  L    +     CGG ++ + +V+TAAHC          V  G 
Sbjct: 1   IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCWGS----SINVTLGA 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
                  PT+Q  PV R + H  +     +ND+ LLQL    +  R V+P+ LP      
Sbjct: 57  HNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQV 116
Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACK------HYEDRIADVICAGMPQGG 216
           +P  TC+  GWG     G     ++EV++ +    K      HY D   + +C G P+  
Sbjct: 117 KPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIE-LCVGDPEIK 175
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER 276
           + + +GDSGGPL+C            G+VS+G     P  P   T+VS FV W+    +R
Sbjct: 176 KTSFKGDSGGPLVC-------NKVAQGIVSYGRNNGMP--PRACTKVSSFVHWIKKTMKR 226

>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 251

Iteration: 1
 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 19/241 (7%)
Query: 43  SGRVVGGKKAELGAWPWLIAL--YRDGFFH--CGGVVLDESWVMTAAHCVDGFEKHYFEV 98
           S RVVGG+ A   +WPW I+L   RD  +   CGG ++  + V+TAAHC+     +   +
Sbjct: 11  SARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISNTLTYRVAL 70
Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLP-D 157
               L     + +  V  V  I +H  +    + ND+AL++LA  +     ++  CLP +
Sbjct: 71  GKNNLEVEDEAGSLYV-GVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSE 129
Query: 158 VTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPIL--PACKHYE----DRIADVICAG 211
            +  P+ Y  C   GWG ++ +GP    +++   P++    C   +         ++CAG
Sbjct: 130 GSLLPQDYP-CFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAG 188
Query: 212 MPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG--CARPNEPGVYTRVSQFVPW 269
              G    C GDSGGPL C    + G+W V G+VS G G  C    +P V+TRVS ++ W
Sbjct: 189 -GDGVISACNGDSGGPLNCQ---ADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDW 244
Query: 270 L 270
           +
Sbjct: 245 I 245

>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component B: A Novel, Glycosylated Two-chained Trypsin Length = 238

Iteration: 1
 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 115/236 (48%), Gaps = 16/236 (6%)
Query: 46  VVGGKKAELGAWPWLIALYR---DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG +A    +PW +++ R   D  F CGG ++++ WV+ AAHC+ G       +  G 
Sbjct: 1   IVGGIEARPYEFPWQVSVRRKSSDSHF-CGGSIINDRWVVCAAHCMQGEAPALVSLVVGE 59
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
               + S   Q   V  I ++  +  A + ND+++++ A  + ++  V PIC PD     
Sbjct: 60  HDSSAASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPD-PAND 118
Query: 163 EPYSTCTAVGWGAVFEHGP-DPDHMREVQVPILPA--CK--HYEDRI-ADVICAGMPQG- 215
             Y      GWG +   G   P  +R V + I     C   +  D I  D+ICA    G 
Sbjct: 119 YVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDTIYDDMICATDNTGM 178
Query: 216 -GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             RD+CQGDSGGPL   V    G + + G+VS G GCA    PGVY+RV     W+
Sbjct: 179 TDRDSCQGDSGGPL--SVKDGSGIFSLVGIVSWGIGCAS-GYPGVYSRVGFHAGWI 231

>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic System Of Mouse Brain Length = 225

Iteration: 1
 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 23/234 (9%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++ G++    + PW  AL++     CGGV++ + WV+TAAHC    +K  + V  G    
Sbjct: 1   ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHC----KKQKYSVRLGDHSL 56
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRA---EMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
            S    EQ   V++ + H  +  +   + ++D+ L++L         V+P+ L ++   P
Sbjct: 57  QSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANL--CP 114
Query: 163 EPYSTCTAVGWGAVF---EHGPDPDHMREVQVPILPACKH-YEDRIAD-VICAGMPQGGR 217
           +    C   GWG V    E+ P+  +  EV++     C+  Y  +I + ++CAG   G  
Sbjct: 115 KVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITEGMVCAGSSNGA- 173
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWL 270
           DTCQGDSGGPL+C          + G+ S G   C +P +PGVYT++ ++  W+
Sbjct: 174 DTCQGDSGGPLVC-------DGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWI 220

>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of Complement Protease C1r Length = 329

Iteration: 1
 Score =  104 bits (259), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 127/255 (49%), Gaps = 25/255 (9%)
Query: 38  NPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFE 97
           NP+    R++GG+KA++G +PW +     G    GG +L + W++TAAH +   E H  +
Sbjct: 82  NPVEQRQRIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPKE-HEAQ 138
Query: 98  VYAGMLRRFSFSPTEQV-----RPVSRIVMHSMFKRAEMTN---DLALLQLAAPLRYNRY 149
             A +      +  E++      P+ R+ +H  +++ E  N   D+ALL+L   +     
Sbjct: 139 SNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPN 198
Query: 150 VRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPIL--PACKHY---EDRI 204
           + PICLPD  +T         V    V E     D +R V++P+    AC+++   ++R+
Sbjct: 199 LLPICLPD-NDTFYDLGLMGYVSGFGVMEEKIAHD-LRFVRLPVANPQACENWLRGKNRM 256
Query: 205 ----ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVY 260
                ++ CAG P   +D CQGDSGG      P +  RW   G+VS G GC+R    G Y
Sbjct: 257 DVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTD-RWVATGIVSWGIGCSRGY--GFY 313
Query: 261 TRVSQFVPWLMSNSE 275
           T+V  +V W+    E
Sbjct: 314 TKVLNYVDWIKKEME 328

>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen Complexed With An Activating Antibody Length = 237

Iteration: 1
 Score =  103 bits (258), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 116/242 (47%), Gaps = 30/242 (12%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG + E  + PW + +   G   CGGV++   WV+TAAHC+    ++   +  G    
Sbjct: 1   IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCI----RNKSVILLGRHSL 56
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTN-----------DLALLQLAAPLRYNRYVRPIC 154
           F    T QV  VS    H ++  + + N           DL LL+L+ P      V+ + 
Sbjct: 57  FHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMD 116
Query: 155 LPDVTETPEPYSTCTAVGWGAVF-EHGPDPDHMREVQVPILP----ACKHYEDRIADVIC 209
           LP  T+ P   +TC A GWG++  E    P  ++ V + ++     A  H +     ++C
Sbjct: 117 LP--TQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQKVTKFMLC 174
Query: 210 AGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVP 268
           AG   GG+ TC GDSGGPL+C          + G+ S G E CA P  P +YT+V  +  
Sbjct: 175 AGRWTGGKSTCSGDSGGPLVC-------NGVLQGITSWGSEPCALPERPSLYTKVVHYRK 227
Query: 269 WL 270
           W+
Sbjct: 228 WI 229

>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease C1r Length = 328

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 127/255 (49%), Gaps = 25/255 (9%)
Query: 38  NPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFE 97
           NP+    R++GG+KA++G +PW +     G    GG +L + W++TAAH +   E H  +
Sbjct: 82  NPVEQRQRIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPKE-HEAQ 138
Query: 98  VYAGMLRRFSFSPTEQV-----RPVSRIVMHSMFKRAEMTN---DLALLQLAAPLRYNRY 149
             A +      +  E++      P+ R+ +H  +++ E  N   D+ALL+L   +     
Sbjct: 139 SNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPN 198
Query: 150 VRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPIL--PACKHY---EDRI 204
           + PICLPD  +T         V    V E     D +R V++P+    AC+++   ++R+
Sbjct: 199 LLPICLPD-NDTFYDLGLMGYVSGFGVMEEKIAHD-LRFVRLPVANPQACENWLRGKNRM 256
Query: 205 ----ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVY 260
                ++ CAG P   +D CQGD+GG      P +  RW   G+VS G GC+R    G Y
Sbjct: 257 DVFSQNMFCAGHPSLKQDACQGDAGGVFAVRDPNTD-RWVATGIVSWGIGCSRGY--GFY 313
Query: 261 TRVSQFVPWLMSNSE 275
           T+V  +V W+    E
Sbjct: 314 TKVLNYVDWIKKEME 328

>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H Length = 226

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 22/239 (9%)
Query: 46  VVGGKKAELGAWPWLIA---LYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           ++GG +A+  + P++     L       CGG+++ + +V+TAAHC    +     V  G 
Sbjct: 1   IIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHC----QGSSINVTLGA 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
                   T+Q  PV R + H  +     +ND+ LLQL    ++   VRP+ LP      
Sbjct: 57  HNIKEQERTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKWTTAVRPLRLPSSKAQV 116
Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACK-----HYEDRIADVICAGMPQGGR 217
           +P   C+  GWG V         ++EV + +   C+     H     A  IC G P+  +
Sbjct: 117 KPGQLCSVAGWGYV-SMSTLATTLQEVLLTVQKDCQCERLFHGNYSRATEICVGDPKKTQ 175
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER 276
              +GDSGGPL+C       +    G++S+G     P  PGVY +VS F+PW+    +R
Sbjct: 176 TGFKGDSGGPLVC-------KDVAQGILSYGNKKGTP--PGVYIKVSHFLPWIKRTMKR 225

>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Complement C1s Protease Length = 333

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 122/263 (46%), Gaps = 37/263 (14%)
Query: 39  PILGSGRVVGGKKAELGAWPWLIALYRDGFFH---CGGVVLDESWVMTAAHCVDGFEKHY 95
           P     R++GG  A++  +PW +      FF     GG +++E WV+TAAH V+G  +  
Sbjct: 76  PFEEKQRIIGGSDADIKNFPWQV------FFDNPWAGGALINEYWVLTAAHVVEGNREPT 129
Query: 96  FEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFK-------RAEMTNDLALLQLAAPLRYNR 148
             V +  ++    + ++ + P   + +H  +K       R    ND+AL++L  P++   
Sbjct: 130 MYVGSTSVQTSRLAKSKMLTP-EHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGP 188
Query: 149 YVRPICLPDVTETPEPYSTCTAV--GWGAVFEHGPDPDHMREVQVPILPACKHYEDRIA- 205
            V PICLP  +           +  GWG   E       ++  ++P+ P  K  E ++  
Sbjct: 189 TVSPICLPGTSSDYNLMDGDLGLISGWGRT-EKRDRAVRLKAARLPVAPLRKCKEVKVEK 247
Query: 206 ------------DVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCAR 253
                       ++ICAG  + G D+C+GDSGG      P  + ++Y AG+VS G  C  
Sbjct: 248 PTADAEAYVFTPNMICAGG-EKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGT 306
Query: 254 PNEPGVYTRVSQFVPWLMSNSER 276
               G+YTRV  +V W+M   + 
Sbjct: 307 ---YGLYTRVKNYVDWIMKTMQE 326

>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of Complement Protease C1r Length = 399

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 127/255 (49%), Gaps = 25/255 (9%)
Query: 38  NPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFE 97
           NP+    +++GG+KA++G +PW +     G    GG +L + W++TAAH +   E H  +
Sbjct: 150 NPVEQRQQIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPKE-HEAQ 206
Query: 98  VYAGMLRRFSFSPTEQV-----RPVSRIVMHSMFKRAEMTN---DLALLQLAAPLRYNRY 149
             A +      +  E++      P+ R+ +H  +++ E  N   D+ALL+L   +     
Sbjct: 207 SNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPN 266
Query: 150 VRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPIL--PACKHY---EDRI 204
           + PICLPD  +T         V    V E     D +R V++P+    AC+++   ++R+
Sbjct: 267 LLPICLPD-NDTFYDLGLMGYVSGFGVMEEKIAHD-LRFVRLPVANPQACENWLRGKNRM 324
Query: 205 ----ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVY 260
                ++ CAG P   +D CQGDSGG      P +  RW   G+VS G GC+R    G Y
Sbjct: 325 DVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTD-RWVATGIVSWGIGCSRGY--GFY 381
Query: 261 TRVSQFVPWLMSNSE 275
           T+V  +V W+    E
Sbjct: 382 TKVLNYVDWIKKEME 396

>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor Length = 226

Iteration: 1
 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 22/239 (9%)
Query: 46  VVGGKKAELGAWPWLIA---LYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           ++GG +A+  + P++     L       CGG+++ + +V+TAAHC    +     V  G 
Sbjct: 1   IIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHC----QGSSINVTLGA 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
                   T+Q  PV R + H  +     +N++ LLQL    ++   VRP+ LP      
Sbjct: 57  HNIKEQERTQQFIPVKRPIPHPAYNPKNFSNNIMLLQLERKAKWTTAVRPLRLPSSKAQV 116
Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACK-----HYEDRIADVICAGMPQGGR 217
           +P   C+  GWG V         ++EV + +   C+     H     A  IC G P+  +
Sbjct: 117 KPGQLCSVAGWGYV-SMSTLATTLQEVLLTVQKDCQCERLFHGNYSRATEICVGDPKKTQ 175
Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER 276
              +GDSGGPL+C       +    G++S+G     P  PGVY +VS F+PW+    +R
Sbjct: 176 TGFKGDSGGPLVC-------KDVAQGILSYGNKKGTP--PGVYIKVSHFLPWIKRTMKR 225

>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r Reveals Enzyme-product Like Contacts Length = 242

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 123/248 (49%), Gaps = 25/248 (10%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG+KA++G +PW +     G    GG +L + W++TAAH +   E H  +  A +   
Sbjct: 1   IIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPKE-HEAQSNASLDVF 57
Query: 106 FSFSPTEQV-----RPVSRIVMHSMFKRAEMTN---DLALLQLAAPLRYNRYVRPICLPD 157
              +  E++      P+ R+ +H  +++ E  N   D+ALL+L   +     + PICLPD
Sbjct: 58  LGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPD 117
Query: 158 VTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPIL--PACKHY---EDRI----ADVI 208
             +T         V    V E     D +R V++P+    AC+++   ++R+     ++ 
Sbjct: 118 -NDTFYDLGLMGYVSGFGVMEEKIAHD-LRFVRLPVANPQACENWLRGKNRMDVFSQNMF 175
Query: 209 CAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVP 268
           CAG P   +D CQGDSGG      P +  RW   G+VS G GC+R    G YT+V  +V 
Sbjct: 176 CAGHPSLKQDACQGDSGGVFAVRDPNTD-RWVATGIVSWGIGCSRG--YGFYTKVLNYVD 232
Query: 269 WLMSNSER 276
           W+    E 
Sbjct: 233 WIKKEMEE 240

>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom Thrombin- Like Enzyme From Agkistrodon Halys Length = 238

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 120/237 (50%), Gaps = 25/237 (10%)
Query: 46  VVGGKKAELGAWPWLIALY--RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGML 103
           ++GG +  +    +L+ALY  R     CGG ++++ WV+TAAHC    ++  F +  GM 
Sbjct: 1   IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHC----DRKNFRIKLGMH 56
Query: 104 RRFSFSPTEQVR-PVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
            +   +  EQ R P  +    S         D+ L++L +P++ ++++ P      +  P
Sbjct: 57  SKKVPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAP--FSLPSSPP 114
Query: 163 EPYSTCTAVGWGAVF-EHGPDPDHMREVQVPIL-------PACKHYEDRIADVICAGMPQ 214
              S C  +GWG +    G  PD    V + +L       P  +      +  +CAG+ +
Sbjct: 115 SVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILE 174
Query: 215 GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWL 270
           GG+DTC+GDSGGPL+C      G++   G+ S G+  CA+P++P  YT+V   + W+
Sbjct: 175 GGKDTCKGDSGGPLIC-----NGQF--QGIASWGDDPCAQPHKPAAYTKVFDHLDWI 224

>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M Length = 240

Iteration: 1
 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 17/243 (6%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG++    + P++ +L R+G   CGGV++   WV+TAAHC+         +  G+   
Sbjct: 1   IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCL-AQRMAQLRLVLGLHTL 59
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRA-EMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
            S   T  ++     + H  +K    + NDLALLQL   ++ +R +RP+ LP   +    
Sbjct: 60  DSPGLTFHIKAA---IQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAA 116
Query: 165 YSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRI------ADVICAGMPQGGRD 218
            + C+  GWG   + G     +RE+ + +L        R         ++C       + 
Sbjct: 117 GTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQA 176
Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMSNSERA 277
            C+GDSGGPL+C     +GR  +AGV+S     C    +P V T V+ +V W+   + R+
Sbjct: 177 PCKGDSGGPLVC----GKGR-VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTGRS 231
Query: 278 KVE 280
            +E
Sbjct: 232 ALE 234

>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin) Length = 221

Iteration: 1
 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 21/234 (8%)
Query: 46  VVGGKKAELGAWPWLIALY---RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG +A+  + P++ +L      G   CGG ++  S+V+TAAHC+    +    V  G 
Sbjct: 1   IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGA 60
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
               +  PT+Q   V+++ +++ +      ND+ L+QL++P   +  V  + LP   + P
Sbjct: 61  HNVRTQEPTQQHFSVAQVFLNN-YDAENKLNDILLIQLSSPANLSASVATVQLPQ-QDQP 118
Query: 163 EPYST-CTAVGWGAVFEHGPDPDHMREVQVPILP-ACKHYEDRIADVICAGMPQGGRDTC 220
            P+ T C A+GWG V  H P    ++E+ V ++   C+ +       IC  +P+     C
Sbjct: 119 VPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHN------ICTFVPRRKAGIC 172
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSN 273
            GDSGGPL+C          + G+ S    GCA    P  +TRV+ +V W+ S 
Sbjct: 173 FGDSGGPLIC-------DGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRST 219

>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal Synthesized Substrate Length = 240

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 118/243 (48%), Gaps = 17/243 (6%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG++    + P++ +L R+G   CGGV++   WV+TAAHC+         +  G+   
Sbjct: 1   IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCL-AQRMAQLRLVLGLHTL 59
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRA-EMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
            S   T  ++     + H  +K    + N+LALLQL   ++ +R +RP+ LP   +    
Sbjct: 60  DSPGLTFHIKAA---IQHPRYKPVPALENNLALLQLDGKVKPSRTIRPLALPSKRQVVAA 116
Query: 165 YSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIAD------VICAGMPQGGRD 218
            + C+  GWG   + G     +RE+ + +L        R  +      ++C       + 
Sbjct: 117 GTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQA 176
Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMSNSERA 277
            C+GDSGGPL+C     +GR  +AGV+S     C    +P V T V+ +V W+   + R+
Sbjct: 177 PCKGDSGGPLVC----GKGR-VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTGRS 231
Query: 278 KVE 280
            +E
Sbjct: 232 ALE 234

>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And P-aminobenzamidine Length = 223

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 106/230 (46%), Gaps = 18/230 (7%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++ G+     + PW  AL  +    C GV++   WV++AAHC   F+  Y          
Sbjct: 1   IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHC---FQNSYTIGLGLHSLE 57
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               P  Q+   S  V H  + R  + NDL L++L   +  +  +R I +   ++ P   
Sbjct: 58  ADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISI--ASQCPTAG 115
Query: 166 STCTAVGWGAVFEHGPDPDHMR--EVQVPILPACKHYEDRIA--DVICAGMPQGGRDTCQ 221
           ++C   GWG +  +G  P  ++   V V     C    D +    + CAG  Q  +D+C 
Sbjct: 116 NSCLVSGWG-LLANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQKDSCN 174
Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWL 270
           GDSGGPL+C         Y+ G+VS G+  C +   PGVYT + +F  W+
Sbjct: 175 GDSGGPLIC-------NGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWI 217

>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal Plasma Length = 237

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 115/248 (46%), Gaps = 30/248 (12%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG + E  + PW +A+Y  G F CGGV++   WV+TAAHC+       ++++ G    
Sbjct: 1   IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMSD----DYQIWLGRHNL 56
Query: 106 FSFSPTEQVRPVSRIVMH-----SMFKRA------EMTNDLALLQLAAPLRYNRYVRPIC 154
                T Q   VS   +      S+ K+       ++++DL LL+LA P R    V+ + 
Sbjct: 57  SKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILD 116
Query: 155 LPDVTETPEPYSTCTAVGWGAV---FEHGPDPDHMREVQVPILPAC-KHYEDRIAD-VIC 209
           LP  T+ P+  STC   GWG +      G       E+++     C + Y +++ + V+C
Sbjct: 117 LP--TQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEKMTEFVLC 174
Query: 210 AGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVP 268
           A         C GDSGG L+C            G+ S G   CA  N+  V+T+V     
Sbjct: 175 ATHRDDSGSICLGDSGGALICDG-------VFQGITSWGYSECADFNDNFVFTKVMPHKK 227
Query: 269 WLMSNSER 276
           W+    E+
Sbjct: 228 WIKETIEK 235

>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin Length = 226

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 107/234 (45%), Gaps = 17/234 (7%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG +A   +WP   AL+ D  + CGG ++   W++TAAHC+DG    + +V  G    
Sbjct: 1   IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDG--AGFVDVVLGAHNI 58
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                T+     +   +H  +    ++ND+A+++L  P+     +  + LP  +      
Sbjct: 59  REDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLP--STDVGVG 116
Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILPA--CKHYEDRIADVICAGMPQGGRDTCQG 222
           +  T  GWG   +      D +R+V VPI+    C      + D        GG+ TC G
Sbjct: 117 TVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIVTDGNICIDSTGGKGTCNG 176
Query: 223 DSGGPLLCPVPGSQGRWYVAGVVSHG--EGCARPNEPGVYTRVSQFVPWLMSNS 274
           DSGGPL        G  Y  G+ S G   GC     P  +TRV+ F+ W+ + +
Sbjct: 177 DSGGPL-----NYNGLTY--GITSFGAAAGC-EAGYPDAFTRVTYFLDWIQTQT 222

>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor Length = 240

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 104/220 (47%), Gaps = 18/220 (8%)
Query: 59  WLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM--LRRFSFSPTEQVRP 116
           W+++L       CGG ++ ESWV+TA  C    +   +E + G+  +        +QV  
Sbjct: 13  WMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLN 72
Query: 117 VSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAV 176
           VS++V           +DL L++LA P   + +V  I LP+   T    ++C+  GWG  
Sbjct: 73  VSQLVY------GPEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYT 126
Query: 177 FEHGPDPDHMREVQVPIL---PACKHYEDRIA---DVICAGMPQGGRDTCQGDSGGPLLC 230
                D   +R   + I+      +H+  ++      ICAG  + G   C+GD GGPL+C
Sbjct: 127 GLINYD-GLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVC 185
Query: 231 PVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
                     V GV+  G GCA PN PG++ RV+ +  W+
Sbjct: 186 E---QHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWI 222

>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With The Sema Domain Of The Met Receptor Length = 234

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 104/220 (47%), Gaps = 18/220 (8%)
Query: 59  WLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM--LRRFSFSPTEQVRP 116
           W+++L       CGG ++ ESWV+TA  C    +   +E + G+  +        +QV  
Sbjct: 13  WMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLN 72
Query: 117 VSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAV 176
           VS++V           +DL L++LA P   + +V  I LP+   T    ++C+  GWG  
Sbjct: 73  VSQLVY------GPEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYT 126
Query: 177 FEHGPDPDHMREVQVPIL---PACKHYEDRIA---DVICAGMPQGGRDTCQGDSGGPLLC 230
                D   +R   + I+      +H+  ++      ICAG  + G   C+GD GGPL+C
Sbjct: 127 GLINYD-GLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVC 185
Query: 231 PVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
                     V GV+  G GCA PN PG++ RV+ +  W+
Sbjct: 186 E---QHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWI 222

>pdb|2RDL|A Chain A, Hamster Chymase 2 Length = 226

Iteration: 1
 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 20/232 (8%)
Query: 46  VVGGKKAELGAWPWL----IALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           ++GG +    A P++    I    +    C G ++  ++VMTAAHC          V  G
Sbjct: 1   IIGGTECRPHARPYMAYLEIVTPENHLSACSGFLIRRNFVMTAAHCAG----RSITVLLG 56
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
              +     T Q   V +   H  +    + ND+ LL+L         V  + +   + +
Sbjct: 57  AHNKKVKEDTWQKLEVEKQFPHPKYDDRLVLNDIMLLKLKEKANLTLGVGTLPISAKSNS 116
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPIL--PACKHYEDRIAD-VICAGMPQGGRD 218
             P   C AVGWG    + P  D ++EV++ IL   ACKH+ED   +  +C G P+  R+
Sbjct: 117 IPPGRVCRAVGWGRTNVNEPPSDTLQEVKMRILDPQACKHFEDFHQEPQLCVGNPKKIRN 176
Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             +GDSGGPLLC            G+ S+    A+P  P V+TR+S + PW+
Sbjct: 177 VYKGDSGGPLLCA-------GIAQGIASYVLRNAKP--PSVFTRISHYRPWI 219

>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G Length = 227

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 18/205 (8%)
Query: 71  CGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAE 130
           CGG ++ + +V+TAAHC    +     V  G     +   T+Q+ PV++ + H  +   +
Sbjct: 30  CGGFLVRDKFVLTAAHC----KGRSMTVTLGAHNIKAKEETQQIIPVAKAIPHPDYNPDD 85
Query: 131 MTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQ 190
            +ND+ LL+L    +  R VRP+ LP      +P   C   GWG V   G  P  + EV+
Sbjct: 86  RSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVK 145
Query: 191 VPILP--ACK-HYEDRI--ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVV 245
           + +     C+  ++     A+ IC G  +    + +GDSGGPL+C       +   AG+V
Sbjct: 146 LTVQKDQVCESQFQSSYNRANEICVGDSKIKGASFRGDSGGPLVC-------KRAAAGIV 198
Query: 246 SHGEGCARPNEPGVYTRVSQFVPWL 270
           S+G+     + P V+TRV  FV W+
Sbjct: 199 SYGQ--TDGSAPQVFTRVLSFVSWI 221

>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin Length = 234

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 31/240 (12%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           V+GG +  +     L+A +    F C G +++E WV+TAAHC    +   F++  G+  +
Sbjct: 1   VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHC----DNTNFQMKLGVHSK 56
Query: 106 FSFSPTEQVR-PVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
              +  EQ R P  + +  +      +  D+ L++L + +  + ++  + L   +  P  
Sbjct: 57  KVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHI--VPLSLPSSPPSV 114
Query: 165 YSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIAD-----------VICAGMP 213
            S C  +GWG++      P  +    VP        +D +              +CAG+ 
Sbjct: 115 GSVCHIMGWGSI-----TPIKVTYPDVPYCAYINLLDDAVCQAGYPELLTEYRTLCAGIL 169
Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMS 272
           +GG+DTC GDSGGPL+C      G++   G+VS G   C +  +PGVYT+V  +  W+ S
Sbjct: 170 EGGKDTCGGDSGGPLIC-----NGQF--QGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQS 222

>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At 1.9-Angstroms Resolution Length = 224

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 98/205 (47%), Gaps = 20/205 (9%)
Query: 71  CGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAE 130
           CGG ++   +V+TAAHC  G E     V  G         T+Q   V + ++H  +    
Sbjct: 30  CGGFLISRQFVLTAAHC-KGRE---ITVILGAHDVRKRESTQQKIKVEKQIIHESYNSVP 85
Query: 131 MTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQ 190
             +D+ LL+L   +     V  + LP  ++   P + C A GWG      P    +REV+
Sbjct: 86  NLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVE 145
Query: 191 VPIL--PAC---KHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVV 245
           + I+   AC   ++YE +    +C G P   R    GDSGGPLLC            G+V
Sbjct: 146 LRIMDEKACVDYRYYEYKFQ--VCVGSPTTLRAAFMGDSGGPLLCA-------GVAHGIV 196
Query: 246 SHGEGCARPNEPGVYTRVSQFVPWL 270
           S+G   A+P  P ++TRVS +VPW+
Sbjct: 197 SYGHPDAKP--PAIFTRVSTYVPWI 219

>pdb|1KYN|B Chain B, Cathepsin-G Length = 235

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 115/244 (47%), Gaps = 27/244 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRD---GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           ++GG+++   + P++  L      G   CGG ++ E +V+TAAHC          V  G 
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGS----NINVTLGA 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
                   T+Q     R + H  + +  + ND+ LLQL+  +R NR V P+ LP   E  
Sbjct: 57  HNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGL 116
Query: 163 EPYSTCTAVGWGAV-FEHGPDPDHMREVQVPI------LPACKHYEDRIADVICAGMPQG 215
            P + CT  GWG V    G D   +REVQ+ +      L     Y+ R    IC G  + 
Sbjct: 117 RPGTLCTVAGWGRVSMRRGTDT--LREVQLRVQRDRQCLRIFGSYDPR--RQICVGDRRE 172
Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
            +   +GDSGGPLLC            G+VS+G+    P  P V+TRVS F+PW+ +   
Sbjct: 173 RKAAFKGDSGGPLLCNN-------VAHGIVSYGKSSGVP--PEVFTRVSSFLPWIRTTMR 223
Query: 276 RAKV 279
             K+
Sbjct: 224 SFKL 227

>pdb|3FZZ|A Chain A, Structure Of Grc Length = 227

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 18/205 (8%)
Query: 71  CGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAE 130
           CGG ++ + +V+TAAHC    +     V  G     +   T+Q+ PV++ + H  +   +
Sbjct: 30  CGGFLVRDKFVLTAAHC----KGRSMTVTLGAHNIKAKEETQQIIPVAKAIPHPDYNPDD 85
Query: 131 MTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQ 190
            +ND+ LL+L    +  R VRP+ LP      +P   C   GWG V   G  P  + EV+
Sbjct: 86  RSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVK 145
Query: 191 VPILP--ACK-HYEDRI--ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVV 245
           + +     C+  ++     A+ IC G  +    + + DSGGPL+C       +   AG+V
Sbjct: 146 LTVQKDQVCESQFQSSYNRANEICVGDSKIKGASFEEDSGGPLVC-------KRAAAGIV 198
Query: 246 SHGEGCARPNEPGVYTRVSQFVPWL 270
           S+G+     + P V+TRV  FV W+
Sbjct: 199 SYGQ--TDGSAPQVFTRVLSFVSWI 221

>pdb|1AU8|A Chain A, Human Cathepsin G Length = 224

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 113/238 (47%), Gaps = 27/238 (11%)
Query: 46  VVGGKKAELGAWPWLIALYRD---GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           ++GG+++   + P++  L      G   CGG ++ E +V+TAAHC          V  G 
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGS----NINVTLGA 56
Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
                   T+Q     R + H  + +  + ND+ LLQL+  +R NR V P+ LP   E  
Sbjct: 57  HNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGL 116
Query: 163 EPYSTCTAVGWGAV-FEHGPDPDHMREVQVPI------LPACKHYEDRIADVICAGMPQG 215
            P + CT  GWG V    G D   +REVQ+ +      L     Y+ R    IC G  + 
Sbjct: 117 RPGTLCTVAGWGRVSMRRGTDT--LREVQLRVQRDRQCLRIFGSYDPR--RQICVGDRRE 172
Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
            +   +GDSGGPLLC            G+VS+G+    P  P V+TRVS F+PW+ + 
Sbjct: 173 RKAAFKGDSGGPLLCNN-------VAHGIVSYGKSSGVP--PEVFTRVSSFLPWIRTT 221

>pdb|1NN6|A Chain A, Human Pro-Chymase Length = 228

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 104/234 (44%), Gaps = 20/234 (8%)
Query: 44  GRVVGGKKAELGAWPWL----IALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVY 99
           G ++GG + +  + P++    I         CGG ++  ++V+TAAHC          V 
Sbjct: 1   GEIIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAG----RSITVT 56
Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVT 159
            G         T Q   V +   H  +  + + +D+ LL+L         V  +  P   
Sbjct: 57  LGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQF 116
Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPIL--PACKHYEDRIADV-ICAGMPQGG 216
               P   C   GWG      P  D ++EV++ ++   AC H+ D   ++ +C G P+  
Sbjct: 117 NFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKT 176
Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           +   +GDSGGPLLC            G+VS+G   A+P  P V+TR+S + PW+
Sbjct: 177 KSAFKGDSGGPLLCA-------GVAQGIVSYGRSDAKP--PAVFTRISHYRPWI 221

>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone Length = 226

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 16/203 (7%)
Query: 71  CGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAE 130
           CGG ++  ++V+TAAHC          V  G         T Q   V +   H  +  + 
Sbjct: 30  CGGFLIRRNFVLTAAHCAG----RSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTST 85
Query: 131 MTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQ 190
           + +D+ LL+L         V  +  P       P   C   GWG      P  D ++EV+
Sbjct: 86  LHHDIMLLKLKEKASLTLAVGTLPFPSQKNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVK 145
Query: 191 VPIL--PACKHYEDRIADV-ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSH 247
           + ++   AC H+ D   ++ +C G P+  +   +GDSGGPLLC            G+VS+
Sbjct: 146 LRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGAAQ-------GIVSY 198
Query: 248 GEGCARPNEPGVYTRVSQFVPWL 270
           G   A+P  P V+TR+S + PW+
Sbjct: 199 GRSDAKP--PAVFTRISHYQPWI 219

>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9 Angstroms Resolution Length = 226

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 20/232 (8%)
Query: 46  VVGGKKAELGAWPWL----IALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           ++GG +++  + P++    I         CGG ++  ++V+TAAHC          V  G
Sbjct: 1   IIGGTESKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAG----RSITVTLG 56
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
                    T Q   V +   H  +  + + +D+ LL+L         V  +  P     
Sbjct: 57  AHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNF 116
Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPIL--PACKHYEDRIADV-ICAGMPQGGRD 218
             P   C   GWG      P  D ++EV++ ++   AC H+ D   ++ +C G P+  + 
Sbjct: 117 VPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKS 176
Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
             +GDSGGPLLC            G+VS+G   A+P  P V+TR+S + PW+
Sbjct: 177 AFKGDSGGPLLCA-------GVAQGIVSYGRSDAKP--PAVFTRISHYRPWI 219

>pdb|2KAI|B Chain B, Refined 2.5 Angstroms X-Ray Crystal Structure Of The Complex Formed By Porcine Kallikrein A And The Bovine Pancreatic Trypsin Inhibitor. Crystallization, Patterson Search, Structure Determination, Refinement, Structure And Comparison With Its Components And With The Bovine Trypsin- Pancreatic Trypsin Inhibitor Complex Length = 152

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 85/150 (56%), Gaps = 19/150 (12%)
Query: 130 EMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPD----PDH 185
           + ++DL LL+L +P +    V+ + LP  T+ PE  STC A GWG++ E GPD    PD 
Sbjct: 5   DYSHDLMLLRLQSPAKITDAVKVLELP--TQEPELGSTCEASGWGSI-EPGPDDFEFPDE 61
Query: 186 MREVQVPILP----ACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYV 241
           ++ VQ+ +L     A  H +     ++CAG   GG+DTC GDSGGPL+C      G W  
Sbjct: 62  IQCVQLTLLQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLIC-----NGMW-- 114
Query: 242 AGVVSHGEG-CARPNEPGVYTRVSQFVPWL 270
            G+ S G   C   N+P +YT++  ++ W+
Sbjct: 115 QGITSWGHTPCGSANKPSIYTKLIFYLDWI 144

>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small Molecule Inhibitor Length = 226

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 16/203 (7%)
Query: 71  CGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAE 130
           CGG ++  ++V+TAAHC          V  G         T Q   V +   H  +  + 
Sbjct: 30  CGGFLIRRNFVLTAAHCAG----RSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTST 85
Query: 131 MTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQ 190
           + +D+ LL+L         V  +  P       P   C   GWG      P  D ++EV+
Sbjct: 86  LHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVK 145
Query: 191 VPIL--PACKHYEDRIADV-ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSH 247
           + ++   AC H+ D   ++ +C G P+  +   +GDSGGPLLC            G+VS+
Sbjct: 146 LRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAGAAQ-------GIVSY 198
Query: 248 GEGCARPNEPGVYTRVSQFVPWL 270
           G   A+P  P V+TR+S + PW+
Sbjct: 199 GRSDAKP--PAVFTRISHYQPWI 219

>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex Length = 226

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 16/203 (7%)
Query: 71  CGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAE 130
           CGG ++  ++V+TAAHC          V  G         T Q   V +   H  +  + 
Sbjct: 30  CGGFLIRRNFVLTAAHCAG----RSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTST 85
Query: 131 MTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQ 190
           + +D+ LL+L         V  +  P       P   C   GWG      P  D ++EV+
Sbjct: 86  LHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVK 145
Query: 191 VPIL--PACKHYEDRIADV-ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSH 247
           + ++   AC H+ D   ++ +C G P+  +   +GDSGGPLLC            G+VS+
Sbjct: 146 LRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCA-------GVAQGIVSY 198
Query: 248 GEGCARPNEPGVYTRVSQFVPWL 270
           G   A+P  P V+TR+S + PW+
Sbjct: 199 GRSDAKP--PAVFTRISHYRPWI 219

>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 131

Iteration: 1
 Score = 87.4 bits (215), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 4/130 (3%)
Query: 46  VVGGKKAELGAWPWLIALY-RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           +V G++A  G+WPW ++L  + GF  CGG +++E+WV+TAAHC  G       V AG   
Sbjct: 1   IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHC--GVTTSDV-VVAGEFD 57
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
           + S S   Q   ++++  +S +    + ND+ LL+L+    +++ V  +CLP  ++    
Sbjct: 58  QGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAA 117
Query: 165 YSTCTAVGWG 174
            +TC   GWG
Sbjct: 118 GTTCVTTGWG 127

>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 128

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 49  GKKAELGAWPWLIALY-RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFS 107
           G+ A  G+WPW ++L  + GF  CGG ++ E WV+TAAHC     K    V AG   + S
Sbjct: 1   GEDAIPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHCG---VKTSDVVVAGEFDQGS 57
Query: 108 FSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYST 167
                QV  ++++  +  F    + ND+ LL+LA P +++  V  +CLP+V +   P + 
Sbjct: 58  DEENIQVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVCLPNVDDDFPPGTV 117
Query: 168 CTAVGWG 174
           C   GWG
Sbjct: 118 CATTGWG 124

>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of Prophenoloxidase Activating Factor-I In A Zymogen Form Length = 278

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 116/258 (44%), Gaps = 33/258 (12%)
Query: 45  RVVGGKKAELGAWPWLIAL-YRDGF----FHCGGVVLDESWVMTAAHCVDG--------F 91
           +++ G       +PW   + Y++      F CGG +++  +++TAAHCV G         
Sbjct: 22  KILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAGRVLRVVGAL 81
Query: 92  EKHYFEVYAGMLRRFSFSPTEQVRP-------VSRIVMHSMF--KRAEMTNDLALLQLAA 142
            K     +        +       P       +   + H  +     +  +D+AL++L  
Sbjct: 82  NKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNR 141
Query: 143 PLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYED 202
            + +  Y+RP+CLP   E  +     T VGWG   E G      +++ VP++ A +  + 
Sbjct: 142 QVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRT-ETGQYSTIKQKLAVPVVHAEQCAKT 200
Query: 203 ------RI-ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPN 255
                 R+ +  +CAG  +  +D+C GDSGGPLL      Q  +++ G+VS G  C    
Sbjct: 201 FGAAGVRVRSSQLCAG-GEKAKDSCGGDSGGPLLAERANQQ--FFLEGLVSFGATCGTEG 257
Query: 256 EPGVYTRVSQFVPWLMSN 273
            PG+YT+V ++  W+  N
Sbjct: 258 WPGIYTKVGKYRDWIEGN 275

>pdb|1KDQ|A Chain A, Crystal Structure Analysis Of The Mutant S189d Rat Chymotrypsin Length = 131

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
Query: 46  VVGGKKAELGAWPWLIALY-RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           +V G+ A  G+WPW ++L  + GF  CGG ++ E WV+TAAHC  G +     V AG   
Sbjct: 1   IVNGEDAIPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC--GVKTSDV-VVAGEFD 57
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
           + S     QV  ++++  +  F    + ND+ LL+LA P +++  V  + LP+V +   P
Sbjct: 58  QGSDEENIQVLKIAQVFKNPKFNMFTVRNDITLLKLATPAQFSETVSAVSLPNVDDDFPP 117
Query: 165 YSTCTAVGWG 174
            + C   GWG
Sbjct: 118 GTVCATTGWG 127

>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human Leukocyte Elastase In A Complex With A Valine Chloromethyl Ketone Inhibitor Length = 218

Iteration: 1
 Score = 84.3 bits (207), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 100/228 (43%), Gaps = 14/228 (6%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG++A   AWP++++L   G   CG  ++  ++VM+AAHCV         V  G    
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNL 60
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               PT QV  V RI   + +    + ND+ +LQL      N  V+   LP         
Sbjct: 61  SRREPTRQVFAVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNG 119
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSG 225
             C A+GWG +  +      ++E+ V ++ +     +     +C  +       C GDSG
Sbjct: 120 VQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSN-----VCTLVRGRQAGVCFGDSG 174
Query: 226 GPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMS 272
            PL+C          + G+ S    GCA    P  +  V+QFV W+ S
Sbjct: 175 SPLVC-------NGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDS 215

>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte Elastase (Pmn Elastase) And The Third Domain Of The Turkey Ovomucoid Inhibitor Length = 218

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 100/228 (43%), Gaps = 14/228 (6%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG++A   AWP++++L   G   CG  ++  ++VM+AAHCV         V  G    
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNL 60
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               PT QV  V RI   + +    + ND+ +LQL      N  V+   LP         
Sbjct: 61  SRREPTRQVFAVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNG 119
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSG 225
             C A+GWG +  +      ++E+ V ++ +     +     +C  +       C GDSG
Sbjct: 120 VQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSN-----VCTLVRGRQAGVCFGDSG 174
Query: 226 GPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMS 272
            PL+C          + G+ S    GCA    P  +  V+QFV W+ S
Sbjct: 175 SPLVC-------NGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDS 215

>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms Resolution Length = 218

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 99/228 (43%), Gaps = 14/228 (6%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG++A   AWP++++L   G   CG  ++  ++VM+AAHCV         V  G    
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNL 60
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               PT QV  V RI     +    + ND+ +LQL      N  V+   LP         
Sbjct: 61  SRREPTRQVFAVQRI-FEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNG 119
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSG 225
             C A+GWG +  +      ++E+ V ++ +     +     +C  +       C GDSG
Sbjct: 120 VQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSN-----VCTLVRGRQAGVCFGDSG 174
Query: 226 GPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMS 272
            PL+C          + G+ S    GCA    P  +  V+QFV W+ S
Sbjct: 175 SPLVC-------NGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDS 215

>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl 101, 146 Length = 218

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 99/228 (43%), Gaps = 14/228 (6%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG++A   AWP++++L   G   CG  ++  ++VM+AAHCV         V  G    
Sbjct: 1   IVGGRRARPHAWPFMVSLQLAGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNL 60
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               PT QV  V RI     +    + ND+ +LQL      N  V+   LP         
Sbjct: 61  SRREPTRQVFAVQRI-FEDGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNG 119
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSG 225
             C A+GWG +  +      ++E+ V ++ +     +     +C  +       C GDSG
Sbjct: 120 VQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSN-----VCTLVRGRQAGVCFGDSG 174
Query: 226 GPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMS 272
            PL+C          + G+ S    GCA    P  +  V+QFV W+ S
Sbjct: 175 SPLVC-------NGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDS 215

>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP Length = 234

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 100/237 (42%), Gaps = 28/237 (11%)
Query: 46  VVGGKKAELGAWPWLIALY-RDGFFHCGGVVLDESWVMTAAHCVDGFEKHY--FEVYAGM 102
           VVGG     G  PW ++L  R G   CGG ++ E W++TA  C          +EV+ G 
Sbjct: 1   VVGGHP---GNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGT 57
Query: 103 LRRF--SFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE 160
           L +      P+ Q  PV+++V           + L LL+L   +  N+ V  ICLP    
Sbjct: 58  LFQNPQHGEPSLQRVPVAKMVC------GPSGSQLVLLKLERSVTLNQRVALICLPPEWY 111
Query: 161 TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIA-------DVICAGMP 213
              P + C   GWG     G D      + V +L    + E  I          +C    
Sbjct: 112 VVPPGTKCEIAGWGETKGTGND----TVLNVALLNVISNQECNIKHRGRVRESEMCTEGL 167
Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
                 C+GD GGPL C    +   W + G++     CAR   P V+TRVS FV W+
Sbjct: 168 LAPVGACEGDYGGPLAC---FTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWI 221

>pdb|2RG3|A Chain A, Covalent Complex Structure Of Elastase Length = 218

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 14/228 (6%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG++A   AWP++++L   G   CG  ++  ++VM+AAHCV         V  G    
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNL 60
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               PT QV  V RI   + +    + ND+ +LQL      N  V+   LP         
Sbjct: 61  SRREPTRQVFAVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNG 119
Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSG 225
             C A+GWG +  +      ++E+ V ++ +     +     +C  +       C GD G
Sbjct: 120 VQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSN-----VCTLVRGRQAGVCFGDXG 174
Query: 226 GPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMS 272
            PL+C          + G+ S    GCA    P  +  V+QFV W+ S
Sbjct: 175 SPLVC-------NGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDS 215

>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum Length = 230

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 103/238 (43%), Gaps = 21/238 (8%)
Query: 46  VVGGKKAELGAWPWL----IALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           ++ G +A  G +P+     I L       CGG ++D  W++TAAHCV   +     VY G
Sbjct: 1   IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCV--HDAVSVVVYLG 58
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
              ++     E V    RI+ HSMF      ND+AL+++   + Y   ++PI LP   E 
Sbjct: 59  SAVQYE---GEAVVNSERIISHSMFNPDTYLNDVALIKIPH-VEYTDNIQPIRLPSGEEL 114
Query: 162 PEPYST--CTAVGWGAVFEHGPDPDHMREVQVPILPACKHY-EDRIADVICAGMPQGGRD 218
              +     T  GWG          +   + +      + Y    I +    G    G+ 
Sbjct: 115 NNKFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTSDGKS 174
Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSH--GEGCARPNEPGVYTRVSQFVPWLMSNS 274
            C GDSGGP +        +  + GVVS   G GC    +P  ++RV+ ++ W+  N+
Sbjct: 175 PCFGDSGGPFVL-----SDKNLLIGVVSFVSGAGC-ESGKPVGFSRVTSYMDWIQQNT 226

>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein (Cap37) Length = 225

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 95/229 (41%), Gaps = 20/229 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM--L 103
           +VGG+KA    +P+L ++   G   CGG ++   +VMTAA C          V  G   L
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGSHECGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDL 60
Query: 104 RRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE 163
           RR     + Q   +S +  +  +   +  NDL LLQL         V  + LP    T E
Sbjct: 61  RRRE-RQSRQTFSISSMSENG-YDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVE 118
Query: 164 PYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIA-DVICAGMPQGGRDTCQG 222
             + C   GWG+    G      R V V + P     ED+   + +C G+       C G
Sbjct: 119 AGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTP-----EDQCRPNNVCTGVLTRRGGICNG 173
Query: 223 DSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWL 270
           D G PL+C            GV S   G C R   P  +TRV+ F  W+
Sbjct: 174 DGGTPLVC-------EGLAHGVASFSLGPCGR--GPDFFTRVALFRDWI 213

>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex Length = 347

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 113/293 (38%), Gaps = 39/293 (13%)
Query: 7   GARNMAGNPMEARNMAGNPLGARNMATDMAGNPILGSGRVVGGKKAELGAWPWLIALYRD 66
           G   +  N      + G  L           NP+    R++GG     G++PW   +   
Sbjct: 64  GVYTLDSNKQWTNKVTGEKLPECEAVCGKPKNPVDQVQRIMGGSLDAKGSFPWQAKMISH 123
Query: 67  GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEV--YAGMLRRFSFSPTEQVRPVSRIVMHS 124
                G  +++E W++T A  +    K+  +    A  LR +     +Q   + +++ H 
Sbjct: 124 HNLTSGATLINEQWLLTTAKNLRLGHKNDTKAKDIAPTLRLYVGK--KQEVEIEKVIFHP 181
Query: 125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPD-- 182
                  T D+ L++L   +  N  V PICLP      + Y     VG+ + +    +  
Sbjct: 182 ----DNSTVDIGLIKLKQKVPVNERVMPICLPS-----KDYVNVGLVGYVSGWGRNANLN 232
Query: 183 -PDHMREVQVPILPACK---HYEDRIA------------------DVICAGMPQGGRDTC 220
             +H++ V +P+    K   +YE                         CAG+ +   DTC
Sbjct: 233 FTEHLKYVMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTC 292
Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
            GD+G             WY AG++S  + C R  E GVY RV+  + W+ + 
Sbjct: 293 YGDAGSAFAVH-DKDDDTWYAAGILSFDKSC-RTAEYGVYVRVTSILDWIQTT 343

>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of Porcine Epsilon-Trypsin Length = 98

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 59/93 (63%), Gaps = 11/93 (11%)
Query: 183 PDHMREVQVPILP--ACKH-YEDRIA-DVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGR 238
           P  ++ ++ P+L   +CK  Y  +I  ++IC G  QGG+D+CQGDSGGP++C        
Sbjct: 7   PSLLQCLKAPVLSNSSCKSSYPGQITGNMICVGFLQGGKDSCQGDSGGPVVC-------N 59
Query: 239 WYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLM 271
             + G+VS G GCA+ N+PGVYT+V  +V W+ 
Sbjct: 60  GQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQ 92

>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein (cap37) Length = 225

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 95/229 (41%), Gaps = 20/229 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM--L 103
           +VGG+KA    +P+L ++   G   CGG ++   +VMTAA C          V  G   L
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDL 60
Query: 104 RRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE 163
           RR     + Q   +S +  +  +   +  NDL LLQL         V  + LP    T E
Sbjct: 61  RRRE-RQSRQTFSISSMSENG-YDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVE 118
Query: 164 PYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIA-DVICAGMPQGGRDTCQG 222
             + C   GWG+    G      R V V + P     ED+   + +C G+       C G
Sbjct: 119 AGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTP-----EDQCRPNNVCTGVLTRRGGICNG 173
Query: 223 DSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWL 270
           D G PL+C            GV S   G C R   P  +TRV+ F  W+
Sbjct: 174 DQGTPLVC-------EGLAHGVASFSLGPCGR--GPDFFTRVALFRDWI 213

>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp Length = 225

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 95/229 (41%), Gaps = 20/229 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM--L 103
           +VGG+KA    +P+L ++   G   CGG ++   +VMTAA C          V  G   L
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDL 60
Query: 104 RRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE 163
           RR     + Q   +S +  +  +   +  NDL LLQL         V  + LP    T E
Sbjct: 61  RRRE-RQSRQTFSISSMSENG-YDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVE 118
Query: 164 PYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIA-DVICAGMPQGGRDTCQG 222
             + C   GWG+    G      R V V + P     ED+   + +C G+       C G
Sbjct: 119 AGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTP-----EDQCRPNNVCTGVLTRRGGICNG 173
Query: 223 DSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWL 270
           D G PL+C            GV S   G C R   P  +TRV+ F  W+
Sbjct: 174 DGGTPLVC-------EGLAHGVASFSLGPCGR--GPDFFTRVALFRDWI 213

>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto Catalyticaly Produced Native Peptide At 2.15 A Resolution Length = 98

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 59/93 (63%), Gaps = 11/93 (11%)
Query: 183 PDHMREVQVPILP--ACKH-YEDRIA-DVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGR 238
           P  ++ ++ P+L   +CK  Y  +I  ++IC G  +GG+D+CQGDSGGP++C        
Sbjct: 7   PSLLQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVC-------N 59
Query: 239 WYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLM 271
             + G+VS G GCA+ N+PGVYT+V  +V W+ 
Sbjct: 60  GQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQ 92

>pdb|3H7T|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease Paralogue S-D1 (Smipp-S-D1) Length = 235

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 108/234 (46%), Gaps = 25/234 (10%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GGKK+++   PW + +  D    CGG +L  ++V+TAA CVDG +     ++ G   R
Sbjct: 1   IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGTKPSDISIHYGSSYR 60
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRY-NRYVRPICLPDVTETPEP 164
            +   +   + +  +  H +     M N+ A+++   P++  ++  + I LP +   PEP
Sbjct: 61  TTKGTSVMAKKIYIVRYHPL----TMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEP 116
Query: 165 YSTCTAVGWGAV-FEHGPDPDHMREVQVPIL--PAC-KHYEDRIAD------VICAGMPQ 214
            ++    GWG+  F+       + E    ++   +C + Y+   AD      V CAG   
Sbjct: 117 DTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEY 176
Query: 215 GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNE-PGVYTRVSQFV 267
                  GD+G P +       G   + GV S+    + P+E P V+ RV  +V
Sbjct: 177 DETYIGYGDAGDPAV-----QNGT--LVGVASY--ISSMPSEFPSVFLRVGYYV 221

>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 99

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 9/92 (9%)
Query: 183 PDHMREVQVPILPAC---KHYEDRIADVI-CAGMPQGGRDTCQGDSGGPLLCPVPGSQGR 238
           P+ +++  +PI+      K +  +I DV+ CAG    G D+C GDSGGPL+C      G 
Sbjct: 6   PEKLQQAALPIVSEADCKKSWGSKITDVMTCAGAS--GVDSCMGDSGGPLVCQ---KDGV 60
Query: 239 WYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           W +AG+VS G G    + PGVY+RV+  +PW+
Sbjct: 61  WTLAGIVSWGSGVCSTSTPGVYSRVTALMPWV 92

>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin With The Inhibitor Sdz 229-357 Length = 147

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 10/122 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 98  VYAGMLRRFSFSPT-EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120
Query: 156 PD 157
           PD
Sbjct: 121 PD 122

>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat Chymotrypsin Length = 99

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 183 PDHMREVQVPILPAC---KHYEDRIADVI-CAGMPQGGRDTCQGDSGGPLLCPVPGSQGR 238
           P+ +++  +PI+      K +  +I DV+ CAG    G D+C GDSGGPL+C      G 
Sbjct: 6   PEKLQQAALPIVSEADCKKSWGSKITDVMTCAG--ASGVDSCMGDSGGPLVCQ---KDGV 60
Query: 239 WYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           W +AG+VS G G    + P VY+RV+  +PW+
Sbjct: 61  WTLAGIVSWGSGVCSTSTPAVYSRVTALMPWV 92

>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 150

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G+ AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F      
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLL 60
Query: 98  VYAGMLRRFSFS-PTEQVRPVSRIVMHSMFKRAE-MTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +   E +  D+ALL+L  P+  + Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCL 120
Query: 156 PD 157
           PD
Sbjct: 121 PD 122

>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 97

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 183 PDHMREVQVPILPA--CKHY-EDRIAD-VICAGMPQGGRDTCQGDSGGPLLCPVPGSQGR 238
           PD +++  +P+L    CK Y   +I D +ICAG    G  +C GDSGGPL+C      G 
Sbjct: 4   PDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGAS--GVSSCMGDSGGPLVCK---KNGA 58
Query: 239 WYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           W + G+VS G      + PGVY RV+  V W+
Sbjct: 59  WTLVGIVSWGSSTCSTSTPGVYARVTALVNWV 90

>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed With A Synthetic Inhibitor Length = 96

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 183 PDHMREVQVPILPA--CKHYE-DRIAD-VICAGMPQGGRDTCQGDSGGPLLCPVPGSQGR 238
           PD +++  +P+L    CK Y   +I D +ICAG    G  +C GDSGGPL+C      G 
Sbjct: 3   PDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGAS--GVSSCMGDSGGPLVCK---KNGA 57
Query: 239 WYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           W + G+VS G      + PGVY RV+  V W+
Sbjct: 58  WTLVGIVSWGSSTCSTSTPGVYARVTALVNWV 89

>pdb|3H7O|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease Paralogue S-I1 (Smipp-S-I1) Length = 228

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 104/235 (44%), Gaps = 23/235 (9%)
Query: 48  GGKKAELGAWPWLIALYR---DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           GG+K ++   PW +A+     +    CGG +L + +V+TAAHCV  F++    +      
Sbjct: 2   GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCV--FDQKPETIVIQYES 59
Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYN-RYVRPICLPDVTETPE 163
              +    +  P    V  S +++  M ND+A+L+L+ PL+ +    +P  LPD+   P+
Sbjct: 60  TNLWEDPGKSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPK 119
Query: 164 PYSTCTAVGWGAVFEHGPDPDHMREVQVPI--LPACKHYEDRI---ADVICAGMPQGGRD 218
             S     G+G      P    ++  Q+ +  L  C+     I     V CA   + G  
Sbjct: 120 TGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPIFLSLQVFCAQ--KVGVS 177
Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPN-EPGVYTRVSQFVPWLMS 272
              GD+G P +        +  + GV ++     RP   P V+T+V  +V W+  
Sbjct: 178 LESGDAGDPTV-------QQDTLVGVAAYFP--KRPEGAPEVFTKVGSYVSWIQD 223

>pdb|2HNT|F Chain F, Crystallographic Structure Of Human Gamma-Thrombin Length = 105

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 183 PDHMREVQVPIL--PACKHYED-RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGS 235
           P  ++ V +PI+  P CK     RI D + CAG  P  G+  D C+GDSGGP +   P +
Sbjct: 3   PSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 62
Query: 236 QGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
             RWY  G+VS GEGC R  + G YT V +   W+  
Sbjct: 63  N-RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 98

>pdb|2PKS|C Chain C, Thrombin In Complex With Inhibitor Length = 102

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 183 PDHMREVQVPIL--PACKHYED-RIAD-VICAGM-PQGGR--DTCQGDSGGPLLCPVPGS 235
           P  ++ V +PI+  P CK     RI D + CAG  P  G+  D C+GDSGGP +   P +
Sbjct: 3   PSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFN 62
Query: 236 QGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
             RWY  G+VS GEGC R  + G YT V +   W+  
Sbjct: 63  N-RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 98

>pdb|1BBR|E Chain E, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 109

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 183 PDHMREVQVPIL--PACK-HYEDRIAD-VICAGMP--QGGR-DTCQGDSGGPLLCPVPGS 235
           P  ++ V +P++  P CK     RI D + CAG    +G R D C+GDSGGP +   P  
Sbjct: 7   PSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSP-Y 65
Query: 236 QGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER 276
             RWY  G+VS GEGC R  + G YT V +   W+    +R
Sbjct: 66  NNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDR 106

>pdb|1AKS|A Chain A, Crystal Structure Of The First Active Autolysate Form Of The Porcine Alpha Trypsin Length = 125

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG      + P+ ++L     F CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCAANSIPYQVSLNSGSHF-CGGSLINSQWVVSAAHCY----KSRIQVRLGEHNI 55
Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F    + ND+ L++L++P   N  V  + LP         
Sbjct: 56  DVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPR--SCAAAG 113
Query: 166 STCTAVGWG 174
           + C   GWG
Sbjct: 114 TECLISGWG 122

>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin Length = 507

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 108/268 (40%), Gaps = 64/268 (23%)
Query: 57  WPWLIALYR--DGFFHCGGVVLDESWVMTAAHC--VDGFEKHYFEVYAGMLRR------F 106
           W   I++ R   G   C G V+ E +V+TAAHC  VD  E H  +V  G  +R       
Sbjct: 236 WQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKE-HSIKVSVGGEKRDLEIEVV 294
Query: 107 SFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE--- 163
            F P   +       +   +       D+AL++L   L+Y + +RPICLP    T     
Sbjct: 295 LFHPNYNINGKKEAGIPEFYDY-----DVALIKLKNKLKYGQTIRPICLPCTEGTTRALR 349
Query: 164 --PYSTCT--------AVGWGAVFEHGPDPDHMREVQVPILPACK--------HYE---D 202
             P +TC         A    A+F    +    R+ +V I    K         Y    D
Sbjct: 350 LPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRK-EVYIKNGDKKGSCERDAQYAPGYD 408
Query: 203 RIADV--------ICAG--MPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG---- 248
           ++ D+        +C G   P    +TC+GDSGGPL+      + R+   GV+S G    
Sbjct: 409 KVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIV---HKRSRFIQVGVISWGVVDV 465
Query: 249 -EGCARPNEPGVYTR-----VSQFVPWL 270
            +   R  +   + R     + Q +PWL
Sbjct: 466 CKNQKRQKQVPAHARDFHINLFQVLPWL 493

>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B Length = 497

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 108/268 (40%), Gaps = 64/268 (23%)
Query: 57  WPWLIALYR--DGFFHCGGVVLDESWVMTAAHC--VDGFEKHYFEVYAGMLRR------F 106
           W   I++ R   G   C G V+ E +V+TAAHC  VD  E H  +V  G  +R       
Sbjct: 228 WQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKE-HSIKVSVGGEKRDLEIEVV 286
Query: 107 SFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE--- 163
            F P   +       +   +       D+AL++L   L+Y + +RPICLP    T     
Sbjct: 287 LFHPNYNINGKKEAGIPEFYDY-----DVALIKLKNKLKYGQTIRPICLPCTEGTTRALR 341
Query: 164 --PYSTCT--------AVGWGAVFEHGPDPDHMREVQVPILPACK--------HYE---D 202
             P +TC         A    A+F    +    R+ +V I    K         Y    D
Sbjct: 342 LPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRK-EVYIKNGDKKGSCERDAQYAPGYD 400
Query: 203 RIADV--------ICAG--MPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG---- 248
           ++ D+        +C G   P    +TC+GDSGGPL+      + R+   GV+S G    
Sbjct: 401 KVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIV---HKRSRFIQVGVISWGVVDV 457
Query: 249 -EGCARPNEPGVYTR-----VSQFVPWL 270
            +   R  +   + R     + Q +PWL
Sbjct: 458 CKNQKRQKQVPAHARDFHINLFQVLPWL 485

>pdb|2OK5|A Chain A, Human Complement Factor B Length = 752

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 106/267 (39%), Gaps = 62/267 (23%)
Query: 57  WPWLIALYR--DGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGMLRR------FS 107
           W   I++ R   G   C G V+ E +V+TAAHC    +K H  +V  G  +R        
Sbjct: 480 WQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVL 539
Query: 108 FSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE---- 163
           F P   +       +   +       D+AL++L   L+Y + +RPICLP    T      
Sbjct: 540 FHPNYNINGKKEAGIPEFYDY-----DVALIKLKNKLKYGQTIRPICLPCTEGTTRALRL 594
Query: 164 -PYSTCT--------AVGWGAVFEHGPDPDHMREVQVPILPACKHYE-----------DR 203
            P +TC         A    A+F    +    R+ +V I    K              D+
Sbjct: 595 PPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRK-EVYIKNGDKKGSCERDAQYAPGYDK 653
Query: 204 IADV--------ICAG--MPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG----- 248
           + D+        +C G   P    +TC+GDSGGPL+      + R+   GV+S G     
Sbjct: 654 VKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIV---HKRSRFIQVGVISWGVVDVC 710
Query: 249 EGCARPNEPGVYTR-----VSQFVPWL 270
           +   R  +   + R     + Q +PWL
Sbjct: 711 KNQKRQKQVPAHARDFHINLFQVLPWL 737

>pdb|2KAI|A Chain A, Refined 2.5 Angstroms X-Ray Crystal Structure Of The Complex Formed By Porcine Kallikrein A And The Bovine Pancreatic Trypsin Inhibitor. Crystallization, Patterson Search, Structure Determination, Refinement, Structure And Comparison With Its Components And With The Bovine Trypsin- Pancreatic Trypsin Inhibitor Complex Length = 80

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG++ E  + PW +A+Y    F CGGV+++  WV+TAAHC    +   +EV+ G    
Sbjct: 1   IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHC----KNDNYEVWLGRHNL 56
Query: 106 FSFSPTEQVRPVSRIVMHSMF 126
           F    T Q   V+    H  F
Sbjct: 57  FENENTAQFFGVTADFPHPGF 77

>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With Factors B And D Length = 732

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 106/267 (39%), Gaps = 62/267 (23%)
Query: 57  WPWLIALYR--DGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGMLRR------FS 107
           W   I++ R   G   C G V+ E +V+TAAHC    +K H  +V  G  +R        
Sbjct: 461 WQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVL 520
Query: 108 FSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE---- 163
           F P   +       +   +       D+AL++L   L+Y + +RPICLP    T      
Sbjct: 521 FHPNYNINGKKEAGIPEFYDY-----DVALIKLKNKLKYGQTIRPICLPCTEGTTRALRL 575
Query: 164 -PYSTCT--------AVGWGAVFEHGPDPDHMREVQVPILPACKHYE-----------DR 203
            P +TC         A    A+F    +    R+ +V I    K              D+
Sbjct: 576 PPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRK-EVYIKNGDKKGSCERDAQYAPGYDK 634
Query: 204 IADV--------ICAG--MPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG----- 248
           + D+        +C G   P    +TC+GDSGGPL+      + R+   GV+S G     
Sbjct: 635 VKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIV---HKRSRFIQVGVISWGVVDVC 691
Query: 249 EGCARPNEPGVYTR-----VSQFVPWL 270
           +   R  +   + R     + Q +PWL
Sbjct: 692 KNQKRQKQVPAHARDFHINLFQVLPWL 718

>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B Length = 741

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 106/267 (39%), Gaps = 62/267 (23%)
Query: 57  WPWLIALYR--DGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGMLRR------FS 107
           W   I++ R   G   C G V+ E +V+TAAHC    +K H  +V  G  +R        
Sbjct: 470 WQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVL 529
Query: 108 FSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE---- 163
           F P   +       +   +       D+AL++L   L+Y + +RPICLP    T      
Sbjct: 530 FHPNYNINGKKEAGIPEFYDY-----DVALIKLKNKLKYGQTIRPICLPCTEGTTRALRL 584
Query: 164 -PYSTCT--------AVGWGAVFEHGPDPDHMREVQVPILPACKHYE-----------DR 203
            P +TC         A    A+F    +    R+ +V I    K              D+
Sbjct: 585 PPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRK-EVYIKNGDKKGSCERDAQYAPGYDK 643
Query: 204 IADV--------ICAG--MPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG----- 248
           + D+        +C G   P    +TC+GDSGGPL+      + R+   GV+S G     
Sbjct: 644 VKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIV---HKRSRFIQVGVISWGVVDVC 700
Query: 249 EGCARPNEPGVYTR-----VSQFVPWL 270
           +   R  +   + R     + Q +PWL
Sbjct: 701 KNQKRQKQVPAHARDFHINLFQVLPWL 727

>pdb|1DLE|A Chain A, Factor B Serine Protease Domain Length = 298

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 107/268 (39%), Gaps = 64/268 (23%)
Query: 57  WPWLIALYR--DGFFHCGGVVLDESWVMTAAHC--VDGFEKHYFEVYAGMLRR------F 106
           W   I++ R   G   C G V+ E +V+TAAHC  VD  E H  +V  G  +R       
Sbjct: 29  WQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKE-HSIKVSVGGEKRDLEIEVV 87
Query: 107 SFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE--- 163
            F P   +       +   +       D+AL++L   L+Y + +RPICLP    T     
Sbjct: 88  LFHPNYNINGKKEAGIPEFY-----DYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALR 142
Query: 164 --PYSTCT--------AVGWGAVFEHGPDPDHMREVQVPILPACKHYE-----------D 202
             P +TC         A    A+F    +    R+ +V I    K              D
Sbjct: 143 LPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRK-EVYIKNGDKKGSCERDAQYAPGYD 201
Query: 203 RIADV--------ICAG--MPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG---- 248
           ++ D+        +C G   P    +TC+GDSGGPL+      + R+   GV+S G    
Sbjct: 202 KVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIV---HKRSRFIQVGVISWGVVDV 258
Query: 249 -EGCARPNEPGVYTR-----VSQFVPWL 270
            +   R  +   + R     + Q +PWL
Sbjct: 259 CKNQKRQKQVPAHARDFHINLFQVLPWL 286

>pdb|2I6Q|A Chain A, Complement Component C2a Length = 517

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 58  PWLIALYRDGFFHCGGVVLDESWVMTAAHCV-DGFEKHYFEVYAG----------MLRRF 106
           PW + +       C G ++ + WV+TAAHC  DG +   + V  G          ++ + 
Sbjct: 244 PWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEKA 303
Query: 107 SFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLP 156
             SP   V       +   +      +D+ALL+LA  ++ + + RPICLP
Sbjct: 304 VISPGFDVFAKKNQGILEFY-----GDDIALLKLAQKVKMSTHARPICLP 348

>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3- And C5- Convertase Of Human Complement Length = 509

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 58  PWLIALYRDGFFHCGGVVLDESWVMTAAHCV-DGFEKHYFEVYAG----------MLRRF 106
           PW + +       C G ++ + WV+TAAHC  DG +   + V  G          ++ + 
Sbjct: 236 PWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEKA 295
Query: 107 SFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLP 156
             SP   V       +   +      +D+ALL+LA  ++ + + RPICLP
Sbjct: 296 VISPGFDVFAKKNQGILEFY-----GDDIALLKLAQKVKMSTHARPICLP 340

>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 44  GRVVGGKKA-ELGAWPWLIALYR-DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           G +   K+A +L   PW + L   +G   CGGV++ E++V+T A C         + Y  
Sbjct: 91  GVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRNITVKTY-- 148
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD 157
              R S  P   +  ++ + +H  +      NDL+LL+L  P++      P+C P+
Sbjct: 149 -FNRTSQDPL--MIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPE 201

>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein Z-Dependent Inhibitor Length = 283

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 44  GRVVGGKKA-ELGAWPWLIALYR-DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           G +   K+A +L   PW + L   +G   CGGV++ E++V+T A C         + Y  
Sbjct: 50  GVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRNITVKTY-- 107
Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD 157
              R S  P   +  ++ + +H  +      NDL+LL+L  P++      P+C P+
Sbjct: 108 -FNRTSQDPL--MIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPE 160

>pdb|2HNT|C Chain C, Crystallographic Structure Of Human Gamma-Thrombin Length = 70

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 46 VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV 88
          +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+
Sbjct: 1  IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

>pdb|2HNT|E Chain E, Crystallographic Structure Of Human Gamma-Thrombin Length = 81

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 112 EQVRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICLPD 157
           E++  + +I +H  +  R  +  D+AL++L  P+ ++ Y+ P+CLPD
Sbjct: 3   EKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPD 49

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	1e-106
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	1e-102
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	1e-102
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	1e-102
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	1e-102
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	1e-102
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	1e-101
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	1e-101
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	1e-101
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	1e-100
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	1e-100
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	1e-99
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	3e-97
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	4e-97
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	1e-96
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	1e-96
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	2e-96
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	5e-96
1aut_C	250	Activated protein C; serine proteinase, plasma cal	2e-95
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	4e-95
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	3e-94
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	4e-94
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	6e-94
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	2e-93
2xrc_A	565	Human complement factor I; immune system, hydrolas	2e-93
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	3e-93
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	7e-93
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	9e-93
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	1e-92
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	1e-92
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	1e-92
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	2e-92
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	2e-92
1md8_A	329	C1R complement serine protease; innate immunity, a	3e-92
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	1e-91
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	1e-91
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	2e-91
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	7e-91
1gpz_A	399	Complement C1R component; hydrolase, activation, i	7e-91
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	1e-90
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	1e-90
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	2e-90
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	2e-90
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	3e-90
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	5e-90
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	5e-90
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	6e-90
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	1e-89
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	2e-89
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	2e-89
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	4e-89
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	4e-89
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	5e-89
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	8e-89
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	7e-88
1a7s_A	225	Heparin binding protein; serine protease homolog,	9e-88
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	1e-87
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	1e-87
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	4e-87
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	4e-87
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	5e-87
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	1e-86
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	1e-86
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	2e-86
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	6e-86
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	6e-86
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	7e-86
1elv_A	333	Complement C1S component; trypsin-like serin prote	2e-85
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	2e-85
2aiq_A	231	Protein C activator; snake venom serine proteinase	3e-85
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	3e-85
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	3e-85
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	5e-85
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	5e-85
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	6e-85
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	6e-85
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	1e-84
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	1e-84
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	2e-84
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	2e-84
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	3e-84
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	9e-83
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	3e-79
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	3e-79
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	5e-75
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	1e-74
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	1e-73
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	1e-72
3hrz_D	741	Complement factor B; serine protease, glycosilated	7e-63
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	3e-54
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	7e-49
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	3e-37
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	3e-23
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	3e-19
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	4e-11
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	5e-05
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	7e-04

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score =  306 bits (786), Expect = e-106
 Identities = 91/236 (38%), Positives = 130/236 (55%), Gaps = 11/236 (4%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK--HYFEVYAGML 103
           +VGG  A+ GAWPW++ LY D    CG  ++   W+++AAHCV G       +    G+ 
Sbjct: 1   IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLH 60

Query: 104 RRFSF-SPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
            + +  SP    R +  IV++  + R    ND+A++ L   + Y  Y++PI LP+  +  
Sbjct: 61  MKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVF 120

Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH--YEDRI-ADVICAGMPQGGR 217
            P   C+  GWG V   G   D ++E  VP+L    C+    E  I  ++ICAG  +GG 
Sbjct: 121 PPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEYNITENMICAGYEEGGI 180

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           D+CQGDSGGPL+C       RW++AGV S G  CA PN PGVY RVS+F  W+ S 
Sbjct: 181 DSCQGDSGGPLMCQE---NNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSF 233

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score =  298 bits (766), Expect = e-102
 Identities = 83/241 (34%), Positives = 138/241 (57%), Gaps = 12/241 (4%)

Query: 46  VVGGKKAELGAWPWLIALYRD---GFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           +VGG ++  G WPW ++L          CGG ++   WV+TAAHC DG      + +Y+G
Sbjct: 1   IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60

Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
           +L     +       +  I++H  +K +E  +D+AL++L APL Y  + +PI LP   +T
Sbjct: 61  ILELSDITKDTPFSQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDT 120

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH--YEDRI-ADVICAGMPQGG 216
              Y+ C   GWG   E G   + +++V +P++    C+    + +I   ++CAG  +GG
Sbjct: 121 STIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGG 180

Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER 276
           +D C+GDSGGPL+C      G W + G+ S GEGCAR  +PGVYT+V++++ W++  ++ 
Sbjct: 181 KDACKGDSGGPLVCKH---NGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQS 237

Query: 277 A 277
           +
Sbjct: 238 S 238

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score =  297 bits (764), Expect = e-102
 Identities = 88/236 (37%), Positives = 129/236 (54%), Gaps = 13/236 (5%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           VVGG+ A+ G +PW + L       CGG +++E W++TAAHCV+   K    V AG    
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVK--ITVVAGEHNI 58

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAPLRYNRYVRPICLP--DVTET 161
                TEQ R V RI+ H  F  A  T  +D+ALL+L  PL  N YV PIC+   + T  
Sbjct: 59  EETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNI 118

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-YEDRIAD-VICAGMPQGGR 217
              + +    GWG VF  G     ++ ++VP++    C    +  I + + CAG  +GGR
Sbjct: 119 FLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGR 178

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           D+CQGDSGGP +      +G  ++ G++S GE CA   + G+YT+VS++V W+   
Sbjct: 179 DSCQGDSGGPHVTE---VEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEK 231

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score =  297 bits (763), Expect = e-102
 Identities = 81/237 (34%), Positives = 121/237 (51%), Gaps = 12/237 (5%)

Query: 46  VVGGKKAELGAWPWLIALYRDG---FFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG 101
           +VGG  +  G WPW + L+         CGG ++   W++TAAHC  G E      VY+G
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60

Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
           +L +           V  I++H  +K AE   D+ALL+L   + Y    RPI LP   E 
Sbjct: 61  ILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGER 120

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH--YEDRI-ADVICAGMPQGG 216
              Y+ C   GWG         + +++ ++P++    C+      +I   +ICAG  +GG
Sbjct: 121 NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGG 180

Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           +D C+GDSGGPL C        W++ G+ S GEGCA+   PGVYT V ++V W++  
Sbjct: 181 KDACKGDSGGPLSCKH---NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score =  296 bits (761), Expect = e-102
 Identities = 82/236 (34%), Positives = 133/236 (56%), Gaps = 13/236 (5%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGMLR 104
           +VGG + E G WPW  +L  DG   CG  +++ +W+++AAHC   ++    +    G+  
Sbjct: 1   IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTI 60

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
           +    P++  R + RI++H  +K      D++L +L++P+ Y   V  +CLPD +   +P
Sbjct: 61  K----PSKMKRGLRRIIVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQP 116

Query: 165 YSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK---HYEDRI-ADVICAGMPQGGRD 218
                  G+GA+   G   +H+R+ QV ++    C     Y D I   ++CAG  +G  D
Sbjct: 117 GDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKTD 176

Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNS 274
            CQGDSGGPL+     ++  WY+AG+VS G+ CA+PN+PGVYTRV+    W+ S +
Sbjct: 177 ACQGDSGGPLVS--SDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKT 230

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score =  301 bits (773), Expect = e-102
 Identities = 93/252 (36%), Positives = 130/252 (51%), Gaps = 17/252 (6%)

Query: 37  GNPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKH-- 94
           G   L   R+VGG+   LG WPW ++L  DG   CGG +L   WV+TAAHC     +   
Sbjct: 109 GRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLS 168

Query: 95  YFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT------NDLALLQLAAPLRYNR 148
            + V+AG + + S  P      V  +V H  +            ND+AL+ L++PL    
Sbjct: 169 RWRVFAGAVAQAS--PHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTE 226

Query: 149 YVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK---HYEDR 203
           Y++P+CLP   +       CT  GWG    +G     ++E +VPI+    C     Y ++
Sbjct: 227 YIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQ 286

Query: 204 I-ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQ-GRWYVAGVVSHGEGCARPNEPGVYT 261
           I   + CAG P+GG D CQGDSGGP +C    S+  RW + G+VS G GCA   +PGVYT
Sbjct: 287 IKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYT 346

Query: 262 RVSQFVPWLMSN 273
           +VS F  W+   
Sbjct: 347 KVSDFREWIFQA 358

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score =  295 bits (757), Expect = e-101
 Identities = 83/240 (34%), Positives = 122/240 (50%), Gaps = 14/240 (5%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFH-CGGVVLDESWVMTAAHCVDGFEKH------YFEV 98
           VVGG  A+ G WPW ++L+  G  H CG  ++  +W+++AAHC              +  
Sbjct: 1   VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60

Query: 99  YAGMLRRFSFS-PTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD 157
           + G+  +   S P  Q R + RI+ H  F       D+ALL+L  P  Y+  VRPI LPD
Sbjct: 61  FLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPD 120

Query: 158 VTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-YEDRIADV-ICAGMP 213
            +            GWG     G     +++ ++ ++    C++    +I    +C G  
Sbjct: 121 ASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQITPRMMCVGFL 180

Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
            GG D+CQGDSGGPL      + GR + AGVVS G+GCA+ N+PGVYTR+  F  W+  N
Sbjct: 181 SGGVDSCQGDSGGPLSS--VEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN 238

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score =  295 bits (758), Expect = e-101
 Identities = 79/241 (32%), Positives = 116/241 (48%), Gaps = 16/241 (6%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKH-YFEVYAGMLR 104
           +VGGK    G  PW + L  +G   CGG +++  WV++AAHC D  +         G   
Sbjct: 1   IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHD 60

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVT---ET 161
                  EQ R V+++++ S +      +D+ALL+L  P+    +V P+CLP+ T    T
Sbjct: 61  LSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERT 120

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRIADV-------ICAGM 212
                     GWG + + G     +  + VP L    C     ++ D         CAG 
Sbjct: 121 LAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGY 180

Query: 213 PQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
             G +D+C+GDSGGP        +G WY+ G+VS G+GCA     GVYTRVSQ++ WL  
Sbjct: 181 SDGSKDSCKGDSGGPHATHY---RGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQK 237

Query: 273 N 273
            
Sbjct: 238 L 238

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score =  306 bits (785), Expect = e-101
 Identities = 82/240 (34%), Positives = 123/240 (51%), Gaps = 12/240 (5%)

Query: 43  SGRVVGGKKAELGAWPWLIALYRDG---FFHCGGVVLDESWVMTAAHCVDGFEK-HYFEV 98
             R+VGG  +  G WPW + L+         CGG ++   W++TAAHC  G E      V
Sbjct: 385 KPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRV 444

Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV 158
           Y+G+L +           V  I++H  +K AE   D+ALL+L   + Y    RPICLP  
Sbjct: 445 YSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSK 504

Query: 159 TETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH--YEDRI-ADVICAGMP 213
            +    Y+ C   GWG         + +++ ++P++    C+      +I   +ICAG  
Sbjct: 505 GDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYR 564

Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           +GG+D C+GDSGGPL C        W++ G+ S GEGCA+   PGVYT V ++V W++  
Sbjct: 565 EGGKDACKGDSGGPLSCKH---NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 621

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score =  293 bits (752), Expect = e-100
 Identities = 74/236 (31%), Positives = 117/236 (49%), Gaps = 13/236 (5%)

Query: 46  VVGGKKAELGAWPWLIALY-RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           +VGG++ + G  PW   L   +    CGG +L E +++TAAHC+  ++   F+V  G   
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCL--YQAKRFKVRVGDRN 58

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV---TET 161
                  E V  V  ++ H+ F +     D+A+L+L  P+ +   V P CLP+      T
Sbjct: 59  TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAEST 118

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-YEDRIAD-VICAGMPQGGR 217
                T    G+G   E G     ++ ++VP +   +CK      I   + CAG      
Sbjct: 119 LMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQE 178

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           D CQGDSGGP +      +  ++V G+VS GEGCAR  + G+YT+V+ F+ W+  +
Sbjct: 179 DACQGDSGGPHVTR---FKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 231

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score =  292 bits (750), Expect = e-100
 Identities = 87/239 (36%), Positives = 128/239 (53%), Gaps = 18/239 (7%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGF-EKHYFEVYAGMLR 104
           + GG  A  G WPW +++  +G   CGG ++ E WV++AAHC      K  +EV  G  +
Sbjct: 1   ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQ 60

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
             S+S   +V  +  I+ H  + +     D+ALLQL+ P+ ++RY+RPI LP    +   
Sbjct: 61  LDSYSEDAKVSTLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPN 120

Query: 165 YSTCTAVGWGAVFEHG--PDPDHMREVQVPILP--ACKHYEDRIA----------DVICA 210
              CT  GWG V        P  +++++VP++    C    +  A          D++CA
Sbjct: 121 GLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCA 180

Query: 211 GMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
           G  +GG+D CQGDSGGPL CPV   +G WY+ G+VS G+ C   N PGVYT  S +  W
Sbjct: 181 GYVEGGKDACQGDSGGPLSCPV---EGLWYLTGIVSWGDACGARNRPGVYTLASSYASW 236

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score =  290 bits (745), Expect = 1e-99
 Identities = 92/241 (38%), Positives = 132/241 (54%), Gaps = 17/241 (7%)

Query: 46  VVGGKKAELGAWPWLIALYRD----GFFHCGGVVLDESWVMTAAHCVDGFEKH---YFEV 98
           +VGG  A LG +P+ ++         F  CG  + +E++ +TA HCV G +       ++
Sbjct: 1   IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQI 60

Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV 158
            AG L       +EQ+  VS+I++H  F    + ND++LL+L+  L +N  V PI LP  
Sbjct: 61  VAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALP-- 118

Query: 159 TETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH--YEDRIADV-ICAGMP 213
            +           GWG   E G  PD +++V VP++    C+     D I D  ICAG+P
Sbjct: 119 EQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAGVP 178

Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           +GG+D+CQGDSGGPL        G  Y+AG+VS G GCARP  PGVYT VS  V W+ +N
Sbjct: 179 EGGKDSCQGDSGGPLAAS---DTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKAN 235

Query: 274 S 274
           +
Sbjct: 236 A 236

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score =  284 bits (730), Expect = 3e-97
 Identities = 75/238 (31%), Positives = 111/238 (46%), Gaps = 14/238 (5%)

Query: 46  VVGGKKAELGAWPWLIALYRD--GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGML 103
           +VGG +A    +PW +++ R       CGG ++++ WV+ AAHC+ G       +  G  
Sbjct: 1   IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEH 60

Query: 104 RRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE 163
              + S   Q   V  I ++  +  A + ND+++++ A  + ++  V PIC PD      
Sbjct: 61  DSSAASTVRQTHDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPDPANDY- 119

Query: 164 PYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACK--HYEDRIADV-ICAGMPQG-- 215
            Y      GWG +   G   P  +R V + I     C   +  D I D  ICA    G  
Sbjct: 120 VYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDTIYDDMICATDNTGMT 179

Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
            RD+CQGDSGGPL        G + + G+VS G GCA    PGVY+RV     W+   
Sbjct: 180 DRDSCQGDSGGPLSV--KDGSGIFSLVGIVSWGIGCAS-GYPGVYSRVGFHAGWITDT 234

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score =  286 bits (733), Expect = 4e-97
 Identities = 75/249 (30%), Positives = 118/249 (47%), Gaps = 17/249 (6%)

Query: 38  NPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGF-EKHYF 96
                  R++GG  +  G+ PWL A+Y  G   C G ++   WV++AAHC      +   
Sbjct: 28  KRTFLRPRIIGGSSSLPGSHPWLAAIYI-GDSFCAGSLVHTCWVVSAAHCFSHSPPRDSV 86

Query: 97  EVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAE-MTNDLALLQLAAP----LRYNRYVR 151
            V  G       +   Q   + + + ++++       +DL L++L          +++V+
Sbjct: 87  SVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQ 146

Query: 152 PICLPDVTETPEPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILPA--CK---HYEDRI- 204
           PICLP+   T      C   GWG + E+       +RE  VP++    C     Y   I 
Sbjct: 147 PICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADIS 206

Query: 205 ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS 264
            +++CAG      D CQGDSGGPL C      G  Y+ G++S G+GC R ++PGVYTRV+
Sbjct: 207 PNMLCAGYFDCKSDACQGDSGGPLACEK---NGVAYLYGIISWGDGCGRLHKPGVYTRVA 263

Query: 265 QFVPWLMSN 273
            +V W+   
Sbjct: 264 NYVDWINDR 272

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score =  282 bits (725), Expect = 1e-96
 Identities = 78/235 (33%), Positives = 121/235 (51%), Gaps = 17/235 (7%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG  A  G +P+++++ R+G   CGG +L+ + V+TAAHCV G+ +  F++ AG L R
Sbjct: 1   IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSR 60

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
              +       +S + +H  +      NDLA+L+L+  +     +    L      P   
Sbjct: 61  ---TSGGITSSLSSVRVHPSYSG--NNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAG 115

Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH--YEDRIADV-ICAGMPQGGRDT 219
           S+ T  GWGA  E G   P ++ +V VPI+    C+       I +   CAG+  GG+D+
Sbjct: 116 SSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDS 175

Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNS 274
           CQGDSGGP++           + G VS G GCARPN  GVY  V     ++ + +
Sbjct: 176 CQGDSGGPIVD------SSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTYA 224

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score =  283 bits (726), Expect = 1e-96
 Identities = 86/242 (35%), Positives = 125/242 (51%), Gaps = 18/242 (7%)

Query: 39  PILGSGRVVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYF 96
           P    GRVVGG  A   +WPW ++L  R G   CGG ++   WV+TAAHC++   +   +
Sbjct: 11  PKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSY 70

Query: 97  EVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLP 156
           +V  G  +  +  P  Q   VSR+ +           D+ALL+L++P      V P CLP
Sbjct: 71  KVILGAHQEVNLEPHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLP 124

Query: 157 DVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK---HYEDRI-ADVICA 210
                    + C   GWG   +       ++E Q+P++    C        R+ +  +CA
Sbjct: 125 SPNYVVADRTECFITGWGET-QGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCA 183

Query: 211 GMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           G   GG D+CQGD+GGPL+C     + ++ + GV S G GCARPN+PGVY RVS+FV W+
Sbjct: 184 GHLAGGTDSCQGDAGGPLVCFE---KDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 240

Query: 271 MS 272
             
Sbjct: 241 EG 242

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score =  282 bits (725), Expect = 2e-96
 Identities = 80/234 (34%), Positives = 125/234 (53%), Gaps = 14/234 (5%)

Query: 42  GSGRVVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYA 100
           G  R+V G++A  G+WPW ++L  + GF  CGG +++E+WV+TAAHC          V A
Sbjct: 12  GLSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHC---GVTTSDVVVA 68

Query: 101 GMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE 160
           G   + S S   Q   ++++  +S +    + ND+ LL+L+    +++ V  +CLP  ++
Sbjct: 69  GEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASD 128

Query: 161 TPEPYSTCTAVGWGAV-FEHGPDPDHMREVQVPILP--ACKH-YEDRIADV-ICAGMPQG 215
                +TC   GWG   + +   PD +++  +P+L    CK  +  +I D  ICAG    
Sbjct: 129 DFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAG--AS 186

Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
           G  +C GDSGGPL+C      G W + G+VS G      + PGVY RV+  V W
Sbjct: 187 GVSSCMGDSGGPLVCKK---NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNW 237

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score =  282 bits (723), Expect = 5e-96
 Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 26/250 (10%)

Query: 46  VVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEKH---------- 94
           +  G+ A+ G  PW+  L + +G   CGG +L  SW++TAAHC+                
Sbjct: 1   IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60

Query: 95  ----YFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYV 150
                F++  G   R      EQ   V    +H  +      ND+AL++L      N +V
Sbjct: 61  LSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFV 120

Query: 151 RPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH----YEDRI 204
            PICLP+     +  +     GWG  F     P+ + E+++PI+    C+      + ++
Sbjct: 121 MPICLPE--GPQQEGAMVIVSGWGKQFL-QRFPETLMEIEIPIVDHSTCQKAYAPLKKKV 177

Query: 205 -ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRV 263
             D+ICAG  +GG+D C GDSGGP++      +G+WY+ G VS G+ C + +  GVY+ +
Sbjct: 178 TRDMICAGEKEGGKDACAGDSGGPMVTLNR-ERGQWYLVGTVSWGDDCGKKDRYGVYSYI 236

Query: 264 SQFVPWLMSN 273
                W+   
Sbjct: 237 HHNKDWIQRV 246

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score =  280 bits (718), Expect = 2e-95
 Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 19/242 (7%)

Query: 46  VVGGKKAELGAWPWLIALYR-DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           ++ GK    G  PW + L        CG V++  SWV+TAAHC+D  +K    V  G   
Sbjct: 1   LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKK--LLVRLGEYD 58

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD----VTE 160
              +   E    +  + +H  + ++   ND+ALL LA P   ++ + PICLPD      E
Sbjct: 59  LRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERE 118

Query: 161 TPEPYSTCTAVGWGAVFEHGPD-----PDHMREVQVPILP--ACKH-YEDRI-ADVICAG 211
             +        GWG       +        +  +++P++P   C     + +  +++CAG
Sbjct: 119 LNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAG 178

Query: 212 MPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLM 271
           +    +D C+GDSGGP++       G W++ G+VS GEGC   +  GVYT+VS+++ W+ 
Sbjct: 179 ILGDRQDACEGDSGGPMVASF---HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIH 235

Query: 272 SN 273
            +
Sbjct: 236 GH 237

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score =  279 bits (716), Expect = 4e-95
 Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 17/241 (7%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFE-KHYFEVYAGMLR 104
           ++GG  +  G+ PWL A+Y  G   C G ++   WV++AAHC      +    V  G   
Sbjct: 1   IIGGSSSLPGSHPWLAAIYI-GDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHF 59

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAE-MTNDLALLQLAAP----LRYNRYVRPICLPDVT 159
               +   Q   + + + ++++       +DL L++L          +++V+PICLP+  
Sbjct: 60  FNRTTDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPG 119

Query: 160 ETPEPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP-----ACKHYEDRI-ADVICAGM 212
            T      C   GWG + E+       +RE  VP++      + + Y   I  +++CAG 
Sbjct: 120 STFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGY 179

Query: 213 PQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
                D CQGDSGGPL C      G  Y+ G++S G+GC R ++PGVYTRV+ +V W+  
Sbjct: 180 FDCKSDACQGDSGGPLACEK---NGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWIND 236

Query: 273 N 273
            
Sbjct: 237 R 237

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score =  278 bits (714), Expect = 3e-94
 Identities = 81/248 (32%), Positives = 125/248 (50%), Gaps = 21/248 (8%)

Query: 46  VVGGKKAELGAWPWLIALY------RDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEV 98
           ++GG+ A  GAWPW+++L          +  CGG +L+  W++TAAHC    +K   + +
Sbjct: 1   IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRL 60

Query: 99  YAGMLRR-----FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPI 153
             G             P  Q R V +I++H  +  +   ND+AL+++  P+    ++ P 
Sbjct: 61  IFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPG 120

Query: 154 CLPDVTET-PEPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACK---HYEDRI-A 205
           CLP      P    TC   GWG + E+       ++E +V ++    C     Y  RI +
Sbjct: 121 CLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGRIRS 180

Query: 206 DVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQ 265
             +CAG P+G  DTCQGDSGGPL+C    ++  + V G+ S G GCAR   PGVYT    
Sbjct: 181 TNVCAGYPEGKIDTCQGDSGGPLMCKDS-AENSYVVVGITSWGVGCARAKRPGVYTSTWS 239

Query: 266 FVPWLMSN 273
           ++ W+ S 
Sbjct: 240 YLNWIASK 247

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score =  275 bits (706), Expect = 6e-94
 Identities = 79/228 (34%), Positives = 118/228 (51%), Gaps = 18/228 (7%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG + +  + P  ++L   G+  CGG +++E+WV++AAHC         EV  G    
Sbjct: 1   IVGGYECKAYSQPHQVSLNS-GYHFCGGSLVNENWVVSAAHCYKS----RVEVRLGEHNI 55

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                +EQ    SR++ H  +    + ND+ L++L+ P   N YV+P+ LP  T      
Sbjct: 56  KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP--TSCAPAG 113

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-YEDRIADV-ICAGMPQGGRDTCQ 221
           + CT  GWG       D + ++ + +PIL    C + Y   I +   CAG  +GG+D+CQ
Sbjct: 114 TMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQ 173

Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
           GDSGGP++C          + GVVS G GCA P  PGVY +V  F  W
Sbjct: 174 GDSGGPVVC-------NGELQGVVSWGYGCAEPGNPGVYAKVCIFNDW 214

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score =  275 bits (706), Expect = 2e-93
 Identities = 78/247 (31%), Positives = 129/247 (52%), Gaps = 22/247 (8%)

Query: 46  VVGGKKAELGAWPWLIALYR-----DGFFHCGGVVLDESWVMTAAHCVDGF-EKHYFEVY 99
           ++GG+   +   PW  A+YR        + CGG ++   WV++A HC   + +K  + VY
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60

Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAP----LRYNRYVRPI 153
            G  R  S +  E    V  +++H  +    +   ND+ALL++ +      + +R ++ I
Sbjct: 61  LGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTI 120

Query: 154 CLPDVTETPEPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACK---HYEDRIADV 207
            LP +   P+  ++C   G+G         P+ ++   V ++    C+   +Y   +   
Sbjct: 121 SLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTK 180

Query: 208 -ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQF 266
            +CA  PQ   D+CQGDSGGPL+C +   QGR  + G+VS G GCA  ++PGVYTRVS F
Sbjct: 181 MLCAADPQWKTDSCQGDSGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRVSHF 237

Query: 267 VPWLMSN 273
           +PW+ S+
Sbjct: 238 LPWIRSH 244

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score =  286 bits (732), Expect = 2e-93
 Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 11/239 (4%)

Query: 43  SGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
             R+VGGK+A+LG  PW +A+       CGG+ +   W++TAAHC+   + H ++++  +
Sbjct: 319 RKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRASKTHRYQIWTTV 378

Query: 103 LRRFSFS-PTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYN----RYVRPICLPD 157
           +           +  V RI+ H  +      ND+AL+++               P C+P 
Sbjct: 379 VDWIHPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVPW 438

Query: 158 VTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKH-YEDRI--ADVICAGMPQ 214
                +P  TC   GWG   ++      ++  +V ++  C   Y +R    ++ CAG   
Sbjct: 439 SPYLFQPNDTCIVSGWGREKDNER-VFSLQWGEVKLISNCSKFYGNRFYEKEMECAGTYD 497

Query: 215 GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           G  D C+GDSGGPL+C    +    YV GVVS GE C +P  PGVYT+V+ +  W+  +
Sbjct: 498 GSIDACKGDSGGPLVC--MDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWISYH 554

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score =  274 bits (704), Expect = 3e-93
 Identities = 78/246 (31%), Positives = 109/246 (44%), Gaps = 22/246 (8%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFF---HCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           V+GG  A  G +PW ++  R        CG  +L  +  ++A+HCVDG   +   V AG+
Sbjct: 1   VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGL 60

Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKR--AEMTNDLALLQLAAPLRYNRYVRPICLPDVTE 160
            ++   S T Q   V    MH  +    A  +ND+A+L LA  +     ++   LP    
Sbjct: 61  WQQSDTSGT-QTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNN 119

Query: 161 TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK-----HYEDRIADV-ICAGM 212
                +TC   GWG        PD +++  +P++    C           I D  IC   
Sbjct: 120 NDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQD 179

Query: 213 PQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVS----HGEGCARPNEPGVYTRVSQFVP 268
           P G    C GDSGGPL CP     G   V GV S     G G   P+ P VYTRVS ++ 
Sbjct: 180 PAGNTGACNGDSGGPLNCP----DGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLG 235

Query: 269 WLMSNS 274
           W+  NS
Sbjct: 236 WIGDNS 241

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score =  273 bits (700), Expect = 7e-93
 Identities = 80/230 (34%), Positives = 117/230 (50%), Gaps = 17/230 (7%)

Query: 46  VVGGKKAELGAWPWLIALY-RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           +VGG   + G  PW   L   +    CGG +L E +++TAAHC+   +   F+V  G   
Sbjct: 1   IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLY--QAKRFKVRVGDRN 58

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
                  E V  V  ++ H+ F +     D+A+L+L  P+ +   V P  LP  T  P  
Sbjct: 59  TEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLP--TAPPAT 116

Query: 165 YSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRIADV-ICAGMPQGGRDT 219
            + C   GWG     G D PD ++ +  P+L    C+  Y  +I     C G  +GG+D+
Sbjct: 117 GTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDS 176

Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
           CQGDSGGP++C          + GVVS G+GCA+ N+PGVYT+V  +V W
Sbjct: 177 CQGDSGGPVVC-------NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKW 219

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score =  273 bits (701), Expect = 9e-93
 Identities = 74/252 (29%), Positives = 118/252 (46%), Gaps = 27/252 (10%)

Query: 46  VVGGKKAELGAWPWLIALYRDGF------FHCGGVVLDESWVMTAAHCVDGFEK-HYFEV 98
           + GG  A++ + PW  A++          F CGG+++   W+++AAHC       H+  V
Sbjct: 1   IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTV 60

Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPL----RYNRYVRPIC 154
             G   R      EQ   V + ++H  F      ND+ALLQL +      + +  VR +C
Sbjct: 61  ILGRTYRVVPGEEEQKFEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVC 120

Query: 155 LPDVTETPEPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACK---HYEDRI-ADV 207
           LP        ++ C   G+G      P   + ++E  V + P   C         +  ++
Sbjct: 121 LPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNM 180

Query: 208 ICAGMPQGG------RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYT 261
           +CAG  + G       D CQGDSGGPL+C      GR  + G++S G GC + + PGVYT
Sbjct: 181 LCAGDTRSGGPQANLHDACQGDSGGPLVCLN---DGRMTLVGIISWGLGCGQKDVPGVYT 237

Query: 262 RVSQFVPWLMSN 273
           +V+ ++ W+  N
Sbjct: 238 KVTNYLDWIRDN 249

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score =  272 bits (698), Expect = 1e-92
 Identities = 76/229 (33%), Positives = 114/229 (49%), Gaps = 19/229 (8%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     K   +V  G    
Sbjct: 1   IVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +    + ND+ L++L +    N  V  I LP  T      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLP--TSCASAG 113

Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--AC-KHYEDRIADV-ICAGMPQGGRDTC 220
           + C   GWG     G   PD ++ ++ PIL   +C   Y  +I     CAG  +GG+D+C
Sbjct: 114 TQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSC 173

Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
           QGDSGGP++C          + G+VS G GCA+ N+PGVYT+V  +V W
Sbjct: 174 QGDSGGPVVC-------SGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSW 215

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score =  273 bits (700), Expect = 1e-92
 Identities = 71/245 (28%), Positives = 113/245 (46%), Gaps = 25/245 (10%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHY-----FEVYA 100
           ++GG+KA++G +PW +     G    GG +L + W++TAAH +   E         +V+ 
Sbjct: 1   IIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFL 58

Query: 101 GMLRRFSFSPTEQVRPVSRIVMHSMFKRAE---MTNDLALLQLAAPLRYNRYVRPICLPD 157
           G              P+ R+ +H  +++ E      D+ALL+L   +     + PICLPD
Sbjct: 59  GHTNVEELMK-LGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPD 117

Query: 158 VTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH------YEDRI-ADVI 208
                +        G+G + E       +R V++P+    AC++        D    ++ 
Sbjct: 118 NDTFYDLGLMGYVSGFGVMEEKI--AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMF 175

Query: 209 CAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVP 268
           CAG P   +D CQGDSGG      P +  RW   G+VS G GC+R    G YT+V  +V 
Sbjct: 176 CAGHPSLKQDACQGDSGGVFAVRDPNT-DRWVATGIVSWGIGCSRG--YGFYTKVLNYVD 232

Query: 269 WLMSN 273
           W+   
Sbjct: 233 WIKKE 237

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score =  273 bits (701), Expect = 1e-92
 Identities = 71/244 (29%), Positives = 108/244 (44%), Gaps = 19/244 (7%)

Query: 43  SGRVVGGKKAELGAWPWLIAL----YRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEV 98
           S RVVGG+ A   +WPW I+L           CGG ++  + V+TAAHC+       + V
Sbjct: 11  SARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISN--TLTYRV 68

Query: 99  YAGMLRRFSFS-PTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD 157
             G                V  I +H  +    + ND+AL++LA  +     ++  CLP 
Sbjct: 69  ALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPS 128

Query: 158 VTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK---HYEDRI-ADVICAG 211
                     C   GWG ++ +GP    +++   P++    C     +   +   ++CAG
Sbjct: 129 EGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAG 188

Query: 212 MPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVS--HGEGCARPNEPGVYTRVSQFVPW 269
              G    C GDSGGPL C      G+W V G+VS   G  C    +P V+TRVS ++ W
Sbjct: 189 -GDGVISACNGDSGGPLNCQA---DGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDW 244

Query: 270 LMSN 273
           +   
Sbjct: 245 INQK 248

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score =  272 bits (699), Expect = 2e-92
 Identities = 66/236 (27%), Positives = 112/236 (47%), Gaps = 19/236 (8%)

Query: 45  RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGML 103
            ++GGK+    + P++ ++   G   CGGV++D  WV+TAAHC   F K     V  G  
Sbjct: 2   EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAH 61

Query: 104 RRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE 163
                  ++Q   + + +  S       +ND+ L++L    + N++V+ + +   T    
Sbjct: 62  SLSKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLR- 120

Query: 164 PYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACK---HYEDRIA---DVICAGMPQ 214
             + C   GWGA         D +REV V +L    C    +Y        D++CAG  +
Sbjct: 121 SGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAK 180

Query: 215 GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQ-FVPW 269
           G +D+C+GD+GGPL+C       +     +VS G  C    +PG+YT +++ +  W
Sbjct: 181 GQKDSCKGDAGGPLIC-------KGVFHAIVSGGHECGVATKPGIYTLLTKKYQTW 229

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score =  272 bits (698), Expect = 2e-92
 Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 22/244 (9%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDG--FEKHYFEVYAGML 103
           + GG+KA+ G +PW + +   G     G +L ++WV+TAAH V     +    ++  G L
Sbjct: 1   IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTL 58

Query: 104 RRFSFSPTEQVRPVSRIVMHSMFKRAE-MTNDLALLQLAAPLRYNRYVRPICLP--DVTE 160
           +R   SP         + +H  +       ND+AL++L   +  N  + PICLP  +   
Sbjct: 59  KR--LSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAES 116

Query: 161 TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-------YEDRI-ADVICA 210
                   TA GWG   + G    ++  V +PI+    C             + A+++CA
Sbjct: 117 FMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCA 175

Query: 211 GMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPW 269
           G+  GG+D+C+GDSGG L+     +  RW+V G+VS G   C    + GVYT+V  ++PW
Sbjct: 176 GLESGGKDSCRGDSGGALVFLDSET-ERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPW 234

Query: 270 LMSN 273
           + + 
Sbjct: 235 IENI 238

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score =  275 bits (705), Expect = 3e-92
 Identities = 73/253 (28%), Positives = 116/253 (45%), Gaps = 25/253 (9%)

Query: 38  NPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHY-- 95
           NP+    R++GG+KA++G +PW +     G    GG +L + W++TAAH +   E     
Sbjct: 82  NPVEQRQRIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILTAAHTLYPKEHEAQS 139

Query: 96  ---FEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT---NDLALLQLAAPLRYNRY 149
               +V+ G              P+ R+ +H  +++ E      D+ALL+L   +     
Sbjct: 140 NASLDVFLGHTNVEELMK-LGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPN 198

Query: 150 VRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH------YE 201
           + PICLPD     +        G+G +         +R V++P+    AC++        
Sbjct: 199 LLPICLPDNDTFYDLGLMGYVSGFGVM--EEKIAHDLRFVRLPVANPQACENWLRGKNRM 256

Query: 202 DRI-ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVY 260
           D    ++ CAG P   +D CQGDSGG      P +  RW   G+VS G GC+R    G Y
Sbjct: 257 DVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNT-DRWVATGIVSWGIGCSRG--YGFY 313

Query: 261 TRVSQFVPWLMSN 273
           T+V  +V W+   
Sbjct: 314 TKVLNYVDWIKKE 326

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score =  270 bits (693), Expect = 1e-91
 Identities = 82/241 (34%), Positives = 129/241 (53%), Gaps = 19/241 (7%)

Query: 46  VVGGKKAELGAWPWLIALYRDG---FFH-CGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           VVGG+ A   +WPW ++L  D    + H CGG ++D+SWV+TAAHC+       + V  G
Sbjct: 1   VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISS--SRTYRVVLG 58

Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAPLRYNRYVRPICLPDVT 159
                +  P      VS++V+H  +   +++  ND+ALL+LA+P+     ++  CLP   
Sbjct: 59  RHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAG 118

Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK---HYEDRI-ADVICAGMP 213
                   C   GWG +  +G  PD +++ Q+ ++    C     +   +  ++ICAG  
Sbjct: 119 TILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAG-G 177

Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWLM 271
            G   +C GDSGGPL C   G+ G+W V G+VS G   GC   ++P V+TRVS ++ W+ 
Sbjct: 178 DGIISSCNGDSGGPLNC--QGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWIN 235

Query: 272 S 272
           S
Sbjct: 236 S 236

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score =  269 bits (691), Expect = 1e-91
 Identities = 75/234 (32%), Positives = 108/234 (46%), Gaps = 20/234 (8%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKH-YFEVYAGMLR 104
           VVGG +A  G +P+++ L       CGG +  +  V+TAAHCV G   +       G++ 
Sbjct: 1   VVGGTRAAQGEFPFMVRLS----MGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
             S   +      ++++    F +     D AL++LA P+      +P      T     
Sbjct: 57  LQS--SSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPIN-----QPTLKIATTTAY-N 108

Query: 165 YSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK--HYEDRIAD-VICAGMPQGGRDT 219
             T T  GWGA  E G    ++ +  VP +   AC+       +A+ +ICAG      DT
Sbjct: 109 QGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYDTKQEDT 168

Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           CQGDSGGP+          W   G+VS GEGCAR  + GVYT VS F   + S 
Sbjct: 169 CQGDSGGPMFRKDNA--DEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASA 220

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score =  269 bits (691), Expect = 2e-91
 Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 16/231 (6%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG++AE  A P++ ++  +G   CGGV++ E WV++AAHC++       +V  G    
Sbjct: 1   ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 60

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               P++++  V R V H   +   + +DL LLQL+        VRP+    V     P 
Sbjct: 61  SQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPG 120

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK---HYEDRIADV-ICAGMPQGGRDT 219
           + C   GWG V   G  PD ++ V +P+L    C    H++  I +  +CA      RD+
Sbjct: 121 TLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAE--SNRRDS 178

Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPW 269
           C+GD+GGPL+C          + GVV+ G   C    +PG+YTRV+ +  W
Sbjct: 179 CKGDAGGPLVC-------GGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAW 222

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score =  267 bits (686), Expect = 7e-91
 Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 19/229 (8%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +V G   +  + P+  ALY  G   CGGV++   WV+TAAHC     K   +V+ G    
Sbjct: 1   LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCK----KPNLQVFLGKHNL 56

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                +++   V R V+H  +  A    D+ LL+LA P + +  ++P+ L    +     
Sbjct: 57  RQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLE--RDCSANT 114

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-YEDRIADV-ICAGMPQGGRDTCQ 221
           ++C  +GWG     G  PD ++   + ++    C+H Y  +I    +CAG  + G+D+CQ
Sbjct: 115 TSCHILGWGKT-ADGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQ 173

Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPW 269
           GDSGGPL+C         ++ G+VS G   C    +PGVYT V ++  W
Sbjct: 174 GDSGGPLVC-------GDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNW 215

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score =  274 bits (702), Expect = 7e-91
 Identities = 73/253 (28%), Positives = 117/253 (46%), Gaps = 25/253 (9%)

Query: 38  NPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHY-- 95
           NP+    +++GG+KA++G +PW +     G    GG +L + W++TAAH +   E     
Sbjct: 150 NPVEQRQQIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILTAAHTLYPKEHEAQS 207

Query: 96  ---FEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT---NDLALLQLAAPLRYNRY 149
               +V+ G              P+ R+ +H  +++ E      D+ALL+L   +     
Sbjct: 208 NASLDVFLGHTNV-EELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPN 266

Query: 150 VRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK------HYE 201
           + PICLPD     +        G+G + E       +R V++P+    AC+      +  
Sbjct: 267 LLPICLPDNDTFYDLGLMGYVSGFGVMEEKI--AHDLRFVRLPVANPQACENWLRGKNRM 324

Query: 202 DRI-ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVY 260
           D    ++ CAG P   +D CQGDSGG      P +  RW   G+VS G GC+R    G Y
Sbjct: 325 DVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNT-DRWVATGIVSWGIGCSRG--YGFY 381

Query: 261 TRVSQFVPWLMSN 273
           T+V  +V W+   
Sbjct: 382 TKVLNYVDWIKKE 394

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score =  268 bits (687), Expect = 1e-90
 Identities = 82/238 (34%), Positives = 119/238 (50%), Gaps = 20/238 (8%)

Query: 46  VVGGKKAELGAWPWLIALYRDG---FFH-CGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           VVGG +A+  +WP  I+L       + H CGG ++ ++WVMTAAHCVD   +  F V  G
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDR--ELTFRVVVG 58

Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAPLRYNRYVRPICLPDVT 159
                  + TEQ   V +IV+H  +   ++    D+ALL+LA  +  N YV+   LP   
Sbjct: 59  EHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAG 118

Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK---HYEDRI-ADVICAGMP 213
                 S C   GWG    +G     +++  +P +    C    ++   +   ++CAG  
Sbjct: 119 TILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-G 177

Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPW 269
            G R  CQGDSGGPL C V    G++ V GV S     GC    +P V+TRVS ++ W
Sbjct: 178 DGVRSGCQGDSGGPLHCLV---NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISW 232

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score =  267 bits (686), Expect = 1e-90
 Identities = 78/238 (32%), Positives = 115/238 (48%), Gaps = 21/238 (8%)

Query: 46  VVGGKKAELGAWPWLIALYRDG---FFH-CGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           VVGG+ A+  +WPW I+L       ++H CGG ++ + WVMTAAHCVD      + V  G
Sbjct: 1   VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDS--ARTWRVVLG 58

Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT--NDLALLQLAAPLRYNRYVRPICLPDVT 159
                +    EQ+  V+ + +HS +   ++    D+ALL+L      N  V+   LP   
Sbjct: 59  EHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSN 118

Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK---HYEDRI-ADVICAGMP 213
           +     + C   GWG     GP  D +++  +P +    C     +   +   ++CAG  
Sbjct: 119 QILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCAG-- 176

Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVS--HGEGCARPNEPGVYTRVSQFVPW 269
            G    C GDSGGPL C V    G +YV GV S     GC    +P V+TRVS ++ W
Sbjct: 177 GGANSGCNGDSGGPLNCQV---NGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISW 231

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score =  269 bits (689), Expect = 2e-90
 Identities = 79/260 (30%), Positives = 121/260 (46%), Gaps = 27/260 (10%)

Query: 43  SGRVVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKH 94
            GR+V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++
Sbjct: 28  DGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 87

Query: 95  YFEVYAGMLRRFSFSP-TEQVRPVSRIVMHSMFKRAE-MTNDLALLQLAAPLRYNRYVRP 152
              V  G   R  +    E++  + +I +H  +   E +  D+AL++L  P+ ++ Y+ P
Sbjct: 88  DLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP 147

Query: 153 ICLPDVTETPEPY---STCTAVGWGAVFEH------GPDPDHMREVQVPILP--ACKH-Y 200
           +CLPD                 GWG + E          P  ++ V +PI+    CK   
Sbjct: 148 VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST 207

Query: 201 EDRI-ADVICAGMPQ---GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNE 256
             RI  ++ CAG         D C+GDSGGP +   P    RWY  G+VS GEGC R  +
Sbjct: 208 RIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSP-FNNRWYQMGIVSWGEGCDRDGK 266

Query: 257 PGVYTRVSQFVPWLMSNSER 276
            G YT V +   W+    ++
Sbjct: 267 YGFYTHVFRLKKWIQKVIDQ 286

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score =  273 bits (699), Expect = 2e-90
 Identities = 74/251 (29%), Positives = 121/251 (48%), Gaps = 22/251 (8%)

Query: 39  PILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDG--FEKHYF 96
                G++ GG+KA+ G +PW + +   G     G +L ++WV+TAAH V     +    
Sbjct: 155 ARTTGGQIYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYEQKHDASAL 212

Query: 97  EVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAE-MTNDLALLQLAAPLRYNRYVRPICL 155
           ++  G L+R S  P         + +H  +       ND+AL++L   +  N  + PICL
Sbjct: 213 DIRMGTLKRLS--PHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICL 270

Query: 156 P--DVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-------YEDRI 204
           P  +           TA GWG   + G    ++  V +PI+    C             +
Sbjct: 271 PRKEAESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSV 329

Query: 205 -ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTR 262
            A+++CAG+  GG+D+C+GDSGG L+     +  RW+V G+VS G   C    + GVYT+
Sbjct: 330 TANMLCAGLESGGKDSCRGDSGGALVFLDSET-ERWFVGGIVSWGSMNCGEAGQYGVYTK 388

Query: 263 VSQFVPWLMSN 273
           V  ++PW+ + 
Sbjct: 389 VINYIPWIENI 399

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score =  267 bits (684), Expect = 3e-90
 Identities = 67/232 (28%), Positives = 103/232 (44%), Gaps = 19/232 (8%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM--L 103
           VV G         W+++L       CGG ++ ESWV+TA  C    +   +E + G+  +
Sbjct: 1   VVNGIPTR-TNIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDV 59

Query: 104 RRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE 163
                   +QV  VS++V           +DL L++LA P   + +V  I LP+   T  
Sbjct: 60  HGRGDEKCKQVLNVSQLVYGPEG------SDLVLMKLARPAVLDDFVSTIDLPNYGSTIP 113

Query: 164 PYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK---HYEDRI-ADVICAGMPQGGR 217
             ++C+  GWG           +R   + I+    C      +  +    ICAG  + G 
Sbjct: 114 EKTSCSVYGWGYT-GLINYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGS 172

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
             C+GD GGPL+C          V GV+  G GCA PN PG++ RV+ +  W
Sbjct: 173 GPCEGDYGGPLVCEQ---HKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKW 221

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score =  272 bits (696), Expect = 5e-90
 Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 28/262 (10%)

Query: 38  NPILGSGRVVGGK-KAELGAWPWLIALYRDGF--------FHCGGVVLDESWVMTAAHCV 88
           N      ++ G   +AE G +PW++A+ +             CGG ++  S V+T AHCV
Sbjct: 122 NERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCV 181

Query: 89  DGFEK--HYFEVYAGM--LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPL 144
           + ++      ++ AG             Q R + ++++HS F    + ND+ALL L  PL
Sbjct: 182 NSYQSNLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPL 241

Query: 145 RYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEH--GPDPDHMREVQVPILP--ACKH- 199
                +  ICLP  ++     + C A GWG           + ++++Q+P +    C+  
Sbjct: 242 VQADNIGTICLPQQSQIF-DSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQAD 300

Query: 200 -------YEDRIAD-VICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGC 251
                   +  +    +CAG  + G+DTC GD G PL CP P +  R+   G+V+ G GC
Sbjct: 301 LRNTRLGLKFVLDQTFVCAG-GEQGKDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGC 359

Query: 252 ARPNEPGVYTRVSQFVPWLMSN 273
              N PGVY  V+ F  W+   
Sbjct: 360 GDENVPGVYANVAHFRNWIDQE 381

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score =  267 bits (684), Expect = 5e-90
 Identities = 77/254 (30%), Positives = 117/254 (46%), Gaps = 27/254 (10%)

Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCV------DGFEKHYFE 97
           +V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++   
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60

Query: 98  VYAGMLRRFSFSP-TEQVRPVSRIVMHSMFKRAE-MTNDLALLQLAAPLRYNRYVRPICL 155
           V  G   R  +    E++  + +I +H  +   E +  D+AL++L  P+ ++ Y+ P+CL
Sbjct: 61  VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCL 120

Query: 156 PDVTETPEPY---STCTAVGWGAVFEH------GPDPDHMREVQVPILP--ACKH-YEDR 203
           PD                 GWG + E          P  ++ V +PI+    CK     R
Sbjct: 121 PDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIR 180

Query: 204 I-ADVICAGMPQ---GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGV 259
           I  ++ CAG         D C+GDSGGP +   P    RWY  G+VS GEGC R  + G 
Sbjct: 181 ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSP-FNNRWYQMGIVSWGEGCDRDGKYGF 239

Query: 260 YTRVSQFVPWLMSN 273
           YT V +   W+   
Sbjct: 240 YTHVFRLKKWIQKV 253

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score =  267 bits (685), Expect = 6e-90
 Identities = 66/260 (25%), Positives = 114/260 (43%), Gaps = 33/260 (12%)

Query: 43  SGRVVGGKKAELGAWPWLIAL-YRDGF----FHCGGVVLDESWVMTAAHCVDGFEKHY-- 95
           + +++ G       +PW   + Y++      F CGG +++  +++TAAHCV G       
Sbjct: 20  ADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAGRVLRVVG 79

Query: 96  --FEVYAG-----------MLRRFSFSPTEQVRPVSRIVMHSMFKRA--EMTNDLALLQL 140
              +V  G              R           +   + H  +     +  +D+AL++L
Sbjct: 80  ALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRL 139

Query: 141 AAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK 198
              + +  Y+RP+CLP   E  +     T VGWG   E G      +++ VP++    C 
Sbjct: 140 NRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRT-ETGQYSTIKQKLAVPVVHAEQCA 198

Query: 199 H----YEDRIAD-VICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCAR 253
                   R+    +CAG  +  +D+C GDSGGPLL        ++++ G+VS G  C  
Sbjct: 199 KTFGAAGVRVRSSQLCAG-GEKAKDSCGGDSGGPLLAERAN--QQFFLEGLVSFGATCGT 255

Query: 254 PNEPGVYTRVSQFVPWLMSN 273
              PG+YT+V ++  W+  N
Sbjct: 256 EGWPGIYTKVGKYRDWIEGN 275

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score =  265 bits (680), Expect = 1e-89
 Identities = 92/244 (37%), Positives = 126/244 (51%), Gaps = 28/244 (11%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFF---HCGGVVLDESWVMTAAHCVDGFEKH--YFEVYA 100
           +VGG++A    WPW ++L     +    CGG ++   WV+TAAHCV    K      V  
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQL 60

Query: 101 GMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE 160
                      +Q+ PVSRI++H  F   +   D+ALL+L  P+  +  V  + LP  +E
Sbjct: 61  REQHL---YYQDQLLPVSRIIVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASE 117

Query: 161 TPEPYSTCTAVGWGAVFEHG--PDPDHMREVQVPILP--ACKHYEDRIA----------- 205
           T  P   C   GWG V      P P  +++V+VPI+    C       A           
Sbjct: 118 TFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRD 177

Query: 206 DVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQ 265
           D++CAG     RD+CQGDSGGPL+C V    G W  AGVVS GEGCA+PN PG+YTRV+ 
Sbjct: 178 DMLCAG--NSQRDSCQGDSGGPLVCKV---NGTWLQAGVVSWGEGCAQPNRPGIYTRVTY 232

Query: 266 FVPW 269
           ++ W
Sbjct: 233 YLDW 236

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score =  264 bits (677), Expect = 2e-89
 Identities = 75/230 (32%), Positives = 113/230 (49%), Gaps = 21/230 (9%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++ G     G+ PW +AL      HCGGV+++E WV+TAAHC      + + V+ G    
Sbjct: 1   IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCK----MNEYTVHLGSDTL 56

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                  Q    S+   H  +      NDL L++L +  R +  V+ + LP  +    P 
Sbjct: 57  --GDRRAQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLP--SRCEPPG 112

Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRIADV-ICAGMPQGGRDTC 220
           +TCT  GWG         P  +  V V ++    C   Y+D + +  +CAG+P   ++ C
Sbjct: 113 TTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNAC 172

Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPW 269
            GDSGGPL+C       R  + G+VS G   C +PN+PGVYT+V +F  W
Sbjct: 173 NGDSGGPLVC-------RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKW 215

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score =  264 bits (678), Expect = 2e-89
 Identities = 63/232 (27%), Positives = 107/232 (46%), Gaps = 17/232 (7%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG++    + P++ +L R+G   CGGV++   WV+TAAHC+         +  G+   
Sbjct: 1   IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQRMAQL-RLVLGLHTL 59

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAE-MTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
                      +   + H  +K    + NDLALLQL   ++ +R +RP+ LP   +    
Sbjct: 60  ---DSPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAA 116

Query: 165 YSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK---HYEDRIADV-ICAGMPQGGRD 218
            + C+  GWG   + G     +RE+ + +L    C     +   ++   +C       + 
Sbjct: 117 GTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQA 176

Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPW 269
            C+GDSGGPL+C          +AGV+S     C    +P V T V+ +V W
Sbjct: 177 PCKGDSGGPLVC-----GKGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSW 223

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score =  264 bits (676), Expect = 4e-89
 Identities = 86/244 (35%), Positives = 124/244 (50%), Gaps = 30/244 (12%)

Query: 43  SGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +   V  +     + PW +A+YR   + CGGV+LD +WV+TAAHC        ++V+ G 
Sbjct: 1   AAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCY----NDKYQVWLGK 56

Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMT-----------NDLALLQLAAPLRYNRYVR 151
                  P++Q R VS+ + H  F  + +            NDL LL+L+ P      V+
Sbjct: 57  NNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVK 116

Query: 152 PICLPDVTETPEPYSTCTAVGWGAVFE-HGPDPDHMREVQVPILP--AC-KHYEDRIADV 207
           PI LP  TE P+  STC A GWG+        PD ++ V + +LP   C K +E ++ D 
Sbjct: 117 PITLP--TEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDA 174

Query: 208 -ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQ 265
            +CAG   GG  TC+ DSGGPL+C          + G+ S G E C  P EP VYT++ +
Sbjct: 175 MLCAGEMDGGSYTCEHDSGGPLIC-------DGILQGITSWGPEPCGEPTEPSVYTKLIK 227

Query: 266 FVPW 269
           F  W
Sbjct: 228 FSSW 231

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score =  264 bits (676), Expect = 4e-89
 Identities = 89/250 (35%), Positives = 128/250 (51%), Gaps = 34/250 (13%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           VVGG   E  + PW +A+Y      CGGV+LD +WV+TAAHC        +EV+ G  + 
Sbjct: 1   VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCY----VDQYEVWLGKNKL 56

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMT-----------NDLALLQLAAPLRYNRYVRPIC 154
           F   P+ Q R VS+   H  F  + +            +DL LL+L+ P      V+PI 
Sbjct: 57  FQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIA 116

Query: 155 LPDVTETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPILP--ACKH-YEDRIADV-IC 209
           LP  T+ P+P S C A GWG++       PD ++ V + +LP   C   Y  ++ DV +C
Sbjct: 117 LP--TKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQKVTDVMLC 174

Query: 210 AGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVP 268
           AG   GG+DTC+ DSGGPL+C          + G  S+G   C +P  P +YT + +F  
Sbjct: 175 AGEMGGGKDTCRDDSGGPLIC-------DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNS 227

Query: 269 W----LMSNS 274
           W    +M N+
Sbjct: 228 WIKDTMMKNA 237

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score =  263 bits (675), Expect = 5e-89
 Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 24/243 (9%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG +    + P+++ L  D    C G ++ + WV+TAAHC         +V  G    
Sbjct: 1   IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHC---NLNKRSQVILGAHSI 57

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               PT+Q+  V +   +  +  A    DL LLQL    + N+YV  + LP   +  +P 
Sbjct: 58  TREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPG 117

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-----YEDRIADV-ICAGMPQGGR 217
           + C   GWG         D +REV++ I+    C       +   I    +CAG  +GGR
Sbjct: 118 TMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGR 177

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG--EGCARPNEPGVYTRVSQ-FVPWL---M 271
           D+C GDSG PLLC            GV S G    C  P  PGVY  +S+  + W+   +
Sbjct: 178 DSCNGDSGSPLLC-------EGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTI 230

Query: 272 SNS 274
             +
Sbjct: 231 KGA 233

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score =  262 bits (672), Expect = 8e-89
 Identities = 64/226 (28%), Positives = 99/226 (43%), Gaps = 16/226 (7%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG++A   AWP++++L   G   CG  ++  ++VM+AAHCV         V  G    
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNL 60

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               PT QV  V RI   + +    + ND+ +LQL      N  V+   LP         
Sbjct: 61  SRREPTRQVFAVQRIF-ENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNG 119

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPA-CKHYEDRIADVICAGMPQGGRDTCQGDS 224
             C A+GWG +  +      ++E+ V ++ + C+         +C  +       C GDS
Sbjct: 120 VQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSN------VCTLVRGRQAGVCFGDS 173

Query: 225 GGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPW 269
           G PL+C          + G+ S    GCA    P  +  V+QFV W
Sbjct: 174 GSPLVC-------NGLIHGIASFVRGGCASGLYPDAFAPVAQFVNW 212

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score =  260 bits (666), Expect = 7e-88
 Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 20/230 (8%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGML-R 104
           ++ G+     + PW  AL  +    C GV++   WV++AAHC     ++ + +  G+   
Sbjct: 1   IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCF----QNSYTIGLGLHSL 56

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
                P  Q+   S  V H  + R  + NDL L++L   +  +  +R I +   ++ P  
Sbjct: 57  EADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIA--SQCPTA 114

Query: 165 YSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDRIADV-ICAGMPQGGRDTC 220
            ++C   GWG +  +G  P  ++ V V ++    C K Y+        CAG  Q  +D+C
Sbjct: 115 GNSCLVSGWGLL-ANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQKDSC 173

Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPW 269
            GDSGGPL+C         Y+ G+VS G+  C +   PGVYT + +F  W
Sbjct: 174 NGDSGGPLIC-------NGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEW 216

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score =  260 bits (666), Expect = 9e-88
 Identities = 60/226 (26%), Positives = 84/226 (37%), Gaps = 16/226 (7%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG+KA    +P+L ++   G   CGG ++   +VMTAA C          V  G    
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDL 60

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                  +       +  + +   +  NDL LLQL         V  + LP    T E  
Sbjct: 61  RRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAG 120

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRIADVICAGMPQGGRDTCQGD 223
           + C   GWG+    G      R V V + P   C+         +C G+       C GD
Sbjct: 121 TRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNN------VCTGVLTRRGGICNGD 174

Query: 224 SGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
            G PL+C            GV S   G      P  +TRV+ F  W
Sbjct: 175 GGTPLVC-------EGLAHGVASFSLGPC-GRGPDFFTRVALFRDW 212

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score =  260 bits (666), Expect = 1e-87
 Identities = 68/233 (29%), Positives = 99/233 (42%), Gaps = 22/233 (9%)

Query: 46  VVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGF--EKHYFEVYAGM 102
           VVGG     G  PW ++L  R G   CGG ++ E W++TA  C          +EV+ G 
Sbjct: 1   VVGGHP---GNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGT 57

Query: 103 LRR--FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE 160
           L +      P+ Q  PV+++V           + L LL+L   +  N+ V  ICLP    
Sbjct: 58  LFQNPQHGEPSLQRVPVAKMVCGPSG------SQLVLLKLERSVTLNQRVALICLPPEWY 111

Query: 161 TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-YEDRIADV-ICAGMPQGG 216
              P + C   GWG     G     +    + ++    C   +  R+ +  +C       
Sbjct: 112 VVPPGTKCEIAGWGETKGTGN-DTVLNVALLNVISNQECNIKHRGRVRESEMCTEGLLAP 170

Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
              C+GD GGPL C        W + G++     CAR   P V+TRVS FV W
Sbjct: 171 VGACEGDYGGPLACFT---HNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDW 220

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score =  260 bits (666), Expect = 1e-87
 Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 21/232 (9%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           V+GG +  +     L+A +    F C G +++E WV+TAAHC        F++  G+  +
Sbjct: 1   VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCD----NTNFQMKLGVHSK 56

Query: 106 FSFSPTEQVRPVSR-IVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
              +  EQ R      +  +      +  D+ L++L + +  + ++ P+ LP  +  P  
Sbjct: 57  KVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLP--SSPPSV 114

Query: 165 YSTCTAVGWGAVFEHG-PDPDHMREVQVPILP--AC-KHYEDRIADV--ICAGMPQGGRD 218
            S C  +GWG++       PD      + +L    C   Y + + +   +CAG+ +GG+D
Sbjct: 115 GSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPELLTEYRTLCAGILEGGKD 174

Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPW 269
           TC GDSGGPL+C            G+VS G   C +  +PGVYT+V  +  W
Sbjct: 175 TCGGDSGGPLIC-------NGQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHW 219

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score =  258 bits (662), Expect = 4e-87
 Identities = 80/232 (34%), Positives = 120/232 (51%), Gaps = 17/232 (7%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGMLR 104
           +VGGK A +G +P+ ++L   G   CG  +LD + V+TAAHCVDG    +  +V+ G   
Sbjct: 1   IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNY 60

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
               S +  V  V   V++  +    + ND+AL+ L  P+++N  V+PI L    E    
Sbjct: 61  L---SESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDL-E 116

Query: 165 YSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRIAD-VICAGMPQGGRDTCQ 221
            + CT  GWG+    G  P+ ++E+++ + P   C+  + R+ D  IC    + G   C 
Sbjct: 117 SNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWRVIDSHICTL-TKRGEGACH 175

Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           GDSGGPL+             G+VS G  CA    P VYTRVS FV W+ +N
Sbjct: 176 GDSGGPLVA-------NGAQIGIVSFGSPCALGE-PDVYTRVSSFVSWINAN 219

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score =  258 bits (662), Expect = 4e-87
 Identities = 67/232 (28%), Positives = 105/232 (45%), Gaps = 21/232 (9%)

Query: 46  VVGGKKAELGAWPWLIALY---RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           ++GG +A+  + P++  L    +     CGG ++ + +V+TAAHC          V  G 
Sbjct: 1   IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCWGS----SINVTLGA 56

Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
                  PT+Q  PV R + H  +     +ND+ LLQL    +  R V+P+ LP      
Sbjct: 57  HNIKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQV 116

Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK-HYEDRI--ADVICAGMPQGGR 217
           +P  TC+  GWG     G     ++EV++ +     C+            +C G P+  +
Sbjct: 117 KPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKK 176

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
            + +GDSGGPL+C            G+VS+G     P  P   T+VS FV W
Sbjct: 177 TSFKGDSGGPLVC-------NKVAQGIVSYGRNNGMP--PRACTKVSSFVHW 219

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score =  258 bits (662), Expect = 5e-87
 Identities = 74/241 (30%), Positives = 112/241 (46%), Gaps = 30/241 (12%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG + E  + PW + +   G   CGGV++   WV+TAAHC+         +  G    
Sbjct: 1   IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRN----KSVILLGRHSL 56

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTN-----------DLALLQLAAPLRYNRYVRPIC 154
           F    T QV  VS    H ++  + + N           DL LL+L+ P      V+ + 
Sbjct: 57  FHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMD 116

Query: 155 LPDVTETPEPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH-YEDRIADV-IC 209
           LP  T+ P   +TC A GWG++       P  ++ V + ++    C   +  ++    +C
Sbjct: 117 LP--TQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQKVTKFMLC 174

Query: 210 AGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVP 268
           AG   GG+ TC GDSGGPL+C          + G+ S G E CA P  P +YT+V  +  
Sbjct: 175 AGRWTGGKSTCSGDSGGPLVC-------NGVLQGITSWGSEPCALPERPSLYTKVVHYRK 227

Query: 269 W 269
           W
Sbjct: 228 W 228

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score =  257 bits (659), Expect = 1e-86
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 19/229 (8%)

Query: 46  VVGGKKAELGAWPWLIALY---RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG +A+  + P++ +L      G   CGG ++  S+V+TAAHC+    +    V  G 
Sbjct: 1   IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGA 60

Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
               +  PT+Q   V+++ +++ +      ND+ L+QL++P   +  V  + LP   +  
Sbjct: 61  HNVRTQEPTQQHFSVAQVFLNN-YDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPV 119

Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP-ACKHYEDRIADVICAGMPQGGRDTCQ 221
              + C A+GWG V  H P    ++E+ V ++   C+ +       IC  +P+     C 
Sbjct: 120 PHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHN------ICTFVPRRKAGICF 173

Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPW 269
           GDSGGPL+C          + G+ S    GCA    P  +TRV+ +V W
Sbjct: 174 GDSGGPLIC-------DGIIQGIDSFVIWGCATRLFPDFFTRVALYVDW 215

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score =  257 bits (659), Expect = 1e-86
 Identities = 67/231 (29%), Positives = 103/231 (44%), Gaps = 20/231 (8%)

Query: 46  VVGGKKAELGAWPWLIALY----RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           ++GG ++   + P++  L     +     CGG ++   +V+TAAHC          V  G
Sbjct: 1   IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGR----EITVILG 56

Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
                    T+Q   V + ++H  +      +D+ LL+L   +     V  + LP  ++ 
Sbjct: 57  AHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDF 116

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRIADV-ICAGMPQGGRD 218
             P + C A GWG      P    +REV++ I+   AC  Y        +C G P   R 
Sbjct: 117 IHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYYEYKFQVCVGSPTTLRA 176

Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
              GDSGGPLLC            G+VS+G   A+P  P ++TRVS +VPW
Sbjct: 177 AFMGDSGGPLLC-------AGVAHGIVSYGHPDAKP--PAIFTRVSTYVPW 218

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score =  257 bits (658), Expect = 2e-86
 Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 25/236 (10%)

Query: 46  VVGGKKAELGAWPWLIALY--RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGML 103
           ++GG +  +    +L+ALY  R     CGG ++++ WV+TAAHC     +  F +  GM 
Sbjct: 1   IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCD----RKNFRIKLGMH 56

Query: 104 RRFSFSPTEQVR-PVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
            +   +  EQ R P  +    S         D+ L++L +P++ ++++ P  LP  +  P
Sbjct: 57  SKKVPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLP--SSPP 114

Query: 163 EPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKH----YEDRIADV-ICAGMPQ 214
              S C  +GWG +       PD    V + +L    C+     +E       +CAG+ +
Sbjct: 115 SVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILE 174

Query: 215 GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPW 269
           GG+DTC+GDSGGPL+C            G+ S G+  CA+P++P  YT+V   + W
Sbjct: 175 GGKDTCKGDSGGPLIC-------NGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDW 223

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score =  262 bits (671), Expect = 6e-86
 Identities = 80/260 (30%), Positives = 121/260 (46%), Gaps = 27/260 (10%)

Query: 43  SGRVVGGKKAELGAWPWLIALYRDGF--FHCGGVVLDESWVMTAAHCV------DGFEKH 94
            GR+V G  AE+G  PW + L+R       CG  ++ + WV+TAAHC+        F ++
Sbjct: 163 DGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN 222

Query: 95  YFEVYAGMLRRFSFSP-TEQVRPVSRIVMHSMFKRAE-MTNDLALLQLAAPLRYNRYVRP 152
              V  G   R  +    E++  + +I +H  +   E +  D+AL++L  P+ ++ Y+ P
Sbjct: 223 DLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP 282

Query: 153 ICLPDVTETPEPY---STCTAVGWGAVFEH------GPDPDHMREVQVPILP--ACKH-Y 200
           +CLPD                 GWG + E          P  ++ V +PI+    CK   
Sbjct: 283 VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST 342

Query: 201 EDRIAD-VICAGMPQ---GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNE 256
             RI D + CAG         D C+GDSGGP +   P    RWY  G+VS GEGC R  +
Sbjct: 343 RIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSP-FNNRWYQMGIVSWGEGCDRDGK 401

Query: 257 PGVYTRVSQFVPWLMSNSER 276
            G YT V +   W+    ++
Sbjct: 402 YGFYTHVFRLKKWIQKVIDQ 421

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score =  255 bits (655), Expect = 6e-86
 Identities = 86/242 (35%), Positives = 120/242 (49%), Gaps = 31/242 (12%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG + E  + PW  ALY    F CGG+++   WV+TAAHC+       ++++ G    
Sbjct: 1   IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCISDN----YQLWLGRHNL 56

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMT-----------NDLALLQLAAPL-RYNRYVRPI 153
           F    T Q   VS    H  F  + +            +DL LL+L  P       V+ +
Sbjct: 57  FDDENTAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVV 116

Query: 154 CLPDVTETPEPYSTCTAVGWGAV-FEHGPDPDHMREVQVPILP--ACKH-YEDRIADV-I 208
            LP  TE PE  STC A GWG++  E+   PD ++ V + ILP   CK  +  ++ D  +
Sbjct: 117 ELP--TEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQKVTDFML 174

Query: 209 CAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFV 267
           C G  +GG+DTC GDSGGPL+C          + GV S G   C  PN+P V  RV  +V
Sbjct: 175 CVGHLEGGKDTCVGDSGGPLMC-------DGVLQGVTSWGYVPCGTPNKPSVAVRVLSYV 227

Query: 268 PW 269
            W
Sbjct: 228 KW 229

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score =  255 bits (655), Expect = 7e-86
 Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 23/233 (9%)

Query: 46  VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGML 103
           VVGG +  +   P+L+ALY       HC G +++  WV+TAAHC     +    +  GM 
Sbjct: 1   VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCD----RRNIRIKLGMH 56

Query: 104 RRFSFSPTEQVR-PVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
            +   +  EQ+R P  +    +      +  D+ L++L  P+ Y+ ++ P+ LP  + + 
Sbjct: 57  SKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLP--SRSR 114

Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK--HYEDRIADV-ICAGMPQGGR 217
              S C  +GWG +      PD      + I+    C+  +         +CAG+ +GGR
Sbjct: 115 GVGSRCRIMGWGKI-STTTYPDVPHCTNIFIVKHKWCEPLYPWVPADSRTLCAGILKGGR 173

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPW 269
           DTC GDSGGPL+C          + G+V+ G E C +  +P VYT+V  +  W
Sbjct: 174 DTCHGDSGGPLIC-------NGEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNW 219

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score =  258 bits (661), Expect = 2e-85
 Identities = 70/258 (27%), Positives = 113/258 (43%), Gaps = 31/258 (12%)

Query: 38  NPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFE 97
            P     R++GG  A++  +PW +          GG +++E WV+TAAH V+G  +    
Sbjct: 75  EPFEEKQRIIGGSDADIKNFPWQVFFDN---PWAGGALINEYWVLTAAHVVEGNREPTMY 131

Query: 98  VYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT-------NDLALLQLAAPLRYNRYV 150
           V +  ++  S     ++     + +H  +K   +        ND+AL++L  P++    V
Sbjct: 132 VGSTSVQT-SRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTV 190

Query: 151 RPICLPDVTETPEPYS--TCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRIAD 206
            PICLP  +              GWG   E       ++  ++P+ P   CK  +     
Sbjct: 191 SPICLPGTSSDYNLMDGDLGLISGWGRT-EKRDRAVRLKAARLPVAPLRKCKEVKVEKPT 249

Query: 207 V-----------ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPN 255
                       ICAG  + G D+C+GDSGG      P  + ++Y AG+VS G  C    
Sbjct: 250 ADAEAYVFTPNMICAGG-EKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGT-- 306

Query: 256 EPGVYTRVSQFVPWLMSN 273
             G+YTRV  +V W+M  
Sbjct: 307 -YGLYTRVKNYVDWIMKT 323

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score =  254 bits (652), Expect = 2e-85
 Identities = 71/237 (29%), Positives = 110/237 (46%), Gaps = 22/237 (9%)

Query: 49  GKKAELGAWPWLIALYRDG---FFH-CGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           G+ A   +W W ++L  +    F H CGG ++   WV+TA HC+       ++V  G   
Sbjct: 2   GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIST--SRTYQVVLGEYD 59

Query: 105 RFSFSPTEQV--RPVSRIVMHSMFKRAEMT--NDLALLQLAAPLRYNRYVRPICLPDVTE 160
           R     +EQV       + +H ++    +   ND+AL++L+   +    V+   LP   +
Sbjct: 60  RSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGD 119

Query: 161 TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK---HYEDRIADV-ICAGMPQ 214
                + C   GWG ++  GP PD +++  +P +    C     +   +    +CAG   
Sbjct: 120 ILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAG--G 177

Query: 215 GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVS--HGEGCARPNEPGVYTRVSQFVPW 269
             R  C GDSGGPL C  P + G W V GV S     GC    +P V+TRVS F+ W
Sbjct: 178 DTRSGCNGDSGGPLNC--PAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDW 232

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score =  253 bits (650), Expect = 3e-85
 Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 20/230 (8%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           V+GG +  +    +L  +Y +G   CGG ++++ WV+TA HC  G       +Y GM   
Sbjct: 1   VIGGDECNINEHRFLALVYANGSL-CGGTLINQEWVLTARHCDRG----NMRIYLGMHNL 55

Query: 106 FSFSPTEQVR-PVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
              +     R P  +    +         D+ L++L  P+R + ++ P+ LP  +  P  
Sbjct: 56  KVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLP--SNPPSV 113

Query: 165 YSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKHYEDRI-ADVICAGMPQGGRDTC 220
            S C  +GWG +       PD      + IL    C+     + A  +CAG+ +GG+DTC
Sbjct: 114 GSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKGLAATTLCAGILEGGKDTC 173

Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPW 269
           +GDSGGPL+C            G++S G   CA+P +PG+YT+V  +  W
Sbjct: 174 KGDSGGPLIC-------NGQFQGILSVGGNPCAQPRKPGIYTKVFDYTDW 216

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score =  254 bits (650), Expect = 3e-85
 Identities = 68/241 (28%), Positives = 108/241 (44%), Gaps = 30/241 (12%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG + E  + PW +A+Y  G F CGGV++   WV+TAAHC+       ++++ G    
Sbjct: 1   IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMSD----DYQIWLGRHNL 56

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMT-----------NDLALLQLAAPLRYNRYVRPIC 154
                T Q   VS   +   F  + +            +DL LL+LA P R    V+ + 
Sbjct: 57  SKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILD 116

Query: 155 LPDVTETPEPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--AC-KHYEDRIADV-IC 209
           LP  T+ P+  STC   GWG +          ++ V++ +     C + Y +++ +  +C
Sbjct: 117 LP--TQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEKMTEFVLC 174

Query: 210 AGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVP 268
           A         C GDSGG L+C            G+ S G   CA  N+  V+T+V     
Sbjct: 175 ATHRDDSGSICLGDSGGALIC-------DGVFQGITSWGYSECADFNDNFVFTKVMPHKK 227

Query: 269 W 269
           W
Sbjct: 228 W 228

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score =  253 bits (649), Expect = 3e-85
 Identities = 63/231 (27%), Positives = 102/231 (44%), Gaps = 20/231 (8%)

Query: 46  VVGGKKAELGAWPWLIAL----YRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           ++GG + +  + P++  L           CGG ++  ++V+TAAHC          V  G
Sbjct: 1   IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCA----GRSITVTLG 56

Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
                    T Q   V +   H  +  + + +D+ LL+L         V  +  P     
Sbjct: 57  AHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNF 116

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRIADV-ICAGMPQGGRD 218
             P   C   GWG      P  D ++EV++ ++   AC H+ D   ++ +C G P+  + 
Sbjct: 117 VPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKS 176

Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
             +GDSGGPLLC            G+VS+G   A+P  P V+TR+S + PW
Sbjct: 177 AFKGDSGGPLLC-------AGVAQGIVSYGRSDAKP--PAVFTRISHYRPW 218

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score =  253 bits (648), Expect = 5e-85
 Identities = 70/231 (30%), Positives = 107/231 (46%), Gaps = 20/231 (8%)

Query: 46  VVGGKKAELGAWPWLIALY---RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           ++GG +A+  + P++  L          CGG ++ E +V+TAAHC+         V  G 
Sbjct: 1   IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGS----SINVTLGA 56

Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
                   T+QV PV R + H  +    + ND+ LL+L         V PI LP      
Sbjct: 57  HNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEV 116

Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK-HYEDRIADV-ICAGMPQGGRD 218
           +P   C+  GWG +  + P  D ++EV + +     C   +++ I    ICAG P   ++
Sbjct: 117 KPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNYIPFTQICAGDPSKRKN 176

Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
           +  GDSGGPL+C            G+VS+G        P VYTR+S F+ W
Sbjct: 177 SFSGDSGGPLVC-------NGVAQGIVSYGRNDGTT--PDVYTRISSFLSW 218

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score =  253 bits (649), Expect = 5e-85
 Identities = 53/235 (22%), Positives = 100/235 (42%), Gaps = 23/235 (9%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GGKK+++   PW + +  D    CGG +L  ++V+TAA CVDG +     ++ G   R
Sbjct: 1   IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGTKPSDISIHYGSSYR 60

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYN-RYVRPICLPDVTETPEP 164
            +    +    +++ +    +    M N+ A+++   P++ + +  + I LP +   PEP
Sbjct: 61  TT----KGTSVMAKKIYIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEP 116

Query: 165 YSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACK------HYEDRIADV-ICAGMPQ 214
            ++    GWG+      +    + E    ++   +C+        +  I D   CAG   
Sbjct: 117 DTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEY 176

Query: 215 GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
                  GD+G P +           + GV S+         P V+ RV  +V  
Sbjct: 177 DETYIGYGDAGDPAVQ-------NGTLVGVASYISSMP-SEFPSVFLRVGYYVLD 223

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score =  253 bits (648), Expect = 6e-85
 Identities = 75/241 (31%), Positives = 114/241 (47%), Gaps = 26/241 (10%)

Query: 46  VVGGKKAELGAWPWLIALY-RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           ++ G   ++   PW  AL  R    +CG V++   W++TAAHC     K  F V  G   
Sbjct: 1   IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCR----KKVFRVRLGHYS 56

Query: 105 RFSFS-PTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE 163
                   +Q+    + + H  +     +NDL L++L   +R  + VRPI +   +  P 
Sbjct: 57  LSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVS--SHCPS 114

Query: 164 PYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--AC-KHYEDRIADV-ICAGMPQGGRD 218
             + C   GWG         P  ++ + + +L    C   Y  +I D   CAG  + GRD
Sbjct: 115 AGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFCAGD-KAGRD 173

Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPW----LMSN 273
           +CQGDSGGP++C          + G+VS G+  CARPN PGVYT + +F  W    + +N
Sbjct: 174 SCQGDSGGPVVC-------NGSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQAN 226

Query: 274 S 274
           S
Sbjct: 227 S 227

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score =  253 bits (648), Expect = 6e-85
 Identities = 83/241 (34%), Positives = 121/241 (50%), Gaps = 32/241 (13%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG K E  + PW +A+  +  + CGGV++D SWV+TAAHC      + ++V  G    
Sbjct: 1   IVGGYKCEKNSQPWQVAVINE--YLCGGVLIDPSWVITAAHCY----SNNYQVLLGRNNL 54

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMT-----------NDLALLQLAAPLRYNRYVRPIC 154
           F   P  Q R V +   H  +    +T           NDL LL L+ P      V+ I 
Sbjct: 55  FKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVID 114

Query: 155 LPDVTETPEPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--AC-KHYEDRIADV-IC 209
           LP  T+ P+  STC A GWG+           ++ V + +L    C + Y+D + DV +C
Sbjct: 115 LP--TKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDNVTDVMLC 172

Query: 210 AGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVP 268
           AG  +GG+DTC GDSGGPL+C          + G+ S G   CA+P  P +Y ++ +F  
Sbjct: 173 AGEMEGGKDTCAGDSGGPLIC-------DGVLQGITSGGATPCAKPKTPAIYAKLIKFTS 225

Query: 269 W 269
           W
Sbjct: 226 W 226

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score =  258 bits (660), Expect = 1e-84
 Identities = 75/258 (29%), Positives = 123/258 (47%), Gaps = 29/258 (11%)

Query: 43  SGRVVGGKKAELGAWPWLIAL----YRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEV 98
           S RV  G + +L + PW+  L    + +  F CGG ++ E +++TAAHCV G +   +E+
Sbjct: 116 SQRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVHGLQNDLYEI 175

Query: 99  YAG------------MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRY 146
             G              R+   +P      + + ++H  +    + +D+ALL+L   + +
Sbjct: 176 RLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPF 235

Query: 147 NRYVRPICLPDVTETPEP---YSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-Y 200
            ++++PICLP   E  E     ST    GWG   E+G   D + +  VP+ P  AC   Y
Sbjct: 236 QKHIKPICLPITDELKEKAEQISTYFVTGWGTT-ENGSSSDVLLQANVPLQPRSACSQAY 294

Query: 201 EDRIAD-VICAGMPQGGRDTCQGDSGGPLLCPVPGS---QGRWYVAGVVSHG-EGCARPN 255
              +    +C G     +D+C+GDSGGPL  P         +    G+VS G   C + +
Sbjct: 295 RRAVPLSQLCVG-GGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQIS 353

Query: 256 EPGVYTRVSQFVPWLMSN 273
            PG+YT V ++V W+   
Sbjct: 354 LPGLYTNVGEYVQWITDT 371

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score =  252 bits (645), Expect = 1e-84
 Identities = 55/238 (23%), Positives = 104/238 (43%), Gaps = 21/238 (8%)

Query: 48  GGKKAELGAWPWLIALYR---DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           GG+K ++   PW +A+     +    CGG +L + +V+TAAHCV   +     +      
Sbjct: 2   GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETIVIQYESTN 61

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRY-VRPICLPDVTETPE 163
            +      +  P    V  S +++  M ND+A+L+L+ PL+ +    +P  LPD+   P+
Sbjct: 62  LWE--DPGKSDPYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPK 119

Query: 164 PYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK--HYEDRIAD-VICAGMPQGGRD 218
             S     G+G      P    ++  Q+ ++    C+  +    ++  V CA   + G  
Sbjct: 120 TGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPIFLSLQVFCAQ--KVGVS 177

Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER 276
              GD+G P +        +  + GV ++         P V+T+V  +V W+    ++
Sbjct: 178 LESGDAGDPTVQ-------QDTLVGVAAYFPKRP-EGAPEVFTKVGSYVSWIQDIIKK 227

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score =  252 bits (645), Expect = 2e-84
 Identities = 65/234 (27%), Positives = 105/234 (44%), Gaps = 17/234 (7%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG +A   +WP   AL+ D  + CGG ++   W++TAAHC+DG    + +V  G    
Sbjct: 1   IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDG--AGFVDVVLGAHNI 58

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                T+     +   +H  +    ++ND+A+++L  P+     +  + LP  +      
Sbjct: 59  REDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLP--STDVGVG 116

Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKHYEDRIAD-VICAGMPQGGRDTCQ 221
           +  T  GWG   +      D +R+V VPI+    C      + D  IC     GG+ TC 
Sbjct: 117 TVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGIVTDGNICIDST-GGKGTCN 175

Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMSNS 274
           GDSGGPL              G+ S G         P  +TRV+ F+ W+ + +
Sbjct: 176 GDSGGPLNY-------NGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQT 222

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score =  251 bits (644), Expect = 2e-84
 Identities = 74/231 (32%), Positives = 109/231 (47%), Gaps = 21/231 (9%)

Query: 46  VVGGKKAELGAWPWLIALY---RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           ++GG+++   + P++  L      G   CGG ++ E +V+TAAHC          V  G 
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGS----NINVTLGA 56

Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
                   T+Q     R + H  + +  + ND+ LLQL+  +R NR V P+ LP   E  
Sbjct: 57  HNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGL 116

Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC-KHYEDRIADV-ICAGMPQGGRD 218
            P + CT  GWG V       D +REVQ+ +     C + +        IC G  +  + 
Sbjct: 117 RPGTLCTVAGWGRV-SMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKA 175

Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
             +GDSGGPLLC            G+VS+G+    P  P V+TRVS F+PW
Sbjct: 176 AFKGDSGGPLLC-------NNVAHGIVSYGKSSGVP--PEVFTRVSSFLPW 217

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score =  251 bits (643), Expect = 3e-84
 Identities = 69/233 (29%), Positives = 110/233 (47%), Gaps = 23/233 (9%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++ G++    + PW  AL++     CGGV++ + WV+TAAHC     K  + V  G    
Sbjct: 1   ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCK----KQKYSVRLGDHSL 56

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMT---NDLALLQLAAPLRYNRYVRPICLPDVTETP 162
            S    EQ   V++ + H  +  +      +D+ L++L         V+P+ L      P
Sbjct: 57  QSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLA--NLCP 114

Query: 163 EPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--AC-KHYEDRIADV-ICAGMPQGGR 217
           +    C   GWG V     + P+ +   +V I     C + Y  +I +  +CAG    G 
Sbjct: 115 KVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITEGMVCAGSS-NGA 173

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPW 269
           DTCQGDSGGPL+C          + G+ S G   C +P +PGVYT++ ++  W
Sbjct: 174 DTCQGDSGGPLVC-------DGMLQGITSWGSDPCGKPEKPGVYTKICRYTTW 219

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score =  247 bits (633), Expect = 9e-83
 Identities = 64/233 (27%), Positives = 103/233 (44%), Gaps = 22/233 (9%)

Query: 46  VVGGKKAELGAWPWLIALY----RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           ++GG +    + P++              CGG ++ + +V+TAAHC          V  G
Sbjct: 1   IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKGR----SMTVTLG 56

Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
                +   T+Q+ PV++ + H  +   + +ND+ LL+L    +  R VRP+ LP     
Sbjct: 57  AHNIKAKEETQQIIPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAH 116

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK--HYEDRIADV-ICAGMPQGG 216
            +P   C   GWG V   G  P  + EV++ +     C+            IC G  +  
Sbjct: 117 VKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIK 176

Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
             + + DSGGPL+C       +   AG+VS+G+       P V+TRV  FV W
Sbjct: 177 GASFEEDSGGPLVC-------KRAAAGIVSYGQTDGSA--PQVFTRVLSFVSW 220

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score =  240 bits (615), Expect = 3e-79
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 22/233 (9%)

Query: 45  RVVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGML 103
                +  +L   PW + L   +G   CGGV++ E++V+T A C          V     
Sbjct: 52  LTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRN--ITVKTYFN 109

Query: 104 RRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV---TE 160
           R    S    +  ++ + +H  +      NDL+LL+L  P++      P+C P+      
Sbjct: 110 RT---SQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEH 166

Query: 161 TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-YEDRIADV-ICAGMPQGG 216
              P +     GW          + +    V ++    C       +     C       
Sbjct: 167 LLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCER---SS 221

Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
                   G  +       +G W++ GV+   +         + T+VS++  W
Sbjct: 222 VAAMHWMDGSVVTRE---HRGSWFLTGVLG-SQPVGGQAHMVLVTKVSRYSLW 270

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score =  241 bits (618), Expect = 3e-79
 Identities = 47/256 (18%), Positives = 85/256 (33%), Gaps = 23/256 (8%)

Query: 23  GNPLGARNMATDMAGNPILGSGRVVGGKKAELGAWPWLIALYR-DGFFHCGGVVLDESWV 81
           G  LG  +           G       +  +L   PW + L   +G   CGGV++ E++V
Sbjct: 72  GYRLGEDHKQCVPHDQCACGV-LTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFV 130

Query: 82  MTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLA 141
           +T A C          V     R    S    +  ++ + +H  +      NDL+LL+L 
Sbjct: 131 LTTAKCSLLHRN--ITVKTYFNRT---SQDPLMIKITHVHVHMRYDADAGENDLSLLELE 185

Query: 142 APLRYNRYVRPICLPDV---TETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--A 196
            P++      P+C P+         P +     GW          + +    V ++    
Sbjct: 186 WPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLVEGEE 243

Query: 197 CKH-YEDRI-ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARP 254
           C       +     C               G  +       +G W++ GV+   +     
Sbjct: 244 CGQVLNVTVTTRTYCER---SSVAAMHWMDGSVVTRE---HRGSWFLTGVLG-SQPVGGQ 296

Query: 255 NEPGVYTRVSQFVPWL 270
               + T+VS++  W 
Sbjct: 297 AHMVLVTKVSRYSLWF 312

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score =  227 bits (582), Expect = 5e-75
 Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 29/242 (11%)

Query: 46  VVGGKKAELGAWPWLIALY----RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           ++ G +A  G +P+   L           CGG ++D  W++TAAHCV         VY G
Sbjct: 1   IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAV--SVVVYLG 58

Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
              ++     E V    RI+ HSMF      ND+AL+++   + Y   ++PI LP   E 
Sbjct: 59  SAVQYE---GEAVVNSERIISHSMFNPDTYLNDVALIKI-PHVEYTDNIQPIRLPSGEEL 114

Query: 162 PEPY--STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK--HYEDRIAD-VICAGMPQ 214
              +     T  GWG       D   ++     ++    C   +    I +  IC     
Sbjct: 115 NNKFENIWATVSGWGQS---NTDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTS- 170

Query: 215 GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVS--HGEGCARPNEPGVYTRVSQFVPWLMS 272
            G+  C GDSGGP +        +  + GVVS   G GC    +P  ++RV+ ++ W+  
Sbjct: 171 DGKSPCFGDSGGPFVL-----SDKNLLIGVVSFVSGAGCE-SGKPVGFSRVTSYMDWIQQ 224

Query: 273 NS 274
           N+
Sbjct: 225 NT 226

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score =  236 bits (602), Expect = 1e-74
 Identities = 53/285 (18%), Positives = 95/285 (33%), Gaps = 64/285 (22%)

Query: 45  RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKH-YFEVYAGML 103
             +    ++    PW + +       C G ++ + WV+TAAHC      H  + V  G  
Sbjct: 223 GNMSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDP 282

Query: 104 RRFSFSPTEQVRPVSRIVMHSMF---------KRAEMTNDLALLQLAAPLRYNRYVRPIC 154
           +        +   + + V+   F               +D+ALL+LA  ++ + + RPIC
Sbjct: 283 KS----QWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPIC 338

Query: 155 LPDVTET-----PEPYSTCTAVGWGAVFEHG--PDPDHMREVQVPIL------------- 194
           LP   E          STC       + +         +   ++ I              
Sbjct: 339 LPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEV 398

Query: 195 --------PACKHYEDRI-ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVV 245
                   P      + +    +C+G  Q     C+G+SGG +       + R++  G+V
Sbjct: 399 VSQEKTMFPNLTDVREVVTDQFLCSGT-QEDESPCKGESGGAVFLER---RFRFFQVGLV 454

Query: 246 SHG-----EGCAR------------PNEPGVYTRVSQFVPWLMSN 273
           S G      G A             P     +  + +  PWL  +
Sbjct: 455 SWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQH 499

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score =  239 bits (611), Expect = 1e-73
 Identities = 85/239 (35%), Positives = 122/239 (51%), Gaps = 18/239 (7%)

Query: 43  SGRVVGGKKAELGAWPWLIALYRDGFFH-CGGVVLDESWVMTAAHCVDGFEK-HYFEVYA 100
            GRVVGG  A   +WPW ++L      H CGG ++   WV+TAAHC++   +   ++V  
Sbjct: 559 PGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVIL 618

Query: 101 GMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE 160
           G  +  +  P  Q   VSR+ +           D+ALL+L++P      V P CLP    
Sbjct: 619 GAHQEVNLEPHVQEIEVSRLFLEPTR------KDIALLKLSSPAVITDKVIPACLPSPNY 672

Query: 161 TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK---HYEDRIADV-ICAGMPQ 214
                + C   GWG   +       ++E Q+P++    C        R+    +CAG   
Sbjct: 673 VVADRTECFITGWGET-QGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLA 731

Query: 215 GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           GG D+CQGDSGGPL+C     + ++ + GV S G GCARPN+PGVY RVS+FV W+   
Sbjct: 732 GGTDSCQGDSGGPLVCF---EKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGV 787

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score =  230 bits (587), Expect = 1e-72
 Identities = 58/286 (20%), Positives = 95/286 (33%), Gaps = 68/286 (23%)

Query: 45  RVVGGKKAELGAWPWLIALY----RDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVY 99
                K  +    PW   +       G   C G V+ E +V+TAAHC    +K H  +V 
Sbjct: 214 VWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVS 273

Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT---------NDLALLQLAAPLRYNRYV 150
            G          ++   +  ++ H  +                D+AL++L   L+Y + +
Sbjct: 274 VG--------GEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTI 325

Query: 151 RPICLPDVTETPEPYSTCTAVGWGAVFE------------HGPDPDHMREVQVPILP--- 195
           RPICLP    T                E               +   +   +V I     
Sbjct: 326 RPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDK 385

Query: 196 --ACKH-------------YEDRI-ADVICAG--MPQGGRDTCQGDSGGPLLCPVPGSQG 237
             +C+                + +    +C G   P    +TC+GDSGGPL+      + 
Sbjct: 386 KGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK---RS 442

Query: 238 RWYVAGVVSHG--EGCARPNE--------PGVYTRVSQFVPWLMSN 273
           R+   GV+S G  + C                +  + Q +PWL   
Sbjct: 443 RFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEK 488

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score =  209 bits (534), Expect = 7e-63
 Identities = 59/286 (20%), Positives = 96/286 (33%), Gaps = 68/286 (23%)

Query: 45  RVVGGKKAELGAWPWLIALY----RDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVY 99
                K  +    PW   +       G   C G V+ E +V+TAAHC    +K H  +V 
Sbjct: 456 VWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVS 515

Query: 100 AGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT---------NDLALLQLAAPLRYNRYV 150
            G          ++   +  ++ H  +                D+AL++L   L+Y + +
Sbjct: 516 VGG--------EKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTI 567

Query: 151 RPICLPDVTETPE-----PYSTCTAVGWGAVFEHG-------PDPDHMREVQVPILP--- 195
           RPICLP    T       P +TC       +            +   +   +V I     
Sbjct: 568 RPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDK 627

Query: 196 --ACKHYEDRIA--------------DVICAG--MPQGGRDTCQGDSGGPLLCPVPGSQG 237
             +C+                       +C G   P    +TC+GDSGGPL+      + 
Sbjct: 628 KGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK---RS 684

Query: 238 RWYVAGVVS--HGEGCARPNE--------PGVYTRVSQFVPWLMSN 273
           R+   GV+S    + C                +  + Q +PWL   
Sbjct: 685 RFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEK 730

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B Length = 152

 Score =  171 bits (437), Expect = 3e-54
 Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 17/145 (11%)

Query: 133 NDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPD---PDHMREV 189
           +DL LL+L +P +    V+ + LP  T+ PE  STC A GWG++     D   PD ++ V
Sbjct: 8   HDLMLLRLQSPAKITDAVKVLELP--TQEPELGSTCEASGWGSIEPGPDDFEFPDEIQCV 65

Query: 190 QVPILP--ACKH-YEDRIADV-ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVV 245
           Q+ +L    C   + D++ +  +CAG   GG+DTC GDSGGPL+C      G W   G+ 
Sbjct: 66  QLTLLQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLIC-----NGMWQ--GIT 118

Query: 246 SHGEG-CARPNEPGVYTRVSQFVPW 269
           S G   C   N+P +YT++  ++ W
Sbjct: 119 SWGHTPCGSANKPSIYTKLIFYLDW 143

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ... Length = 131

 Score =  157 bits (400), Expect = 7e-49
 Identities = 42/131 (32%), Positives = 72/131 (54%), Gaps = 4/131 (3%)

Query: 46  VVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           +V G++A  G+WPW ++L  + GF  CGG +++E+WV+TAAHC          V AG   
Sbjct: 1   IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHC---GVTTSDVVVAGEFD 57

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
           + S S   Q   ++++  +S +    + ND+ LL+L+    +++ V  +CLP  ++    
Sbjct: 58  QGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAA 117

Query: 165 YSTCTAVGWGA 175
            +TC   GWG 
Sbjct: 118 GTTCVTTGWGL 128

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ... Length = 97

 Score =  126 bits (319), Expect = 3e-37
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 180 GPDPDHMREVQVPILP--AC-KHYEDRIADV-ICAGMPQGGRDTCQGDSGGPLLCPVPGS 235
              PD +++  +P+L    C K++  +I D  ICAG    G  +C GDSGGPL+C     
Sbjct: 1   ANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAG--ASGVSSCMGDSGGPLVCK---K 55

Query: 236 QGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
            G W + G+VS G      + PGVY RV+  V W+   
Sbjct: 56  NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQT 93

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A Length = 80

 Score = 89.5 bits (223), Expect = 3e-23
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG++ E  + PW +A+Y    F CGGV+++  WV+TAAHC +      +EV+ G    
Sbjct: 1   IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCKND----NYEVWLGRHNL 56

Query: 106 FSFSPTEQVRPVSRIVMH 123
           F    T Q   V+    H
Sbjct: 57  FENENTAQFFGVTADFPH 74

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Length = 215

 Score = 83.1 bits (205), Expect = 3e-19
 Identities = 39/242 (16%), Positives = 65/242 (26%), Gaps = 38/242 (15%)

Query: 46  VVGG-----KKAELGAWPW-LIALYRDGFFHCGGVVLDESWVMTAAHCV----DGFEKHY 95
           VV G     K A     P+  IA    G   C G ++  + ++T  HCV           
Sbjct: 1   VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAK 60

Query: 96  FEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICL 155
             VY G     S +           V            D A+++    +     V    +
Sbjct: 61  GSVYPG--MNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNI--GNTVGYRSI 116

Query: 156 PDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQG 215
                T    +T    G+              E+   +                  +   
Sbjct: 117 R--QVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSV------------TREDTNLAYY 162

Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS-QFVPWLMSNS 274
             DT  G+SG  +L           + GV + G      N      + +  FV ++    
Sbjct: 163 TIDTFSGNSGSAML------DQNQQIVGVHNAGYSNGTIN---GGPKATAAFVEFINYAK 213

Query: 275 ER 276
            +
Sbjct: 214 AQ 215

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica} Length = 218

 Score = 60.5 bits (146), Expect = 4e-11
 Identities = 31/216 (14%), Positives = 53/216 (24%), Gaps = 27/216 (12%)

Query: 55  GAWPWLIALY---RDGFFHCGGVVLD---ESWVMTAAHCV----DGFEKHYFEVYAGMLR 104
              P +  ++     G F C   ++    +S V TA HC+     G     F        
Sbjct: 4   ADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPA--Y 61

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
            +  S          +       R +  +D A   L          +      +      
Sbjct: 62  DYGESEHGVWAAEELVTSAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFNQPR 121

Query: 165 YSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDS 224
               +A G+ A      +   +                   D + +       +   G S
Sbjct: 122 GQYYSAYGYPA--AAPFNGQELHSCHGTATN----------DPMGSSTQGIPCNMTGGSS 169

Query: 225 GGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVY 260
           GGP      G+          S+G         G Y
Sbjct: 170 GGPWFL---GNGTGGAQNSTNSYGYTFLPNVMFGPY 202

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A* Length = 268

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 36/244 (14%), Positives = 59/244 (24%), Gaps = 48/244 (19%)

Query: 60  LIALYRDGFFHCGGVVLDES------WVMTAAHCVDGFEKHY--------FEVYAGMLRR 105
           + A  + G   C G +++ +      + +TA HC  G             ++        
Sbjct: 25  VGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPN 84

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
              S       +S+    S  K    T+D  LL+L                       P 
Sbjct: 85  TPASGANGDGSMSQTQSGSTVKATYATSDFTLLEL------------------NNAANPA 126

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMP--------QGGR 217
                 GW    ++ P    +    V                   G          Q   
Sbjct: 127 FNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSG 186

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CA--RPNEPGVYTRVSQFVPWLMSNS 274
              +  S G  +           V G +  G   C+    N    Y RV        + +
Sbjct: 187 GVTEPGSSGSPIY-----SPEKRVLGQLHGGPSSCSATGTNRSDQYGRVFTSWTGGGAAA 241

Query: 275 ERAK 278
            R  
Sbjct: 242 SRLS 245

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Length = 268

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 11/93 (11%)

Query: 56  AWPW-----LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSP 110
              +     +      G F   GVV+ +  ++T  H VD             L+ F  + 
Sbjct: 16  NGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGD-----PHALKAFPSAI 70

Query: 111 TEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAP 143
            +   P        + K +    DLA+++ +  
Sbjct: 71  NQDNYPNGGFTAEQITKYSG-EGDLAIVKFSPN 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	100.0
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	100.0
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	100.0
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	100.0
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	100.0
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	100.0
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	100.0
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	100.0
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	100.0
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	100.0
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	100.0
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	100.0
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	100.0
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	100.0
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	100.0
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	100.0
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	100.0
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	100.0
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	100.0
1aut_C	250	Activated protein C; serine proteinase, plasma cal	100.0
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	100.0
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	100.0
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	100.0
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	100.0
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	100.0
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	100.0
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	100.0
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	100.0
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	100.0
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	100.0
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	100.0
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	100.0
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	100.0
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	100.0
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	100.0
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	100.0
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	100.0
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	100.0
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	100.0
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	100.0
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	100.0
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	100.0
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	100.0
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	100.0
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	100.0
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	100.0
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	100.0
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	100.0
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	100.0
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	100.0
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	100.0
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	100.0
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	100.0
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	100.0
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	100.0
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	100.0
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	100.0
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	100.0
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	100.0
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	100.0
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	100.0
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	100.0
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	100.0
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	100.0
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	100.0
1a7s_A	225	Heparin binding protein; serine protease homolog,	100.0
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	100.0
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	100.0
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	100.0
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	100.0
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	100.0
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	100.0
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	100.0
1elv_A	333	Complement C1S component; trypsin-like serin prote	100.0
1md8_A	329	C1R complement serine protease; innate immunity, a	100.0
2aiq_A	231	Protein C activator; snake venom serine proteinase	100.0
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	100.0
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	100.0
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	100.0
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	100.0
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	100.0
2xrc_A	565	Human complement factor I; immune system, hydrolas	100.0
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	100.0
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	100.0
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	100.0
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	100.0
1gpz_A	399	Complement C1R component; hydrolase, activation, i	100.0
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	100.0
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	100.0
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	100.0
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	100.0
3hrz_D	741	Complement factor B; serine protease, glycosilated	100.0
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	100.0
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	100.0
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.97
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	99.97
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	99.96
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	99.96
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	99.96
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	99.96
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	99.95
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	99.95
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	99.91
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	99.91
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	99.91
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.89
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	99.84
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	99.82
3k6y_A	237	Serine protease, possible membrane-associated seri	99.75
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	99.72
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	99.71
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	99.7
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	99.67
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	99.66
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	99.61
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	99.58
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	99.56
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	99.54
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	99.46
1hpg_A	187	Glutamic acid specific protease; serine protease,	99.44
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	99.4
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.27
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	99.2
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.18
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	99.02
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.93
1zyo_A	191	Serine protease; beta-barrel, glutamyl endopeptida	98.7
2w5e_A	163	Putative serine protease; coiled coil, transmembra	98.62
2h5c_A	198	Alpha-lytic protease; serine protease, acylation t	98.59
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	98.48
1wxr_A	1048	Haemoglobin protease; hemoglobine protease, autotr	98.37
3syj_A	1011	Adhesion and penetration protein autotransporter;	96.95
1mbm_A	198	NSP4 proteinase, chymotrypsin-like serine protease	96.67
1lvm_A	229	Catalytic domain of the nuclear inclusion protein	96.54
3mmg_A	241	Nuclear inclusion protein A; 3C-type protease, TEV	96.46
3fan_A	213	Non-structural protein; chymotrypsin-like, N-termi	95.67
3h09_A	989	IGA1 protease, immunoglobulin A1 protease; serine	94.78
3sze_A	968	Serine protease ESPP; parallel beta-helix, hydrola	94.22
4ash_A	185	NS6 protease; hydrolase, trypsin-like, calicivirus	93.09
2fyq_A	194	Chymotrypsin-like cysteine proteinase; protease, n	91.99

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=100.00  E-value=7.3e-54  Score=360.74  Aligned_cols=228  Identities=35%  Similarity=0.775  Sum_probs=198.4

Q ss_pred             eecCeeCCCCccceEEEEee---CCeEEeEEEEeeCCEEEeccCCcCCCC-CceEEEEEeeeecccCCCCceEEeeeEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYR---DGFFHCGGVVLDESWVMTAAHCVDGFE-KHYFEVYAGMLRRFSFSPTEQVRPVSRIV  121 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~---~~~~~C~GtLIs~~~VLTaAhC~~~~~-~~~~~v~~g~~~~~~~~~~~~~~~v~~~~  121 (286)
                      |+||++|..++|||+|+|+.   .+.++|+||||+++||||||||+.... ...+.|++|..+........+.+.|++++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~   80 (238)
T 3bg8_A            1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEII   80 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEECSSSCEEEEEEEEEETTEEEECGGGGTTCCCGGGEEEECSCSBGGGCCTTSCCEEEEEEE
T ss_pred             CCCCeECCCCCcCcEEEEEeecCCCcEEEEEEEeeCCEEEECHHHCCCCCCCceEEEEEeeccCCcCCCCceEEeeEEEE
Confidence            68999999999999999976   457899999999999999999997643 35788999988876655567788999999


Q ss_pred             ECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccc
Q psy10841        122 MHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       122 ~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~  199 (286)
                      +||+|+.....+|||||||++|+.|++.++|||||........+..++++|||.+...+..+..|+++.+++++  +|+.
T Consensus        81 ~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~  160 (238)
T 3bg8_A           81 IHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK  160 (238)
T ss_dssp             ECTTCCCGGGSCCCEEEEESSCCCCBTTBCCCBCCCGGGGSSCCCCEEEEESCCSSSSCCCCSBCEEEECCEECHHHHHH
T ss_pred             ECCCCCCCCCCCcEEEEEECCccccCCCcccCCCCCCccCcCCCCeEEEEecCCCCCCCChhhhhcEeeEEEECHHHhhh
Confidence            99999988888999999999999999999999999865445667899999999887666667889999999888  5876


Q ss_pred             ccc---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        200 YED---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       200 ~~~---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      .+.   ..+.+||++......+.|.|||||||++..   +++|+|+||+||+..|+..+.|++||||++|++||+++++.
T Consensus       161 ~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~---~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  237 (238)
T 3bg8_A          161 RYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKH---NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQA  237 (238)
T ss_dssp             HCTTSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEE---TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHSC
T ss_pred             hhcCCCCCCCeEeecCCCCCCCcCCCCCCcceEEEE---CCeEEEEEEEEECCCCCCCCCCcEEEeHHHHHHHHHHHHhc
Confidence            543   567899998655677899999999999976   67999999999999998778899999999999999998864

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=100.00  E-value=1.7e-53  Score=359.11  Aligned_cols=229  Identities=36%  Similarity=0.865  Sum_probs=199.3

Q ss_pred             eecCeeCCCCccceEEEEee---CCeEEeEEEEeeCCEEEeccCCcCCCCC-ceEEEEEeeeecccCCCCceEEeeeEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYR---DGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGMLRRFSFSPTEQVRPVSRIV  121 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~---~~~~~C~GtLIs~~~VLTaAhC~~~~~~-~~~~v~~g~~~~~~~~~~~~~~~v~~~~  121 (286)
                      |+||+++..++|||+|.|+.   ++.++|+||||+++||||||||+..... ..+.|++|..+........+.+.|++++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~   80 (241)
T 2any_A            1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSGILELSDITKDTPFSQIKEII   80 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEESSSEEEEEEEEEEETTEEEECGGGGSSCCCSTTEEEECSCSBGGGCCTTSCCBCEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEEEcCCCceEEEEEEecCCEEEECHHHcCCCCCCccEEEEeeeeeccccccCceEEeeEEEE
Confidence            68999999999999999975   4568999999999999999999976432 5678999988776655566778899999


Q ss_pred             ECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccc
Q psy10841        122 MHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       122 ~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~  199 (286)
                      +||+|+.....+|||||||++|+.|+++++|||||........+..++++|||.+...+..+..|+++.+++++  .|+.
T Consensus        81 ~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~  160 (241)
T 2any_A           81 IHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQK  160 (241)
T ss_dssp             ECTTCCTTSSSSCCEEEEESSCCCCBTTBCCCCCCCSSCCSTTCSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHT
T ss_pred             ECCCCCCCCCCCCeEEEEeCCcccCCCCcceeEcCCcccCCCCCCeEEEEecccCCCCCCcCchhheeEeEEeCHHHhhh
Confidence            99999998889999999999999999999999999866556678899999999887666667889999999888  5876


Q ss_pred             ccc---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        200 YED---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       200 ~~~---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      .+.   ..+.+||++......+.|.|||||||++..   +++|+|+||+||+..|+..+.|++||||++|++||++++++
T Consensus       161 ~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~---~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~~~  237 (241)
T 2any_A          161 RYQDYKITQRMVCAGYKEGGKDACKGDSGGPLVCKH---NGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQS  237 (241)
T ss_dssp             TSCTTCSCTTEEEECCTTCCCBCCTTCTTCEEEEEE---TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHSC
T ss_pred             HhccCCCCcCcEeecCCCCCCccCCCCCCCcEEEEE---CCEEEEEEEEEecCCCCCCCCCeEEEEHHHhHHHHHHHhhc
Confidence            543   567899998655667899999999999976   68999999999999998778899999999999999999976


Q ss_pred             c
Q psy10841        277 A  277 (286)
Q Consensus       277 ~  277 (286)
                      .
T Consensus       238 ~  238 (241)
T 2any_A          238 S  238 (241)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=100.00  E-value=2.6e-53  Score=358.81  Aligned_cols=225  Identities=35%  Similarity=0.740  Sum_probs=193.5

Q ss_pred             CceecCeeCCCCccceEEEEee-CCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEE
Q psy10841         44 GRVVGGKKAELGAWPWLIALYR-DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVM  122 (286)
Q Consensus        44 ~~i~~g~~a~~~~~Pw~v~i~~-~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~  122 (286)
                      .||+||+++..++|||+|+|+. .+.++|+||||+++||||||||+..   ....|++|.++........+.+.|.++++
T Consensus        14 ~rIvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~---~~~~v~~G~~~~~~~~~~~~~~~v~~i~~   90 (245)
T 1t8o_A           14 SRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVT---TSDVVVAGEFDQGSSSEKIQKLKIAKVFK   90 (245)
T ss_dssp             --CBTCEECCTTSSTTEEEEECTTCCEEEEEEEEETTEEEECGGGCCC---TTSEEEESCSBTTCSSSCCEEEEEEEEEE
T ss_pred             CceECCEECCCCCCCceEEEEcCCCCeEEEEEEeeCCEEEEcHHhCcC---CCcEEEEeeeecCCCCCCcEEEEEEEEEe
Confidence            5999999999999999999986 4568999999999999999999865   34578889887765555678899999999


Q ss_pred             CCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCC-CCccceeEeeeecc--cccc
Q psy10841        123 HSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGP-DPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       123 hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~-~~~~l~~~~~~~~~--~c~~  199 (286)
                      ||+|+.....+|||||||++|+.|++.++|||||........+..++++|||.+...+. .+..|+++.+.+++  +|+.
T Consensus        91 hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~  170 (245)
T 1t8o_A           91 NSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKK  170 (245)
T ss_dssp             CTTCCTTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSCC--CCCCSBCEEEEEEEECHHHHHH
T ss_pred             CCCCCCCCCCCCEEEEEECCCCcCCCceeeeECCCCccCCCCCCEEEEEEeCCCCCCCCCCcchheEEEEeeEcchhhhH
Confidence            99999988899999999999999999999999998665556789999999998865443 56789999999988  5876


Q ss_pred             ccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        200 YED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       200 ~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      .+.  ..+.+||++  ....+.|.|||||||++..   +++|+|+||+|||..|+..+.|++||||+.|++||++++++
T Consensus       171 ~~~~~~~~~~~Ca~--~~~~~~C~GDSGgPL~~~~---~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~~~  244 (245)
T 1t8o_A          171 YWGTKIKDAMICAG--ASGVSSCMGDSGGPLVCKK---NGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAA  244 (245)
T ss_dssp             HHGGGCCTTEEEEE--CSSCBCCTTCTTCEEEEEE---TTEEEEEEEEEECCTTCCTTSEEEEEEGGGTHHHHHHHHHT
T ss_pred             hhcCcCCCceEEcc--CCCCccCcccCcCCEEEEE---CCEEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHcc
Confidence            543  578899998  4567899999999999976   68999999999999998778899999999999999999875

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=100.00  E-value=3.1e-53  Score=361.47  Aligned_cols=229  Identities=38%  Similarity=0.836  Sum_probs=201.0

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCC-CCceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGF-EKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~-~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |+||+++..++|||+|+|+..+.++|+||||+++||||||||+.+. ....+.|++|..+........+.+.|+++++||
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp   80 (261)
T 3gyl_B            1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHP   80 (261)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECGGGSCTTSCGGGEEEEESCSBTTSCCSSCEEECEEEEEECT
T ss_pred             CCCCcCCCCCCCCcEEEEeeCCceEEEEEEEcCCEEEECHHHCCCCCCcccEEEEeCceeccCCCCCceEEEEEEEEECC
Confidence            6899999999999999999888999999999999999999999643 346788999988877666667889999999999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCC--CCccceeEeeeecc--ccccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGP--DPDHMREVQVPILP--ACKHY  200 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~--~~~~l~~~~~~~~~--~c~~~  200 (286)
                      +|+.....+|||||||++|+.|++.++|||||........+..++++|||.+.....  ....++++.+.+++  .|+..
T Consensus        81 ~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~  160 (261)
T 3gyl_B           81 SYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSL  160 (261)
T ss_dssp             TCCSTTCSCCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCCCTTCBCEEEEEEEECHHHHHHH
T ss_pred             CcCCCCCCCcEEEEEECCCccCCCceeccCCCCcccCCCCCCEEEEEecCCCCCCCCccCCccceEEEEEEECHHHhhhh
Confidence            999998999999999999999999999999998766666788999999998765443  36789999999988  58765


Q ss_pred             cc----------CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHH
Q psy10841        201 ED----------RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL  270 (286)
Q Consensus       201 ~~----------~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI  270 (286)
                      +.          ..+.+||++......+.|.|||||||++..   +++|+|+||+||+..|+..+.|++||||+.|++||
T Consensus       161 ~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~---~~~~~lvGI~S~g~~c~~~~~p~vyt~v~~~~~WI  237 (261)
T 3gyl_B          161 YNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV---EGLWYLTGIVSWGDACGARNRPGVYTLASSYASWI  237 (261)
T ss_dssp             HTTTCCTTCCCCCCTTEEEESCSSSSCBCCTTTTTCEEEEEE---TTEEEEEEEECCCCCSSCTTCCEEEEEGGGGHHHH
T ss_pred             hcccccccccccccCCeEeeCCCCCCCccCCCCCCCeeEEEe---CCEEEEEEEEecCCCCCCCCCCCEEEEHHHhHHHH
Confidence            43          567899998656678899999999999976   68899999999999998878899999999999999


Q ss_pred             Hhhhccc
Q psy10841        271 MSNSERA  277 (286)
Q Consensus       271 ~~~~~~~  277 (286)
                      ++++++.
T Consensus       238 ~~~i~~~  244 (261)
T 3gyl_B          238 QSKVTEL  244 (261)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhc
Confidence            9998653

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=100.00  E-value=5.9e-53  Score=354.98  Aligned_cols=224  Identities=40%  Similarity=0.792  Sum_probs=192.9

Q ss_pred             eecCeeCCCCccceEEEEeeC--Ce--EEeEEEEeeCCEEEeccCCcCCC---CCceEEEEEeeeecccCCCCceEEeee
Q psy10841         46 VVGGKKAELGAWPWLIALYRD--GF--FHCGGVVLDESWVMTAAHCVDGF---EKHYFEVYAGMLRRFSFSPTEQVRPVS  118 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~--~~--~~C~GtLIs~~~VLTaAhC~~~~---~~~~~~v~~g~~~~~~~~~~~~~~~v~  118 (286)
                      |+||++|..++|||+|+|+..  +.  .+|+||||+++||||||||+.+.   ....+.|++|..+........+.+.|+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~   80 (237)
T 2f91_A            1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQIITVS   80 (237)
T ss_dssp             CBSCEECCTTTSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGTTTSCTTSCCSEEEEESCSBTTSCCSCCEEEEEE
T ss_pred             CCCccCCCCCCCCcEEEEEEecCCCCcceEEEEEeeCCEEEEcHHhCCCCccCCcccEEEEECCeeccCCCCccEEEEEE
Confidence            689999999999999999753  22  34999999999999999999764   346788999988765444456889999


Q ss_pred             EEEECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--c
Q psy10841        119 RIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--A  196 (286)
Q Consensus       119 ~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~  196 (286)
                      ++++||+|+.....+|||||||++|+.|++.++|||||....  ..+..++++|||.+...+..+..|+++.+++++  +
T Consensus        81 ~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~--~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~  158 (237)
T 2f91_A           81 KIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGH--TATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDED  158 (237)
T ss_dssp             EEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTC--CCCSEEEEEESCCSSTTCCCCSBCEEEEEEEECHHH
T ss_pred             EEEECCCCCCCCCCCcEEEEEECCCcccCCceeeccCCCCCC--CCCCcEEEEECCcCCCCCCccceeeEEEEeEcCHHH
Confidence            999999999988899999999999999999999999997433  566889999999887666667889999999988  5


Q ss_pred             cccccc---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhh
Q psy10841        197 CKHYED---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN  273 (286)
Q Consensus       197 c~~~~~---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~  273 (286)
                      |+..+.   ..+.+||++......+.|.|||||||++..   +++|+|+||+||+..|...+.|++||||++|++||+++
T Consensus       159 C~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~---~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~  235 (237)
T 2f91_A          159 CRADYGADEILDSMICAGVPEGGKDSCQGDSGGPLAASD---TGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKAN  235 (237)
T ss_dssp             HHHHHCTTTSCTTEEEECCTTCCCBCCTTCTTCEEEECT---TSSCEEEEEEEEESSSSCTTCCEEEEEGGGSHHHHHHH
T ss_pred             hhhhhCCCCcCCCeEEEecCCCCCCCCCCcCCCCeEEec---CCCEEEEEEEEecCCCCCCCCCcEEEEHHHhHHHHHHh
Confidence            876543   567899998655678899999999999864   78899999999999998878899999999999999987


Q ss_pred             h
Q psy10841        274 S  274 (286)
Q Consensus       274 ~  274 (286)
                      +
T Consensus       236 ~  236 (237)
T 2f91_A          236 A  236 (237)
T ss_dssp             C
T ss_pred             c
Confidence            5

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=100.00  E-value=3.8e-53  Score=355.61  Aligned_cols=227  Identities=40%  Similarity=0.864  Sum_probs=198.7

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCC--CCceEEEEEeeeecccC-CCCceEEeeeEEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGF--EKHYFEVYAGMLRRFSF-SPTEQVRPVSRIVM  122 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~--~~~~~~v~~g~~~~~~~-~~~~~~~~v~~~~~  122 (286)
                      |+||+++..++|||+|+|+..+.++|+||||+++||||||||+.+.  ....+.+.+|....... ....+.+.|+++++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~v~~i~~   80 (235)
T 4dgj_A            1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVI   80 (235)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECHHHHTTSCSSGGGEEEEESCCBTTCCSCTTCEEEEEEEEEE
T ss_pred             CCCCccCCCCCCCcEEEEeeCCCeEEEEEEeeCCEEEECHHhcCCCCCCCccEEEEEeeecccccCCCceeEEeEEEEEE
Confidence            6899999999999999999888999999999999999999999653  34678899997665432 23456788999999


Q ss_pred             CCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccc
Q psy10841        123 HSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHY  200 (286)
Q Consensus       123 hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~  200 (286)
                      ||+|+.....+|||||||++++.|++.++|||||........+..++++|||.+...+.....|++..+.+++  +|+..
T Consensus        81 hp~y~~~~~~~DiALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~  160 (235)
T 4dgj_A           81 NPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQ  160 (235)
T ss_dssp             CTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSBSSTTCCBCSBCEEEEEEEECHHHHHHH
T ss_pred             CCCCCCCCCCCeEEEEEECCccccCCcccccCCCCcccCCCCCCEEEEEecccCCCCCccchhheEeEeeecCHHHhhhh
Confidence            9999999999999999999999999999999999876666678999999999887767777889999999988  58765


Q ss_pred             c---cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        201 E---DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       201 ~---~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                      +   ...+.+||++......+.|.|||||||++..   +++|+|+||+|||..|+..+.|++||||++|++||+++++
T Consensus       161 ~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~---~~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~~WI~~~i~  235 (235)
T 4dgj_A          161 MPEYNITENMICAGYEEGGIDSCQGDSGGPLMCQE---NNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFLH  235 (235)
T ss_dssp             CTTSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEE---TTEEEEEEEEEECSSSSCTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             ccCccCCCCeEeecCCCCCCccCCCCCCCeEEEEE---CCcEEEEEEEEEcCCCCCCCCCEEEeeHHHHHHHHHHHhC
Confidence            4   3568899998766677899999999999976   6899999999999999987889999999999999999874

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=100.00  E-value=8.3e-53  Score=354.76  Aligned_cols=228  Identities=35%  Similarity=0.704  Sum_probs=198.1

Q ss_pred             eecCeeCCCCccceEEEEeeCC-eEEeEEEEeeCCEEEeccCCcCCC------CCceEEEEEeeeecccC-CCCceEEee
Q psy10841         46 VVGGKKAELGAWPWLIALYRDG-FFHCGGVVLDESWVMTAAHCVDGF------EKHYFEVYAGMLRRFSF-SPTEQVRPV  117 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~-~~~C~GtLIs~~~VLTaAhC~~~~------~~~~~~v~~g~~~~~~~-~~~~~~~~v  117 (286)
                      |+||+++..++|||+|+|+..+ .++|+||||+++||||||||+.+.      ....+.|++|..+.... ....+.+.|
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~v   80 (241)
T 3ncl_A            1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRL   80 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTTEEEEEEEECSSSEEEECGGGGCCBTTBCTTCGGGEEEEESCSBTTCTTSTTCEEEEE
T ss_pred             CCCCeECCCCCCCcEEEEEcCCCceEEEEEEeeCCEEEEcHHhcccCCCccccCCceEEEEEeccccccCCCCCceEEEE
Confidence            6899999999999999998654 589999999999999999999654      23678899998776543 234588999


Q ss_pred             eEEEECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--
Q psy10841        118 SRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--  195 (286)
Q Consensus       118 ~~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--  195 (286)
                      +++++||+|+.....+|||||||++|+.|++.++|||||........+..++++|||.+...+.....+++..+.+++  
T Consensus        81 ~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~piclp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~  160 (241)
T 3ncl_A           81 KRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQT  160 (241)
T ss_dssp             EEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEECCHH
T ss_pred             EEEEECCCCCCCCCCCcEEEEEECCCCcccCccCceEcCCcccCCCCCCEEEEEEecccCCCCCcCceeeEEeEEEECHH
Confidence            999999999999889999999999999999999999999866666678999999999987666667789999999988  


Q ss_pred             ccccccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhh
Q psy10841        196 ACKHYED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN  273 (286)
Q Consensus       196 ~c~~~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~  273 (286)
                      .|+..+.  ..+.+||++......+.|.|||||||++...  +++|+|+||+||+..|+..+.|++||||++|++||+++
T Consensus       161 ~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~--~g~~~l~Gi~S~g~~c~~~~~p~vyt~v~~y~~WI~~~  238 (241)
T 3ncl_A          161 TCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEA--DGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN  238 (241)
T ss_dssp             HHHHHSTTTCCTTEEEEECTTCSSBCCTTCTTCEEEEECT--TSCEEEEEEEEECSSSSCTTCCEEEEESGGGHHHHHHH
T ss_pred             HhhhhcccCCCCCeEEeCCCCCCCccCCCcCCCCEEEEcC--CCcEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHH
Confidence            5876543  5678999987666788999999999997653  67999999999999998878899999999999999998


Q ss_pred             hc
Q psy10841        274 SE  275 (286)
Q Consensus       274 ~~  275 (286)
                      ++
T Consensus       239 ~~  240 (241)
T 3ncl_A          239 TG  240 (241)
T ss_dssp             HC
T ss_pred             hC
Confidence            75

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=100.00  E-value=4.3e-53  Score=356.00  Aligned_cols=227  Identities=32%  Similarity=0.634  Sum_probs=197.0

Q ss_pred             eecCeeCCCCccceEEEEeeCC--eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEEC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDG--FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMH  123 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~--~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~h  123 (286)
                      |+||+++..++|||+|+|+..+  .++|+||||+++||||||||+.......+.|++|..+........+.+.|+++++|
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h   80 (238)
T 1ym0_A            1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEHDSSAASTVRQTHDVDSIFVN   80 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEEGGGTEEEEEEEEEETTEEEECHHHHTTCCGGGEEEEESCSBTTSCCSSCEEEEEEEEEEC
T ss_pred             CCCCEECCCCccCCEEEEEeCCCCceEEEEEEeeCCEEEECHHhCCCCCCceEEEEEcccccCCCCCCceEEEEEEEEEC
Confidence            6899999999999999998765  78999999999999999999987666788999998887665556788999999999


Q ss_pred             CCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCC-CccceeEeeeecc--ccccc
Q psy10841        124 SMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKHY  200 (286)
Q Consensus       124 p~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~-~~~l~~~~~~~~~--~c~~~  200 (286)
                      |+|+.....+|||||||++|+.|++.++|||||...... .+..++++|||.+...+.. +..|+++.+++++  +|+..
T Consensus        81 p~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~-~~~~~~~~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~  159 (238)
T 1ym0_A           81 ENYDPATLENDVSVIKTAVAITFDINVGPICAPDPANDY-VYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAV  159 (238)
T ss_dssp             TTCCTTTCTTCCEEEEESSCCCCSSSCCCCBCCCTTCCC-TTCEEEEEESCCSSTTCCSCCSBCEEEEEEECCHHHHHHH
T ss_pred             CCCCCCCCcccEEEEEeCCCccccCcccccCCCCCcCCC-CCCceEEEeecCCCCCCCcCCccceEEEEEeeCHHHHhHh
Confidence            999998889999999999999999999999999754433 6789999999988665544 6789999999988  58765


Q ss_pred             cc---CCCCEEEEeeCCCC--CCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        201 ED---RIADVICAGMPQGG--RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       201 ~~---~~~~~~C~~~~~~~--~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                      +.   ..+.+||++.....  .+.|.|||||||++..  .+++|+|+||+||+..|. .+.|++||||+.|++||+++++
T Consensus       160 ~~~~~~~~~~~Ca~~~~~~~~~~~C~GDsGgPL~~~~--~~~~~~l~Gi~S~g~~C~-~~~p~vyt~v~~~~~WI~~~i~  236 (238)
T 1ym0_A          160 YTSDTIYDDMICATDNTGMTDRDSCQGDSGGPLSVKD--GSGIFSLVGIVSWGIGCA-SGYPGVYSRVGFHAGWITDTIT  236 (238)
T ss_dssp             CTTSCCCTTEEEEECSSCSSSCBCCTTTTTCEEEEEC--TTCCEEEEEEEEECSSSS-SSSCEEEEEHHHHHHHHHHHHH
T ss_pred             hcccccCCCeEEecCCCCCCcCccCCCccCCeeEEEC--CCCCEEEEEEEeECCCCC-CCCCcEEEEHHHhHHHHHHHhc
Confidence            53   56789999864433  7899999999999875  368899999999999998 5789999999999999999987


Q ss_pred             c
Q psy10841        276 R  276 (286)
Q Consensus       276 ~  276 (286)
                      +
T Consensus       237 ~  237 (238)
T 1ym0_A          237 N  237 (238)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=100.00  E-value=2e-52  Score=350.66  Aligned_cols=224  Identities=35%  Similarity=0.794  Sum_probs=193.7

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCC-CceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFE-KHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~-~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |+||+++..++|||+|+|+.++.++|+||||+++||||||||+.... ...+.|.+|....    ...+.+.|+++++||
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAhC~~~~~~~~~~~v~~G~~~~----~~~~~~~v~~i~~hp   76 (232)
T 2oq5_A            1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTIK----PSKMKRGLRRIIVHE   76 (232)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGGSSCCCGGGEEEEESSBST----TCSEEEEEEEEEECT
T ss_pred             CCCCEECCCCCCCeeEEEEeCCCeeEEEEEEcCCEEEECHHHcCCCCCCceEEEEEeeEEC----CCceEEeEEEEEeCC
Confidence            68999999999999999998888999999999999999999997643 3567888886542    245778999999999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccccc-
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYE-  201 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~-  201 (286)
                      +|+.....+|||||||++|+.|++.++|||||........++.++++|||.+...+.....|+++.+++++  +|+..+ 
T Consensus        77 ~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~  156 (232)
T 2oq5_A           77 KYKHPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQA  156 (232)
T ss_dssp             TCCTTCCTTCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHHTSTTT
T ss_pred             CCCCCCCCCCEEEEEecCCCccCCceeEeECCCccccCCCCCEEEEEECCccCCCCCCCceeeEeEEEEeCHHHcCCccc
Confidence            99998889999999999999999999999999865555667899999999887666667889999999988  587532 


Q ss_pred             ---cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        202 ---DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       202 ---~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                         ...+.+||++......+.|.|||||||++..  .+++|+|+||+||+..|+..+.|++||||++|++||+++++
T Consensus       157 ~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~--~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  231 (232)
T 2oq5_A          157 YNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSD--ARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKTG  231 (232)
T ss_dssp             TTTCCCTTEEEEECTTCSSBCCTTCTTCEEEEEC--TTSCEEEEEEEEECSSSSBTTBCEEEEETGGGHHHHHHHHC
T ss_pred             cCCccCCCEEeecCCCCCCccCCCCCCCcEEEEC--CCCCEEEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHHhC
Confidence               2467899998755567899999999999864  36789999999999999877789999999999999999874

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=100.00  E-value=1.7e-52  Score=360.31  Aligned_cols=238  Identities=26%  Similarity=0.571  Sum_probs=197.9

Q ss_pred             cCCCCCCccCCCceecCeeCCCCccceEEEEeeCC-----eEEeEEEEeeCCEEEeccCCcCCC----CCceEEEEEeee
Q psy10841         33 TDMAGNPILGSGRVVGGKKAELGAWPWLIALYRDG-----FFHCGGVVLDESWVMTAAHCVDGF----EKHYFEVYAGML  103 (286)
Q Consensus        33 ~~~~~~~~~~~~~i~~g~~a~~~~~Pw~v~i~~~~-----~~~C~GtLIs~~~VLTaAhC~~~~----~~~~~~v~~g~~  103 (286)
                      ...||... ...||+||++|..++|||+|+|....     .++|+||||+++||||||||+.+.    ....+.|++|.+
T Consensus        11 ~~~CG~~~-~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~V~~G~~   89 (278)
T 2olg_A           11 PNDCGYQV-EADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAGRVLRVVGALNKVRLGEW   89 (278)
T ss_dssp             CSSCSCCC-CCCCSCCSSBCCTTSSTTEEEEEEECTTCCEEEEEEEEECSSSEEEECGGGTSTHHHHHTCEEEEEEESCS
T ss_pred             hhHhCCCC-CCCceECCEECCCCCCCceEEEEEecCCCCcceeEEEEEEeCCEEEEhHHhCCCcccccccceeEEEeCcc
Confidence            34677643 25699999999999999999996532     578999999999999999999652    124678999987


Q ss_pred             ecccCC-----------CCceEEeeeEEEECCCCCCCCC--CCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEE
Q psy10841        104 RRFSFS-----------PTEQVRPVSRIVMHSMFKRAEM--TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTA  170 (286)
Q Consensus       104 ~~~~~~-----------~~~~~~~v~~~~~hp~y~~~~~--~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~  170 (286)
                      +.....           ...+.+.|+++++||+|+....  .||||||||++|+.|+++++|||||........++.+++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~g~~~~v  169 (278)
T 2olg_A           90 NTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTV  169 (278)
T ss_dssp             BTTCSSCEETTTTEECSSCCEEECEEEEEECTTCCTTCSSCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEE
T ss_pred             cCCCCccccccccccCCCCceEEeeEEEEECCCCcCCCCCCCCeEEEEEECCCCcCCCCcCccCcCCCCCCcCCCCEEEE
Confidence            765432           2357789999999999987764  799999999999999999999999986655667899999


Q ss_pred             EEecccCCCCCCCccceeEeeeecc--ccccccc-----CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEE
Q psy10841        171 VGWGAVFEHGPDPDHMREVQVPILP--ACKHYED-----RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAG  243 (286)
Q Consensus       171 ~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~~-----~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvG  243 (286)
                      +|||.+.. +..+..++++.+++++  +|+..+.     ..+.+||++.. ...+.|.|||||||++..  .+++|+|+|
T Consensus       170 ~GWG~t~~-~~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~Ca~~~-~~~~~C~GDSGGPL~~~~--~~~~~~l~G  245 (278)
T 2olg_A          170 VGWGRTET-GQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGE-KAKDSCGGDSGGPLLAER--ANQQFFLEG  245 (278)
T ss_dssp             EESCCSSS-CCCCSBCEEEEEEBCCGGGGGGGGSSTTCCCCTTEEEECCT-TCTTCCCCCTTCEEEEEE--GGGEEEEEE
T ss_pred             EcCCcCCC-CCccchhhcccccccCHHHHHHHhccccccCCCceEeeecC-CCCeeCCCccCcceEEEc--CCCcEEEEE
Confidence            99998754 4466789999999988  5876553     56789999863 357899999999999973  267899999


Q ss_pred             EEEecCCCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        244 VVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       244 I~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                      |+|||..|+..+.|+|||||+.|++||+++++
T Consensus       246 IvS~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  277 (278)
T 2olg_A          246 LVSFGATCGTEGWPGIYTKVGKYRDWIEGNIR  277 (278)
T ss_dssp             EEEECCBCSTTCBCEEEEEGGGGHHHHHTTCC
T ss_pred             EEEECCCCCCCCCCcEEeEHHHHHHHHHHhhC
Confidence            99999999887889999999999999999875

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=100.00  E-value=2.2e-53  Score=361.19  Aligned_cols=232  Identities=34%  Similarity=0.664  Sum_probs=199.8

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCC-ceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~-~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |+||++|..++|||+|+|+.++.++|+||||+++||||||||+.+... ..+.|++|.++........+.+.|.++++||
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp   80 (254)
T 2bz6_H            1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPS   80 (254)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECGGGGTTCSCGGGEEEEESCCBTTCCCSCCEEEEEEEEEEET
T ss_pred             CCCCEECCCCCcCCEEEEEeCCCcEEEEEEecCCEEEECHHHcCCCCCcceEEEEECCcccCCCCCCcEEEEEEEEEECC
Confidence            689999999999999999988889999999999999999999976543 5689999988876655567889999999999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCC---CCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE---TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~---~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~  199 (286)
                      +|+.....+|||||||++++.|+++++|||||....   ....+..++++|||.+...+.....+++..+.+++  +|..
T Consensus        81 ~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~  160 (254)
T 2bz6_H           81 TYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQ  160 (254)
T ss_dssp             TCCTTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHHHH
T ss_pred             CCCCCCCcCcEEEEEECCccccCCCccceECCCCccccccccCCCcEEEEeCcccCCCCCCChhheeeeeeeecHHHHhh
Confidence            999988899999999999999999999999986432   12356789999999887666667789999999887  5865


Q ss_pred             cc-------cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHh
Q psy10841        200 YE-------DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS  272 (286)
Q Consensus       200 ~~-------~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~  272 (286)
                      .+       ...+.+||++......+.|.|||||||++..   +++|+|+||+||+..|...+.|++||||+.|++||++
T Consensus       161 ~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~---~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~  237 (254)
T 2bz6_H          161 QSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHY---RGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQK  237 (254)
T ss_dssp             HSCCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEEE---TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHH
T ss_pred             hhhccccCCccCCCEEeecCCCCCCccccccCCCceEEeE---CCEEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHH
Confidence            43       3467899998655567899999999999976   6789999999999999877889999999999999999


Q ss_pred             hhcccccc
Q psy10841        273 NSERAKVE  280 (286)
Q Consensus       273 ~~~~~~~~  280 (286)
                      +++....+
T Consensus       238 ~~~~~~~~  245 (254)
T 2bz6_H          238 LMRSEPRP  245 (254)
T ss_dssp             HHTSCCCS
T ss_pred             HHhccCCC
Confidence            99876543

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=100.00  E-value=2.2e-52  Score=352.36  Aligned_cols=226  Identities=35%  Similarity=0.732  Sum_probs=194.4

Q ss_pred             eecCeeCCCCccceEEEEee--CC--eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYR--DG--FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIV  121 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~--~~--~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~  121 (286)
                      |+||++|..++|||+|+|+.  .+  .++|+||||+++||||||||+..  ...+.|++|..+........+.+.|++++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~--~~~~~V~~G~~~~~~~~~~~~~~~v~~i~   78 (241)
T 1bru_P            1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISS--SRTYRVVLGRHSLSTNEPGSLAVKVSKLV   78 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCT--TSCEEEEESCSBSSSCCTTCEEEEEEEEE
T ss_pred             CCCCeECCCCCcCcEEEEEEecCCceeeEEEeEEeeCCEEEEcHHhccc--CCceEEEEEcccccCCCCccEEEEEEEEE
Confidence            68999999999999999975  33  47899999999999999999973  35788999988776555567889999999


Q ss_pred             ECCCCCCCCCC--CceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cc
Q psy10841        122 MHSMFKRAEMT--NDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC  197 (286)
Q Consensus       122 ~hp~y~~~~~~--~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c  197 (286)
                      +||+|+.....  +|||||||++|+.|++.++|||||........+..++++|||.+...+..+..|+++.+.+++  +|
T Consensus        79 ~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C  158 (241)
T 1bru_P           79 VHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATC  158 (241)
T ss_dssp             ECTTCCTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSTTSCCCSBCEEEEEEEECHHHH
T ss_pred             ECCCCCCCCCCCCCcEEEEEeCCCcccCCccCCcccCCCcCCCCCCCEEEEEEccccCCCCCCCccceeCEEEEecHHHh
Confidence            99999988766  999999999999999999999999865555677899999999887666667889999999988  58


Q ss_pred             ccc--c--cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC--CCCCCCCCeeEEeCCCcHHHHH
Q psy10841        198 KHY--E--DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWLM  271 (286)
Q Consensus       198 ~~~--~--~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~--~c~~~~~p~v~t~v~~~~~WI~  271 (286)
                      +..  +  ...+.+||++. ....+.|.|||||||++...  +++|+|+||+|||.  +|...+.|++||||++|++||+
T Consensus       159 ~~~~~~~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~~--~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~  235 (241)
T 1bru_P          159 SKPGWWGSTVKTNMICAGG-DGIISSCNGDSGGPLNCQGA--NGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWIN  235 (241)
T ss_dssp             TSTTTTGGGCCTTEEEECC-SSSSBCCTTCTTCEEEEECT--TSCEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHH
T ss_pred             CcccccCCcCCCceEeecC-CCCCccCCCCCCCcEEEECC--CCCEEEEEEEEEcCCCCCCCCCCCcEEEEHHHhHHHHH
Confidence            764  2  35678999984 45678999999999998753  67899999999997  7887778999999999999999


Q ss_pred             hhhcc
Q psy10841        272 SNSER  276 (286)
Q Consensus       272 ~~~~~  276 (286)
                      +++++
T Consensus       236 ~~i~~  240 (241)
T 1bru_P          236 SVIAN  240 (241)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99875

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=100.00  E-value=2.9e-52  Score=351.37  Aligned_cols=227  Identities=29%  Similarity=0.590  Sum_probs=193.0

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|+|+.++.++|+||||+++||||||||+.... ..+.|++|..+...   ..+.+.|+++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~-~~~~v~~G~~~~~~---~~~~~~v~~i~~Hp~   76 (240)
T 2zgc_A            1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQRM-AQLRLVLGLHTLDS---PGLTFHIKAAIQHPR   76 (240)
T ss_dssp             CBTCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGGCSCG-GGEEEEESCSBSSS---CCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCcCcEEEEEeCCCeEEEEEEEcCCEEEEcHHhcCCCC-CCEEEEecccccCC---CCeEEEEEEEEECCC
Confidence            68999999999999999998888999999999999999999997643 36889999776543   347889999999999


Q ss_pred             CCCCC-CCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccc--c
Q psy10841        126 FKRAE-MTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH--Y  200 (286)
Q Consensus       126 y~~~~-~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~--~  200 (286)
                      |+... ..+|||||||++++.|++.++|||||........+..++++|||.+...+..+..|+++.+++++  +|+.  .
T Consensus        77 y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~  156 (240)
T 2zgc_A           77 YKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRF  156 (240)
T ss_dssp             CBCTTSCBSCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEECCBSSTTCCBCSBCEEEEEEECCHHHHTSTTT
T ss_pred             CCCCCCCcccEEEEEeCCcccCCCceeeeEcCCCCCCCCCCCEEEEEECCcccCCCCcCceeeeeeeeecCHHHhCCccc
Confidence            99876 88999999999999999999999999866555678999999999886666667889999999998  5876  3


Q ss_pred             c--cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEec-CCCCCCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        201 E--DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       201 ~--~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~-~~c~~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                      +  ...+.+||++......+.|.|||||||++..     .|+|+||+||+ ..|...+.|++||||++|++||+++++..
T Consensus       157 ~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-----~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~~~  231 (240)
T 2zgc_A          157 WNGSLSPSMVCLAADSKDQAPCKGDSGGPLVCGK-----GRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTGRS  231 (240)
T ss_dssp             TTTCCCTTEEEEECSSTTCBCCTTCTTCEEEETT-----TTEEEEEECCCCSSTTCTTSCCEEEESGGGHHHHHHHHCCC
T ss_pred             cCCCCCCceEeeccCCCCCccCCCCccCeeEECC-----CCEEEEEEEECCCCCCCCCCCcEEEEHHHhHHHHHHHHhhc
Confidence            3  2567899998655567899999999999832     37899999999 58987778999999999999999999877


Q ss_pred             cccc
Q psy10841        278 KVEC  281 (286)
Q Consensus       278 ~~~~  281 (286)
                      ..+-
T Consensus       232 ~~~~  235 (240)
T 2zgc_A          232 ALEH  235 (240)
T ss_dssp             ----
T ss_pred             chhh
Confidence            6653

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=100.00  E-value=6.2e-52  Score=357.62  Aligned_cols=242  Identities=31%  Similarity=0.614  Sum_probs=200.6

Q ss_pred             CCCCCCccC----CCceecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCC-CceEEEEEeeeecccC
Q psy10841         34 DMAGNPILG----SGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFE-KHYFEVYAGMLRRFSF  108 (286)
Q Consensus        34 ~~~~~~~~~----~~~i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~-~~~~~v~~g~~~~~~~  108 (286)
                      ..||.....    ..||+||+++..++|||+|+|+.+ .++|+||||+++||||||||+.+.. ...+.|++|..+....
T Consensus        20 ~~CG~~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~-~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~   98 (283)
T 1yc0_A           20 QACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAIYIG-DSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRT   98 (283)
T ss_dssp             -CCSCCSCC-------CBSCEECCTTSSTTEEEEEET-TEEEEEEEEETTEEEECGGGGTTCCCGGGEEEEESCCBTTCC
T ss_pred             CCcCCcccccccCcCceECCeECCCCCCCeEEEEEcC-CcEEEEEEeeCCEEEECHHHcCCCCCCceEEEEEeeeecccC
Confidence            456655432    258999999999999999999875 5889999999999999999997653 3678999998887665


Q ss_pred             CCCceEEeeeEEEECCCCCC-CCCCCceEEEEecCc----cccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCC-C
Q psy10841        109 SPTEQVRPVSRIVMHSMFKR-AEMTNDLALLQLAAP----LRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGP-D  182 (286)
Q Consensus       109 ~~~~~~~~v~~~~~hp~y~~-~~~~~DiAllkL~~~----i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~-~  182 (286)
                      ....+.+.|+++++||+|+. ....+|||||||+++    +.|+++++|||||........+..++++|||.+..... .
T Consensus        99 ~~~~~~~~v~~i~~hp~y~~~~~~~~DIALl~L~~~~~~~v~~~~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~~~~  178 (283)
T 1yc0_A           99 TDVTQTFGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGY  178 (283)
T ss_dssp             CSSCEEECEEEEEECTTCCTTSTTTTCCEEEEECCBTTBSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCSC
T ss_pred             CCceEEEeeEEEEecCccccCCCCCCceEEEEeCCCccccccccCceeeeECCCCcCCCCCCCEEEEEEeCccCCCCCcc
Confidence            55678899999999999998 678899999999999    78999999999998655566789999999998865433 4


Q ss_pred             CccceeEeeeecc--ccccc--c--cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCC
Q psy10841        183 PDHMREVQVPILP--ACKHY--E--DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNE  256 (286)
Q Consensus       183 ~~~l~~~~~~~~~--~c~~~--~--~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~  256 (286)
                      +..|+++.+.+++  +|+..  +  ...+.+||++......+.|.|||||||++..   +++|+|+||+|||..|+..+.
T Consensus       179 ~~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~iCa~~~~~~~~~C~GDSGgPL~~~~---~g~~~l~GIvS~g~~C~~~~~  255 (283)
T 1yc0_A          179 SSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEK---NGVAYLYGIISWGDGCGRLHK  255 (283)
T ss_dssp             CSBCEEEEEEBCCHHHHTSTTTTGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEE---TTEEEEEEEEEECSTTTCTTC
T ss_pred             CchheEeEEEEECHHHhcCccccCCcCCCCEEeeCCCCCCCccCCCCCCCceEEEE---CCcEEEEEEEEECCCCCCCCC
Confidence            6789999999988  58753  2  2567899998655567899999999999976   689999999999999987788


Q ss_pred             CeeEEeCCCcHHHHHhhhccccc
Q psy10841        257 PGVYTRVSQFVPWLMSNSERAKV  279 (286)
Q Consensus       257 p~v~t~v~~~~~WI~~~~~~~~~  279 (286)
                      |++||||++|++||+++++....
T Consensus       256 p~vyt~V~~y~~WI~~~i~~~~~  278 (283)
T 1yc0_A          256 PGVYTRVANYVDWINDRIRPPRR  278 (283)
T ss_dssp             CEEEEEGGGGHHHHHHHCC----
T ss_pred             CeEEEEhhhHHHHHHHHhcCCCC
Confidence            99999999999999999987654

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=100.00  E-value=4.9e-52  Score=352.45  Aligned_cols=227  Identities=32%  Similarity=0.685  Sum_probs=193.1

Q ss_pred             eecCeeCCCCccceEEEEee------CCeEEeEEEEeeCCEEEeccCCcCCC-CCceEEEEEeeeecccCCCCceEEeee
Q psy10841         46 VVGGKKAELGAWPWLIALYR------DGFFHCGGVVLDESWVMTAAHCVDGF-EKHYFEVYAGMLRRFSFSPTEQVRPVS  118 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~------~~~~~C~GtLIs~~~VLTaAhC~~~~-~~~~~~v~~g~~~~~~~~~~~~~~~v~  118 (286)
                      |+||++|..++|||+|+|+.      ...++|+||||+++||||||||+... ....+.|++|..+........+.+.|+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~   80 (252)
T 1rtf_B            1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTVILGRTYRVVPGEEEQKFEVE   80 (252)
T ss_dssp             CBSSEECCGGGSTTEEEEEEEC----CEEEEEEEEECSSSEEEECGGGGTTCCCGGGEEEEESCSBSSSCCTTCEEEEEE
T ss_pred             CCCCeECCCCCcCCEEEEEEecCCCCCCCEEEEEEEEeCCEEEECHHHCCCCCCcccEEEEeCcccccCCCCcceEEEEE
Confidence            68999999999999999974      23579999999999999999999764 346788999987766555567889999


Q ss_pred             EEEECCCCCCCCCCCceEEEEecCc----cccCCceeeeecCCCCCCCCCCCceEEEEecccCCCC-CCCccceeEeeee
Q psy10841        119 RIVMHSMFKRAEMTNDLALLQLAAP----LRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPI  193 (286)
Q Consensus       119 ~~~~hp~y~~~~~~~DiAllkL~~~----i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~  193 (286)
                      ++++||+|+.....+|||||||++|    +.|++.++|||||........+..++++|||.+.... ..+..|+++.+++
T Consensus        81 ~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~  160 (252)
T 1rtf_B           81 KYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRL  160 (252)
T ss_dssp             EEEECTTCCTTTCTTCCEEEEECCSSSCCSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEEE
T ss_pred             EEEeCCCCCcCCCCCCEEEEEECCccccccccCCceeceeCCCccccCCCCCEEEEEEcCCCCCCCccccchheEeeeEE
Confidence            9999999999889999999999999    8899999999999865555677899999999875543 3467899999999


Q ss_pred             cc--cccccc----cCCCCEEEEeeCCCC------CCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEE
Q psy10841        194 LP--ACKHYE----DRIADVICAGMPQGG------RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYT  261 (286)
Q Consensus       194 ~~--~c~~~~----~~~~~~~C~~~~~~~------~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t  261 (286)
                      ++  .|+..+    ...+.+||++.....      .+.|.|||||||++..   +++|+|+||+||+..|...+.|++||
T Consensus       161 ~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~~~~~~~C~GDsGgPL~~~~---~~~~~l~Gi~S~g~~C~~~~~p~vyt  237 (252)
T 1rtf_B          161 YPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLN---DGRMTLVGIISWGLGCGQKDVPGVYT  237 (252)
T ss_dssp             CCGGGSSTTTTTTCCCCTTEEEEECCC------CCCBCCTTCTTCEEEEEE---TTEEEEEEEEEECSSSSCTTCCEEEE
T ss_pred             ecHHHhhhhhccCCCCCCCEEEecCCCCCCccCCCCccccCCCcCceEEEe---CCcEEEEEEEEEcCCCCCCCCCeEEE
Confidence            88  587643    256789999864433      6899999999999976   68899999999999998777899999


Q ss_pred             eCCCcHHHHHhhhc
Q psy10841        262 RVSQFVPWLMSNSE  275 (286)
Q Consensus       262 ~v~~~~~WI~~~~~  275 (286)
                      ||++|++||+++++
T Consensus       238 ~V~~y~~WI~~~~~  251 (252)
T 1rtf_B          238 KVTNYLDWIRDNMR  251 (252)
T ss_dssp             EGGGGHHHHHHHCC
T ss_pred             EHHHHHHHHHHhcC
Confidence            99999999999886

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=100.00  E-value=4.6e-52  Score=352.12  Aligned_cols=227  Identities=32%  Similarity=0.694  Sum_probs=197.2

Q ss_pred             eecCeeCCCCccceEEEEee-CCeEEeEEEEeeCCEEEeccCCcCC--------------CCCceEEEEEeeeecccCCC
Q psy10841         46 VVGGKKAELGAWPWLIALYR-DGFFHCGGVVLDESWVMTAAHCVDG--------------FEKHYFEVYAGMLRRFSFSP  110 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~-~~~~~C~GtLIs~~~VLTaAhC~~~--------------~~~~~~~v~~g~~~~~~~~~  110 (286)
                      |+||+++..++|||+|+|.. ++.++|+||||+++||||||||+..              .....+.|++|..+......
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~   80 (251)
T 3gov_B            1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDE   80 (251)
T ss_dssp             CBTCEECCTTSCTTEEEEEETTCCEEEEEEEETTTEEEECGGGGBCCCCTTSCCCCGGGBCCGGGEEEEESCCBSSSCCS
T ss_pred             CCCCEECCCCCcCeEEEEeccCCCeeEEEEEecCCEEEECHhhccccccccccccccccccccccEEEEecceeccCCCC
Confidence            68999999999999999976 5678999999999999999999965              34468899999887765556


Q ss_pred             CceEEeeeEEEECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEe
Q psy10841        111 TEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQ  190 (286)
Q Consensus       111 ~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~  190 (286)
                      ..+.+.|+++++||+|+.....+|||||||++++.|++.++|||||....  ..+..++++|||.+.. +..+..|+++.
T Consensus        81 ~~~~~~v~~i~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~picLp~~~~--~~~~~~~v~GwG~~~~-~~~~~~L~~~~  157 (251)
T 3gov_B           81 NEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQ--QEGAMVIVSGWGKQFL-QRFPETLMEIE  157 (251)
T ss_dssp             SCEEECEEEEEECTTCBTTTTBTCCEEEEESSCCCCSSSCCCCBCCSSCC--CTTCEEEEEECSCCTT-SCCCSBCEEEE
T ss_pred             cceEeeeEEEEECCCCCCCCCCCCEEEEEeCCcccCCCceEEeECCCCCC--CCCCEEEEEcCCCCCC-CCCCccceEEe
Confidence            77889999999999999999999999999999999999999999997443  5678999999998754 34677899999


Q ss_pred             eeecc--ccccccc-----CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeC
Q psy10841        191 VPILP--ACKHYED-----RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRV  263 (286)
Q Consensus       191 ~~~~~--~c~~~~~-----~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v  263 (286)
                      +.+++  .|+..+.     ..+.+||++......+.|.|||||||++... .+++|+|+||+||+..|+..+.|++||||
T Consensus       158 ~~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~-~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V  236 (251)
T 3gov_B          158 IPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNR-ERGQWYLVGTVSWGDDCGKKDRYGVYSYI  236 (251)
T ss_dssp             EEEECHHHHHHHTTTTTCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECT-TTCCEEEEEEEEECSSSSCSSCCEEEEET
T ss_pred             eEEECHHHhhhhhhhccCCCCCCcEEecCCCCCCccCCCCCCCeEEeeeC-CCCcEEEEEEEEECCCCCCCCCCEEEEEH
Confidence            99998  5876543     5678999987666789999999999998742 36799999999999999987889999999


Q ss_pred             CCcHHHHHhhhcc
Q psy10841        264 SQFVPWLMSNSER  276 (286)
Q Consensus       264 ~~~~~WI~~~~~~  276 (286)
                      ++|++||+++++.
T Consensus       237 ~~~~~WI~~~~~~  249 (251)
T 3gov_B          237 HHNKDWIQRVTGV  249 (251)
T ss_dssp             TTTHHHHHHHHCC
T ss_pred             HHhHHHHHHHhcc
Confidence            9999999999864

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=100.00  E-value=4.4e-52  Score=350.30  Aligned_cols=225  Identities=36%  Similarity=0.653  Sum_probs=194.0

Q ss_pred             eecCeeCCCCccceEEEEee-CC---eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYR-DG---FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIV  121 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~-~~---~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~  121 (286)
                      |+||++|..++|||+|+|+. ++   .++|+||||+++||||||||+...  ..+.|++|..+........+.+.|++++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLI~~~~VLTAAHC~~~~--~~~~v~~G~~~~~~~~~~~~~~~v~~i~   78 (240)
T 1gvk_B            1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRE--LTFRVVVGEHNLNQNNGTEQYVGVQKIV   78 (240)
T ss_dssp             CBTCEECCTTSCTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGGCSC--CCEEEEESCSBTTSCCSCCEEEEEEEEE
T ss_pred             CCCCeECCCCCcCEEEEEEecCCCccCceEEEEEeeCCEEEECHHHCCCC--cceEEEECCeecccCCCcceEEEEEEEE
Confidence            68999999999999999974 33   589999999999999999999653  5678999988776555556889999999


Q ss_pred             ECCCCCCCCC--CCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cc
Q psy10841        122 MHSMFKRAEM--TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC  197 (286)
Q Consensus       122 ~hp~y~~~~~--~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c  197 (286)
                      +||+|+....  .+|||||||++|+.|+++++|+|||........+..++++|||.+...+..+..|+++.+++++  .|
T Consensus        79 ~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C  158 (240)
T 1gvk_B           79 VHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAIC  158 (240)
T ss_dssp             ECTTCCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCCEEEEESCBSSTTCCBCSBCEEEECCEECHHHH
T ss_pred             ECCCCCCCCCCCCCcEEEEEECCccccCCCccceecCCCCCCCCCCCEEEEEecCcCCCCCCcchhccEEEEEEEcHHHh
Confidence            9999998876  8999999999999999999999999865555678899999999987666667889999999988  58


Q ss_pred             ccc--c--cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC--CCCCCCCCeeEEeCCCcHHHHH
Q psy10841        198 KHY--E--DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWLM  271 (286)
Q Consensus       198 ~~~--~--~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~--~c~~~~~p~v~t~v~~~~~WI~  271 (286)
                      +..  +  ...+.+||++. ....+.|.|||||||++..   +++|+|+||+||+.  +|...+.|++||||++|++||+
T Consensus       159 ~~~~~~~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~---~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~  234 (240)
T 1gvk_B          159 SSSSYWGSTVKNSMVCAGG-DGVRSGCQGDSGGPLHCLV---NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWIN  234 (240)
T ss_dssp             TSTTTTGGGCCTTEEEECC-SSSCBCCTTCTTCEEEEEE---TTEEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHH
T ss_pred             ccccccCccCCcceEeecC-CCCCcccCCCCcCceEEEE---CCcEEEEEEEEEeCCCCCCCCCCCcEEEeHHHHHHHHH
Confidence            753  2  25678999984 4567899999999999976   67899999999995  7987778999999999999999


Q ss_pred             hhhcc
Q psy10841        272 SNSER  276 (286)
Q Consensus       272 ~~~~~  276 (286)
                      +++++
T Consensus       235 ~~i~~  239 (240)
T 1gvk_B          235 NVIAS  239 (240)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99875

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=100.00  E-value=6.1e-52  Score=349.39  Aligned_cols=226  Identities=29%  Similarity=0.605  Sum_probs=194.9

Q ss_pred             ceecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCC-CCceEEEEEeeeecccCCCCceEEeeeEEEEC
Q psy10841         45 RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGF-EKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMH  123 (286)
Q Consensus        45 ~i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~-~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~h  123 (286)
                      ||+||+++..++|||+|+|+.++.++|+||||+++||||||||+... ....+.|++|..+........+.+.|+++++|
T Consensus         2 rIvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h   81 (240)
T 1mza_A            2 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIPF   81 (240)
T ss_dssp             CCCCCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGSCTTCSCSCEEEEESCSBSSSCCTTCEEEEEEEEEEC
T ss_pred             ceECCEECCCCCCCeEEEEeeCCceEEEEEEecCCEEEECHHhCCCCCCCCCeEEEeCceecCCCCCceEEEEEEEEEeC
Confidence            89999999999999999999888899999999999999999998643 34678899998877655555688999999999


Q ss_pred             CCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCC-CCccceeEeeeecc--ccc--
Q psy10841        124 SMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGP-DPDHMREVQVPILP--ACK--  198 (286)
Q Consensus       124 p~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~-~~~~l~~~~~~~~~--~c~--  198 (286)
                      |+|+.....+|||||||++++.|++.++|||||.. .....+..++++|||.+...+. .+..|+++.+++++  .|+  
T Consensus        82 p~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~-~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~  160 (240)
T 1mza_A           82 SRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSK-TSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQ  160 (240)
T ss_dssp             CCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSS-CCCCTTCEEEEEECCCSSTTCSSCCSBCEEEEEEECCHHHHTST
T ss_pred             CCccCCCCCceEEEEEeCCCcccCCceeeeecCCc-ccCCCCCEEEEEeCCcCCCCCCCccccceEeEEEEeCHHHcCCc
Confidence            99999888999999999999999999999999874 2345678999999998865554 56789999999988  587  


Q ss_pred             ccc----cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCC-cHHHHHhh
Q psy10841        199 HYE----DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQ-FVPWLMSN  273 (286)
Q Consensus       199 ~~~----~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~-~~~WI~~~  273 (286)
                      ..+    ...+.+||++......+.|.|||||||++..       +|+||+||+..|+..+.|++||+|++ |++||+++
T Consensus       161 ~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGGPL~~~~-------~l~Gi~S~g~~C~~~~~p~vyt~v~~~y~~WI~~~  233 (240)
T 1mza_A          161 SYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICKG-------VFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSN  233 (240)
T ss_dssp             TTTTTTTCCCTTEEEEECTTSCCCCCTTCTTCEEEETT-------EEEEEECSSCCSSCTTCCEEEEECCHHHHHHHHHH
T ss_pred             ceeCCCCcCCCCeEeecCCCCCCccCCCCCCCeeEECC-------EEEEEEEECCCCCCCCCCcEEEeChHHHHHHHHHh
Confidence            333    2567899998655667899999999999832       69999999999988788999999999 99999999


Q ss_pred             hcccc
Q psy10841        274 SERAK  278 (286)
Q Consensus       274 ~~~~~  278 (286)
                      ++...
T Consensus       234 ~~~~~  238 (240)
T 1mza_A          234 LVPPH  238 (240)
T ss_dssp             TCCSC
T ss_pred             ccCCC
Confidence            97654

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=100.00  E-value=2e-52  Score=354.52  Aligned_cols=231  Identities=30%  Similarity=0.642  Sum_probs=192.0

Q ss_pred             eecCeeCCCCccceEEEEeeC-CeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRD-GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |+||+++..++|||+|.|+.. +.++|+||||+++||||||||+...  ..+.|++|.++........+.+.|+++++||
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGsLI~~~~VLTAAHC~~~~--~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp   78 (250)
T 1aut_C            1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDES--KKLLVRLGEYDLRRWEKWELDLDIKEVFVHP   78 (250)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTSCEEEEEEEEETTEEEECGGGSSSC--SCCEEEESCCBTTCCCTTCEEEEEEEEEECT
T ss_pred             CCCCEECCCCCCCCEEEEecCCCceEEEEEEeeCCEEEEChHHcCCC--CceEEEEcccccCCCCCccEEEEEEEEEECC
Confidence            689999999999999999754 4689999999999999999999653  4568999988776555567889999999999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCC----CCCCCCceEEEEecccCCCCCCC-----ccceeEeeeecc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE----TPEPYSTCTAVGWGAVFEHGPDP-----DHMREVQVPILP  195 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~----~~~~~~~~~~~Gwg~~~~~~~~~-----~~l~~~~~~~~~  195 (286)
                      +|+.....+|||||||++|+.|+++++|||||....    ....+..++++|||.+.......     ..|+++.+++++
T Consensus        79 ~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~L~~~~~~i~~  158 (250)
T 1aut_C           79 NYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVP  158 (250)
T ss_dssp             TCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSSBCEEEEEEEEC
T ss_pred             CCCCCCCCCcEEEEEECCcccCCCceeeeEcCCCccccccccCCCCEEEEEEeCCCCCCCccccccccceeeEEEEEEec
Confidence            999988899999999999999999999999986421    23567899999999875543332     368889998887


Q ss_pred             --ccccccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHH
Q psy10841        196 --ACKHYED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLM  271 (286)
Q Consensus       196 --~c~~~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~  271 (286)
                        +|+..+.  ..+.+||++......+.|.|||||||++..   +++|+|+||+|||.+|+..+.|++||||++|++||+
T Consensus       159 ~~~C~~~~~~~~~~~~~Cag~~~~~~~~C~GDSGGPL~~~~---~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~  235 (250)
T 1aut_C          159 HNECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASF---HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIH  235 (250)
T ss_dssp             HHHHHHHCSSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEE---TTEEEEEEEEEECSSSSCTTCCEEEECGGGTHHHHH
T ss_pred             HHHhhHHhccCCCCCEEEeCCCCCCCCCCCCCCchheEEEE---CCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHH
Confidence              5876543  567899998655567899999999999976   678999999999999987788999999999999999


Q ss_pred             hhhccccccc
Q psy10841        272 SNSERAKVEC  281 (286)
Q Consensus       272 ~~~~~~~~~~  281 (286)
                      +++++...+.
T Consensus       236 ~~~~~~~~~~  245 (250)
T 1aut_C          236 GHIRDKEAPQ  245 (250)
T ss_dssp             HHHC------
T ss_pred             HHhhcccCCc
Confidence            9998765443

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=100.00  E-value=4.8e-52  Score=348.77  Aligned_cols=222  Identities=32%  Similarity=0.627  Sum_probs=192.0

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|+|..++.++|+||||+++||||||||+.+   ..+.|++|..+........+.+.|+++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~---~~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~   77 (234)
T 1orf_A            1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLN---KRSQVILGAHSITREEPTKQIMLVKKEFPYPC   77 (234)
T ss_dssp             CBSCEECCTTSSTTEEEEECSSSCEEEEEEEETTEEEECTTCCCC---TTCEEEESCSBSSSCCTTCEEECEEEEEECTT
T ss_pred             CCCCEECCCCCCCeEEEEccCCceEEEEEEeeCCEEEEchhcCCC---CCceEEEeccccCcCCCceEEEEEEEEEcCCC
Confidence            689999999999999999887789999999999999999999964   34678999887765555568899999999999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccc--ccc
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK--HYE  201 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~--~~~  201 (286)
                      |+.....+|||||||++|+.|+++++|||||........+..++++|||.+...+..+..|+++.+++++  +|+  ..+
T Consensus        78 y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~  157 (234)
T 1orf_A           78 YDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHY  157 (234)
T ss_dssp             CCTTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEEECHHHHTSTTTT
T ss_pred             CCCCCCCCCEEEEEECCcCccCCCeeeeecCCCcCCCCCCCEEEEEECCcCCCCCCccccceEeEEEeeCHHHcCCcccc
Confidence            9998899999999999999999999999999866555678899999999887666667889999999988  587  333


Q ss_pred             cCCC----CEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC--CCCCCCCCeeEEeCC-CcHHHHHhhh
Q psy10841        202 DRIA----DVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVS-QFVPWLMSNS  274 (286)
Q Consensus       202 ~~~~----~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~--~c~~~~~p~v~t~v~-~~~~WI~~~~  274 (286)
                      ....    .+||++......+.|.|||||||++..       +|+||+|||.  .|...+.|++||||+ +|++||++++
T Consensus       158 ~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-------~l~GI~S~g~~~~C~~~~~p~vyt~v~~~~~~WI~~~~  230 (234)
T 1orf_A          158 NFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEG-------VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTI  230 (234)
T ss_dssp             TTTTCCCTTEEEEECSSCCCBCCTTCTTCEEEETT-------EEEEEEEECCTTCTTCTTSCEEEEECCHHHHHHHHHHH
T ss_pred             ccCCccCCCEEEecCCCCCCcCCCCCCCCeEEECC-------EEEEEEEEcCCCCCCCCCCCCEEEEchHHHHHHHHHHH
Confidence            3444    899998655678999999999999832       6999999998  898778899999999 9999999998


Q ss_pred             ccc
Q psy10841        275 ERA  277 (286)
Q Consensus       275 ~~~  277 (286)
                      +..
T Consensus       231 ~~~  233 (234)
T 1orf_A          231 KGA  233 (234)
T ss_dssp             CC-
T ss_pred             Hhc
Confidence            753

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=100.00  E-value=1e-52  Score=354.31  Aligned_cols=229  Identities=32%  Similarity=0.630  Sum_probs=193.8

Q ss_pred             eecCeeCCCCccceEEEEee-CCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYR-DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~-~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |+||+++..++|||+|+|+. ++.++|+||||+++||||||||+...  ..+.|++|..+........+.+.|+++++||
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAhC~~~~--~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp   78 (241)
T 2jkh_A            1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHN   78 (241)
T ss_dssp             CBSSEECCTTSSTTEEEEECTTSCEEEEEEECSSSEEEECGGGGGSC--SSCEEEESCSBTTCCCSCCEEECEEEEEECT
T ss_pred             CCCCEECCCCCcCcEEEEEcCCCCcEEEEEEeeCCEEEEcHHHcCCC--CcEEEEECCccCCCCCCCcEEEEeEEEEeCC
Confidence            68999999999999999974 45689999999999999999999653  3578999988766555567889999999999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCC---CCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE---TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~---~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~  199 (286)
                      +|+.....+|||||||++|+.|+++++|||||....   ....+..++++|||.+...+.....|++..+.+++  .|+.
T Consensus        79 ~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~  158 (241)
T 2jkh_A           79 RFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKL  158 (241)
T ss_dssp             TCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHHHH
T ss_pred             CCCCCCCCCcEEEEEECCcccCCCCEeeeEcCCCCcccccccCCCeEEEEecCCCCCCCCcCccccEeeeccccHHHhcc
Confidence            999988899999999999999999999999987432   13456889999999887666667789999999988  5876


Q ss_pred             ccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        200 YED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       200 ~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                      .+.  ..+.+||++......+.|.|||||||++..   +++|+|+||+||+..|...+.|++||||+.|++||+++++..
T Consensus       159 ~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~---~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  235 (241)
T 2jkh_A          159 SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRF---KDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTR  235 (241)
T ss_dssp             HCSSCCCTTEEEESCSSSSCBCCTTTTTCEEEEEE---TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHTC--
T ss_pred             cccCcCCCCeEEeeCCCCCCccCcCcCCCeeEEEE---CCEEEEEEEEEECCCCCCCCCceEEEEhHHHHHHHHHHhccc
Confidence            543  567899998655567899999999999976   678999999999999987788999999999999999999875


Q ss_pred             cc
Q psy10841        278 KV  279 (286)
Q Consensus       278 ~~  279 (286)
                      ..
T Consensus       236 ~~  237 (241)
T 2jkh_A          236 GL  237 (241)
T ss_dssp             --
T ss_pred             cC
Confidence            43

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=100.00  E-value=8.9e-52  Score=350.05  Aligned_cols=231  Identities=31%  Similarity=0.633  Sum_probs=196.1

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCC-CceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFE-KHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~-~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |+||+++..++|||+|+|+.. .++|+||||+++||||||||+.... ...+.|++|..+........+.+.|+++++||
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~-~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~hp   79 (248)
T 2r0l_A            1 IIGGSSSLPGSHPWLAAIYIG-DSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYT   79 (248)
T ss_dssp             CBSCEECCTTSSTTEEEEEET-TEEEEEEEEETTEEEECGGGGTTCCCGGGEEEEESCCBTTCCCSSCEEECEEEEEECT
T ss_pred             CCCCccCCCCCCCeEEEEEcC-CceEEEEEEcCCEEEECHHHcCCCCCcCcEEEEEEeEEcCCCCCccEEEeeeEEEeCC
Confidence            689999999999999999875 5889999999999999999997653 36789999988876655567889999999999


Q ss_pred             CCCC-CCCCCceEEEEecCc----cccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCC-CCccceeEeeeecc--c
Q psy10841        125 MFKR-AEMTNDLALLQLAAP----LRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGP-DPDHMREVQVPILP--A  196 (286)
Q Consensus       125 ~y~~-~~~~~DiAllkL~~~----i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~-~~~~l~~~~~~~~~--~  196 (286)
                      +|+. ....+|||||||+++    +.|+++++|||||........+..++++|||.+..... .+..|++..+.+++  +
T Consensus        80 ~y~~~~~~~~DiALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~  159 (248)
T 2r0l_A           80 LYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHK  159 (248)
T ss_dssp             TCCTTSTTTTCCEEEEECCSSSCSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSSSCCSCCSBCEEEEEEBCCHHH
T ss_pred             ccCcCCCCCCCEEEEEeCCcccccccCCCcEEEEECCCCCCCCCCCCEEEEEEccccCCCCCCCCchheEEEEeeeCHHH
Confidence            9998 678899999999999    88999999999998655566788999999998865443 46789999999988  5


Q ss_pred             cccc--c--cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHh
Q psy10841        197 CKHY--E--DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS  272 (286)
Q Consensus       197 c~~~--~--~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~  272 (286)
                      |+..  +  ...+.+||++......+.|.|||||||++..   +++|+|+||+||+..|...+.|++||||++|++||++
T Consensus       160 C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~---~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~  236 (248)
T 2r0l_A          160 CSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEK---NGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWIND  236 (248)
T ss_dssp             HTSTTTTGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEE---TTEEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHHHH
T ss_pred             hCCccccCCcCCCCEEeECCCCCCCcCCCCccCCeEEEEE---CCcEEEEEEEEeCCCCCCCCCCcEEEEHHHHHHHHHH
Confidence            8753  1  2567899998655567899999999999976   6899999999999999877889999999999999999


Q ss_pred             hhcccccc
Q psy10841        273 NSERAKVE  280 (286)
Q Consensus       273 ~~~~~~~~  280 (286)
                      +++.....
T Consensus       237 ~~~~~~~~  244 (248)
T 2r0l_A          237 RIRPPRRL  244 (248)
T ss_dssp             HHC-----
T ss_pred             HhcCCCCC
Confidence            99876543

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=100.00  E-value=5e-52  Score=370.75  Aligned_cols=246  Identities=37%  Similarity=0.768  Sum_probs=205.2

Q ss_pred             ccCCCCCCccCCCceecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCC--CCCceEEEEEeeeecccCC
Q psy10841         32 ATDMAGNPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDG--FEKHYFEVYAGMLRRFSFS  109 (286)
Q Consensus        32 ~~~~~~~~~~~~~~i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~--~~~~~~~v~~g~~~~~~~~  109 (286)
                      .+..||.......||+||+++..++|||+|+|+.++.++|+||||+++||||||||+..  .....+.|++|..+...  
T Consensus       104 ~c~~Cg~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~~V~~G~~~~~~--  181 (372)
T 1z8g_A          104 ICQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQAS--  181 (372)
T ss_dssp             EECCCSCCCCC---CBSCEECCTTSSTTEEEEEETTEEEEEEEESSSSEEEECGGGCCGGGCCGGGEEEEESCSBTTC--
T ss_pred             eccccCCcCCCCCceECCEECCCCCCCcEEEEEeCCceEEEEEEecCCEEEEChhhcCCCCCccceEEEEEeeEeccC--
Confidence            44567766545679999999999999999999988889999999999999999999943  23357889999876543  


Q ss_pred             CCceEEeeeEEEECCCC------CCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCC
Q psy10841        110 PTEQVRPVSRIVMHSMF------KRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDP  183 (286)
Q Consensus       110 ~~~~~~~v~~~~~hp~y------~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~  183 (286)
                      ...+.+.|+++++||+|      +.....||||||||++|+.|+++++|||||........+..++++|||.+...+..+
T Consensus       182 ~~~~~~~V~~i~~Hp~y~~~~~~~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~~~~~  261 (372)
T 1z8g_A          182 PHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQA  261 (372)
T ss_dssp             TTSEEECEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBC
T ss_pred             CCCcEEEEEEEEECCCccccccCCCCCCCccEEEEEECCCCCCCCceeccccCCcccCCCCCCEEEEEecCCCCCCCCCC
Confidence            23457899999999999      667788999999999999999999999999865555678899999999987666667


Q ss_pred             ccceeEeeeecc--ccccc--c--cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecC-CCCCcEEEEEEEEecCCCCCCCC
Q psy10841        184 DHMREVQVPILP--ACKHY--E--DRIADVICAGMPQGGRDTCQGDSGGPLLCPVP-GSQGRWYVAGVVSHGEGCARPNE  256 (286)
Q Consensus       184 ~~l~~~~~~~~~--~c~~~--~--~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~-~~~~~~~lvGI~s~~~~c~~~~~  256 (286)
                      ..|+++.+++++  .|+..  +  ...+.+||++......+.|.|||||||++... ...++|+|+||+|||.+|...+.
T Consensus       262 ~~L~~~~v~ii~~~~C~~~~~~~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~~~~~lvGIvS~G~~C~~~~~  341 (372)
T 1z8g_A          262 GVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQK  341 (372)
T ss_dssp             SBCEEEEEEEECHHHHTSTTTTTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTC
T ss_pred             ceeeEEEEEecChHHhCcchhcCCcCCCCeEeeecCCCCCcCCCCCCccceEeccCcCCCCCEEEEEEEEeCCCCCCCCC
Confidence            889999999988  58753  2  25678999987666678999999999999763 23588999999999999987788


Q ss_pred             CeeEEeCCCcHHHHHhhhccccc
Q psy10841        257 PGVYTRVSQFVPWLMSNSERAKV  279 (286)
Q Consensus       257 p~v~t~v~~~~~WI~~~~~~~~~  279 (286)
                      |++||||++|++||+++++..+.
T Consensus       342 p~vyt~V~~y~~WI~~~i~~~~~  364 (372)
T 1z8g_A          342 PGVYTKVSDFREWIFQAIKTHSE  364 (372)
T ss_dssp             CEEEEEGGGGHHHHHHHHHHTTT
T ss_pred             CeEEEEHHHHHHHHHHHHhccCC
Confidence            99999999999999999976553

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=7.2e-52  Score=351.24  Aligned_cols=227  Identities=31%  Similarity=0.629  Sum_probs=193.4

Q ss_pred             CCceecCeeCCCCccceEEEEeeC----CeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccC-CCCceEEee
Q psy10841         43 SGRVVGGKKAELGAWPWLIALYRD----GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSF-SPTEQVRPV  117 (286)
Q Consensus        43 ~~~i~~g~~a~~~~~Pw~v~i~~~----~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~-~~~~~~~~v  117 (286)
                      +.||+||++|..++|||+|+|+..    ..++|+||||+++||||||||+.+  ...+.|++|..+.... ....+.+.|
T Consensus        11 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~--~~~~~V~~G~~~~~~~~~~~~~~~~v   88 (251)
T 1pyt_D           11 SARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISN--TLTYRVALGKNNLEVEDEAGSLYVGV   88 (251)
T ss_dssp             SSSCCSSCCCCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCT--TCCEEEEESCSBTTCSCCSSCEEEEE
T ss_pred             CCccCCCEECCCCCCCceEEEEEEcCCCcceEEEeEEecCCEEEECHHHhCC--CceEEEEEcccccccCCCCCcEEEEE
Confidence            469999999999999999999641    257899999999999999999964  4567899998776432 234567889


Q ss_pred             eEEEECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--
Q psy10841        118 SRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--  195 (286)
Q Consensus       118 ~~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--  195 (286)
                      +++++||+|+.....+|||||||++|+.|++.++|||||........+..++++|||.+...+.....|++..+++++  
T Consensus        89 ~~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~  168 (251)
T 1pyt_D           89 DTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYA  168 (251)
T ss_dssp             EEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEECBCCCSSCCSCCCSBCBCCEEECBCHH
T ss_pred             EEEEECCCCCCCCCCCCEEEEEECCCcccCCCeeeeEcCCCcccCCCCCEEEEEecccCCCCCCcccchheeEeEeeCHH
Confidence            999999999998889999999999999999999999999866555667899999999887666666789999998888  


Q ss_pred             cccccc----cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC--CCCCCCCCeeEEeCCCcHHH
Q psy10841        196 ACKHYE----DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPW  269 (286)
Q Consensus       196 ~c~~~~----~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~--~c~~~~~p~v~t~v~~~~~W  269 (286)
                      .|+..+    ...+.+||++. ....+.|.|||||||++..   +++|+|+||+|||.  .|...+.|++||||++|++|
T Consensus       169 ~C~~~~~~~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~---~~~~~l~GI~S~g~~~~C~~~~~p~vyt~V~~~~~W  244 (251)
T 1pyt_D          169 TCSQRDWWGTTVKETMVCAGG-DGVISACNGDSGGPLNCQA---DGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDW  244 (251)
T ss_dssp             HHTSTTTTTTTCCTTEEEECC-SCSSCCCCSCTTCEEEEES---SSSEEEEEEEEECCSSCTTBTTBCEEEEEGGGGHHH
T ss_pred             HcchhhccCCCcCCCeEEecC-CCCCccCCCCCCCceEEEE---CCCEEEEEEEEECCCCCCCCCCCCeEEEEHHHHHHH
Confidence            586543    25678999985 4556899999999999976   67899999999996  78876789999999999999


Q ss_pred             HHhhhc
Q psy10841        270 LMSNSE  275 (286)
Q Consensus       270 I~~~~~  275 (286)
                      |+++++
T Consensus       245 I~~~~~  250 (251)
T 1pyt_D          245 INQKLQ  250 (251)
T ss_dssp             HHHHTT
T ss_pred             HHHHhc
Confidence            999875

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=100.00  E-value=9.2e-53  Score=353.33  Aligned_cols=226  Identities=38%  Similarity=0.729  Sum_probs=194.2

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|.|.....++|+||||+++||||||||+...  ..+.|++|..+........+.+.|.++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAhC~~~~--~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~   78 (235)
T 2wph_S            1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETG--VKITVVAGEHNIEETEHTEQKRNVIRIIPHHN   78 (235)
T ss_dssp             CBSCEECCTTSSTTEEEEESSSTTCEEEEEEETTEEEECGGGCCTT--SCCEEEESCCBTTSCCSCCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCCCeEEEEccCCCeeEEEEEEeCCEEEECHHHCcCC--CCEEEEEcccccCCCCCCcEEeeeEEEEeCCC
Confidence            6899999999999999998777789999999999999999999653  35789999887765555678899999999999


Q ss_pred             CCC--CCCCCceEEEEecCccccCCceeeeecCCCCCC--CCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccc
Q psy10841        126 FKR--AEMTNDLALLQLAAPLRYNRYVRPICLPDVTET--PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       126 y~~--~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~--~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~  199 (286)
                      |+.  ....+|||||||++|+.|+++++|||||.....  ...+..++++|||.+...+.....|++..+++++  +|+.
T Consensus        79 y~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~  158 (235)
T 2wph_S           79 FNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLR  158 (235)
T ss_dssp             TTSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHHHTCEEEEEESSBSSTTSCBCSBCEEEEEEEECHHHHHH
T ss_pred             CcccCCcCCCCEEEEEECCcCcCCCCccccCCCCCcccccccCCccEEEEeCCCccCCCCccchheEeeeeeeCHHHhcC
Confidence            998  667899999999999999999999999864321  1245789999999887666667889999999988  5876


Q ss_pred             ccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        200 YED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       200 ~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      .+.  ..+.+||++......+.|.|||||||++..   +++|+|+||+||+..|...+.|++||||+.|++||+++++.
T Consensus       159 ~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~---~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~  234 (235)
T 2wph_S          159 STKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEV---EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKL  234 (235)
T ss_dssp             TCSSCCCTTEEEESCTTCSCBCCTTCTTCEEEEEE---TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHCCC
T ss_pred             cccCCCCCCEEEeCCCCCCCccCCCCCCCceEEeE---CCeEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHhc
Confidence            543  567899998655567899999999999976   67899999999999998778899999999999999999875

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=100.00  E-value=4.2e-52  Score=351.47  Aligned_cols=223  Identities=41%  Similarity=0.815  Sum_probs=189.7

Q ss_pred             eecCeeCCCCccceEEEEee-CC--eEEeEEEEeeCCEEEeccCCcCCC--CCceEEEEEeeeecccCCCCceEEeeeEE
Q psy10841         46 VVGGKKAELGAWPWLIALYR-DG--FFHCGGVVLDESWVMTAAHCVDGF--EKHYFEVYAGMLRRFSFSPTEQVRPVSRI  120 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~-~~--~~~C~GtLIs~~~VLTaAhC~~~~--~~~~~~v~~g~~~~~~~~~~~~~~~v~~~  120 (286)
                      |+||++|..++|||+|+|+. .+  .++|+||||+++||||||||+...  ....+.|.+|..+...   ..+.+.|+++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~---~~~~~~v~~i   77 (245)
T 2f9n_A            1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQLREQHLYY---QDQLLPVSRI   77 (245)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESSSEEEEEEEEEEETTEEEECGGGGCSSCCCGGGEEEECSCSBTTT---TCCCBCEEEE
T ss_pred             CCCCeECCCCCCCcEEEEEEcCCCcceEEEEEEeeCCEEEECHHhCCCCCCCcceEEEEeCCccccc---CceEEEEEEE
Confidence            68999999999999999976 33  578999999999999999999643  3357888888766542   4567889999


Q ss_pred             EECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCC--CccceeEeeeecc--c
Q psy10841        121 VMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPD--PDHMREVQVPILP--A  196 (286)
Q Consensus       121 ~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~--~~~l~~~~~~~~~--~  196 (286)
                      ++||+|+.....+|||||||++|+.|++.++|||||........+..++++|||.+...+..  ...|+++.+++++  .
T Consensus        78 ~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~L~~~~~~~~~~~~  157 (245)
T 2f9n_A           78 IVHPQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHI  157 (245)
T ss_dssp             EECTTCCSSCCTTCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCCEEEEESCCSBTTBCCCTTCBCEEEECCEECHHH
T ss_pred             EECCCccCCCCCCcEEEEEeCCCCcCCCCccccCCCCcccCCCCCCEEEEEEeCCCCCCCCCCccccceEEEEEEcCHHH
Confidence            99999999888999999999999999999999999986555667889999999987654433  3479999999888  5


Q ss_pred             cccccc-----------CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCC
Q psy10841        197 CKHYED-----------RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQ  265 (286)
Q Consensus       197 c~~~~~-----------~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~  265 (286)
                      |+..+.           ..+.+||++  ....+.|.|||||||++..   +++|+|+||+|||.+|+..+.|++||||+.
T Consensus       158 C~~~~~~~~~~~~~~~~~~~~~~Ca~--~~~~~~C~GDSGgPL~~~~---~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~  232 (245)
T 2f9n_A          158 CDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCQGDSGGPLVCKV---NGTWLQAGVVSWGEGCAQPNRPGIYTRVTY  232 (245)
T ss_dssp             HHHHHHTTCCSCTTSCCSCTTEEEEC--CSSSBCCTTCTTCEEEEEE---TTEEEEEEEEEECSSSSBTTBCEEEEEGGG
T ss_pred             hhhhhcccccccccccccccccEeec--CCCCCcCCCCCCCceEEEE---CCEEEEEEEEEeCCCCCCCCCCeEEEEHHH
Confidence            876442           457899997  3467899999999999976   689999999999999987778999999999


Q ss_pred             cHHHHHhhhcc
Q psy10841        266 FVPWLMSNSER  276 (286)
Q Consensus       266 ~~~WI~~~~~~  276 (286)
                      |++||++++++
T Consensus       233 y~~WI~~~~~~  243 (245)
T 2f9n_A          233 YLDWIHHYVPK  243 (245)
T ss_dssp             GHHHHHHHSCC
T ss_pred             HHHHHHHHhhc
Confidence            99999999875

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=100.00  E-value=1.1e-51  Score=354.72  Aligned_cols=244  Identities=33%  Similarity=0.679  Sum_probs=200.6

Q ss_pred             ccCCCCCCccC-CCceecCeeCCCCccceEEEEeeCC-----eEEeEEEEeeCCEEEeccCCcCCCCC-ceEEEEEeeee
Q psy10841         32 ATDMAGNPILG-SGRVVGGKKAELGAWPWLIALYRDG-----FFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGMLR  104 (286)
Q Consensus        32 ~~~~~~~~~~~-~~~i~~g~~a~~~~~Pw~v~i~~~~-----~~~C~GtLIs~~~VLTaAhC~~~~~~-~~~~v~~g~~~  104 (286)
                      ....||..... ..||+||++|..++|||+|+|+...     .++|+||||+++||||||||+.+... ..+.|.+|..+
T Consensus         9 ~~~~CG~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~v~~g~~~   88 (276)
T 2vnt_A            9 LKFQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSR   88 (276)
T ss_dssp             -CCCTTCCCC-----CCSSEECCGGGSTTEEEEEEECSSSCEEEEEEEEEEETTEEEECGGGTTTCCCGGGEEEEESCCB
T ss_pred             CCCCCCCcCCCCCCcEECCEECCCCCCCcEEEEEEecCCCcceeEEEEEEeeCCEEEECcccccCCCCCccEEEEeeeee
Confidence            34457765543 4699999999999999999997532     47899999999999999999976543 57788899888


Q ss_pred             cccCCCCceEEeeeEEEECCCCCCCC--CCCceEEEEecCcc----ccCCceeeeecCCCCCCCCCCCceEEEEecccCC
Q psy10841        105 RFSFSPTEQVRPVSRIVMHSMFKRAE--MTNDLALLQLAAPL----RYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFE  178 (286)
Q Consensus       105 ~~~~~~~~~~~~v~~~~~hp~y~~~~--~~~DiAllkL~~~i----~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~  178 (286)
                      ........+.+.|+++++||+|+...  .++|||||+|+.++    .|+..++|||||........+..+.++|||.+..
T Consensus        89 ~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~Diall~L~~~~~~~~~~~~~v~picL~~~~~~~~~~~~~~~~g~G~~~~  168 (276)
T 2vnt_A           89 LNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENS  168 (276)
T ss_dssp             SSSCCTTCEEEEEEEEEECTTCEECSSCEESCCEEEEEECTTSCCCCCCSSCCCCBCCCSSCCCCTTCEEEEEESCCSST
T ss_pred             ccCCCCceEEEEEEEEEEccccccccccccchhhhhhhhccccccccCcccccccccccccccccccceEEEEEeecccc
Confidence            77767778899999999999998664  46899999998765    5889999999998777777789999999998765


Q ss_pred             CC-CCCccceeEeeeecc--ccccccc----CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCC
Q psy10841        179 HG-PDPDHMREVQVPILP--ACKHYED----RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGC  251 (286)
Q Consensus       179 ~~-~~~~~l~~~~~~~~~--~c~~~~~----~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c  251 (286)
                      .+ .....++.+.+.+++  +|...+.    ....++|+.......+.|.|||||||++..   +++|+|+||+|||.+|
T Consensus       169 ~~~~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~C~GDSGGPLv~~~---~~~~~lvGIvS~G~~C  245 (276)
T 2vnt_A          169 TDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL---QGRMTLTGIVSWGRGC  245 (276)
T ss_dssp             TCSCCCSBCEEEEEEEECHHHHTSTTTTGGGSCTTEEEEECTTSCCCCCTTCTTCEEEEEE---TTEEEEEEEEEECSSS
T ss_pred             CCCCcchhheeeeeeEecHHHhhhhhccCcccCccceeeccCCCCCCCCCCCCCCeEEEee---CCeEEEEEEEEECCCC
Confidence            44 345678888888887  5876432    456688887767778999999999999977   6899999999999999


Q ss_pred             CCCCCCeeEEeCCCcHHHHHhhhcccc
Q psy10841        252 ARPNEPGVYTRVSQFVPWLMSNSERAK  278 (286)
Q Consensus       252 ~~~~~p~v~t~v~~~~~WI~~~~~~~~  278 (286)
                      +..+.|+|||||++|++||+++|+++.
T Consensus       246 ~~~~~P~vyt~V~~y~~WI~~~~~~~n  272 (276)
T 2vnt_A          246 ALKDKPGVYTRVSHFLPWIRSHTKEEN  272 (276)
T ss_dssp             SBTTBCEEEEEGGGGHHHHHHHHSCC-
T ss_pred             CCCCCCEEEEEHHHHHHHHHHHhhhhc
Confidence            988899999999999999999998764

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=100.00  E-value=1.1e-51  Score=345.34  Aligned_cols=221  Identities=33%  Similarity=0.664  Sum_probs=192.0

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|+|+.++.++|+||||+++||||||||+.+.....+.|++|..+........+.+.|.++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~   80 (228)
T 2xw9_A            1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPD   80 (228)
T ss_dssp             CBCC-CCCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGGSSCTTCCEEEEESCSBSSSCCTTCEEEEEEEEEECTT
T ss_pred             CCCCeECCCCCCCcEEEEEECCCeEEEEEEEeCCEEEEcHHhCCCCCCCceEEEEcccccCCCCCcceEEEEEEEEeCCC
Confidence            68999999999999999998888999999999999999999997665568899999887765555568899999999999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccccc-
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYED-  202 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~~-  202 (286)
                      |+.....+|||||||++|+.|++.++|||||........+..++++|||.+...+.....|++..+++++  +|+..+. 
T Consensus        81 y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~  160 (228)
T 2xw9_A           81 SQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHH  160 (228)
T ss_dssp             CCTTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCCCCCTTC-CEEEESSCCSTTCCCCSBCEEEECCEECHHHHTSTTTT
T ss_pred             CCCCCCCCcEEEEEeCCCcccCCCeeecccCCcccCCCCCCEEEEEEecccCCCCCCCchheEEEEEEcChhHhcCcccc
Confidence            9998899999999999999999999999999865556678899999999887666667889999999988  5876543 


Q ss_pred             ---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        203 ---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       203 ---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                         ..+.+||++.  ...+.|.|||||||++..       +|+||+|++. .|...+.|++||||++|++||+++++
T Consensus       161 ~~~~~~~~~Ca~~--~~~~~C~GDsGgPL~~~~-------~l~Gi~s~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~  228 (228)
T 2xw9_A          161 DGAITERLMCAES--NRRDSCKGDAGGPLVCGG-------VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  228 (228)
T ss_dssp             TTCCCTTEEEECC--SSCBCCTTCTTCEEEETT-------EEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHHC
T ss_pred             CCcccCCEEecCC--CCCccCCCCCcccEEECC-------EEEEEEeecCCcCCCCCCCcEEEEHHHHHHHHHHHhC
Confidence               5678999974  567899999999999832       6999999998 89877789999999999999999874

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=100.00  E-value=6.8e-52  Score=345.13  Aligned_cols=218  Identities=36%  Similarity=0.677  Sum_probs=189.3

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCC-CceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFE-KHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~-~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |+||+++..++|||+|+|+..+.++|+||||+++||||||||+.+.. ...+.|++|..+..   ...+.+.|+++++||
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~---~~~~~~~v~~~~~hp   77 (222)
T 1eq9_A            1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNYLS---ESGDVYDVEDAVVNK   77 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEECSSSEEEECHHHHTTCSCGGGEEEEESCSBTT---SCCEEEEEEEEEECT
T ss_pred             CCCCEECCCCCcceEEEEEeCCCeEEEEEEeeCCEEEEhhhcCCCCCCCceEEEEECceecC---CCCeEEEEEEEEECC
Confidence            68999999999999999998888999999999999999999997654 46788999977653   356789999999999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccc-ccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK-HYE  201 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~-~~~  201 (286)
                      +|+.....+|||||||++|+.|++.++|||||..... ..+..++++|||.+...+..+..|+++.+.+++  .|+ ..+
T Consensus        78 ~y~~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~~-~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~  156 (222)
T 1eq9_A           78 NYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDED-LESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW  156 (222)
T ss_dssp             TCBTTTTBCCCEEEEESSCCCCBTTBCCCEECSCCTT-CTTSEEEEEECCCSSTTCCCCSBCEEEEEEEECHHHHHHHSS
T ss_pred             CCCCCCCCCCEEEEEECCccccCCceEccCCCCCCcC-CCCCEEEEEcccccCCCCcccchheEeEEEEeCHHHhCcccC
Confidence            9999888999999999999999999999999975443 567889999999887666667889999999988  587 444


Q ss_pred             cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        202 DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       202 ~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      ...+.++|++. ....+.|.|||||||++..       +|+||+|||..|.. +.|++||||++|++||++++++
T Consensus       157 ~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~-------~l~GI~S~g~~C~~-~~p~vyt~V~~~~~WI~~~~~~  222 (222)
T 1eq9_A          157 RVIDSHICTLT-KRGEGACHGDSGGPLVANG-------AQIGIVSFGSPCAL-GEPDVYTRVSSFVSWINANLKK  222 (222)
T ss_dssp             SCCTTEEEECC-CTTCBCCTTCTTCEEEETT-------EEEEEEEECSTTTS-SSCEEEEEGGGGHHHHHHTSCC
T ss_pred             CCCccEEeecC-CCCCeeeeCCccceEEECC-------EEEEEEEECCCcCC-CCCCEEEEHHHHHHHHHHHhhC
Confidence            56788999976 4567899999999999732       69999999999986 6799999999999999999864

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=100.00  E-value=1.1e-51  Score=349.11  Aligned_cols=228  Identities=34%  Similarity=0.718  Sum_probs=196.0

Q ss_pred             eecCeeCCCCccceEEEEeeCC-----eEEeEEEEeeCCEEEeccCCcCCCC-CceEEEEEeeeecccCCCCceEEeeeE
Q psy10841         46 VVGGKKAELGAWPWLIALYRDG-----FFHCGGVVLDESWVMTAAHCVDGFE-KHYFEVYAGMLRRFSFSPTEQVRPVSR  119 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~-----~~~C~GtLIs~~~VLTaAhC~~~~~-~~~~~v~~g~~~~~~~~~~~~~~~v~~  119 (286)
                      |+||+++..++|||+|+|+...     .++|+||||+++||||||||+.+.. ...+.|++|..+........+.+.|++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~   80 (247)
T 3mhw_U            1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN   80 (247)
T ss_dssp             CBSSEECCGGGSTTEEEEEEECTTSCEEEEEEEEEEETTEEEECGGGTTTSCCGGGEEEEESCCBSSSCCTTCEEEEEEE
T ss_pred             CCCCEECCCCCCCCEEEEEEecCCCccceEEEEEEEeCCEEEEcHHhCcCCCCCccEEEEeccccccCCCCCCEEEEEEE
Confidence            6899999999999999997432     5789999999999999999997653 357889999888776666778899999


Q ss_pred             EEECCCCCCCC--CCCceEEEEecCc----cccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCC-CCccceeEeee
Q psy10841        120 IVMHSMFKRAE--MTNDLALLQLAAP----LRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGP-DPDHMREVQVP  192 (286)
Q Consensus       120 ~~~hp~y~~~~--~~~DiAllkL~~~----i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~-~~~~l~~~~~~  192 (286)
                      +++||+|+...  ..+|||||||++|    +.|++.++|||||........+..++++|||.+..... .+..++...+.
T Consensus        81 i~~hp~y~~~~~~~~~DIALl~L~~~~~~~~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~  160 (247)
T 3mhw_U           81 LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVK  160 (247)
T ss_dssp             EEECTTCEEC-CCEESCCEEEEEECTTSCCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEE
T ss_pred             EEECCCCCCCcCCCCCcEEEEEeCCccccccccCCcccccccCCCcCCCCCCCEEEEEecCCcCCCCcccchhheeeEEE
Confidence            99999998776  5699999999999    78899999999998666667789999999998765443 46789999999


Q ss_pred             ecc--cccccc----cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCc
Q psy10841        193 ILP--ACKHYE----DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQF  266 (286)
Q Consensus       193 ~~~--~c~~~~----~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~  266 (286)
                      +++  +|+..+    ...+.+||++......+.|.|||||||++..   +++|+|+||+||+.+|...+.|++||||++|
T Consensus       161 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~---~~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~  237 (247)
T 3mhw_U          161 LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL---QGRMTLTGIVSWGRGCALKDKPGVYTRVSHF  237 (247)
T ss_dssp             EECHHHHTSTTTTGGGCCTTEEEEECTTSCCBCCTTCTTCEEEEEE---TTEEEEEEEEEECSSSSBTTBCEEEEEGGGC
T ss_pred             EEChHHhcCccccCCcCCCCeEecCCCCCCCccCCCCCCCeEEEEE---CCCEEEEEEEEECCCCCCCCCCeEEEEHHHH
Confidence            888  587532    3568899998766678999999999999977   6899999999999999977889999999999


Q ss_pred             HHHHHhhhcc
Q psy10841        267 VPWLMSNSER  276 (286)
Q Consensus       267 ~~WI~~~~~~  276 (286)
                      ++||++++++
T Consensus       238 ~~WI~~~~~e  247 (247)
T 3mhw_U          238 LPWIRSHTKE  247 (247)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhcC
Confidence            9999999874

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=100.00  E-value=1.6e-51  Score=343.09  Aligned_cols=217  Identities=32%  Similarity=0.669  Sum_probs=188.5

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|+|+.++.++|+||||+++||||||||+.    ..+.|++|..+........+.+.|.++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~   76 (223)
T 1lo6_A            1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKK----PNLQVFLGKHNLRQRESSQEQSSVVRAVIHPD   76 (223)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCC----TTCEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCCCCEEEEecCCCEEEEeEEecCCEEEECccCCC----CCeEEEEcceecCCCCCCcEEEEEEEEEECCC
Confidence            68999999999999999998888999999999999999999985    34678999887765555678899999999999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccccc-
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYED-  202 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~~-  202 (286)
                      |+.....+|||||||++|+.|++.++|||||...  ...+..++++|||.+. .+..+..|++..+.+++  +|+..+. 
T Consensus        77 y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~--~~~~~~~~v~GwG~~~-~~~~~~~l~~~~~~~~~~~~C~~~~~~  153 (223)
T 1lo6_A           77 YDAASHDQDIMLLRLARPAKLSELIQPLPLERDC--SANTTSCHILGWGKTA-DGDFPDTIQCAYIHLVSREECEHAYPG  153 (223)
T ss_dssp             CCTTTCTTCCEEEEESSCCCCBTTBCCCCBCCCT--TCCCCEEEEEESSCCT-TSSCCSBCEEEEEEEECHHHHHHHSTT
T ss_pred             CCCCCCcCeEEEEEECCcccCCCceeecccCCCC--CCCCCEEEEEEECCCC-CCCcCceeeEEEEEEeCHHHhhhhhCC
Confidence            9998889999999999999999999999998743  3567899999999885 55667889999999988  5876553 


Q ss_pred             -CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEec-CCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        203 -RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       203 -~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~-~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                       ..+.+||++......+.|.|||||||++..       +|+||+||| ..|...+.|++||||++|++||++++++
T Consensus       154 ~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~-------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~  222 (223)
T 1lo6_A          154 QITQNMLCAGDEKYGKDSCQGDSGGPLVCGD-------HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQA  222 (223)
T ss_dssp             TCCTTEEEEECTTTCCBCCTTTTTCEEEETT-------EEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC-
T ss_pred             CCCCCeEEeecCCCCCeeccccCCCcEEeCC-------EEEEEEeeCCCCCCCCCCCcEEEEHHHHHHHHHHHhcc
Confidence             567899998755568899999999999832       599999999 5898777899999999999999999864

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=8.7e-52  Score=345.87  Aligned_cols=221  Identities=34%  Similarity=0.711  Sum_probs=190.4

Q ss_pred             eecCeeCCCCccceEEEEeeC-CeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRD-GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |+||+++..++|||+|.|+.. +.++|+||||+++||||||||+..  ...+.|++|..+........+.+.|+++++||
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~--~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp   78 (228)
T 1fxy_A            1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ--AKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHN   78 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTSCEEEEEEECSSSEEEECGGGTTS--CSSCEEEEECSCTTTCCCCEEEEEEEEEEECT
T ss_pred             CCCCEECCCCCcCcEEEEEcCCCCeeEEEEEeeCCEEEECHHHCCC--CCcEEEEECccCccccCCCcEEEEEEEEEECC
Confidence            689999999999999999865 568999999999999999999953  35678999988766555567889999999999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCC-CCccceeEeeeecc--cccccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGP-DPDHMREVQVPILP--ACKHYE  201 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~-~~~~l~~~~~~~~~--~c~~~~  201 (286)
                      +|+.....+|||||||++|+.|+++++|||||...  ...+..++++|||.+...+. .+..|++..+++++  .|+..+
T Consensus        79 ~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~--~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~  156 (228)
T 1fxy_A           79 RFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAP--PATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASY  156 (228)
T ss_dssp             TCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCSSC--CCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHS
T ss_pred             CCCCCCCcCcEEEEEECCcccCCCceeccCCCCCC--CCCCCEEEEEecCccCCCCCCCCccceEEEEEEeCHHHhHhhc
Confidence            99998889999999999999999999999999743  45678999999998865554 57789999999988  587655


Q ss_pred             c--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        202 D--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       202 ~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                      .  ..+.+||++......+.|.|||||||++..       +|+||+||+..|...+.|++||||++|++||+++++..
T Consensus       157 ~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-------~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~~  227 (228)
T 1fxy_A          157 PGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNG-------QLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAAN  227 (228)
T ss_dssp             TTTCCTTEEEESCTTCSCBCCTTCTTCEEEETT-------EEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHHHT
T ss_pred             CCCCCCCEEEeccCCCCCccccCccccceEECC-------EEEEEEEECCCCCCCCCCEEEEEhHHHHHHHHHHHhcc
Confidence            3  567899998655667899999999999843       59999999999987778999999999999999998754

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=100.00  E-value=9.1e-52  Score=344.37  Aligned_cols=217  Identities=36%  Similarity=0.737  Sum_probs=188.3

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|+|+. +.++|+||||+++||||||||+.    ..+.|++|..+........+.+.|+++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~-~~~~CgGsLIs~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~   75 (222)
T 1hj8_A            1 IVGGYECKAYSQPHQVSLNS-GYHFCGGSLVNENWVVSAAHCYK----SRVEVRLGEHNIKVTEGSEQFISSSRVIRHPN   75 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEES-SSEEEEEEEEETTEEEECGGGCC----SSCEEEESCSBTTSCCSCCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCCCEEEEEEc-CCcEEEeEEecCCEEEECHHhcC----CCeEEEEcccccccCCCCcEEEEEEEEEECCC
Confidence            68999999999999999974 56899999999999999999995    34578999887765455678899999999999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccccc-
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYED-  202 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~~-  202 (286)
                      |+.....+|||||||++|+.|++.++|||||...  ...+..++++|||.+...+..+..|+++.+++++  +|+..+. 
T Consensus        76 y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~--~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~  153 (222)
T 1hj8_A           76 YSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSC--APAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPG  153 (222)
T ss_dssp             CBTTTTBSCCEEEEESSCCCCSSSCCCCBCCSSC--CCTTCEEEEEESSCCCCSSCCTTBCEEEEEEBCCHHHHHHHSTT
T ss_pred             CCCCCCCCcEEEEEECCcccCCCceeccCCCCCC--CCCCCEEEEEECCCCCCCCCCCceeEEEEEEEcCHHHhhhhccC
Confidence            9998889999999999999999999999999743  4567899999999886666667889999999988  5876553 


Q ss_pred             -CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        203 -RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       203 -~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                       ..+.+||++......+.|.|||||||++..       +|+||+||+..|...+.|++||||++|++||++++++
T Consensus       154 ~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-------~l~Gi~S~g~~C~~~~~p~vyt~v~~~~~WI~~~~~~  221 (222)
T 1hj8_A          154 MITNAMFCAGYLEGGKDSCQGDSGGPVVCNG-------ELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMAS  221 (222)
T ss_dssp             CCCTTEEEESCTTSSCBCCTTCTTCEEEETT-------EEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHHC
T ss_pred             CCCCCeEEeccCCCCCccCCCCcccceEECC-------EEEEEEeecCCCCCCCcCcEEEEhHHhHHHHHHHhhc
Confidence             567899998655667899999999999832       5999999999998778899999999999999998864

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=100.00  E-value=1.6e-51  Score=355.98  Aligned_cols=233  Identities=33%  Similarity=0.729  Sum_probs=193.9

Q ss_pred             eecCeeCCCCccceEEEEee----CC--eEEeEEEEeeCCEEEeccCCcCCCC-CceEEEEEeeeecccCC-----CCce
Q psy10841         46 VVGGKKAELGAWPWLIALYR----DG--FFHCGGVVLDESWVMTAAHCVDGFE-KHYFEVYAGMLRRFSFS-----PTEQ  113 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~----~~--~~~C~GtLIs~~~VLTaAhC~~~~~-~~~~~v~~g~~~~~~~~-----~~~~  113 (286)
                      |+||++|..++|||+|+|+.    ++  .++|+||||+++||||||||+.... ...+.|++|..+.....     ...+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~   80 (290)
T 1fiw_A            1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRLIFGAKEVEWGTNKPVKPPLQ   80 (290)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEETTTTEEEEEEEEEEEETTEEEECGGGGSSCCSGGGEEEEESCSBCCTTCCSCCCTTCE
T ss_pred             CCCCEECCCCCCCcEEEEEEeccCCCccceEEEEEEeeCCEEEECHHhCCCCCCCcceEEEecceEEeccCCCcCCCCce
Confidence            68999999999999999964    22  5789999999999999999997543 35688999987654221     2357


Q ss_pred             EEeeeEEEECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCC-CCCCCceEEEEecccCCCCC-CCccceeEee
Q psy10841        114 VRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET-PEPYSTCTAVGWGAVFEHGP-DPDHMREVQV  191 (286)
Q Consensus       114 ~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~-~~~~~~~~~~Gwg~~~~~~~-~~~~l~~~~~  191 (286)
                      .+.|+++++||+|+.....||||||||++++.|+++++|||||..... ...+..++++|||.+...+. ....|+++.+
T Consensus        81 ~~~V~~i~~Hp~y~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v  160 (290)
T 1fiw_A           81 ERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARV  160 (290)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEEESCCCCBTTBCCCBCCCTTCCSCCSSCEEEEEESCCSSTTCSSCCSBCEEEEE
T ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEEECCccccCCccccccCCCccccCcCCCCeEEEEEeccCCCCCCCCCceeeEEEE
Confidence            889999999999999888999999999999999999999999975432 34578999999998865443 4567999999


Q ss_pred             eecc--cccccc----cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCC
Q psy10841        192 PILP--ACKHYE----DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQ  265 (286)
Q Consensus       192 ~~~~--~c~~~~----~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~  265 (286)
                      .+++  .|+...    ...+.+||++......+.|.|||||||++... .+++|+|+||+|||.+|+..+.|++||||++
T Consensus       161 ~i~~~~~C~~~~~~~~~i~~~~iCag~~~~~~~~C~GDSGGPLv~~~~-~~~~~~l~GIvS~g~~C~~~~~p~vyt~V~~  239 (290)
T 1fiw_A          161 DLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDS-AENSYVVVGITSWGVGCARAKRPGVYTSTWS  239 (290)
T ss_dssp             EEECHHHHTSTTTTTTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECS-SSSCEEEEEEEEECSSSSBTTBCEEEEESGG
T ss_pred             EEecHHHhccccccCCcCCCCEEEEecCCCCCeeCCCCCchheEEEEC-CCCCEEEEEEEEECCCCCCCCCCeEEEEHHH
Confidence            9988  587532    25678999986556679999999999998652 3578999999999999987788999999999


Q ss_pred             cHHHHHhhhccccc
Q psy10841        266 FVPWLMSNSERAKV  279 (286)
Q Consensus       266 ~~~WI~~~~~~~~~  279 (286)
                      |++||+++++...+
T Consensus       240 y~~WI~~~~~~~~~  253 (290)
T 1fiw_A          240 YLNWIASKIGSTAV  253 (290)
T ss_dssp             GHHHHHHHHCHHHH
T ss_pred             hHHHHHHHhCcccc
Confidence            99999999987654

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=100.00  E-value=8.2e-52  Score=357.86  Aligned_cols=234  Identities=32%  Similarity=0.711  Sum_probs=189.5

Q ss_pred             CCceecCeeCCCCccceEEEEeeC--CeEEeEEEEeeCCEEEeccCCcCC------CCCceEEEEEeeeecccCCC-Cce
Q psy10841         43 SGRVVGGKKAELGAWPWLIALYRD--GFFHCGGVVLDESWVMTAAHCVDG------FEKHYFEVYAGMLRRFSFSP-TEQ  113 (286)
Q Consensus        43 ~~~i~~g~~a~~~~~Pw~v~i~~~--~~~~C~GtLIs~~~VLTaAhC~~~------~~~~~~~v~~g~~~~~~~~~-~~~  113 (286)
                      ..||+||++|..++|||+|+|+..  +.++|+||||+++||||||||+..      .....+.|++|.++...... ..+
T Consensus        28 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~  107 (289)
T 2bdy_A           28 DGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEK  107 (289)
T ss_dssp             ---CBSCEECCTTSCTTEEEEEETTTTEEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCE
T ss_pred             CCeEECCEECCCCCCCCeEEEEECCCCCEEEEEEEecCCEEEEcHHhcccCccccccCcccEEEEEccccccccCCCcce
Confidence            359999999999999999999754  468999999999999999999953      23357889999877654332 346


Q ss_pred             EEeeeEEEECCCCCC-CCCCCceEEEEecCccccCCceeeeecCCCCCC---CCCCCceEEEEecccCCCC-----C-CC
Q psy10841        114 VRPVSRIVMHSMFKR-AEMTNDLALLQLAAPLRYNRYVRPICLPDVTET---PEPYSTCTAVGWGAVFEHG-----P-DP  183 (286)
Q Consensus       114 ~~~v~~~~~hp~y~~-~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~---~~~~~~~~~~Gwg~~~~~~-----~-~~  183 (286)
                      .+.|+++++||+|+. ..+.+|||||||++|+.|+++++|||||.....   ...+..++++|||.+....     . .+
T Consensus       108 ~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~g~~~~v~GWG~~~~~~~~~~~~~~~  187 (289)
T 2bdy_A          108 ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQP  187 (289)
T ss_dssp             EEEEEEEEECTTCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESSCSSCC-------CCC
T ss_pred             eeeeEEEEECCCCCCCCCCCCeEEEEEECCccccCCcccccCCCCccccccccCCCCEEEEECCCcCCCccccCcccccc
Confidence            678999999999985 467899999999999999999999999874321   3467889999999875431     1 25


Q ss_pred             ccceeEeeeecc--ccccccc--CCCCEEEEeeCC---CCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCC
Q psy10841        184 DHMREVQVPILP--ACKHYED--RIADVICAGMPQ---GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNE  256 (286)
Q Consensus       184 ~~l~~~~~~~~~--~c~~~~~--~~~~~~C~~~~~---~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~  256 (286)
                      ..|+++.+++++  .|+..+.  ..+.+||++...   ...+.|.|||||||++... .+++|+|+||+|||.+|...+.
T Consensus       188 ~~L~~~~v~i~~~~~C~~~~~~~i~~~~iCag~~~~~~~~~~~C~GDSGGPLv~~~~-~~~~~~l~GIvS~g~~C~~~~~  266 (289)
T 2bdy_A          188 SVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSP-FNNRWYQMGIVSWGEGCDRDGK  266 (289)
T ss_dssp             SBCEEEEEEBCCHHHHHHTCSSCCCTTEEEECCCGGGCCCCBCCTTCTTCEEEEECT-TTCCEEEEEEEEECSSSSCTTC
T ss_pred             ccceEEEEEEECHHHhhccccCcCCCCEEeccCCCCCCCCCccCCCCCccceEEEEC-CCCCEEEEEEEEECCCCCCCCC
Confidence            689999999988  5876543  567899997532   2568999999999998752 3678999999999999998788


Q ss_pred             CeeEEeCCCcHHHHHhhhccc
Q psy10841        257 PGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       257 p~v~t~v~~~~~WI~~~~~~~  277 (286)
                      |++||||++|++||++++++.
T Consensus       267 p~vyt~V~~y~~WI~~~i~~~  287 (289)
T 2bdy_A          267 YGFYTHVFRLKKWIQKVIDQF  287 (289)
T ss_dssp             CEEEEETGGGHHHHHHHHHC-
T ss_pred             CEEEEEHHHHHHHHHHHHHhc
Confidence            999999999999999998754

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=100.00  E-value=8.5e-52  Score=370.80  Aligned_cols=246  Identities=30%  Similarity=0.618  Sum_probs=202.7

Q ss_pred             cCCCCCCccC--CCceecC-eeCCCCccceEEEEeeC--------CeEEeEEEEeeCCEEEeccCCcCCCCC--ceEEEE
Q psy10841         33 TDMAGNPILG--SGRVVGG-KKAELGAWPWLIALYRD--------GFFHCGGVVLDESWVMTAAHCVDGFEK--HYFEVY   99 (286)
Q Consensus        33 ~~~~~~~~~~--~~~i~~g-~~a~~~~~Pw~v~i~~~--------~~~~C~GtLIs~~~VLTaAhC~~~~~~--~~~~v~   99 (286)
                      ...||.....  ..||+|| ++|..++|||+|+|+..        ..++|+||||+++||||||||+.....  ..+.|+
T Consensus       115 ~~~CG~~~~~~~~~rIvgG~~~a~~~e~PW~v~l~~~~~~~~~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~V~  194 (394)
T 2b9l_A          115 PSFCGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQSNLDAIKIR  194 (394)
T ss_dssp             CCCTTBCCTTCSSCEEESCSSBCCTTSSTTEEEEEECC------CCSEEEEEEEEETTEEEECHHHHGGGTTCGGGEEEE
T ss_pred             CCCCCCCCCCCCCceeeCCccccCCCCCCcEEEEeeccccccccccceEeeEEEEeCCEEEeccceecCCCCCcccEEEE
Confidence            3567765432  3499999 89999999999999753        258999999999999999999976443  678999


Q ss_pred             EeeeecccCCC--CceEEeeeEEEECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccC
Q psy10841        100 AGMLRRFSFSP--TEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVF  177 (286)
Q Consensus       100 ~g~~~~~~~~~--~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~  177 (286)
                      +|.++......  ..+.+.|+++++||+|+.....||||||||++|+.|+++++|||||..... ..+..++++|||.+.
T Consensus       195 ~G~~~~~~~~~~~~~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~pv~~~~~v~PicLp~~~~~-~~~~~~~v~GWG~t~  273 (394)
T 2b9l_A          195 AGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQQSQI-FDSTECFASGWGKKE  273 (394)
T ss_dssp             ESCCBTTCCCSSSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCBCCTTCCCCBCCCTTCC-CCCSCEEEEECCTTT
T ss_pred             eceeeccCCcCCCccEEEEEEEEEECCCCCCCccccceEEEEecCccccCCceeeeEcCCcccC-ccCCEEEEEeccCcc
Confidence            99887654322  357889999999999999888999999999999999999999999975433 345889999999875


Q ss_pred             CC--CCCCccceeEeeeecc--cccccc---------cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEE
Q psy10841        178 EH--GPDPDHMREVQVPILP--ACKHYE---------DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGV  244 (286)
Q Consensus       178 ~~--~~~~~~l~~~~~~~~~--~c~~~~---------~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI  244 (286)
                      ..  +..+..|+++.+++++  +|+..+         ...+.+||++. ..+.+.|.|||||||++...+.+++|+|+||
T Consensus       274 ~~~~~~~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~~~i~~~~iCAg~-~~g~d~C~GDSGGPLv~~~~~~~~~~~lvGI  352 (394)
T 2b9l_A          274 FGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGG-EQGKDTCTGDGGSPLFCPDPRNPSRYMQMGI  352 (394)
T ss_dssp             TTCTTSSCCBCEEEEECEECHHHHHHHHHTTTTCTTCCCCTTEEEECC-BSSCSCCSSCTTCEEEEEETTEEEEEEEEEE
T ss_pred             CCCCCcccccceEEEEEEECHHHHHHHHhhcccccceecCCCEEEeeC-CCCCcCCCCCcchhhEEEEcCCCCeEEEEEE
Confidence            43  2346789999999998  587643         24678999985 3467899999999999975434678999999


Q ss_pred             EEecCCCCCCCCCeeEEeCCCcHHHHHhhhcccccc
Q psy10841        245 VSHGEGCARPNEPGVYTRVSQFVPWLMSNSERAKVE  280 (286)
Q Consensus       245 ~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~~~~~  280 (286)
                      +|||.+|+..+.|+|||||++|++||+++++...++
T Consensus       353 vS~G~~C~~~~~PgVYT~V~~y~~WI~~~i~~~~~~  388 (394)
T 2b9l_A          353 VAWGIGCGDENVPGVYANVAHFRNWIDQEMQAKGLS  388 (394)
T ss_dssp             ESCTTCCCBSSSCEEEEEGGGGHHHHHHHHHHTTCC
T ss_pred             EEECCCCCCCCCCeEEEEHHHhHHHHHHHHHhcCCC
Confidence            999999987788999999999999999999876554

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=100.00  E-value=1.9e-51  Score=342.98  Aligned_cols=218  Identities=35%  Similarity=0.682  Sum_probs=189.1

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|+|+.++.++|+||||+++||||||||+.+.....+.|++|..+..   ...+.+.|+++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~v~~G~~~~~---~~~~~~~v~~i~~hp~   77 (224)
T 1pq7_A            1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRT---SGGITSSLSSVRVHPS   77 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSCGGGEEEEESCSBSS---SSSEEECEEEEEECTT
T ss_pred             CCCCEECCCCCcCeEEEEEECCCeEEEEEEecCCEEEEcHHccCCCCCCceEEEeCcceec---CCCEEEEEEEEEECCC
Confidence            6899999999999999999888899999999999999999999876667889999987653   3568899999999999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCC-CCCccceeEeeeecc--ccccccc
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPILP--ACKHYED  202 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~--~c~~~~~  202 (286)
                      |+..  .+|||||||++++.|+++++|||||........+..++++|||.+...+ .....|+++.+++++  .|+..+.
T Consensus        78 y~~~--~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~  155 (224)
T 1pq7_A           78 YSGN--NNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYG  155 (224)
T ss_dssp             CBTT--BTCCEEEEESSCCCCBTTBCCCCBCCTTCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHHHHHC
T ss_pred             CCCC--CCCEEEEEeCCCCcCCCcccceecCCcccCCCCCCEEEEEecCCcCCCCCcccceeeEeEEEEEcHHHhhHhhc
Confidence            9876  7999999999999999999999999644555678899999999886655 456789999999988  5876543


Q ss_pred             ---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhh
Q psy10841        203 ---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNS  274 (286)
Q Consensus       203 ---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~  274 (286)
                         ..+.+||++......+.|.|||||||++..    +  +|+||+||+..|...+.|++||||++|++||++++
T Consensus       156 ~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----g--~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i  224 (224)
T 1pq7_A          156 TSAITNQMFCAGVSSGGKDSCQGDSGGPIVDSS----N--TLIGAVSWGNGCARPNYSGVYASVGALRSFIDTYA  224 (224)
T ss_dssp             TTTSCTTEEEECCTTCCCBCCTTCTTCEEECTT----C--CEEEEEEECSSSSCTTCCEEEEETTTSHHHHHHHC
T ss_pred             CCCCCCCeEEeecCCCCCCCCcCCCCcceECcC----C--eEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHhhC
Confidence               567899998655678999999999999742    1  59999999999988788999999999999999875

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=100.00  E-value=4.6e-51  Score=341.25  Aligned_cols=218  Identities=31%  Similarity=0.585  Sum_probs=187.6

Q ss_pred             eecCeeCCCCccceEEEEee--CC-eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYR--DG-FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVM  122 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~--~~-~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~  122 (286)
                      |+||++|..++|||+|+|+.  ++ .++|+||||+++||||||||+.+    .+.|++|..+........+.+.|+++++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~----~~~v~~G~~~~~~~~~~~~~~~v~~i~~   76 (227)
T 1iau_A            1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCWGS----SINVTLGAHNIKEQEPTQQFIPVKRPIP   76 (227)
T ss_dssp             CBTCEECCTTSSTTEEEEEEECSSCEEEEEEEEEETTEEEECGGGCCS----EEEEEESCSBTTSCCTTCEEEEEEEEEE
T ss_pred             CCCCeECCCCCcCcEEEEEEECCCCceEEEEEEEcCCEEEECHHhCCC----ceEEEEccccccCCCCccEEEEEEEEEC
Confidence            68999999999999999964  34 48999999999999999999953    5789999888766555678899999999


Q ss_pred             CCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccc
Q psy10841        123 HSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHY  200 (286)
Q Consensus       123 hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~  200 (286)
                      ||+|+.....+|||||||++|+.|++.++|||||........++.++++|||.+...+..+..|+++.+++++  +|+..
T Consensus        77 Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~  156 (227)
T 1iau_A           77 HPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESD  156 (227)
T ss_dssp             CTTCCTTTCTTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHHHH
T ss_pred             CCCCCCCCCCCCeEEEEECCcccCCCceecccCCCCCCCCCCCCEEEEEEcccCCCCCCcCceeeEeeeeeechHHhhhH
Confidence            9999998889999999999999999999999999866555678899999999887666677889999999988  58765


Q ss_pred             cc---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        201 ED---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       201 ~~---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      +.   ....+||++......+.|.|||||||++..       +|+||+|||  |.....|++||||++|++||++++++
T Consensus       157 ~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-------~l~Gi~S~g--c~~~~~p~vyt~v~~~~~WI~~~~~~  226 (227)
T 1iau_A          157 LRHYYDSTIELCVGDPEIKKTSFKGDSGGPLVCNK-------VAQGIVSYG--RNNGMPPRACTKVSSFVHWIKKTMKR  226 (227)
T ss_dssp             TTTTCCTTTEEEESCTTSCCBCCTTCTTSEEEETT-------EEEEEEEEE--CTTSCSCEEEEEGGGGHHHHHHHHHC
T ss_pred             hccccCCCcEEEeECCCCCCeeeecCCCchheEee-------EEEEEEeEe--cCCCCCCeEEEEHHHHHHHHHHHHhh
Confidence            43   234499998755568999999999999832       699999999  77656799999999999999999874

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=2e-51  Score=342.55  Aligned_cols=217  Identities=33%  Similarity=0.702  Sum_probs=186.8

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++|..++|||+|+|+ .+.++|+||||+++||||||||+.    ..+.|++|..+........+.+.|.++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~-~~~~~CgGsLIs~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~   75 (223)
T 3mfj_A            1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYK----SGIQVRLGEDNINVVEGNEQFISASKSIVHPS   75 (223)
T ss_dssp             CBSCEECCTTSSTTEEEEE-SSSEEEEEEEEETTEEEECGGGCC----SSCEEEESCSSTTSCCSCCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCcCCEEEEEE-cCCeEEEEEEecCCEEEEhHHhcC----CCcEEEECCceecccCCCcEEEEeeEEEECCC
Confidence            6899999999999999994 567899999999999999999993    35678999887665455678899999999999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCC-CCCCccceeEeeeecc--ccccccc
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEH-GPDPDHMREVQVPILP--ACKHYED  202 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~~~~~--~c~~~~~  202 (286)
                      |+.....+|||||||++|+.|++.++|||||...  ...+..++++|||.+... ...+..|+++.+++++  +|+..+.
T Consensus        76 y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~--~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~  153 (223)
T 3mfj_A           76 YNSNTLNNDIMLIKLKSAASLNSRVASISLPTSC--ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYP  153 (223)
T ss_dssp             CCTTTCTTCCEEEEESSCCCCBTTBCCCBCCSSC--CCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHST
T ss_pred             CCCCCCCCCEEEEEeCCCcccCCcEeeeECCCCC--CCCCCEEEEEeeeccCCCCCcccchheEEEEEEeCHHHhhhhhc
Confidence            9998889999999999999999999999999743  356789999999988533 3456789999999988  5876553


Q ss_pred             --CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        203 --RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       203 --~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                        ..+.+||++......+.|.|||||||++..       +|+||+||+..|...+.|++||||++|++||++++++
T Consensus       154 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-------~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i~~  222 (223)
T 3mfj_A          154 GQITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-------KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIAS  222 (223)
T ss_dssp             TTCCTTEEEESCTTSSCBCCTTCTTCEEEETT-------EEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHHH
T ss_pred             CcCCCCEEEccCCCCCCCcCCCCcccceEECC-------EEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHhc
Confidence              567899998655667899999999999832       4999999999998777899999999999999999864

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=100.00  E-value=5.6e-51  Score=342.68  Aligned_cols=222  Identities=34%  Similarity=0.672  Sum_probs=191.1

Q ss_pred             eecCeeCCCCccceEEEEee--CCe--EEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYR--DGF--FHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIV  121 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~--~~~--~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~  121 (286)
                      |+||+++..++|||+|+|+.  ++.  ++|+||||+++||||||||+...  ..+.|++|..+........+.+.|++++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~--~~~~V~~G~~~~~~~~~~~~~~~v~~i~   78 (236)
T 1elt_A            1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSA--RTWRVVLGEHNLNTNEGKEQIMTVNSVF   78 (236)
T ss_dssp             CBSSEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECHHHHSSC--CCEEEEESCSBTTSCCSCCEEECEEEEE
T ss_pred             CCCCEECCCCCCCCEEEEEEecCCceeeEEEEEEEeCCEEEECHHhhCCc--CceEEEEccccCCCCCCCcEEEEEEEEE
Confidence            68999999999999999975  343  78999999999999999999653  5688999988876555556889999999


Q ss_pred             ECCCCCCCCC--CCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cc
Q psy10841        122 MHSMFKRAEM--TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC  197 (286)
Q Consensus       122 ~hp~y~~~~~--~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c  197 (286)
                      +||+|+....  .+|||||||++|+.|++.++|||||........+..++++|||.+...+..+..+++..+++++  .|
T Consensus        79 ~hp~y~~~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C  158 (236)
T 1elt_A           79 IHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATC  158 (236)
T ss_dssp             ECTTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCCEEEEESCCSSTTCCCCSBCEEEECCEECHHHH
T ss_pred             ECCCCCCCCCCCCccEEEEECCCCCccCCcEEeccCCCccccCCCCCEEEEEeCCCcCCCCCcChhheEeEeeecCHHHh
Confidence            9999998876  8999999999999999999999999865555677899999999887666667889999999988  58


Q ss_pred             ccc--c--cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC--CCCCCCCCeeEEeCCCcHHHHH
Q psy10841        198 KHY--E--DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWLM  271 (286)
Q Consensus       198 ~~~--~--~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~--~c~~~~~p~v~t~v~~~~~WI~  271 (286)
                      +..  +  ...+.+||++. . ..+.|.|||||||++..   +++|+|+||+||+.  +|...+.|++||||++|++||+
T Consensus       159 ~~~~~~~~~~~~~~~Ca~~-~-~~~~C~GDSGgPL~~~~---~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~  233 (236)
T 1elt_A          159 SSSGWWGSTVKTTMVCAGG-G-ANSGCNGDSGGPLNCQV---NGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMN  233 (236)
T ss_dssp             TSTTTTGGGSCTTEEEECC-S-SCBCCTTCTTCEEEEEE---TTEEEEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHH
T ss_pred             ccccccCCcCCcceEEecC-C-CCccCCCCCCCeeEEEE---CCEEEEEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHH
Confidence            764  2  25678999984 2 47899999999999976   67899999999985  7987778999999999999999


Q ss_pred             hhh
Q psy10841        272 SNS  274 (286)
Q Consensus       272 ~~~  274 (286)
                      ++|
T Consensus       234 ~~i  236 (236)
T 1elt_A          234 GIM  236 (236)
T ss_dssp             HHC
T ss_pred             hhC
Confidence            875

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=100.00  E-value=9.2e-51  Score=342.22  Aligned_cols=226  Identities=31%  Similarity=0.562  Sum_probs=194.1

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccC--CCCceEEeeeEEEEC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSF--SPTEQVRPVSRIVMH  123 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~--~~~~~~~~v~~~~~h  123 (286)
                      |+||+++.. +|||+|+|+..+.++|+||||+++||||||||+.......+.|++|..+....  ....+.+.|.+++.|
T Consensus         1 IvgG~~a~~-~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~~~~~   79 (240)
T 1si5_H            1 VVNGIPTRT-NIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYG   79 (240)
T ss_dssp             CBSCEECSS-CCTTEEEEEESSSEEEEEEEEETTEEEEEGGGCSSSCGGGEEEEESCSBSSCSTTTTTCEEEEEEEEEEC
T ss_pred             CCCCeeCCC-CCCeEEEEEeCCCeEEEEEEeeCCEEEEhHHhcCCCCCccEEEEEeeeecCCCCCCCcceEEEEEEEEcC
Confidence            689999999 99999999888889999999999999999999987666788999998876543  335678899999999


Q ss_pred             CCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccccc
Q psy10841        124 SMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYE  201 (286)
Q Consensus       124 p~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~  201 (286)
                      |+      .+|||||||++|+.|++.++|||||........+..++++|||.+.... ....|++..+.+++  .|+..+
T Consensus        80 p~------~~DiALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~L~~~~~~~~~~~~C~~~~  152 (240)
T 1si5_H           80 PE------GSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLIN-YDGLLRVAHLYIMGNEKCSQHH  152 (240)
T ss_dssp             SS------TTCEEEEEESSCCCCSSSCCCCBCCCTTCCCCTTCEEEEEESSCCCCSS-CCCBCEEEEEEEECGGGTCC--
T ss_pred             CC------CCcEEEEEECCccccCCceeccCcCCcCCCCCCCCEEEEEEeCCCCCCC-CCCeeEEEEEeecCHHHhhhhh
Confidence            86      6899999999999999999999999865556678899999999875433 46789999999887  587654


Q ss_pred             c----CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        202 D----RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       202 ~----~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                      .    ..+.+||++......+.|.|||||||++..   +++|+|+||+||+.+|...+.|++||||+.|++||+++++..
T Consensus       153 ~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~---~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~  229 (240)
T 1si5_H          153 RGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQ---HKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTY  229 (240)
T ss_dssp             -----CCTTEEEEECSSSCCBCCTTCTTCEEEEEC---SSSEEEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHSSC
T ss_pred             cCCccCCCCEEeecCCCCCCEeccCCCCCcEEEEE---CCcEEEEEEEEECCCCCCCCCCcEEEEHHHHHHHHHHHHhcc
Confidence            3    567899998755567899999999999976   789999999999999987788999999999999999999887


Q ss_pred             ccccC
Q psy10841        278 KVECG  282 (286)
Q Consensus       278 ~~~~~  282 (286)
                      ..+++
T Consensus       230 ~~~~~  234 (240)
T 1si5_H          230 KVPQS  234 (240)
T ss_dssp             CCCCC
T ss_pred             Ccccc
Confidence            76654

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=100.00  E-value=3.5e-51  Score=344.99  Aligned_cols=224  Identities=33%  Similarity=0.632  Sum_probs=190.8

Q ss_pred             eecCeeCCCCccceEEEEeeCC---eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRDG---FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVM  122 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~---~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~  122 (286)
                      |+||++|..++|||+|+|+...   .++|+||||+++||||||||+.......+.|++|..+.... ...+.+.|+++++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~-~~~~~~~v~~i~~   79 (241)
T 1m9u_A            1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGLWQQSDT-SGTQTANVDSYTM   79 (241)
T ss_dssp             CBTCEECCTTSSTTEEEEEEESSSEEEEEEEEECSSSEEEECHHHHTTCCGGGEEEEESCSBTTCC-TTCEEEEEEEEEE
T ss_pred             CCCCeECCCCCcCeEEEEEecCCceeeeeEEEEEeCCEEEecHHhCCCCCcceEEEEEEeecCCCC-CCceEEEEEEEEe
Confidence            6899999999999999997643   48899999999999999999987666788999998876542 3568899999999


Q ss_pred             CCCC--CCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccc
Q psy10841        123 HSMF--KRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK  198 (286)
Q Consensus       123 hp~y--~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~  198 (286)
                      ||+|  +.....+|||||||++|+.|++.++|||||........+..++++|||.+...+..+..|+++.+++++  +|+
T Consensus        80 hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~  159 (241)
T 1m9u_A           80 HENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCT  159 (241)
T ss_dssp             CTTTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSSCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHH
T ss_pred             CCCcCCCCCcccccEEEEEecCccccCCCccccCcCCCcCCCCCCCEEEEEeCcccCCCCCcccceeEeeEEEEcHHHhh
Confidence            9999  667788999999999999999999999999862222377899999999987666667889999999988  587


Q ss_pred             cccc------CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEe----cCCCCCCCCCeeEEeCCCcHH
Q psy10841        199 HYED------RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSH----GEGCARPNEPGVYTRVSQFVP  268 (286)
Q Consensus       199 ~~~~------~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~----~~~c~~~~~p~v~t~v~~~~~  268 (286)
                      ..+.      ..+.+||++......+.|.|||||||++..    ++|+|+||+||    +..|+..+.|++||||++|++
T Consensus       160 ~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~~~~l~Gi~S~~~~~g~~C~~~~~p~vyt~V~~~~~  235 (241)
T 1m9u_A          160 AAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPD----GGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLG  235 (241)
T ss_dssp             HHHTTSTTCCCCTTEEEECCTTSCCBCCTTCTTCEEEEES----SSEEEEEEEEECCBCTTSCBCTTSCEEEEEGGGTHH
T ss_pred             hhhcccCCCcccCCcEEECcCCCCCeeecCcCCccEEEeC----CCEEEEEEEEEeccCCCCccCCCCCEEEEEhHHhHh
Confidence            6432      567899998655567899999999999852    67899999999    457987778999999999999


Q ss_pred             HHHhhh
Q psy10841        269 WLMSNS  274 (286)
Q Consensus       269 WI~~~~  274 (286)
                      ||+++|
T Consensus       236 WI~~~~  241 (241)
T 1m9u_A          236 WIGDNS  241 (241)
T ss_dssp             HHHHHC
T ss_pred             HHhhhC
Confidence            999875

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=100.00  E-value=9e-53  Score=371.39  Aligned_cols=235  Identities=24%  Similarity=0.476  Sum_probs=188.7

Q ss_pred             CCCCCCcc---CCCceecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCC
Q psy10841         34 DMAGNPIL---GSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSP  110 (286)
Q Consensus        34 ~~~~~~~~---~~~~i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~  110 (286)
                      ..||.+..   ...||+||++|..++|||+|+|+..+.++|+||||+++||||||||+.........+..+.........
T Consensus        88 p~CG~p~~~~~~~~RIvGG~~a~~g~~Pw~v~l~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~~~~~~~~~  167 (347)
T 4f4o_C           88 AVCGKPKNPVDQVQRIMGGSLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAKNLRLGHKNDTKAKDIAPTLRLYVG  167 (347)
T ss_dssp             ECCSCCSSCC-----CCSCCBCCSCCCTTCEEEECTTCCEEECCBCSSSEEEECHHHHTTTSCTTCCHHHHGGGCEEEET
T ss_pred             CCCCCCCCCCCCCCeEECCEECCCCCCCcEEEEEeCCCEEEEEEEEcCCEEEeCcccccCCCCCcceEEeeeeeeeecCC
Confidence            35776443   346999999999999999999998888999999999999999999996544333233222222222233


Q ss_pred             CceEEeeeEEEECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEe
Q psy10841        111 TEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQ  190 (286)
Q Consensus       111 ~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~  190 (286)
                      ..+.+.|+++++||+|+    .+|||||||++|+.|+++++|||||..+ ....+..+++.|||.+. .+..+..|+++.
T Consensus       168 ~~~~~~V~~i~~HP~y~----~nDIALlkL~~~v~~~~~v~PicLp~~~-~~~~g~~~~v~GWG~~~-~~~~s~~L~~~~  241 (347)
T 4f4o_C          168 KKQEVEIEKVIFHPDNS----TVDIGLIKLKQKVPVNERVMPICLPSKD-YVNVGLVGYVSGWGRNA-NLNFTEHLKYVM  241 (347)
T ss_dssp             TTEEECEEEEEECSCTT----TCCCEEEEESSCCCCSSSCCCCBCCSSC-CCCTTCEEEEEECSBCT-TSSBCSSCEEEE
T ss_pred             CeEEEEEEEEEECcCCC----CCCEEEEEECCCccCCCceeeeecCccc-cCCCCcEEEEeccccCC-CCCCCccceEEE
Confidence            56789999999999986    4899999999999999999999999754 34567899999999874 445578899999


Q ss_pred             eeecc--ccccccc-------------------CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC
Q psy10841        191 VPILP--ACKHYED-------------------RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE  249 (286)
Q Consensus       191 ~~~~~--~c~~~~~-------------------~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~  249 (286)
                      +++++  +|+..+.                   ..+.+||++......+.|.|||||||++..+ .+++|+|+||+|||.
T Consensus       242 v~iv~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iCAG~~~~~~d~C~GDSGGPLv~~~~-~~~~~~lvGIvS~G~  320 (347)
T 4f4o_C          242 LPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDK-DDDTWYAAGILSFDK  320 (347)
T ss_dssp             EEEECHHHHHHHHSSCSSGGGCCCCCSSSSCCCCSTTEEEECCCTTCCCCCTTCTTCEEEEEET-TTTEEEEEEEEEECC
T ss_pred             EEEeCHHHHHHHhccccccccccccccccccccccCCeEEecCCCCCCCCCCCCCCcceEEEeC-CCCEEEEEEEEEeCC
Confidence            99998  5865432                   4577999987677789999999999998653 367999999999999


Q ss_pred             CCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        250 GCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       250 ~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      +|.. +.|+|||||++|++||+++|++
T Consensus       321 ~C~~-~~pgVYTrVs~y~~WI~~~i~~  346 (347)
T 4f4o_C          321 SCRT-AEYGVYVRVTSILDWIQTTIAD  346 (347)
T ss_dssp             CTTT-SSCEEEEEHHHHHHHHHHHHTC
T ss_pred             CCCC-CCCeEEEEHHHHHHHHHHHHHc
Confidence            9976 5699999999999999999975

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.7e-51  Score=342.24  Aligned_cols=219  Identities=37%  Similarity=0.716  Sum_probs=188.7

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|+|+..+.++|+||||+++||||||||+.+    .+.|++|.++........+.+.|.++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~----~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~   76 (238)
T 1spj_A            1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCISD----NYQLWLGRHNLFDDENTAQFVHVSESFPHPG   76 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCCS----SEEEEESCSBTTSCCTTCEEECEEEEEECTT
T ss_pred             CCCCEECCCCCCCcEEEEEeCCCeeEEEEEecCCEEEEcHHhCCC----CceEEEEeccccCCCCCceEEEEEEEEcCCC
Confidence            689999999999999999988889999999999999999999953    4688999887765555678899999999999


Q ss_pred             CC-----------CCCCCCceEEEEecCccc-cCCceeeeecCCCCCCCCCCCceEEEEecccCCCC-CCCccceeEeee
Q psy10841        126 FK-----------RAEMTNDLALLQLAAPLR-YNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVP  192 (286)
Q Consensus       126 y~-----------~~~~~~DiAllkL~~~i~-~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~  192 (286)
                      |+           .....+|||||||++|+. |++.++|||||...  ...+..++++|||.+...+ ..+..|+++.++
T Consensus        77 y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~~v~pi~L~~~~--~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~  154 (238)
T 1spj_A           77 FNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEE--PEVGSTCLASGWGSIEPENFSFPDDLQCVDLK  154 (238)
T ss_dssp             SCGGGGCC--CTTTCCCTTCCEEEEESSCCCCSSTTCCCCCCCSSC--CCTTCEEEEEESSCSSSSSCCCCSBCEEEEEE
T ss_pred             ccccccccccccccccCCCCeEEEEECccccccCCceeeccCCCCC--CCCCCEEEEEecCCCCCCCCCCcCcccEEEEe
Confidence            98           456789999999999998 99999999999743  4567899999999886544 456789999999


Q ss_pred             ecc--ccccccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEec-CCCCCCCCCeeEEeCCCcH
Q psy10841        193 ILP--ACKHYED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFV  267 (286)
Q Consensus       193 ~~~--~c~~~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~-~~c~~~~~p~v~t~v~~~~  267 (286)
                      +++  +|+..+.  ..+.+||++......+.|.|||||||++..       +|+||+||| ..|+..+.|++||||++|+
T Consensus       155 ~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-------~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~  227 (238)
T 1spj_A          155 ILPNDECKKAHVQKVTDFMLCVGHLEGGKDTCVGDSGGPLMCDG-------VLQGVTSWGYVPCGTPNKPSVAVRVLSYV  227 (238)
T ss_dssp             EECHHHHHHHCSSCCCTTEEEEECTTCSSBCCTTCTTCEEEETT-------EEEEEEEECCSSTTCTTCCEEEEEGGGGH
T ss_pred             ecCHHHhhhhccCCCCCCeEEeeCCCCCCCCCCCCCCCcEEEcC-------EEEEEEEeCCCCCCCCCCCeEEEEHHHhH
Confidence            988  5876543  567899998655678899999999999732       699999999 5898778899999999999


Q ss_pred             HHHHhhhccc
Q psy10841        268 PWLMSNSERA  277 (286)
Q Consensus       268 ~WI~~~~~~~  277 (286)
                      +||++++++.
T Consensus       228 ~WI~~~i~~~  237 (238)
T 1spj_A          228 KWIEDTIAEN  237 (238)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHhhcC
Confidence            9999998764

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=100.00  E-value=4e-51  Score=343.82  Aligned_cols=219  Identities=38%  Similarity=0.740  Sum_probs=188.0

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|+|+.++.++|+||||+++||||||||+.    ..+.|++|..+........+.+.|+++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~   76 (237)
T 1ao5_A            1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYV----DQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPG   76 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECTTCCC----SSCEEEESCCBSSSCCSSCEECCEEEEEECTT
T ss_pred             CCCCeECCCCCcCCEEEEeeCCCeEEEEEEeeCCEEEECHHHCC----CCCEEEecccccccCCCCcEEEEEEEEEcCCC
Confidence            68999999999999999998888999999999999999999995    35678999887665455567889999999999


Q ss_pred             CCCCCC-----------CCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCC-CCCCccceeEeeee
Q psy10841        126 FKRAEM-----------TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEH-GPDPDHMREVQVPI  193 (286)
Q Consensus       126 y~~~~~-----------~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~~~  193 (286)
                      |+....           .+|||||||++|+.|++.++|||||...  ...+..++++|||.+... ...+..|+++.+++
T Consensus        77 y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~--~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~  154 (237)
T 1ao5_A           77 FNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKE--PKPGSKCLASGWGSITPTRWQKPDDLQCVFITL  154 (237)
T ss_dssp             SCGGGGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSC--CCTTCEEEEEESCCSSCC-CCCCSBCEEEEEEE
T ss_pred             cCcccccccccccccCCCCCEEEEEeCCccccCCceeCCCcCCCC--CCCCCEEEEEECCccCCCCCCCCCcccEEEEEe
Confidence            987654           8999999999999999999999999743  456789999999988654 35577899999999


Q ss_pred             cc--ccccccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEec-CCCCCCCCCeeEEeCCCcHH
Q psy10841        194 LP--ACKHYED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVP  268 (286)
Q Consensus       194 ~~--~c~~~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~-~~c~~~~~p~v~t~v~~~~~  268 (286)
                      ++  +|+..+.  ..+.+||++......+.|.|||||||++..       +|+||+||+ ..|...+.|++||||++|++
T Consensus       155 ~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~  227 (237)
T 1ao5_A          155 LPNENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLICDG-------ILQGTTSYGPVPCGKPGVPAIYTNLIKFNS  227 (237)
T ss_dssp             ECHHHHHHHCSSCCCTTEEEEECTTCSCBCCTTCTTCEEEETT-------EEEEEEEECCSSTTCTTCCEEEECGGGGHH
T ss_pred             cChhHhhhhhcccCCCCEEEEccCCCCCCCCCCCCcceEEECC-------EEeEEEeEcCCCCCCCCCCcEEEEHHHHHH
Confidence            88  5876553  567899998435567899999999999832       699999999 68988788999999999999


Q ss_pred             HHHhhhccc
Q psy10841        269 WLMSNSERA  277 (286)
Q Consensus       269 WI~~~~~~~  277 (286)
                      ||++++++.
T Consensus       228 WI~~~~~~n  236 (237)
T 1ao5_A          228 WIKDTMMKN  236 (237)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhhc
Confidence            999998754

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=100.00  E-value=6.2e-51  Score=344.68  Aligned_cols=224  Identities=38%  Similarity=0.789  Sum_probs=190.3

Q ss_pred             CCceecCeeCCCCccceEEEEeeC-CeEEeEEEEeeCCEEEeccCCcCCCC-CceEEEEEeeeecccCCCCceEEeeeEE
Q psy10841         43 SGRVVGGKKAELGAWPWLIALYRD-GFFHCGGVVLDESWVMTAAHCVDGFE-KHYFEVYAGMLRRFSFSPTEQVRPVSRI  120 (286)
Q Consensus        43 ~~~i~~g~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTaAhC~~~~~-~~~~~v~~g~~~~~~~~~~~~~~~v~~~  120 (286)
                      ..||+||+++..++|||+|+|+.. +.++|+||||+++||||||||+.... ...+.|++|.++........+.+.|.++
T Consensus        15 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~~   94 (247)
T 1ddj_A           15 PGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRL   94 (247)
T ss_dssp             CTTCTTCEECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGGTTCSCGGGCEEEESCSBSSSCCTTCEEEEEEEE
T ss_pred             CCCcCCCEECCCCCCCcEEEEEcCCCCeEEEEEEeeCCEEEEcHHHcCCCCCCccEEEEEcccccCccCCceEEEEeeeE
Confidence            359999999999999999999753 56899999999999999999997643 3567899998776554455678899999


Q ss_pred             EECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccc
Q psy10841        121 VMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK  198 (286)
Q Consensus       121 ~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~  198 (286)
                      +.||.      .+|||||||++|+.|+++++|||||........+..++++|||.+... .....|+++.+++++  .|+
T Consensus        95 ~~hp~------~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~-~~~~~L~~~~~~i~~~~~C~  167 (247)
T 1ddj_A           95 FLEPT------RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGT-FGAGLLKEAQLPVIENKVCN  167 (247)
T ss_dssp             EECTT------SCSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCCSSS-TTTTBCEEEEEEEECHHHHT
T ss_pred             EcCCC------CCcEEEEEeCCceeeCCCEEeeecCCcccCCCCCCEEEEEEcccCCCC-CCCccceEEeeeecCHHHhc
Confidence            99996      589999999999999999999999986555567789999999987532 345789999999988  587


Q ss_pred             ccc----cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhh
Q psy10841        199 HYE----DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNS  274 (286)
Q Consensus       199 ~~~----~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~  274 (286)
                      ...    ...+.+||++......+.|.|||||||++..   +++|+|+||+|||.+|...+.|++||||++|++||++++
T Consensus       168 ~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~---~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~  244 (247)
T 1ddj_A          168 RYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFE---KDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM  244 (247)
T ss_dssp             STTTTTTCCCTTEEEESCSSSCCCBCCSCTTCEEEEEC---SSSEEEEEEECGGGCCBBTTBCEEEEEGGGSHHHHHHHH
T ss_pred             chhccCCCCcCCeEeecCCCCCCccccCcCcCcEEEEE---CCcEEEEEEEEECCCCCCCCCCEEEEEhHHhHHHHHHHh
Confidence            532    2567899998655567899999999999976   678999999999999987778999999999999999998


Q ss_pred             cc
Q psy10841        275 ER  276 (286)
Q Consensus       275 ~~  276 (286)
                      ++
T Consensus       245 ~~  246 (247)
T 1ddj_A          245 RN  246 (247)
T ss_dssp             HT
T ss_pred             hc
Confidence            75

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=1.1e-50  Score=339.07  Aligned_cols=219  Identities=33%  Similarity=0.596  Sum_probs=186.0

Q ss_pred             eecCeeCCCCccceEEEEeeC--C-eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRD--G-FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVM  122 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~--~-~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~  122 (286)
                      |+||+++..++|||+|.|...  + .++|+||||+++||||||||+..    .+.|++|.++........+.+.|+++++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGsLI~~~~VLTAAHC~~~----~~~v~~G~~~~~~~~~~~~~~~v~~i~~   76 (227)
T 1euf_A            1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGS----SINVTLGAHNIMERERTQQVIPVRRPIP   76 (227)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESSSSEEEEEEEEEETTEEEECGGGCCE----EEEEEESCSBTTSCCTTCEEEEEEEEEE
T ss_pred             CCCCeECCCCCcCCEEEEEEeCCCCceEEEEEEeeCCEEEECHHHCCC----CcEEEEcccccCCCCCccEEEEEEEEEe
Confidence            689999999999999999642  3 68999999999999999999953    5789999887765555678899999999


Q ss_pred             CCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccc
Q psy10841        123 HSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHY  200 (286)
Q Consensus       123 hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~  200 (286)
                      ||+|+.....+|||||||++|+.|++.++|||||........+..++++|||.+.........|+++.+++++  +|+..
T Consensus        77 Hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~  156 (227)
T 1euf_A           77 HPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIAR  156 (227)
T ss_dssp             CTTCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCTHHHHTT
T ss_pred             CCCCCCCCCcCceEEEEECCcCcCCCceeccCCCCccccCCCCCEEEEEEEccCCCCCCCchhheEeEeccccHHHhhHh
Confidence            9999998899999999999999999999999999865555678899999999886666667789999999988  58765


Q ss_pred             cc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        201 ED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       201 ~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                      +.  ..+.+||++........|.|||||||++..       +|+||+|||  |.....|++||||++|++||++++++-
T Consensus       157 ~~~~~~~~~~Ca~~~~~~~~~~~GDsGgPL~~~~-------~l~Gi~S~g--c~~~~~p~vyt~V~~y~~WI~~~~~~~  226 (227)
T 1euf_A          157 FKNYIPFTQICAGDPSKRKNSFSGDSGGPLVCNG-------VAQGIVSYG--RNDGTTPDVYTRISSFLSWIHSTMRRY  226 (227)
T ss_dssp             CTTCCTTTEEEESCTTSCCBCCTTCTTCEEEETT-------EEEEEEEEC--CTTCCSCEEEEEGGGTHHHHHHHTC--
T ss_pred             hcCcCCCcEEEccCCCCCCcccccCCCCceEECC-------EEEEEEEEe--CCCCCCCeEEEEHHHhHHHHHHHHhhc
Confidence            43  467799998644435678999999999832       699999998  766677999999999999999998753

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=100.00  E-value=3.2e-51  Score=345.13  Aligned_cols=225  Identities=32%  Similarity=0.655  Sum_probs=192.3

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCC--CCCceEEEEEeeeecccCCCCceEEeeeEEEEC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDG--FEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMH  123 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~--~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~h  123 (286)
                      |+||+++..++|||+|+|+  +.++|+||||+++||||||||+.+  .....+.|.+|..+....  ..+.+.++++++|
T Consensus         1 IvgG~~a~~~~~Pw~v~l~--~~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~~v~~g~~~~~~~--~~~~~~v~~i~~h   76 (242)
T 3tvj_B            1 IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSP--HYTQAWSEAVFIH   76 (242)
T ss_dssp             CBSCEECCTTSSTTEEEEE--SSEEEEEEEETTTEEEECHHHHSTTTTCSSCCEEEESCSBTTCS--CCEEEEEEEEEEC
T ss_pred             CcCCeeCCCCCCCCEEEEe--cCCcEEEEEecCCEEEECHHHCCCCCCCcceEEEEeccccccCc--ccceeeEEEEEeC
Confidence            6899999999999999997  468999999999999999999976  344678899998765432  3477889999999


Q ss_pred             CCCCC-CCCCCceEEEEecCccccCCceeeeecCCCCC--CCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccc
Q psy10841        124 SMFKR-AEMTNDLALLQLAAPLRYNRYVRPICLPDVTE--TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK  198 (286)
Q Consensus       124 p~y~~-~~~~~DiAllkL~~~i~~~~~v~picL~~~~~--~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~  198 (286)
                      |+|+. ....+|||||||++|+.|+++++|||||....  ....+..++++|||.+.. +.....|+++.+.+++  +|+
T Consensus        77 p~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~~GwG~~~~-~~~~~~l~~~~~~i~~~~~C~  155 (242)
T 3tvj_B           77 EGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQR-GFLARNLMYVDIPIVDHQKCT  155 (242)
T ss_dssp             TTCCTTSCSTTCCEEEEESSCCCCBTTBCCCBCCCTTGGGGSCTTCEEEEEESCCCTT-SSCCSBCEEEEEEBCCHHHHH
T ss_pred             CCCCCCCCCcCcEEEEEECCccccCCCEecCCcCCCcccccccCCCEEEEEEeCCCCC-CCcCccceEEeeeEEcHHHHH
Confidence            99997 66789999999999999999999999998554  356778999999998753 5667889999999988  587


Q ss_pred             cccc--------CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEec-CCCCCCCCCeeEEeCCCcHHH
Q psy10841        199 HYED--------RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPW  269 (286)
Q Consensus       199 ~~~~--------~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~-~~c~~~~~p~v~t~v~~~~~W  269 (286)
                      ..+.        ..+.+||++......+.|.|||||||++... .+++|+|+||+||+ ..|...+.|++||||++|++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~-~~~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~W  234 (242)
T 3tvj_B          156 AAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDS-ETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPW  234 (242)
T ss_dssp             HHHHSTTSCTTCCCTTEEEESCTTCCSBCCTTCTTCEEEEEET-TTTEEEEEEEEEEEESSTTCTTCCEEEEEGGGGHHH
T ss_pred             HhhccCCcccccccCCeEEECCCCCCCccccCCCCCeEEEEeC-CCCcEEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHH
Confidence            6542        5678999987666789999999999998652 36799999999999 789887889999999999999


Q ss_pred             HHhhhcc
Q psy10841        270 LMSNSER  276 (286)
Q Consensus       270 I~~~~~~  276 (286)
                      |++++++
T Consensus       235 I~~~i~~  241 (242)
T 3tvj_B          235 IENIISD  241 (242)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9998864

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=100.00  E-value=8.2e-51  Score=339.73  Aligned_cols=218  Identities=31%  Similarity=0.640  Sum_probs=186.8

Q ss_pred             eecCeeCCCCccceEEEEeeC-CeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccC-CCCceEEeeeEEEEC
Q psy10841         46 VVGGKKAELGAWPWLIALYRD-GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSF-SPTEQVRPVSRIVMH  123 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~-~~~~~~~~v~~~~~h  123 (286)
                      |+||++|..++|||+|.|+.. +.++|+||||+++||||||||+..    .+.|++|.++.... ....+.+.+.++++|
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~~----~~~v~~G~~~~~~~~~~~~~~~~v~~~~~H   76 (227)
T 2psx_A            1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRKK----VFRVRLGHYSLSPVYESGQQMFQGVKSIPH   76 (227)
T ss_dssp             CBTCEECCTTSCTTEEEEEETTTEEEEEEEEEETTEEEECGGGCCS----SCEEEESCCBSSCCCCTTCEEEEEEEEEEC
T ss_pred             CCCCEECCCCCCCCEEEEEecCCCceEEEEEEcCCEEEEhHHcCCC----CcEEEEeeeecccCCCCCcEEEEEEEEEeC
Confidence            689999999999999999865 678999999999999999999863    45789998776543 335678899999999


Q ss_pred             CCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCC-CCCccceeEeeeecc--ccccc
Q psy10841        124 SMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPILP--ACKHY  200 (286)
Q Consensus       124 p~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~--~c~~~  200 (286)
                      |+|+.....+|||||||++|+.|++.++|||||.  .....+..++++|||.+.... ..+..|+++.+++++  +|+..
T Consensus        77 p~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~--~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~  154 (227)
T 2psx_A           77 PGYSHPGHSNDLMLIKLNRRIRPTKDVRPINVSS--HCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDA  154 (227)
T ss_dssp             TTCCSSSCTTCCEEEEESSCCCCCSSSCCCCBCS--SCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEBCCHHHHHHH
T ss_pred             CCCCCCCCCCCEEEEEeCCCCCCCCceeeeECCC--CCCCCCCEEEEEeCcccCCCCCCCCchheEEEEEecCHhHhhhh
Confidence            9999888899999999999999999999999986  345667899999999886554 456789999999988  58765


Q ss_pred             cc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEec-CCCCCCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        201 ED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       201 ~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~-~~c~~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                      +.  ..+.+||++. ....+.|.|||||||++..       +|+||+||| ..|...+.|++||||++|++||++++++.
T Consensus       155 ~~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~-------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  226 (227)
T 2psx_A          155 YPRQIDDTMFCAGD-KAGRDSCQGDSGGPVVCNG-------SLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQAN  226 (227)
T ss_dssp             STTTCCTTEEEECC-STTCBCCTTCTTCEEEETT-------EEEEEEEECCSSTTCTTCCEEEEEGGGCHHHHHHHHHHT
T ss_pred             cCCCCCCCEEcccC-CCCCccCCCCCCcceeeCC-------EEEEEEeecCCCCCCCCCCcEEEEHHHhHHHHHHHHhcC
Confidence            53  5678999985 4567899999999999843       699999999 58987788999999999999999998764

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=100.00  E-value=6.9e-51  Score=342.36  Aligned_cols=218  Identities=33%  Similarity=0.638  Sum_probs=186.6

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++|..++|||+|+|+..+.++|+||||+++||||||||+.+.    ..|++|..+........+.+.|+++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~~----~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~   76 (237)
T 2zch_P            1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRNK----SVILLGRHSLFHPEDTGQVFQVSHSFPHPL   76 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEESSSSEEEEEEEEETTEEEECGGGCCSS----CEEEESCSBSSSCCTTCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCCCCEEEEeeCCCeEEEEEEecCCEEEEcHHhcCCC----ceEEEecccccCCCCCcEEEEEEEEecCCC
Confidence            6899999999999999998877899999999999999999999653    368889877665555678899999999999


Q ss_pred             CCCCCC-----------CCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCC-CCccceeEeeee
Q psy10841        126 FKRAEM-----------TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGP-DPDHMREVQVPI  193 (286)
Q Consensus       126 y~~~~~-----------~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~-~~~~l~~~~~~~  193 (286)
                      |+....           .+|||||||++|+.|++.++|||||..  ....+..++++|||.+...+. .+..|+++.+.+
T Consensus        77 y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~Lp~~--~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~  154 (237)
T 2zch_P           77 YDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQ--EPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHV  154 (237)
T ss_dssp             SCGGGGTSSSCCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCSS--CCCTTCEEEEEESCCSSSSSCCCCSBCEEEEEEE
T ss_pred             cchhhhcccccccCCCCCcceEEEEeCCCCccCCcEeeeECCCC--CCCCCCEEEEEeCCccCCCCCcCCcccEEeEEEE
Confidence            987654           789999999999999999999999974  345678999999998865543 367899999999


Q ss_pred             cc--ccccccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCCCCCCCeeEEeCCCcHH
Q psy10841        194 LP--ACKHYED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVP  268 (286)
Q Consensus       194 ~~--~c~~~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~~~~~p~v~t~v~~~~~  268 (286)
                      ++  .|+..+.  ..+.+||++......+.|.|||||||++..       +|+||+|||. .|...+.|++||||++|++
T Consensus       155 ~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~  227 (237)
T 2zch_P          155 ISNDVCAQVHPQKVTKFMLCAGRWTGGKSTCSGDSGGPLVCNG-------VLQGITSWGSEPCALPERPSLYTKVVHYRK  227 (237)
T ss_dssp             ECHHHHHHHCSSBCCTTEEEEECTTCSCBCCTTCTTCEEESSS-------SEEEEEEECCSSTTCTTCCEEEEEGGGGHH
T ss_pred             eCHHHhcccccCCCCceEEeecCCCCCCcccCCCccCeEEECC-------EEEEEEEeCcCCCCCCCCCcEEEEHHHHHH
Confidence            88  5876543  567899998755667899999999999743       5999999998 7987788999999999999


Q ss_pred             HHHhhhcc
Q psy10841        269 WLMSNSER  276 (286)
Q Consensus       269 WI~~~~~~  276 (286)
                      ||++++++
T Consensus       228 WI~~~i~~  235 (237)
T 2zch_P          228 WIKDTIVA  235 (237)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99999875

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=100.00  E-value=1.1e-50  Score=338.17  Aligned_cols=216  Identities=30%  Similarity=0.642  Sum_probs=185.3

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccC-CCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSF-SPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~-~~~~~~~~v~~~~~hp  124 (286)
                      |+||+++..++|||+|+|+.++.++|+||||+++||||||||+.+    .+.|.+|..+.... ....+.+.+.++++||
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~----~~~v~~g~~~~~~~~~~~~~~~~v~~~~~Hp   76 (223)
T 2bdg_A            1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQN----SYTIGLGLHSLEADQEPGSQMVEASLSVRHP   76 (223)
T ss_dssp             CBTCEECCTTSSTTEEEEECSSCEEEEEEEEETTEEEECGGGCCS----SEEEEESCSBSCGGGCTTCEEEEEEEEEECT
T ss_pred             CCCCEECCCCCCCcEEEEeeCCCEEEEEEEecCCEEEEhHHhCCC----CeEEEEeeeecCCCCCCCcEEEEEEEEEeCC
Confidence            689999999999999999887789999999999999999999953    46788887765432 2345788999999999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYED  202 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~~  202 (286)
                      +|+.....+|||||||++|+.|++.++||||+..  ....+..++++|||.+... ..+..|+++.+++++  +|+..+.
T Consensus        77 ~y~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~--~~~~~~~~~v~GwG~~~~~-~~~~~L~~~~~~~~~~~~C~~~~~  153 (223)
T 2bdg_A           77 EYNRPLLANDLMLIKLDESVSESDTIRSISIASQ--CPTAGNSCLVSGWGLLANG-RMPTVLQCVNVSVVSEEVCSKLYD  153 (223)
T ss_dssp             TTTSSTTCSCCEEEEESSCCCCCSSCCCCCBCSS--CCCTTCEEEEEESCCCTTS-CCCSBCEEEEEEBCCHHHHHHHST
T ss_pred             CCCCCCCcCcEEEEEECCcccCCCceecccCCCC--CCCCCCEEEEEeCcccCCC-CCCCcceEEEEEEeCHHHhhhhhC
Confidence            9999888999999999999999999999999874  3456789999999987543 556789999999988  5876553


Q ss_pred             --CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        203 --RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       203 --~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                        ..+.+||++......+.|.|||||||++..       +|+||+|||. .|+..+.|++||||++|++||+++++
T Consensus       154 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~-------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~  222 (223)
T 2bdg_A          154 PLYHPSMFCAGGGQDQKDSCNGDSGGPLICNG-------YLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQ  222 (223)
T ss_dssp             TTCCTTEEEECCSTTCCBCCTTCTTCEEEETT-------EEEEEEEECCSSTTCTTCCEEEECGGGTHHHHHHHHH
T ss_pred             CCCCCCeEeccCCCCCCCcCCCCCCchheEcc-------EEEEEEEecCCCCCCCCCCcEEEEHHHhHHHHHHHhc
Confidence              567899998655667899999999999842       6999999997 79877889999999999999999885

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=100.00  E-value=1.8e-50  Score=337.58  Aligned_cols=218  Identities=30%  Similarity=0.565  Sum_probs=191.0

Q ss_pred             eecCeeCCCCccceEEEEeeC---C-eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRD---G-FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIV  121 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~---~-~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~  121 (286)
                      |+||+++..++|||+|.|...   + .++|+||||+++||||||||+.    ..+.|++|..+........+.+.|.+++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~~~   76 (227)
T 3fzz_A            1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKG----RSMTVTLGAHNIKAKEETQQIIPVAKAI   76 (227)
T ss_dssp             CBTCEECCTTSSTTEEEEEEECSSSCEEEEEEEEEETTEEEECTTCCC----EEEEEEESCSBTTSCCTTCEEEEEEEEE
T ss_pred             CCCCEECCCCCcCCEEEEEEEeCCCceeEEEEEEEeCCEEEECcccCC----CCcEEEEcccccCCCCCCceEEEEEEEE
Confidence            689999999999999999742   3 6899999999999999999983    4678999988877666677889999999


Q ss_pred             ECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccc
Q psy10841        122 MHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       122 ~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~  199 (286)
                      +||+|+.....+|||||||++|+.|++.++|||||........++.++++|||.+...+.....|+++.+.+++  .|+.
T Consensus        77 ~hp~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~  156 (227)
T 3fzz_A           77 PHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCES  156 (227)
T ss_dssp             ECTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSCSSTTSCCCSBCEEEEEEBCCHHHHHH
T ss_pred             ECcCCCCCCCcCCEEEEEECCcCCCCCcccccCCCCcccCCCCCCEEEEEECCcccCCCCCCCeeeEEEeeeecHHHhhh
Confidence            99999999899999999999999999999999999876666778999999999887777778889999999998  5876


Q ss_pred             ccc---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        200 YED---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       200 ~~~---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      .+.   ....++|++......+.|.|||||||++..       +|+||+|||..|+..  |++||||++|++||+++|++
T Consensus       157 ~~~~~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~-------~l~Gi~S~g~~c~~~--p~vyt~V~~~~~WI~~~i~~  227 (227)
T 3fzz_A          157 QFQSSYNRANEICVGDSKIKGASFEEDSGGPLVCKR-------AAAGIVSYGQTDGSA--PQVFTRVLSFVSWIKKTMKH  227 (227)
T ss_dssp             HHTTTCCTTTEEEECCCSSCBCCTTTTTTCEEEETT-------EEEEEEEECCTTCSS--SEEEEEGGGTHHHHHHHHTC
T ss_pred             hhccccCCCceEEEeCCCCCCcccccCCccceEEec-------CCcEEEEECCCCCCC--CeEEEEhHHhHHHHHHHHhC
Confidence            442   367899998766678899999999999843       699999999988753  99999999999999999874

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=100.00  E-value=9.5e-51  Score=337.32  Aligned_cols=215  Identities=30%  Similarity=0.555  Sum_probs=188.1

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|+|+.++.++|+||||+++||||||||+.+.....+.|++|..+........+.+.|++++.| +
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h-~   79 (218)
T 2z7f_E            1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFEN-G   79 (218)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSCGGGCEEEESCSBTTSCCTTCEEEEEEEEEES-C
T ss_pred             CCCCEECCCCccCcEEEEEeCCCcEEEEEEccCCEEEEcHHhcCCCCcCcEEEEEeceecCCCCCceEEEEEEEEEcc-C
Confidence            689999999999999999988889999999999999999999987666778999998887665556688999999999 9


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc-cccccccCC
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP-ACKHYEDRI  204 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~-~c~~~~~~~  204 (286)
                      |+.....+|||||||++|+.|++.++|||||........+..++++|||.+...+..+..|++..++++. .|+..    
T Consensus        80 y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~C~~~----  155 (218)
T 2z7f_E           80 YDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRS----  155 (218)
T ss_dssp             CBTTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCEEEEEESSBCSSSCCBCSBCEEEEEEEECTTCCTT----
T ss_pred             CCCCCCCCCEEEEEECCcCcCCCceeccCcCCCCCCCCCCCEEEEEEeCCCCCCCCccchheEeeeEEehhHcCcc----
Confidence            9998889999999999999999999999999866555678899999999987666667889998888874 46543    


Q ss_pred             CCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEe--cCCCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        205 ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSH--GEGCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       205 ~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~--~~~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                        ++|++......+.|.|||||||++..       +|+||+||  +. |...+.|++||||++|++||+++++
T Consensus       156 --~~Ca~~~~~~~~~C~GDSGgPl~~~~-------~l~Gi~S~~~g~-C~~~~~p~vyt~V~~~~~WI~~~~~  218 (218)
T 2z7f_E          156 --NVCTLVRGRQAGVCFGDSGSPLVCNG-------LIHGIASFVRGG-CASGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             --SEEEECTTSCCBCCTTCTTCEEEETT-------EEEEEEEEESSS-TTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             --eeeeccCCCCCeeCCCcCCCceEEcc-------EEEEEEEeCCcc-CCCCCCCeEEEEHHHhHHHHHHHhC
Confidence              89998755567899999999999732       69999999  65 8877789999999999999999874

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=1.1e-50  Score=338.02  Aligned_cols=217  Identities=34%  Similarity=0.714  Sum_probs=189.2

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|+|. .+.++|+||||+++||||||||+.+    .+.|++|..+........+.+.|.++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~-~~~~~C~GtLI~~~~VLTAAhC~~~----~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~   75 (223)
T 4i8h_A            1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKS----GIQVRLGEDNINVVEGNEQFISASKSIVHPS   75 (223)
T ss_dssp             CBSCEECCTTSSTTEEEEE-SSSEEEEEEECSSSEEEECGGGCCS----SCEEEESCSSTTSCCSCCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCCCeEEEec-CCCcEEEEEEEcCCEEEecHHhCCC----CcEEEEccccccccCCCcEEEEEeEEEECcC
Confidence            6899999999999999997 4567899999999999999999963    4678999887765556678899999999999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCC-CCCccceeEeeeecc--ccccccc
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPILP--ACKHYED  202 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~--~c~~~~~  202 (286)
                      |+.....+|||||||++++.|++.++|||||...  ...+..++++|||.+...+ .....+++..+.+++  .|+..+.
T Consensus        76 y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~--~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~  153 (223)
T 4i8h_A           76 YNSNTLNNDIMLIKLKSAASLNSRVASISLPTSC--ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYP  153 (223)
T ss_dssp             CCTTTCTTCCEEEEESSCCCCBTTBCCCBCCSSC--CCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHST
T ss_pred             CCCCCCcCCEEEEEECCcCcCCCceeceECCCCC--CCCCCEEEEEecccccCCCCCccccceEEEeeecCHHHHHHhhC
Confidence            9999899999999999999999999999999744  5677899999999876543 346789999999988  5876653


Q ss_pred             --CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        203 --RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       203 --~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                        ..+.+||++......+.|.|||||||++..       +|+||+||+..|+..+.|++||||++|++||++++++
T Consensus       154 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-------~l~Gi~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i~~  222 (223)
T 4i8h_A          154 GQITSNMFCAGYLEGGKDSCQGDSGGPVVCSG-------KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIAS  222 (223)
T ss_dssp             TTCCTTEEEESCTTSSCBCCTTCTTCEEEETT-------EEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred             CCCCCCeEeccCCCCCCccCCCCCCCcEEECC-------EEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence              578899998666778999999999999843       5999999999998878899999999999999999875

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=100.00  E-value=1.5e-50  Score=337.47  Aligned_cols=217  Identities=33%  Similarity=0.674  Sum_probs=185.7

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|+|+.+..++|+||||+++||||||||+.    ..+.|++|..+..  ....+.+.|.++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~----~~~~v~~G~~~~~--~~~~~~~~v~~~~~Hp~   74 (224)
T 2qxi_A            1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKM----NEYTVHLGSDTLG--DRRAQRIKASKSFRHPG   74 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCC----SCEEEEESCSBTT--CTTSEEEEECEEEECTT
T ss_pred             CCCCeECCCCCCCCEEEEeeCCCeEEEEEEecCCEEEEhHHcCC----CCcEEEEeeeecC--CCccEEEEEEEEEECCC
Confidence            68999999999999999976655699999999999999999983    4678999987654  23567889999999999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCC-CCCCCccceeEeeeecc--ccccccc
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFE-HGPDPDHMREVQVPILP--ACKHYED  202 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~-~~~~~~~l~~~~~~~~~--~c~~~~~  202 (286)
                      |+.....+|||||||++|+.|++.++|||||...  ...+..++++|||.+.. ....+..|+++.+++++  +|+..+.
T Consensus        75 y~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~--~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~  152 (224)
T 2qxi_A           75 YSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRC--EPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYK  152 (224)
T ss_dssp             CCTTTCTTCCEEEECSSCCCCBTTBCCCCCCSSC--CCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECHHHHHHHHG
T ss_pred             CCCCCCcCcEEEEEeCCCCcCCCceeeEECCCCC--CCCCCEEEEEeCCccCCCCCCCChhheEEEeeecCHHHhhHHhc
Confidence            9998889999999999999999999999999743  35678999999998753 33456789999999888  5876543


Q ss_pred             --CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEec-CCCCCCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        203 --RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       203 --~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~-~~c~~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                        ..+.+||++......+.|.|||||||++..       +|+||+||+ ..|...+.|++||||++|++||++++++.
T Consensus       153 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  223 (224)
T 2qxi_A          153 DLLENSMLCAGIPDSKKNACNGDSGGPLVCRG-------TLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKKH  223 (224)
T ss_dssp             GGCCTTEEEEECTTCCCBCCTTCTTCEEEETT-------EEEEEEEECCSSSCCTTCCEEEEEGGGSHHHHHHHHHHT
T ss_pred             CcCCCCeEEecCCCCCCccCCCCccccEEECC-------EEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHHhcc
Confidence              567899998655667899999999999832       599999999 58987788999999999999999998764

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=100.00  E-value=1.7e-50  Score=337.22  Aligned_cols=217  Identities=33%  Similarity=0.600  Sum_probs=184.7

Q ss_pred             eecCeeCCCCccceEEEEeeC--C-eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRD--G-FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVM  122 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~--~-~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~  122 (286)
                      |+||+++..++|||+|.|+..  + .++|+||||+++||||||||+.+    .+.|++|..+........+.+.|+++++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGsLI~~~~VLTAAHC~~~----~~~v~~G~~~~~~~~~~~~~~~v~~i~~   76 (224)
T 1cgh_A            1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGS----NINVTLGAHNIQRRENTQQHITARRAIR   76 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEESTTTTSCEEEEEEEETTEEEECGGGCCS----SEEEEESCSBTTSCCTTCEEEEEEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEEECCCCCeEEEEEEeeCCEEEEhHHhCCC----CCEEEEeecccCCCCCccEEEEEEEEEc
Confidence            689999999999999999763  3 48999999999999999999964    5789999887765555678899999999


Q ss_pred             CCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccc
Q psy10841        123 HSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHY  200 (286)
Q Consensus       123 hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~  200 (286)
                      ||+|+.....+|||||||++|+.|++.++|||||........+..++++|||.+. .+.....|++..+++++  +|+..
T Consensus        77 Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~-~~~~~~~l~~~~~~i~~~~~C~~~  155 (224)
T 1cgh_A           77 HPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVS-MRRGTDTLREVQLRVQRDRQCLRI  155 (224)
T ss_dssp             CTTCBTTTTBSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSS-SSCCCSBCEEEEEEBCCHHHHHHH
T ss_pred             CCCCCCCCCcCCEEEEEECCCCcCCCceEeeECCCCCCCCCCCCEEEEEECCcCC-CCCCCCcceEEEEEeeCHHHHHHH
Confidence            9999998889999999999999999999999999866555678899999999886 44556789999999988  58765


Q ss_pred             cc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        201 ED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       201 ~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      +.  ..+.+||++......+.|.|||||||++..       +|+||+|||. |.. ..|++||||++|++||++++++
T Consensus       156 ~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-------~l~Gi~S~g~-~~~-~~p~vyt~V~~~~~WI~~~~~s  224 (224)
T 1cgh_A          156 FGSYDPRRQICVGDRRERKAAFKGDSGGPLLCNN-------VAHGIVSYGK-SSG-VPPEVFTRVSSFLPWIRTTMRS  224 (224)
T ss_dssp             CTTCCTTTEEEECCTTSCCBCCTTCTTCEEEETT-------EEEEEEEECC-TTC-CSCEEEEEGGGGHHHHHHHHHC
T ss_pred             hCcCCCcceEeeccCCCCCeEeeCCCccceEEcc-------EEEEEEEEEC-CCC-CCCeEEEEHHHhHHHHHHHhhC
Confidence            53  234599998655567899999999999832       6999999998 433 5699999999999999998863

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=9.2e-51  Score=338.98  Aligned_cols=216  Identities=31%  Similarity=0.676  Sum_probs=183.7

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|+|+.++.++|+||||+++||||||||+.    ..+.|++|..+........+.+.|.++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLI~~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~   76 (225)
T 1npm_A            1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKK----QKYSVRLGDHSLQSRDQPEQEIQVAQSIQHPC   76 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCC----SSCEEEESCSBTTC--CCCEEECEEEEEECTT
T ss_pred             CCCCEECCCCCcCcEEEEeeCCceEEEEEEECCCEEEEhHHcCC----CCceEEEeeeEcCCCCCCcEEEEEEEEEECCC
Confidence            68999999999999999998888999999999999999999985    34678999887765555678899999999999


Q ss_pred             C-CC--CCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccC-CCCCCCccceeEeeeecc--cccc
Q psy10841        126 F-KR--AEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVF-EHGPDPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       126 y-~~--~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~-~~~~~~~~l~~~~~~~~~--~c~~  199 (286)
                      | +.  ....+|||||||++|+.|++.++|||||...  ...++.++++|||.+. ..+..+..|+++.+++++  +|+.
T Consensus        77 y~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~--~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~  154 (225)
T 1npm_A           77 YNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLC--PKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCER  154 (225)
T ss_dssp             CCSSCTTCCTTCCEEEEESSCCCCSSSSCCCEECSSC--CCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEECCHHHHHH
T ss_pred             CCCCCccCccccEEEEeeCCcccCCCceeceECCCCC--CCCCCEEEEEeCCcccCCCCCCCccceEeEEeeecHHHhhH
Confidence            9 55  5678999999999999999999999998743  4567899999999874 344557789999999988  5876


Q ss_pred             ccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEec-CCCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        200 YED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       200 ~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~-~~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                      .+.  ..+.+||++... ..+.|.|||||||++..       +|+||+||+ ..|...+.|++||||++|++||+++++
T Consensus       155 ~~~~~~~~~~~Ca~~~~-~~~~C~GDSGgPL~~~~-------~l~GI~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~  225 (225)
T 1npm_A          155 AYPGKITEGMVCAGSSN-GADTCQGDSGGPLVCDG-------MLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             HSTTTCCTTEEEEECTT-CCBCCTTCTTCEEEETT-------EEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             HhCCCCCCCEEeecCCC-CCeecCCCCCchheECC-------EEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            553  567899998633 67899999999999732       599999999 579877789999999999999999874

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=100.00  E-value=6.4e-51  Score=366.68  Aligned_cols=242  Identities=31%  Similarity=0.612  Sum_probs=199.8

Q ss_pred             CCCCCccCCCceecCeeCCCCccceEEEEeeC--C--eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCC-
Q psy10841         35 MAGNPILGSGRVVGGKKAELGAWPWLIALYRD--G--FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFS-  109 (286)
Q Consensus        35 ~~~~~~~~~~~i~~g~~a~~~~~Pw~v~i~~~--~--~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~-  109 (286)
                      .||..  ...||+||++|..++|||+|.|.+.  +  .++|+||||+++||||||||+.+.....+.|++|.++..... 
T Consensus       110 ~CG~~--~~~rIvgG~~a~~~e~Pw~v~L~~~~~g~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~V~lG~~~~~~~~~  187 (408)
T 2xxl_A          110 DCGNF--LSQRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVHGLQNDLYEIRLGEHRISTEED  187 (408)
T ss_dssp             CCSCC--CCCCCCSSCBCCTTSSTTEEEEEEECSSSEEEEEEEEEEETTEEEECGGGTTTCTTTEEEEEESCSBTTCSCC
T ss_pred             ccCCC--CCCceECCEECCCCCCCcEEEEEeecCCceeEEEEEEEEECCEEEEcHHhcCCCCCceEEEEeeeeECCCccc
Confidence            67732  3579999999999999999999752  2  689999999999999999999876667889999988765432 


Q ss_pred             -----------CCceEEeeeEEEECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCC---CCCCCCceEEEEecc
Q psy10841        110 -----------PTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE---TPEPYSTCTAVGWGA  175 (286)
Q Consensus       110 -----------~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~---~~~~~~~~~~~Gwg~  175 (286)
                                 ...+.+.|+++++||+|+.....||||||||++++.|+++++|||||....   ....+..++++|||.
T Consensus       188 ~~~~~~~~~c~~~~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~~v~~~~~V~PICLp~~~~~~~~~~~~~~~~v~GWG~  267 (408)
T 2xxl_A          188 CRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGT  267 (408)
T ss_dssp             EEEETTEEEECCCCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCBTTBCCCBCCCSHHHHHHTTTCSEEEEEECCC
T ss_pred             hhhcccccccCCceEEEeEEEEEeCCCCCccccccceEEEEECCccccccCccccCCCCcccccccccCCCEEEEEEeCc
Confidence                       235678899999999999988899999999999999999999999997432   135678899999998


Q ss_pred             cCCCCCCCccceeEeeeecc--ccccccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecC---CCCCcEEEEEEEEec
Q psy10841        176 VFEHGPDPDHMREVQVPILP--ACKHYED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVP---GSQGRWYVAGVVSHG  248 (286)
Q Consensus       176 ~~~~~~~~~~l~~~~~~~~~--~c~~~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~---~~~~~~~lvGI~s~~  248 (286)
                      +.... .+..|+++.+++++  +|+..+.  ....+||++.. ...+.|.|||||||++...   ..+++|+|+||+|||
T Consensus       268 t~~~~-~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~iCAg~~-~g~d~C~GDSGGPL~~~~~~~~~~~~~~~l~GIvS~G  345 (408)
T 2xxl_A          268 TENGS-SSDVLLQANVPLQPRSACSQAYRRAVPLSQLCVGGG-DLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQG  345 (408)
T ss_dssp             BTTBC-SCSBCEEEEEEEECHHHHHHHHTSCCCTTEEEECCS-CSSSGGGSCTTCEEEEEECCTTCSSCEEEEEEEEEEC
T ss_pred             CCCCC-CCchheEeeeeecCHHHHHHHhcccCCCceEeecCC-CCCccCCCcccChhhcCccceEEECCEEEEEEEEEEC
Confidence            85443 57889999999988  5876553  34589999863 3678999999999954321   125689999999999


Q ss_pred             -CCCCCCCCCeeEEeCCCcHHHHHhhhcccccc
Q psy10841        249 -EGCARPNEPGVYTRVSQFVPWLMSNSERAKVE  280 (286)
Q Consensus       249 -~~c~~~~~p~v~t~v~~~~~WI~~~~~~~~~~  280 (286)
                       ..|+..+.|+|||||++|++||+++++.....
T Consensus       346 ~~~Cg~~~~PgVYTrVs~y~~WI~~~i~~~~~~  378 (408)
T 2xxl_A          346 VVTCGQISLPGLYTNVGEYVQWITDTMASNGLL  378 (408)
T ss_dssp             CCCTTSCCCCEEEEEGGGGHHHHHHHHHHHCSS
T ss_pred             CCCCCCCCCCeEEEEHHHHHHHHHHHHhhcCcc
Confidence             68998788999999999999999999875543

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=100.00  E-value=3.3e-51  Score=344.30  Aligned_cols=219  Identities=31%  Similarity=0.590  Sum_probs=188.3

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++|..++|||+|+|+.++.++|+||||+++||||||||+.    ..+.|++|..+........+.+.|.++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~   76 (237)
T 1gvz_A            1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMS----DDYQIWLGRHNLSKDEDTAQFHQVSDSFLDPQ   76 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCC----SSCEEEESCSBTTSCCTTCEEECEEEEEECTT
T ss_pred             CCCCEECCCCCCCeEEEEeeCCceEEEeEEeeCCEEEEcHHhCC----CCCeEEEeecccccCCCCceEEEeeeEecCCc
Confidence            68999999999999999998888999999999999999999995    35689999888765555678899999999999


Q ss_pred             CCCCCC-----------CCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccC-CCCCCCccceeEeeee
Q psy10841        126 FKRAEM-----------TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVF-EHGPDPDHMREVQVPI  193 (286)
Q Consensus       126 y~~~~~-----------~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~-~~~~~~~~l~~~~~~~  193 (286)
                      |+....           .+|||||||++|+.|++.++|||||...  ...+..++++|||.+. ..+..+..|+++.+++
T Consensus        77 y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~--~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~  154 (237)
T 1gvz_A           77 FDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQE--PKLGSTCYTSGWGLISTFTNRGSGTLQCVELRL  154 (237)
T ss_dssp             SCGGGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSSC--CCTTCEEEEEEEECSCTTTCSEEEEEEEEEEEE
T ss_pred             cCcccccccccccccccCCceEEEEeCCCcccCCcEeeeECCCCC--CCCCCEEEEECCCcccCCCCCCCCccEEEEEeE
Confidence            987665           8999999999999999999999999743  4567899999999874 3344567899999998


Q ss_pred             cc--ccccccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCCCCCCCeeEEeCCCcHH
Q psy10841        194 LP--ACKHYED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVP  268 (286)
Q Consensus       194 ~~--~c~~~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~~~~~p~v~t~v~~~~~  268 (286)
                      ++  +|+..+.  ..+.+||++......+.|.|||||||++..       +|+||+|||. .|...+.|++||||++|++
T Consensus       155 ~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-------~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~  227 (237)
T 1gvz_A          155 QSNEKCARAYPEKMTEFVLCATHRDDSGSICLGDSGGALICDG-------VFQGITSWGYSECADFNDNFVFTKVMPHKK  227 (237)
T ss_dssp             ECGGGGCSSCGGGCCTTEEEEECSSTTCEECGGGTTCEEEETT-------EEEEEECCCSSSCEETTTSCCEEESGGGHH
T ss_pred             eChhHhhhhhhhcCCCceEEEeeCCCCCccCCCCccCcEeeCC-------EEEEEEEeCCCCCCCCCCCcEEEEHHHHHH
Confidence            87  5876553  567899998655567899999999999832       5999999998 8986678999999999999


Q ss_pred             HHHhhhccc
Q psy10841        269 WLMSNSERA  277 (286)
Q Consensus       269 WI~~~~~~~  277 (286)
                      ||++++++.
T Consensus       228 WI~~~~~~~  236 (237)
T 1gvz_A          228 WIKETIEKN  236 (237)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            999998764

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=100.00  E-value=7.3e-51  Score=341.46  Aligned_cols=223  Identities=24%  Similarity=0.408  Sum_probs=196.7

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|+|+..+.++|+||||+++||||||||+.......+.|++|..+...   ..+.+.+.++++| +
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~---~~~~~~v~~i~~h-~   76 (235)
T 3h7t_A            1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGTKPSDISIHYGSSYRTT---KGTSVMAKKIYIV-R   76 (235)
T ss_dssp             CBTCEECCTTTSTTEEEEEETTSCCEEEEESSSSEEEECHHHHTTCCGGGEEEEESCSBSSS---SSEEEEEEEEEEC-S
T ss_pred             CCCCEECCCCCCCcEEEEecCCCceEeEEEeeCCEEEECHHHCCCCCCCeeEEEcCcccccc---CCceeeeeeEEee-e
Confidence            68999999999999999998888999999999999999999998777788999999877653   4588899999999 9


Q ss_pred             CCCCCCCCceEEEEecCccccCC-ceeeeecCCCCCCCCCCCceEEEEecccCCCC-CCCccceeEeeeecc--cccccc
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNR-YVRPICLPDVTETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPILP--ACKHYE  201 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~-~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~--~c~~~~  201 (286)
                      |+.....+|||||||++|+.|++ .++|||||........+..++++|||.+...+ .....|+++.+++++  .|+..+
T Consensus        77 y~~~~~~~DiAll~L~~~v~~~~~~v~pi~Lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~  156 (235)
T 3h7t_A           77 YHPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQY  156 (235)
T ss_dssp             CBTTTTBTCCEEEEESSCCCCCSSSCCCCBCCCTTCCCCTTCEEEEEECCCSSTTCCCCCSBCEEEEEEEECHHHHHHHH
T ss_pred             cCCCCCCCCeEEEEeccccccCCccccceecCccccCCCCCCeEEEEecCCCCCCCCchhHHHhhCCCceeCHHHHHHHh
Confidence            99998999999999999999999 99999999876556788999999999886655 567889999999998  587654


Q ss_pred             c-------CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhh
Q psy10841        202 D-------RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNS  274 (286)
Q Consensus       202 ~-------~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~  274 (286)
                      .       ..+.+||++......+.|.|||||||++..       .|+||+||+..|.. +.|++||||++|++||++++
T Consensus       157 ~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-------~l~Gi~S~g~~C~~-~~p~vyt~v~~~~~WI~~~i  228 (235)
T 3h7t_A          157 KQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQNG-------TLVGVASYISSMPS-EFPSVFLRVGYYVLDIKDII  228 (235)
T ss_dssp             HTTTCGGGCSTTEEEECBTTTTBBCCTTCTTCEEEETT-------EEEEEECCCTTCCT-TSCEEEEEGGGGHHHHHHHH
T ss_pred             hhcccCccccCCeEecCCCCCCCccccCCCCCceeeCC-------eEEEEEEecCCCCC-CCCceEEEHHHHHHHHHHHH
Confidence            2       567899998766678999999999999833       29999999999987 78999999999999999999


Q ss_pred             cccccc
Q psy10841        275 ERAKVE  280 (286)
Q Consensus       275 ~~~~~~  280 (286)
                      +....+
T Consensus       229 ~~~~~p  234 (235)
T 3h7t_A          229 SGKVKP  234 (235)
T ss_dssp             TTCSCC
T ss_pred             hCCccC
Confidence            887654

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=100.00  E-value=2.4e-50  Score=336.62  Aligned_cols=218  Identities=29%  Similarity=0.546  Sum_probs=186.4

Q ss_pred             eecCeeCCCCccceEEEEeeCC----eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRDG----FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIV  121 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~  121 (286)
                      |+||+++..++|||+|.|+...    .++|+||||+++||||||||+.    ..+.|++|..+........+.+.|.+++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAhC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~~~   76 (226)
T 4ag1_A            1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAG----RSITVTLGAHNITEEEDTWQKLEVIKQF   76 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEEECSSSSCEEEEEEEEETTEEEECGGGCC----SEEEEEESCSBTTSCCTTCEEEEEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEEEcCCCcccEEEEEEEeCCEEEECcccCC----CCeEEEeCCcccCCCCCcceEEEEEEEE
Confidence            6899999999999999997532    6889999999999999999984    4678999988877656666889999999


Q ss_pred             ECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccc
Q psy10841        122 MHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       122 ~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~  199 (286)
                      +||+|+.....+|||||||++|+.|+..++|+|||........+..++++|||.+.........|++..+++++  .|+.
T Consensus        77 ~hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~  156 (226)
T 4ag1_A           77 RHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSH  156 (226)
T ss_dssp             ECTTCCTTTCTTCCEEEEESSCCCCCSSSCCCCCC-----CCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEECGGGGTT
T ss_pred             eCCCCCCCCCcCcEEEEEECCCCccCCceeccccCCcccCCCCCCEEEEEECCCCCCCCCCCCEeEEEEEEEcChHHccc
Confidence            99999999999999999999999999999999999866656778999999999987666667889999999988  5874


Q ss_pred             ccc-CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        200 YED-RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       200 ~~~-~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      ... ..+.+||++.+....+.|.|||||||++..       +|+||+|||..|...  |++||||++|++||++++++
T Consensus       157 ~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-------~l~Gi~S~g~~c~~~--p~vyt~v~~~~~WI~~~i~~  225 (226)
T 4ag1_A          157 FRDFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAG-------VAQGIVSYGRSDAKP--PAVFTRISHYRPWINQILQA  225 (226)
T ss_dssp             STTCCTTTEEEESCTTSCCBCCTTCTTCEEEETT-------EEEEEEEECBTTCCS--CEEEEEHHHHHHHHHHHHHH
T ss_pred             ccCcCccceEeeccCCCCCcCccCCCCCceEEcC-------EEEEEEEECCCCCCC--CCEEEEhHHHHHHHHHHHhc
Confidence            332 367799998766678999999999999833       699999999988764  99999999999999999875

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=2.6e-50  Score=338.46  Aligned_cols=216  Identities=36%  Similarity=0.691  Sum_probs=185.3

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++|..++|||+|+|+. + ++|+||||+++||||||||+.    ..+.|++|..+........+.+.|+++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~-~-~~CgGsLIs~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~   74 (235)
T 1ton_A            1 IVGGYKCEKNSQPWQVAVIN-E-YLCGGVLIDPSWVITAAHCYS----NNYQVLLGRNNLFKDEPFAQRRLVRQSFRHPD   74 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEES-S-SEEEEEEEETTEEEECGGGCC----SCCEEEESCSBTTSCCTTCEEECEEEEEECTT
T ss_pred             CCCCEECCCCCcCcEEEEcc-C-CeEEEEEecCCEEEEcHHhCC----CCcEEEeCcccccCCCCcceEEEEEEEEeCCC
Confidence            68999999999999999986 3 899999999999999999994    35679999887665444578889999999999


Q ss_pred             CCC-----------CCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCC-CCCCccceeEeeee
Q psy10841        126 FKR-----------AEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEH-GPDPDHMREVQVPI  193 (286)
Q Consensus       126 y~~-----------~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~~~  193 (286)
                      |+.           ....+|||||||++|+.|++.++|||||...  ...+..++++|||.+... ...+..|+++.+++
T Consensus        75 y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~--~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~  152 (235)
T 1ton_A           75 YIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKE--PKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHL  152 (235)
T ss_dssp             CCCC--------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSC--CCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEE
T ss_pred             CcccccccccccccCCCcCCEEEEEcCCccccCCcceeeeCCCCC--CCCCCEEEEEecCCCCCCCCccCccceEEEEEE
Confidence            987           6678999999999999999999999999743  456789999999988644 44567899999998


Q ss_pred             cc--ccccccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEec-CCCCCCCCCeeEEeCCCcHH
Q psy10841        194 LP--ACKHYED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVP  268 (286)
Q Consensus       194 ~~--~c~~~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~-~~c~~~~~p~v~t~v~~~~~  268 (286)
                      ++  +|+..+.  ..+.+||++......+.|.|||||||++..       +|+||+||+ ..|...+.|++||||++|++
T Consensus       153 ~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~  225 (235)
T 1ton_A          153 LSNEKCIETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPLICDG-------VLQGITSGGATPCAKPKTPAIYAKLIKFTS  225 (235)
T ss_dssp             ECGGGCGGGGSTTGGGGEEEEECTTCSCBCCTTCTTCEEEETT-------EEEEEECCCCSSCSCTTCCEEEEEGGGGHH
T ss_pred             eCHHHHHHHhcCcCCCCeEeeccCCCCCcCCCCCCccccEECC-------EEEEEEeeCCCCCCCCCCCeEEEEHHHHHH
Confidence            87  5877653  467899998655667899999999999832       699999999 57987788999999999999


Q ss_pred             HHHhhhcc
Q psy10841        269 WLMSNSER  276 (286)
Q Consensus       269 WI~~~~~~  276 (286)
                      ||++++++
T Consensus       226 WI~~~~~~  233 (235)
T 1ton_A          226 WIKKVMKE  233 (235)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcc
Confidence            99999875

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=100.00  E-value=1.1e-50  Score=341.73  Aligned_cols=223  Identities=31%  Similarity=0.684  Sum_probs=181.7

Q ss_pred             cCeeCCCCccceEEEEee--CC--eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCc--eEEeeeEEE
Q psy10841         48 GGKKAELGAWPWLIALYR--DG--FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTE--QVRPVSRIV  121 (286)
Q Consensus        48 ~g~~a~~~~~Pw~v~i~~--~~--~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~--~~~~v~~~~  121 (286)
                      ||++|..++|||+|+|+.  ++  .++|+||||+++||||||||+...  ..+.|++|..+........  +.+.|++++
T Consensus         1 gG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAhC~~~~--~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~   78 (240)
T 1fon_A            1 NGEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTS--RTYQVVLGEYDRSVLEGSEQVIPINAGDLF   78 (240)
T ss_dssp             --------CEEEEEEEEEEETTEEEEEECCEEEETTEEEECGGGCCTT--SCEEEEEEEEETTEEEEEEEEEEECTTSEE
T ss_pred             CCccCCcCCcccEEEEEEecCCcEeeEEEEEEeeCCEEEECHHHCCCC--CceEEEeeeeeccccCCCceeEeeeeeEEE
Confidence            689999999999999975  44  489999999999999999999753  5678999988765432233  677889999


Q ss_pred             ECCCCCCCCCC--CceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cc
Q psy10841        122 MHSMFKRAEMT--NDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC  197 (286)
Q Consensus       122 ~hp~y~~~~~~--~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c  197 (286)
                      +||+|+.....  +|||||||++|+.|++.++|||||........+..++++|||.+...+..+..|+++.+++++  +|
T Consensus        79 ~Hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C  158 (240)
T 1fon_A           79 VHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHC  158 (240)
T ss_dssp             ECTTCCTTCGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTCCCCTTCCCEEEECTTCCCSSSCCSBCEEEECCEECHHHH
T ss_pred             ECCCCcCCCccCCCCEEEEEecCccccCCcccccCCCCcccCCCCCCeEEEEEEeEcCCCCCCChhheEEEEeeeCHHHh
Confidence            99999988777  999999999999999999999999865555677899999999886666667889999999988  58


Q ss_pred             cccc----cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC--CCCCCCCCeeEEeCCCcHHHHH
Q psy10841        198 KHYE----DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWLM  271 (286)
Q Consensus       198 ~~~~----~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~--~c~~~~~p~v~t~v~~~~~WI~  271 (286)
                      +..+    ...+.+||++. . ..+.|.|||||||++...  +++|+|+||+|++.  .|...+.|++||||+.|++||+
T Consensus       159 ~~~~~~~~~~~~~~~Ca~~-~-~~~~C~GDsGgPL~~~~~--~~~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~  234 (240)
T 1fon_A          159 SQWDWWGITVKKTMVCAGG-D-TRSGCNGDSGGPLNCPAA--DGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWID  234 (240)
T ss_dssp             TSTTTTGGGCCTTEEEECC-S-SSCSTTSCTTCEEEEECS--SSCEEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHH
T ss_pred             ccceecCCccccceEeecC-C-CCcccCCCCCCeEEeEcC--CCCEEEEEEEEEcCCCCCCCCCCCcEEEEhHHHHHHHH
Confidence            7642    35678999984 3 378999999999998653  67899999999996  7987678999999999999999


Q ss_pred             hhhcc
Q psy10841        272 SNSER  276 (286)
Q Consensus       272 ~~~~~  276 (286)
                      +++++
T Consensus       235 ~~~~~  239 (240)
T 1fon_A          235 ETIAS  239 (240)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99875

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=3.4e-51  Score=344.89  Aligned_cols=220  Identities=37%  Similarity=0.726  Sum_probs=162.6

Q ss_pred             CceecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEEC
Q psy10841         44 GRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMH  123 (286)
Q Consensus        44 ~~i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~h  123 (286)
                      .||+||+++..++|||+|+|+..+.++|+||||+++||||||||+.    ..+.|++|..+........+.+.|+++++|
T Consensus         2 arIvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~----~~~~v~~G~~~~~~~~~~~~~~~v~~~~~H   77 (240)
T 1sgf_A            2 APPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYN----DKYQVWLGKNNFLEDEPSDQHRLVSKAIPH   77 (240)
T ss_dssp             -----------CCCTTEEEEECTTSCCEEEEECSSSEEEECGGGCC----SCCEEEECC----C-CTTCEEEEEEEEEEC
T ss_pred             CcccCCeECCCCCcCCEEEEEeCCCeEEEEEEecCCEEEECHHhCC----CCceEEeCCcccccCCCCceEEEEEEEEcC
Confidence            5899999999999999999965467899999999999999999996    346788998776554456788999999999


Q ss_pred             CCCCCC-----------CCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCC-CCCCccceeEee
Q psy10841        124 SMFKRA-----------EMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEH-GPDPDHMREVQV  191 (286)
Q Consensus       124 p~y~~~-----------~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~  191 (286)
                      |+|+..           ...+|||||||++|+.|++.++|||||...  ...+..++++|||.+... ......|+++.+
T Consensus        78 p~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~--~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~  155 (240)
T 1sgf_A           78 PDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEE--PKLGSTCLASGWGSTTPIKFKYPDDLQCVNL  155 (240)
T ss_dssp             TTSCGGGC----CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCCSC--CCTTCEEEEC-------C---------CEEE
T ss_pred             CCCcccccccccccccCCCCCceEEEEeCCcCcCCCcccccCCCCCC--CCCCCEEEEEecCCCCCCCCCCCccccEEee
Confidence            999865           678999999999999999999999999743  456789999999987543 345678899999


Q ss_pred             eecc--ccccccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEec-CCCCCCCCCeeEEeCCCc
Q psy10841        192 PILP--ACKHYED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQF  266 (286)
Q Consensus       192 ~~~~--~c~~~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~-~~c~~~~~p~v~t~v~~~  266 (286)
                      ++++  +|+..+.  ..+.+||++......+.|.|||||||++..       +|+||+||| ..|...+.|++||||++|
T Consensus       156 ~~~~~~~C~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-------~l~GI~S~g~~~C~~~~~p~vyt~V~~~  228 (240)
T 1sgf_A          156 KLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDG-------ILQGITSWGPEPCGEPTEPSVYTKLIKF  228 (240)
T ss_dssp             EEECTHHHHTTCSSBCCTTEEEEEECSSSEEECCCCTTCEEEETT-------EEEEEECCCCSSCCCSSCCEEEEESGGG
T ss_pred             eEeCHHHhhhhhCCCcCCCeEeEccCCCCCCCCCCCCcCcEEEcc-------EEEEEEEECCCCCCCCCCCeEEEeHHHH
Confidence            9887  5876543  567899998755667899999999999832       699999999 579877789999999999


Q ss_pred             HHHHHhhhcc
Q psy10841        267 VPWLMSNSER  276 (286)
Q Consensus       267 ~~WI~~~~~~  276 (286)
                      ++||++++++
T Consensus       229 ~~WI~~~~~~  238 (240)
T 1sgf_A          229 SSWIRETMAN  238 (240)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHhc
Confidence            9999999875

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=100.00  E-value=6.4e-50  Score=333.87  Aligned_cols=217  Identities=29%  Similarity=0.510  Sum_probs=186.5

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCc-eEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTE-QVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~-~~~~v~~~~~hp  124 (286)
                      |+||+++..++|||+|+|+..+.++|+||||+++||||||||+.+.....+.|++|.++........ +.+.|++++.| 
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~h-   79 (225)
T 1a7s_A            1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSEN-   79 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGC----CCSEEEEESCSSTTSCCTTTCEEEEEEEEECS-
T ss_pred             CCCCEECCCCCCCcEEEEecCCCcEEEEEEeeCCEEEEchhccCCCCCCceEEEEeeeECCCCCCcceeEEeEEEEecc-
Confidence            6899999999999999999888899999999999999999999876667789999988765543333 78899999999 


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYED  202 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~~  202 (286)
                      +|+.....+|||||||++|+.|++.++|||||........+..++++|||.+...+.....+++..+.+++  +|+.   
T Consensus        80 ~y~~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~---  156 (225)
T 1a7s_A           80 GYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP---  156 (225)
T ss_dssp             SCBTTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSTTCCCCSSCEEEEEEECCGGGSCT---
T ss_pred             cccCCCCcCCEEEEEcCCcccCCCceeEEEcCCCcCCCCCCCEEEEEeCCcCCCCCCcccccceeeeEECCHHHhcc---
Confidence            99988889999999999999999999999999866555678899999999987666677889999999887  5764   


Q ss_pred             CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEec-CCCCCCCCCeeEEeCCCcHHHHHhhhcccc
Q psy10841        203 RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPWLMSNSERAK  278 (286)
Q Consensus       203 ~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~-~~c~~~~~p~v~t~v~~~~~WI~~~~~~~~  278 (286)
                         .++|++......+.|.|||||||++..       +|+||+||+ ..|...  |++||||+.|++||++++++..
T Consensus       157 ---~~~Ca~~~~~~~~~C~GDSGgPl~~~g-------~l~Gi~S~g~~~C~~~--p~vyt~V~~~~~WI~~~~~~~~  221 (225)
T 1a7s_A          157 ---NNVCTGVLTRRGGICNGDGGTPLVCEG-------LAHGVASFSLGPCGRG--PDFFTRVALFRDWIDGVLNNPG  221 (225)
T ss_dssp             ---TEEEEECSSSSCBCCTTCTTCEEEETT-------EEEEEEEEECSSTTSS--CEEEEEGGGGHHHHHHHHHSCS
T ss_pred             ---CceEEeccCCCCCcccCCCcchheeCC-------EEEEEEEEccCCcCCC--CcEEEEhHHhHHHHHHHhcCCC
Confidence               799998755567899999999999842       799999999 578763  9999999999999999998754

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=3.1e-50  Score=335.46  Aligned_cols=217  Identities=31%  Similarity=0.555  Sum_probs=188.6

Q ss_pred             eecCeeCCCCccceEEEEeeCC----eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRDG----FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIV  121 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~----~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~  121 (286)
                      |+||+++..++|||+|+|+...    .++|+||||+++||||||||+.    ..+.|++|..+........+.+.|.+++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAhC~~----~~~~v~~g~~~~~~~~~~~~~~~v~~~~   76 (224)
T 3rp2_A            1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKG----REITVILGAHDVRKRESTQQKIKVEKQI   76 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEECTTSCEEEEEEEESSSSEEEECGGGCC----SEEEEEESCSBTTSCCTTCEEEEEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEEecCCCcEEEEEeEEeeCCEEEEchhcCC----CCcEEEEeccccCcCCCCcEEEEEEEEE
Confidence            6899999999999999997543    6899999999999999999983    4678999988876666677889999999


Q ss_pred             ECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccc
Q psy10841        122 MHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       122 ~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~  199 (286)
                      +||+|+.....+|||||||++|+.|++.++|||||........+..++++|||.+...+.....+++..+.+++  .|+.
T Consensus        77 ~hp~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~  156 (224)
T 3rp2_A           77 IHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVD  156 (224)
T ss_dssp             ECTTCCSSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSEEETTEEECSBCEEEEEEEECGGGTTT
T ss_pred             ECCCccCCCCCccEEEEEcCCCcccCCcccceecCCcccCCCCCCEEEEEeCCCCCCCCCCCceeeEeeeeecChHHhcc
Confidence            99999999889999999999999999999999999876666778999999999886655566789999999988  5875


Q ss_pred             cc-cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        200 YE-DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       200 ~~-~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                      .. .....++|++......+.|.|||||||++..       +|+||+|||..|...  |++||||++|++||+++|+
T Consensus       157 ~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~-------~l~Gi~S~g~~c~~~--p~vyt~v~~y~~WI~~~i~  224 (224)
T 3rp2_A          157 YRYYEYKFQVCVGSPTTLRAAFMGDSGGPLLCAG-------VAHGIVSYGHPDAKP--PAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             TTCCCTTTEEEECCTTSCCBCCTTTTTCEEEETT-------EEEEEEEECCTTCCS--CEEEEEHHHHHHHHHHHHC
T ss_pred             ccccCcCCEEEecCCCCCCeeccCCCCCeEEEcc-------eeeEEEEECCCCCCC--CcEEEEHHHhHHHHHHHhC
Confidence            22 2467799998766668999999999999843       699999999988763  9999999999999999874

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=100.00  E-value=4.1e-50  Score=337.03  Aligned_cols=222  Identities=30%  Similarity=0.591  Sum_probs=184.1

Q ss_pred             eecCeeCCCCccceEEEEeeC-CeEEeEEEEeeCCEEEeccCCcCCCC--CceEEEEEeeeecccC--CCCceEEeeeEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRD-GFFHCGGVVLDESWVMTAAHCVDGFE--KHYFEVYAGMLRRFSF--SPTEQVRPVSRI  120 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTaAhC~~~~~--~~~~~v~~g~~~~~~~--~~~~~~~~v~~~  120 (286)
                      |+||+   .++|||+|+|+.. +.++|+||||+++||||||||+....  ...+.|++|..+....  ....+.+.|.++
T Consensus         1 IvgG~---~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i   77 (234)
T 2asu_B            1 VVGGH---PGNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKM   77 (234)
T ss_dssp             CBSCE---ECCCTTEEEEECTTSCEEEEEEEEETTEEEEEGGGSSCTTCCCTTCEEEESCSBSSCCTTCTTCEEEEEEEE
T ss_pred             CCCcc---cCCCcceEEeeccCCCEEEEEEEEeCCEEEECHHHcCCCCCCcccEEEEEeeeeccCCCCCCceEEEEEEEE
Confidence            67888   5789999999865 57899999999999999999996532  4567899998776543  345678899999


Q ss_pred             EECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccc
Q psy10841        121 VMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK  198 (286)
Q Consensus       121 ~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~  198 (286)
                      +.||.      .+|||||||++|+.|+++++|||||........+..++++|||.+...+ ....|+++.+.+++  +|+
T Consensus        78 ~~hp~------~~DiALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~L~~~~~~~~~~~~C~  150 (234)
T 2asu_B           78 VCGPS------GSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTG-NDTVLNVALLNVISNQECN  150 (234)
T ss_dssp             EECST------TCCEEEEEESSCCCCSSSSCCCBCCCTTCCCCTTCEEEEEESSCCTTSS-CTTBCEEEEEEEECHHHHH
T ss_pred             ecCCC------CCCeEEEEeCCcCcCCCcEeccCCCCccccCCCCCEEEEEeCCccCCCC-CCccceEEEeeEEcHHHcc
Confidence            99996      5899999999999999999999999865555678899999999885443 46789999999988  587


Q ss_pred             ccc--cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        199 HYE--DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       199 ~~~--~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      ..+  ...+.+||++......+.|.|||||||++..   +++|+|+||+||+..|...+.|++||||++|++||++++++
T Consensus       151 ~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~---~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~  227 (234)
T 2asu_B          151 IKHRGRVRESEMCTEGLLAPVGACEGDYGGPLACFT---HNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRL  227 (234)
T ss_dssp             HHTTTCCCTTEEEECCCSSCCBCCTTCTTCEEEEEE---TTEEEEEEEECCCSSSSCTTCCEEEEEGGGSHHHHHHHC--
T ss_pred             cccCCccCcceEeecCCCCCCeeccCCCCCceEEEE---CCeEEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHhhc
Confidence            655  3567899998655567899999999999976   67999999999999998778899999999999999999987


Q ss_pred             cccc
Q psy10841        277 AKVE  280 (286)
Q Consensus       277 ~~~~  280 (286)
                      ...+
T Consensus       228 ~~~~  231 (234)
T 2asu_B          228 GHHH  231 (234)
T ss_dssp             ----
T ss_pred             cccc
Confidence            6543

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=100.00  E-value=2.7e-50  Score=336.36  Aligned_cols=218  Identities=31%  Similarity=0.645  Sum_probs=187.4

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++|..++|||+|+|+.++.++|+||||+++||||||||+.+  ...+.|++|..+........+.+.|.++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~--~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~   78 (226)
T 1azz_A            1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDG--AGFVDVVLGAHNIREDEATQVTIQSTDFTVHEN   78 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTTEEEEEEEEETTEEEECHHHHTT--CSCEEEEESCSBSSSCCTTCEEEEECCEEECTT
T ss_pred             CCCCEECCCCCcCCEEEEEECCcEEEEEEEecCCEEEEhHHhcCC--CCceEEEEcceEcCCCCCccEEEEEEEEEECCC
Confidence            689999999999999999887789999999999999999999965  456789999887765544567889999999999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCC-CCCccceeEeeeecc--ccccccc
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPILP--ACKHYED  202 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~--~c~~~~~  202 (286)
                      |+.....+|||||||++|+.|++.++|||||...  ...+..++++|||.+...+ ..+..|+++.+++++  +|+..+.
T Consensus        79 y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~--~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~  156 (226)
T 1azz_A           79 YNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTD--VGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYG  156 (226)
T ss_dssp             CBTTTTBSCCEEEECSSCCCCCSSSCCCBCCSSC--CCTTCEEEEEESSCSSTTCSSSCSBCEECCEEEECHHHHHHHHS
T ss_pred             CCCCCCCCceEEEEECCccccCCCcccccCCCCC--CCCCCEEEEEeCCccCCCCCCCCchhEEeeEEEEChhHhhhhhC
Confidence            9998889999999999999999999999999754  3567899999999876533 456789999999888  5876653


Q ss_pred             -CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC--CCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        203 -RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       203 -~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~--~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                       ..+.+||++. ....+.|.|||||||++.     +  +|+||+|||.  .|.. +.|++||||++|++||+++++.
T Consensus       157 ~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~-----~--~l~Gi~S~g~~~~C~~-~~p~vyt~V~~~~~WI~~~~~~  224 (226)
T 1azz_A          157 IVTDGNICIDS-TGGKGTCNGDSGGPLNYN-----G--LTYGITSFGAAAGCEA-GYPDAFTRVTYFLDWIQTQTGI  224 (226)
T ss_dssp             CCCTTEEEECC-TTTCBCCTTCTTCEEEET-----T--EEEEEEEEEETTCTTS-CCCEEEEESGGGHHHHHHHHCC
T ss_pred             cCCCceEeecC-CCCCccCCCCCCcceEEC-----C--EEEEEEEEECCCCCCC-CCCCEEEEHHHHHHHHHHHhCC
Confidence             5678999975 456789999999999952     1  6999999997  6764 7899999999999999999865

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=1.2e-50  Score=341.95  Aligned_cols=224  Identities=30%  Similarity=0.595  Sum_probs=183.6

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCC-----CCceEEEEEeeeecccCCCCceEEeeeEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGF-----EKHYFEVYAGMLRRFSFSPTEQVRPVSRI  120 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~-----~~~~~~v~~g~~~~~~~~~~~~~~~v~~~  120 (286)
                      |+||++|..++|||+|.|...  ++|+||||+++||||||||+...     ....+.|++|..+..... ..+.+.|+++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~--~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~~~~-~~~~~~v~~i   77 (242)
T 2qy0_B            1 IIGGQKAKMGNFPWQVFTNIH--GRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELM-KLGNHPIRRV   77 (242)
T ss_dssp             CBSCEECCTTSSTTEEEEESS--SEEEEEEETTTEEEECHHHHSCSSCCC----CCEEEESCSBHHHHH-HHCCCCEEEE
T ss_pred             CCCCEECCCCCCCcEEEEccC--CCEEEEEEeCCEEEEcHHhccccccccCCCceEEEEEeeccccccc-cccceeEEEE
Confidence            689999999999999999753  57999999999999999999643     234677899977653321 2346789999


Q ss_pred             EECCCCCCC---CCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--
Q psy10841        121 VMHSMFKRA---EMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--  195 (286)
Q Consensus       121 ~~hp~y~~~---~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--  195 (286)
                      ++||+|+..   ...+|||||||++|+.|+++++|||||........+..++++|||.+...  ....|+++.+++++  
T Consensus        78 ~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~--~~~~L~~~~~~~~~~~  155 (242)
T 2qy0_B           78 SVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEK--IAHDLRFVRLPVANPQ  155 (242)
T ss_dssp             EECTTCCTTCSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCCCSSS--CCSBCEEEEEEBCCHH
T ss_pred             EECCCCccCcCCCCCCcEEEEEECCCCcCCCCcceeecCCCccccCCCCeEEEEeeccCCCc--CCccceEEEEEEeCHH
Confidence            999999865   67899999999999999999999999975544456788999999987543  56789999999988  


Q ss_pred             cccccc-------cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHH
Q psy10841        196 ACKHYE-------DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVP  268 (286)
Q Consensus       196 ~c~~~~-------~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~  268 (286)
                      .|+..+       ...+.+||++......+.|.|||||||++.. +.+++|+|+||+|||..|..  .|++||||++|++
T Consensus       156 ~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~-~~~~~~~l~Gi~S~g~~C~~--~~~vyt~V~~y~~  232 (242)
T 2qy0_B          156 ACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRD-PNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVD  232 (242)
T ss_dssp             HHHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEEC-TTTCCEEEEEEEEECSSSSS--SCEEEEEGGGGHH
T ss_pred             HHHHHhccccccccCCCCEEeccCCCCCCccccCCCCCcEEEEE-CCCCeEEEEEEEEECCCcCC--CCcEEEEHHHHHH
Confidence            587643       2467899998654567899999999999853 24689999999999999985  4899999999999


Q ss_pred             HHHhhhccc
Q psy10841        269 WLMSNSERA  277 (286)
Q Consensus       269 WI~~~~~~~  277 (286)
                      ||+++++++
T Consensus       233 WI~~~~~~~  241 (242)
T 2qy0_B          233 WIKKEMEEE  241 (242)
T ss_dssp             HHHHHTTC-
T ss_pred             HHHHHhhcc
Confidence            999998753

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=100.00  E-value=4.5e-50  Score=341.41  Aligned_cols=231  Identities=32%  Similarity=0.709  Sum_probs=188.4

Q ss_pred             eecCeeCCCCccceEEEEeeC--CeEEeEEEEeeCCEEEeccCCcCC------CCCceEEEEEeeeecccCCCC-ceEEe
Q psy10841         46 VVGGKKAELGAWPWLIALYRD--GFFHCGGVVLDESWVMTAAHCVDG------FEKHYFEVYAGMLRRFSFSPT-EQVRP  116 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~--~~~~C~GtLIs~~~VLTaAhC~~~------~~~~~~~v~~g~~~~~~~~~~-~~~~~  116 (286)
                      |+||+++..++|||+|.|+..  +.++|+||||+++||||||||+..      .....+.|++|..+....... .+.+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~   80 (259)
T 3rm2_H            1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM   80 (259)
T ss_dssp             CBSCEECCTTSSTTEEEEEEETTEEEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEEE
T ss_pred             CCCCEECCCCCcCCEEEEEECCCCceEEEEEEEeCCEEEEcHHhCcccccccccCcccEEEEECcccccccccCcceeeE
Confidence            689999999999999999643  368999999999999999999952      234678899998876544333 34556


Q ss_pred             eeEEEECCCCC-CCCCCCceEEEEecCccccCCceeeeecCCCCC---CCCCCCceEEEEecccCCCC------CCCccc
Q psy10841        117 VSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE---TPEPYSTCTAVGWGAVFEHG------PDPDHM  186 (286)
Q Consensus       117 v~~~~~hp~y~-~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~---~~~~~~~~~~~Gwg~~~~~~------~~~~~l  186 (286)
                      |+++++||+|+ .....+|||||||++|+.|+++++|||||....   ....+..++++|||.+....      .....+
T Consensus        81 v~~i~~hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~~l  160 (259)
T 3rm2_H           81 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL  160 (259)
T ss_dssp             EEEEEECTTCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESCCSSCC-------CCCSBC
T ss_pred             EEEEEECCCCCCCCCCCCcEEEEEeCCceEcCCCcccccCCCccccccccCCCCEEEEeecCCCcCcCCccccccccccc
Confidence            99999999998 456789999999999999999999999987432   13467899999999875431      125679


Q ss_pred             eeEeeeecc--ccccccc--CCCCEEEEeeC---CCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCee
Q psy10841        187 REVQVPILP--ACKHYED--RIADVICAGMP---QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGV  259 (286)
Q Consensus       187 ~~~~~~~~~--~c~~~~~--~~~~~~C~~~~---~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v  259 (286)
                      +++.+++++  .|+..+.  ..+.+||++..   ....+.|.|||||||++... .+++|+|+||+||+..|+..+.|++
T Consensus       161 ~~~~~~~~~~~~C~~~~~~~~~~~~~Cag~~~~~~~~~~~C~GDsGgPL~~~~~-~~~~~~l~GI~S~g~~C~~~~~p~v  239 (259)
T 3rm2_H          161 QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSP-FNNRWYQMGIVSWGEGCDRDGKYGF  239 (259)
T ss_dssp             EEEEEEBCCHHHHHHTCSSCCCTTEEEECCCGGGSCCCBCCTTCTTCEEEEECT-TTCCEEEEEEEEECSSSSCTTCCEE
T ss_pred             eEEEEEEeCHHHhhhhhcccCCCceEeeeccCCCCCCCcccCCCCCCeeEEEEC-CCCCEEEEEEEEECCCCCCCCCCeE
Confidence            999999988  5876553  56889999753   22358999999999998753 3578999999999999998788999


Q ss_pred             EEeCCCcHHHHHhhhccc
Q psy10841        260 YTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       260 ~t~v~~~~~WI~~~~~~~  277 (286)
                      ||||++|++||+++|++.
T Consensus       240 yt~V~~~~~WI~~~i~~~  257 (259)
T 3rm2_H          240 YTHVFRLKKWIQKVIDQF  257 (259)
T ss_dssp             EEETGGGHHHHHHHHHHH
T ss_pred             EEEHHHhHHHHHHHHHHc
Confidence            999999999999998764

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=3.7e-49  Score=328.39  Aligned_cols=216  Identities=31%  Similarity=0.611  Sum_probs=186.5

Q ss_pred             eecCeeCCCCccceEEEEeeC---CeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRD---GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVM  122 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~---~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~  122 (286)
                      |+||+++..++|||+|+|+..   +.++|+||||+++||||||||+.+.....+.|++|..+........+.+.|.++++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~   80 (221)
T 1fuj_A            1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHFSVAQVFL   80 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTBTTCCCEEEEEEETTEEEECGGGGSSSCGGGEEEEESCSBTTSCCTTCEEEEEEEEEE
T ss_pred             CCCCEECCCCCcCCEEEEEEecCCCCEEEEEEEecCCEEEEchHhcCcCCCCceEEEEeeeeccCCCCceEEEEEEEEEe
Confidence            689999999999999999763   35889999999999999999998766678899999887766555678899999999


Q ss_pred             CCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc-cccccc
Q psy10841        123 HSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP-ACKHYE  201 (286)
Q Consensus       123 hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~-~c~~~~  201 (286)
                      | +|+.....+|||||||++|+.|++.++|||||........+..++++|||.+...+.....+++..+.++. .|..  
T Consensus        81 h-~y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~~~~C~~--  157 (221)
T 1fuj_A           81 N-NYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRP--  157 (221)
T ss_dssp             C-CCBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSCSSSCBCSBCEEEEEEEECTTCCT--
T ss_pred             C-CCCCCCCcccEEEEEeCCccccCCcceeeECCCCcCCCCCCCEEEEEEeCCCCCCCCHHHHhhcccceEEeeecCC--
Confidence            9 99988889999999999999999999999999866555678999999999887666667789998888874 4653  


Q ss_pred             cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        202 DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       202 ~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                          .++|++......+.|.|||||||++..       +|+||+|++. +|...+.|++||||++|++||+++++
T Consensus       158 ----~~~Ca~~~~~~~~~C~GDSGgPL~~~~-------~l~Gi~s~~~~gC~~~~~p~vyt~v~~~~~WI~~~i~  221 (221)
T 1fuj_A          158 ----HNICTFVPRRKAGICFGDSGGPLICDG-------IIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             ----TEEEEECSSSSCBCCTTCTTCEEEETT-------EEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             ----ceeeeccCCCCCCCCCCCCCCeeEECC-------EEeEEEEEeccCCCCCCCCcEEEeHHHHHHHHHHHhC
Confidence                389998755567899999999999832       6999999965 58877789999999999999999875

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=100.00  E-value=3.8e-49  Score=330.96  Aligned_cols=221  Identities=30%  Similarity=0.615  Sum_probs=185.3

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEe-eeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRP-VSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~-v~~~~~hp  124 (286)
                      |+||+++..++|||+|+|+..+.++|+||||+++||||||||+..    .+.+.+|...........+.+. ++.++.||
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~----~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~   76 (234)
T 3s69_A            1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCDNT----NFQMKLGVHSKKVLNEDEQTRNPKEKFICPN   76 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEECSSCEEEEEEEEETTEEEECGGGCCS----SCEEEESCCCSSSCCTTCEEECEEEEEECTT
T ss_pred             CCCCccCCCCCCceEEEEeeCCCeEEeEEEeeCCEEEEchhhCCC----CceEEecccccccccCCcceeeceEEEECCC
Confidence            689999999999999999888889999999999999999999853    4578888776654444444444 45566699


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCC-CCCccceeEeeeecc--cccccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPILP--ACKHYE  201 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~--~c~~~~  201 (286)
                      +|+.....+|||||||++|+.|++.++|||||...  ...+..++++|||.+.... .....++...+.+++  .|+..+
T Consensus        77 ~~~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~--~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~  154 (234)
T 3s69_A           77 KKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSP--PSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGY  154 (234)
T ss_dssp             CCTTCTTSSCCEEEEESSCCCCBTTBCCCCCCSSC--CCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHC
T ss_pred             ccCCCCCcccEEEEeeCCcCCCCCcceeeecCCCC--CCCCCEEEEEECCCCCCCCcCcccccceeEEeecCHHHHhhhc
Confidence            99999999999999999999999999999999744  3457899999999876543 456789999999888  587654


Q ss_pred             c---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCC-CCCCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        202 D---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       202 ~---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~-c~~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                      .   ....+||++......+.|.|||||||++..       .|+||+|||.. |...+.|++||||++|++||+++++..
T Consensus       155 ~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~  227 (234)
T 3s69_A          155 PELLTEYRTLCAGILEGGKDTCGGDSGGPLICNG-------QFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIAGN  227 (234)
T ss_dssp             TTCCTTSCEEEEECTTCSCBCCTTCTTCEEEETT-------EEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred             ccccCCcceEeccCCCCCCccCCCCCccceEEcC-------EEEEEEEEcccccCCCCCCcEEeeHHHHHHHHHHHhcCC
Confidence            3   567799998766778999999999999844       39999999985 988778999999999999999998765


Q ss_pred             cc
Q psy10841        278 KV  279 (286)
Q Consensus       278 ~~  279 (286)
                      ..
T Consensus       228 ~~  229 (234)
T 3s69_A          228 TT  229 (234)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=100.00  E-value=1.1e-49  Score=351.13  Aligned_cols=235  Identities=30%  Similarity=0.623  Sum_probs=182.7

Q ss_pred             CCCCCccC---CCceecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCC
Q psy10841         35 MAGNPILG---SGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPT  111 (286)
Q Consensus        35 ~~~~~~~~---~~~i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~  111 (286)
                      .||.....   ..||+||++|..++|||+|+|..   .+|+||||+++||||||||+.....  ..|++|.++...  ..
T Consensus        69 ~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~---~~CgGsLIs~~~VLTAAHC~~~~~~--~~v~~G~~~~~~--~~  141 (333)
T 1elv_A           69 VCGVPREPFEEKQRIIGGSDADIKNFPWQVFFDN---PWAGGALINEYWVLTAAHVVEGNRE--PTMYVGSTSVQT--SR  141 (333)
T ss_dssp             CCSCCSSCC-----CBTCEECCGGGSTTEEEEET---TEEEEEEEETTEEEECHHHHTTCSS--CCEECSCSBCC-----
T ss_pred             CcCCCCCcccccceeecCcccCCCCcCeEEEecC---CceeEEEecCCEEEehhheeCCCCC--CeEEEeeeeccc--Cc
Confidence            56765432   46999999999999999999952   2799999999999999999976432  367888776522  23


Q ss_pred             ceEEee---eEEEECCCCCC-------CCCCCceEEEEecCccccCCceeeeecCCCCCC--CCCCCceEEEEecccCCC
Q psy10841        112 EQVRPV---SRIVMHSMFKR-------AEMTNDLALLQLAAPLRYNRYVRPICLPDVTET--PEPYSTCTAVGWGAVFEH  179 (286)
Q Consensus       112 ~~~~~v---~~~~~hp~y~~-------~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~--~~~~~~~~~~Gwg~~~~~  179 (286)
                      .+.+.|   +++++||+|+.       ....+|||||||++|+.|++.++|||||.....  ...+..++++|||.+.. 
T Consensus       142 ~~~~~v~~v~~i~~Hp~y~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~~~g~~~~v~GWG~t~~-  220 (333)
T 1elv_A          142 LAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEK-  220 (333)
T ss_dssp             ----CEECEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGGGCCCTTCEEEEEESCCCSS-
T ss_pred             cceeeeeccceEEECCCCcccccccccCCCcceEEEEEeCCCCcCCCcccceecCCCcccccccCCcEEEEEECcCcCC-
Confidence            345556   99999999984       457899999999999999999999999975432  44578999999998754 


Q ss_pred             CCCCccceeEeeeecc--cccccc-----------cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEE
Q psy10841        180 GPDPDHMREVQVPILP--ACKHYE-----------DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVS  246 (286)
Q Consensus       180 ~~~~~~l~~~~~~~~~--~c~~~~-----------~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s  246 (286)
                      +.....|+++.+++++  .|+..+           ...+.+||++... ..+.|.|||||||++...+.+.+|+|+||+|
T Consensus       221 ~~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~~~~~~~~~~Cag~~~-~~~~C~GDSGGPL~~~~~~~~~~~~l~GIvS  299 (333)
T 1elv_A          221 RDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEK-GMDSCKGDSGGAFAVQDPNDKTKFYAAGLVS  299 (333)
T ss_dssp             CSSCSBCEEEEEEEECHHHHHTC----------CCCCCTTEEEEECST-TCBCCTTCTTCEEEEECSSCTTCEEEEEEEE
T ss_pred             CCcCceeEEEEEEEEcHHHhhhhhhcccccccccccCCCCeECccCCC-CCCcCcCcCCCceEEEECCCCcEEEEEEEEe
Confidence            3456789999999988  586543           3567899998644 6789999999999997543333899999999


Q ss_pred             ecCCCCCCCCCeeEEeCCCcHHHHHhhhccccccc
Q psy10841        247 HGEGCARPNEPGVYTRVSQFVPWLMSNSERAKVEC  281 (286)
Q Consensus       247 ~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~~~~~~  281 (286)
                      ||..|+.   |++||||++|++||++++++...+.
T Consensus       300 ~g~~C~~---~~vyt~V~~y~~WI~~~~~~~~~p~  331 (333)
T 1elv_A          300 WGPQCGT---YGLYTRVKNYVDWIMKTMQENSTPR  331 (333)
T ss_dssp             ECSSTTS---EEEEEEGGGGHHHHHHHHHHTC---
T ss_pred             eCCCCCC---CcEEeEHHHHHHHHHHHHhccCCCC
Confidence            9999973   8999999999999999998766544

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=100.00  E-value=3.8e-50  Score=353.00  Aligned_cols=234  Identities=30%  Similarity=0.598  Sum_probs=187.9

Q ss_pred             CCCCCcc---CCCceecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCC-----CCceEEEEEeeeecc
Q psy10841         35 MAGNPIL---GSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGF-----EKHYFEVYAGMLRRF  106 (286)
Q Consensus        35 ~~~~~~~---~~~~i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~-----~~~~~~v~~g~~~~~  106 (286)
                      .||....   ...||+||++|..++|||+|.|...  .+|+||||+++||||||||+...     ....+.|++|.++..
T Consensus        76 ~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~--~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~V~~G~~~~~  153 (329)
T 1md8_A           76 VCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIH--GRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVE  153 (329)
T ss_dssp             CCSCCSSCCCCC--CBSCCBCCTTSCTTEEEEESS--SEEEEEEETTTEEEECGGGTSCTTC-----CCCCEEESCSBHH
T ss_pred             CCCCCCCcccccccccCCEECCCCCCCCeEeeccC--CCcceEEecCCEEEecCCEEEeCCcccCCCceEEEEecccccc
Confidence            4776432   3469999999999999999999753  47999999999999999999642     234567899977653


Q ss_pred             cCCCCceEEeeeEEEECCCCCCC---CCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCC
Q psy10841        107 SFSPTEQVRPVSRIVMHSMFKRA---EMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDP  183 (286)
Q Consensus       107 ~~~~~~~~~~v~~~~~hp~y~~~---~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~  183 (286)
                      ... ..+.+.|+++++||+|+..   ...+|||||||++|+.|+++++|||||........+..++++|||.+...  .+
T Consensus       154 ~~~-~~~~~~V~~i~~Hp~y~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~--~~  230 (329)
T 1md8_A          154 ELM-KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEK--IA  230 (329)
T ss_dssp             HHH-HHCCCCEEEEEECSSCCSSCTTCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCBCSSS--BC
T ss_pred             ccc-cccceeeEEEEECCCcccccCCCCCccEEEEEECCcccCCCceEccccCCCccccCCCCEEEEEeCCCCCCC--CC
Confidence            211 2245679999999999865   67899999999999999999999999975444456788999999987543  56


Q ss_pred             ccceeEeeeecc--cccccc-------cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCC
Q psy10841        184 DHMREVQVPILP--ACKHYE-------DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARP  254 (286)
Q Consensus       184 ~~l~~~~~~~~~--~c~~~~-------~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~  254 (286)
                      ..|+++.+++++  .|+..+       ...+.+||++......+.|.|||||||++.. +.+++|+|+||+|||.+|.. 
T Consensus       231 ~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~~~~iCAg~~~~~~d~C~GDSGGPL~~~~-~~~~~~~l~GIvS~G~~C~~-  308 (329)
T 1md8_A          231 HDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRD-PNTDRWVATGIVSWGIGCSR-  308 (329)
T ss_dssp             SBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCSCBCCTTTTTCEEEEEE-TTTTEEEEEEEEEECSSSSS-
T ss_pred             ccceEEEEEEcCHHHHHHHhhcccccccCCCCeEeeecCCCCCcCCCCccccceEEEE-CCCCcEEEEEEEEECCCcCC-
Confidence            789999999988  587643       2567899998654567999999999999864 23679999999999999984 


Q ss_pred             CCCeeEEeCCCcHHHHHhhhcc
Q psy10841        255 NEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       255 ~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                       .|++||||++|++||+++|++
T Consensus       309 -~~gvyT~V~~y~~WI~~~i~~  329 (329)
T 1md8_A          309 -GYGFYTKVLNYVDWIKKEMEE  329 (329)
T ss_dssp             -SCEEEEEGGGTHHHHHHHHHC
T ss_pred             -CCcEEEEHHHHHHHHHHHHhC
Confidence             489999999999999998864

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=100.00  E-value=2.8e-49  Score=331.29  Aligned_cols=219  Identities=31%  Similarity=0.650  Sum_probs=185.5

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCC-CCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFS-PTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~-~~~~~~~v~~~~~hp  124 (286)
                      |+||+++..++|||+|.|+.+ .++|+||||+++||||||||+.+    .+.|++|..+..... ...+.+.+.++++||
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~-~~~CgGsLIs~~~VLTAAHC~~~----~~~v~~G~~~~~~~~~~~~~~~~v~~~~~hp   75 (231)
T 2aiq_A            1 VIGGDECNINEHRFLALVYAN-GSLCGGTLINQEWVLTARHCDRG----NMRIYLGMHNLKVLNKDALRRFPKEKYFCLN   75 (231)
T ss_dssp             CBSCEECCTTSCTTEEEEEET-TEEEEEEECSSSEEEECGGGCCS----SCEEEESCSCTTSCCTTCEEECEEEEECCSS
T ss_pred             CCCCeECCCCCCCeEEEEEcC-CCeEEEEEEeCCEEEEcHHcCCC----CCEEEEecccccccCCCceEEEEEEEEEECC
Confidence            689999999999999999864 57899999999999999999864    457889987765332 235677899999999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCC-CCCCccceeEeeeecc--cccccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEH-GPDPDHMREVQVPILP--ACKHYE  201 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~~~~~--~c~~~~  201 (286)
                      +|+.....+|||||||++|+.|++.++|||||....  ..+..++++|||.+... ......++++.+.+++  +|+..+
T Consensus        76 ~y~~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~--~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~  153 (231)
T 2aiq_A           76 TRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPP--SVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAY  153 (231)
T ss_dssp             CCSSSTTTTCCEEEEESSCCCCBTTBCCCCCCSSCC--CTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHC
T ss_pred             CCCCCCCCCCEEEEEecCCCCCCCcEEeeECCCCCC--CCCCEEEEEeCCccCCCCCccCchhhhccceecchhhhhhhh
Confidence            999988899999999999999999999999997443  46789999999987644 3346789999999988  587654


Q ss_pred             c-CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEec-CCCCCCCCCeeEEeCCCcHHHHHhhhcccc
Q psy10841        202 D-RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPWLMSNSERAK  278 (286)
Q Consensus       202 ~-~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~-~~c~~~~~p~v~t~v~~~~~WI~~~~~~~~  278 (286)
                      . ..+.+||++......+.|.|||||||++..       +|+||+||+ ..|...+.|++||||++|++||+++++...
T Consensus       154 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~~  225 (231)
T 2aiq_A          154 KGLAATTLCAGILEGGKDTCKGDSGGPLICNG-------QFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISGNT  225 (231)
T ss_dssp             TTCCSSEEEEECTTCSCBCCTTCTTCEEEETT-------EEEEEEEEECSSTTCTTCCEEEEEGGGGHHHHHHHHHTCS
T ss_pred             cCCCcCcEEeccCCCCCcccCCcCCCcEEECC-------EEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHcCCC
Confidence            3 567899998656678899999999999832       599999999 689877889999999999999999987543

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=100.00  E-value=1.7e-49  Score=358.55  Aligned_cols=236  Identities=31%  Similarity=0.624  Sum_probs=196.0

Q ss_pred             CCCCCccC-CCceecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCC--CceEEEEEeeeecccCCCC
Q psy10841         35 MAGNPILG-SGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFE--KHYFEVYAGMLRRFSFSPT  111 (286)
Q Consensus        35 ~~~~~~~~-~~~i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~--~~~~~v~~g~~~~~~~~~~  111 (286)
                      .||..... ..||+||++|..++|||+|+|+.  .++|+||||+++||||||||+....  ...+.|++|.++..  ...
T Consensus       150 ~CG~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~--~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~V~~G~~~~~--~~~  225 (403)
T 1zjk_A          150 VCGLSARTTGGQIYGGQKAKPGDFPWQVLILG--GTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRL--SPH  225 (403)
T ss_dssp             CCCCCSSCCSCCCSSCEECCTTSSTTEEEEEE--SCCEEEEEETTTEEEECHHHHGGGTTCSTTEEEEESCSBTT--CSC
T ss_pred             CCCCCCCCCCccccCCcCCCCCCcCCEeEecc--CCceEEEEecCCEEEEcHHhCCCCCCCcceEEEEccccccC--CCC
Confidence            56665432 46999999999999999999986  4679999999999999999996542  46788999987532  335


Q ss_pred             ceEEeeeEEEECCCCCCC-CCCCceEEEEecCccccCCceeeeecCCCCCC--CCCCCceEEEEecccCCCCCCCcccee
Q psy10841        112 EQVRPVSRIVMHSMFKRA-EMTNDLALLQLAAPLRYNRYVRPICLPDVTET--PEPYSTCTAVGWGAVFEHGPDPDHMRE  188 (286)
Q Consensus       112 ~~~~~v~~~~~hp~y~~~-~~~~DiAllkL~~~i~~~~~v~picL~~~~~~--~~~~~~~~~~Gwg~~~~~~~~~~~l~~  188 (286)
                      .+.+.|+++++||+|+.. ...+|||||||++++.|+++++|||||.....  ...+..++++|||.+... ..+..|++
T Consensus       226 ~~~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~v~GWG~~~~~-~~~~~L~~  304 (403)
T 1zjk_A          226 YTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRG-FLARNLMY  304 (403)
T ss_dssp             CEEEEEEEEEECTTCCTTSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGGGSSTTCEEEEEESCTTSSS-CCCSBCEE
T ss_pred             ceEEeEEEEEECCCCCCCCCCcccEEEEEeCCcCcCCCceecccCCCcccccccCCCCeEEEEcCCcCCCC-ccCcccEE
Confidence            678899999999999987 78899999999999999999999999975432  456789999999987543 55778999


Q ss_pred             Eeeeecc--cccccc--------cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEec-CCCCCCCCC
Q psy10841        189 VQVPILP--ACKHYE--------DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEP  257 (286)
Q Consensus       189 ~~~~~~~--~c~~~~--------~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~-~~c~~~~~p  257 (286)
                      +.+++++  +|+..+        ...+.+||++......+.|.|||||||++... .+++|+|+||+||| ..|...+.|
T Consensus       305 ~~v~v~~~~~C~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~-~~~~~~l~GIvS~g~~~C~~~~~p  383 (403)
T 1zjk_A          305 VDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDS-ETERWFVGGIVSWGSMNCGEAGQY  383 (403)
T ss_dssp             EEEEEECHHHHHHHTTSSSCCSSCSCTTEEEECCSSCCTTSCSCSTTCEEEEEET-TTTEEEEEEEEEEECSCC--CCCC
T ss_pred             EEEeEeCHHHHhhhhhccccccCcCCCCeEeeccCCCCCCCCcCCCCccEEEEEC-CCCcEEEEEEEEECCCCCCCCCCC
Confidence            9999988  587644        35678999987555789999999999998652 35799999999999 689877789


Q ss_pred             eeEEeCCCcHHHHHhhhcc
Q psy10841        258 GVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       258 ~v~t~v~~~~~WI~~~~~~  276 (286)
                      +|||||+.|++||+++|++
T Consensus       384 ~vyt~V~~y~~WI~~~i~~  402 (403)
T 1zjk_A          384 GVYTKVINYIPWIENIISD  402 (403)
T ss_dssp             EEEEEGGGGHHHHHHHHTT
T ss_pred             eEEEEHHHHHHHHHHHHhc
Confidence            9999999999999999864

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=100.00  E-value=4.9e-49  Score=330.32  Aligned_cols=220  Identities=31%  Similarity=0.646  Sum_probs=184.9

Q ss_pred             eecCeeCCCCccceEEEEeeC--CeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceE-EeeeEEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRD--GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQV-RPVSRIVM  122 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~--~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~-~~v~~~~~  122 (286)
                      |+||+++..++|||+|+|+..  +.++|+||||+++||||||||+.    ..+.|.+|..+........+. ..+..+++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~----~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~   76 (234)
T 3s9c_A            1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDR----RNIRIKLGMHSKNIRNEDEQIRVPRGKYFC   76 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEEEETTEEEECGGGCC----TTEEEEESCSSSSSCCTTCEEECEEEEECC
T ss_pred             CCCCeeCCCCCCCeEEEEEECCCCcEEEeeEEeeCCEEEEchhhcC----CCceEEEeecccccccCCcceEEeeeEEEe
Confidence            689999999999999999876  56889999999999999999985    356889998766544434443 34556667


Q ss_pred             CCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccc
Q psy10841        123 HSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHY  200 (286)
Q Consensus       123 hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~  200 (286)
                      ||.|+.....+|||||||++|+.|++.++|||||...  ...+..++++|||.+... .....++...+.+++  .|+..
T Consensus        77 h~~~~~~~~~~DIALl~L~~~v~~~~~v~pi~L~~~~--~~~~~~~~v~GwG~~~~~-~~~~~l~~~~~~~~~~~~C~~~  153 (234)
T 3s9c_A           77 LNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRS--RGVGSRCRIMGWGKISTT-TYPDVPHCTNIFIVKHKWCEPL  153 (234)
T ss_dssp             SSCSSTTCGGGCCEEEEESSCCCCBTTBCCCBCCSSC--CCTTCEEEEEESSCSBTT-BCCSSCEEEEEEEECGGGTTTT
T ss_pred             CCCCCCCCCcCceEEEEECCccccCCcccccccCCCC--CCCCCeEEEEeeCCCCCC-CCCccccccceEecCHHHhhhc
Confidence            9999998889999999999999999999999999854  334789999999987544 556789999999888  58776


Q ss_pred             cc---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCC-CCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        201 ED---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       201 ~~---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~-c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      +.   ..+.+||++......+.|.|||||||++..       .|+||+|++.. |...+.|++||||++|++||+++++.
T Consensus       154 ~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~-------~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~~  226 (234)
T 3s9c_A          154 YPWVPADSRTLCAGILKGGRDTCHGDSGGPLICNG-------EMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIAG  226 (234)
T ss_dssp             CTTSCTTSSEEEEECTTSSCBCCTTCTTCEEEETT-------EEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred             ccCCCCCcceEEeecCCCCCccCCCCCCCeEEEeC-------CcEEEEEEeCCCCCCCCCCcEEEEhHHhHHHHHHHHcC
Confidence            53   567899998766778999999999999854       39999999986 98877899999999999999999987


Q ss_pred             ccc
Q psy10841        277 AKV  279 (286)
Q Consensus       277 ~~~  279 (286)
                      +..
T Consensus       227 ~~~  229 (234)
T 3s9c_A          227 NRT  229 (234)
T ss_dssp             CSS
T ss_pred             CCe
Confidence            654

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=100.00  E-value=1e-48  Score=329.22  Aligned_cols=220  Identities=31%  Similarity=0.671  Sum_probs=184.6

Q ss_pred             eecCeeCCCCccceEEEEeeC--CeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceE-EeeeEEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRD--GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQV-RPVSRIVM  122 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~--~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~-~~v~~~~~  122 (286)
                      |+||+++..++|||+|+|+..  +.++|+||||+++||||||||+..    .+.|.+|..+........+. ..++.+++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~~----~~~v~~g~~~~~~~~~~~~~~~~~~~~~~   76 (238)
T 4e7n_A            1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDRK----NFRIKLGMHSKKVPNEDEQTRVPKEKFFC   76 (238)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTTCCEEEEEEECSSSEEEECGGGCCS----SCEEEESCSCSSSCCTTCEEECEEEEECS
T ss_pred             CCCCeeCCCCCcCcEEEEEECCCCCEEEEEEEecCCEEEEhHHcCCC----CCeEEeceeeccccCCCceeEeeeeeEEc
Confidence            689999999999999999865  678999999999999999999853    45788887766544433443 44566677


Q ss_pred             CCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCC-CCCccceeEeeeecc--cccc
Q psy10841        123 HSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       123 hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~--~c~~  199 (286)
                      ||+|+.....+|||||||++|+.|++.++|||||...  ...+..++++|||.+.... .....++...+.+++  +|+.
T Consensus        77 h~~~~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~--~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~  154 (238)
T 4e7n_A           77 LSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSP--PSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRA  154 (238)
T ss_dssp             STTCCCCSSSCCCEEEEESSCCCCBTTBCCCCCCSSC--CCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECGGGGTT
T ss_pred             CCCCCCCCCCCcEEEEEeCCCccCCCceeeeeCCCCC--CCCCCEEEEEECCCCCCCCCCCCccceEeeccccCHHHHhh
Confidence            9999999999999999999999999999999999744  3457899999999876543 557789999999888  5876


Q ss_pred             ccc-----CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCC-CCCCCCCeeEEeCCCcHHHHHhh
Q psy10841        200 YED-----RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMSN  273 (286)
Q Consensus       200 ~~~-----~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~-c~~~~~p~v~t~v~~~~~WI~~~  273 (286)
                      .+.     ..+.+||++......+.|.|||||||++..       .|+||+|||.. |...+.|++||||++|++||+++
T Consensus       155 ~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-------~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~  227 (238)
T 4e7n_A          155 PYPEFELPATSRTLCAGILEGGKDTCKGDSGGPLICNG-------QFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENI  227 (238)
T ss_dssp             TCGGGCCCSCCSEEEEECTTCSCBCCTTCTTCEEEETT-------EEEEEEEECCSSTTCTTCCEEEEESGGGHHHHHHH
T ss_pred             hcccccCCCCCCeEEeCCCCCCCccCCCCCCcceEECC-------EEEEEEEEeCCCCCCCCCCeEEEEhHHHHHHHHHH
Confidence            543     567899998766778999999999999844       39999999986 88878899999999999999999


Q ss_pred             hcccc
Q psy10841        274 SERAK  278 (286)
Q Consensus       274 ~~~~~  278 (286)
                      ++...
T Consensus       228 i~~~~  232 (238)
T 4e7n_A          228 IAGNT  232 (238)
T ss_dssp             HTTCT
T ss_pred             HhcCC
Confidence            97654

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=100.00  E-value=7.3e-50  Score=377.81  Aligned_cols=238  Identities=34%  Similarity=0.766  Sum_probs=187.7

Q ss_pred             CCCCCCccCCCceecCeeCCCCccceEEEEeeC---CeEEeEEEEeeCCEEEeccCCcCCCC-CceEEEEEeeeecccCC
Q psy10841         34 DMAGNPILGSGRVVGGKKAELGAWPWLIALYRD---GFFHCGGVVLDESWVMTAAHCVDGFE-KHYFEVYAGMLRRFSFS  109 (286)
Q Consensus        34 ~~~~~~~~~~~~i~~g~~a~~~~~Pw~v~i~~~---~~~~C~GtLIs~~~VLTaAhC~~~~~-~~~~~v~~g~~~~~~~~  109 (286)
                      +.||...  ..||+||+++..++|||+|.|+..   +.++|+||||+++||||||||+.+.. ...+.|++|..+.....
T Consensus       378 ~~Cg~~~--~~rIvgG~~a~~~~~Pw~v~L~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~  455 (625)
T 2f83_A          378 NECTTKI--KPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIK  455 (625)
T ss_dssp             CSSCSCC--CSCCCSSSSCCTTSSTTEEEEEECSSSSEEEEEEEECSSSEEEECGGGGSSCCCGGGEEEEESCSBGGGCC
T ss_pred             cccCCCC--CCceECCEECCCCCCCeEEEEEEecCCCcEEEEEEEECCCEEEEcHHhCCCCCCCceEEEEEEeccCCCCC
Confidence            3566543  579999999999999999999764   47899999999999999999997643 35688999988776555


Q ss_pred             CCceEEeeeEEEECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeE
Q psy10841        110 PTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREV  189 (286)
Q Consensus       110 ~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~  189 (286)
                      ...+.+.|+++++||+|+.....+|||||||++|+.|+++++|||||........+..++++|||.+...+..+..|+++
T Consensus       456 ~~~~~~~V~~ii~Hp~y~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~~~~~~~v~GWG~~~~~~~~s~~L~~~  535 (625)
T 2f83_A          456 EDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKA  535 (625)
T ss_dssp             SSCCCEEEEEEEECTTCCBTTTBCCCEEEEESSCCCCBTTBCCCBCCCGGGTTCCCCCEEECBCC------CCCSBCBCC
T ss_pred             CCceEEeEEEEEECCccCcCCccccEEEEEECCcccCCCceeeeEcCCccCCccCCCEEEEEEecCCCCCCcCCcccEEE
Confidence            45667899999999999998889999999999999999999999999865555567889999999886666667889999


Q ss_pred             eeeecc--ccccccc---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCC
Q psy10841        190 QVPILP--ACKHYED---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS  264 (286)
Q Consensus       190 ~~~~~~--~c~~~~~---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~  264 (286)
                      .+++++  +|+..+.   ..+.+||++......+.|.|||||||++..   +++|+|+||+|||.+|...+.|+|||||+
T Consensus       536 ~v~i~~~~~C~~~~~~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~---~~~~~lvGIvS~G~~C~~~~~P~vyT~V~  612 (625)
T 2f83_A          536 KIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKH---NEVWHLVGITSWGEGCAQRERPGVYTNVV  612 (625)
T ss_dssp             EECCCCHHHHHTTCTTSCCCTTBCCC----------CCCTTCEEEEEE---TTEEEEEEEEEECCC----CCCCEEEEGG
T ss_pred             EEEEcCHHHHHHHhccCCCCCCeEEeecCCCCCcCCCCCcccceEEEE---CCeEEEEEEEEeCCCCCCCCCCeEEEEHH
Confidence            999988  5876543   567899998655667899999999999976   67999999999999998778899999999


Q ss_pred             CcHHHHHhhhcc
Q psy10841        265 QFVPWLMSNSER  276 (286)
Q Consensus       265 ~~~~WI~~~~~~  276 (286)
                      .|++||+++++.
T Consensus       613 ~y~~WI~~~~~~  624 (625)
T 2f83_A          613 EYVDWILEKTQA  624 (625)
T ss_dssp             GGHHHHHHTC--
T ss_pred             HHHHHHHHHHhc
Confidence            999999998853

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-49  Score=361.34  Aligned_cols=234  Identities=33%  Similarity=0.721  Sum_probs=191.9

Q ss_pred             CCceecCeeCCCCccceEEEEeeC--CeEEeEEEEeeCCEEEeccCCcCC------CCCceEEEEEeeeecccCCC-Cce
Q psy10841         43 SGRVVGGKKAELGAWPWLIALYRD--GFFHCGGVVLDESWVMTAAHCVDG------FEKHYFEVYAGMLRRFSFSP-TEQ  113 (286)
Q Consensus        43 ~~~i~~g~~a~~~~~Pw~v~i~~~--~~~~C~GtLIs~~~VLTaAhC~~~------~~~~~~~v~~g~~~~~~~~~-~~~  113 (286)
                      ..||+||++|..++|||+|+|+..  +.++|+||||+++||||||||+..      .....+.|++|.++...... ..+
T Consensus       163 ~~RIvgG~~a~~g~~Pw~v~l~~~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~  242 (424)
T 3nxp_A          163 DGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEK  242 (424)
T ss_dssp             SSCCCCCEECCTTSCTTEEEEEETTTTEEEEEEEESSSSEEEECHHHHEEGGGTEECCGGGEEEEESCCBSSSCCTTTCE
T ss_pred             CCeeECCEECCCCCCCCEEEEeecCCCCccceeEEEcCCEEEEhHHhcCccccccccCcccEEEEeCcccccccCCCcee
Confidence            469999999999999999999764  478999999999999999999852      23467899999887654332 346


Q ss_pred             EEeeeEEEECCCCC-CCCCCCceEEEEecCccccCCceeeeecCCCCCC---CCCCCceEEEEecccCC------CCCCC
Q psy10841        114 VRPVSRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET---PEPYSTCTAVGWGAVFE------HGPDP  183 (286)
Q Consensus       114 ~~~v~~~~~hp~y~-~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~---~~~~~~~~~~Gwg~~~~------~~~~~  183 (286)
                      .+.|+++++||+|+ ...+.+|||||||++|+.|+++++|||||.....   ...+..++++|||.+..      .....
T Consensus       243 ~~~V~~ii~Hp~y~~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~g~~~~v~GWG~t~~~~~~~~~~~~~  322 (424)
T 3nxp_A          243 ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQP  322 (424)
T ss_dssp             EECEEEEEECTTCBTTTTSBTCCEEEEESSCCCCCSSCCCCBCCCHHHHHHHHHHCSEEEEEESSHHHHHHHHC----CC
T ss_pred             EEEEEEEEeCCCCCCCCCCcCCeEEEEecCccccCCcccccCCCCcccccccccCCCeEEEEecCCCCccCccccCCCCC
Confidence            67899999999998 4567899999999999999999999999874321   23568899999997642      12236


Q ss_pred             ccceeEeeeecc--ccccccc--CCCCEEEEeeCC---CCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCC
Q psy10841        184 DHMREVQVPILP--ACKHYED--RIADVICAGMPQ---GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNE  256 (286)
Q Consensus       184 ~~l~~~~~~~~~--~c~~~~~--~~~~~~C~~~~~---~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~  256 (286)
                      ..|+++.+.+++  .|+..+.  ..+.+||++...   ...+.|.|||||||++... .+++|+|+||+|||.+|+..+.
T Consensus       323 ~~L~~~~v~ii~~~~C~~~~~~~i~~~~iCAg~~~~~~~~~d~C~GDSGGPLv~~~~-~~~~~~l~GIvS~G~~C~~~~~  401 (424)
T 3nxp_A          323 SVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSP-FNNRWYQMGIVSWGEGCDRDGK  401 (424)
T ss_dssp             SBCEEEEEEBCCHHHHHHTCSSCCCTTEEEESCCCBTTBCCCTTCSCTTCEEEEECT-TTCCEEEEEEECCSSCTTTCCS
T ss_pred             ccceEEEeeEEcHHHhhhhccCcCCCCeEecccCCCCCCCCccCCCcCCCceEEEEC-CCCcEEEEEEEEeCCCCCCCCC
Confidence            789999999998  5876543  568899997532   2358999999999998752 3678999999999999998889


Q ss_pred             CeeEEeCCCcHHHHHhhhccc
Q psy10841        257 PGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       257 p~v~t~v~~~~~WI~~~~~~~  277 (286)
                      |+|||||+.|++||+++|++.
T Consensus       402 pgVyT~Vs~y~~WI~~~i~~~  422 (424)
T 3nxp_A          402 YGFYTHVFRLKKWIQKVIDQF  422 (424)
T ss_dssp             CEEEEECTTCHHHHHHHHHHH
T ss_pred             CEEEEEHHHHHHHHHHHHHHh
Confidence            999999999999999998753

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=100.00  E-value=1.7e-49  Score=371.22  Aligned_cols=242  Identities=30%  Similarity=0.622  Sum_probs=158.0

Q ss_pred             CCCCCcc---CCCceecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCC-C
Q psy10841         35 MAGNPIL---GSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFS-P  110 (286)
Q Consensus        35 ~~~~~~~---~~~~i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~-~  110 (286)
                      .||....   ...||+||++|..++|||+|+|+..+.++|+||||+++||||||||+.......+.|++|.++..... .
T Consensus       308 ~CG~~~~~~~~~~rIvgG~~a~~g~~Pw~v~l~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~V~~G~~~~~~~~~~  387 (565)
T 2xrc_A          308 SCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRASKTHRYQIWTTVVDWIHPDLK  387 (565)
T ss_dssp             CCCC--------------------CCTTBCEEEESSSCCCCCEEEETTEEEECHHHHTTCSSCCEEEEC-----------
T ss_pred             ccCCCCCcccCCCceECCEECCCCCCCcEEEEecCCceeeeEEEEeCCEEEEChhhcccCCCcceEEEEEEeeccCCCCC
Confidence            5665432   24699999999999999999998877889999999999999999999876667788999987765433 3


Q ss_pred             CceEEeeeEEEECCCCCCCCCCCceEEEEecCccccCC----ceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccc
Q psy10841        111 TEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNR----YVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHM  186 (286)
Q Consensus       111 ~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~~----~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l  186 (286)
                      ..+.+.|+++++||+|+..++.||||||||++|+.|++    .++|||||........+..++++|||.+.. +.....|
T Consensus       388 ~~~~~~V~~ii~Hp~Y~~~~~~nDIALlkL~~~v~~~~~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~-~~~~~~L  466 (565)
T 2xrc_A          388 RIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKD-NERVFSL  466 (565)
T ss_dssp             --CEEEEEEEEECTTCCTTTCTTCCEEEEECCCSSSSCSCCTTCCCCBCCSCTTSSCTTCEEEEEC--------------
T ss_pred             ccEEEEEEEEEeCCCCCCCcccccceeeeeccccccccccccceeeeecCCcccccCCCCEEEEEeCccCCC-CCcccee
Confidence            45778899999999999999999999999999998764    689999997655556778999999998754 3456789


Q ss_pred             eeEeeeeccccccccc--CC-CCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeC
Q psy10841        187 REVQVPILPACKHYED--RI-ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRV  263 (286)
Q Consensus       187 ~~~~~~~~~~c~~~~~--~~-~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v  263 (286)
                      +.+.+++++.|+..+.  .. ..+||++......+.|.|||||||++...  +++|+|+||+|||..|...+.|+|||||
T Consensus       467 ~~~~v~i~~~C~~~~~~~~~~~~~iCAg~~~g~~d~C~GDSGGPLv~~~~--~~~~~lvGIvS~G~~C~~~~~PgVYTrV  544 (565)
T 2xrc_A          467 QWGEVKLISNCSKFYGNRFYEKEMECAGTYDGSIDACKGDSGGPLVCMDA--NNVTYVWGVVSWGENCGKPEFPGVYTKV  544 (565)
T ss_dssp             CEEEEEECSCTHHHHTTSCCTTTEEEEEEC----------CCCEEEEECT--TCCEEEEEEECC------CCCCEEEEEG
T ss_pred             eEEeeeehHHhHHhhccCcCCCceEEeCCCCCCCccCCCccccceEEEeC--CCcEEEEEEEeeCCCCCCCCCCEEEEEH
Confidence            9999999999987654  23 44999997655678999999999998653  6789999999999999887889999999


Q ss_pred             CCcHHHHHhhhccccc
Q psy10841        264 SQFVPWLMSNSERAKV  279 (286)
Q Consensus       264 ~~~~~WI~~~~~~~~~  279 (286)
                      ++|++||+++++.+.+
T Consensus       545 s~y~~WI~~~i~~~~~  560 (565)
T 2xrc_A          545 ANYFDWISYHVGRPFI  560 (565)
T ss_dssp             GGGHHHHHHHC-----
T ss_pred             HHHHHHHHHHhccccc
Confidence            9999999999987655

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=100.00  E-value=8.5e-49  Score=326.81  Aligned_cols=217  Identities=34%  Similarity=0.619  Sum_probs=182.6

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCC-CceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFE-KHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~-~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |+||++|..++|||+|+|.    +.|+||||+++||||||||+.... ...+.|++|..+...  ...+.+.+.++++||
T Consensus         1 IvgG~~a~~~~~Pw~v~l~----~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~--~~~~~~~v~~i~~hp   74 (224)
T 3beu_A            1 VVGGTRAAQGEFPFMVRLS----MGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQS--SSAVKVRSTKVLQAP   74 (224)
T ss_dssp             CBTCEECCTTTSTTEEEET----TTEEEEEEETTEEEECGGGSCSSEEBCCCEEEESCSBTTC--TTCEEEEEEEEEECT
T ss_pred             CCCCeECCCCCCCEEEEEC----CceeEEEeeCCEEEEChhhcCCCCCcceEEEEeeEeecCC--CCceEEEEEEEEeCC
Confidence            6899999999999999995    459999999999999999997642 356788999776543  234778899999999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYED  202 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~~  202 (286)
                      +|+.....+|||||||++|+.+    .|+||+....  ..+..++++|||.+...+.....|++..+++++  +|+..+.
T Consensus        75 ~y~~~~~~~DIALl~L~~~v~~----~~i~l~~~~~--~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~  148 (224)
T 3beu_A           75 GFTKETYGKDWALIKLAQPINQ----PTLKIATTTA--YNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSS  148 (224)
T ss_dssp             TCCCGGGSCCCEEEEESSCCCS----CCCEECCSST--TSSSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHHHCS
T ss_pred             CcCCCcCCCCEEEEEeCCCCCC----Cccccccccc--cCCCEEEEEecCccCCCCcccceeeEeeCcccCHHHhhhhcC
Confidence            9998888999999999999964    6788876432  334689999999887666677889999999988  5876553


Q ss_pred             ---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        203 ---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       203 ---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                         ..+.+||++......+.|.|||||||++..  .+++|+|+||+||+..|...+.|++||||++|++||++++++
T Consensus       149 ~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~--~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~  223 (224)
T 3beu_A          149 FILVANEMICAGYDTKQEDTCQGDSGGPMFRKD--NADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAART  223 (224)
T ss_dssp             SCCCGGGEEEECCSSSSCBCCTTCTTCEEEEEC--TTSCEEEEEEEEEESSSSCTTCCEEEEEHHHHHHHHHHHHTT
T ss_pred             CccCCCCeEEeccCCCCCcCCCCcCCCeeEEec--CCCCEEEEEEeccCCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence               457799998655667899999999999865  368999999999999998777899999999999999999874

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=100.00  E-value=2.3e-48  Score=325.49  Aligned_cols=216  Identities=29%  Similarity=0.565  Sum_probs=181.8

Q ss_pred             eecCeeCCCCccceEEEEee----CCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYR----DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIV  121 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~----~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~  121 (286)
                      |+||++|..++|||+|+|+.    .+.++|+||||+++||||||||+.+  ...+.|++|..+...   ..+.+.+++++
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~--~~~~~v~~G~~~~~~---~~~~~~v~~i~   75 (230)
T 2hlc_A            1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHD--AVSVVVYLGSAVQYE---GEAVVNSERII   75 (230)
T ss_dssp             CBTCEECCTTTSTTEEEEEEEETTSCEEEEEEEEEETTEEEECHHHHTT--EEEEEEEESCSBTTC---CSEEEECSEEE
T ss_pred             CCCCeECCCCCCCcEEEEEEEecCCCCEEEEEEEeeCCEEEECHHHCCC--CcceEEEEeeeecCC---CCeEEEEEEEE
Confidence            68999999999999999975    5678999999999999999999965  456788898776544   34788999999


Q ss_pred             ECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCC--CCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cc
Q psy10841        122 MHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE--TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC  197 (286)
Q Consensus       122 ~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~--~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c  197 (286)
                      +||+|+.....+|||||||+ ++.|++.++|||||....  ....+..++++|||.+....   ..+++..+.+++  .|
T Consensus        76 ~hp~y~~~~~~~DiALl~L~-~~~~~~~v~picLp~~~~~~~~~~~~~~~v~GwG~~~~~~---~~l~~~~~~~~~~~~C  151 (230)
T 2hlc_A           76 SHSMFNPDTYLNDVALIKIP-HVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTDT---VILQYTYNLVIDNDRC  151 (230)
T ss_dssp             ECTTCBTTTTBTCCEEEECS-CCCCCSSCCCCBCCCGGGGGCCCTTCEEEEEESSCCSSCC---CBCEEEEEEEECHHHH
T ss_pred             ECCCCCCCCccccEEEEEec-CCCcCCcEeeeEcCCccccccccCCcEEEEEeeeecCCCC---ceeEEEEEEEeCHHHh
Confidence            99999998889999999999 999999999999997543  23467889999999875433   678888888887  58


Q ss_pred             ccccc---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC--CCCCCCCCeeEEeCCCcHHHHHh
Q psy10841        198 KHYED---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWLMS  272 (286)
Q Consensus       198 ~~~~~---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~--~c~~~~~p~v~t~v~~~~~WI~~  272 (286)
                      +..+.   ..+.+||++. ....+.|.|||||||++..     +++|+||+||+.  .|. .+.|.+||||++|++||++
T Consensus       152 ~~~~~~~~~~~~~~Ca~~-~~~~~~C~GDSGgPl~~~~-----~~~l~Gi~S~g~~~~C~-~~~p~vyt~V~~~~~WI~~  224 (230)
T 2hlc_A          152 AQEYPPGIIVESTICGDT-SDGKSPCFGDSGGPFVLSD-----KNLLIGVVSFVSGAGCE-SGKPVGFSRVTSYMDWIQQ  224 (230)
T ss_dssp             HTTSCTTSSCTTEEEECC-TTSCBCCTTCTTCEEEEGG-----GTEEEEEEEECCTTCTT-SCCCEEEEEGGGGHHHHHH
T ss_pred             hhhhCCCcccCCeEEecC-CCCCCcCCCCCCCeeEECc-----CCEEEEEEEEeCCCCCC-CCCCCEEEEhHHhHHHHHH
Confidence            76553   5678999975 4567899999999999854     237999999987  674 5789999999999999999


Q ss_pred             hhccc
Q psy10841        273 NSERA  277 (286)
Q Consensus       273 ~~~~~  277 (286)
                      +++.+
T Consensus       225 ~~~~~  229 (230)
T 2hlc_A          225 NTGIK  229 (230)
T ss_dssp             HHCCC
T ss_pred             hhCcC
Confidence            98764

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=100.00  E-value=5e-49  Score=328.95  Aligned_cols=218  Identities=25%  Similarity=0.462  Sum_probs=188.8

Q ss_pred             ecCeeCCCCccceEEEEeeCC---eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEEC
Q psy10841         47 VGGKKAELGAWPWLIALYRDG---FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMH  123 (286)
Q Consensus        47 ~~g~~a~~~~~Pw~v~i~~~~---~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~h  123 (286)
                      +||+++..++|||+|+|+..+   .++|+||||+++||||||||+.+.....+.|.+|..+..... ..+.+.++++++|
T Consensus         1 ~gG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~v~~g~~~~~~~~-~~~~~~v~~i~~h   79 (228)
T 3h7o_A            1 KGGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETIVIQYESTNLWEDP-GKSDPYVSHVYLS   79 (228)
T ss_dssp             CCCEECCGGGSTTEEEEEECGGGCCEEEEEEESSSSEEEECHHHHTTSCGGGCEEEESCSBTTTBC-CEEECCEEEEEES
T ss_pred             CCCccCCcCCCCeEEEEeecCCCCceEeeeEEeeCCEEEEcHHhcccCCCCcEEEEecccccccCC-CceeeeEEEEEcc
Confidence            489999999999999998654   348999999999999999999876677889999987765433 4477889999999


Q ss_pred             CCCCCCCCCCceEEEEecCccccCC-ceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccc
Q psy10841        124 SMFKRAEMTNDLALLQLAAPLRYNR-YVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHY  200 (286)
Q Consensus       124 p~y~~~~~~~DiAllkL~~~i~~~~-~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~  200 (286)
                       +|+.....+|||||||++|+.|++ .++|||||........+..++++|||.+...+.....|+++.+.+++  +|+..
T Consensus        80 -~y~~~~~~~DIALl~L~~~v~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~  158 (228)
T 3h7o_A           80 -FYRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTK  158 (228)
T ss_dssp             -SCBTTTTBTCCEEEEESSCCCCCSSSSCCCBCCCTTCCCCTTCEEEEEECCCSSCSCGGGGBCEEEEEEEECHHHHHHH
T ss_pred             -ccCCCCccCCEEEEEECCcccccccccccccCCccccCCCCCCeeEEEEEecCCCCCCcccccccceeEEEcHHHHHHH
Confidence             999988999999999999999999 99999999876556788999999999887666667889999999998  68776


Q ss_pred             cc---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        201 ED---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       201 ~~---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      +.   ....+||++..  ..+.|.|||||||++..       .|+||+|++..|.. +.|++||||+.|++||++++++
T Consensus       159 ~~~~~~~~~~~Ca~~~--~~~~C~GDsGgPl~~~~-------~l~Gi~S~g~~c~~-~~p~vyt~v~~~~~WI~~~i~~  227 (228)
T 3h7o_A          159 YGPIFLSLQVFCAQKV--GVSLESGDAGDPTVQQD-------TLVGVAAYFPKRPE-GAPEVFTKVGSYVSWIQDIIKK  227 (228)
T ss_dssp             HTTSCCCSSEEEEECT--TCCCCGGGTTCEEEETT-------EEEEEECCCTTCCT-TCCEEEEEGGGTHHHHHHHHTT
T ss_pred             hcCccCCceEEecCCC--CCcCCCCCCCCcceecC-------eEEEEEeecCcCCC-CCCcEEEEHHHHHHHHHHHhhc
Confidence            54   56789999853  37899999999999843       39999999999887 7899999999999999999875

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=100.00  E-value=6e-49  Score=338.80  Aligned_cols=218  Identities=20%  Similarity=0.368  Sum_probs=171.4

Q ss_pred             CeeCCCCccceEEEEee-CCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCC
Q psy10841         49 GKKAELGAWPWLIALYR-DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFK  127 (286)
Q Consensus        49 g~~a~~~~~Pw~v~i~~-~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~  127 (286)
                      |+++..++|||+|+|+. ++.++|+||||+++||||||||+...  ..+.|++|..+.   ....+.+.|+++++||+|+
T Consensus        56 g~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~~--~~~~V~~G~~~~---~~~~~~~~v~~i~~Hp~y~  130 (283)
T 3f1s_B           56 KRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLH--RNITVKTYFNRT---SQDPLMIKITHVHVHMRYD  130 (283)
T ss_dssp             -------CCTTEEEEECTTSCEEEEEEEEETTEEEECHHHHTSC--SSCEEEECTTC----CCCCEEEEEEEEEECTTCB
T ss_pred             CccccccccCCEEEEEecCCCeeeccEEecCCEEEEcHHhcCcc--CceEEEEeeeeC---CCCcEEEEeEEEEECCCCC
Confidence            89999999999999986 56789999999999999999999653  367899997654   3367889999999999999


Q ss_pred             CCCCCCceEEEEecCccccCCceeeeecCCCC---CCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccccc
Q psy10841        128 RAEMTNDLALLQLAAPLRYNRYVRPICLPDVT---ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYED  202 (286)
Q Consensus       128 ~~~~~~DiAllkL~~~i~~~~~v~picL~~~~---~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~~  202 (286)
                      ..+..||||||||++|+.|+++++|||||...   .....+..++++|||.  ..+..+..|+++.+++++  .|+..+.
T Consensus       131 ~~~~~nDIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~--~~~~~~~~L~~~~v~~~~~~~C~~~~~  208 (283)
T 3f1s_B          131 ADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLVEGEECGQVLN  208 (283)
T ss_dssp             TTTTBTCCEEEEESSCCCTTTTCCCCBCCCHHHHHHTTTTTSCEEEEECBC--C-------CEEEEEEEECHHHHHHHHT
T ss_pred             CCCCCCCEEEEEeCCcccCCCCEEeEECCCCccccccccCCCEEEEEECCC--CCCCCCceeeEEEEeEeCHHHHhhhhc
Confidence            99999999999999999999999999999754   1345678999999998  345567889999999998  5877654


Q ss_pred             --CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcccccc
Q psy10841        203 --RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERAKVE  280 (286)
Q Consensus       203 --~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~~~~~  280 (286)
                        ..+.+||++.. .  ..|.+||||||++..   +++|+|+||+||+. |+..+.|+|||||++|++||+++|++...+
T Consensus       209 ~~~~~~~~Ca~~~-~--~~~~gDSGgPlv~~~---~~~~~l~GIvS~g~-c~~~~~p~vyt~V~~y~~WI~~~~~~~~~~  281 (283)
T 3f1s_B          209 VTVTTRTYCERSS-V--AAMHWMDGSVVTREH---RGSWFLTGVLGSQP-VGGQAHMVLVTKVSRYSLWFKQIMNAHHHH  281 (283)
T ss_dssp             SCCCTTEEEEECS-S--CGGGBCTTCEEEEEC---SSCEEEEEEECCCS-GGGCSSEEEEEEGGGGHHHHHHHHTC----
T ss_pred             CCCCCCeEcccCC-C--CCCCCCCCCcEEEEE---CCEEEEEEEEEeCC-CCCCCcceEEEEhHHhHHHHHHHhhcchhc
Confidence              57889999752 2  356779999999875   67999999999986 666678999999999999999999887653

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=100.00  E-value=2.8e-48  Score=350.29  Aligned_cols=235  Identities=30%  Similarity=0.610  Sum_probs=184.1

Q ss_pred             CCCCCcc---CCCceecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCC-----CceEEEEEeeeecc
Q psy10841         35 MAGNPIL---GSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFE-----KHYFEVYAGMLRRF  106 (286)
Q Consensus        35 ~~~~~~~---~~~~i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~-----~~~~~v~~g~~~~~  106 (286)
                      .||....   ...||+||++|..++|||+|.+...  .+|+||||+++||||||||+....     ...+.|++|.++..
T Consensus       144 ~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~--~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~  221 (399)
T 1gpz_A          144 VCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIH--GRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVE  221 (399)
T ss_dssp             CCSCCSSCCCSSCCCCSCEECCTTSSTTEEEEESS--SEEEEEEETTTEEEECGGGTSCTTC-----CCCEEEESCSBHH
T ss_pred             CCCCcCCcccCCCEEECCEECCCCCCCCEEEECCC--CCeEEEEeCCCEEEeChhcccccccccCCcceEEEEecccccc
Confidence            5666532   2469999999999999999998643  369999999999999999996532     23567899977654


Q ss_pred             cCCCCceEEeeeEEEECCCCCCC---CCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCC
Q psy10841        107 SFSPTEQVRPVSRIVMHSMFKRA---EMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDP  183 (286)
Q Consensus       107 ~~~~~~~~~~v~~~~~hp~y~~~---~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~  183 (286)
                      ... ..+.+.|+++++||+|+..   .+.||||||||++|+.|+++++|||||........+..++++|||.+..  ...
T Consensus       222 ~~~-~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~--~~~  298 (399)
T 1gpz_A          222 ELM-KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEE--KIA  298 (399)
T ss_dssp             HHH-HTCCCCEEEEEECSSCCSSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECC-------CC
T ss_pred             ccc-cccccceEEEEECCCCCcCCCCCCCCcEEEEEECCcCcCCCceeeeecCCCccccCCCCEEEEEccCCCCC--ccC
Confidence            321 1245779999999999854   4679999999999999999999999998554445678899999998753  345


Q ss_pred             ccceeEeeeecc--ccccccc-------CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCC
Q psy10841        184 DHMREVQVPILP--ACKHYED-------RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARP  254 (286)
Q Consensus       184 ~~l~~~~~~~~~--~c~~~~~-------~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~  254 (286)
                      ..|+++.+++++  .|+..+.       ..+.+||++......+.|.|||||||++... .+++|+|+||+|||.+|.. 
T Consensus       299 ~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~Cag~~~~~~d~C~GDSGGPl~~~~~-~~~~~~l~GivS~g~~C~~-  376 (399)
T 1gpz_A          299 HDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDP-NTDRWVATGIVSWGIGCSR-  376 (399)
T ss_dssp             SBCEEEEEEEECHHHHHC-----------CCSEEEEECGGGGGGGGCSCSSCEEEEEET-TTTEEEEEEEECCCTTTTT-
T ss_pred             ccceEEEEEEcCHHHhhhhhhcccccCcCCCCeEecccCCCCCccCCCCCchHeEEEEC-CCCeEEEEEEEEeCCCcCC-
Confidence            789999999988  5876442       4678999986545678999999999998652 3578999999999999985 


Q ss_pred             CCCeeEEeCCCcHHHHHhhhccc
Q psy10841        255 NEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       255 ~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                       .|+|||||+.|++||+++|+++
T Consensus       377 -~~~vyt~V~~y~~WI~~~~~~~  398 (399)
T 1gpz_A          377 -GYGFYTKVLNYVDWIKKEMEEE  398 (399)
T ss_dssp             -TEEEEEEGGGGHHHHHHHTC--
T ss_pred             -CCeEEEEhHHhHHHHHHHhccC
Confidence             3899999999999999999764

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=100.00  E-value=3e-46  Score=358.37  Aligned_cols=232  Identities=38%  Similarity=0.778  Sum_probs=197.9

Q ss_pred             CCCCCccC----CCceecCeeCCCCccceEEEEeeC-CeEEeEEEEeeCCEEEeccCCcCCCC-CceEEEEEeeeecccC
Q psy10841         35 MAGNPILG----SGRVVGGKKAELGAWPWLIALYRD-GFFHCGGVVLDESWVMTAAHCVDGFE-KHYFEVYAGMLRRFSF  108 (286)
Q Consensus        35 ~~~~~~~~----~~~i~~g~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTaAhC~~~~~-~~~~~v~~g~~~~~~~  108 (286)
                      .||.....    ..||+||++|..++|||+|+|+.. +.++|+||||+++||||||||+.... ...+.|++|..+....
T Consensus       547 ~CG~~~~~~~~~~~RIvGG~~a~~~~~PW~VsL~~~~~~~~CGGSLIs~~wVLTAAHCv~~~~~~~~~~V~lG~~~~~~~  626 (791)
T 4dur_A          547 DCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNL  626 (791)
T ss_dssp             CTTCCSSCCCCCCTTCTTCEECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGGSSCCCGGGCEEEESCCBSSSC
T ss_pred             CcCCcccccccCCCceECCEECCCCCCCeEEEEEecCCCeEEEEEEEeCCEEEECHHHcCCcCCCceEEEEeccccccCC
Confidence            56665543    369999999999999999999754 67899999999999999999997543 3678899998877666


Q ss_pred             CCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCcccee
Q psy10841        109 SPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMRE  188 (286)
Q Consensus       109 ~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~  188 (286)
                      ....+.+.|.++++||.      .+|||||||++++.|++.|+|||||........+..++++|||.+. .......|++
T Consensus       627 ~~~~q~~~V~~i~~hp~------~nDIALLkL~~pv~~s~~V~PIcLP~~~~~~~~g~~~~vsGWG~t~-~~~~s~~L~~  699 (791)
T 4dur_A          627 EPHVQEIEVSRLFLEPT------RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ-GTFGAGLLKE  699 (791)
T ss_dssp             CTTCEEEEEEEEEECTT------CCSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCC----CCTTBCEE
T ss_pred             CCccEEEEEEEEECCCC------CCceEEEEecCccccCCceeeeeccCcccccCCCCEEEEEEeCCCC-CCCCCCeeEE
Confidence            66778899999999997      4799999999999999999999999876666778899999999875 3345678999


Q ss_pred             Eeeeecc--cccccc----cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEe
Q psy10841        189 VQVPILP--ACKHYE----DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTR  262 (286)
Q Consensus       189 ~~~~~~~--~c~~~~----~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~  262 (286)
                      +.+.+++  .|+...    .+.+.+||++......+.|.|||||||++..   +++|+|+||+|||.+|+..+.|+||||
T Consensus       700 ~~v~ii~~~~C~~~~~~~~~i~~~~iCAg~~~gg~daC~GDSGGPLv~~~---~~~~~LvGIvS~G~gC~~~~~PgVYTr  776 (791)
T 4dur_A          700 AQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFE---KDKYILQGVTSWGLGCARPNKPGVYVR  776 (791)
T ss_dssp             EEEEEECHHHHTSTTTTTTCCCTTEEEESCSSSCCCBCCSCTTCEEEEEE---TTEEEEEEECCTTTCCBBTTBCEEEEE
T ss_pred             EEEEEeCHHHhhcccccCCCCCCCeEEeccCCCCCCCCCCCcccceEEEe---CCeEEEEEEEEeCCCCCCCCCCeEEEE
Confidence            9999998  586541    3678899998766678999999999999976   679999999999999998888999999


Q ss_pred             CCCcHHHHHhhhcc
Q psy10841        263 VSQFVPWLMSNSER  276 (286)
Q Consensus       263 v~~~~~WI~~~~~~  276 (286)
                      |+.|++||+++|++
T Consensus       777 Vs~y~dWI~~~i~~  790 (791)
T 4dur_A          777 VSRFVTWIEGVMRN  790 (791)
T ss_dssp             GGGTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999875

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=100.00  E-value=1.7e-46  Score=328.66  Aligned_cols=214  Identities=20%  Similarity=0.373  Sum_probs=181.7

Q ss_pred             cCeeCCCCccceEEEEee-CCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCC
Q psy10841         48 GGKKAELGAWPWLIALYR-DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMF  126 (286)
Q Consensus        48 ~g~~a~~~~~Pw~v~i~~-~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y  126 (286)
                      .|+.+..++|||+|+|+. .+.++|+||||+++||||||||+..  ...+.|++|..+..   ...+.+.|+++++||+|
T Consensus        96 ~G~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~~--~~~~~V~~G~~~~~---~~~~~~~v~~i~~Hp~y  170 (317)
T 3h5c_B           96 EKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLL--HRNITVKTYFNRTS---QDPLMIKITHVHVHMRY  170 (317)
T ss_dssp             CCSSCCTTCCTTEEEEECSSSCEEEEEEEEETTEEEECHHHHHS--CSSCEEEECTTSCT---TSCEEEEEEEEEECTTC
T ss_pred             ccccCccCCCCcEEEEeccCCceeeeeEEeeCCEEEEChHhcCc--CCceEEEEeeecCC---CCcEEEEeeEEEECCCC
Confidence            488999999999999986 5678999999999999999999954  34678889866543   36788999999999999


Q ss_pred             CCCCCCCceEEEEecCccccCCceeeeecCCCC---CCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccccc
Q psy10841        127 KRAEMTNDLALLQLAAPLRYNRYVRPICLPDVT---ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYE  201 (286)
Q Consensus       127 ~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~---~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~  201 (286)
                      +.....+|||||||++|+.|+++++|||||...   .....+..++++|||.  ..+..+..|+++.+.+++  +|+..+
T Consensus       171 ~~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~--~~~~~~~~L~~~~v~~~~~~~C~~~~  248 (317)
T 3h5c_B          171 DADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLVEGEECGQVL  248 (317)
T ss_dssp             BTTTTBSCCEEEEESSCCCTTTSCCCCBCCCHHHHHHTTTTTSCEEEEBCCT--TCCSSSCCCBCCEEEEECHHHHHHHH
T ss_pred             CCCCCCCCeEEEEeCCcccCCCCccceeCCCcccccccccCCCeEEEEecCC--CCCCCCccceEEEEEEECHHHHhhhh
Confidence            999899999999999999999999999999753   1345678999999997  345567789999999988  587665


Q ss_pred             c--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        202 D--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       202 ~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                      .  ..+.+||++..   ...|.|||||||++..   +++|+|+||+|++. |+..+.|++||||++|++||+++|+
T Consensus       249 ~~~~~~~~~Ca~~~---~~~~~gDsGgPl~~~~---~~~~~l~Gi~S~g~-~~~~~~p~vyt~V~~y~~WI~~~i~  317 (317)
T 3h5c_B          249 NVTVTTRTYCERSS---VAAMHWMDGSVVTREH---RGSWFLTGVLGSQP-VGGQAHMVLVTKVSRYSLWFKQIMN  317 (317)
T ss_dssp             TCCCCTTEEEEECS---CCCCCCCTTCEEEEEE---TTEEEEEEEECCCC-SSCCTTEEEEEEGGGCHHHHHHHHC
T ss_pred             cCcCCCceeECCCC---CCCcCCCCCCCEEEec---CCEEEEEEEEEECC-CCCCCcceEEEEhHHhHHHHHHHhC
Confidence            4  57889999742   3468899999999976   68999999999985 6666789999999999999999874

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=100.00  E-value=7.9e-44  Score=329.77  Aligned_cols=231  Identities=26%  Similarity=0.465  Sum_probs=178.3

Q ss_pred             ccCCCCCCccCCCceecCeeCCCCccceEEEEee----CCeEEeEEEEeeCCEEEeccCCcCCCC-CceEEEEEeeeecc
Q psy10841         32 ATDMAGNPILGSGRVVGGKKAELGAWPWLIALYR----DGFFHCGGVVLDESWVMTAAHCVDGFE-KHYFEVYAGMLRRF  106 (286)
Q Consensus        32 ~~~~~~~~~~~~~~i~~g~~a~~~~~Pw~v~i~~----~~~~~C~GtLIs~~~VLTaAhC~~~~~-~~~~~v~~g~~~~~  106 (286)
                      ....||....      .+..+..++|||+|+|+.    .+.++|+||||+++||||||||+.... ...+.|.+|..   
T Consensus       207 ~~~~CG~~~~------~~~~~~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~---  277 (497)
T 1rrk_A          207 SLSLCGMVWE------HRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGE---  277 (497)
T ss_dssp             GTTCTTCCCC------CTTCCHHHHSTTEEEEEECC--CCCEEEEEEECSSSEEEECGGGCCTTCCGGGEEEEETTC---
T ss_pred             CcCCCCCCCC------CCCCCCccccCcEEEEEEEcCCCCCceeEEEEecCCEEEECHHhCCCCCCceEEEEEeCCc---
Confidence            3456776432      245677889999999974    346899999999999999999997542 35678888842   


Q ss_pred             cCCCCceEEeeeEEEECCCCCCC---------CCCCceEEEEecCccccCCceeeeecCCCCC-----CCCCCCceEEEE
Q psy10841        107 SFSPTEQVRPVSRIVMHSMFKRA---------EMTNDLALLQLAAPLRYNRYVRPICLPDVTE-----TPEPYSTCTAVG  172 (286)
Q Consensus       107 ~~~~~~~~~~v~~~~~hp~y~~~---------~~~~DiAllkL~~~i~~~~~v~picL~~~~~-----~~~~~~~~~~~G  172 (286)
                           .+.+.|+++++||+|+..         .+.||||||||++|+.|+++++|||||....     ....+..|++.|
T Consensus       278 -----~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~~~~~g  352 (497)
T 1rrk_A          278 -----KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQK  352 (497)
T ss_dssp             -----SSCEEEEEEEECTTCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHH
T ss_pred             -----cceeeeEEEEeCCCccccccccccccccCCCcEEEEEECCCCcCCCCeeeeeCCCCCccccccccCCCCchhccc
Confidence                 456889999999999864         5689999999999999999999999997431     234567888889


Q ss_pred             ecccCCCC-------CCCccceeEeeeecc-----ccccc------c--------cCCCCEEEEeeCCC--CCCCCCCCC
Q psy10841        173 WGAVFEHG-------PDPDHMREVQVPILP-----ACKHY------E--------DRIADVICAGMPQG--GRDTCQGDS  224 (286)
Q Consensus       173 wg~~~~~~-------~~~~~l~~~~~~~~~-----~c~~~------~--------~~~~~~~C~~~~~~--~~~~c~gds  224 (286)
                      ||......       .....|++..+.+++     .|+..      +        ...+.+||++....  ..+.|.|||
T Consensus       353 ~g~~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~iCag~~~~~~~~~~C~GDS  432 (497)
T 1rrk_A          353 EELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDS  432 (497)
T ss_dssp             HHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGGGT
T ss_pred             ccccCCccccceeeccCCCcceeeeEEEecCcccchhhhhhhhcccccccccccccCCCCeEEeCCCCCCCCCcCCCCCC
Confidence            98653221       134678888888876     58652      1        25678999986432  468999999


Q ss_pred             CCeeeeecCCCCCcEEEEEEEEecC--CCC----CCCCCe----eEEeCCCcHHHHHhhhccccc
Q psy10841        225 GGPLLCPVPGSQGRWYVAGVVSHGE--GCA----RPNEPG----VYTRVSQFVPWLMSNSERAKV  279 (286)
Q Consensus       225 GgPL~~~~~~~~~~~~lvGI~s~~~--~c~----~~~~p~----v~t~v~~~~~WI~~~~~~~~~  279 (286)
                      ||||++..   +++|+|+||+|||.  .|.    ..+.|.    +||+|++|++||+++++++.+
T Consensus       433 GGPL~~~~---~~~~~l~GIvS~g~~~~C~~~~~~~~~P~~~r~vyt~V~~~~~WI~~~~~~~~~  494 (497)
T 1rrk_A          433 GGPLIVHK---RSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDEDL  494 (497)
T ss_dssp             TCEEEEEE---TTEEEEEEEEEEESCCCC--------CCTTCEEEEEEGGGGHHHHHHHTTTSSC
T ss_pred             CCeeEEEe---CCEEEEEEEEEecCCCCCCCccccCCCCCccceeeeeHHHHHHHHHHHhCcccc
Confidence            99999976   67999999999998  698    356674    999999999999999987543

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=100.00  E-value=3.3e-44  Score=333.28  Aligned_cols=231  Identities=22%  Similarity=0.419  Sum_probs=172.4

Q ss_pred             cCCCCCCccCCCceecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCC-CCceEEEEEeeeecccCCCC
Q psy10841         33 TDMAGNPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGF-EKHYFEVYAGMLRRFSFSPT  111 (286)
Q Consensus        33 ~~~~~~~~~~~~~i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~-~~~~~~v~~g~~~~~~~~~~  111 (286)
                      ...||..      ..+|+++..++|||+|+|+..+.++|+||||+++||||||||+... ....+.|++|.++.    ..
T Consensus       217 ~~~CG~~------~~~g~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~----~~  286 (509)
T 2odp_A          217 DTICGVG------NMSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKS----QW  286 (509)
T ss_dssp             SCCSSCC------CCCTTSCHHHHCTTEEEEEC----CEEEEECSSSEEEECGGGC--------CEEEECCTTC----TT
T ss_pred             CcccCCc------CCCCCccccCCCCcEEEEEeCCCcEEEEEEEcCCEEEEcHHHcCCCCCcceEEEEeCCccc----CC
Confidence            3456653      3578899999999999998777789999999999999999999753 23567899997653    24


Q ss_pred             ceEEeeeEEEECCCCCCC---------CCCCceEEEEecCccccCCceeeeecCCCCC-----CCCCCCceEEEEecccC
Q psy10841        112 EQVRPVSRIVMHSMFKRA---------EMTNDLALLQLAAPLRYNRYVRPICLPDVTE-----TPEPYSTCTAVGWGAVF  177 (286)
Q Consensus       112 ~~~~~v~~~~~hp~y~~~---------~~~~DiAllkL~~~i~~~~~v~picL~~~~~-----~~~~~~~~~~~Gwg~~~  177 (286)
                      .+.+.|+++++||+|+..         .+.||||||||++|+.|+++++|||||....     ....+..|++.|||...
T Consensus       287 ~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~g~~~~~~g~g~~~  366 (509)
T 2odp_A          287 GKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLN  366 (509)
T ss_dssp             CEEECEEEEEECTTCCTTTTGGGTCCCCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSC
T ss_pred             CceeeeEEEEECCCCccccccccccccccCCCeEEEEECCcccCCCCcccccCCCCcccchhhccCCCCccccccccccc
Confidence            578899999999999874         5689999999999999999999999996421     23456788888999764


Q ss_pred             CCCCCC----ccceeEeeeec-----cccccc-------c--------cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecC
Q psy10841        178 EHGPDP----DHMREVQVPIL-----PACKHY-------E--------DRIADVICAGMPQGGRDTCQGDSGGPLLCPVP  233 (286)
Q Consensus       178 ~~~~~~----~~l~~~~~~~~-----~~c~~~-------~--------~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~  233 (286)
                      ......    ...+..++.+.     ..|+..       +        ...+.+||++. ....+.|.|||||||+|.. 
T Consensus       367 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~iCag~-~~~~~~C~GDSGGPL~~~~-  444 (509)
T 2odp_A          367 KQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGT-QEDESPCKGESGGAVFLER-  444 (509)
T ss_dssp             SSEEEEEEECTTSCEEEEEEECTHHHHHHHHGGGGCTTTCTTCSSGGGTSCTTEEEECC-TTCCCCCGGGTTCEEEEEE-
T ss_pred             cccceeeeecccCceeeEEEecCccHHHHHHHhhcccccccccccccccccCCEEEeCC-CCCCcccCCCccCceEEEE-
Confidence            321110    11134455543     258763       2        25678999985 4567899999999999976 


Q ss_pred             CCCCcEEEEEEEEecC--CCC---------CCCCC------eeEEeCCCcHHHHHhhhccc
Q psy10841        234 GSQGRWYVAGVVSHGE--GCA---------RPNEP------GVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       234 ~~~~~~~lvGI~s~~~--~c~---------~~~~p------~v~t~v~~~~~WI~~~~~~~  277 (286)
                        +++|+|+||+|||.  .|.         ...+|      ++||||++|++||+++++.+
T Consensus       445 --~~~~~l~GIvS~G~~~~C~~~~~~~~~~~~~~Pg~~y~~~vyt~V~~~~~WI~~~~~~~  503 (509)
T 2odp_A          445 --RFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLGDV  503 (509)
T ss_dssp             --TTEEEEEEEEEEESCCTTC-----CCCCCCCTTCSSCCCEEEEEGGGCHHHHHHHHTTT
T ss_pred             --CCeEEEEEEEEEcCCCCCCCcccccccccCcccCCCCCCceeeeHHHHhHHHHHHhCCc
Confidence              68999999999997  696         23445      59999999999999999765

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=100.00  E-value=3.2e-41  Score=326.18  Aligned_cols=221  Identities=26%  Similarity=0.477  Sum_probs=169.7

Q ss_pred             eecCeeCCCCccceEEEEee----CCeEEeEEEEeeCCEEEeccCCcCCCC-CceEEEEEeeeecccCCCCceEEeeeEE
Q psy10841         46 VVGGKKAELGAWPWLIALYR----DGFFHCGGVVLDESWVMTAAHCVDGFE-KHYFEVYAGMLRRFSFSPTEQVRPVSRI  120 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~----~~~~~C~GtLIs~~~VLTaAhC~~~~~-~~~~~v~~g~~~~~~~~~~~~~~~v~~~  120 (286)
                      ...|+++..++|||+|.+..    .+.++|+||||+++||||||||+.... ...+.|++|..        .+.+.|+++
T Consensus       457 ~~~~~~~~~~~~Pw~~~v~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~--------~~~~~v~~i  528 (741)
T 3hrz_D          457 WEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGE--------KRDLEIEVV  528 (741)
T ss_dssp             CCC---CCTTTCTTEEEEEECCCC-----EEEEECSSSEEEECGGGCC-----CCEEEEETTC--------SCCEEEEEE
T ss_pred             cccCCcccccCcCCeEEEEEEeCCCCCCEEEEEEecCCEEEEchhhccccCCcceEEEEeCCC--------ceEEEEEEE
Confidence            34689999999999888864    245889999999999999999997532 45678888832        367889999


Q ss_pred             EECCCCCCCC---------CCCceEEEEecCccccCCceeeeecCCCC-----CCCCCCCceEEEEecccCCCC------
Q psy10841        121 VMHSMFKRAE---------MTNDLALLQLAAPLRYNRYVRPICLPDVT-----ETPEPYSTCTAVGWGAVFEHG------  180 (286)
Q Consensus       121 ~~hp~y~~~~---------~~~DiAllkL~~~i~~~~~v~picL~~~~-----~~~~~~~~~~~~Gwg~~~~~~------  180 (286)
                      ++||+|+...         +.||||||||++|+.|+++++|||||...     .....+..+.+.|||.+....      
T Consensus       529 ~~Hp~y~~~~~~~~~~~~~~~nDIALlkL~~pv~~s~~v~picLp~~~~~~~~~~~~~~~~~~~~gwg~~~~~~~~~~~~  608 (741)
T 3hrz_D          529 LFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFV  608 (741)
T ss_dssp             EECTTCCTTTTGGGTCSCCCTTCCEEEEESSCCCCCSSCCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEE
T ss_pred             EECCCCCcccccccccCCccCCcEEEEEECCcCcCCCCccccccCCcccccchhccCCCCccccccccccccccccceec
Confidence            9999998653         68999999999999999999999999532     124567888999999775432      


Q ss_pred             -CCCccceeEeeeecc-----ccccc--------------ccCCCCEEEEeeCC--CCCCCCCCCCCCeeeeecCCCCCc
Q psy10841        181 -PDPDHMREVQVPILP-----ACKHY--------------EDRIADVICAGMPQ--GGRDTCQGDSGGPLLCPVPGSQGR  238 (286)
Q Consensus       181 -~~~~~l~~~~~~~~~-----~c~~~--------------~~~~~~~~C~~~~~--~~~~~c~gdsGgPL~~~~~~~~~~  238 (286)
                       .....|+...+.+.+     .|...              ....+.+||++...  .+.+.|.|||||||++..   +++
T Consensus       609 ~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~i~~~~lCag~~~~~~~~~~C~GDSGGPL~~~~---~~~  685 (741)
T 3hrz_D          609 SEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK---RSR  685 (741)
T ss_dssp             EESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSSGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEE---TTE
T ss_pred             cccccccccceeEeecCcccchhhhhhhhccccccccccccccCCCeEecCCcCCCCCCCcCcCcccCceEEee---CCe
Confidence             124567888887775     36652              23668899998643  257899999999999977   689


Q ss_pred             EEEEEEEEecC--CCCC---CCCC-----eeEEeCCCcHHHHHhhhccc
Q psy10841        239 WYVAGVVSHGE--GCAR---PNEP-----GVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       239 ~~lvGI~s~~~--~c~~---~~~p-----~v~t~v~~~~~WI~~~~~~~  277 (286)
                      |+|+||+|||.  .|..   .+.|     ++||||+.|++||+++++++
T Consensus       686 ~~lvGIvS~G~~~~C~~~~~~~~p~~~~~~vyt~V~~~~~WI~~~i~~~  734 (741)
T 3hrz_D          686 FIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE  734 (741)
T ss_dssp             EEEEEEEEEESSCCCC------CCCTTCEEEEEEGGGSHHHHHHHTTTS
T ss_pred             EEEEEEEeecCCcccCCcccccCCCCCccceEEEhHHhHHHHHHHhcCC
Confidence            99999999997  8987   5778     99999999999999999885

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=100.00  E-value=3.7e-41  Score=278.95  Aligned_cols=197  Identities=17%  Similarity=0.183  Sum_probs=154.8

Q ss_pred             CceecCeeCCCCccce--EEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceE----EEEEeeeecccCCCCceEEee
Q psy10841         44 GRVVGGKKAELGAWPW--LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYF----EVYAGMLRRFSFSPTEQVRPV  117 (286)
Q Consensus        44 ~~i~~g~~a~~~~~Pw--~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~----~v~~g~~~~~~~~~~~~~~~v  117 (286)
                      .||++|+     ++||  ++.+. .+.++|+||||+++||||||||+.+.....+    .|++|..+...   ..+.+.|
T Consensus         9 ~rI~~g~-----~~P~~~~~~~~-~~~~~CgGtLIs~~~VLTAAHCv~~~~~~~~~~~~~v~~G~~~~~~---~~~~~~v   79 (215)
T 1p3c_A            9 TKVANTR-----VAPYNSIAYIT-FGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTA---VNGSANM   79 (215)
T ss_dssp             EECSCTT-----STTGGGEEEEE-CSSCEEEEEEEETTEEEECHHHHEETTTTEECCCCEEEETCBTTBC---TTCCEEE
T ss_pred             EEecCCC-----cCCCeEEEEEE-cCCceEEEEEEeCCEEEECccEeccCCCCccccceEEEEcccCCCC---CCCeEEE
Confidence            5788887     4677  45554 4568999999999999999999976554455    89999876544   2347889


Q ss_pred             eEEEECCCCC-CCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc-
Q psy10841        118 SRIVMHSMFK-RAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP-  195 (286)
Q Consensus       118 ~~~~~hp~y~-~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~-  195 (286)
                      +++++||+|+ .....+|||||||+++  |++.++|+|||...  ...+..++++|||.+.. ......+++..+.+++ 
T Consensus        80 ~~i~~hp~y~~~~~~~~DiAll~L~~~--~~~~v~pi~l~~~~--~~~g~~~~~~Gwg~~~~-~~~~~~l~~~~~~~~~~  154 (215)
T 1p3c_A           80 TEFYVPSGYINTGASQYDFAVIKTDTN--IGNTVGYRSIRQVT--NLTGTTIKISGYPGDKM-RSTGKVSQWEMSGSVTR  154 (215)
T ss_dssp             EEEECCHHHHHHCCGGGCCEEEEESSC--HHHHHCCCCBCCCS--CCTTCEEEEEECCHHHH-HHHSSCCCEEEEEECCE
T ss_pred             EEEEeCCccccCCCcccCEEEEEECCC--CcccceeeecCCCc--ccCCCeEEEecCCCCCc-ccccceechhccCccCc
Confidence            9999999994 5567899999999996  67889999998743  35678999999997633 2234567888888776 


Q ss_pred             -cccccccCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhh
Q psy10841        196 -ACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNS  274 (286)
Q Consensus       196 -~c~~~~~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~  274 (286)
                       .|...+             ...+.|.|||||||++..    +  +|+||+|++..|+  ..|.+|++|++|++||++++
T Consensus       155 ~~c~~~~-------------~~~~~C~GDSGgPl~~~~----g--~lvGi~S~g~~c~--~~p~v~t~v~~~~~WI~~~~  213 (215)
T 1p3c_A          155 EDTNLAY-------------YTIDTFSGNSGSAMLDQN----Q--QIVGVHNAGYSNG--TINGGPKATAAFVEFINYAK  213 (215)
T ss_dssp             ECSSEEE-------------ECCCCCTTCTTCEEECTT----S--CEEEECCEEEGGG--TEEEEEBCCHHHHHHHHHHH
T ss_pred             ccchhee-------------eccccCCCCCCCeeEccC----C--eEEEEEecccCCC--ccCceeEechHHHHHHHHHh
Confidence             465432             145789999999999732    1  6999999998887  56999999999999999987


Q ss_pred             c
Q psy10841        275 E  275 (286)
Q Consensus       275 ~  275 (286)
                      +
T Consensus       214 ~  214 (215)
T 1p3c_A          214 A  214 (215)
T ss_dssp             T
T ss_pred             c
Confidence            5

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...

Probab=100.00  E-value=2.2e-35  Score=225.25  Aligned_cols=128  Identities=33%  Similarity=0.682  Sum_probs=113.1

Q ss_pred             eecCeeCCCCccceEEEEee-CCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYR-DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~-~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |+||+++..++|||+|+|+. ++.++|+||||+++||||||||+..   ..+.|++|..+........+.+.|+++++||
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGsLIs~~~VLTAAHC~~~---~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp   77 (131)
T 1yph_C            1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVT---TSDVVVAGEFDQGSSSEKIQKLKIAKVFKNS   77 (131)
T ss_dssp             CBTCEECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGCCC---TTSEEEESCSBTTCSSSCCEEEEEEEEEECT
T ss_pred             CCCCEECCCCCcCcEEEEEeCCCCEEEEEEEeeCCEEEECHHHCCC---CCeEEEEeEccCCCCCCceEEEEEEEEEeCC
Confidence            68999999999999999986 5568999999999999999999965   3457889988776545566889999999999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEeccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAV  176 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~  176 (286)
                      +|+.....+|||||||++|+.|+++++|||||........+..|+++|||.+
T Consensus        78 ~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~g~~~~v~GWG~t  129 (131)
T 1yph_C           78 KYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLT  129 (131)
T ss_dssp             TCCTTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCS
T ss_pred             CCCCCCCCCCEEEEEECCcccCCCcCcceECCCcccCCCCCCEEEEEcCCcc
Confidence            9999888999999999999999999999999986555567889999999976

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B

Probab=99.97  E-value=1.1e-31  Score=209.86  Aligned_cols=141  Identities=34%  Similarity=0.684  Sum_probs=119.7

Q ss_pred             CCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCC---CCCccceeEeeeecc--cccccc
Q psy10841        127 KRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHG---PDPDHMREVQVPILP--ACKHYE  201 (286)
Q Consensus       127 ~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~---~~~~~l~~~~~~~~~--~c~~~~  201 (286)
                      +..++.||||||||++|+.|+++++|||||....  ..+..++++|||.+...+   ..+..|+++.+++++  +|+..+
T Consensus         2 d~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~--~~~~~~~v~GWG~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~   79 (152)
T 2pka_B            2 DGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEP--ELGSTCEASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCADAH   79 (152)
T ss_dssp             CCSBCTTCCEEEEESSCCCCCSSCCCCCCCSSCC--CTTCEEEEEESSCSSCCSSCCCCCSBCEEEEEEEECHHHHHHHC
T ss_pred             CCCCCCCCEEEEEECCCCcCCCCEEeEECCCCCC--CCCCEEEEEecccccCCCCcCCCCccceEEEeEEcCHHHhhhhh
Confidence            4556789999999999999999999999997443  457899999999886555   457789999999998  587655


Q ss_pred             c--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEec-CCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        202 D--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       202 ~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~-~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      .  ..+.+||++......+.|.|||||||++..       +|+||+||+ ..|...+.|++||||++|++||++++++
T Consensus        80 ~~~~~~~~iCa~~~~~~~~~C~GDsGgPL~~~g-------~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~~  150 (152)
T 2pka_B           80 PDKVTESMLCAGYLPGGKDTCMGDSGGPLICNG-------MWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTITE  150 (152)
T ss_dssp             SSBCCTTEEEEECTTSSCBCCTTCTTCEEEETT-------EEEEEECCCCSSTTCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             cCCCCCCEEeeccCCCCCcccCCccccceEECC-------EEEEEEecCCCCCCCCCCCeEEEEHHHHHHHHHHHhcc
Confidence            3  567899998655567899999999999842       499999999 6898778899999999999999999875

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=99.97  E-value=3.1e-32  Score=225.53  Aligned_cols=192  Identities=17%  Similarity=0.169  Sum_probs=136.4

Q ss_pred             CCCccceEEEEeeC---CeEEeEEEEee---CCEEEeccCCcCCCC----CceEEEEEeeeecccCCCCceEEeeeEEEE
Q psy10841         53 ELGAWPWLIALYRD---GFFHCGGVVLD---ESWVMTAAHCVDGFE----KHYFEVYAGMLRRFSFSPTEQVRPVSRIVM  122 (286)
Q Consensus        53 ~~~~~Pw~v~i~~~---~~~~C~GtLIs---~~~VLTaAhC~~~~~----~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~  122 (286)
                      ..++|||+++|+..   +.++|+||||+   ++||||||||+....    ...+.+++|..+...   ..+.+.|+++++
T Consensus         2 ~~~~~p~~g~l~~~~~~~~~~CgGslI~s~s~~~VLTAAHC~~~~~~~~~~~~~~v~~G~~~~~~---~~~~~~v~~~~~   78 (218)
T 3cp7_A            2 NPADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPAYDYGES---EHGVWAAEELVT   78 (218)
T ss_dssp             -CTTCTTEEEEEEEETTEEEEEEEEEBCCTTSCEEEECGGGTBCCTTCBBCEEEEEEETCSSSCC---TTCCEEEEEEEE
T ss_pred             CCCCCceEEEEEEEcCCCCeEEEEEEEecCCCCEEEEChHhcCcCCCCeeecCEEEECcccCCCC---CccEEEEEEEEE
Confidence            35799999999742   35889999999   999999999996542    145677777654321   234678999999


Q ss_pred             CCCCCC-CCCCCceEEEEecCc--cccCCcee-eeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeeccccc
Q psy10841        123 HSMFKR-AEMTNDLALLQLAAP--LRYNRYVR-PICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACK  198 (286)
Q Consensus       123 hp~y~~-~~~~~DiAllkL~~~--i~~~~~v~-picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~  198 (286)
                      ||+|+. ....+|||||||++|  +.|++.++ |++|+...   ..+..++++|||.+.....  ..+        ..|.
T Consensus        79 hp~y~~~~~~~~DiAll~L~~~~~~~~~~~v~~~~~l~~~~---~~g~~~~v~GwG~~~~~~~--~~l--------~~C~  145 (218)
T 3cp7_A           79 SAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFNQ---PRGQYYSAYGYPAAAPFNG--QEL--------HSCH  145 (218)
T ss_dssp             CHHHHHHCCGGGCCEEEEECCBTTBCHHHHHSCCBCBCCSC---CSSCEEEEEECCCSTTCCS--SSC--------EEEE
T ss_pred             CcccccCCCCcCCEEEEEEeCCCCcChhHhcCcccceeecC---CCCCEEEEEeCCCCCCCCC--cee--------eEee
Confidence            999974 456899999999999  78888898 99997522   3578899999997642111  111        2454


Q ss_pred             cc-cc-----CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHh
Q psy10841        199 HY-ED-----RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS  272 (286)
Q Consensus       199 ~~-~~-----~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~  272 (286)
                      .. +.     ....++|+.        |.|||||||++..   +++++|+||+|||.+|...   ..|  -.+|-+.+++
T Consensus       146 ~~~~~~~~~~~~~~~~Ca~--------~~GDSGGPlv~~~---~g~~~lvGIvS~G~gc~~~---~~~--~p~~~~~~~~  209 (218)
T 3cp7_A          146 GTATNDPMGSSTQGIPCNM--------TGGSSGGPWFLGN---GTGGAQNSTNSYGYTFLPN---VMF--GPYFGSGAQQ  209 (218)
T ss_dssp             EECEECTTSSSCEEEECCC--------CTTCTTCEEEESS---SSSSCEEEECCEEETTEEE---EEE--ECCCCHHHHH
T ss_pred             eeEEcCCCCCceEEecCCC--------CCCCcCCeeEEcc---CCCeEEEEEEccccCCCCC---cEE--cCcCCHHHHH
Confidence            32 11     122678872        5799999999863   5567899999999988641   222  2445577766


Q ss_pred             hhcc
Q psy10841        273 NSER  276 (286)
Q Consensus       273 ~~~~  276 (286)
                      ..+.
T Consensus       210 l~~~  213 (218)
T 3cp7_A          210 NYNY  213 (218)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6544

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=99.96  E-value=1.7e-29  Score=215.41  Aligned_cols=194  Identities=16%  Similarity=0.185  Sum_probs=136.6

Q ss_pred             CCCCccceEE--EEee---CCeEEeEEEEeeCCEEEeccCCcCCCCC--ceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         52 AELGAWPWLI--ALYR---DGFFHCGGVVLDESWVMTAAHCVDGFEK--HYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        52 a~~~~~Pw~v--~i~~---~~~~~C~GtLIs~~~VLTaAhC~~~~~~--~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      +..++|||++  +|..   .+.++|+|+||+++||||||||+.....  ..+.|++|..+......  ..+.+.+++.|+
T Consensus        12 ~~~~~~P~~~~v~l~~~~~~g~~~CgG~lI~~~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~--g~~~~~~i~~~~   89 (268)
T 1wcz_A           12 TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPN--GGFTAEQITKYS   89 (268)
T ss_dssp             SCTTSGGGTTEEEEEEEC-CCEEEEEEEECSSSEEEECHHHHGGGTTCGGGEEEEETCCBTTBCTT--CCEEEEEEEECS
T ss_pred             cCCCCCCccEEEEEEEEcCCCCEEEEEEEEECCEEEEChhhCCCccCCcceEEEEecccCcccccC--CcEEEEEEecCC
Confidence            5567888875  4543   3568999999999999999999965332  45888888765433222  246677888875


Q ss_pred             CCCCCCCCCceEEEEecCcc---ccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPL---RYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE  201 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i---~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~  201 (286)
                            ..+|||||||++++   .|+..++|+||+.. .....++.++++|||....     ..++......+..     
T Consensus        90 ------~~~DIALLkL~~~~~~~~~~~~v~pi~L~~~-~~~~~g~~v~v~Gwg~~~~-----~~~~~~~~g~i~~-----  152 (268)
T 1wcz_A           90 ------GEGDLAIVKFSPNEQNKHIGEVVKPATMSNN-AETQVNQNITVTGYPGDKP-----VATMWESKGKITY-----  152 (268)
T ss_dssp             ------SSSCCEEEEECCCTTSCCHHHHSCCCCBCCC-SSCCTTCEEEEEECCTTSS-----TTCEEEEEEEEEE-----
T ss_pred             ------CCCcEEEEEecCcccccccccccceeecccc-cccCCCCEEEEEECCCCCC-----CceEEeecceEEe-----
Confidence                  25899999999987   46778999999763 2345688999999996531     1223333222221     


Q ss_pred             cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhccccc
Q psy10841        202 DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERAKV  279 (286)
Q Consensus       202 ~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~~~~  279 (286)
                       ....++|.     ....|.|||||||++.      .+.|+||+|++..|+. + +.+++ +..|++||++.++...+
T Consensus       153 -~~~~~i~~-----~~~~c~GdSGGPLv~~------~g~lvGIvS~G~~~~~-~-~~~~~-~~~~~~wI~~~i~~~~~  215 (268)
T 1wcz_A          153 -LKGEAMQY-----DLSTTGGNSGSPVFNE------KNEVIGIHWGGVPNEF-N-GAVFI-NENVRNFLKQNIEDINF  215 (268)
T ss_dssp             -EETTEEEE-----SBCCCTTCTTCEEECT------TSCEEEEEEEEETTTE-E-EEEEC-CHHHHHHHHHHCTTCCB
T ss_pred             -eCCCeEEE-----ecccCCCCccCeEEcc------CCEEEEEEeCCccCCc-c-eeEEc-CHHHHHHHHHHHHhccc
Confidence             12446666     3578999999999942      2359999999988864 2 45554 68899999998866544

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=99.96  E-value=1e-28  Score=211.26  Aligned_cols=193  Identities=17%  Similarity=0.191  Sum_probs=134.6

Q ss_pred             CCCCccceEE--EEee---CCeEEeEEEEeeCCEEEeccCCcCCCCC--ceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         52 AELGAWPWLI--ALYR---DGFFHCGGVVLDESWVMTAAHCVDGFEK--HYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        52 a~~~~~Pw~v--~i~~---~~~~~C~GtLIs~~~VLTaAhC~~~~~~--~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      +...+|||++  +|..   .+.++|+|+||+++||||||||+.....  ..+.|++|..+......  ..+.+.+++.|+
T Consensus        12 ~~~~~~P~~~~v~i~~~~~~~~~~C~G~lI~~~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~--g~~~~~~i~~~~   89 (274)
T 2o8l_A           12 TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPN--GGFTAEQITKYS   89 (274)
T ss_dssp             SSTTSGGGTTEEEEEEEETTEEEEEEEEEEETTEEEECHHHHHTTTTCGGGEEEEETCCBTTBCTT--CCEEEEEEEECS
T ss_pred             cCCCCCCcceEEEEEEEcCCCCEEEEEEEEECCEEEEChhhCcccCCCcceEEEEecccCcccccC--ccEEEEEEEeCC
Confidence            4566778874  4543   3468999999999999999999965432  35788888765433222  246778888886


Q ss_pred             CCCCCCCCCceEEEEecCcc---ccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPL---RYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE  201 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i---~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~  201 (286)
                      .      .+|||||||++++   .|+..++|+||+.. .....++.++++|||.....     .++......+..     
T Consensus        90 ~------~~DIALLkL~~~~~~~~~~~~v~pi~L~~~-~~~~~g~~v~v~Gwg~~~~~-----~~~~~~~g~i~~-----  152 (274)
T 2o8l_A           90 G------EGDLAIVKFSPNEQNKHIGEVVKPATMSNN-AETQTNQNITVTGYPGDKPV-----ATMWESKGKITY-----  152 (274)
T ss_dssp             S------SSCCEEEEECCCTTSCCTTTSSCCCEECCC-TTCCTTCEEEEEECCTTSST-----TCEEEEEEEEEE-----
T ss_pred             C------CCcEEEEEecCccccccccccccccccccc-ccccCCCEEEEEECCCCCCC-----ceEEecCceEEe-----
Confidence            3      5899999999987   47888999999863 33566889999999965321     122222222211     


Q ss_pred             cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcccc
Q psy10841        202 DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERAK  278 (286)
Q Consensus       202 ~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~~~  278 (286)
                       ....++|.     ....|.|||||||++.      .+.|+||+|||..|.. + +.+++ ++.|++||++.++.-.
T Consensus       153 -~~~~~i~~-----~~~~c~GdSGGPLv~~------~g~lvGIvS~G~~~~~-~-~~~~~-~~~~~~wI~~~i~~~~  214 (274)
T 2o8l_A          153 -LKGEAMQY-----DLSTTGGNSGSPVFNE------KNEVIGIHWGGVPNEF-N-GAVFI-NENVRNFLKQNIEDIN  214 (274)
T ss_dssp             -EETTEEEE-----SCCCCTTCTTCEEECT------TSCEEEEEEEEETTTE-E-EEEEC-CHHHHHHHHHHCTTCE
T ss_pred             -cCCCeEEe-----CcccCCCCchhheecc------CCeEEEEEeCcccCCC-C-ceEEe-cHHHHHHHHHHHhhhc
Confidence             12345665     3578999999999942      2359999999988864 2 44444 7889999998876543

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=99.96  E-value=9.3e-30  Score=208.04  Aligned_cols=188  Identities=18%  Similarity=0.191  Sum_probs=123.8

Q ss_pred             eCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCC
Q psy10841         51 KAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAE  130 (286)
Q Consensus        51 ~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~  130 (286)
                      .+..++|||+|.+..   ++|+|+||+++||||||||+.+.......+.++....   ....+.+.+++++.+.   .  
T Consensus         7 i~~~~~~P~~v~~~~---~~c~G~lI~~~~VLTaaHcv~~~~~~~~~v~v~~~~~---~~~~~~~~~~~i~~~~---~--   75 (200)
T 2w7s_A            7 ITDATKEPYNSVVAF---VGGTGVVVGKNTIVTNKHIAKSNDIFKNRVSAHHSSK---GKGGGNYDVKDIVEYP---G--   75 (200)
T ss_dssp             ESCTTSTTGGGEEEE---TTEEEEEEETTEEEECHHHHHHHHHTTCCEEETCCSS---SCCCCEECEEEEEECS---S--
T ss_pred             eeccccCCccccccc---ceEEEEEEECCEEEEChhhcCCcccCCcEEEEEecCc---cCCCcEEEEEEEecCC---C--
Confidence            467889999998853   5799999999999999999854221112344432211   1233456666665432   2  


Q ss_pred             CCCceEEEEecCc----cccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccccCCCC
Q psy10841        131 MTNDLALLQLAAP----LRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIAD  206 (286)
Q Consensus       131 ~~~DiAllkL~~~----i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~  206 (286)
                       .+|||||||+.+    +.|++.++|+||+.   ....++.++++||+.......    .+.....+++.+      ...
T Consensus        76 -~~DiAll~l~~~~~~~~~~~~~v~pi~l~~---~~~~g~~v~v~G~p~g~~~~~----~~~~~~g~v~~~------~~~  141 (200)
T 2w7s_A           76 -KEDLAIVHVHETSTEGLNFNKNVSYTKFAD---GAKVKDRISVIGYPKGAQTKY----KMFESTGTINHI------SGT  141 (200)
T ss_dssp             -SSSCEEEEECSBCTTSCBGGGSCCCCCBCC---CCCTTCEEEEEECTTHHHHTS----CEEEEEEEEEEE------ETT
T ss_pred             -cceEEEEEECCCCCCcccccccccceeccc---cCCCCCEEEEEECCCCCCCcc----ceEEeEEEEEcc------CCC
Confidence             589999999985    88888999999973   345678999999853211110    123334444332      134


Q ss_pred             EEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCC-CCCCCee-EEeCCCcHHHHHhhhcc
Q psy10841        207 VICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCA-RPNEPGV-YTRVSQFVPWLMSNSER  276 (286)
Q Consensus       207 ~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~-~~~~p~v-~t~v~~~~~WI~~~~~~  276 (286)
                      ++|..     ...|.|||||||++..      ..|+||++++..|+ ....+.+ |+  +.|++||++++++
T Consensus       142 ~~~~~-----~~~~~GdSGGPl~~~~------g~lvGI~s~g~~~~~~~~~~~v~~~--~~~~~wI~~~~~~  200 (200)
T 2w7s_A          142 FMEFD-----AYAQPGNSGSPVLNSK------HELIGILYAGSGKDESEKNFGVYFT--PQLKEFIQNNIEK  200 (200)
T ss_dssp             EEEEC-----SCCCTTCTTCEEECTT------SCEEEEEEEEC----CCCEEEEECC--HHHHHHHHHTSCC
T ss_pred             EEEEc-----ceeCCCCccCeEECcC------CEEEEEEeccccCCCCccceeeecH--HHHHHHHHhhccC
Confidence            56653     4789999999999421      24999999998774 2122356 55  8899999998863

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=99.96  E-value=7.2e-29  Score=203.23  Aligned_cols=186  Identities=13%  Similarity=0.222  Sum_probs=125.2

Q ss_pred             eCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCC-ceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCC
Q psy10841         51 KAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRA  129 (286)
Q Consensus        51 ~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~-~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~  129 (286)
                      .+..++|||+|.+..   .+|+|+||+++||||||||+..... ..+.+..+   . . ......+.+.+++.|+     
T Consensus         7 ~~~~~~~P~~~~~~~---~~c~G~lI~~~~VLTaaHcv~~~~~~~~v~v~~~---~-~-~~~~~~~~~~~i~~~~-----   73 (204)
T 2vid_A            7 VKDTNIFPYTGVVAF---KSATGFVVGKNTILTNKHVSKNYKVGDRITAHPN---S-D-KGNGGIYSIKKIINYP-----   73 (204)
T ss_dssp             CSCTTSTTGGGEEEC---SSCEEEEEETTEEEECHHHHTTCCTTCEEEESCC---S-S-SCCSCEEEEEEEEECS-----
T ss_pred             eccCCcCchhheEEe---eeEEEEEEECCEEEEChhHCCCccCCceEEEEec---c-c-cCCCcEEEeeEEecCC-----
Confidence            467889999997653   4799999999999999999965432 23333211   1 1 1233456777777765     


Q ss_pred             CCCCceEEEEecC--------ccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccc
Q psy10841        130 EMTNDLALLQLAA--------PLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE  201 (286)
Q Consensus       130 ~~~~DiAllkL~~--------~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~  201 (286)
                       ..+|||||||+.        ++.|++.++|+||+.   ....++.++++|||.....   ...+ ......+..     
T Consensus        74 -~~~DiAll~l~~~~~~~~~~~~~~~~~v~pi~l~~---~~~~g~~~~~~G~g~~~~~---~~~~-~~~~g~v~~-----  140 (204)
T 2vid_A           74 -GKEDVSVIQVEERAIERGPKGFNFNDNVTPFKYAA---GAKAGERIKVIGYPHPYKN---KYVL-YESTGPVMS-----  140 (204)
T ss_dssp             -SSSCCEEEEECSEEEEEETTEEEHHHHCCCCCBCS---CCCTTCEEEEEECCCCCC-----CCC-EEEEEEEEE-----
T ss_pred             -CCCeEEEEEEcCcccccccccccccccccccccCC---cCCCCCEEEEEeCCCCCCC---Ccce-EeeccEEee-----
Confidence             257999999985        577778899999974   3456789999999965321   1111 111111111     


Q ss_pred             cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCC---CCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        202 DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG---CARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       202 ~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~---c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                       ....++|..     ...|.|||||||++.      .+.|+||++++..   |...++ .+|.. +.|++||++++++
T Consensus       141 -~~~~~~~~~-----~~~~~GdSGGPl~~~------~g~lvGI~s~g~~~~~~~~~~~-~~~~~-~~~~~wI~~~~~~  204 (204)
T 2vid_A          141 -VEGSSIVYS-----AHTESGNSGSPVLNS------NNELVGIHFASDVKNDDNRNAY-GVYFT-PEIKKFIAENIDK  204 (204)
T ss_dssp             -EETTEEEEC-----CCCCGGGTTCEEECT------TSCEEEEEEEECC---CCCCEE-EECCC-HHHHHHHHHHSCC
T ss_pred             -ccCCeEEEe-----cccCCCCccCcEECC------CCeEEEEEecCccCCCcccccc-eeEeC-HHHHHHHHhhcCC
Confidence             124567763     478999999999942      2359999999973   544333 34334 8899999998763

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=99.95  E-value=2.1e-28  Score=205.81  Aligned_cols=193  Identities=13%  Similarity=0.157  Sum_probs=132.5

Q ss_pred             eCCCCccceEE--EEeeCCeEEeEEEEeeCCEEEeccCCcCCCCC--ceEEEEEeeeecccCC--CCceEEeeeEEEECC
Q psy10841         51 KAELGAWPWLI--ALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK--HYFEVYAGMLRRFSFS--PTEQVRPVSRIVMHS  124 (286)
Q Consensus        51 ~a~~~~~Pw~v--~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~--~~~~v~~g~~~~~~~~--~~~~~~~v~~~~~hp  124 (286)
                      ++..++|||++  ++...+.++|+|+||+++||||||||+.+...  ..+.+..|........  ...+.+.++.+..||
T Consensus        35 ~a~~~~~p~~~~v~i~~~~~~~c~G~lI~~~~VLTAaHcv~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~i~~~~  114 (242)
T 1agj_A           35 EKDRQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEP  114 (242)
T ss_dssp             TTGGGSTTGGGEEEEEETTTEEEEEEECSSSEEEECHHHHGGGTTCGGGEEEEETCEECTTSCEECTTCCEEEEEEESCT
T ss_pred             cccccccccceEEEEEECCCccEEEEEEeCCEEEEChhhcccCCCCceEEEEecCccccccccccccCCceeEEEEEeCC
Confidence            46667899985  55555678999999999999999999965433  2344444654432110  011456778888899


Q ss_pred             CCCCCCCCCceEEEEecCccc---cCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLR---YNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE  201 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~---~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~  201 (286)
                       |+   ..+|||||||+.++.   |++.++|+||+.. .....++.++++|||.....    ..++...+.+.+.     
T Consensus       115 -~~---~~~DiAll~l~~~~~~~~~~~~v~~i~L~~~-~~~~~g~~~~v~Gwg~~~~~----~~l~~~~~~~~~~-----  180 (242)
T 1agj_A          115 -FG---AGVDLALIRLKPDQNGVSLGDKISPAKIGTS-NDLKDGDKLELIGYPFDHKV----NQMHRSEIELTTL-----  180 (242)
T ss_dssp             -TC---TTSCCEEEEECCCTTSCCHHHHSCCCEECCS-TTCCTTCEEEEEECCTTTST----TCCEEEEEEECCG-----
T ss_pred             -CC---CCCcEEEEEEcCCCccccccccccceecCcc-ccCCCCCEEEEEeCCCCCCC----ccceeeeeeEecC-----
Confidence             75   468999999999964   6677999999863 33567889999999976332    2355555554431     


Q ss_pred             cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCC-CCCCCeeEEeCCCcHHHHH
Q psy10841        202 DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCA-RPNEPGVYTRVSQFVPWLM  271 (286)
Q Consensus       202 ~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~-~~~~p~v~t~v~~~~~WI~  271 (286)
                         ...++.     ....|.|||||||++.      ...|+||+||+.+|. ......+.+.|...+.|+.
T Consensus       181 ---~~~~~~-----~~~~c~GdSGGPl~~~------~g~lvGI~s~g~~c~~~~~~~~~~~~i~~~~~~~l  237 (242)
T 1agj_A          181 ---SRGLRY-----YGFTVPGNSGSGIFNS------NGELVGIHSSKVSHLDREHQINYGVGIGNYVKRII  237 (242)
T ss_dssp             ---GGSEEE-----ECCCCGGGTTCEEECT------TSEEEEEEEEEEECSSTTCEEEEEEECCHHHHHHH
T ss_pred             ---CceEEE-----eCCcCCCCCchHhccc------CCEEEEEEeccccccCcCCCceeeEEehHHHHHHH
Confidence               112332     1368999999999942      236999999999886 3334578889986555543

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=99.95  E-value=1e-27  Score=203.34  Aligned_cols=179  Identities=21%  Similarity=0.260  Sum_probs=116.3

Q ss_pred             EEEeeCCeEEeEEEEeeC------CEEEeccCCcCCC--CCceEEEEEeeeecccCC-----------CCceEEeeeEEE
Q psy10841         61 IALYRDGFFHCGGVVLDE------SWVMTAAHCVDGF--EKHYFEVYAGMLRRFSFS-----------PTEQVRPVSRIV  121 (286)
Q Consensus        61 v~i~~~~~~~C~GtLIs~------~~VLTaAhC~~~~--~~~~~~v~~g~~~~~~~~-----------~~~~~~~v~~~~  121 (286)
                      ++|..++.++|+|+||++      +||||||||+...  ....+.|.++.....-..           .......+..++
T Consensus        26 ~rl~~~g~~~CGGSLI~~~~~~~~~~VLTAAHCv~~~~~~~~~~~v~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~i  105 (268)
T 1arb_A           26 GAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPNTPASGANGDGSMSQTQSGSTV  105 (268)
T ss_dssp             EEEEETTEEEEEEEEBCCTTCCCCCEEEEEGGGSCCSHHHHHTCEEEESCCCSSCCCTTSGGGGSCCCCCCCCEEECEEE
T ss_pred             EEEEeCCccEEeEEEEcCCCCCCCCEEEEcHHhCCCccCcceEEEEEeCCCCCccccccccccccccCCcceEEeccceE
Confidence            677778889999999998      6999999998653  223456666532211000           011123367788


Q ss_pred             ECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCC-------CccceeEeeeec
Q psy10841        122 MHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPD-------PDHMREVQVPIL  194 (286)
Q Consensus       122 ~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~-------~~~l~~~~~~~~  194 (286)
                      +|+.     ..+|||||||+++++                  .+..+++.|||.+......       ...++++.+...
T Consensus       106 ~h~~-----~~nDIALLrL~~~v~------------------~~~~~~vsGWG~t~~~~~~~~~~~~~~~~l~~i~~~~~  162 (268)
T 1arb_A          106 KATY-----ATSDFTLLELNNAAN------------------PAFNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTS  162 (268)
T ss_dssp             EEEE-----TTTTEEEEEESSCCC------------------GGGCCEEBCEECCSCCCSCEEEEECGGGCSCEEEEECS
T ss_pred             ecCC-----CCCceEEEEecCCCC------------------CCCceEEeCcCccCCCCCcceeeccCCcccEEEEeecc
Confidence            8983     469999999998742                  1235789999988644321       113444444433


Q ss_pred             ccccccc--cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCCCC--CCCeeEEeCCCcHH
Q psy10841        195 PACKHYE--DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARP--NEPGVYTRVSQFVP  268 (286)
Q Consensus       195 ~~c~~~~--~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~~~--~~p~v~t~v~~~~~  268 (286)
                      ..-...+  ...+.++|++......++|.|||||||++.      .++|+||+|||. .|...  ++|+||+||+.|.+
T Consensus       163 ~~~~~~~~~~~~~~~iCag~~~~~gdtC~gdsGgPl~~~------~~~~~Gi~s~g~~~C~~~~~~~p~vyt~v~~~~~  235 (268)
T 1arb_A          163 PTSFVAWGGGAGTTHLNVQWQPSGGVTEPGSSGSPIYSP------EKRVLGQLHGGPSSCSATGTNRSDQYGRVFTSWT  235 (268)
T ss_dssp             CCEEECTTSSSCSSEEEEECCTTSCCCCTTCTTCEEECT------TSCEEEEEEECSCCTTCCGGGSEEEEEEHHHHHH
T ss_pred             ccccccccccccCCeEEEeeecCCCCCccCcccCCcEee------CCEEEEEEeecCcccCCCCCCCCceEEEeeeeec
Confidence            2100111  244789999742112369999999999962      235999999997 68865  38999999976643

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=99.91  E-value=9.6e-25  Score=183.84  Aligned_cols=168  Identities=16%  Similarity=0.178  Sum_probs=115.0

Q ss_pred             CCCCccceEEE--EeeCCeEEeEEEEeeCCEEEeccCCcCCCCC--ceEEEEEeeeeccc---CCCCceEEeeeEEEECC
Q psy10841         52 AELGAWPWLIA--LYRDGFFHCGGVVLDESWVMTAAHCVDGFEK--HYFEVYAGMLRRFS---FSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        52 a~~~~~Pw~v~--i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~--~~~~v~~g~~~~~~---~~~~~~~~~v~~~~~hp  124 (286)
                      +..++|||++.  +...+.++|+|+||+++||||||||+.+...  ..+.+..|......   .......+.++.+..||
T Consensus        29 ~~~~~~P~~~~~~i~~~~~~~c~G~lI~~~~VLTAaHcv~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~i~~hp  108 (246)
T 1qtf_A           29 TDNARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESP  108 (246)
T ss_dssp             SCCSSTTGGGEEEEEETTTEEEEEEEEETTEEEECHHHHGGGTTCGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESCT
T ss_pred             hhcCcCchhcEEEEEECCCceEEEEEEECCEEEECHHhCCCCCCCceEEEEecCccccccccccccCCceEEEEEEEeCC
Confidence            45678999964  4456678999999999999999999965443  45677777543321   00011467788889999


Q ss_pred             CCCCCCCCCceEEEEecCcc---ccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPL---RYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE  201 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i---~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~  201 (286)
                       |+   ..+|||||||+.++   .|+..++|+||+... ....++.++++||+.....    ..+....+.+.+.     
T Consensus       109 -~~---~~~DiALLkl~~~~~~~~~~~~v~~i~L~~~~-~~~~g~~v~v~G~p~g~~~----~~~~~~~~~~~~~-----  174 (246)
T 1qtf_A          109 -YG---QGLDLAIIKLKPNEKGESAGDLIQPANIPDHI-DIAKGDKYSLLGYPYNYSA----YSLYQSQIEMFND-----  174 (246)
T ss_dssp             -TC---TTSCCEEEEECCCTTSCCHHHHSCCCCCCSSC-CCCTTCEEEEEECCTTTST----TCCEEEEEEESSS-----
T ss_pred             -CC---CCCCEEEEEEeCCccccccccceeeeecCCcc-ccCCCCEEEEEECCCCCCC----ceeEeeeeeecCc-----
Confidence             64   46899999999998   566779999998643 3467889999999643221    1122223333220     


Q ss_pred             cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCC
Q psy10841        202 DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG  250 (286)
Q Consensus       202 ~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~  250 (286)
                          .       ......|.|||||||+..    +  ..|+||++++..
T Consensus       175 ----~-------~~~~~~~~GdSGGPlv~~----~--g~lvGI~s~g~~  206 (246)
T 1qtf_A          175 ----S-------QYFGYTEVGNSGSGIFNL----K--GELIGIHSGKGG  206 (246)
T ss_dssp             ----S-------BEESCCCGGGTTCEEECT----T--CCEEEEEEEEET
T ss_pred             ----E-------EEeCCCCCCCchhheECC----C--CEEEEEEecccc
Confidence                0       012367999999999942    1  249999999864

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=99.91  E-value=4.9e-24  Score=175.29  Aligned_cols=183  Identities=12%  Similarity=0.158  Sum_probs=119.5

Q ss_pred             CCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCC-ceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCC
Q psy10841         52 AELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAE  130 (286)
Q Consensus        52 a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~-~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~  130 (286)
                      +..++|||+|.+..   .+|+|+||+++||||||||+.+... ..+.|.++..     ....+.+.+.+++.+   +.  
T Consensus         9 ~~~~~~P~~v~~~~---~~c~G~lI~~~~VLTaaHcv~~~~~~~~i~v~~~~~-----~~~g~~~~~~~v~~~---~~--   75 (210)
T 2as9_A            9 KDTNNFPYNGVVSF---KDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGD-----KGNGGIYKIKSISDY---PG--   75 (210)
T ss_dssp             SCTTSTTGGGEEEC---SSCEEEEEETTEEEECHHHHHHCCTTCEEEESCCGG-----GCCSCEEEEEEEEEC---SS--
T ss_pred             ecCCcCCeEEEEEe---eeEEEEEEeCCEEEECHhHCCccCCCCEEEEEeCcc-----cCCCCEEEEEEEEeC---CC--
Confidence            45789999997752   5799999999999999999864332 3455544421     113345666666653   22  


Q ss_pred             CCCceEEEEecC--------ccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeeccccccccc
Q psy10841        131 MTNDLALLQLAA--------PLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYED  202 (286)
Q Consensus       131 ~~~DiAllkL~~--------~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~~  202 (286)
                       .+|||||||+.        ++.|++.++|++|+.   ....++.++++||+......   ..+ .....+++.-     
T Consensus        76 -~~DiAll~l~~~~~~~~~~~~~~~~~v~~i~l~~---~~~~g~~v~v~G~p~~~~~~---~~l-~~~~g~v~~~-----  142 (210)
T 2as9_A           76 -DEDISVMNIEEQAVERGPKGFNFNENVQAFNFAK---DAKVDDKIKVIGYPLPAQNS---FKQ-FESTGTIKRI-----  142 (210)
T ss_dssp             -SSSCEEEEECSEEEEEETTEEEGGGSCCCCCBCS---CCCTTCEEEEEECSSTTTTT---SCC-EEEEEEEEEE-----
T ss_pred             -CCcEEEEEecCccccccccccccccccceeecCC---CCCCCCEEEEEeCCCCCCCC---cce-EEeeeEEccc-----
Confidence             58999999987        688888999999963   35667899999998642211   112 3333333321     


Q ss_pred             CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeC-CCcHHHHHhh
Q psy10841        203 RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRV-SQFVPWLMSN  273 (286)
Q Consensus       203 ~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v-~~~~~WI~~~  273 (286)
                       ...++|..     ...|.|||||||++..    +  .|+||++++........ ..|+.+ ....+|++..
T Consensus       143 -~~~~i~~~-----~~~~~GdSGGPlv~~~----g--~lvGI~s~g~~~~~~~~-~~~~~~~~~i~~f~~~~  201 (210)
T 2as9_A          143 -KDNILNFD-----AYIEPGNSGSPVLNSN----N--EVIGVVYGGIGKIGSEY-NGAVYFTPQIKDFIQKH  201 (210)
T ss_dssp             -ETTEEEEE-----CCCCTTCTTCEEECTT----S--CEEEEECCSCCCTTCSS-EEEEECCHHHHHHHHTT
T ss_pred             -cCCeEEEc-----CccCCCCccCcEECCC----C--eEEEEEecccccCCccc-cccEEEcHHHHHHHHHh
Confidence             13567774     3689999999999521    2  39999999875322122 235554 3344555544

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=99.91  E-value=1.7e-25  Score=180.39  Aligned_cols=168  Identities=18%  Similarity=0.240  Sum_probs=111.2

Q ss_pred             eEEeE-EEEeeC---CEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecC-
Q psy10841         68 FFHCG-GVVLDE---SWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAA-  142 (286)
Q Consensus        68 ~~~C~-GtLIs~---~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~-  142 (286)
                      ...|+ |.++..   +||||||||+....  .+.+..+         ..+..  .. ..+.+|    ..+|||||||++ 
T Consensus        11 ~~~ct~Gf~v~~~~~~~ilTaaHcv~~~~--~~~v~~~---------~~~~~--g~-~~~~~~----~~~DiAll~l~~~   72 (185)
T 2qa9_E           11 TGRCSLGFNVRSGSTYYFLTAGHCTDGAT--TWWANSA---------RTTVL--GT-TSGSSF----PNNDYGIVRYTNT   72 (185)
T ss_dssp             SCEEECCEEEEETTEEEEEECHHHHTTCS--EEESSTT---------SCSEE--EE-EEEEEC----SBSCEEEEEECCS
T ss_pred             CCcEeccEEEEECCceEEEECcccCCCCC--cEEecCC---------CceEe--EE-Eecccc----CCCCEEEEEecCC
Confidence            35799 888874   69999999996532  2222110         11111  11 122222    358999999998 


Q ss_pred             ccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc-cccccccCCCCEEEEeeCCCCCCCCC
Q psy10841        143 PLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP-ACKHYEDRIADVICAGMPQGGRDTCQ  221 (286)
Q Consensus       143 ~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~-~c~~~~~~~~~~~C~~~~~~~~~~c~  221 (286)
                      ++.|++.++|++|+.. ..+..++.+.++||+..    .....++...+.+.. +|.........++|         .|+
T Consensus        73 ~~~~~~~v~~~~l~~~-~~~~~g~~v~~~Gw~~~----~~~g~l~~~~~~v~~~~~~~~~~~~~~~~c---------ac~  138 (185)
T 2qa9_E           73 TIPKDGTVGGQDITSA-ANATVGMAVTRRGSTTG----THSGSVTALNATVNYGGGDVVYGMIRTNVC---------AEP  138 (185)
T ss_dssp             SSCCCCEETTEECCEE-CCCCTTCEEEEEETTTE----EEEEEEEEEEEEEECSTTCEEEEEEEESCC---------CCT
T ss_pred             CccccCccceeeeCCc-ccCCCCCEEEEecCCCc----eeEeEEEEEEEEEEcCCCCEEeceEEeccc---------CCC
Confidence            8999999999999742 34566889999999632    223455665555422 22211111122333         399


Q ss_pred             CCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhh
Q psy10841        222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNS  274 (286)
Q Consensus       222 gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~  274 (286)
                      |||||||++.     +  .++||+||+..|+..+.|++|++|+.|++||+..+
T Consensus       139 GDSGGPlv~~-----~--~~vGI~s~g~~~~~~~~p~vyt~v~~~~~wI~~~l  184 (185)
T 2qa9_E          139 GDSGGPLYSG-----T--RAIGLTSGGSGNCSSGGTTFFQPVTEALSAYGVSV  184 (185)
T ss_dssp             TCTTCEEEET-----T--EEEEEEEEEEEETTTEEEEEEEEHHHHHHHHTCEE
T ss_pred             CCccceEEEC-----C--EEEEEEEecCCCCCCCCcEEEEEHHHHHHhhCcEE
Confidence            9999999953     2  69999999987766678999999999999997643

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A

Probab=99.89  E-value=6.5e-23  Score=142.29  Aligned_cols=79  Identities=35%  Similarity=0.720  Sum_probs=69.6

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|.|+..+.++|+|+||+++||||||||+..    ...|++|..+........+.+.|+++++||+
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGslIs~~~VLTAAHC~~~----~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~   76 (80)
T 2pka_A            1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCKND----NYEVWLGRHNLFENENTAQFFGVTADFPHPG   76 (80)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCCS----CCEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCCCcEEEEEECCceEEEEEEEcCCEEEECHHHCCC----CcEEEEeeeEcCCCCCCcEEEEEEEEEECcC
Confidence            689999999999999999888889999999999999999999954    3468999888765555668899999999999


Q ss_pred             CCC
Q psy10841        126 FKR  128 (286)
Q Consensus       126 y~~  128 (286)
                      |+.
T Consensus        77 y~~   79 (80)
T 2pka_A           77 FNL   79 (80)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            975

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...

Probab=99.84  E-value=7.8e-21  Score=136.64  Aligned_cols=90  Identities=39%  Similarity=0.882  Sum_probs=77.4

Q ss_pred             CCccceeEeeeecc--ccccccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCC
Q psy10841        182 DPDHMREVQVPILP--ACKHYED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEP  257 (286)
Q Consensus       182 ~~~~l~~~~~~~~~--~c~~~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p  257 (286)
                      .+..|+++.+++++  +|+..+.  ..+.+||++  ....+.|.|||||||++..   +++|+|+||+||+..|+..+.|
T Consensus         3 ~~~~L~~~~v~i~~~~~C~~~~~~~i~~~~iCa~--~~~~~~C~GDSGGPL~~~~---~~~~~l~GIvS~g~~c~~~~~p   77 (97)
T 1yph_E            3 TPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAG--ASGVSSCMGDSGGPLVCKK---NGAWTLVGIVSWGSSTCSTSTP   77 (97)
T ss_dssp             CCSBCEEEEEEBCCHHHHHHHHGGGCCTTEEEEE--CSSCBCCTTCTTCEEEEEE---TTEEEEEEEEEECCTTCCTTSE
T ss_pred             cCccceEEEEEECCHHHhhHHhcCCCCCceEeec--CCCCCCCcCCCCCcEEEEe---CCeEEEEEEEEeCCCCCCCCCC
Confidence            35679999999998  5876553  678899998  3456899999999999976   6799999999999988877889


Q ss_pred             eeEEeCCCcHHHHHhhhcc
Q psy10841        258 GVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       258 ~v~t~v~~~~~WI~~~~~~  276 (286)
                      ++||||++|++||+++++.
T Consensus        78 ~vyt~V~~y~~WI~~~~~~   96 (97)
T 1yph_E           78 GVYARVTALVNWVQQTLAA   96 (97)
T ss_dssp             EEEEEHHHHHHHHHHHHHH
T ss_pred             eEEEEHHHhHHHHHHHHcc
Confidence            9999999999999998864

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=99.82  E-value=1.5e-21  Score=156.77  Aligned_cols=158  Identities=17%  Similarity=0.187  Sum_probs=104.6

Q ss_pred             eEEeE-EEEee---CCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCc
Q psy10841         68 FFHCG-GVVLD---ESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAP  143 (286)
Q Consensus        68 ~~~C~-GtLIs---~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~  143 (286)
                      ...|+ |.+|+   ++||||||||+....    .+.+|..+.                  +.|    ..+|||||||+++
T Consensus        11 ~~~ct~G~~v~~~~~~~vlTaaHc~~~~~----~~~~G~~~~------------------~~~----~~~DiAlikl~~~   64 (181)
T 2sga_A           11 GSRCSLGFNVSVNGVAHALTAGHCTNISA----SWSIGTRTG------------------TSF----PNNDYGIIRHSNP   64 (181)
T ss_dssp             TEEEECCEEEEETTEEEEEECHHHHTTCS----EETTEEEEE------------------EEC----SBSCEEEEEESCG
T ss_pred             CCcEeccEEEEECCceEEEECcccCCCCC----ceeecceeC------------------CcC----CCCCEEEEEccCC
Confidence            35799 99998   689999999986432    233343210                  111    2479999999999


Q ss_pred             cccCCceeee----ecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc-cccccccCCCCEEEEeeCCCCCC
Q psy10841        144 LRYNRYVRPI----CLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP-ACKHYEDRIADVICAGMPQGGRD  218 (286)
Q Consensus       144 i~~~~~v~pi----cL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~-~c~~~~~~~~~~~C~~~~~~~~~  218 (286)
                      +.++..++++    +++.....+..++.+.+.||....    ....++...+.+.. ++..    ...+++.     ..-
T Consensus        65 ~~~~~~v~~i~~~~~~~~~~~~~~~G~~v~~~G~~~~~----t~G~v~~~~~~v~~~~~~~----~~~~i~~-----~~c  131 (181)
T 2sga_A           65 AAADGRVYLYNGSYQDITTAGNAFVGQAVQRSGSTTGL----RSGSVTGLNATVNYGSSGI----VYGMIQT-----NVC  131 (181)
T ss_dssp             GGCCCEEECSSSCEEECCEECCCCTTCEEEEEETTTEE----EEEEEEEEEEEEECGGGCE----EEEEEEE-----SCC
T ss_pred             CcccceEEecCCcceeecccccCCCCCEEEEeecCCCc----cEEEEEEeEEEEECCCCCE----EeeeEec-----ccc
Confidence            9888889988    776544556778889888886321    11234444444311 1110    1112322     123


Q ss_pred             CCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHH
Q psy10841        219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLM  271 (286)
Q Consensus       219 ~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~  271 (286)
                      .|+|||||||++..       .++||++++..|+..+.|++|++|+.|++|+.
T Consensus       132 ~~~GDSGGPlv~~~-------~~vGI~s~g~~~~~~~~~~v~~~v~~~~~~l~  177 (181)
T 2sga_A          132 AQPGDSGGSLFAGS-------TALGLTSGGSGNCRTGGTTFYQPVTEALSAYG  177 (181)
T ss_dssp             CCTTCTTCEEEETT-------EEEEEEEEEEEETTTEEEEEEEEHHHHHHHHT
T ss_pred             cCCCCCCCEEEECC-------EEEEEEEeeCCCCcCCCceEEEEHHHHHHhcC
Confidence            46899999999532       59999999975333356999999999999984

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=99.75  E-value=3e-17  Score=137.20  Aligned_cols=179  Identities=21%  Similarity=0.225  Sum_probs=109.8

Q ss_pred             CccceEEEEeeCC-----eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCC
Q psy10841         55 GAWPWLIALYRDG-----FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRA  129 (286)
Q Consensus        55 ~~~Pw~v~i~~~~-----~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~  129 (286)
                      .-.|.+|.|....     ...|+|+||+++||||+|||+.+.  ..+.|.++.          ..+..+.+..|+     
T Consensus        39 ~~~~svV~I~~~~~~~~~~~~GsG~iI~~~~VlTaaH~v~~~--~~~~V~~~~----------~~~~~~~v~~~~-----  101 (237)
T 3k6y_A           39 ATEPSVVKIRSLAPRCQKVLEGTGFVISPDRVMTNAHVVAGS--NNVTVYAGD----------KPFEATVVSYDP-----  101 (237)
T ss_dssp             HHGGGEEEEEEEEGGGTEEEEEEEEEEETTEEEECGGGTTTC--SEEEEEETT----------EEEECEEEEEET-----
T ss_pred             HhcCCEEEEEEEecCCCcceeEEEEEEECCEEEECHHHcCCC--ceEEEEECC----------cEEEEEEEEEcC-----
Confidence            4568999996432     568999999999999999999653  456666652          244455555565     


Q ss_pred             CCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccccccCCCCE
Q psy10841        130 EMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRIADV  207 (286)
Q Consensus       130 ~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~~~~~~~  207 (286)
                        .+|||||||+     +..++|++|+.  .....++.++++||+.....     .+....+....  .|...+.... .
T Consensus       102 --~~DiAll~l~-----~~~~~~~~l~~--~~~~~G~~v~v~G~p~g~~~-----~~~~g~v~~~~~~~~~~~~~~~~-~  166 (237)
T 3k6y_A          102 --SVDVAILAVP-----HLPPPPLVFAA--EPAKTGADVVVLGYPGGGNF-----TATPARIREAIRLSGPDIYGDPE-P  166 (237)
T ss_dssp             --TTTEEEEECT-----TCCSCCCCBCS--SCCCTTCEEEEEECGGGCSC-----EEEEEEEEEEEEEEECCTTCCSS-C
T ss_pred             --CCCEEEEEeC-----CCCCCceecCC--CCCCCCCEEEEEECCCCCCC-----ccceeEEEeeEeecccccccCCC-c
Confidence              3799999998     34578999973  45667899999999754211     11111111111  1222211111 0


Q ss_pred             EEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhh
Q psy10841        208 ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN  273 (286)
Q Consensus       208 ~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~  273 (286)
                      .|......+...|.|||||||+..    ++  .|+||++++..-..  .......+....+||++.
T Consensus       167 ~~~~~~~~~~~~~~GdSGGPLv~~----~G--~vvGI~s~~~~~~~--~~~~aip~~~v~~~l~~~  224 (237)
T 3k6y_A          167 VTRDVYTIRADVEQGDSGGPLIDL----NG--QVLGVVFGAAIDDA--ETGFVLTAGEVAGQLAKI  224 (237)
T ss_dssp             EEEEEEEEESCCCTTCTTCEEECT----TS--CEEEEEEEECSSST--TEEEEEEHHHHHGGGGGT
T ss_pred             ccccEEEecCccCCCccHHHEECC----CC--EEEEEEEeeccCCC--cEEEEEEHHHHHHHHHHc
Confidence            121111123468999999999942    12  39999998763221  134456666666666555

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=99.72  E-value=1.5e-16  Score=138.92  Aligned_cols=190  Identities=17%  Similarity=0.150  Sum_probs=112.2

Q ss_pred             ccceEEEEee---CCeEEeEEEEeeC-CEEEeccCCcCCCC-------CceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         56 AWPWLIALYR---DGFFHCGGVVLDE-SWVMTAAHCVDGFE-------KHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        56 ~~Pw~v~i~~---~~~~~C~GtLIs~-~~VLTaAhC~~~~~-------~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      -.|++|.|..   .....|+|+||++ .||||+|||+.+..       ...+.|.++.         .+.+.++ ++ + 
T Consensus        15 ~~~svV~I~~~~~~~~~~gsG~iI~~~g~ILT~aHvv~~~~~~~~~~~~~~i~V~~~~---------g~~~~a~-vv-~-   82 (324)
T 1y8t_A           15 VVPSVVMLETDLGRQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSD---------GRTAPFT-VV-G-   82 (324)
T ss_dssp             HGGGEEEEEEEC----CEEEEEECCTTSEEEEEHHHHTTCC--------CEEEEEETT---------CCEECEE-EE-E-
T ss_pred             hcCcEEEEEEEccCCCceEEEEEEeCCCEEEEChHHcCCcccccccCCceEEEEEeCC---------CCEEEEE-EE-E-
Confidence            4699999975   2457899999998 69999999997543       1356666641         2233333 22 2 


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccc-cccccC
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPAC-KHYEDR  203 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c-~~~~~~  203 (286)
                       |+   ..+|||||||+.+    ..+.|++|+.. .....++.++++||............+......+...- ......
T Consensus        83 -~d---~~~DlAllkl~~~----~~~~~~~l~~~-~~~~~G~~v~~~G~p~g~~~~~~~G~vs~~~~~~~~~~~~g~~~~  153 (324)
T 1y8t_A           83 -AD---PTSDIAVVRVQGV----SGLTPISLGSS-SDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTGEAGNQNT  153 (324)
T ss_dssp             -CC---TTTTEEEEEECSC----CSCCCCEECCS-TTCCTTCEEEEEECGGGCTTEEEEEEEEEEEEEECC-------CC
T ss_pred             -eC---CCCCEEEEEECCC----CCCceEEecCc-ccCCCCCEEEEEEcCCCCCCcEeeeEEeecccccccccccCcccc
Confidence             22   3589999999976    34788999763 34567899999999532111000000000000000000 000012


Q ss_pred             CCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCC--------CCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        204 IADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCA--------RPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       204 ~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~--------~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                      ...++|+.     ...|.|+|||||+...    +  .|+||++++..-.        .....+.+..+...++++++.++
T Consensus       154 ~~~~i~~d-----~~~~~G~SGGPlv~~~----G--~vvGI~s~~~~~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l~~  222 (324)
T 1y8t_A          154 VLDAIQTD-----AAINPGNSGGALVNMN----A--QLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELIS  222 (324)
T ss_dssp             CEEEEEEC-----SCCCTTCTTEEEECTT----S--EEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHHH
T ss_pred             cCCEEEEc-----CCCCCCCccCcEECCC----C--eEEEEEeeecccCcccccccccccceEEecCHHHHHHHHHHHHH
Confidence            23568873     4689999999999421    2  5999999875321        11124567777777888877665


Q ss_pred             cc
Q psy10841        276 RA  277 (286)
Q Consensus       276 ~~  277 (286)
                      .-
T Consensus       223 ~g  224 (324)
T 1y8t_A          223 TG  224 (324)
T ss_dssp             HS
T ss_pred             cC
Confidence            43

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=99.71  E-value=6.7e-17  Score=134.91  Aligned_cols=172  Identities=20%  Similarity=0.198  Sum_probs=106.2

Q ss_pred             eEEeEEEEeeCC-EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCcccc
Q psy10841         68 FFHCGGVVLDES-WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRY  146 (286)
Q Consensus        68 ~~~C~GtLIs~~-~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~  146 (286)
                      ...|+|+||+++ ||||+|||+.+.  ..+.|.++.         .+.+.++-+..+       ..+|||||||+.+.  
T Consensus        55 ~~~gsG~iI~~~g~ILTnaHvv~~~--~~i~V~~~~---------g~~~~a~vv~~d-------~~~DlAllkl~~~~--  114 (239)
T 1l1j_A           55 ASLGSGFIFDPEGYILTNYHVVGGA--DNITVTMLD---------GSKYDAEYIGGD-------EELDIAVIKIKASD--  114 (239)
T ss_dssp             EEEEEEEEEETTTEEEEEHHHHSSC--SSCEEECTT---------SCEEEBCCCEEE-------TTTTEEEEEBCCSS--
T ss_pred             CceEEEEEEeCCCEEEEChHHhCCC--CEEEEEECC---------CCEEEEEEEEEc-------CCCCEEEEEEcCCC--
Confidence            467999999986 999999999653  345565541         233333322111       35899999999775  


Q ss_pred             CCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeeccc--cccccc----CCCCEEEEeeCCCCCCCC
Q psy10841        147 NRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKHYED----RIADVICAGMPQGGRDTC  220 (286)
Q Consensus       147 ~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~--c~~~~~----~~~~~~C~~~~~~~~~~c  220 (286)
                       ..+.|++|+.. .....++.++++||+.....        .....+++.  |.....    ....++|+.     ...|
T Consensus       115 -~~~~~~~l~~s-~~~~~G~~v~~iG~p~g~~~--------~vt~Givs~~~r~~~~~~~~~~~~~~i~td-----a~i~  179 (239)
T 1l1j_A          115 -KKFPYLEFGDS-DKVKIGEWAIAIGNPLGFQH--------TVTVGVVSATNRRIPKPDGSGYYVGLIQTD-----AAIN  179 (239)
T ss_dssp             -SCCCCCEECCG-GGCCTTCEEEEEECTTSSSC--------EEEEEEEEEEEEEEECTTSSCEEEEEEEES-----SCCC
T ss_pred             -CCCceEEecCc-cCCccccEEEEEECCCCCCC--------cEEEEEEeccccccccCCCccccCCEEEEC-----CCCC
Confidence             45788999763 23567899999999754211        112222221  110000    123467773     4689


Q ss_pred             CCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcccccc
Q psy10841        221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERAKVE  280 (286)
Q Consensus       221 ~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~~~~~  280 (286)
                      +|+|||||+..    ++  .|+||++++..-......+....+...++|+++.++.-++.
T Consensus       180 ~G~SGGPLv~~----~G--~vvGI~s~~~~~~~~~g~~faIP~~~~~~~~~~l~~~g~v~  233 (239)
T 1l1j_A          180 PGNSGGPLLNI----HG--EVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTILTQKKVE  233 (239)
T ss_dssp             TTTTTSEEECS----SS--EEEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGGCC-----
T ss_pred             CCCccHHhccC----CC--eEEEEEeeeecCCCcCceEEEEEHHHHHHHHHHHHHCCCCc
Confidence            99999999942    12  59999998865111123456777888888888877655443

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=99.70  E-value=1.4e-16  Score=132.55  Aligned_cols=174  Identities=17%  Similarity=0.177  Sum_probs=107.1

Q ss_pred             ccceEEEEeeCC----------eEEeEEEEeeCC-EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         56 AWPWLIALYRDG----------FFHCGGVVLDES-WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        56 ~~Pw~v~i~~~~----------~~~C~GtLIs~~-~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      -.|.+|.|....          ...|+|+||+++ ||||+|||+.+  ...+.|.++         ....+.++.+..+|
T Consensus        40 ~~~sVV~I~~~~~~~~~~~~~~~~~GSG~iI~~~G~VLTaaHvv~~--~~~i~V~~~---------~g~~~~a~v~~~d~  108 (231)
T 3tjo_A           40 IAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN--KHRVKVELK---------NGATYEAKIKDVDE  108 (231)
T ss_dssp             HGGGEEEEEEEEECTTSSCEEEEEEEEEEECSTTCEEEEETTTCCS--SSEEEEECT---------TSCEEEEEEEEEET
T ss_pred             hcCcEEEEEEEeccccCCCccccceEEEEEEeCCCEEEEchhcccC--CceEEEEcC---------CCCEEEEEEEEecC
Confidence            346777775321          157999999998 99999999965  334555443         23344555555555


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeeccc--ccc-c-
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKH-Y-  200 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~--c~~-~-  200 (286)
                             .+|||||||+.+.    .+.+++|+.. .....++.++++||+....     .   .....+++.  +.. . 
T Consensus       109 -------~~DlAlL~l~~~~----~~~~~~l~~~-~~~~~G~~v~~~G~p~g~~-----~---~~~~g~vs~~~~~~~~~  168 (231)
T 3tjo_A          109 -------KADIALIKIDHQG----KLPVLLLGRS-SELRPGEFVVAIGSPFSLQ-----N---TVTTGIVSTTQRGGKEL  168 (231)
T ss_dssp             -------TTTEEEEECCCSS----CCCCCCBCCG-GGCCTTCEEEEEEEEETTE-----E---EEEEEEEEECC------
T ss_pred             -------CCCEEEEEecCCC----CCCceecCCc-CCCCCCCEEEEEECCCCCC-----C---ceeeEEEeecccccccc
Confidence                   4799999998753    3567788653 3356789999999985321     1   111111111  100 0 


Q ss_pred             -c-cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        201 -E-DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       201 -~-~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                       . ......+++     +...|.|+|||||+..    ++  .|+||++++..++    ....+.+....+||++..+
T Consensus       169 ~~~~~~~~~i~~-----da~i~~G~SGGPLv~~----~G--~vVGI~s~~~~~g----~~~aip~~~i~~~l~~~~~  230 (231)
T 3tjo_A          169 GLRNSDMDYIQT-----DAIINYGNAGGPLVNL----DG--EVIGINTLKVTAG----ISFAIPSDKIKKFLTESHD  230 (231)
T ss_dssp             -------CCEEE-----SSCCCTTTTTSEEECT----TS--CEEEEEEEEEETT----EEEEEEHHHHHHHHHHHHT
T ss_pred             ccCCCcccEEEE-----cCCcCCCCchhHeecC----CC--eEEEEEeEEecCC----eEEEEEHHHHHHHHHHHhh
Confidence             0 011123444     2468899999999932    22  3999999986432    3556777778888877654

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=99.67  E-value=6.2e-16  Score=136.29  Aligned_cols=175  Identities=21%  Similarity=0.214  Sum_probs=110.8

Q ss_pred             EEeEEEEeeCC-EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccccC
Q psy10841         69 FHCGGVVLDES-WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYN  147 (286)
Q Consensus        69 ~~C~GtLIs~~-~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~  147 (286)
                      ..|+|+||+++ ||||+|||+.+.  ..+.|.+.         ....+..+.+..++       .+|||||||+.+.   
T Consensus        53 g~GSG~iI~~~G~IlT~aHvv~~~--~~i~V~~~---------~g~~~~a~~v~~d~-------~~DlAlLkl~~~~---  111 (348)
T 3qo6_A           53 GSGSGFVWDKQGHIVTNYHVIRGA--SDLRVTLA---------DQTTFDAKVVGFDQ-------DKDVAVLRIDAPK---  111 (348)
T ss_dssp             EEEEEEEEETTTEEEECHHHHTTC--SEEEEECT---------TSCEEEEEEEEEEG-------GGTEEEEECCCCG---
T ss_pred             ceEEEEEEeCCCEEEECHHHhCCC--cEEEEEEC---------CCCEEEEEEEEEcC-------cCCEEEEEEcCCC---
Confidence            46999999998 999999999653  34555443         22344444444444       3799999998763   


Q ss_pred             CceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeeccccccccc-CCCCEEEEeeCCCCCCCCCCCCCC
Q psy10841        148 RYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYED-RIADVICAGMPQGGRDTCQGDSGG  226 (286)
Q Consensus       148 ~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~~-~~~~~~C~~~~~~~~~~c~gdsGg  226 (286)
                      ..++|++|+... ....++.++++||+...........+......+   |..... .....+++     +...|.|+|||
T Consensus       112 ~~~~~i~l~~s~-~~~~G~~v~~iG~p~g~~~~~~~g~vs~~~~~~---~~~~~~~~~~~~i~~-----da~i~~G~SGG  182 (348)
T 3qo6_A          112 NKLRPIPVGVSA-DLLVGQKVFAIGNPFGLDHTLTTGVISGLRREI---SSAATGRPIQDVIQT-----DAAINPGNSGG  182 (348)
T ss_dssp             GGCCCCCBCCST-TCCTTCEEEEEECGGGCTTEEEEEEEEEEEEEE---CCSSSSSCEEEEEEE-----CSCCCTTCTTC
T ss_pred             CCceeEEecCcc-cCCCCCEEEEEECCCCCCCcEeEEEEEeecccc---ccccCCCcccCEEEE-----eCCcCCCCcHH
Confidence            357889997643 356789999999986422211111111111111   111000 01123333     35789999999


Q ss_pred             eeeeecCCCCCcEEEEEEEEecCC-CCCCCCCeeEEeCCCcHHHHHhhhccccc
Q psy10841        227 PLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMSNSERAKV  279 (286)
Q Consensus       227 PL~~~~~~~~~~~~lvGI~s~~~~-c~~~~~p~v~t~v~~~~~WI~~~~~~~~~  279 (286)
                      ||+..    ++  .|+||++++.. +......+.++.+....+||++.++.-++
T Consensus       183 PLvn~----~G--~vvGI~s~~~~~~~~~~g~gfaiP~~~~~~~~~~l~~~g~~  230 (348)
T 3qo6_A          183 PLLDS----SG--TLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKV  230 (348)
T ss_dssp             EEECT----TS--CEEEEEEEEECSSSSCSSCEEEEEHHHHHHHHHHHHHHSSC
T ss_pred             HhhCC----CC--eEEEEEEeeecCCCCcccEEEEEEecchHHHHHHHHhCCce
Confidence            99942    22  39999998753 33334467889999999999998765544

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=99.66  E-value=1.2e-15  Score=127.42  Aligned_cols=175  Identities=15%  Similarity=0.156  Sum_probs=108.4

Q ss_pred             EEeEEEEeeCC-EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccccC
Q psy10841         69 FHCGGVVLDES-WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYN  147 (286)
Q Consensus        69 ~~C~GtLIs~~-~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~  147 (286)
                      ..++|.||+++ ||||+|||+.+.  ..+.|.+.         ....+..+.+..||.       +|||||||+.+.   
T Consensus        53 ~~GsG~ii~~~G~IlTaaHvv~~~--~~~~V~~~---------~g~~~~a~vv~~d~~-------~DlAll~l~~~~---  111 (237)
T 3lgi_A           53 TLGSGVIMDQRGYIITNKHVINDA--DQIIVALQ---------DGRVFEALLVGSDSL-------TDLAVLKINATG---  111 (237)
T ss_dssp             EEEEEEEEETTTEEEEEHHHHTTC--SEEEEECT---------TSCEEEEEEEEEETT-------TTEEEEECCCSS---
T ss_pred             eEEEEEEEeCCCEEEEeeeecCCC--CEEEEEeC---------CCCEEEEEEEEEcCC-------CCEEEEEecCCC---
Confidence            57999999998 999999999653  34445432         233455555555653       699999998764   


Q ss_pred             CceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccc-cCCCCEEEEeeCCCCCCCCCCCCCC
Q psy10841        148 RYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE-DRIADVICAGMPQGGRDTCQGDSGG  226 (286)
Q Consensus       148 ~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~-~~~~~~~C~~~~~~~~~~c~gdsGg  226 (286)
                       .+.+++|+.. .....++.++++||+.....     .+..-.+... .+.... ......++.     +...|.|+|||
T Consensus       112 -~~~~~~l~~~-~~~~~G~~v~~~G~p~~~~~-----~~~~g~vs~~-~~~~~~~~~~~~~i~~-----d~~i~~G~SGG  178 (237)
T 3lgi_A          112 -GLPTIPINAR-RVPHIGDVVLAIGNPYNLGQ-----TITQGIISAT-GRIGLNPTGRQNFLQT-----DASINHGNSGG  178 (237)
T ss_dssp             -CCCCCCCCTT-CCCCTTBEEEEEECGGGSCS-----EEEEEEEEEE-CCSSCCTTSCSCCEEE-----CSCCCTTCTTC
T ss_pred             -CCceEeccCc-ccCCCCCEEEEEECCCCCCC-----cEEEEEEEec-ccccccCCCcCCEEEE-----cCccCCCCchH
Confidence             3567788753 34567889999999754211     1111111111 111110 112234544     24679999999


Q ss_pred             eeeeecCCCCCcEEEEEEEEecCCCCC----CCCCeeEEeCCCcHHHHHhhhcccccccCC
Q psy10841        227 PLLCPVPGSQGRWYVAGVVSHGEGCAR----PNEPGVYTRVSQFVPWLMSNSERAKVECGG  283 (286)
Q Consensus       227 PL~~~~~~~~~~~~lvGI~s~~~~c~~----~~~p~v~t~v~~~~~WI~~~~~~~~~~~~~  283 (286)
                      ||+..    ++  .|+||++++.....    ....+....+....+++++.++.-+..-+.
T Consensus       179 Plv~~----~G--~vvGI~s~~~~~~~~~~~~~g~~~aip~~~i~~~~~~l~~~g~~~~~~  233 (237)
T 3lgi_A          179 ALVNS----LG--ELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRHH  233 (237)
T ss_dssp             EEECT----TC--CEEEEECCCCCCCTTSCCCCSCEEEEEHHHHHHHHHHHHHHSSCCC--
T ss_pred             HeeCC----CC--eEEEEEeeeeccCCCCcCcCceEEEEEHHHHHHHHHHHHHcCCCCCch
Confidence            99942    22  39999998764321    122456677778888998888776665443

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=99.61  E-value=2.1e-14  Score=124.95  Aligned_cols=168  Identities=16%  Similarity=0.162  Sum_probs=104.4

Q ss_pred             eEEeEEEEeeCC-EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCcccc
Q psy10841         68 FFHCGGVVLDES-WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRY  146 (286)
Q Consensus        68 ~~~C~GtLIs~~-~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~  146 (286)
                      ...|+|+||+++ ||||+|||+.+..  .+.|.++         ..+.+..+-+..+       ..+||||||++.+   
T Consensus        41 ~~~gsG~iI~~~G~IlT~aHvv~~~~--~i~V~~~---------~g~~~~a~v~~~d-------~~~DlAllk~~~~---   99 (318)
T 1te0_A           41 RTLGSGVIMDQRGYIITNKHVINDAD--QIIVALQ---------DGRVFEALLVGSD-------SLTDLAVLIIKAT---   99 (318)
T ss_dssp             EEEEEEEECSTTCEEEEEHHHHTTCS--EEEEECT---------TSCEEEEEEEEEE-------TTTTEEEEECCCS---
T ss_pred             CccEEEEEEeCCCEEEECHHHcCCCC--EEEEEeC---------CCCEEEEEEEEeC-------CCceEEEEEEeCC---
Confidence            468999999998 9999999996533  4555443         1223333322222       2589999999876   


Q ss_pred             CCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccc-cccc--cCCCCEEEEeeCCCCCCCCCCC
Q psy10841        147 NRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPAC-KHYE--DRIADVICAGMPQGGRDTCQGD  223 (286)
Q Consensus       147 ~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c-~~~~--~~~~~~~C~~~~~~~~~~c~gd  223 (286)
                       ..+.|++|+.. ..+..++.++++||.....        ......+++.- ...+  .....++|+.     ...|.|+
T Consensus       100 -~~~~~~~l~~~-~~~~~G~~v~~~G~p~g~~--------~~~~~g~vs~~~~~~~~~~~~~~~i~~d-----~~~~~G~  164 (318)
T 1te0_A          100 -GGLPTIPINAR-RVPHIGDVVLAIGNPYNLG--------QTITQGIISATGRIGLNPTGRQNFLQTD-----ASINHGN  164 (318)
T ss_dssp             -SCCCCCCCCTT-CCCCTTCEEEEECCCSSSS--------CCEEEEEEEECCCCCCCTTCSCCSEEES-----SCCCTTT
T ss_pred             -CCCceEEeeCc-cCCCCCCEEEEEEcCCCCC--------CcEEeeEEecccccccCCCCcCCEEEEC-----CCCCCCC
Confidence             34678888753 3466789999999753211        11122222211 1101  1234567773     4689999


Q ss_pred             CCCeeeeecCCCCCcEEEEEEEEecCCCC----CCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        224 SGGPLLCPVPGSQGRWYVAGVVSHGEGCA----RPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       224 sGgPL~~~~~~~~~~~~lvGI~s~~~~c~----~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                      |||||+..    ++  .|+||++++....    .......+..+....+|+++.++..
T Consensus       165 SGGPl~~~----~G--~vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~~~g  216 (318)
T 1te0_A          165 SGGALVNS----LG--ELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDG  216 (318)
T ss_dssp             TTSEEECT----TC--CEEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHHHHS
T ss_pred             CcCceECC----CC--eEEEEEeeeeccCCccccccceEEeccHHHHHHHHHHHHHcC
Confidence            99999942    22  3999999876321    1122456777777888888776543

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=99.58  E-value=2.7e-14  Score=125.03  Aligned_cols=164  Identities=17%  Similarity=0.154  Sum_probs=98.1

Q ss_pred             eEEeEEEEeeCC-EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCcccc
Q psy10841         68 FFHCGGVVLDES-WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRY  146 (286)
Q Consensus        68 ~~~C~GtLIs~~-~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~  146 (286)
                      ...++|+||+++ ||||+|||+.+  ...+.|.++         ....+.++.+..||.       +|||||||+.+.  
T Consensus        45 ~~~GSG~iI~~~G~ILTaaHvv~~--~~~i~V~~~---------~g~~~~a~~~~~d~~-------~DlAlL~l~~~~--  104 (332)
T 3num_A           45 VASGSGFIVSEDGLIVTNAHVVTN--KHRVKVELK---------NGATYEAKIKDVDEK-------ADIALIKIDHQG--  104 (332)
T ss_dssp             EEEEEEEEEETTTEEEECTTTCCT--TSEEEEEET---------TSCEEEEEEEEEETT-------TTEEEEEECCSS--
T ss_pred             eeeEEEEEEeCCCEEEEChHHcCC--CCEEEEEEC---------CCCEEEEEEEEecCC-------CCeEEEEEcCCC--
Confidence            357999999998 99999999965  345556553         234456666667764       699999998763  


Q ss_pred             CCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeeccc--ccccc-cCCCCEEEEeeCCCCCCCCCCC
Q psy10841        147 NRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKHYE-DRIADVICAGMPQGGRDTCQGD  223 (286)
Q Consensus       147 ~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~--c~~~~-~~~~~~~C~~~~~~~~~~c~gd  223 (286)
                        .+.+++|+.. .....++.++++||+.....     ....-.+.....  +...+ ......+++     +...|.|+
T Consensus       105 --~~~~~~l~~~-~~~~~G~~v~~~G~p~g~~~-----~~~~g~vs~~~~~~~~~~~~~~~~~~i~~-----d~~i~~G~  171 (332)
T 3num_A          105 --KLPVLLLGRS-SELRPGEFVVAIGSPFSLQN-----TVTTGIVSTTQRGGKELGLRNSDMDYIQT-----DAIINYGN  171 (332)
T ss_dssp             --CCCCCCBCCT-TSCCTTCEEEEECC-----C-----CEEEEEEEEC--------------CCEEE-----SSCCCTTT
T ss_pred             --CCceeeecCc-ccCCCCCEEEEEECCCCCCc-----ceeeeEEEeecccccccCcCCCcCCEEEE-----ECCcCCCC
Confidence              3567778653 34567899999999854211     111111111110  11000 011123444     24678999


Q ss_pred             CCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhh
Q psy10841        224 SGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNS  274 (286)
Q Consensus       224 sGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~  274 (286)
                      |||||+...    +  .|+||++++...+    .+....+.....||++.+
T Consensus       172 SGGPlv~~~----G--~vvGI~s~~~~~g----~~~aip~~~i~~~l~~~~  212 (332)
T 3num_A          172 AGGPLVNLD----G--EVIGINTLKVTAG----ISFAIPSDKIKKFLTESH  212 (332)
T ss_dssp             TTSEEEETT----S--CEEEEEEEEEETT----EEEEEEHHHHHHHHHHHC
T ss_pred             cHHHhhCCC----C--cEEEEEeeEeccc----ceEEECHHHHHHHHHHHh
Confidence            999999422    2  2999999976422    345566666677776654

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=99.56  E-value=2.7e-14  Score=124.67  Aligned_cols=158  Identities=16%  Similarity=0.134  Sum_probs=98.2

Q ss_pred             EEeEEEEeeCC-EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccccC
Q psy10841         69 FHCGGVVLDES-WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYN  147 (286)
Q Consensus        69 ~~C~GtLIs~~-~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~  147 (286)
                      ..|+|+||+++ ||||+|||+.+.  ..+.|.++         ..+.+.++-+..    +   ..+|||||||+.+.   
T Consensus        47 ~~gsG~iI~~~G~IlT~aHvv~~~--~~i~V~~~---------~g~~~~a~v~~~----d---~~~DlAllkl~~~~---  105 (325)
T 1lcy_A           47 SNGSGFVVAADGLIVTNAHVVADR--RRVRVRLL---------SGDTYEAVVTAV----D---PVADIATLRIQTKE---  105 (325)
T ss_dssp             EEEEEEEEETTTEEEECHHHHTTC--SEEEEECT---------TSCEEEEEEEEE----E---TTTTEEEEECCCSS---
T ss_pred             ccEEEEEEeCCCEEEECHHHcCCC--CEEEEEeC---------CCCEEEEEEEEE----C---CCCCEEEEEEcCCC---
Confidence            67999999998 999999999753  35555553         122333332211    1   25899999998653   


Q ss_pred             CceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccc-cc---cCCCCEEEEeeCCCCCCCCC
Q psy10841        148 RYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-YE---DRIADVICAGMPQGGRDTCQ  221 (286)
Q Consensus       148 ~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~-~~---~~~~~~~C~~~~~~~~~~c~  221 (286)
                       .+.|++|+.. .....++.++++||+....        ......+++  .|.. .+   .....++|+.     ...|.
T Consensus       106 -~~~~~~l~~~-~~~~~G~~v~~~G~p~~~~--------~~v~~G~vs~~~~~~~~~g~~~~~~~~i~~d-----~~~~~  170 (325)
T 1lcy_A          106 -PLPTLPLGRS-ADVRQGEFVVAMGSPFALQ--------NTITSGIVSSAQRPARDLGLPQTNVEYIQTD-----AAIDF  170 (325)
T ss_dssp             -CCCCCCBCCG-GGCCTTCEEEECCCTTSSS--------SCCEEEEBCSCSCC---------CCCCEEES-----SCCST
T ss_pred             -CCceEEeccc-ccCCCCCEEEEEECCCCCC--------CcEEeEEEecccccccccCCCCCCCCEEEEc-----CCCCC
Confidence             3678888753 2456788999999986422        122333343  2321 11   1234678884     46899


Q ss_pred             CCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHh
Q psy10841        222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS  272 (286)
Q Consensus       222 gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~  272 (286)
                      |+|||||+..    ++  .|+||++++...    ....+..+....+|+++
T Consensus       171 G~SGGPl~~~----~G--~vVGI~s~~~~~----g~~~aip~~~i~~~l~~  211 (325)
T 1lcy_A          171 GNAGGPLVNL----DG--EVIGVNTMKVTA----GISFAIPSDRLREFLHR  211 (325)
T ss_dssp             TTTTSEEEET----TS--CEEEEEEEEEET----TEEEEEEHHHHHHHTCC
T ss_pred             CCccccEECC----CC--EEEEEEeEeecC----CeeEEEEHHHHHHHHHH
Confidence            9999999942    22  399999987521    12344555545555544

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=99.54  E-value=1.4e-13  Score=115.14  Aligned_cols=168  Identities=17%  Similarity=0.162  Sum_probs=99.5

Q ss_pred             eEEeEEEEeeCC--EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccc
Q psy10841         68 FFHCGGVVLDES--WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLR  145 (286)
Q Consensus        68 ~~~C~GtLIs~~--~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~  145 (286)
                      ...++|.||+++  ||||+|||+.+.  ..+.|.+.         ....+..+.+..++       .+|||||||+.+. 
T Consensus        62 ~~~GSGfiI~~~~G~IlTnaHvv~~a--~~i~V~~~---------dg~~~~a~vv~~d~-------~~DlAlLkv~~~~-  122 (245)
T 3sti_A           62 EGLGSGVIINASKGYVLTNNHVINQA--QKISIQLN---------DGREFDAKLIGSDD-------QSDIALLQIQNPS-  122 (245)
T ss_dssp             --CCEEEEEETTTTEEEECGGGC------CEEEECT---------TSCEEEEEEEEEET-------TTTEEEEEESSCC-
T ss_pred             cceEEEEEEeCCCCEEEEcHHHhCCC--CEEEEEEC---------CCCEEEEEEEEecC-------CCCEEEEEeccCC-
Confidence            357999999998  999999999653  34445442         23345555555555       3799999997643 


Q ss_pred             cCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccc-ccccCCCCEEEEeeCCCCCCCCCC
Q psy10841        146 YNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK-HYEDRIADVICAGMPQGGRDTCQG  222 (286)
Q Consensus       146 ~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~-~~~~~~~~~~C~~~~~~~~~~c~g  222 (286)
                         .+.++.|... .....++.++++||......        .....+++  .+. .........+|+.     ...|.|
T Consensus       123 ---~~~~~~l~~s-~~~~~G~~v~aiG~P~g~~~--------~vt~G~vs~~~~~~~~~~~~~~~i~td-----a~i~~G  185 (245)
T 3sti_A          123 ---KLTQIAIADS-DKLRVGDFAVAVGNPFGLGQ--------TATSGIVSALGRSGLNLEGLENFIQTD-----ASINRG  185 (245)
T ss_dssp             ---SCCCCCBCCG-GGCCTTBEEEEEECGGGSCC--------EEEEEEEEECSSCSSCCTTCSSCEEES-----SCCCTT
T ss_pred             ---CCceeeecCc-CCCCCCCEEEEEECCCCCCC--------cEEeeEEeeecccccCCCCccCEEEEc-----CCcCCC
Confidence               3567777653 34567889999998533111        11222222  111 0111223456653     367999


Q ss_pred             CCCCeeeeecCCCCCcEEEEEEEEecCCCC-CCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        223 DSGGPLLCPVPGSQGRWYVAGVVSHGEGCA-RPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       223 dsGgPL~~~~~~~~~~~~lvGI~s~~~~c~-~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                      +|||||+..    ++  .|+||.++..... .....+....+....+++++.++.-
T Consensus       186 ~SGGPLvn~----~G--~vVGI~s~~~~~~~~~~g~~faIP~~~~~~~~~~l~~~g  235 (245)
T 3sti_A          186 NSGGALLNL----NG--ELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFG  235 (245)
T ss_dssp             TTTSEEECT----TS--CEEEEEECCC------CCCEEEEEHHHHHHHHHHHHHHH
T ss_pred             cchhHeecC----CC--eEEEEEEeEECCCCCcceEEEEEeHHHHHHHHHHHHHcC
Confidence            999999931    22  3999999876422 1112455667777778888776543

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=99.46  E-value=8.7e-14  Score=111.70  Aligned_cols=160  Identities=21%  Similarity=0.225  Sum_probs=90.7

Q ss_pred             eCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCcc
Q psy10841         65 RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPL  144 (286)
Q Consensus        65 ~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i  144 (286)
                      .++...|+.-++-.++|||++||+....  .  +...         ...       +++.+|    ..+|||||||+.+.
T Consensus        11 ~~~~~~CT~Gf~~~~~ilTa~Hc~~~~~--~--v~~~---------dg~-------v~~~~~----~~~DiAlikl~~~~   66 (189)
T 2ea3_A           11 IGGRSRCSIGFAVNGGFITAGHCGRTGA--T--TANP---------TGT-------FAGSSF----PGNDYAFVRTGAGV   66 (189)
T ss_dssp             ETTEEEEECCEEETTEEEECGGGCCTTC--E--EETT---------TEE-------EEEEEC----SBSCEEEEEECTTC
T ss_pred             ECCCCCCccCEEccCeEEEchhcCCCCC--E--EEeC---------CcE-------EEeeCC----CCCCEEEEEECCCC
Confidence            3556789977777779999999986432  1  2210         111       122222    14799999999887


Q ss_pred             ccCCcee-----eeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccccCCCCEEEEeeCCCCCCC
Q psy10841        145 RYNRYVR-----PICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDT  219 (286)
Q Consensus       145 ~~~~~v~-----picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~C~~~~~~~~~~  219 (286)
                      .+...+.     +++|+.. ..+..++.+.  .||.+.  +.....+......+...-.........++|+         
T Consensus        67 ~~~~~v~~~~g~~v~l~~s-~~~~vG~~v~--~~G~~t--G~t~G~Vs~~~~~v~~~~~~~~~~~~~~~~~---------  132 (189)
T 2ea3_A           67 NLLAQVNNYSGGRVQVAGH-TAAPVGSAVC--RSGSTT--GWHCGTITALNSSVTYPEGTVRGLIRTTVCA---------  132 (189)
T ss_dssp             EEEEEEECSSSCEEECCBC-CCCCTTCEEE--EEETTT--EEEEEEEEEEEEEEEETTEEEEEEEEESCCC---------
T ss_pred             ccccceEecCCceeecCCC-cCCCCCCEEE--EEEeCC--ccEEEEEEecceEEEeCCccCcceEEeeeec---------
Confidence            6665555     6777652 3345566444  455431  1110111111111100000000011111222         


Q ss_pred             CCCCCCCeeeeecCCCCCcEEEEEEEEecCC-CCCCCCCeeEEeCCCcHHHH
Q psy10841        220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWL  270 (286)
Q Consensus       220 c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~-c~~~~~p~v~t~v~~~~~WI  270 (286)
                      -+|||||||++..       .++||++++.. |.. ..+.+|++|..+++|.
T Consensus       133 ~~GDSGgpl~~~~-------~~vGi~s~~~~~c~~-~~~~~~~pi~~~l~~~  176 (189)
T 2ea3_A          133 EPGDSGGSLLAGN-------QAQGVTSGGSGNCRT-GGTTFFQPVNPILQAY  176 (189)
T ss_dssp             CTTCTTCEEEETT-------EEEEEEEEEEEETTT-EEEEEEEEHHHHHHHH
T ss_pred             cCCCccCeEEECC-------EEEEEEeecCCCCCC-CCcEEEEEHHHHHHHC
Confidence            1799999999522       49999999875 654 4589999999999887

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=99.44  E-value=4.2e-13  Score=107.74  Aligned_cols=161  Identities=16%  Similarity=0.163  Sum_probs=95.8

Q ss_pred             eEEeE-EEEeeCC---EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEE-eeeEEEECCCCCCCCCCCceEEEEecC
Q psy10841         68 FFHCG-GVVLDES---WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVR-PVSRIVMHSMFKRAEMTNDLALLQLAA  142 (286)
Q Consensus        68 ~~~C~-GtLIs~~---~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~-~v~~~~~hp~y~~~~~~~DiAllkL~~  142 (286)
                      ...|+ |.++++.   ||||++||+....  .  +.++       + ..+.. .+..    .+|    ..+|+|||||+.
T Consensus        11 ~~~CT~Gfiv~~~g~~~ilT~~Hv~~~~~--~--v~~~-------~-~~~~~g~~~~----~~~----~~~DiAlikl~~   70 (187)
T 1hpg_A           11 GSRCSAAFNVTKGGARYFVTAGHCTNISA--N--WSAS-------S-GGSVVGVREG----TSF----PTNDYGIVRYTD   70 (187)
T ss_dssp             TEEEECCEEEEETTEEEEEECHHHHTTCS--E--EESS-------T-TCCEEEEEEE----EEC----SBSCEEEEEECS
T ss_pred             CCcCcceEEEEECCeeEEEECcccCCCCC--e--EEeC-------C-CceeEEEEeC----ccC----CCCCEEEEEeCC
Confidence            46798 8888774   9999999996532  2  2211       0 10110 1110    111    147999999998


Q ss_pred             ccccCCceee-----eecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccccCCCCEEEEeeCCCCC
Q psy10841        143 PLRYNRYVRP-----ICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGR  217 (286)
Q Consensus       143 ~i~~~~~v~p-----icL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~C~~~~~~~~  217 (286)
                      ++.+...+..     +.+.. ...+..++.+...||...    .....+......+... .   .....++|+.     .
T Consensus        71 ~~~~~~~v~~~~g~~~~i~~-~~~~~~G~~v~~~G~~~g----~t~G~v~~~~~~v~~~-~---~~~~~~i~t~-----~  136 (187)
T 1hpg_A           71 GSSPAGTVDLYNGSTQDISS-AANAVVGQAIKKSGSTTK----VTSGTVTAVNVTVNYG-D---GPVYNMVRTT-----A  136 (187)
T ss_dssp             SCCCCSEEECSSSCEEECCE-ECCCCTTCEEEEEETTTE----EEEEEEEEEEEEEEET-T---EEEEEEEEEC-----C
T ss_pred             CCCcCceEEecCCceeeecc-ccCCCCCCEEEEEEcCCC----EeEEEEEEeEEEEEeC-C---CeEeeeEEec-----c
Confidence            7655443321     33322 245677888889998632    1112222222222100 0   1123467774     3


Q ss_pred             CCCCCCCCCeeeeecCCCCCcEEEEEEEEecCC-CCCCCCCeeEEeCCCcHHHH
Q psy10841        218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWL  270 (286)
Q Consensus       218 ~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~-c~~~~~p~v~t~v~~~~~WI  270 (286)
                      ..|.|||||||++..       .++||++++.. |.. ..|.+|++|..+++.+
T Consensus       137 ~~~~GdSGgpl~~~~-------~~vGi~s~~~~~~~~-~~~~~~~~i~~~~~~l  182 (187)
T 1hpg_A          137 CSAGGDSGGAHFAGS-------VALGIHSGSSGCSGT-AGSAIHQPVTEALSAY  182 (187)
T ss_dssp             CCCTTCTTCEEEETT-------EEEEEEEEESCCBTT-BCCCEEEEHHHHHHHH
T ss_pred             ccCCCCCCCeEEECC-------EEEEEEEeeCCCCCC-CCceEEEEHHHHHHHc
Confidence            578999999999532       59999999975 654 5699999999887765

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=99.40  E-value=6.4e-12  Score=110.26  Aligned_cols=168  Identities=18%  Similarity=0.166  Sum_probs=100.6

Q ss_pred             eEEeEEEEeeCC--EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccc
Q psy10841         68 FFHCGGVVLDES--WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLR  145 (286)
Q Consensus        68 ~~~C~GtLIs~~--~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~  145 (286)
                      ...|+|.||+++  ||||++||+.+.  ..+.|.+.         ....+..+.+..||.       +||||||++.+- 
T Consensus        62 ~~~GSGfiI~~~~G~IlTnaHVv~~~--~~i~V~~~---------dg~~~~a~vv~~d~~-------~DlAlLkv~~~~-  122 (345)
T 3stj_A           62 EGLGSGVIINASKGYVLTNNHVINQA--QKISIQLN---------DGREFDAKLIGSDDQ-------SDIALLQIQNPS-  122 (345)
T ss_dssp             EEEEEEEEEETTTTEEEECHHHHTTE--EEEEEECT---------TSCEEEEEEEEEETT-------TTEEEEEESSCC-
T ss_pred             ceeEEEEEEECCCCEEEEChHHhCCC--CEEEEEeC---------CCcEEEEEEEEEcCC-------CCEEEEEEcccC-
Confidence            467999999998  999999999652  33444432         234566666667764       699999997653 


Q ss_pred             cCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeeccc--cc-ccccCCCCEEEEeeCCCCCCCCCC
Q psy10841        146 YNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPA--CK-HYEDRIADVICAGMPQGGRDTCQG  222 (286)
Q Consensus       146 ~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~--c~-~~~~~~~~~~C~~~~~~~~~~c~g  222 (286)
                         .+.++.|... .....++.+.++||.....        ......+++.  +. .........+++     +...|.|
T Consensus       123 ---~~~~~~l~~s-~~~~~G~~V~aiG~p~g~~--------~~vt~G~Vs~~~~~~~~~~~~~~~iq~-----da~i~~G  185 (345)
T 3stj_A          123 ---KLTQIAIADS-DKLRVGDFAVAVGNPFGLG--------QTATSGIVSALGRSGLNLEGLENFIQT-----DASINRG  185 (345)
T ss_dssp             ---SCCCCCBCCG-GGCCTTBEEEEEECGGGCS--------CEEEEEEEEEEEECCSSSSSSCCEEEE-----CSCCCTT
T ss_pred             ---CCceEeecCc-ccCCCCCEEEEEECCCCCC--------CcEEeeEEeeecccccCCCCccCEEEE-----ecccCCC
Confidence               3566777543 3456788999999964321        1112222221  11 001112334554     3468999


Q ss_pred             CCCCeeeeecCCCCCcEEEEEEEEecCC-CCCCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        223 DSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       223 dsGgPL~~~~~~~~~~~~lvGI~s~~~~-c~~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                      +|||||+..    ++  .|+||.+.... .......+....+.....++++.++..
T Consensus       186 nSGGPLvn~----~G--~vVGI~s~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g  235 (345)
T 3stj_A          186 NSGGALLNL----NG--ELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFG  235 (345)
T ss_dssp             CTTCEEECT----TS--CEEEEEEEEECTTSSCSSCEEEEEHHHHHHHHHHHHHHS
T ss_pred             cCccceeCC----CC--EEEEEEeccccCCCCcceeEEEEehHHHHHHHHHHHhcc
Confidence            999999932    22  39999987643 221112344455555566666655433

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.27  E-value=3.4e-10  Score=102.47  Aligned_cols=168  Identities=17%  Similarity=0.140  Sum_probs=100.6

Q ss_pred             eEEeEEEEeeCC--EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccc
Q psy10841         68 FFHCGGVVLDES--WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLR  145 (286)
Q Consensus        68 ~~~C~GtLIs~~--~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~  145 (286)
                      ...++|.+|+++  ||||++||+.+.  ..+.|.+.         ....+..+-+..||.       +||||||++.+. 
T Consensus        62 ~~~GSGfii~~~~G~IlTn~Hvv~~a--~~i~V~~~---------dg~~~~a~vv~~d~~-------~DlAllkv~~~~-  122 (436)
T 4a8c_A           62 EGLGSGVIINASKGYVLTNNHVINQA--QKISIQLN---------DGREFDAKLIGSDDQ-------SDIALLQIQNPS-  122 (436)
T ss_pred             ceEEEEEEEECCCCEEEECHHHhCCC--CEEEEEeC---------CCCEEEEEEEEEcCC-------CCEEEEEecCCC-
Confidence            467999999998  999999999763  35555553         234556666666663       699999997543 


Q ss_pred             cCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeeccc--cc-ccccCCCCEEEEeeCCCCCCCCCC
Q psy10841        146 YNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPA--CK-HYEDRIADVICAGMPQGGRDTCQG  222 (286)
Q Consensus       146 ~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~--c~-~~~~~~~~~~C~~~~~~~~~~c~g  222 (286)
                         .+.++.|... .....++.+.++||......        .....+++.  +. .........+.+     +...|.|
T Consensus       123 ---~l~~~~l~~s-~~~~~G~~v~aiG~P~g~~~--------~vt~G~vs~~~r~~~~~~~~~~~iq~-----da~i~~G  185 (436)
T 4a8c_A          123 ---KLTQIAIADS-DKLRVGDFAVAVGNPFGLGQ--------TATSGIVSALGRSGLNLEGLENFIQT-----DASINRG  185 (436)
T ss_pred             ---CCceEeccCc-ccCCCCCEEEEEEcCCCCCc--------cEEEEEEeeecccccCCCCccCEEEE-----cCccCCC
Confidence               3577888653 34567899999998533111        111112221  11 000111233443     3467899


Q ss_pred             CCCCeeeeecCCCCCcEEEEEEEEecCCCC-CCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        223 DSGGPLLCPVPGSQGRWYVAGVVSHGEGCA-RPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       223 dsGgPL~~~~~~~~~~~~lvGI~s~~~~c~-~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                      +|||||+..      .-.++||.+...... .....+....+....+++++.++.-
T Consensus       186 nSGGPl~n~------~G~vvGI~~~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g  235 (436)
T 4a8c_A          186 NAGGALLNL------NGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFG  235 (436)
T ss_pred             CCcCcccCC------CCEEEEEEeeeccCCCCceeEEEEEehHHHHHHHHHHHhcc
Confidence            999999932      224999998765321 1111233444555566666665443

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}

Probab=99.20  E-value=1.1e-11  Score=99.06  Aligned_cols=153  Identities=18%  Similarity=0.300  Sum_probs=80.3

Q ss_pred             EEeE-EEEeeC---CEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCcc
Q psy10841         69 FHCG-GVVLDE---SWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPL  144 (286)
Q Consensus        69 ~~C~-GtLIs~---~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i  144 (286)
                      ..|+ |.++++   .+|||++||+....  .+.+.           ...... .   ..|       .+|+|||||+.+.
T Consensus        14 ~~CT~Gf~v~~~~~~~ilTa~Hc~~~g~--~v~~~-----------~g~v~~-~---~~~-------~~D~Alikl~~~~   69 (186)
T 2pfe_A           14 YRCSIGFSVRQGSQTGFATAGHCGSTGT--RVSSP-----------SGTVAG-S---YFP-------GRDMGWVRITSAD   69 (186)
T ss_dssp             EEEECCEEEEETTEEEEEECGGGCCTTC--EEBTT-----------TEEEEE-E---ECS-------BSCEEEEEECTTS
T ss_pred             CcEEeeEEEEcCCeeEEEEChhhCCCCC--EEEEe-----------eEEEEe-c---CCC-------CCCEEEEEeCCCc
Confidence            6688 666654   59999999986522  22210           011100 0   012       4799999998876


Q ss_pred             ccCCcee-----eeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccc-cccCCCCEEEEeeCCCCCC
Q psy10841        145 RYNRYVR-----PICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKH-YEDRIADVICAGMPQGGRD  218 (286)
Q Consensus       145 ~~~~~v~-----picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~-~~~~~~~~~C~~~~~~~~~  218 (286)
                      .....+.     ++.+.. ...+..++.+...|.-.    +............+.. ... .......++|+.       
T Consensus        70 ~~~~~v~~~~g~~~~i~~-~~~~~vG~~vc~~G~~t----G~t~G~vs~~~~tv~~-~~~~~~~~~~~~~c~~-------  136 (186)
T 2pfe_A           70 TVTPLVNRYNGGTVTVTG-SQEAATGSSVCRSGATT----GWRCGTIQSKNQTVRY-AEGTVTGLTRTTACAE-------  136 (186)
T ss_dssp             EEEEEEECSSSCEEECCB-CCCCCTTCEEEEEETTT----EEEEEEEEEEEEEEEE-TTEEEEEEEEESCCCC-------
T ss_pred             ccccceeccCCceEecCC-CCCCCCCCeEEEEEeCC----ceEEEEEEEEeeeEEe-CCceEeceEeccEEec-------
Confidence            5444443     445543 23455666554444311    0000111111111110 000 001111223332       


Q ss_pred             CCCCCCCCeeeeecCCCCCcEEEEEEEEecCC-CCCCCCCeeEEeCCCcHH
Q psy10841        219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVP  268 (286)
Q Consensus       219 ~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~-c~~~~~p~v~t~v~~~~~  268 (286)
                        .|||||||++..       .++||++++.. |.. ..+.+|++|..+++
T Consensus       137 --~GDSGgpl~~~~-------~~vGi~s~g~~~c~~-~~~~~~~pi~~~l~  177 (186)
T 2pfe_A          137 --GGDSGGPWLTGS-------QAQGVTSGGTGDCRS-GGITFFQPINPLLS  177 (186)
T ss_dssp             --TTCTTCEEEETT-------EEEEEEEEEEEETTT-EEEEEEEEHHHHHH
T ss_pred             --CCCccCeEEECC-------EEEEEEeecCCCCCC-CCcEEEEEHHHHHH
Confidence              699999999622       49999999874 654 34789999877654

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.18  E-value=1.9e-10  Score=104.36  Aligned_cols=171  Identities=17%  Similarity=0.170  Sum_probs=97.7

Q ss_pred             eEEeEEEEeeCC--EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccc
Q psy10841         68 FFHCGGVVLDES--WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLR  145 (286)
Q Consensus        68 ~~~C~GtLIs~~--~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~  145 (286)
                      ...++|.+|+++  ||||++||+.+.  ..+.|.+.         ....+..+-+..||.       +||||||++.   
T Consensus        76 ~~~GSGfiI~~~~G~IlTn~HVv~~a--~~i~V~~~---------dg~~~~a~vv~~d~~-------~DlAlLkv~~---  134 (451)
T 3pv2_A           76 ESIGSGVIIDPNNGVIITNDHVIRNA--SLITVTLQ---------DGRRLKARLIGGDSE-------TDLAVLKIDA---  134 (451)
T ss_dssp             EEEEEEEEEETTTTEEEECHHHHTTE--EEEEEECT---------TSCEEECEEEEEETT-------TTEEEEECCC---
T ss_pred             ceeEEEEEEECCCCEEEEChHHhCCC--CEEEEEEc---------CCCEEEEEEEecCcC-------CcEEEEEEcC---
Confidence            357999999974  999999999653  34444442         234566666666764       6999999964   


Q ss_pred             cCCceeeeecCCCCCCCCCCCceEEEEe--cccCCCCCCCccceeEeeeecccc-cc--cccCCCCEEEEeeCCCCCCCC
Q psy10841        146 YNRYVRPICLPDVTETPEPYSTCTAVGW--GAVFEHGPDPDHMREVQVPILPAC-KH--YEDRIADVICAGMPQGGRDTC  220 (286)
Q Consensus       146 ~~~~v~picL~~~~~~~~~~~~~~~~Gw--g~~~~~~~~~~~l~~~~~~~~~~c-~~--~~~~~~~~~C~~~~~~~~~~c  220 (286)
                        ..+.++.|... .....++.+.++||  |.....  .   .......+++.- ..  ........+++     +...|
T Consensus       135 --~~l~~~~l~~s-~~~~~G~~V~aiG~P~G~~~~~--~---~~~vt~Givs~~~r~~~~~~~~~~~iqt-----da~i~  201 (451)
T 3pv2_A          135 --KNLKSLVIGDS-DKLEVGDFVVAIGNPFGLNSFG--N---SQSATFGIVSALKRSDLNIEGVENFIQT-----DAAIN  201 (451)
T ss_dssp             --SSCCCCCBCCG-GGCCTTCEEEEEECCCCC----------CCEEEEEEEEEEC----------CCEEE-----SSCCC
T ss_pred             --cCCceeEecCc-ccCCCCCEEEEEECCCCccccc--c---CCceeEEEEeeccccccCCCCcceEEEE-----ecccC
Confidence              33566777542 34567899999995  432111  0   112222222211 10  00111234554     24678


Q ss_pred             CCCCCCeeeeecCCCCCcEEEEEEEEecCC-CCCCCCCeeEEeCCCcHHHHHhhhcccc
Q psy10841        221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMSNSERAK  278 (286)
Q Consensus       221 ~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~-c~~~~~p~v~t~v~~~~~WI~~~~~~~~  278 (286)
                      .|+|||||+..    ++  .|+||.++... .......+....+.....++++.++.-+
T Consensus       202 ~GnSGGPl~n~----~G--~VIGI~t~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~~g~  254 (451)
T 3pv2_A          202 PGNSGGALVNA----KG--ELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIKFGS  254 (451)
T ss_dssp             GGGTTSEEEET----TC--CEEEEEECCC------CCCEEEEEHHHHHHHHHHHHHHSS
T ss_pred             CCCCcCcccCC----CC--eEEEEEeEeecCCCCccceeeeehhHHHHHHHHHHHhcCC
Confidence            99999999932    22  29999987653 2111223455666666677776665433

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}

Probab=99.02  E-value=5.3e-10  Score=89.55  Aligned_cols=40  Identities=33%  Similarity=0.640  Sum_probs=30.2

Q ss_pred             CCCCCCeeeeecCCCCCcEEEEEEEEecCC-CCCCCCCeeEEeCCCcHH
Q psy10841        221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVP  268 (286)
Q Consensus       221 ~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~-c~~~~~p~v~t~v~~~~~  268 (286)
                      +|||||||++..       .++||++++.. |.. ..+..|++|..+++
T Consensus       140 ~GDSGgpl~~~~-------~~vGi~s~~~~~~~~-~~~~~~~pi~~~l~  180 (188)
T 2oua_A          140 PGDSGGSFISGT-------QAQGVTSGGSGNCRT-GGTTFYQEVNPMLN  180 (188)
T ss_dssp             TTCTTCEEEETT-------EEEEEEEEEEEETTT-EEEEEEEESHHHHH
T ss_pred             CCCccceEEECC-------EEEEEEeccCCCCCC-CCceEEEEHHHHHH
Confidence            799999999522       49999999874 654 34789999876543

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.93  E-value=3.3e-08  Score=89.63  Aligned_cols=166  Identities=18%  Similarity=0.188  Sum_probs=92.8

Q ss_pred             eEEeEEEEeeCC--EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccc
Q psy10841         68 FFHCGGVVLDES--WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLR  145 (286)
Q Consensus        68 ~~~C~GtLIs~~--~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~  145 (286)
                      ...|+|.+|+++  ||||++||+.+.  ..+.|.+.         ....+..+-+..+|       ..||||||++.+- 
T Consensus        85 ~~~GSG~ii~~~~g~IlTn~HVv~~a--~~i~V~~~---------dg~~~~a~vv~~d~-------~~DlAvlkv~~~~-  145 (448)
T 1ky9_A           85 MALGSGVIIDADKGYVVTNNHVVDNA--TVIKVQLS---------DGRKFDAKMVGKDP-------RSDIALIQIQNPK-  145 (448)
T ss_dssp             EEEEEEEEEETTTTEEEEEHHHHTTE--EEEEEEET---------TSCEEEEEEEEEET-------TTTEEEEEESSCC-
T ss_pred             ccEEEEEEEECCCCEEEEChHHhCCC--CEEEEEEC---------CCCEEEEEEEEEcC-------CCCEEEEEecCCC-
Confidence            367999999986  999999999653  34555543         12334443333333       4799999998542 


Q ss_pred             cCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeeccccccc-c--cCCCCEEEEeeCCCCCCCCCC
Q psy10841        146 YNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHY-E--DRIADVICAGMPQGGRDTCQG  222 (286)
Q Consensus       146 ~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~-~--~~~~~~~C~~~~~~~~~~c~g  222 (286)
                         .+.++.|... .....++.+.++||.....        .....-+++..... .  ......+++     +...+.|
T Consensus       146 ---~~~~~~l~~s-~~~~~G~~V~aiG~P~g~~--------~tvt~Givs~~~r~~~~~~~~~~~iqt-----da~i~~G  208 (448)
T 1ky9_A          146 ---NLTAIKMADS-DALRVGDYTVAIGNPFGLG--------ETVTSGIVSALGRSGLNAENYENFIQT-----DAAINRG  208 (448)
T ss_dssp             ---SCCCCCBCCG-GGCCTTCEEEEEECTTSSS--------CEEEEEEEEEESSCC-----CCCCEEE-----SCCCTTS
T ss_pred             ---CCceEEeccc-ccCCCCCEEEEEECCCCCC--------CeEEeEEEeeccccccCCCCccCEEEE-----cCCCCCC
Confidence               3456667542 3456788999999753211        11122222211100 0  111234544     2467899


Q ss_pred             CCCCeeeeecCCCCCcEEEEEEEEecCCCC-CCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        223 DSGGPLLCPVPGSQGRWYVAGVVSHGEGCA-RPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       223 dsGgPL~~~~~~~~~~~~lvGI~s~~~~c~-~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                      +|||||+..    ++  .++||.+....-. .....+....+....+++.+.++
T Consensus       209 nSGGpl~n~----~G--~vvGI~~~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~  256 (448)
T 1ky9_A          209 NAGGALVNL----NG--ELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVE  256 (448)
T ss_dssp             CCCSEEECT----TS--CEEEEEECSSTTSCCCSSSEEEEEHHHHHHHHHHHHH
T ss_pred             CCCCeeECC----CC--EEEEEEEEeecCCCCccceeeeeecccchhhHHHHhh
Confidence            999999932    22  3999998764211 11112333444444555555443

>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}

Probab=98.70  E-value=1.6e-08  Score=80.44  Aligned_cols=168  Identities=15%  Similarity=0.029  Sum_probs=91.2

Q ss_pred             EEEEeeCCeEEeEEEEe---eCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceE
Q psy10841         60 LIALYRDGFFHCGGVVL---DESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLA  136 (286)
Q Consensus        60 ~v~i~~~~~~~C~GtLI---s~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiA  136 (286)
                      ++.|+..+.++|.|+.+   ..+++|||+||+.... ..  +....        ....+++..+  .+.|.......|+|
T Consensus        18 vv~l~~~d~h~G~g~~V~~~G~~~LlTA~Hv~~~~~-~~--~~~~k--------~g~~ip~~~~--~~~~~~~d~~~D~a   84 (191)
T 1zyo_A           18 LVAIKSGPTTIGFGCRTKIDGEDCLLTAHHVWCNSM-RP--TGLAK--------AGKQVSVEDW--EISMSSSDKMLDFA   84 (191)
T ss_dssp             EEEEEETTEEEEEEEEEEC--CEEEEECHHHHTSSS-CC--CEEEE--------TTEEEECCSC--EEEEEECCTTTCEE
T ss_pred             EEEEEeCCeEEEEEEEEEECCCcEEEEChhhCcCCc-ce--eeecC--------CCCEEEcccc--eeeEccCCCCCcEE
Confidence            67787777899999999   5679999999985532 11  11111        1111111110  01122223358999


Q ss_pred             EEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccccCCCCEEEEeeCCCC
Q psy10841        137 LLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGG  216 (286)
Q Consensus       137 llkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~C~~~~~~~  216 (286)
                      |+++...+.-.-.+.++.+-.    ...++.++++|+.....       +... ..+   +..   .....+...    .
T Consensus        85 ll~vp~~~~s~lg~~~a~~~~----~~~~~~vt~yg~~~~~~-------~~s~-~g~---~~~---~~~~~~~~~----~  142 (191)
T 1zyo_A           85 IVRVPTHVWSKLGVKSTPLVC----PSSKDVITCYGGSSSDC-------LMSG-VGS---SST---SEFTWKLTH----T  142 (191)
T ss_dssp             EEECCHHHHHHHTCCCCCBCC----CCSCEEEEEEEESSTTS-------EEEE-EEE---EEE---CSSTTEEEE----C
T ss_pred             EEEcCCChhhhcCcceeEeec----CCCCccEEEEeecCCCC-------Eeec-ccc---eee---ccCCcEEEE----E
Confidence            999987654212244444422    22467888888753211       1110 000   000   010111111    2


Q ss_pred             CCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHh
Q psy10841        217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS  272 (286)
Q Consensus       217 ~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~  272 (286)
                      ..+..|+||+|++...       .+|||..-+..-   +....-++++.+.+||.+
T Consensus       143 ~~T~~G~SGsP~~ng~-------~IVGvh~G~~~~---~~~N~a~n~~~~~~~~~~  188 (191)
T 1zyo_A          143 CPTAAGWSGTPLYSSR-------GVVGMHVGFEEI---GKLNRGVNMFYVANYLLR  188 (191)
T ss_dssp             CCCCTTCTTCEEECSS-------CEEEEEEEEEET---TTEEEEECHHHHHHHTCC
T ss_pred             cCCCCCCCCCcEEcCC-------eEEEEEeCcccC---CceeeeeehHHHhhhhhh
Confidence            3447899999999532       388998765431   334668899999998744

>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}

Probab=98.62  E-value=8.9e-07  Score=68.88  Aligned_cols=82  Identities=17%  Similarity=0.149  Sum_probs=50.1

Q ss_pred             eCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCcc
Q psy10841         65 RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPL  144 (286)
Q Consensus        65 ~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i  144 (286)
                      ......++|.+| +.+|||++||+.+..  .+.|.++          ...+..+ ++..       ...||||||++...
T Consensus        17 ~~~~~~GSGfii-~g~IlTn~HVV~~~~--~i~V~~d----------g~~~~a~-vv~d-------~~~DlAlLkv~~~~   75 (163)
T 2w5e_A           17 DTPEGKGTGFFS-GNDIVTAAHVVGNNT--FVNVCYE----------GLMYEAK-VRYM-------PEKDIAFITCPGDL   75 (163)
T ss_dssp             EETTEEEEEEEE-TTEEEEEHHHHTTCS--EEEEEET----------TEEEEEE-EEEC-------CSSSEEEEECCTTC
T ss_pred             cCCceeEEEEEE-CCEEEecHHHhCCCc--eEEEEEC----------CEEEEEE-EEEE-------CCCCEEEEEecCCC
Confidence            344567999999 899999999997543  4444431          2233333 2222       24899999998643


Q ss_pred             ccCCceeeeecCCCCCCCCCCCceEEEEec
Q psy10841        145 RYNRYVRPICLPDVTETPEPYSTCTAVGWG  174 (286)
Q Consensus       145 ~~~~~v~picL~~~~~~~~~~~~~~~~Gwg  174 (286)
                         ..+.|+.|....    ..+.+.++|+.
T Consensus        76 ---~~~~~l~l~~~~----~~~~v~~~G~p   98 (163)
T 2w5e_A           76 ---HPTARLKLSKNP----DYSCVTVMAYV   98 (163)
T ss_dssp             ---CCSCCCCBCSSC----CTTEEEEEEEE
T ss_pred             ---CCcceEEcCCCC----CCCEEEEEEeC
Confidence               224455564421    12567777775

>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...

Probab=98.59  E-value=2.4e-07  Score=74.61  Aligned_cols=25  Identities=24%  Similarity=0.395  Sum_probs=18.5

Q ss_pred             CCeEEeE-EEEeeC---CEEEeccCCcCC
Q psy10841         66 DGFFHCG-GVVLDE---SWVMTAAHCVDG   90 (286)
Q Consensus        66 ~~~~~C~-GtLIs~---~~VLTaAhC~~~   90 (286)
                      ++...|+ |.++++   .+|||++||+..
T Consensus        12 ~~~~~CT~Gf~v~~~~~~~ilTa~Hc~~~   40 (198)
T 2h5c_A           12 NNASLCSVGFSVTRGATKGFVTAGHCGTV   40 (198)
T ss_dssp             TTTEEEECCEEEEETTEEEEEECGGGCCT
T ss_pred             CCCCCCCcCEEEecCCeeEEEECcccCCC
Confidence            4446788 666655   499999999865

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=98.48  E-value=3.9e-06  Score=77.16  Aligned_cols=173  Identities=17%  Similarity=0.153  Sum_probs=88.3

Q ss_pred             eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccccC
Q psy10841         68 FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYN  147 (286)
Q Consensus        68 ~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~  147 (286)
                      ....+|.+|++.+|||.+|++.+.  ..+.|.+-        .....+..+-+...|       ..||||||++.+-. .
T Consensus        73 ~s~GSGfiI~dG~IlTN~HVV~~a--~~i~V~~~--------~dg~~~~A~vv~~D~-------~~DLAvLkv~~~~~-~  134 (539)
T 4fln_A           73 TSTGSAFMIGDGKLLTNAHCVEHD--TQVKVKRR--------GDDRKYVAKVLVRGV-------DCDIALLSVESEDF-W  134 (539)
T ss_dssp             EEEEEEEEEETTEEEECGGGGTTE--EEEEEECT--------TCCCCEEEEEEEEET-------TTTEEEEEECCSSS-S
T ss_pred             ceEEEEEEEECCEEEEChHHcCCC--CeEEEEEc--------cCCEEEEEEEEEECC-------CCCEEEEEEeCCcC-C
Confidence            356899999999999999999652  33444321        112233333333333       36999999975422 2


Q ss_pred             CceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccc-cccccCCCCEEEEeeCCCCCCCCCCCCCC
Q psy10841        148 RYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPAC-KHYEDRIADVICAGMPQGGRDTCQGDSGG  226 (286)
Q Consensus       148 ~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c-~~~~~~~~~~~C~~~~~~~~~~c~gdsGg  226 (286)
                      ..+.|+.+..   ....++.+.++|+......       .....-+++.- ...+......+-..  .-+...-.|.|||
T Consensus       135 ~~~~pl~~g~---~~~vGd~V~aiG~P~g~~~-------~tvT~GIVSa~~r~~~~~~~~~~~~I--QtDAaInpGnSGG  202 (539)
T 4fln_A          135 KGAEPLRLGH---LPRLQDSVTVVGYPLGGDT-------ISVTKGVVSRIEVTSYAHGSSDLLGI--QIDAAINPGNSGG  202 (539)
T ss_dssp             TTCCCCCBCC---CCCTTCEEEEEECCSSSCC-------CEEEEEEEEEEEEEECTTSCCEEEEE--EESSCCCTTTTTS
T ss_pred             cCCceeecCC---cCcCCCeEEEEEcCCCCCC-------CcEEeEEECcccccccCCCCcceeEE--EEEeEecCCCccc
Confidence            2345555533   2345788888887532111       01222222210 01111111111111  1234567899999


Q ss_pred             eeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        227 PLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       227 PL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      ||+-.    ++  .+|||.+...........+....+......+.+.++.
T Consensus       203 PLvn~----~G--eVIGIntai~~~~~~~gigfAIP~~~v~~vl~~l~~~  246 (539)
T 4fln_A          203 PAFND----QG--ECIGVAFQVYRSEETENIGYVIPTTVVSHFLTDYERN  246 (539)
T ss_dssp             EEECS----SS--CEEEEECCCC-----CCCEEEEEHHHHHHHHHHHHTT
T ss_pred             hhccC----CC--cEEEEEEEEecCCCCCcceecccHHHHHHHHHHHHHc
Confidence            99932    22  3999987554221111234444444445555555443

>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} PDB: 3ak5_A

Probab=98.37  E-value=2e-06  Score=83.27  Aligned_cols=179  Identities=15%  Similarity=0.187  Sum_probs=96.6

Q ss_pred             eEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccccCCce
Q psy10841         71 CGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYV  150 (286)
Q Consensus        71 C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v  150 (286)
                      -.+|||+|+||+|+||-...     -.|.+|.        ....++|   +.|++|..    .|++++||++.+.   .+
T Consensus        58 G~aTLI~pqYiVSvaHn~gy-----~~v~fG~--------~~n~Y~i---V~rnn~~~----~Dy~~pRL~K~VT---Ev  114 (1048)
T 1wxr_A           58 GVATLINPQYIASVKHNGGY-----TNVSFGD--------GENRYNI---VDRNNAPS----LDFHAPRLDKLVT---EV  114 (1048)
T ss_dssp             CCCEEEETTEEEBCTTCCSC-----CEECCTT--------SCCCEEE---EECCBCSS----SSCBCCEESSCCC---SS
T ss_pred             ceEEEEcCcEEEEeeecCCC-----ceEEeCC--------CcceEEE---EeeCCCCC----CCeeeeecccccc---cc
Confidence            56899999999999994321     1344442        1223433   67887752    4999999999874   36


Q ss_pred             eeeecCCCC------CCCCCCCceEEEEecccCCCCCCCccceeEee--eeccccc--ccccCCCCEEEEee--------
Q psy10841        151 RPICLPDVT------ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQV--PILPACK--HYEDRIADVICAGM--------  212 (286)
Q Consensus       151 ~picL~~~~------~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~--~~~~~c~--~~~~~~~~~~C~~~--------  212 (286)
                      .||-+....      .....+...+.+|-|.+....... .+..+.-  ..+..-.  .........++...        
T Consensus       115 aP~~~t~~g~~~~~y~d~ery~~f~RvGsG~q~~~~~ng-~~~~l~~aY~yltGGt~~~~~~~~~~~li~~~~g~~f~~~  193 (1048)
T 1wxr_A          115 APTAVTAQGAVAGAYLDKERYPVFYRLGSGTQYIKDSNG-QLTKMGGAYSWLTGGTVGSLSSYQNGEMISTSSGLVFDYK  193 (1048)
T ss_dssp             CCCCBCSSCSCTTGGGCTTTCCCEEEEECSCEEEECTTC-CEEEEECTTSSCEEEEECCCEEETTTTEEEECTTCTTCHH
T ss_pred             cceeeccccCccccccccccCceEEEECCcEEEEEcCCC-ceeEccccceEEecccccCccccCCceEEeccCCcccccc
Confidence            677765432      124556777888888763211110 0110000  0000000  00000111122000        


Q ss_pred             --CCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcccc
Q psy10841        213 --PQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERAK  278 (286)
Q Consensus       213 --~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~~~  278 (286)
                        ..-....-.||||+||+..+. ...+|+|+|+.+.+..-+..+  ..|.-+.  .+|+.++++++.
T Consensus       194 ~~~PL~~~~~~GDSGSPlF~yD~-~~kKWvLvGv~s~g~~~g~~~--~~~~~~~--~~f~~~~~~~d~  256 (1048)
T 1wxr_A          194 LNGAMPIYGEAGDSGSPLFAFDT-VQNKWVLVGVLTAGNGAGGRG--NNWAVIP--LDFIGQKFNEDN  256 (1048)
T ss_dssp             HHCSSBCBCCTTCTTCEEEEEET-TTTEEEEEEEEEEESSTTCSC--EEEEECC--HHHHHHHHHTTB
T ss_pred             cCCcccCCCCCCCCCCeeeEEEc-CCCeEEEEEEecccccCCccc--ceEEEeC--HHHhhhhhhccc
Confidence              011123457999999998773 578999999987454322211  4455443  378877765443

>3syj_A Adhesion and penetration protein autotransporter; bacterial aggregation and biofilm formation, SELF-associatin autotransporter (SAAT); 2.20A {Haemophilus influenzae}

Probab=96.95  E-value=0.0045  Score=59.47  Aligned_cols=189  Identities=15%  Similarity=0.206  Sum_probs=88.6

Q ss_pred             eEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCC---CCCCCceEEEEecCccccC
Q psy10841         71 CGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKR---AEMTNDLALLQLAAPLRYN  147 (286)
Q Consensus        71 C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~---~~~~~DiAllkL~~~i~~~  147 (286)
                      -.+|||+|+||++++|-..     .-.|.+|...... +.....+.+...-   +|.+   ..+..|+.+=||++-+.  
T Consensus        58 GvATLi~pQYiVSVkHN~g-----y~~v~FG~~~~n~-d~h~~~Y~iV~RN---n~~~~~~~~~~~Dfh~PRLnK~VT--  126 (1011)
T 3syj_A           58 GVAALVENQYIVSVAHNVG-----YTDVDFGAEGNNP-DQHRFTYKIVKRN---NYKKDNLHPYEDDYHNPRLHKFVT--  126 (1011)
T ss_dssp             SSCEEEETTEEEBCTTCCS-----CCEECCSCSSCCG-GGCCCCEEEEECC---BCCCBTTBCSCSCCBCCEESSCCC--
T ss_pred             ceeEEecCceEEEEEecCC-----ccceecccCCCCc-cccccceEEEecc---CCCcccccCcccccccccccceEE--
Confidence            4689999999999999542     2256666432110 1112233333322   2322   22345999999998653  


Q ss_pred             CceeeeecCCCCC-----CCCCCCceEEEEecccCCCCCCCccceeEeeee---cc-cccccccCCCCEEEEe-eC----
Q psy10841        148 RYVRPICLPDVTE-----TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPI---LP-ACKHYEDRIADVICAG-MP----  213 (286)
Q Consensus       148 ~~v~picL~~~~~-----~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~---~~-~c~~~~~~~~~~~C~~-~~----  213 (286)
                       .+.|+.......     ....+....-+|-|........ ..+..+.-..   .- .--.........+-.. ..    
T Consensus       127 -EvaP~~~t~~~~~~~Y~d~~ryp~f~RvGSG~Q~~~~~~-~~~~~l~~aY~yltgGt~~~~~~~~~g~~~~~g~~~~~~  204 (1011)
T 3syj_A          127 -EAAPIDMTSNMNGSTYSDRTKYPERVRIGSGRQFWRNDQ-DKGDQVAGAYHYLTAGNTHNQRGAGNGYSYLGGDVRKAG  204 (1011)
T ss_dssp             -SSCCCCBCCCCBGGGGGCTTTSCCEEEEECSCEEEECTT-CCEEEEECTTSCCEEEECCCEEEEEBTEEEECCCTTSCB
T ss_pred             -eecccccccccccccccCcCccceEEEeCCceEEEEcCC-CcceecccccccccCCcccccccCCCceEecCcceeccc
Confidence             355665543211     2233334445666654221111 0000000000   00 0000000000001100 00    


Q ss_pred             ---CCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        214 ---QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       214 ---~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                         .-....-.||||+||+..+. ...+|+|+|+...+.+...  .-.-|+-+.  .+|+.+++.++
T Consensus       205 ~~gpL~~yg~~GDSGSPLFayD~-~~~KWvl~Gv~~~~~~~~g--~~n~~~i~~--~~f~~~~~~~D  266 (1011)
T 3syj_A          205 EYGPLPIAGSKGDSGSPMFIYDA-EKQKWLINGILREGNPFEG--KENGFQLVR--KSYFDEIFERD  266 (1011)
T ss_dssp             TTBSCBCBCCTTCTTCEEEEEET-TTTEEEEEEEECC----------EEEEECC--HHHHHHHHHHH
T ss_pred             cCCccccCCCCCCCCCcceeeEc-CCCeEEEEEEeeccccccC--cccceEEec--hHHhhhhhhcc
Confidence               11123468999999998774 5789999999976543322  112344332  58888887654

>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3

Probab=96.67  E-value=0.02  Score=44.61  Aligned_cols=59  Identities=14%  Similarity=0.054  Sum_probs=37.5

Q ss_pred             EEEEeeCCeEEeEEEEeeCC-EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEE
Q psy10841         60 LIALYRDGFFHCGGVVLDES-WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALL  138 (286)
Q Consensus        60 ~v~i~~~~~~~C~GtLIs~~-~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAll  138 (286)
                      .|.++-...-.++|-+|+.+ +||||+|-+.+..  ...|.+.          .+.+.+...          -..|+|++
T Consensus         6 ~~~v~g~~~G~GsgF~i~~~g~vVTA~HVv~~~~--~~~V~~~----------G~~~~Vgf~----------~~~DlA~l   63 (198)
T 1mbm_A            6 VGFVAGSSYGTGSVWTRNNEVVVLTASHVVGRAN--MATLKIG----------DAMLTLTFK----------KNGDFAEA   63 (198)
T ss_dssp             EEEEESSSEEEEEEEEETTEEEEEEEHHHHCTTC--EEEEEET----------TEEEEEECE----------EETTEEEE
T ss_pred             eEEEecccCCccceEEECCCeEEEEeeeEEccCc--eEEEEEC----------CEEEEeecc----------cCCcEEEE
Confidence            35555555567889999866 5999999996533  3344442          222332211          24799999


Q ss_pred             Ee
Q psy10841        139 QL  140 (286)
Q Consensus       139 kL  140 (286)
                      ++
T Consensus        64 ~v   65 (198)
T 1mbm_A           64 VT   65 (198)
T ss_dssp             EE
T ss_pred             Ee
Confidence            99

>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta barrel, chymotrypsin-type cystein protease, enzyme- peptide complex; 1.80A {Tobacco etch virus} SCOP: b.47.1.3 PDB: 1lvb_A 1q31_A

Probab=96.54  E-value=0.1  Score=42.06  Aligned_cols=159  Identities=13%  Similarity=0.143  Sum_probs=84.4

Q ss_pred             EEEEeeCCEEEeccCCcCCCCCceEEEEE--eeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccccCCc
Q psy10841         72 GGVVLDESWVMTAAHCVDGFEKHYFEVYA--GMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRY  149 (286)
Q Consensus        72 ~GtLIs~~~VLTaAhC~~~~~~~~~~v~~--g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~  149 (286)
                      .=-|.--.||||-+|-+... .+.+.+..  |.+....    ....+|..+          ...||.||||.+.++  ..
T Consensus        40 l~gigyG~~iItn~HLf~~n-nG~L~I~s~hG~f~v~n----t~~lki~~i----------~g~DiiiIrmPkDfp--Pf  102 (229)
T 1lvm_A           40 LYGIGFGPFIITNKHLFRRN-NGTLLVQSLHGVFKVKN----TTTLQQHLI----------DGRDMIIIRMPKDFP--PF  102 (229)
T ss_dssp             EEEEEETTEEEECGGGGGCC-SSEEEEEETTEEEEESC----GGGSEEEEC----------TTSSCEEEECCTTSC--CC
T ss_pred             EEEEeECCEEEeChhhhccC-CCcEEEEeCCCeEEeCC----CCceeeEEe----------CCccEEEEeCCCcCC--Cc
Confidence            33355678999999999764 35555553  3333211    111222221          257999999998774  11


Q ss_pred             eeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccccCCCCEEEEeeCCCCCCCCCCCCCCeee
Q psy10841        150 VRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLL  229 (286)
Q Consensus       150 v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~C~~~~~~~~~~c~gdsGgPL~  229 (286)
                      -+-+++    ..+..++.+.++|-.....  .......+....        +......|=.-    .-.+=.|+-|.||+
T Consensus       103 ~~~l~F----R~P~~~e~V~lVg~~fq~k--~~~s~vSesS~i--------~p~~~~~fWkH----wIsT~~G~CGlPlV  164 (229)
T 1lvm_A          103 PQKLKF----REPQREERICLVTTNFQTK--SMSSMVSDTSCT--------FPSSDGIFWKH----WIQTKDGQCGSPLV  164 (229)
T ss_dssp             CSCCCB----CCCCTTCEEEEEEEECSSS--SCEEEECCCEEC--------EEETTTTEEEE----CBCCCTTCTTCEEE
T ss_pred             cccccc----CCCCCCCeEEEEEeEeecC--CccEEECCccee--------EecCCCCEeEE----EeeCCCCcCCCcEE
Confidence            222233    3456667777787654311  111111111100        00011111110    11334678899999


Q ss_pred             eecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCC-cHHHHHhh
Q psy10841        230 CPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQ-FVPWLMSN  273 (286)
Q Consensus       230 ~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~-~~~WI~~~  273 (286)
                      ...   ++.  +|||-|.+..-..   -..|+.+.. |.++|++.
T Consensus       165 s~~---Dg~--IVGiHsl~~~~~~---~NyF~~f~~~f~~~L~~~  201 (229)
T 1lvm_A          165 STR---DGF--IVGIHSASNFTNT---NNYFTSVPKNFMELLTNQ  201 (229)
T ss_dssp             ETT---TCC--EEEEEEEEETTSC---SEEEEECCTTHHHHHHCG
T ss_pred             ECC---CCc--EEEEEcccccCCC---eEEEeCCCHHHHHHHhcc
Confidence            755   333  9999998764322   478999876 44666553

>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0

Probab=96.46  E-value=0.12  Score=42.03  Aligned_cols=148  Identities=11%  Similarity=0.137  Sum_probs=77.9

Q ss_pred             EEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeE---EEECCCCCCCCCCCceEEEEecCccccCCce
Q psy10841         74 VVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSR---IVMHSMFKRAEMTNDLALLQLAAPLRYNRYV  150 (286)
Q Consensus        74 tLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~---~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v  150 (286)
                      -|.--.||||-+|-|.... +.+.|..-          ...+.+..   +-+||-     ...||.||||.+.++  ..-
T Consensus        34 gigyG~~iItn~HLf~rnn-g~L~I~s~----------hG~f~v~nt~~lki~~i-----~g~DiiiIrmPkDfp--Pf~   95 (241)
T 3mmg_A           34 GIGFGPYIIANQHLFRRNN-GELTIKTM----------HGEFAVANSTQLQMKPV-----EGRDIIVIKMAKDFP--PFP   95 (241)
T ss_dssp             EEEETTEEEECGGGGSSTT-CEEEEEET----------TEEEEEEEGGGSCEEEC-----TBSSCEEEECCTTSC--CCC
T ss_pred             EEeECCEEEEChhhcccCC-CeEEEEEC----------CceEEccCCCceeeEEe-----CCccEEEEeCCCCCC--Ccc
Confidence            3556889999999986433 34444431          11222221   122222     257999999987764  212


Q ss_pred             eeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccccCCCCEEEEeeCCCCCCCCCCCCCCeeee
Q psy10841        151 RPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLLC  230 (286)
Q Consensus       151 ~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~C~~~~~~~~~~c~gdsGgPL~~  230 (286)
                      +-+++    ..+..++.+.++|-....  ........+...        .+......|=.    ..-.+=.|+-|.||+.
T Consensus        96 ~kl~F----R~P~~~E~V~lVg~~fq~--k~~~s~vSesS~--------i~p~~~~~fWk----HwIsT~~G~CGlPlVs  157 (241)
T 3mmg_A           96 QKLKF----RQPTIKDRVCMVSTNFQQ--KSVSSLVSESSH--------IVHKEDTSFWQ----HWITTKDGQAGSPLVS  157 (241)
T ss_dssp             SCCCB----CCCCTTCCEEEEEEEECS--SCEEEEEEEEEC--------CEECTTSSEEE----ECBCCCTTCTTCEEEE
T ss_pred             hhccc----CCCCCCCeEEEEEeeccc--CCccEEECCcce--------eEEcCCCCEEE----EEcCCCCCcCCCeEEE
Confidence            22233    345666777788764431  111111111111        01111111111    1123446888999997


Q ss_pred             ecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCC
Q psy10841        231 PVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQ  265 (286)
Q Consensus       231 ~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~  265 (286)
                      ..   ++.  +|||.|.+..-.   .-..|+.+..
T Consensus       158 ~~---Dg~--IVGiHsl~~~~~---~~N~F~~f~~  184 (241)
T 3mmg_A          158 II---DGN--ILGIHSLTHTTN---GSNYFVEFPE  184 (241)
T ss_dssp             TT---TCC--EEEEEEEEETTT---CCEEEEECCT
T ss_pred             cC---CCc--EEEEEecccCCC---CcEEEEcCCH
Confidence            55   333  999999876432   2478888864

>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A

Probab=95.67  E-value=0.13  Score=40.60  Aligned_cols=36  Identities=19%  Similarity=0.116  Sum_probs=23.5

Q ss_pred             cceEEEEeeCCeEEeEEEEeeC-CEEEeccCCcCCCC
Q psy10841         57 WPWLIALYRDGFFHCGGVVLDE-SWVMTAAHCVDGFE   92 (286)
Q Consensus        57 ~Pw~v~i~~~~~~~C~GtLIs~-~~VLTaAhC~~~~~   92 (286)
                      -|-.|.+.-...-.++|-.|+. .+||||+|-+.+..
T Consensus        18 ~~N~v~V~G~~~GsGt~F~i~g~~~VvTA~HVVg~~~   54 (213)
T 3fan_A           18 SLNTVNVVGSSMGSGGVFTIDGKIKCVTAAHVLTGNS   54 (213)
T ss_dssp             CTTEEEEESSSEEEEEEEEETTEEEEEEEGGGSBTTE
T ss_pred             CCCeEEEeecCCCceEEEEECCcEEEEEeccEeCCCC
Confidence            3445666544445566666663 38999999997644

>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta helix, hydrolase, M protease, secreted, transmembrane, virulence; 1.75A {Haemophilus influenzae}

Probab=94.78  E-value=0.14  Score=49.39  Aligned_cols=196  Identities=15%  Similarity=0.152  Sum_probs=97.2

Q ss_pred             eEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeec---------c-cCCCCceEEeeeEEEECCCCCC-CC---------
Q psy10841         71 CGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR---------F-SFSPTEQVRPVSRIVMHSMFKR-AE---------  130 (286)
Q Consensus        71 C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~---------~-~~~~~~~~~~v~~~~~hp~y~~-~~---------  130 (286)
                      --+|||+|++|++.+|--....    .|.+|....         . +....+..+.+...--||.... ..         
T Consensus        60 gvaTLv~pQYivsVkHn~~gy~----~v~FG~~~~~~~~~n~~~hr~v~~~~~~Y~~V~rNn~~~~~~~~~~~~~~~~~~  135 (989)
T 3h09_A           60 RIATLINPQYVVGVKHVSNGVS----ELHFGNLNGNMNNGNAKSHRDVSSEENRYFSVEKNEYPTKLNGKAVTTEDQTQK  135 (989)
T ss_dssp             CCCEEEETTEEEBCTTCCSTTS----EEECSSSCCCTTSTTCSCBTTBCGGGGEEEEEECCBCCCCCSSSCCSHHHHHHH
T ss_pred             ceEEEecCceEEEEEeccCCcc----eEecCcccccccCCcchhcccccccCceeEEEEecCCCcccccccccccccccc
Confidence            4689999999999999522222    577775321         0 0011233566666555654320 01         


Q ss_pred             CCCceEEEEecCccccCCceeeeecCCCC------CCCCCCCceEEEEecccCCCCCCC---cccee-----Eeeeeccc
Q psy10841        131 MTNDLALLQLAAPLRYNRYVRPICLPDVT------ETPEPYSTCTAVGWGAVFEHGPDP---DHMRE-----VQVPILPA  196 (286)
Q Consensus       131 ~~~DiAllkL~~~i~~~~~v~picL~~~~------~~~~~~~~~~~~Gwg~~~~~~~~~---~~l~~-----~~~~~~~~  196 (286)
                      +..|..+=||++-+.   .+.||.+....      .....+....-+|-|.........   ..+.+     -.+..+..
T Consensus       136 ~~~Dyh~PRL~K~VT---EvaP~~~t~~g~~~~~y~d~~ryp~f~R~GsG~Qy~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (989)
T 3h09_A          136 RREDYYMPRLDKFVT---EVAPIEASTASSDAGTYNDQNKYPAFVRLGSGSQFIYKKGDNYSLILNNHEVGGNNLKLVGD  212 (989)
T ss_dssp             HHTCCBCCEESSCCC---SSCCCCBCCSCCSTTGGGCTTTCCEEEEEECSSEEEEEEEEEECCEETTEECCEEEEEEEEC
T ss_pred             ccccccCccccccee---eecccccccCCCCcccccCcccCceEEEECCceEEEEcCCCcccccccccccccccceeecc
Confidence            125888999987653   46677654321      123344455556666542111100   00000     01111110


Q ss_pred             ccc------cc---cCCCCEEEEeeC--------------CCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCC
Q psy10841        197 CKH------YE---DRIADVICAGMP--------------QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCAR  253 (286)
Q Consensus       197 c~~------~~---~~~~~~~C~~~~--------------~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~  253 (286)
                      .-.      .+   .....++-.+..              .-....-.||||+||+..+. ...+|+|+|++++..+-..
T Consensus       213 aY~y~t~Gt~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~gPL~~y~~~GDSGSPlF~yD~-~~~kWvl~Gvl~~~~g~~~  291 (989)
T 3h09_A          213 AYTYGIAGTPYKVNHENNGLIGFGNSKEEHSDPKGILSQDPLTNYAVLGDSGSPLFVYDR-EKGKWLFLGSYDFWAGYNK  291 (989)
T ss_dssp             TTSCCEEEBCSSEECCSTTEEEEECTTCCCSSCTTGGGSSTTBCBCCTTCTTCEEEEEET-TTTEEEEEEEEEEECHHHH
T ss_pred             cceeeECceeccccccCCceEEeccccccccCcccccccCcccccCCcCCCCCccceeec-ccceEEEEEEeecccccCC
Confidence            000      00   011223322210              01123457999999998774 5789999999986432111


Q ss_pred             CCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        254 PNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       254 ~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                      ..+ ..|+-+  -.+++.++++++
T Consensus       292 ~~~-~~w~i~--~~~f~~~i~~~d  312 (989)
T 3h09_A          292 KSW-QEWNIY--KPEFAKTVLDKD  312 (989)
T ss_dssp             CCE-EEEEEC--CHHHHHHHHHHH
T ss_pred             ccc-ceeEec--cHHHHHhHhhcc
Confidence            111 123333  267788887664

>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A {Escherichia coli O157}

Probab=94.22  E-value=0.3  Score=47.14  Aligned_cols=28  Identities=36%  Similarity=0.592  Sum_probs=23.4

Q ss_pred             CCCCCCCCeeeeecCCCCCcEEEEEEEEe
Q psy10841        219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSH  247 (286)
Q Consensus       219 ~c~gdsGgPL~~~~~~~~~~~~lvGI~s~  247 (286)
                      .-.||||+||+..+. ..++|+|+|+++.
T Consensus       203 ~~~GDSGSPlFaYD~-~~~KWvl~GVl~~  230 (968)
T 3sze_A          203 ASQGDAGSALFVYDN-QKKKWVVAGTVWG  230 (968)
T ss_dssp             CCTTCTTCEEEEEET-TTTEEEEEEEEEE
T ss_pred             CCcCCCCCcceeEEc-CCCeEEEEEEEec
Confidence            468999999998774 5789999999754

>4ash_A NS6 protease; hydrolase, trypsin-like, calicivirus; 1.58A {Murine norovirus 1}

Probab=93.09  E-value=0.67  Score=34.41  Aligned_cols=32  Identities=28%  Similarity=0.452  Sum_probs=26.7

Q ss_pred             CCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC
Q psy10841        215 GGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE  249 (286)
Q Consensus       215 ~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~  249 (286)
                      .+-.+-+||-|.|-++..   ++.|+++||...+.
T Consensus       132 mdLGT~PGDCGcPYvykr---gn~~vv~GVHtAat  163 (185)
T 4ash_A          132 QDLGTIPGDAGCPYVYKK---GNTWVVIGVHVAAT  163 (185)
T ss_dssp             -CCSCCTTCTTCEEEEEE---TTEEEEEEEEEEEC
T ss_pred             CcCCCCCCCCCCceEEee---CCceEEEEEEEeec
Confidence            345678999999999888   89999999998765

>2fyq_A Chymotrypsin-like cysteine proteinase; protease, norovirus, calicivirus, viral protein; 1.50A {Norwalk virus} PDB: 2fyr_A 2iph_A* 1wqs_A*

Probab=91.99  E-value=0.95  Score=33.76  Aligned_cols=31  Identities=29%  Similarity=0.517  Sum_probs=24.3

Q ss_pred             CCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC
Q psy10841        216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE  249 (286)
Q Consensus       216 ~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~  249 (286)
                      +-.+-+||-|.|-++..   ++.|+++||.+...
T Consensus       144 dLGT~PGDCGcPYvykr---gndwvv~GVH~Aat  174 (194)
T 2fyq_A          144 DLGTIPGDCGAPYVHKR---GNDWVVCGVHAAAT  174 (194)
T ss_dssp             ----CGGGTTCEEEEEE---TTEEEEEEEEEEEC
T ss_pred             cCCCCCCCCCCceEEee---CCceEEEEEEEeec
Confidence            34567899999999888   89999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	286
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	5e-58
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	2e-57
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	3e-53
d1xx9a_	237	b.47.1.2 (A:) Coagulation factor XI {Human (Homo s	3e-52
d1eaxa_	241	b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapien	6e-52
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	8e-52
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	2e-51
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	7e-51
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	2e-49
d1ao5a_	237	b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus)	2e-48
d1j16a_	223	b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicu	6e-48
d1bioa_	228	b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxI	2e-47
g1h8d.1	289	b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [T	2e-47
d2fpza1	243	b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sap	3e-47
d1gdna_	224	b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxyspo	2e-46
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	2e-46
d2bz6h1	254	b.47.1.2 (H:16-257) Coagulation factor VIIa {Human	3e-45
g1fiw.1	274	b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries)	5e-45
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	6e-45
d1fxya_	228	b.47.1.2 (A:) Coagulation factor Xa-trypsin chimer	8e-45
d1mzaa_	240	b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [Ta	9e-45
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	9e-45
d1rjxb_	247	b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Hum	1e-44
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	2e-44
d1gvkb_	240	b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9	7e-44
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	9e-44
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	9e-44
g1rtf.1	260	b.47.1.2 (A:,B:) Two-chain tissue plasminogen acti	3e-43
g1gj7.1	256	b.47.1.2 (A:,B:) Urokinase-type plasminogen activa	7e-43
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	8e-43
d1tona_	235	b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 1	1e-42
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	1e-42
d1brup_	241	b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9	2e-42
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	2e-42
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	2e-42
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	2e-41
d1fq3a_	227	b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [Ta	2e-41
d1m9ua_	241	b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [Tax	5e-41
d1eq9a_	222	b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Re	2e-40
d1op0a_	234	b.47.1.2 (A:) Venom serine protease {Hundred-pace	2e-40
d1elta_	236	b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxI	4e-40
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	4e-40
d1si5h_	234	b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human	9e-40
d1hj9a_	223	b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [Tax	1e-39
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	2e-39
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	2e-39
d1a7sa_	225	b.47.1.2 (A:) Heparin binding protein, HBP {Human	9e-39
d1fuja_	221	b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapie	5e-38
d2qy0b1	240	b.47.1.2 (B:447-686) Complement C1R protease, cata	2e-37
d1elva1	259	b.47.1.2 (A:410-668) Complement C1S protease, cata	3e-37
d1nn6a_	224	b.47.1.2 (A:) Chymase (mast cell protease I) {Huma	1e-36
d1q3xa1	242	b.47.1.2 (A:445-686) Mannan-binding lectin serine	2e-36
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	5e-36
d1os8a_	223	b.47.1.1 (A:) Trypsin {Streptomyces griseus, strai	3e-35
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	3e-34
d1arba_	263	b.47.1.1 (A:) Achromobacter protease {Achromobacte	3e-29
d1p3ca_	215	b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int	6e-28
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	2e-26
d1hpga_	187	b.47.1.1 (A:) Glutamic acid-specific protease {Str	3e-18
d2o8la1	216	b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur	2e-13
d1agja_	242	b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A	1e-06
d1qtfa_	246	b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus	4e-05

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  184 bits (467), Expect = 5e-58
 Identities = 86/241 (35%), Positives = 118/241 (48%), Gaps = 13/241 (5%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG+   LG WPW ++L  DG   CGG +L   WV+TAAHC     +            
Sbjct: 1   IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAV 60

Query: 106 FSFSPTEQVRPVSRIVMHSM------FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVT 159
              SP      V  +V H            E +ND+AL+ L++PL    Y++P+CLP   
Sbjct: 61  AQASPHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAG 120

Query: 160 ETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP------ACKHYEDRIADVICAGMP 213
           +       CT  GWG    +G     ++E +VPI+       A  +       + CAG P
Sbjct: 121 QALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYP 180

Query: 214 QGGRDTCQGDSGGPLLCPVPGSQ-GRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           +GG D CQGDSGGP +C    S+  RW + G+VS G GCA   +PGVYT+VS F  W+  
Sbjct: 181 EGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQ 240

Query: 273 N 273
            
Sbjct: 241 A 241

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  182 bits (462), Expect = 2e-57
 Identities = 87/236 (36%), Positives = 127/236 (53%), Gaps = 11/236 (4%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKH---YFEVYAGM 102
           +VGG  +  GAWPW++ALY D    CG  ++   W+++AAHCV G       +  V    
Sbjct: 1   IVGGSDSREGAWPWVVALYFDDQQVCGASLVSRDWLVSAAHCVYGRNMEPSKWKAVLGLH 60

Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
           +     SP  + R + +IV++  + +    ND+A++ L   + Y  Y++PICLP+  +  
Sbjct: 61  MASNLTSPQIETRLIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVF 120

Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACK-----HYEDRIADVICAGMPQGGR 217
            P   C+  GWGA+   G   D ++E  VP+L   K        +   +++CAG   GG 
Sbjct: 121 PPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQMPEYNITENMVCAGYEAGGV 180

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           D+CQGDSGGPL+C       RW +AGV S G  CA PN PGVY RV +F  W+ S 
Sbjct: 181 DSCQGDSGGPLMC---QENNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQSF 233

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score =  171 bits (434), Expect = 3e-53
 Identities = 90/241 (37%), Positives = 132/241 (54%), Gaps = 17/241 (7%)

Query: 46  VVGGKKAELGAWPWLIALYRD----GFFHCGGVVLDESWVMTAAHCVDGFEKHY---FEV 98
           +VGG  A LG +P+ ++         F  CG  + +E++ +TA HCV G +       ++
Sbjct: 1   IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQI 60

Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV 158
            AG L       +EQ+  VS+I++H  F    + ND++LL+L+  L +N  V PI     
Sbjct: 61  VAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIA--LP 118

Query: 159 TETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK--HYEDRIAD-VICAGMP 213
            +           GWG   E G  PD +++V VP++    C+  +  D I D +ICAG+P
Sbjct: 119 EQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAGVP 178

Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           +GG+D+CQGDSGGPL     G     Y+AG+VS G GCARP  PGVYT VS  V W+ +N
Sbjct: 179 EGGKDSCQGDSGGPLAASDTG---STYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKAN 235

Query: 274 S 274
           +
Sbjct: 236 A 236

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  168 bits (426), Expect = 3e-52
 Identities = 79/239 (33%), Positives = 121/239 (50%), Gaps = 12/239 (5%)

Query: 46  VVGGKKAELGAWPWLIALYRDGF---FHCGGVVLDESWVMTAAHCVDGF-EKHYFEVYAG 101
           +VGG  +  G WPW + L+         CGG ++   W++TAAHC  G        VY+G
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60

Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
           +L +           V  I++H  +K AE   D+ALL+L   + Y    RPICLP   + 
Sbjct: 61  ILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDR 120

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK---HYEDRIADVICAGMPQGG 216
              Y+ C   GWG         + +++ ++P++    C+           +ICAG  +GG
Sbjct: 121 NVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGG 180

Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE 275
           +D C+GDSGGPL C        W++ G+ S GEGCA+   PGVYT V ++V W++  ++
Sbjct: 181 KDACKGDSGGPLSCK---HNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ 236

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  168 bits (425), Expect = 6e-52
 Identities = 81/241 (33%), Positives = 121/241 (50%), Gaps = 14/241 (5%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFH-CGGVVLDESWVMTAAHCVDGFEK-------HYFE 97
           VVGG  A+ G WPW ++L+  G  H CG  ++  +W+++AAHC              +  
Sbjct: 1   VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60

Query: 98  VYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD 157
                 +    +P  Q R + RI+ H  F       D+ALL+L  P  Y+  VRPICLPD
Sbjct: 61  FLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPD 120

Query: 158 VTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHY--EDRIADVICAGMP 213
            +            GWG     G     +++ ++ ++    C++   +     ++C G  
Sbjct: 121 ASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQITPRMMCVGFL 180

Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
            GG D+CQGDSGGPL      + GR + AGVVS G+GCA+ N+PGVYTR+  F  W+  N
Sbjct: 181 SGGVDSCQGDSGGPLSSV--EADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN 238

Query: 274 S 274
           +
Sbjct: 239 T 239

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score =  167 bits (423), Expect = 8e-52
 Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 18/232 (7%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG + +  + P  ++L   G+  CGG +++E+WV++AAHC     +     +      
Sbjct: 1   IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCYKSRVEVRLGEH----NI 55

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                +EQ    SR++ H  +    + ND+ L++L+ P   N YV+P+ LP  T      
Sbjct: 56  KVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALP--TSCAPAG 113

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPAC---KHYEDRIADV-ICAGMPQGGRDTCQ 221
           + CT  GWG       D + ++ + +PIL        Y   I +   CAG  +GG+D+CQ
Sbjct: 114 TMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQ 173

Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           GDSGGP++C          + GVVS G GCA P  PGVY +V  F  WL S 
Sbjct: 174 GDSGGPVVC-------NGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 218

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (417), Expect = 7e-51
 Identities = 85/236 (36%), Positives = 126/236 (53%), Gaps = 13/236 (5%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           VVGG+ A+ G +PW + L       CGG +++E W++TAAHCV+   K    V AG    
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKIT--VVAGEHNI 58

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTND--LALLQLAAPLRYNRYVRPIC--LPDVTET 161
                TEQ R V RI+ H  +  A    +  +ALL+L  PL  N YV PIC    + T  
Sbjct: 59  EETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNI 118

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACK---HYEDRIAD-VICAGMPQGGR 217
              + +    GWG VF  G     ++ ++VP++         +  I + + CAG  +GGR
Sbjct: 119 FLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGR 178

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           D+CQGDSGGP +  V   +G  ++ G++S GE CA   + G+YT+VS++V W+   
Sbjct: 179 DSCQGDSGGPHVTEV---EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEK 231

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  159 bits (401), Expect = 2e-48
 Identities = 85/245 (34%), Positives = 128/245 (52%), Gaps = 30/245 (12%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           VVGG   E  + PW +A+Y      CGGV+LD +WV+TAAHC        +EV+ G  + 
Sbjct: 1   VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYVD----QYEVWLGKNKL 56

Query: 106 FSFSPTEQVRPVSRI-----------VMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPIC 154
           F   P+ Q R VS+            ++ ++   A+ ++DL LL+L+ P      V+PI 
Sbjct: 57  FQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIA 116

Query: 155 LPDVTETPEPYSTCTAVGWGAVFEHGP-DPDHMREVQVPILPA---CKHYEDRIAD-VIC 209
           LP  T+ P+P S C A GWG++       PD ++ V + +LP     K Y  ++ D ++C
Sbjct: 117 LP--TKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQKVTDVMLC 174

Query: 210 AGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVP 268
           AG   GG+DTC+ DSGGPL+C          + G  S+G   C +P  P +YT + +F  
Sbjct: 175 AGEMGGGKDTCRDDSGGPLIC-------DGILQGTTSYGPVPCGKPGVPAIYTNLIKFNS 227

Query: 269 WLMSN 273
           W+   
Sbjct: 228 WIKDT 232

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  157 bits (397), Expect = 6e-48
 Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 19/233 (8%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG   +  + P+ ++L   G+  CGG ++++ WV++AAHC     +     +      
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEH----NI 55

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    ++I+ H  F R    ND+ L++L++P++ N  V  + LP  +      
Sbjct: 56  NVLEGNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALP--SSCAPAG 113

Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP--ACKHYEDRI--ADVICAGMPQGGRDTC 220
           + C   GWG     G + PD ++ +  P+LP   C+     I   +++C G  +GG+D C
Sbjct: 114 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASSSFIITDNMVCVGFLEGGKDAC 173

Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           QGDSGGP++C          + G+VS G GCA P+ PGVYT+V  +V W+   
Sbjct: 174 QGDSGGPVVC-------NGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDT 219

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (393), Expect = 2e-47
 Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 12/232 (5%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG++AE  A P++ ++  +G   CGGV++ E WV++AAHC++       +V  G    
Sbjct: 1   ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSL 60

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               P++++  V R V H   +   + +DL LLQL+        VRP+    V     P 
Sbjct: 61  SQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPG 120

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP----ACKHYEDRIADVICAGMPQGGRDTCQ 221
           + C   GWG V   G  PD ++ V +P+L       + + D              RD+C+
Sbjct: 121 TLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNRRDSCK 180

Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPWLMS 272
           GDSGGPL+C          + GVV+ G   C    +PG+YTRV+ +  W+ S
Sbjct: 181 GDSGGPLVC-------GGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 225

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  156 bits (394), Expect = 3e-47
 Identities = 89/244 (36%), Positives = 127/244 (52%), Gaps = 20/244 (8%)

Query: 46  VVGGKKAELGAWPWLIALYRDG---FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG++A    WPW ++L   G      CGG ++   WV+TAAHCV    K    +   +
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQL 60

Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
            R       +Q+ PVSRI++H  F  A++  D+ALL+L  P++ + +V  + LP  +ET 
Sbjct: 61  -REQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETF 119

Query: 163 EPYSTC--TAVGWGAVFEHGPDPDHMREVQVPILP--ACKHY---------EDRIADVIC 209
            P   C  T  G     E  P P  +++V+VPI+    C            + RI     
Sbjct: 120 PPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDM 179

Query: 210 AGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
                  RD+CQGDSGGPL+C      G W  AGVVS GEGCA+PN PG+YTRV+ ++ W
Sbjct: 180 LCAGNTRRDSCQGDSGGPLVCK---VNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDW 236

Query: 270 LMSN 273
           +   
Sbjct: 237 IHHY 240

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

 Score =  153 bits (387), Expect = 2e-46
 Identities = 79/235 (33%), Positives = 118/235 (50%), Gaps = 17/235 (7%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG  A  G +P+++++ R+G   CGG +L+ + V+TAAHCV G+ +  F++ AG L R
Sbjct: 1   IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSR 60

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
            S   T  +  V     +S        NDLA+L+L+  +     +    L      P   
Sbjct: 61  TSGGITSSLSSVRVHPSYSG-----NNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAG 115

Query: 166 STCTAVGWGAVFEHGPD-PDHMREVQVPILP-----ACKHYEDRIADVICAGMPQGGRDT 219
           S+ T  GWGA  E G   P ++ +V VPI+      A          + CAG+  GG+D+
Sbjct: 116 SSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDS 175

Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNS 274
           CQGDSGGP++           + G VS G GCARPN  GVY  V     ++ + +
Sbjct: 176 CQGDSGGPIVD------SSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTYA 224

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  154 bits (388), Expect = 2e-46
 Identities = 67/242 (27%), Positives = 106/242 (43%), Gaps = 15/242 (6%)

Query: 43  SGRVVGGKKAELGAWPWLIALY----RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEV 98
           S RVVGG+ A   +WPW I+L           CGG ++  + V+TAAHC+     +   +
Sbjct: 11  SARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISNTLTYRVAL 70

Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV 158
                             V  I +H  +    + ND+AL++LA  +     ++  CLP  
Sbjct: 71  G-KNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSE 129

Query: 159 TETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK---HYEDRIADVICAGMP 213
                    C   GWG ++ +GP    +++   P++    C     +   + + +     
Sbjct: 130 GSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGG 189

Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG--CARPNEPGVYTRVSQFVPWLM 271
            G    C GDSGGPL C    + G+W V G+VS G G  C    +P V+TRVS ++ W+ 
Sbjct: 190 DGVISACNGDSGGPLNCQ---ADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWIN 246

Query: 272 SN 273
             
Sbjct: 247 QK 248

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (381), Expect = 3e-45
 Identities = 77/241 (31%), Positives = 114/241 (47%), Gaps = 16/241 (6%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGMLR 104
           +VGGK    G  PW + L  +G   CGG +++  WV++AAHC D  +         G   
Sbjct: 1   IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHD 60

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE---T 161
                  EQ R V+++++ S +      +D+ALL+L  P+    +V P+CLP+ T    T
Sbjct: 61  LSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERT 120

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKH---------YEDRIADVICAGM 212
                     GWG + + G     +  + VP L                +    + CAG 
Sbjct: 121 LAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGY 180

Query: 213 PQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
             G +D+C+GDSGGP        +G WY+ G+VS G+GCA     GVYTRVSQ++ WL  
Sbjct: 181 SDGSKDSCKGDSGGPHAT---HYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQK 237

Query: 273 N 273
            
Sbjct: 238 L 238

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  149 bits (377), Expect = 6e-45
 Identities = 70/233 (30%), Positives = 106/233 (45%), Gaps = 28/233 (12%)

Query: 57  WPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQV-- 114
            PW +A+YR   + CGGV+LD +WV+TAAHC +      ++V+ G        P++Q   
Sbjct: 3   QPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYND----KYQVWLGKNNFLEDEPSDQHRL 58

Query: 115 ---------RPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                      +S +  H+     + +NDL LL+L+ P      V+PI LP   E     
Sbjct: 59  VSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPT-EEPKLGS 117

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP----ACKHYEDRIADVICAGMPQGGRDTCQ 221
           +   +            PD ++ V + +LP       H       ++CAG   GG  TC+
Sbjct: 118 TCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCE 177

Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPWLMSN 273
            DSGGPL+C          + G+ S G E C  P EP VYT++ +F  W+   
Sbjct: 178 HDSGGPLIC-------DGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRET 223

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

 Score =  149 bits (376), Expect = 8e-45
 Identities = 78/234 (33%), Positives = 120/234 (51%), Gaps = 17/234 (7%)

Query: 46  VVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           +VGG   + G  PW   L   +    CGG +L E +++TAAHC+   ++    V      
Sbjct: 1   IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTE 60

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
           +      E V  V  ++ H+ F +     D+A+L+L  P+ +   V P  LP  T  P  
Sbjct: 61  QEE--GGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLP--TAPPAT 116

Query: 165 YSTCTAVGWGAVFEHGPD-PDHMREVQVPILPACK---HYEDRI-ADVICAGMPQGGRDT 219
            + C   GWG     G D PD ++ +  P+L   K    Y  +I +++ C G  +GG+D+
Sbjct: 117 GTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDS 176

Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           CQGDSGGP++C          + GVVS G+GCA+ N+PGVYT+V  +V W+ + 
Sbjct: 177 CQGDSGGPVVC-------NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNT 223

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (377), Expect = 9e-45
 Identities = 62/239 (25%), Positives = 110/239 (46%), Gaps = 17/239 (7%)

Query: 45  RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFE-VYAGML 103
            ++GGK+    + P++ ++   G   CGGV++D  WV+TAAHC   F K     V  G  
Sbjct: 2   EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAH 61

Query: 104 RRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE 163
                  ++Q   + + +  S       +ND+ L++L    + N++V+ + +   T    
Sbjct: 62  SLSKNEASKQTLEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRS 121

Query: 164 PYSTCTAVGWGAVFEHGPDPDHMREVQVPILP-----ACKHYEDRI---ADVICAGMPQG 215
                         +     D +REV V +L      +  +Y        D++CAG  +G
Sbjct: 122 GTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKG 181

Query: 216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQ-FVPWLMSN 273
            +D+C+GD+GGPL+C       +     +VS G  C    +PG+YT +++ +  W+ SN
Sbjct: 182 QKDSCKGDAGGPLIC-------KGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSN 233

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  149 bits (376), Expect = 9e-45
 Identities = 65/238 (27%), Positives = 107/238 (44%), Gaps = 21/238 (8%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++ G++    + PW  AL++     CGGV++ + WV+TAAHC     K  + V  G    
Sbjct: 1   ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCK----KQKYSVRLGDHSL 56

Query: 106 FSFSPTEQVRPVSRIVMHS---MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
            S    EQ   V++ + H         + ++D+ L++L         V+P+        P
Sbjct: 57  QSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQ--LANLCP 114

Query: 163 EPYSTCTAVGWGAV-FEHGPDPDHMREVQVPILPACK---HYEDRIADVICAGMPQGGRD 218
           +    C   GWG V       P+ +   +V I    K    Y  +I + +       G D
Sbjct: 115 KVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITEGMVCAGSSNGAD 174

Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPWLMSNSE 275
           TCQGDSGGPL+C          + G+ S G + C +P +PGVYT++ ++  W+    +
Sbjct: 175 TCQGDSGGPLVC-------DGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD 225

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 247

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (377), Expect = 1e-44
 Identities = 80/243 (32%), Positives = 110/243 (45%), Gaps = 16/243 (6%)

Query: 38  NPILGSGRVVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYF 96
            P    G VVGG  A   +WPW ++L  R G   CGG ++   WV+TAAHC+        
Sbjct: 10  EPKKCPGAVVGGCVAYPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCL-----EKS 64

Query: 97  EVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLP 156
              +             + P  + +  S         D+ALL+L++P      V P CLP
Sbjct: 65  PRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLP 124

Query: 157 DVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP------ACKHYEDRIADVICA 210
                    + C   GWG           M E Q+P++                +  +CA
Sbjct: 125 SPNYVVADRTECFITGWGETQGTFGAGLLM-EAQLPVIENKVCNRYEFLNGRVQSTELCA 183

Query: 211 GMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           G   GG D+CQGDSGGPL+C     + ++ + GV S G GCARPN+PGVY RVS+FV W+
Sbjct: 184 GHLAGGTDSCQGDSGGPLVC---FEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI 240

Query: 271 MSN 273
              
Sbjct: 241 EGV 243

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (375), Expect = 2e-44
 Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 19/242 (7%)

Query: 46  VVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           ++ GK    G  PW + L        CG V++  SWV+TAAHC+D  +K       G   
Sbjct: 1   LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLLV--RLGEYD 58

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP-- 162
              +   E    +  + +H  + ++   ND+ALL LA P   ++ + PICLPD       
Sbjct: 59  LRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERE 118

Query: 163 --EPYSTCTAVGWGAVFEHGPDPDHMREV-----QVPILPACK----HYEDRIADVICAG 211
             +        GWG       +    R       ++P++P  +           +++CAG
Sbjct: 119 LNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAG 178

Query: 212 MPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLM 271
           +    +D C+GDSGGP++       G W++ G+VS GEGC   +  GVYT+VS+++ W+ 
Sbjct: 179 ILGDRQDACEGDSGGPMVA---SFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIH 235

Query: 272 SN 273
            +
Sbjct: 236 GH 237

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  147 bits (371), Expect = 7e-44
 Identities = 69/239 (28%), Positives = 105/239 (43%), Gaps = 14/239 (5%)

Query: 46  VVGGKKAELGAWPWLIALY----RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           VVGG +A+  +WP  I+L           CGG ++ ++WVMTAAHCVD        V   
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFRVVVGEH 60

Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
            L + + +          +  +          D+ALL+LA  +  N YV+   LP     
Sbjct: 61  NLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTI 120

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACK-----HYEDRIADVICAGMPQGG 216
               S C   GWG    +G     +++  +P +         ++   + + +      G 
Sbjct: 121 LANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGV 180

Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWLMSN 273
           R  CQGDSGGPL C V    G++ V GV S     GC    +P V+TRVS ++ W+ + 
Sbjct: 181 RSGCQGDSGGPLHCLVN---GQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNV 236

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score =  146 bits (369), Expect = 9e-44
 Identities = 62/232 (26%), Positives = 100/232 (43%), Gaps = 13/232 (5%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG +A   +WP   AL+ D  + CGG ++   W++TAAHC+DG    + +V  G    
Sbjct: 1   IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGA--GFVDVVLGAHNI 58

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                T+     +   +H  +    ++ND+A+++L  P+     +  + LP         
Sbjct: 59  REDEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVGVGTV 118

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRIADVICAGMPQGGRDTCQGD 223
            T T  G  +        D +R+V VPI+    C      + D        GG+ TC GD
Sbjct: 119 VTPTGWGLPS-DSALGISDVLRQVDVPIMSNADCDAVYGIVTDGNICIDSTGGKGTCNGD 177

Query: 224 SGGPLLCPVPGSQGRWYVAGVVSHGEGCA-RPNEPGVYTRVSQFVPWLMSNS 274
           SGGPL              G+ S G         P  +TRV+ F+ W+ + +
Sbjct: 178 SGGPLNY-------NGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQT 222

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (369), Expect = 9e-44
 Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 13/236 (5%)

Query: 46  VVGGKKAELGAWPWLIAL-YRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           +VGG++ + G  PW   L   +    CGG +L E +++TAAHC+   ++    V      
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTE 60

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD---VTET 161
           +      E V  V  ++ H+ F +     D+A+L+L  P+ +   V P CLP+      T
Sbjct: 61  QEE--GGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAEST 118

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDR----IADVICAGMPQGGR 217
                T    G+G   E G     ++ ++VP +               ++ CAG      
Sbjct: 119 LMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQE 178

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           D CQGDSGGP +      +  ++V G+VS GEGCAR  + G+YT+V+ F+ W+  +
Sbjct: 179 DACQGDSGGPHVT---RFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 231

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (362), Expect = 8e-43
 Identities = 70/233 (30%), Positives = 116/233 (49%), Gaps = 19/233 (8%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +V G   +  + P+  ALY  G   CGGV++   WV+TAAHC     K   +V+ G    
Sbjct: 1   LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCK----KPNLQVFLGKHNL 56

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                +++   V R V+H  +  A    D+ LL+LA P + +  ++P+      +     
Sbjct: 57  RQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLP--LERDCSANT 114

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-YEDRIAD-VICAGMPQGGRDTCQ 221
           ++C  +GWG   +    PD ++   + ++    C+H Y  +I   ++CAG  + G+D+CQ
Sbjct: 115 TSCHILGWGKTADGDF-PDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQ 173

Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSN 273
           GDSGGPL+C         ++ G+VS G   C    +PGVYT V ++  W+   
Sbjct: 174 GDSGGPLVC-------GDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKT 219

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score =  144 bits (362), Expect = 1e-42
 Identities = 73/244 (29%), Positives = 107/244 (43%), Gaps = 30/244 (12%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG K E  + PW +A+  +  + CGGV++D SWV+TAAHC     +       G    
Sbjct: 1   IVGGYKCEKNSQPWQVAVINE--YLCGGVLIDPSWVITAAHCYSNNYQVLL----GRNNL 54

Query: 106 FSFSPTEQVRPVSRIVMHSM-----------FKRAEMTNDLALLQLAAPLRYNRYVRPIC 154
           F   P  Q R V +   H                 + +NDL LL L+ P      V+ I 
Sbjct: 55  FKDEPFAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVID 114

Query: 155 LPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK-HYEDRIADV-ICA 210
           LP            +  G             ++ V + +L    C   Y+D + DV +CA
Sbjct: 115 LPTKEPKVGSTCLASGWGST-NPSEMVVSHDLQCVNIHLLSNEKCIETYKDNVTDVMLCA 173

Query: 211 GMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPW 269
           G  +GG+DTC GDSGGPL+C          + G+ S G   CA+P  P +Y ++ +F  W
Sbjct: 174 GEMEGGKDTCAGDSGGPLIC-------DGVLQGITSGGATPCAKPKTPAIYAKLIKFTSW 226

Query: 270 LMSN 273
           +   
Sbjct: 227 IKKV 230

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score =  143 bits (361), Expect = 1e-42
 Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 20/234 (8%)

Query: 46  VVGGKKAELGAWPWLIAL----YRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           ++GG ++   + P++  L     +     CGG ++   +V+TAAHC    +     V  G
Sbjct: 1   IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHC----KGREITVILG 56

Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
                    T+Q   V + ++H  +      +D+ LL+L   +     V  + LP  ++ 
Sbjct: 57  AHDVRKRESTQQKIKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDF 116

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADV---ICAGMPQGGRD 218
             P + C A GWG      P    +REV++ I+      + R  +    +C G P   R 
Sbjct: 117 IHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYYEYKFQVCVGSPTTLRA 176

Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
              GDSGGPLLC            G+VS+G   A+P  P ++TRVS +VPW+ +
Sbjct: 177 AFMGDSGGPLLC-------AGVAHGIVSYGHPDAKP--PAIFTRVSTYVPWINA 221

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  144 bits (362), Expect = 2e-42
 Identities = 70/239 (29%), Positives = 110/239 (46%), Gaps = 13/239 (5%)

Query: 46  VVGGKKAELGAWPWLIALYRDG----FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           VVGG+ A   +WPW ++L  D        CGG ++D+SWV+TAAHC+     +   +   
Sbjct: 1   VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRTYRVVLGRH 60

Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
            L                +       +    ND+ALL+LA+P+     ++  CLP     
Sbjct: 61  SLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTI 120

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP-----ACKHYEDRIADVICAGMPQGG 216
                 C   GWG +  +G  PD +++ Q+ ++          +   +   +      G 
Sbjct: 121 LPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGGDGI 180

Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWLMSN 273
             +C GDSGGPL C   G+ G+W V G+VS G   GC   ++P V+TRVS ++ W+ S 
Sbjct: 181 ISSCNGDSGGPLNC--QGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSV 237

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (361), Expect = 2e-42
 Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 21/239 (8%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG +    + P+++ L  D    C G ++ + WV+TAAHC              + R 
Sbjct: 1   IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKRSQVILGAHSITRE 60

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               PT+Q+  V +   +  +  A    DL LLQL    + N+YV  + LP   +  +P 
Sbjct: 61  ---EPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPG 117

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK-----HYEDRIAD-VICAGMPQGGR 217
           + C   GWG         D +REV++ I+    C      ++   I   ++CAG  +GGR
Sbjct: 118 TMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGR 177

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG--EGCARPNEPGVYTRVSQ-FVPWLMSN 273
           D+C GDSG PLLC            GV S G    C  P  PGVY  +S+  + W++  
Sbjct: 178 DSCNGDSGSPLLC-------EGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMT 229

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  143 bits (360), Expect = 2e-42
 Identities = 66/240 (27%), Positives = 117/240 (48%), Gaps = 22/240 (9%)

Query: 46  VVGGKKAELGAWPWLIALY----RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           ++GG +A+  + P++  L       G   CGG ++ E +V+TAAHC         +V  G
Sbjct: 1   IIGGHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAHC----SGSKIQVTLG 56

Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
                     +Q+ PV +I+ H  +    ++ND+ LL+L +  + +  V+P+ LP     
Sbjct: 57  AHNIKEQEKMQQIIPVVKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVK 116

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPA---CKHYEDRIADV--ICAGMPQGG 216
            +P   C   GWG +   G   D ++EV++ +        + ++       ICAG P+  
Sbjct: 117 VKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYLKNYFDKANEICAGDPKIK 176

Query: 217 RDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER 276
           R + +GDSGGPL+C       +   AG+VS+G+     + P  +T+VS F+ W+    ++
Sbjct: 177 RASFRGDSGGPLVC-------KKVAAGIVSYGQNDG--STPRAFTKVSTFLSWIKKTMKK 227

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  141 bits (354), Expect = 2e-41
 Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 14/229 (6%)

Query: 57  WPWLIALYRDG----FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTE 112
           W W ++L  +        CGG ++   WV+TA HC+     +   +          S   
Sbjct: 2   WSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRTYQVVLGEYDRSVLEGSEQV 61

Query: 113 QVRPVSRIVMHSMFKRAEMTND--LALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTA 170
                  + +H ++    +     +AL++L+   +    V+   LP   +     + C  
Sbjct: 62  IPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYI 121

Query: 171 VGWGAVFEHGPDPDHMREVQVPILP----ACKHYEDRIADVICAGMPQGGRDTCQGDSGG 226
            GWG ++  GP PD +++  +P +     +   +                R  C GDSGG
Sbjct: 122 SGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAGGDTRSGCNGDSGG 181

Query: 227 PLLCPVPGSQGRWYVAGVVS--HGEGCARPNEPGVYTRVSQFVPWLMSN 273
           PL C  P + G W V GV S     GC    +P V+TRVS F+ W+   
Sbjct: 182 PLNC--PAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDET 228

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (353), Expect = 2e-41
 Identities = 65/239 (27%), Positives = 106/239 (44%), Gaps = 21/239 (8%)

Query: 46  VVGGKKAELGAWPWLIALY---RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           ++GG +A+  + P++  L    +     CGG ++ + +V+TAAHC           +   
Sbjct: 1   IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIQDDFVLTAAHCWGSSINVTLGAHNIK 60

Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
            +  +     Q  PV R + H  +     +ND+ LLQL    +  R V+P+ LP      
Sbjct: 61  EQEPTQ----QFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQV 116

Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYED-----RIADVICAGMPQGGR 217
           +P  TC+  GWG     G     ++EV++ +    K   D          +C G P+  +
Sbjct: 117 KPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKK 176

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER 276
            + +GDSGGPL+C            G+VS+G     P  P   T+VS FV W+    +R
Sbjct: 177 TSFKGDSGGPLVC-------NKVAQGIVSYGRNNGMP--PRACTKVSSFVHWIKKTMKR 226

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

 Score =  140 bits (352), Expect = 5e-41
 Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 12/241 (4%)

Query: 46  VVGGKKAELGAWPWLIALYRDGF---FHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           V+GG  A  G +PW ++  R        CG  +L  +  ++A+HCVDG   +   V AG+
Sbjct: 1   VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGL 60

Query: 103 LRRFSFSPTEQVRPVS-RIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
            ++   S T+     S  +  +     A  +ND+A+L LA  +     ++   LP     
Sbjct: 61  WQQSDTSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNN 120

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--------ACKHYEDRIADVICAGMP 213
               +TC   GWG        PD +++  +P++               +   + IC   P
Sbjct: 121 DYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDP 180

Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
            G    C GDSGGPL CP  G++     + VVS G G   P+ P VYTRVS ++ W+  N
Sbjct: 181 AGNTGACNGDSGGPLNCPDGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGDN 240

Query: 274 S 274
           S
Sbjct: 241 S 241

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

 Score =  138 bits (347), Expect = 2e-40
 Identities = 75/233 (32%), Positives = 116/233 (49%), Gaps = 13/233 (5%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGGK A +G +P+ ++L   G   CG  +LD + V+TAAHCVDG            +  
Sbjct: 1   IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLN--RLKVHVGT 58

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
              S +  V  V   V++  +    + ND+AL+ L  P+++N  V+PI      +     
Sbjct: 59  NYLSESGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIK-LSTNDEDLES 117

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYED--RIADVICAGMPQGGRDTCQGD 223
           + CT  GWG+    G  P+ ++E+++ + P  +   D  R+ D     + + G   C GD
Sbjct: 118 NPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWRVIDSHICTLTKRGEGACHGD 177

Query: 224 SGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER 276
           SGGPL+             G+VS G  CA   EP VYTRVS FV W+ +N ++
Sbjct: 178 SGGPLVA-------NGAQIGIVSFGSPCAL-GEPDVYTRVSSFVSWINANLKK 222

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

 Score =  138 bits (347), Expect = 2e-40
 Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 19/235 (8%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           V+GG + ++    +L+A +    F CGG +++  WV+TAAHC     +    V++  +  
Sbjct: 1   VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDSTDFQMQLGVHSKKVLN 60

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 +   P  + +  +      +  D+ L++L  P+  ++++ P+ LP  +  P   
Sbjct: 61  ---EDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPISNSKHIAPLSLP--SSPPSVG 115

Query: 166 STCTAVG-WGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGM-----PQGGRDT 219
           S C  +G           PD      + +L            +           QGG+DT
Sbjct: 116 SVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAEYRTLCAGIVQGGKDT 175

Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPWLMSN 273
           C GDSGGPL+C            G+VS+G   C +  +PG+YT V  +  W+  N
Sbjct: 176 CGGDSGGPLIC-------NGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRN 223

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Length = 236

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

 Score =  137 bits (345), Expect = 4e-40
 Identities = 68/234 (29%), Positives = 94/234 (40%), Gaps = 13/234 (5%)

Query: 46  VVGGKKAELGAWPWLIALYRDG----FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           VVGG+ A+  +WPW I+L        +  CGG ++ + WVMTAAHCVD        +   
Sbjct: 1   VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSARTWRVVLGEH 60

Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
            L                I             D+ALL+L      N  V+   LP   + 
Sbjct: 61  NLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQI 120

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP----ACKHYEDRIADVICAGMPQGGR 217
               + C   GWG     GP  D +++  +P +     +   +              G  
Sbjct: 121 LPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCAGGGAN 180

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVS--HGEGCARPNEPGVYTRVSQFVPW 269
             C GDSGGPL C V    G +YV GV S     GC    +P V+TRVS ++ W
Sbjct: 181 SGCNGDSGGPLNCQV---NGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISW 231

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  137 bits (345), Expect = 4e-40
 Identities = 68/248 (27%), Positives = 106/248 (42%), Gaps = 30/248 (12%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           ++GG + E  + PW +A+Y  G F CGGV++   WV+TAAHC+    + +     G    
Sbjct: 1   IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMSDDYQIWL----GRHNL 56

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRA-----------EMTNDLALLQLAAPLRYNRYVRPIC 154
                T Q   VS   +   F  +           ++++DL LL+LA P R    V+ + 
Sbjct: 57  SKDEDTAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILD 116

Query: 155 LPDVTETPEPYSTCTAVGWGAVFEHGPDPDH-MREVQVPILP----ACKHYEDRIADVIC 209
               T+ P+  STC   GWG +          ++ V++ +      A  + E     V+C
Sbjct: 117 --LPTQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPEKMTEFVLC 174

Query: 210 AGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVP 268
           A         C GDSGG L+C            G+ S G   CA  N+  V+T+V     
Sbjct: 175 ATHRDDSGSICLGDSGGALIC-------DGVFQGITSWGYSECADFNDNFVFTKVMPHKK 227

Query: 269 WLMSNSER 276
           W+    E+
Sbjct: 228 WIKETIEK 235

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (343), Expect = 9e-40
 Identities = 61/232 (26%), Positives = 93/232 (40%), Gaps = 13/232 (5%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           VV G         W+++L       CGG ++ ESWV+TA  C    +   +E + G+   
Sbjct: 1   VVNGIPTR-TNIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDV 59

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                        +++  S        +DL L++LA P   + +V  I LP+   T    
Sbjct: 60  HGRGD----EKCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEK 115

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVP-----ILPACKHYEDRIADVICAGMPQGGRDTC 220
           ++C+  GWG       D                    +         ICAG  + G   C
Sbjct: 116 TSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPC 175

Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS 272
           +GD GGPL+C          V GV+  G GCA PN PG++ RV+ +  W+  
Sbjct: 176 EGDYGGPLVC---EQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHK 224

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  135 bits (341), Expect = 1e-39
 Identities = 64/232 (27%), Positives = 103/232 (44%), Gaps = 17/232 (7%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG        P+ ++L   G+  CGG +++  WV++AAHC     +       G    
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSGIQVRL----GEDNI 55

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                 EQ    S+ ++H  +    + ND+ L++L +    N  V  I     +      
Sbjct: 56  NVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASIS-LPTSCASAGT 114

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK-HYEDRIAD-VICAGMPQGGRDTCQ 221
               +            PD ++ ++ PIL   +CK  Y  +I   + CA   +G  D+CQ
Sbjct: 115 QCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAYGLEGKGDSCQ 174

Query: 222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           GDSGGP++C          + G+VS G GC   N+PGVYT+V  +V W+   
Sbjct: 175 GDSGGPVVC-------SGKLQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQT 219

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 2e-39
 Identities = 59/274 (21%), Positives = 91/274 (33%), Gaps = 52/274 (18%)

Query: 49  GKKAELGAWPWLIALY----RDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAG-M 102
            K  +    PW   +       G   C G V+ E +V+TAAHC    +K H  +V  G  
Sbjct: 8   RKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGE 67

Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
            R             +               D+AL++L   L+Y + +RPICLP    T 
Sbjct: 68  KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTT 127

Query: 163 E-----PYSTCTAVGWGAVFEHG-------PDPDHMREVQVPILP--------------- 195
                 P +TC       +            +   +   +V I                 
Sbjct: 128 RALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAP 187

Query: 196 ---ACKHYEDRIAD-VICAGMPQG--GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHG- 248
                K   + +    +C G        +TC+GDSGGPL+      + R+   GV+S G 
Sbjct: 188 GYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVH---KRSRFIQVGVISWGV 244

Query: 249 -EGCARPNE--------PGVYTRVSQFVPWLMSN 273
            + C                +  + Q +PWL   
Sbjct: 245 VDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEK 278

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (340), Expect = 2e-39
 Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 14/229 (6%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG++A   AWP++++L   G   CG  ++  ++VM+AAHCV         V  G    
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNL 60

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
               PT Q     + +  + +    + ND+ +LQL      N  V+   LP         
Sbjct: 61  SRREPTRQ-VFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNG 119

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSG 225
             C A+GWG +  +      ++E+ V ++ +     +     +C  +       C GDSG
Sbjct: 120 VQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSN-----VCTLVRGRQAGVCFGDSG 174

Query: 226 GPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSN 273
            PL+C          + G+ S    GCA    P  +  V+QFV W+ S 
Sbjct: 175 SPLVC-------NGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSI 216

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 9e-39
 Identities = 58/224 (25%), Positives = 83/224 (37%), Gaps = 12/224 (5%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           +VGG+KA    +P+L ++   G   CGG ++   +VMTAA C          V  G    
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDL 60

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                  +       +  + +   +  NDL LLQL         V  + LP    T E  
Sbjct: 61  RRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAG 120

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSG 225
           + C   GWG+    G      R V V +       +    + +C G+       C GD G
Sbjct: 121 TRCQVAGWGSQRSGGRLSRFPRFVNVTV----TPEDQCRPNNVCTGVLTRRGGICNGDGG 176

Query: 226 GPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPW 269
            PL+C            GV S   G      P  +TRV+ F  W
Sbjct: 177 TPLVC-------EGLAHGVASFSLGPC-GRGPDFFTRVALFRDW 212

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 5e-38
 Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 17/232 (7%)

Query: 46  VVGGKKAELGAWPWLIALY---RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           +VGG +A+  + P++ +L      G   CGG ++  S+V+TAAHC+    +    V  G 
Sbjct: 1   IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGA 60

Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
               +  PT+Q   V+++ +++        ND+ L+QL++P   +  V  + LP   +  
Sbjct: 61  HNVRTQEPTQQHFSVAQVFLNNYDAE-NKLNDILLIQLSSPANLSASVATVQLPQQDQPV 119

Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQG 222
              + C A+GWG V  H P    ++E+ V +              IC  +P+     C G
Sbjct: 120 PHGTQCLAMGWGRVGAHDPPAQVLQELNVTV-----VTFFCRPHNICTFVPRRKAGICFG 174

Query: 223 DSGGPLLCPVPGSQGRWYVAGVVSHG-EGCARPNEPGVYTRVSQFVPWLMSN 273
           DSGGPL+C          + G+ S    GCA    P  +TRV+ +V W+ S 
Sbjct: 175 DSGGPLIC-------DGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRST 219

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (327), Expect = 2e-37
 Identities = 65/242 (26%), Positives = 103/242 (42%), Gaps = 19/242 (7%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK-------HYFEV 98
           ++GG+KA++G +PW +     G    GG +L + W++TAAH +   E            +
Sbjct: 1   IIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFL 58

Query: 99  YAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDV 158
               +          +R VS    +   +      D+ALL+L   +     + PICLPD 
Sbjct: 59  GHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDN 118

Query: 159 TETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHY-------EDRIADVICAG 211
               +        G+G + E          + V    AC+++       +    ++ CAG
Sbjct: 119 DTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAG 178

Query: 212 MPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLM 271
            P   +D CQGDSGG      P +  RW   G+VS G GC+R    G YT+V  +V W+ 
Sbjct: 179 HPSLKQDACQGDSGGVFAVRDPNT-DRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIK 235

Query: 272 SN 273
             
Sbjct: 236 KE 237

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (327), Expect = 3e-37
 Identities = 62/256 (24%), Positives = 105/256 (41%), Gaps = 27/256 (10%)

Query: 38  NPILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFE 97
            P     R++GG  A++  +PW +          GG +++E WV+TAAH V+G  +    
Sbjct: 6   EPFEEKQRIIGGSDADIKNFPWQVFFDN---PWAGGALINEYWVLTAAHVVEGNREPTMY 62

Query: 98  VYAGMLRRFSFSPTEQVRPVSRIVMHSMFK-------RAEMTNDLALLQLAAPLRYNRYV 150
           V +  ++  S     ++     + +H  +K       R    ND+AL++L  P++    V
Sbjct: 63  VGSTSVQT-SRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTV 121

Query: 151 RPICLPDVTETPEPYSTCTA-VGWGAVFEHGPDPDHMREVQVPILP------------AC 197
            PICLP  +            +      E       ++  ++P+ P              
Sbjct: 122 SPICLPGTSSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLPVAPLRKCKEVKVEKPTA 181

Query: 198 KHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEP 257
                     +     + G D+C+GDSGG      P  + ++Y AG+VS G  C      
Sbjct: 182 DAEAYVFTPNMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGT---Y 238

Query: 258 GVYTRVSQFVPWLMSN 273
           G+YTRV  +V W+M  
Sbjct: 239 GLYTRVKNYVDWIMKT 254

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 1e-36
 Identities = 59/233 (25%), Positives = 95/233 (40%), Gaps = 20/233 (8%)

Query: 48  GGKKAELGAWPWLIALY----RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGML 103
           GG + +  + P++  L           CGG ++  ++V+TAAHC          V  G  
Sbjct: 1   GGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHC----AGRSITVTLGAH 56

Query: 104 RRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPE 163
                  T Q   V +   H  +  + + +D+ LL+L         V  +  P       
Sbjct: 57  NITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVP 116

Query: 164 PYSTCTAVGWGAVFEHGPDPDHMREVQVPILP---ACKHYEDRIADVICAGMPQGGRDTC 220
           P   C   GWG      P  D ++EV++ ++         +      +C G P+  +   
Sbjct: 117 PGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAF 176

Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           +GDSGGPLLC            G+VS+G   A+P  P V+TR+S + PW+   
Sbjct: 177 KGDSGGPLLC-------AGVAQGIVSYGRSDAKP--PAVFTRISHYRPWINQI 220

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 2e-36
 Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 16/240 (6%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           + GG+KA+ G +PW + +   G     G +L ++WV+TAAH V   +     +   M   
Sbjct: 1   IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTL 58

Query: 106 FSFSPTEQVRPVSR-IVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVT-ETPE 163
              SP           +       A   ND+AL++L   +  N  + PICLP    E+  
Sbjct: 59  KRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFM 118

Query: 164 PYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRI----------ADVICAGMP 213
                       + + G    ++  V +PI+   K                A+++CAG+ 
Sbjct: 119 RTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLE 178

Query: 214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMS 272
            GG+D+C+GDSGG L+     +  RW+V G+VS G   C    + GVYT+V  ++PW+ +
Sbjct: 179 SGGKDSCRGDSGGALVFLDSET-ERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIEN 237

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  126 bits (317), Expect = 5e-36
 Identities = 67/235 (28%), Positives = 104/235 (44%), Gaps = 20/235 (8%)

Query: 46  VVGGKKAELGAWPWLIALY---RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           ++GG +A+  + P++  L          CGG ++ E +V+TAAHC+          +   
Sbjct: 1   IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGSSINVTLGAH--- 57

Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
                   T+QV PV R + H  +    + ND+ LL+L         V PI LP      
Sbjct: 58  -NIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEV 116

Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP----ACKHYEDRIADVICAGMPQGGRD 218
           +P   C+  GWG +  + P  D ++EV + +        +         ICAG P   ++
Sbjct: 117 KPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNYIPFTQICAGDPSKRKN 176

Query: 219 TCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           +  GDSGGPL+C            G+VS+G        P VYTR+S F+ W+ S 
Sbjct: 177 SFSGDSGGPLVC-------NGVAQGIVSYGRNDG--TTPDVYTRISSFLSWIHST 222

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score =  124 bits (312), Expect = 3e-35
 Identities = 68/234 (29%), Positives = 96/234 (41%), Gaps = 21/234 (8%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           VVGG +A  G +P+++ L       CGG +  +  V+TAAHCV G   +      G +  
Sbjct: 1   VVGGTRAAQGEFPFMVRLS----MGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
              S +      ++++    +        L         +  + +    L   T T    
Sbjct: 57  L-QSSSAVKVRSTKVLQAPGYNGTGKDWALI--------KLAQPINQPTLKIATTTAYNQ 107

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDRIAD----VICAGMPQGGRDT 219
            T T  GWGA  E G    ++ +  VP +   AC+            +       GG DT
Sbjct: 108 GTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDT 167

Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
           CQGDSGGP+          W   G+VS G GCARP  PGVYT VS F   + S 
Sbjct: 168 CQGDSGGPMFRKDNA--DEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASA 219

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (305), Expect = 3e-34
 Identities = 68/234 (29%), Positives = 102/234 (43%), Gaps = 19/234 (8%)

Query: 46  VVGGKKAELGAWPWLIALY---RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGM 102
           ++GG+++   + P++  L      G   CGG ++ E +V+TAAHC          V  G 
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHC----WGSNINVTLGA 56

Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
                   T+Q     R + H  + +  + ND+ LLQL+  +R NR V P+ LP   E  
Sbjct: 57  HNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGL 116

Query: 163 EPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPA--CKHYEDRIAD-VICAGMPQGGRDT 219
            P + CT  GWG V                       + +        IC G  +  +  
Sbjct: 117 RPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAA 176

Query: 220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN 273
            +GDSGGPLLC            G+VS+G+    P  P V+TRVS F+PW+ + 
Sbjct: 177 FKGDSGGPLLC-------NNVAHGIVSYGKSSGVP--PEVFTRVSSFLPWIRTT 221

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Length = 263

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

 Score =  109 bits (273), Expect = 3e-29
 Identities = 32/238 (13%), Positives = 60/238 (25%), Gaps = 18/238 (7%)

Query: 53  ELGAWPWLI----ALYRDGFFHCGGVVLD------ESWVMTAAHCVDGFEKHYFEVYAGM 102
           E      +I    A  + G   C G +++      + + +TA HC  G       +    
Sbjct: 14  EGDGRRDIIRAVGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVY- 72

Query: 103 LRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETP 162
                 + T +         +     ++  +   +    A   +                
Sbjct: 73  --WNYQNSTCRAPNTPASGANGDGSMSQTQSGSTVKATYATSDFTLLELNNAANPAFNLF 130

Query: 163 EPYSTCTAVGW-GAVFEHGPDPDHMREVQVPILPACKHYEDRIADV-ICAGMPQGGRDTC 220
                     + GA+  H P+    R        +   +        +       G  T 
Sbjct: 131 WAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVTE 190

Query: 221 QGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERAK 278
            G SG P+    P  +    + G  S        N    Y RV        + + R  
Sbjct: 191 PGSSGSPIYS--PEKRVLGQLHGGPSSCSATG-TNRSDQYGRVFTSWTGGGAAASRLS 245

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

 Score =  105 bits (261), Expect = 6e-28
 Identities = 35/236 (14%), Positives = 62/236 (26%), Gaps = 31/236 (13%)

Query: 46  VVGG-----KKAELGAWPWLIALY-RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVY 99
           VV G     K A     P+    Y   G   C G ++  + ++T  HCV       +   
Sbjct: 1   VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAK 60

Query: 100 AGMLRRFSF--SPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPD 157
             +    +   +           V            D A+++    +      R I    
Sbjct: 61  GSVYPGMNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIR--- 117

Query: 158 VTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGR 217
              T    +T    G+              E+   +                  +     
Sbjct: 118 -QVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTR------------EDTNLAYYTI 164

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNE-PGVYTRVSQFVPWLMS 272
           DT  G+SG  +L           + GV + G      N  P       +F+ +  +
Sbjct: 165 DTFSGNSGSAMLD------QNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKA 214

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score =  101 bits (252), Expect = 2e-26
 Identities = 58/238 (24%), Positives = 96/238 (40%), Gaps = 21/238 (8%)

Query: 46  VVGGKKAELGAWPWLIALY----RDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAG 101
           ++ G +A  G +P+   L           CGG ++D  W++TAAHCV             
Sbjct: 1   IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVSVVV----- 55

Query: 102 MLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTET 161
            L        E V    RI+ HSMF      ND+AL+++   + Y   ++PI LP   E 
Sbjct: 56  YLGSAVQYEGEAVVNSERIISHSMFNPDTYLNDVALIKIP-HVEYTDNIQPIRLPSGEEL 114

Query: 162 PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACK----HYEDRIADVICAGMPQGGR 217
              +    A   G    +  D   ++     ++   +    +    I +    G    G+
Sbjct: 115 NNKFENIWATVSGWGQSN-TDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTSDGK 173

Query: 218 DTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCA-RPNEPGVYTRVSQFVPWLMSNS 274
             C GDSGGP +        +  + GVVS   G      +P  ++RV+ ++ W+  N+
Sbjct: 174 SPCFGDSGGPFVL-----SDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNT 226

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Length = 187

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

 Score = 78.5 bits (192), Expect = 3e-18
 Identities = 30/226 (13%), Positives = 49/226 (21%), Gaps = 45/226 (19%)

Query: 46  VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRR 105
           V+GG     G            F    G      + +TA HC +                
Sbjct: 1   VLGGGAIYGGGSRCSA-----AFNVTKG---GARYFVTAGHCTNISANWSASS------- 45

Query: 106 FSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPY 165
                          V+      +  TND  +++          V               
Sbjct: 46  ------------GGSVVGVREGTSFPTNDYGIVRYTDGSSPAGTVDLYNG---------- 83

Query: 166 STCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYED-RIADVICAGMPQGGRDTCQGDS 224
           ST                      +V               D     M +    +  GDS
Sbjct: 84  STQDISSAANAVVGQAIKKSGSTTKVTSGTVTAVNVTVNYGDGPVYNMVRTTACSAGGDS 143

Query: 225 GGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL 270
           GG                G+ S   GC+      ++  V++ +   
Sbjct: 144 GGAHFA-------GSVALGIHSGSSGCSGTAGSAIHQPVTEALSAY 182

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 65.8 bits (159), Expect = 2e-13
 Identities = 30/232 (12%), Positives = 61/232 (26%), Gaps = 29/232 (12%)

Query: 45  RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLR 104
           ++            ++      G F   GVV+ +  ++T  H VD        +      
Sbjct: 10  QITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHAL------ 63

Query: 105 RFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEP 164
           +   S   Q    +         +     DLA+++ +   +       +    ++   E 
Sbjct: 64  KAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAET 123

Query: 165 YSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDS 224
            +       G   +         + ++  L       D                T  G+S
Sbjct: 124 QTNQNITVTGYPGDKPVATMWESKGKITYLKGEAMQYD--------------LSTTGGNS 169

Query: 225 GGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER 276
           G P+         +  V G+     G        V+        +L  N E 
Sbjct: 170 GSPVFN------EKNEVIGIHWG--GVPNEFNGAVFI-NENVRNFLKQNIED 212

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 24/197 (12%), Positives = 52/197 (26%), Gaps = 18/197 (9%)

Query: 36  AGNPI-LGSGRVVGGKKAELGAWPW--LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFE 92
             N   L         + +   +P+  +  ++  G     GV++ ++ V+T  H      
Sbjct: 19  GVNAFNLPKELFSKVDEKDRQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAKFAN 78

Query: 93  KHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRP 152
               +V          +   +       V   + +      DLAL++L            
Sbjct: 79  GDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEPFGAGVDLALIRLKPDQNGVSL--- 135

Query: 153 ICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGM 212
                ++      S     G        P    +           + +   I     +  
Sbjct: 136 --GDKISPAKIGTSNDLKDGDKLELIGYPFDHKV----------NQMHRSEIELTTLSRG 183

Query: 213 PQGGRDTCQGDSGGPLL 229
            +    T  G+SG  + 
Sbjct: 184 LRYYGFTVPGNSGSGIF 200

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]} Length = 246

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 31/236 (13%), Positives = 72/236 (30%), Gaps = 36/236 (15%)

Query: 56  AWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVR 115
            +  +  ++  G     GV++ ++ ++T  H      K+   +     +       E   
Sbjct: 35  PYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPT 94

Query: 116 PVSRIVMHSMFKRAEMTN-DLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWG 174
           P  +     + +       DLA+++L    +       I   ++ +  +          G
Sbjct: 95  PYGKFEAEEIKESPYGQGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLG 154

Query: 175 AVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPG 234
             + +                    Y    + +      Q    T  G+SG  +      
Sbjct: 155 YPYNYS------------------AYSLYQSQIEMFNDSQYFGYTEVGNSGSGIF----N 192

Query: 235 SQGRWYVAGVVS---------HGEGCARPNEPGVYTRVSQFVPWLMSN-SERAKVE 280
            +G   + G+ S          G    R     +Y+  + F   L ++  +RAK++
Sbjct: 193 LKGE--LIGIHSGKGGQHNLPIGVFFNRKIS-SLYSVDNTFGDTLGNDLKKRAKLD 245

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	100.0
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	100.0
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	100.0
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	100.0
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	100.0
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	100.0
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	100.0
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	100.0
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	100.0
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	100.0
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	100.0
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	100.0
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	100.0
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	100.0
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	100.0
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	100.0
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	100.0
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	100.0
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	100.0
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	100.0
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	100.0
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	100.0
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	100.0
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	100.0
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	100.0
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	100.0
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1elva1	259	Complement C1S protease, catalytic domain {Human (	100.0
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	100.0
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	100.0
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	100.0
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	100.0
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	100.0
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	100.0
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	100.0
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	100.0
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	100.0
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	100.0
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	100.0
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	100.0
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	99.93
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	99.92
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	99.76
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	99.72
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	99.65
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	99.47
d2sgaa_	181	Protease A {Streptomyces griseus, strain k1 [TaxId	99.11
d2qaaa1	185	Protease B {Streptomyces griseus, strain k1 [TaxId	99.02
d2h5ca1	198	alpha-Lytic protease {Lysobacter enzymogenes, 495	98.98
d2z9ia2	221	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.89
d1l1ja_	228	Protease Do (DegP, HtrA), catalytic domain {Thermo	98.83
d1lcya2	205	Mitochondrial serine protease HtrA2, catalytic dom	98.78
d2qf3a1	210	Stress sensor protease DegS, catalytic domain {Esc	98.7
d1ky9a2	249	Protease Do (DegP, HtrA), catalytic domain {Escher	98.62
d1lvmb_	219	TEV protease (nucleat inclusion protein A, NIA) {T	98.44
d2bhga1	199	3C cysteine protease (picornain 3C) {Foot-and-mout	98.04
d1cqqa_	180	3C cysteine protease (picornain 3C) {Human rhinovi	96.41
d2h6ma1	212	3C cysteine protease (picornain 3C) {Human hepatit	89.82

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.2e-48  Score=320.43  Aligned_cols=227  Identities=38%  Similarity=0.854  Sum_probs=192.8

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCC--ceEEEEEeeeecccC-CCCceEEeeeEEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK--HYFEVYAGMLRRFSF-SPTEQVRPVSRIVM  122 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~--~~~~v~~g~~~~~~~-~~~~~~~~v~~~~~  122 (286)
                      |+||++|..++|||+|.|+.++.++|+||||+++||||||||+.....  ....+..+....... ....+.+.+.++++
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   80 (235)
T d1ekbb_           1 IVGGSDSREGAWPWVVALYFDDQQVCGASLVSRDWLVSAAHCVYGRNMEPSKWKAVLGLHMASNLTSPQIETRLIDQIVI   80 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEECSSSEEEECHHHHTTCCSSGGGEEEEESCCBTTCCCCTTCEEEEEEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEECCCEEEEEEEEcCCEEEEChhhccCCCCCccceeeeecccccccccCcceeEeeeeeeee
Confidence            689999999999999999999999999999999999999999976443  355666665543322 34567889999999


Q ss_pred             CCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccc-
Q psy10841        123 HSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH-  199 (286)
Q Consensus       123 hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~-  199 (286)
                      ||+|+.....+|||||||++++.|+..++|||||........+..+.++||+.....+.....++...+.+.+  .|.. 
T Consensus        81 hp~~~~~~~~~diAli~L~~~v~~~~~~~picLp~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  160 (235)
T d1ekbb_          81 NPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQ  160 (235)
T ss_dssp             CTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEBCCHHHHHHH
T ss_pred             cccccccCccchhhhhhhcCceecCCceeeEECCCccccCCcceEEEEecccccccCCcccccceeeEEEEecHHHhccc
Confidence            9999999999999999999999999999999999876666778899999999887776667778888888776  2332 


Q ss_pred             --cccCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        200 --YEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       200 --~~~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                        .....+.++|+.......+.|.||+||||++..   +++|+|+||+|++..|+..+.|++|+||.+|++||+++|+
T Consensus       161 ~~~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~---~~~~~l~Gi~S~g~~~~~~~~p~v~t~v~~y~~WI~~~i~  235 (235)
T d1ekbb_         161 MPEYNITENMVCAGYEAGGVDSCQGDSGGPLMCQE---NNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQSFLH  235 (235)
T ss_dssp             CTTSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEE---TTEEEEEEEEEECSSSSCTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             ccccccCcccEEEEcCCCCcccccCCCCCccEEcc---CCEEEEEEEEEecCCCCCCCCCEEEEEHHHHHHHHHHhhC
Confidence              223567789998766667899999999999977   6799999999999999888899999999999999999874

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-46  Score=315.39  Aligned_cols=228  Identities=35%  Similarity=0.705  Sum_probs=193.7

Q ss_pred             eecCeeCCCCccceEEEEeeC-CeEEeEEEEeeCCEEEeccCCcCCCCC------ceEEEEEeeeecccC-CCCceEEee
Q psy10841         46 VVGGKKAELGAWPWLIALYRD-GFFHCGGVVLDESWVMTAAHCVDGFEK------HYFEVYAGMLRRFSF-SPTEQVRPV  117 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTaAhC~~~~~~------~~~~v~~g~~~~~~~-~~~~~~~~v  117 (286)
                      |+||++|+.+||||+|.|+.. +.++|+||||+++||||||||+.+...      ....+..+..+.... ....+.+.|
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~~C~GtlIs~~~VLTaA~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (241)
T d1eaxa_           1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRL   80 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTTEEEEEEEECSSSEEEECGGGGCCBTTBCTTCGGGEEEEESCCBTTCTTSTTCEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEECCCCEEEEEEEEcCCEEEECeeeeecCCceeeeccceeeEEeeeeecccccCCCcEEEEE
Confidence            689999999999999999755 467999999999999999999975432      345555555443332 245678999


Q ss_pred             eEEEECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--
Q psy10841        118 SRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--  195 (286)
Q Consensus       118 ~~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--  195 (286)
                      .++++||+|+.....+|||||||+.++.|...++||||+........+..+...||+...........++...+.+.+  
T Consensus        81 ~~i~~Hp~y~~~~~~~diAll~L~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~  160 (241)
T d1eaxa_          81 KRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQT  160 (241)
T ss_dssp             EEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEECCHH
T ss_pred             EEEEECCcccccccCCcccccccCCceecCcccceeeccccccccccceeEEEeccCCccccccccccceEEEEEEeCHH
Confidence            999999999999999999999999999999999999999877777777889999999886666667778888888887  


Q ss_pred             ccccccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhh
Q psy10841        196 ACKHYED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN  273 (286)
Q Consensus       196 ~c~~~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~  273 (286)
                      .|+..+.  ....++|++........|.||+||||++...  +++|+|+||+|++..|+..+.|.+|+||++|++||+++
T Consensus       161 ~C~~~~~~~~~~~~~c~~~~~~~~~~c~gd~G~pl~~~~~--~g~~~L~Gi~s~~~~c~~~~~p~vft~V~~y~~WI~~~  238 (241)
T d1eaxa_         161 TCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEA--DGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN  238 (241)
T ss_dssp             HHHHHSTTTCCTTEEEEECTTCSSBCCTTCTTCEEEEECT--TSCEEEEEEEEECSSSSCTTCCEEEEESGGGHHHHHHH
T ss_pred             HHHHHhCccccCccceeccCCCCcccccCcccceeEEEcC--CCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHH
Confidence            5877654  5677999987777789999999999998664  68999999999999998878999999999999999998


Q ss_pred             hc
Q psy10841        274 SE  275 (286)
Q Consensus       274 ~~  275 (286)
                      ++
T Consensus       239 ~g  240 (241)
T d1eaxa_         239 TG  240 (241)
T ss_dssp             HC
T ss_pred             hC
Confidence            75

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-47  Score=315.41  Aligned_cols=228  Identities=35%  Similarity=0.794  Sum_probs=195.9

Q ss_pred             eecCeeCCCCccceEEEEeeCC---eEEeEEEEeeCCEEEeccCCcCCCCC-ceEEEEEeeeecccCCCCceEEeeeEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRDG---FFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGMLRRFSFSPTEQVRPVSRIV  121 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~---~~~C~GtLIs~~~VLTaAhC~~~~~~-~~~~v~~g~~~~~~~~~~~~~~~v~~~~  121 (286)
                      |+||+++..++|||+|.|+..+   .++|+||||+++||||||||+..... ..+.+..+...........+.+.|.+++
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   80 (237)
T d1xx9a_           1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEII   80 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEEESSSEEEEEEEEEEETTEEEECGGGGTTCSCGGGEEEEESCSBGGGCCTTCCCEEEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEECCCCccEEEEEEEEeCCEEEeCeEeeecccCccceeeecccccccccccceEEEEeeEEE
Confidence            7899999999999999997432   46899999999999999999976544 4566666666666656677889999999


Q ss_pred             ECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccc
Q psy10841        122 MHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       122 ~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~  199 (286)
                      .||+|+.....+|||||+|++++.+.+.++|||++...........+.+.||+...........++...+.+.+  +|+.
T Consensus        81 ~h~~~~~~~~~~diAll~L~~~v~~~~~~~pi~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~C~~  160 (237)
T d1xx9a_          81 IHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK  160 (237)
T ss_dssp             ECTTCSCTTTSCCCEEEEESSCCCCBTTBCCCBCCCTTCTTCCCSCEEEEESCCSSTTCCCCSBCEEEECCEECHHHHHH
T ss_pred             EecccccccccceeEEEEeccccccccccceEEecccccccccccccEEEEeecccccccCCCccEEEEEEEeCHHHHhh
Confidence            99999999999999999999999999999999998877666677789999999877666677788888888877  5765


Q ss_pred             cc---cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        200 YE---DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       200 ~~---~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      .+   .....++|++........|.||+||||++..   +++|+|+||+|++..|+..+.|++|+||++|++||+++++.
T Consensus       161 ~~~~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~---~~~~~l~Gi~s~g~~~~~~~~p~vft~v~~~~~WI~~~~~~  237 (237)
T d1xx9a_         161 RYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKH---NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQA  237 (237)
T ss_dssp             HTTTSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEE---TTEEEEEEEEEEESSSSCTTCCEEEECGGGGHHHHHHHHCC
T ss_pred             hhcCCCCCCceEEEecCCCCcccccCCccceeEEec---CCEEEEEEEEEeCCCCCCCCCCEEEEEhHHhHhHHHHHHCC
Confidence            43   3467789998767778899999999999876   78999999999999998888899999999999999999863

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-47  Score=319.26  Aligned_cols=233  Identities=36%  Similarity=0.737  Sum_probs=194.7

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++++.+||||+|.|..++.++|+||||+++||||||||+.+.......+..+...........+...+.+++.||.
T Consensus         1 i~gG~~~~~~e~Pw~v~I~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~h~~   80 (255)
T d1z8ga1           1 IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGG   80 (255)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEESSSSEEEECGGGCCGGGCCGGGEEEEESCSBTTCTTSEEECEEEEEEETT
T ss_pred             CCCCEECCCCCcCcEEEEEECCcEEEEEEEEeCCEEEECceecCCCCCccceeeEeeeeecccCCccEEEEEEEEEEEee
Confidence            68999999999999999999989999999999999999999997765533334434333334445667888999999988


Q ss_pred             ------CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cc
Q psy10841        126 ------FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC  197 (286)
Q Consensus       126 ------y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c  197 (286)
                            |+.....+|||||||++++.|++.++|+||+........+..+.++||+.....+.....++...+.+++  .|
T Consensus        81 ~~~~~~~~~~~~~~DiAll~L~~~v~~~~~~~p~~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~C  160 (255)
T d1z8ga1          81 YLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVC  160 (255)
T ss_dssp             CGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEECHHHH
T ss_pred             eccccccccCCccccEEEEecCCccccCcccccceecccCcccCCCcEEEeeccccccCCCcccceeEEEEEEEeCHHHh
Confidence                  5566678999999999999999999999998876666778899999999887777777888899888888  57


Q ss_pred             ccccc----CCCCEEEEeeCCCCCCCCCCCCCCeeeeecC-CCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHh
Q psy10841        198 KHYED----RIADVICAGMPQGGRDTCQGDSGGPLLCPVP-GSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS  272 (286)
Q Consensus       198 ~~~~~----~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~-~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~  272 (286)
                      +..+.    ..+.++|+.........|.||+||||++... +..++|+|+||+|++.+|+..+.|++|+||++|++||++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~~~~~~~~~~~l~Gi~S~g~~c~~~~~p~vft~V~~y~~WI~~  240 (255)
T d1z8ga1         161 NGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQ  240 (255)
T ss_dssp             TSTTTTTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTCCEEEEEGGGGHHHHHH
T ss_pred             hhhhccCccccCcceEEecCCCCcccccCccccceEEecCCCCCCcEEEEEEEEECCCCCCCCCCEEEEEHHHhHHHHHH
Confidence            65432    4566777776667778999999999999874 456789999999999999988889999999999999999


Q ss_pred             hhcccc
Q psy10841        273 NSERAK  278 (286)
Q Consensus       273 ~~~~~~  278 (286)
                      ++++..
T Consensus       241 ~i~~~~  246 (255)
T d1z8ga1         241 AIKTHS  246 (255)
T ss_dssp             HHHHTT
T ss_pred             HHHHcC
Confidence            997764

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-46  Score=312.19  Aligned_cols=220  Identities=32%  Similarity=0.632  Sum_probs=187.2

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++|+.+||||+|+|+.++.++|+||||+++||||||||+.+...   .+.+...+........+...+..+++||+
T Consensus         1 ivgG~~a~~~e~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~hp~   77 (232)
T d1orfa_           1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKRS---QVILGAHSITREEPTKQIMLVKKEFPYPC   77 (232)
T ss_dssp             CBSCEECCTTSSTTEEEEECSSSCEEEEEEEETTEEEECTTCCCCTTC---EEEESCSBSSSCCTTCEEECEEEEEECTT
T ss_pred             CCCCEECCCCCCCcEEEEEECCCEEEEEEEecCCEEEEChhhcCCCCc---ceeeeeeeccccccccccceEEEEEeccc
Confidence            789999999999999999988889999999999999999999976543   23344444444455667788899999999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccccc-
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYED-  202 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~~-  202 (286)
                      |+.....+|||||+|++++.++..++|+||+........+..+.++|||.+...+.....++.+.+.+.+  +|+..+. 
T Consensus        78 y~~~~~~~diAll~l~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~  157 (232)
T d1orfa_          78 YDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHY  157 (232)
T ss_dssp             CCTTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEEECHHHHTSTTTT
T ss_pred             ccccccCcceeEeeeccceeeeeeEeeeeecccccccccCceeeeccccccCCcccCChhheEEEeecCCHHHHhhhhhc
Confidence            9999999999999999999999999999999877777778899999999887777777889999998888  5865432 


Q ss_pred             -----CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC--CCCCCCCCeeEEeCC-CcHHHHHhhh
Q psy10841        203 -----RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVS-QFVPWLMSNS  274 (286)
Q Consensus       203 -----~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~--~c~~~~~p~v~t~v~-~~~~WI~~~~  274 (286)
                           ..+.++|+.........|.||+||||++..       +|+||+|++.  .|+..+.|++||||+ +|++||+++|
T Consensus       158 ~~~~~~~~~~~C~~~~~~~~~~c~gdsG~Pl~~~~-------~l~GI~S~g~~~~c~~~~~p~vyt~Vs~~y~~WI~~~i  230 (232)
T d1orfa_         158 NFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEG-------VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTI  230 (232)
T ss_dssp             TTTTCCCTTEEEEECSSCCCBCCTTCTTCEEEETT-------EEEEEEEECCTTCTTCTTSCEEEEECCHHHHHHHHHHH
T ss_pred             ccCccccCceEEeccCCCCcccccccCCCeEEEcC-------EEEEEEEEECCCCCCCCCCCcEEEEeeHHHHHHHHHHh
Confidence                 457789998777778899999999999743       6999999985  577778899999997 7999999998


Q ss_pred             c
Q psy10841        275 E  275 (286)
Q Consensus       275 ~  275 (286)
                      +
T Consensus       231 ~  231 (232)
T d1orfa_         231 K  231 (232)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-46  Score=309.04  Aligned_cols=216  Identities=31%  Similarity=0.666  Sum_probs=184.7

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++|+.++|||+|+|+.++.++|+||||+++||||||||+...    ..+++|...........+.+.+.++++||+
T Consensus         1 i~~G~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~----~~v~~g~~~~~~~~~~~~~~~~~~~~~~p~   76 (221)
T d1lo6a_           1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKKPN----LQVFLGKHNLRQRESSQEQSSVVRAVIHPD   76 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCCTT----CEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCCCCEEEEEECCcEEEEEEEEeCCEEEECeeccccc----cceeeceeeecccCccceeeeccccccCCC
Confidence            6899999999999999999999999999999999999999999653    368888887776666778889999999999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccccc-
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYED-  202 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~~-  202 (286)
                      |+.....+|||||+|+.++.+++.++|+||+..  .......+.++|||..... .....++...+.+++  +|+..+. 
T Consensus        77 y~~~~~~~diAll~l~~~~~~~~~v~pi~l~~~--~~~~~~~~~~~Gwg~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~  153 (221)
T d1lo6a_          77 YDAASHDQDIMLLRLARPAKLSELIQPLPLERD--CSANTTSCHILGWGKTADG-DFPDTIQCAYIHLVSREECEHAYPG  153 (221)
T ss_dssp             CCTTTCTTCCEEEEESSCCCCBTTBCCCCBCCC--TTCCCCEEEEEESSCCTTS-SCCSBCEEEEEEEECHHHHHHHSTT
T ss_pred             cccccccceeEEeecccccceeeeEEecccccc--CCcccceEEEEecccccCC-CCCccceEEEEEEecHHHHHHHcCC
Confidence            999999999999999999999999999999873  3456689999999977543 445678888888887  5877654 


Q ss_pred             -CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        203 -RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       203 -~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                       ..+.++|..........|.||+||||++..       +|+||+|+|. .|+..+.|.+||||++|++||+++|+
T Consensus       154 ~~~~~~~~~~~~~~~~~~c~gd~G~Pl~~~~-------~l~Gi~S~g~~~c~~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1lo6a_         154 QITQNMLCAGDEKYGKDSCQGDSGGPLVCGD-------HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ  221 (221)
T ss_dssp             TCCTTEEEEECTTTCCBCCTTTTTCEEEETT-------EEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             CccCCceeeeccccCCCCccCCCCCcEEECC-------EEEEEEEEccCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence             335566666556778899999999999744       6999999987 68777889999999999999999985

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-46  Score=311.71  Aligned_cols=227  Identities=30%  Similarity=0.597  Sum_probs=189.9

Q ss_pred             ceecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCC-ceEEEEEeeeecccCCCCceEEeeeEEEEC
Q psy10841         45 RVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGMLRRFSFSPTEQVRPVSRIVMH  123 (286)
Q Consensus        45 ~i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~-~~~~v~~g~~~~~~~~~~~~~~~v~~~~~h  123 (286)
                      ||+||++|+.+||||+|+|+.++.++|+||||+++||||||||+.+... ....+..+.............+.+..++.|
T Consensus         2 ri~gG~~a~~~e~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~h   81 (240)
T d1mzaa_           2 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIPF   81 (240)
T ss_dssp             CCCCCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGSCTTCSCSCEEEEESCSBSSSCCTTCEEEEEEEEEEC
T ss_pred             EEECCEECCCCCCCcEEEEEECCeEEEEEEEEeCCEEEECeEcccccCCcceeEEEEeecccCcCCccceeEeeeeeeee
Confidence            8999999999999999999999999999999999999999999976554 456677776666555556778889999999


Q ss_pred             CCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCC-CCCCCccceeEeeeecc--ccccc
Q psy10841        124 SMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFE-HGPDPDHMREVQVPILP--ACKHY  200 (286)
Q Consensus       124 p~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~-~~~~~~~l~~~~~~~~~--~c~~~  200 (286)
                      |.|+.....+|||||+|+.++.|++.++||||+..... .....+.+.|||.+.. .+.....++...+.+..  .|+..
T Consensus        82 ~~~~~~~~~~diAll~l~~~~~~~~~~~picL~~~~~~-~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~  160 (240)
T d1mzaa_          82 SRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSL-RSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQ  160 (240)
T ss_dssp             CCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCCC-CTTCEEEEEECCCSSTTCSSCCSBCEEEEEEECCHHHHTST
T ss_pred             ccccccccCcceEEEeecceeeeeeccccccccccccc-cceeeEEEEEeccccCCcCcCCcccEEEEEEEecHHHhhhh
Confidence            99999999999999999999999999999999875443 3446788899987653 34455678888888887  57654


Q ss_pred             cc------CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCC-CcHHHHHhh
Q psy10841        201 ED------RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS-QFVPWLMSN  273 (286)
Q Consensus       201 ~~------~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~-~~~~WI~~~  273 (286)
                      ..      ....++|++........|.|||||||++..       +|+||+|++..|+..+.|++|+||+ +|++||+++
T Consensus       161 ~~~~~~~~~~~~~~c~~~~~~~~~~C~gDsGgPl~~~~-------~l~Gi~S~g~~c~~~~~p~vftrvs~~y~~WI~~~  233 (240)
T d1mzaa_         161 SYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICKG-------VFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSN  233 (240)
T ss_dssp             TTTTTTTCCCTTEEEEECTTSCCCCCTTCTTCEEEETT-------EEEEEECSSCCSSCTTCCEEEEECCHHHHHHHHHH
T ss_pred             hhccCCcccccceEEeccCCCCccCccCCCCCeEEECC-------EEEEEEEeCCCCCCCCCCeEEEEEHHHHHHHHHHH
Confidence            32      346788998767778899999999999743       6999999999998878899999998 689999999


Q ss_pred             hccccc
Q psy10841        274 SERAKV  279 (286)
Q Consensus       274 ~~~~~~  279 (286)
                      |+...+
T Consensus       234 i~~~~~  239 (240)
T d1mzaa_         234 LVPPHT  239 (240)
T ss_dssp             TCCSCC
T ss_pred             ccCCCC
Confidence            987653

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=100.00  E-value=5.4e-46  Score=309.97  Aligned_cols=224  Identities=40%  Similarity=0.781  Sum_probs=188.5

Q ss_pred             eecCeeCCCCccceEEEEeeC----CeEEeEEEEeeCCEEEeccCCcCCCCC---ceEEEEEeeeecccCCCCceEEeee
Q psy10841         46 VVGGKKAELGAWPWLIALYRD----GFFHCGGVVLDESWVMTAAHCVDGFEK---HYFEVYAGMLRRFSFSPTEQVRPVS  118 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~----~~~~C~GtLIs~~~VLTaAhC~~~~~~---~~~~v~~g~~~~~~~~~~~~~~~v~  118 (286)
                      |+||+++..++|||+|.|...    +.++|+||||+++||||||||+.....   ..+.+..+...........+...|.
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (237)
T d2f91a1           1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQIITVS   80 (237)
T ss_dssp             CBSCEECCTTTSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGTTTSCTTSCCSEEEEESCSBTTSCCSCCEEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEEecCCCCcEEEEEEEEeCCEEEECcccccccCCccccceeEEeeecccccccCcceeeeEE
Confidence            789999999999999999642    246899999999999999999976543   4455555555554545567788999


Q ss_pred             EEEECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--c
Q psy10841        119 RIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--A  196 (286)
Q Consensus       119 ~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~  196 (286)
                      ++++||+|+.....+|||||+|++++.|+..++|||++...  ...+..+.++|||.+...+.....+++..+.+++  .
T Consensus        81 ~i~~h~~y~~~~~~~diAll~l~~~v~~~~~~~~i~~~~~~--~~~~~~~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~  158 (237)
T d2f91a1          81 KIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQG--HTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDED  158 (237)
T ss_dssp             EEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTT--CCCCSEEEEEESCCSSTTCCCCSBCEEEEEEEECHHH
T ss_pred             EEEEccccCCCccccceeeeccccccccCCceeeeeccccC--cccccceeeccccccCCCCcCCchheEEEEEEeCHHH
Confidence            99999999999999999999999999999999999998744  3445789999999987776677788898888887  5


Q ss_pred             cccccc---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhh
Q psy10841        197 CKHYED---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN  273 (286)
Q Consensus       197 c~~~~~---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~  273 (286)
                      |+..+.   ....++|..........|.+|+||||++..   +++|+|+||+|++..|+..+.|.+|+||++|++||+++
T Consensus       159 C~~~~~~~~~~~~~~c~~~~~~~~~~~~gdsG~Pl~~~~---~~~~~L~Gi~S~g~~c~~~~~p~v~t~v~~y~~WI~~n  235 (237)
T d2f91a1         159 CRADYGADEILDSMICAGVPEGGKDSCQGDSGGPLAASD---TGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKAN  235 (237)
T ss_dssp             HHHHHCTTTSCTTEEEECCTTCCCBCCTTCTTCEEEECT---TSSCEEEEEEEEESSSSCTTCCEEEEEGGGSHHHHHHH
T ss_pred             HhhhccCCcccCceeEeecCCCccccccCCCCCeEEEec---CCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHh
Confidence            766433   556788988777778899999999999865   78999999999999998888899999999999999986


Q ss_pred             h
Q psy10841        274 S  274 (286)
Q Consensus       274 ~  274 (286)
                      +
T Consensus       236 ~  236 (237)
T d2f91a1         236 A  236 (237)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.9e-46  Score=306.41  Aligned_cols=217  Identities=33%  Similarity=0.754  Sum_probs=179.6

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|.|+ .+.++|+||||+++||||||||+......    ..................+.++++||+
T Consensus         1 i~gG~~~~~~~~Pw~v~l~-~~~~~C~GtLIs~~~VLTaAhCv~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~hp~   75 (223)
T d1j16a_           1 IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQV----RLGEHNINVLEGNEQFVNAAKIIKHPN   75 (223)
T ss_dssp             CBSCEECCTTSSTTEEEEE-SSSEEEEEEEEETTEEEECGGGCCSSCEE----EESCSBTTSCCSCCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCCCcEEEEe-CCCEEEEEEEEcCCEEEeCHHHCCCcCCc----eeeeeeeccccccceeeeeeeEEecCC
Confidence            6899999999999999995 56689999999999999999999765421    111222223334567788899999999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCC-CCccceeEeeeecc--ccccccc
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGP-DPDHMREVQVPILP--ACKHYED  202 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~-~~~~l~~~~~~~~~--~c~~~~~  202 (286)
                      |+.....+|||||||++++.|+++++|||||..  ....+..+++.|||.+...+. ....++...+.+.+  .|+..+.
T Consensus        76 y~~~~~~~diAll~L~~~v~~~~~~~picL~~~--~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~  153 (223)
T d1j16a_          76 FDRETYNNDIMLIKLSSPVKLNARVATVALPSS--CAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASSS  153 (223)
T ss_dssp             CBTTTTBTCCEEEEESSCCCCBTTBCCCBCCSS--CCCTTCEEEEEESSCCCSSSCCCCSBCEEEEEEEECHHHHHSSSS
T ss_pred             CCccccceeEEEEEecCccccceeEEEEecCCc--CCCCCCEEEEEeeeeeeCCCccCcceeeEEEEEEEEhhHhhcccc
Confidence            999999999999999999999999999999973  345678999999998765543 45678888888877  5876554


Q ss_pred             --CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        203 --RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       203 --~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                        ..+.++|+.........|.||+|+||++..       +|+||+|++..|+..+.|.+|+||++|++||+++|++
T Consensus       154 ~~~~~~~~C~~~~~~~~~~c~gd~g~pl~~~~-------~L~Gi~s~~~~~~~~~~p~vft~v~~~~~WI~~~i~~  222 (223)
T d1j16a_         154 FIITDNMVCVGFLEGGKDACQGDSGGPVVCNG-------ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAA  222 (223)
T ss_dssp             CCCCTTEEEESCTTCSCBCCTTCTTCEEEETT-------EEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             ceeCCCceEEecCCCCCcccCCccCCcEEEee-------EEEEEEEEccCCCCCCCCEEEEEhHHhHHHHHHHHhc
Confidence              467799998767777899999999999743       6999999999998878899999999999999999975

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-46  Score=309.48  Aligned_cols=226  Identities=31%  Similarity=0.668  Sum_probs=185.6

Q ss_pred             eecCeeCCCCccceEEEEeeC-CeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRD-GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |+||+.|..+||||+|.|+.+ ..++|+||||+++||||||||+.+.  ....|.+|..+........+...|.++++||
T Consensus         1 i~~G~~~~~~e~Pw~v~i~~~~~~~~C~GtLIs~~~VLTaAhCv~~~--~~~~v~~g~~~~~~~~~~~~~~~v~~i~~~~   78 (240)
T d1autc_           1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDES--KKLLVRLGEYDLRRWEKWELDLDIKEVFVHP   78 (240)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTSCEEEEEEEEETTEEEECGGGSSSC--SCCEEEESCCBTTCCCTTCEEEEEEEEEECT
T ss_pred             CCCCEECCCCCCCCEEEEEECCCCEEEEEEEEeCCEEEECceeccCc--ccceeeccccccccccccceeeeeeccccce
Confidence            689999999999999999754 4678999999999999999999754  3567889988877767778899999999999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCC----CCCCCCCceEEEEecccCCCCCC-----CccceeEeeeecc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVT----ETPEPYSTCTAVGWGAVFEHGPD-----PDHMREVQVPILP  195 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~----~~~~~~~~~~~~Gwg~~~~~~~~-----~~~l~~~~~~~~~  195 (286)
                      .|......+|||||||++|+.|+..++|+|||...    .....+..+.+.|||........     ...+....+++.+
T Consensus        79 ~~~~~~~~~DiAli~L~~~v~~~~~v~picL~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (240)
T d1autc_          79 NYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVP  158 (240)
T ss_dssp             TCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSSBCEEEEEEEEC
T ss_pred             eeeccccccceeEEEeCCcccCCcccccceeccCcccccccccCCCeEEEEeeccccCCCcccccccceeeecceeeEEe
Confidence            99999999999999999999999999999998643    23456678999999976543322     2345555666655


Q ss_pred             --ccccccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHH
Q psy10841        196 --ACKHYED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLM  271 (286)
Q Consensus       196 --~c~~~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~  271 (286)
                        .|.....  .....+|..........|.||+|+||++..   +++|+|+||+|++..|+..+.|++||||++|++||+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~G~pl~~~~---~~~~~l~Gi~s~g~~c~~~~~p~vftrv~~y~~WI~  235 (240)
T d1autc_         159 HNECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASF---HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIH  235 (240)
T ss_dssp             HHHHHHHCSSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEE---TTEEEEEEEEEECSSSSCTTCCEEEECGGGTHHHHH
T ss_pred             ehhhhhhcccccccceeeeccccccCCCcCCccCceeEEcC---CCCEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHH
Confidence              3433322  345566666666778899999999999877   689999999999999987788999999999999999


Q ss_pred             hhhcc
Q psy10841        272 SNSER  276 (286)
Q Consensus       272 ~~~~~  276 (286)
                      +++++
T Consensus       236 ~~i~~  240 (240)
T d1autc_         236 GHIRD  240 (240)
T ss_dssp             HHHC-
T ss_pred             HHhCC
Confidence            99875

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.1e-46  Score=311.49  Aligned_cols=228  Identities=31%  Similarity=0.627  Sum_probs=185.4

Q ss_pred             CCceecCeeCCCCccceEEEEee--CC--eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeee
Q psy10841         43 SGRVVGGKKAELGAWPWLIALYR--DG--FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVS  118 (286)
Q Consensus        43 ~~~i~~g~~a~~~~~Pw~v~i~~--~~--~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~  118 (286)
                      +.||+||++|+.++|||+|.|..  ++  .++|+||||+++||||||||+............+. .........+...|.
T Consensus        11 ~~ri~gG~~a~~~~~Pw~v~i~~~~~~~~~~~C~G~LIs~~~VLTaAhC~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~   89 (251)
T d1pytd_          11 SARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISNTLTYRVALGKNN-LEVEDEAGSLYVGVD   89 (251)
T ss_dssp             SSSCCSSCCCCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCTTCCEEEEESCSB-TTCSCCSSCEEEEEE
T ss_pred             CCeEECCEECCCCCCCcEEEEEEEeCCCceeEEeEEEEcCCeEEEeeecccccccceeeeeeee-eecccCCCceEEeEE
Confidence            56999999999999999999953  22  46899999999999999999987554332222221 122223456788999


Q ss_pred             EEEECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--c
Q psy10841        119 RIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--A  196 (286)
Q Consensus       119 ~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~  196 (286)
                      ++++||.|+.....+||||++|++|+.|+..++||||+........+..+.+.||+.+...+.....++...+.+++  .
T Consensus        90 ~i~~h~~y~~~~~~~diali~l~~pi~~~~~~~pi~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (251)
T d1pytd_          90 TIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYAT  169 (251)
T ss_dssp             EEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEECBCCCSSCCSCCCSBCBCCEEECBCHHH
T ss_pred             EEEEeeeecccccCCceeeeecCCCcccCceeEEEEeeccccCCCCceeEEEecCccccCCCcccceeceeeccccCHHH
Confidence            99999999999999999999999999999999999999877777778889999999887776666667777777666  5


Q ss_pred             ccccc----cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC--CCCCCCCCeeEEeCCCcHHHH
Q psy10841        197 CKHYE----DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWL  270 (286)
Q Consensus       197 c~~~~----~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~--~c~~~~~p~v~t~v~~~~~WI  270 (286)
                      |...+    .....++|+.. ....+.|.||+||||++..   +++|+|+||+|++.  .|+..+.|.+|+||++|++||
T Consensus       170 C~~~~~~~~~~~~~~~c~~~-~~~~~~c~gd~G~Pl~~~~---~~~~~L~Gi~S~~~~~~c~~~~~p~vyt~v~~y~~WI  245 (251)
T d1pytd_         170 CSQRDWWGTTVKETMVCAGG-DGVISACNGDSGGPLNCQA---DGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWI  245 (251)
T ss_dssp             HTSTTTTTTTCCTTEEEECC-SCSSCCCCSCTTCEEEEES---SSSEEEEEEEEECCSSCTTBTTBCEEEEEGGGGHHHH
T ss_pred             HhhhhcccccccCceEEecc-CCCCccccCCCCCceEEee---CCEEEEEEEEEECCCCCCCCCCCCeEEEEHHHhHHHH
Confidence            76533    24566899875 4557889999999999876   78999999999986  577678899999999999999


Q ss_pred             Hhhhc
Q psy10841        271 MSNSE  275 (286)
Q Consensus       271 ~~~~~  275 (286)
                      +++|+
T Consensus       246 ~~~i~  250 (251)
T d1pytd_         246 NQKLQ  250 (251)
T ss_dssp             HHHTT
T ss_pred             HHhcc
Confidence            99986

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-45  Score=304.79  Aligned_cols=222  Identities=33%  Similarity=0.652  Sum_probs=189.8

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++|..+||||+|.|+.++.++|+||||+++||||||||+.+.....+.+..+..+........+...|.+++.||.
T Consensus         1 I~gG~~~~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~i~~~~~   80 (228)
T d1bioa_           1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPD   80 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGGGGCSSSCEEEEESCSBSSSCCTTCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCCCcEEEEEECCcEEEEEEEEeCCEEEECceeeeccccceeeeeccccccccCCcceeeccceeeeeeec
Confidence            78999999999999999999999999999999999999999998877777788777776666666778889999999999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccccc-
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYED-  202 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~~-  202 (286)
                      |+.....+|||||+|++++.+++.+.|+||+........+..+.++|||.+...+.....++...+.+.+  .|..... 
T Consensus        81 y~~~~~~~diAll~l~~~~~~~~~v~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  160 (228)
T d1bioa_          81 SQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHH  160 (228)
T ss_dssp             CCTTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCCCCCTTCEEEEEESSCCSTTCCCCSBCEEEEEEEECHHHHHSTTTT
T ss_pred             ccCCCcccceehhhccccceeeeEEeeecccccccccccCceEEEecceeecCCCCCCCcceEEEEEEeCHHHHhhhhcc
Confidence            9999999999999999999999999999999877767778889999999887777777888999998887  3444322 


Q ss_pred             --CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        203 --RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       203 --~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                        .....+|... ......|.||+|+||++.       ++|+||+|++. .|+..+.|++||||++|++||+++|.
T Consensus       161 ~~~~~~~~~~~~-~~~~~~~~gdsG~Pl~~~-------~~LvGi~S~g~~~c~~~~~p~v~t~v~~~~~WI~~~i~  228 (228)
T d1bioa_         161 DGAITERLMCAE-SNRRDSCKGDSGGPLVCG-------GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  228 (228)
T ss_dssp             TTCCCTTEEEEC-CSSCBCCTTTTTCEEEET-------TEEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHHC
T ss_pred             cccccccceeec-ccCCCcccCCcCccEEEc-------CEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence              2333455544 556789999999999973       37999999986 58777889999999999999999873

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=100.00  E-value=1.5e-45  Score=304.43  Aligned_cols=217  Identities=35%  Similarity=0.733  Sum_probs=179.9

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++++.++|||+|+|. ++.++|+||||+++||||||||+.+...  ..+  ................+.+++.||.
T Consensus         1 i~gG~~~~~~~~Pw~v~l~-~~~~~C~GtLIs~~~VLTAAhCv~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   75 (222)
T d1hj8a_           1 IVGGYECKAYSQPHQVSLN-SGYHFCGGSLVNENWVVSAAHCYKSRVE--VRL--GEHNIKVTEGSEQFISSSRVIRHPN   75 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEE-SSSEEEEEEEEETTEEEECGGGCCSSCE--EEE--SCSBTTSCCSCCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCCCeEEEEE-CCCEEEEEEEeeCCEEEeCceecccccC--cce--eeccccccCCccccccceEEEeccc
Confidence            7899999999999999995 5567899999999999999999976442  222  2222222233455666778889999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccccc-
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYED-  202 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~~-  202 (286)
                      |......+|||||||++|+.|++.++|||||..  ....+..+.+.||+.+.........++..++.+++  +|+..+. 
T Consensus        76 ~~~~~~~~diALl~l~~~v~~~~~~~picl~~~--~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~  153 (222)
T d1hj8a_          76 YSSYNIDNDIMLIKLSKPATLNTYVQPVALPTS--CAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPG  153 (222)
T ss_dssp             CBTTTTBSCCEEEEESSCCCCSSSCCCCBCCSS--CCCTTCEEEEEESSCCCCSSCCTTBCEEEEEEBCCHHHHHHHSTT
T ss_pred             ccccccCCcEEEEecccceeeeceeEEEECCCc--CCCCCceEEEEeccccccccccccccEEEEEEEeCHHHHhhhccc
Confidence            999988999999999999999999999999873  44567889999999887777777888999998887  5876543 


Q ss_pred             -CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        203 -RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       203 -~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                       ..+..+|++........|.||+||||++..       +|+||+|++..|+..+.|.+|+||+.|++||+++|++
T Consensus       154 ~~~~~~~C~~~~~~~~~~c~gdsGgPl~~~~-------~l~Gi~S~g~~~~~~~~p~v~t~v~~y~~WI~~~i~~  221 (222)
T d1hj8a_         154 MITNAMFCAGYLEGGKDSCQGDSGGPVVCNG-------ELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMAS  221 (222)
T ss_dssp             CCCTTEEEESCTTSSCBCCTTCTTCEEEETT-------EEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHHC
T ss_pred             ccccceEEEccCCCCcccccCCcccEEEECC-------EEEEEEEEecCCCCCCCCEEEEEHHHHHHHHHHHHHh
Confidence             567799998766677899999999999743       6999999999998888899999999999999999975

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.3e-46  Score=306.57  Aligned_cols=218  Identities=32%  Similarity=0.623  Sum_probs=187.3

Q ss_pred             eecCeeCCCCccceEEEEee----CCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYR----DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIV  121 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~----~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~  121 (286)
                      |+||++|..++|||+|+|..    .+.++|+||||+++||||||||+..    ...|.+|..+........+...|.+++
T Consensus         1 I~gG~~a~~ge~P~~v~i~~~~~~~~~~~C~GtLI~~~~VLTaAhC~~~----~~~v~~G~~~~~~~~~~~~~~~v~~i~   76 (227)
T d1fi8a_           1 IIGGHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAHCSGS----KIQVTLGAHNIKEQEKMQQIIPVVKII   76 (227)
T ss_dssp             CBSCEECCTTSSTTEEEEEEECTTC-CCEEEEEEEETTEEEECGGGCCS----EEEEEESCSBTTSCCTTCEEEEEEEEE
T ss_pred             CCCCEECCCCCCCCEEEEEEEeCCCCceEEEEEEEeCCEEEEecccccc----cceeeeeecccccCCCCceEEEEEEEE
Confidence            68999999999999999963    2246899999999999999999854    457899988877767777889999999


Q ss_pred             ECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccc
Q psy10841        122 MHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       122 ~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~  199 (286)
                      +||.|+.....+|||||+|++++.|++.++||||+........+..+.+.|||...........++...+.+++  .|..
T Consensus        77 ~~~~~~~~~~~~diall~l~~~i~~~~~v~picl~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~c~~  156 (227)
T d1fi8a_          77 PHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCES  156 (227)
T ss_dssp             ECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCHHHHHH
T ss_pred             ecccccCccccchhhhhhccCceeeeeeEEEEEecccCcccCCCCEEEEEeeccccCCCCCCceeeEEEEEEEEchhhhh
Confidence            99999999999999999999999999999999999877777778899999999887777667788888988888  4654


Q ss_pred             ccc---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        200 YED---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       200 ~~~---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      .+.   .....+|+.........|.||+||||++.       ++|+||+|++..|+  +.|.+||||++|++||+++|++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~-------~~l~Gi~S~g~~~~--~~p~vyt~v~~y~~WI~~~i~~  227 (227)
T d1fi8a_         157 YLKNYFDKANEICAGDPKIKRASFRGDSGGPLVCK-------KVAAGIVSYGQNDG--STPRAFTKVSTFLSWIKKTMKK  227 (227)
T ss_dssp             HTTTTCCTTTEEEESCTTSCCBCCTTCTTSEEEET-------TEEEEEEEEEETTC--CSCEEEEEGGGGHHHHHHHHCC
T ss_pred             hhhcccccceeeeeeeccccCCCcCCCcCCEEEEC-------CEEEEEEEEcCCCC--CCCeEEEEHHHHHHHHHHHHcC
Confidence            332   44567788766677889999999999973       37999999998886  4699999999999999999875

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-45  Score=302.71  Aligned_cols=218  Identities=28%  Similarity=0.468  Sum_probs=186.0

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++|..++|||+|.|+.++.++|+||||+++||||||||+.+.......+.++..+............+..++.|+.
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (225)
T d1a7sa_           1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENG   80 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGC----CCSEEEEESCSSTTSCCTTTCEEEEEEEEECSS
T ss_pred             CCCCEECCCCCCCcEEEEEECCcEEEEEEEEcCCEEEECeeeeeeccccceeeEEeeeecccccccccceeeeeeeeeee
Confidence            78999999999999999999999999999999999999999998887778888888777766666667778888999999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccccccC
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYEDR  203 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~~~  203 (286)
                      |+.....+|||||||++++.+.+.++|+||+........+..+.+.|||...........++...+.+++  .|..    
T Consensus        81 ~~~~~~~~DIAll~L~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~~----  156 (225)
T d1a7sa_          81 YDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP----  156 (225)
T ss_dssp             CBTTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSTTCCCCSSCEEEEEEECCGGGSCT----
T ss_pred             ccccccccccchhhcCCcccccccceeEEeeccccccCCCceeEeccccccccccccccceeEEEEEEeehhhccc----
Confidence            9999999999999999999999999999998877777778899999999887777777788888888877  4643    


Q ss_pred             CCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        204 IADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       204 ~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                        ...|..........|.||+||||++.       ++|+||.|++..|+. ..|.+||||++|++||+++|++.
T Consensus       157 --~~~~~~~~~~~~~~c~gdsG~Pl~~~-------~~l~Gi~S~~~~~c~-~~p~v~t~v~~y~~WI~~~i~~~  220 (225)
T d1a7sa_         157 --NNVCTGVLTRRGGICNGDGGTPLVCE-------GLAHGVASFSLGPCG-RGPDFFTRVALFRDWIDGVLNNP  220 (225)
T ss_dssp             --TEEEEECSSSSCBCCTTCTTCEEEET-------TEEEEEEEEECSSTT-SSCEEEEEGGGGHHHHHHHHHSC
T ss_pred             --ccceeeecccccccccCCCCCCEEEe-------CEEEEEEEECCCCCC-CCCCEEEEHHHHHHHHHHHHCCC
Confidence              34566655677889999999999974       369999999986654 45999999999999999999854

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-45  Score=310.33  Aligned_cols=238  Identities=32%  Similarity=0.626  Sum_probs=192.3

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCC-ceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~-~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |+||++|+.++|||+|+|+.++.++|+||||+++||||||||+.+... ..+.+..+...............+..++.|+
T Consensus         1 iigG~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (254)
T d2bz6h1           1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPS   80 (254)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECGGGGTTCSCGGGEEEEESCCBTTCCCSCCEEEEEEEEEEET
T ss_pred             CCCCEECCCCCCCcEEEEEECCCEEEEEEEeCCCEEEECcccccCCCCcccceeeccceeeccccccceeeeeeeeeecc
Confidence            789999999999999999999999999999999999999999987554 5667777777666656667778888999999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCC---CCCCCCceEEEEecccCCCCCCCccceeEeeeecc-c--cc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE---TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP-A--CK  198 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~---~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~-~--c~  198 (286)
                      .|......+|||||||++|+.|+..++|+||+....   .......+.+.|||.+................+.. .  |.
T Consensus        81 ~~~~~~~~~DiAll~L~~~v~~~~~i~picl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (254)
T d2bz6h1          81 TYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQ  160 (254)
T ss_dssp             TCCTTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHHHH
T ss_pred             cccccccccceeEEEecCcccccceEeeeecCccccccccccCCceEEEeccCccCCCCcccccceeeeecccchhhhhh
Confidence            999999999999999999999999999999986321   23345678999999886655554444444444433 1  11


Q ss_pred             cc------ccCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHh
Q psy10841        199 HY------EDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMS  272 (286)
Q Consensus       199 ~~------~~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~  272 (286)
                      ..      ......++|..........|.||+||||++..   +++|+|+||+||+..|+..+.|++||||+.|++||++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdsGgPl~~~~---~~~~~lvGi~S~g~~c~~~~~p~vytrv~~~~~WI~~  237 (254)
T d2bz6h1         161 QSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHY---RGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQK  237 (254)
T ss_dssp             HSCCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEEE---TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHH
T ss_pred             hhhcccccccccccceeeeccCCCcccccCccccceEEcc---CCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHH
Confidence            11      12344556665556677899999999999877   7899999999999999888899999999999999999


Q ss_pred             hhcccccccCCcCC
Q psy10841        273 NSERAKVECGGIHS  286 (286)
Q Consensus       273 ~~~~~~~~~~~~~~  286 (286)
                      +|+++.-+...+||
T Consensus       238 ~i~~~~~~~~~~~~  251 (254)
T d2bz6h1         238 LMRSEPRPGVLLRA  251 (254)
T ss_dssp             HHTSCCCSSSEEEE
T ss_pred             HHhhCCCCCCCcCC
Confidence            99998877766653

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-46  Score=310.06  Aligned_cols=225  Identities=40%  Similarity=0.813  Sum_probs=183.1

Q ss_pred             eecCeeCCCCccceEEEEeeCC---eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRDG---FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVM  122 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~---~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~  122 (286)
                      |+||++|+.+||||+|.|+..+   .++|+||||+++||||||||+.+.......+.++... .......+.++|.++++
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~i~~   79 (243)
T d2fpza1           1 IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQLRE-QHLYYQDQLLPVSRIIV   79 (243)
T ss_dssp             CBSCEECCTTSCTTEEEEEECSSSCEEEEEEEEEETTEEEECHHHHCSBCCCGGGEEEECCC-SBTTTTCCCEEEEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEECCCcccEEEEEEEEeCCEEEECceeccCCCCcceeEEEEeee-cccccccEEEeeeeeec
Confidence            6899999999999999997543   4689999999999999999997765533333333222 22234567899999999


Q ss_pred             CCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCC--CCccceeEeeeecc--ccc
Q psy10841        123 HSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGP--DPDHMREVQVPILP--ACK  198 (286)
Q Consensus       123 hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~--~~~~l~~~~~~~~~--~c~  198 (286)
                      ||+|+.....+|||||||++|+.+++.++|+|||........+..+.+.+||.......  ....++...+++++  .|+
T Consensus        80 hp~~~~~~~~~diAli~L~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~  159 (243)
T d2fpza1          80 HPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICD  159 (243)
T ss_dssp             CTTCSCTTTSCCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCCCTTCBCEEEEEEEECHHHHH
T ss_pred             cccccccccccchhhhcccCccccceeEEEeecCchhhccCCCceeEEEecccccCCCcCCCCcEeEEEEEeecCHHHhh
Confidence            99999999999999999999999999999999998777777788899999987755433  34567888888887  576


Q ss_pred             cccc-----------CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcH
Q psy10841        199 HYED-----------RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFV  267 (286)
Q Consensus       199 ~~~~-----------~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~  267 (286)
                      ..+.           .....+|..  ......|.||+||||++..   +++|+|+||+|++..|+..+.|.+||||++|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~gdsGgpl~~~~---~~~~~L~Gi~s~~~~~~~~~~p~v~t~v~~y~  234 (243)
T d2fpza1         160 AKYHLGAYTGDDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKV---NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYL  234 (243)
T ss_dssp             HHHHTTBCSCTTSCSSCTTEEEEC--CSSSBCCTTCTTCEEEEEE---TTEEEEEEEEEECSSSSBTTBCEEEEEGGGGH
T ss_pred             hhhhcccccCCccceeeeeeEecC--CCCCCCccCCCCCeEEEee---CCEEEEEEEEEECCCCCCCCCCEEEEEHHHHH
Confidence            5432           223345554  5567899999999999877   68999999999999998888899999999999


Q ss_pred             HHHHhhhcc
Q psy10841        268 PWLMSNSER  276 (286)
Q Consensus       268 ~WI~~~~~~  276 (286)
                      +||++++++
T Consensus       235 ~WI~~~i~~  243 (243)
T d2fpza1         235 DWIHHYVPK  243 (243)
T ss_dssp             HHHTTTSCC
T ss_pred             HHHHHHhCC
Confidence            999999875

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-45  Score=306.40  Aligned_cols=224  Identities=31%  Similarity=0.565  Sum_probs=182.2

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCC--CceEEeeeEEEEC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSP--TEQVRPVSRIVMH  123 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~--~~~~~~v~~~~~h  123 (286)
                      |+||.++.. .+||+|+|++++.++|+||||+++||||||||+.+.....+.|++|..+......  ..+.+.+..+..|
T Consensus         1 ~~~g~~~~~-~~~w~vsi~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~   79 (234)
T d1si5h_           1 VVNGIPTRT-NIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYG   79 (234)
T ss_dssp             CBSCEECSS-CCTTEEEEEESSSEEEEEEEEETTEEEEEGGGCSSSCGGGEEEEESCSBSSCSTTTTTCEEEEEEEEEEC
T ss_pred             CCCCEeCCC-CcCeEEEEEECCcEEEEEEEEeCCEEEECcCccCCCCCccceEEEEeecccccccceeEEEEeeccccCC
Confidence            689999976 5999999999999999999999999999999998877788899999776544322  2234445555555


Q ss_pred             CCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccccc
Q psy10841        124 SMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYE  201 (286)
Q Consensus       124 p~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~  201 (286)
                      |+      .+|||||||++|+.|+++++||||+...........+.+.||+.... ......++...+.+++  .|...+
T Consensus        80 ~~------~~DIAll~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~  152 (234)
T d1si5h_          80 PE------GSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGL-INYDGLLRVAHLYIMGNEKCSQHH  152 (234)
T ss_dssp             SS------TTCEEEEEESSCCCCSSSCCCCBCCCTTCCCCTTCEEEEEESSCCCC-SSCCCBCEEEEEEEECGGGTCC--
T ss_pred             Cc------ccceEEEeeccCccccccccccccccccccCCcceeEEEeccccccc-ccccceeEEEEeeccchhHhhhhh
Confidence            54      47999999999999999999999998776666677778888875533 3345678888888776  454433


Q ss_pred             ----cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        202 ----DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       202 ----~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                          ...+.++|+.......+.|.||+||||++..   +++|+|+||+|++..|+..+.|.+||||++|++||+++|++.
T Consensus       153 ~~~~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~---~~~~~l~Gi~s~g~~c~~~~~p~vyt~i~~~~~WI~~~i~~~  229 (234)
T d1si5h_         153 RGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQ---HKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTY  229 (234)
T ss_dssp             -----CCTTEEEEECSSSCCBCCTTCTTCEEEEEC---SSSEEEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHSSC
T ss_pred             ccccccCCccEEEccCCcCCCCCcCccccceEEec---CCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHhhcC
Confidence                3567899998767778999999999999876   789999999999999988788999999999999999999887


Q ss_pred             ccc
Q psy10841        278 KVE  280 (286)
Q Consensus       278 ~~~  280 (286)
                      ..+
T Consensus       230 ~~~  232 (234)
T d1si5h_         230 KVP  232 (234)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-45  Score=301.53  Aligned_cols=216  Identities=27%  Similarity=0.509  Sum_probs=185.4

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++|..+||||+|+|+.++.++|+||||+++||||||||+.+.....+.+.++..+..... ....+.+..++.|+.
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~C~G~LIs~~~VLTaAhC~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~   79 (218)
T d2z7fe1           1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRRE-PTRQVFAVQRIFENG   79 (218)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSCGGGCEEEESCSBTTSCC-TTCEEEEEEEEEESC
T ss_pred             CCCCEECCCCCCCcEEEEEECCCeEEEEEEEeCCEEEECeEecccccccceeeeeeeccccccc-cceeeeeeeeEeeec
Confidence            6899999999999999999999999999999999999999999887777778888876655433 456677788899999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc-cccccccCC
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP-ACKHYEDRI  204 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~-~c~~~~~~~  204 (286)
                      |+.....+|||||+|++|+.|++.++|||||..+........+.++||+.....+.....++.+.+.+.+ .|.      
T Consensus        80 ~~~~~~~~diall~l~~~~~~~~~~~pi~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~c~------  153 (218)
T d2z7fe1          80 YDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCR------  153 (218)
T ss_dssp             CBTTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCEEEEEESSBCSSSCCBCSBCEEEEEEEECTTCC------
T ss_pred             cccccccceEEEeeccccceeeeeeeeeeeccCccccCCCcEEEEeccceeecccccccceeEEEecccccccc------
Confidence            9999999999999999999999999999999877767777889999999887777777788888888776 454      


Q ss_pred             CCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        205 ADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       205 ~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                      ..+.|+.......+.|.||+||||++.       ++|+||+||+. .|+....|++|+||++|++||+++++
T Consensus       154 ~~~~~~~~~~~~~~~C~gdsG~Pl~~~-------~~l~GI~s~~~~~c~~~~~p~vft~v~~~~~WI~~~i~  218 (218)
T d2z7fe1         154 RSNVCTLVRGRQAGVCFGDSGSPLVCN-------GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             TTSEEEECTTSCCBCCTTCTTCEEEET-------TEEEEEEEEESSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             eeeeeeeecCcccCccccccCCCEEEC-------CEEEEEEEEecCCCCCCCcCEEEEEhHHhHHHHHHHhC
Confidence            345677655566778999999999974       36999999986 68777789999999999999999875

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.7e-45  Score=299.81  Aligned_cols=217  Identities=32%  Similarity=0.589  Sum_probs=182.8

Q ss_pred             eecCeeCCCCccceEEEEee---CCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYR---DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVM  122 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~---~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~  122 (286)
                      |+||++|..+||||+|.|..   +..++|+||||+++||||||||+..    .....++...........+.+.|+++++
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTaAhC~~~----~~~~~~~~~~~~~~~~~~~~~~V~~i~~   76 (224)
T d1eufa_           1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGS----SINVTLGAHNIMERERTQQVIPVRRPIP   76 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESSSSEEEEEEEEEETTEEEECGGGCCE----EEEEEESCSBTTSCCTTCEEEEEEEEEE
T ss_pred             CCCCEECCCCCCCCEEEEEEEcCCCcEEEEEEEEcCCEEEeeceeccc----ccceeeeeeeecccCCCcEEEEEEEEEE
Confidence            78999999999999999963   3467899999999999999999853    3456777766666666778899999999


Q ss_pred             CCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccc
Q psy10841        123 HSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHY  200 (286)
Q Consensus       123 hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~  200 (286)
                      ||+|+.....+|||||||++|+.|+..+.|+|++........+..+.+.|||.+.........++...+.+++  +|+..
T Consensus        77 hp~~~~~~~~~DiAll~L~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~C~~~  156 (224)
T d1eufa_          77 HPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIAR  156 (224)
T ss_dssp             CTTCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCTHHHHTT
T ss_pred             CCccccccccccceeeeccceeEEeeeEeeeeeecccccccCCceEEEecccceeccccccccceeeeeccCCHHHHHHH
Confidence            9999999999999999999999999999999999877777788899999999987777777778888888887  57665


Q ss_pred             cc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        201 ED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       201 ~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                      +.  ....++|..........|.+|+||||++..       +|+||+|++..|+  +.|.+||||+.|++||+++|+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~c~~dsGgpl~~~~-------~l~Gi~s~g~~~~--~~p~vft~V~~y~~WI~~~ik  224 (224)
T d1eufa_         157 FKNYIPFTQICAGDPSKRKNSFSGDSGGPLVCNG-------VAQGIVSYGRNDG--TTPDVYTRISSFLSWIHSTMR  224 (224)
T ss_dssp             CTTCCTTTEEEESCTTSCCBCCTTCTTCEEEETT-------EEEEEEEECCTTC--CSCEEEEEGGGTHHHHHHHTC
T ss_pred             hccccccceeeeeccccccccccCCCCCeEEEcC-------EEEEEEEEcCCCC--CCCeEEEEHHHHHHHHHHHhC
Confidence            43  334455555445667899999999999743       7999999998886  469999999999999999985

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=100.00  E-value=4.2e-45  Score=301.26  Aligned_cols=218  Identities=37%  Similarity=0.696  Sum_probs=181.4

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCc-eEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKH-YFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~-~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |+||++|..+||||+|.|+.++.++|+||||+++||||||||+...... .+.......   ......+...|.++++||
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~h~   77 (222)
T d1eq9a_           1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTN---YLSESGDVYDVEDAVVNK   77 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEECSSSEEEECHHHHTTCSCGGGEEEEESCS---BTTSCCEEEEEEEEEECT
T ss_pred             CCCCEECCCCCCCcEEEEEECCCEEEEEEEEeCCEEEECceeccccccccceeeeccee---ccccCcceeeeeeEEEee
Confidence            7899999999999999999899999999999999999999999876543 323322222   223356788999999999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccccc-
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYE-  201 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~-  201 (286)
                      +|+.....+|||||+|++++.++++++|+||+.... ......+.++||+.+...+.....++...+...+  .|.... 
T Consensus        78 ~y~~~~~~~diAll~L~~~~~~~~~v~pi~l~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  156 (222)
T d1eq9a_          78 NYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDE-DLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW  156 (222)
T ss_dssp             TCBTTTTBCCCEEEEESSCCCCBTTBCCCEECSCCT-TCTTSEEEEEECCCSSTTCCCCSBCEEEEEEEECHHHHHHHSS
T ss_pred             cccccccccceehhhccCCccccccccccccccccc-ccccceeEEeeeeeecCCCCCCccceEEEEEEechHHhccccc
Confidence            999999999999999999999999999999987543 4455789999999887777777888888888887  465543 


Q ss_pred             cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        202 DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       202 ~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      ...+.++|+.. ......|.+|+||||++.       ++|+||+|++..|.. +.|.+|+||++|++||++++++
T Consensus       157 ~~~~~~~c~~~-~~~~~~c~~d~G~pl~~~-------~~L~GI~s~~~~c~~-~~p~vyt~v~~y~~WI~~~i~~  222 (222)
T d1eq9a_         157 RVIDSHICTLT-KRGEGACHGDSGGPLVAN-------GAQIGIVSFGSPCAL-GEPDVYTRVSSFVSWINANLKK  222 (222)
T ss_dssp             SCCTTEEEECC-CTTCBCCTTCTTCEEEET-------TEEEEEEEECSTTTS-SSCEEEEEGGGGHHHHHHTSCC
T ss_pred             cccCcceEecc-CCCCCccccCCcCCEEEc-------CEEEEEEEECCCCCC-CCCcEEEEHHHHHHHHHHHhcC
Confidence            35677899976 456789999999999973       369999999999975 5799999999999999999875

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=100.00  E-value=4.3e-45  Score=301.87  Aligned_cols=217  Identities=35%  Similarity=0.684  Sum_probs=181.9

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|+|..++.++|+||||+++||||||||+.........+..+....   ......+.+..++.||+
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~h~~   77 (224)
T d1gdna_           1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSR---TSGGITSSLSSVRVHPS   77 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSCGGGEEEEESCSBS---SSSSEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCCCcEEEEEECCCEEEEEEEEeCCEEEECcccceeccccccceeeccccc---cCCcceEEEEEEEeeec
Confidence            789999999999999999999999999999999999999999988777666676665443   23566777888999998


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCC-CCCccceeEeeeecc--ccccccc
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPILP--ACKHYED  202 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~--~c~~~~~  202 (286)
                      |...  .+|||||||++|+.+++.++|+|++........+..+.+.|||.+.... .....++...+.+++  .|+..+.
T Consensus        78 ~~~~--~~DiAll~L~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~v~~i~~~~C~~~~~  155 (224)
T d1gdna_          78 YSGN--NNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYG  155 (224)
T ss_dssp             CBTT--BSCCEEEEESSCCCCBTTBCCCCBCCTTCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHHHHHC
T ss_pred             cccc--cceeEEEeeccccccccccceeeccccccccccceeeeeeccCccccCCCcCCCEeeeeEEEEeCHHHHhcccc
Confidence            8754  5899999999999999999999999876666678899999999875443 345678889999887  5876543


Q ss_pred             ---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhh
Q psy10841        203 ---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN  273 (286)
Q Consensus       203 ---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~  273 (286)
                         ..+.++|+.........|.+|+||||++      .+|+|+||+|++..|+..+.|.+|+||++|++||++.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~c~~dsG~pl~~------~~~~l~GI~S~g~~c~~~~~p~vyt~v~~y~~WIe~~  223 (224)
T d1gdna_         156 TSAITNQMFCAGVSSGGKDSCQGDSGGPIVD------SSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTY  223 (224)
T ss_dssp             TTTSCTTEEEECCTTCCCBCCTTCTTCEEEC------TTCCEEEEEEECSSSSCTTCCEEEEETTTTHHHHHHH
T ss_pred             cCccccceeeeecCCCCccccccccCCceEe------cCCEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHC
Confidence               4456777776667778999999999983      3468999999999998888899999999999999864

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-45  Score=303.67  Aligned_cols=225  Identities=32%  Similarity=0.636  Sum_probs=185.0

Q ss_pred             eecCeeCCCCccceEEEEeeCC-eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDG-FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~-~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |+||++|..++|||+|+|++.. .++|+||||+++||||||||+.+....  .+..............+.+.++++++||
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~~C~GtlIs~~~VLTaAhCv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~h~   78 (233)
T d2p3ub1           1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRF--KVRVGDRNTEQEEGGEAVHEVEVVIKHN   78 (233)
T ss_dssp             CBSSEECCTTSCTTEEEEECTTSCEEEEEEECSSSEEEECGGGGGSCSSC--EEEESCSBTTSCCSCCEEEEEEEEEECT
T ss_pred             CCCCEECCCCCCCcEEEEEecCCCeEEEEEEEeCCEEEECceeccccccc--ccccccccccccCCCceeecceeEEEee
Confidence            7899999999999999997654 688999999999999999999765543  3333333333334466778899999999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCC---CCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE---TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~---~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~  199 (286)
                      +|+.....+|||||+|++|+.|+++++|+|||....   .......+.+.+|+.....+.....++...+.+.+  .|..
T Consensus        79 ~~~~~~~~~diAll~L~~pv~~~~~v~pi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~  158 (233)
T d2p3ub1          79 RFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL  158 (233)
T ss_dssp             TCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTSCBCSBCEEEEEEBCCHHHHHH
T ss_pred             cccccccccceeeeecccceeecccccccccCCcccccccccccceEEEecCCccccCCCccccccccccccccchhhhc
Confidence            999999999999999999999999999999987422   23445677888998776666666777888888776  4765


Q ss_pred             ccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        200 YED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       200 ~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                      .+.  .....+|+.........|.||+||||++..   +++|+|+||+|++..|+..+.|++|+||++|++||+++|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~---~~~~~L~Gv~s~g~~c~~~~~p~vyt~v~~y~~WI~~~i~  233 (233)
T d2p3ub1         159 SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRF---KDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK  233 (233)
T ss_dssp             HCSSCCCTTEEEESCSSSSCBCCTTTTTCEEEEEE---TTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHTC
T ss_pred             ccCceEeecceeeecccccCCCcCCCcccccEEec---CCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            544  456678887667778899999999999977   7899999999999999888889999999999999999885

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-44  Score=301.64  Aligned_cols=220  Identities=38%  Similarity=0.730  Sum_probs=181.1

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++++.++|||+|+|+.++.++|+||||+++||||||||+.+..    .+.+|...........+.+.+.+++.||.
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTaAhCv~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (237)
T d1ao5a_           1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYVDQY----EVWLGKNKLFQEEPSAQHRLVSKSFPHPG   76 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECTTCCCSSC----EEEESCCBSSSCCSSCEECCEEEEEECTT
T ss_pred             CCCCEECCCCCCCcEEEEEECCcEEEEEEEeeCCEEEECHHHcCCCc----eEEEEeccccccccccEEEEEEEEeeccc
Confidence            78999999999999999999999999999999999999999996533    67888777766666778888999999999


Q ss_pred             CCCC-----------CCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCC-CCCCccceeEeeee
Q psy10841        126 FKRA-----------EMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEH-GPDPDHMREVQVPI  193 (286)
Q Consensus       126 y~~~-----------~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~~~  193 (286)
                      |+..           .+.+|||||||++++.|++.++|+|||...  ......+++.||+..... ......+....+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~DiAll~L~~~i~~~~~~~~i~lp~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  154 (237)
T d1ao5a_          77 FNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKE--PKPGSKCLASGWGSITPTRWQKPDDLQCVFITL  154 (237)
T ss_dssp             SCGGGGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSC--CCTTCEEEEEESCCSSCC-CCCCSBCEEEEEEE
T ss_pred             ccccccccccccCccccccceeeeccCcccccccccceeccCCCC--CcccceEEEeeeeeeccccccCCccceeeEEEE
Confidence            8643           245899999999999999999999999844  345578999999976544 23345666777777


Q ss_pred             cc--ccccccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCCCCCCCeeEEeCCCcHH
Q psy10841        194 LP--ACKHYED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVP  268 (286)
Q Consensus       194 ~~--~c~~~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~~~~~p~v~t~v~~~~~  268 (286)
                      ++  .|.....  ..+.++|+.........|.||+||||++.       ++|+||+|+|. .|+..+.|.+||||++|++
T Consensus       155 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~gdsG~pl~~~-------~~l~Gi~S~g~~~c~~~~~p~vft~V~~y~~  227 (237)
T d1ao5a_         155 LPNENCAKVYLQKVTDVMLCAGEMGGGKDTCRDDSGGPLICD-------GILQGTTSYGPVPCGKPGVPAIYTNLIKFNS  227 (237)
T ss_dssp             ECHHHHHHHCSSCCCTTEEEEECTTCSCBCCTTCTTCEEEET-------TEEEEEEEECCSSTTCTTCCEEEECGGGGHH
T ss_pred             EehHHhhhhhcCCCCCCeEEEccCCCCCcccCCCCCCeeEEc-------cEEEEEEEEecCCCCCCCCCeEEEEHHHHHH
Confidence            76  4654433  55678888766667789999999999963       37999999987 5877788999999999999


Q ss_pred             HHHhhhcccc
Q psy10841        269 WLMSNSERAK  278 (286)
Q Consensus       269 WI~~~~~~~~  278 (286)
                      ||+++|++.+
T Consensus       228 WI~~~i~~n~  237 (237)
T d1ao5a_         228 WIKDTMMKNA  237 (237)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhcC
Confidence            9999997653

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-44  Score=298.58  Aligned_cols=218  Identities=32%  Similarity=0.646  Sum_probs=184.2

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++|..++|||+|.|. ++.++|+||||+++||||||||+.+..    .+.+|...............+..+++||.
T Consensus         1 i~GG~~a~~~~~Pw~v~l~-~~~~~C~GtLIs~~~VLTaAhC~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (223)
T d1hj9a_           1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGI----QVRLGEDNINVVEGNEQFISASKSIVHPS   75 (223)
T ss_dssp             CCSCEECCTTSSTTEEEEE-SSSEEEEEEEEETTEEEECGGGCCSSC----EEEESCSSTTSCCSCCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCCCeEEEEE-CCCEEEEEEEeeCCEEEeCeeECCCcC----cceecccccccccceeeeeceeeEEeccc
Confidence            7899999999999999995 566889999999999999999996543    45666666665556678889999999999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCC-CCCCccceeEeeeecc--ccccccc
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEH-GPDPDHMREVQVPILP--ACKHYED  202 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~~~~~--~c~~~~~  202 (286)
                      |+.....+|||||+|++++.++..++|+||+...  ......+.+.||+.+... ......++...+.+++  +|+..+.
T Consensus        76 ~~~~~~~~diAll~l~~~~~~~~~~~p~cl~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~  153 (223)
T d1hj9a_          76 YNSNTLNNDIMLIKLKSAASLNSRVASISLPTSC--ASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYP  153 (223)
T ss_dssp             CCTTTCTTCCEEEEESSCCCCBTTBCCCBCCSSC--CCTTCEEEEEESSCCCSSSCCCCSSCEEEEEECCCHHHHHHHST
T ss_pred             cccccccchhhhhhcccceeeeeeeecccccccc--ccccceEEEEeeccccCCCCCCCccceEEEEeecCHHHHHHHhC
Confidence            9999999999999999999999999999998844  344578899999876544 3345678888888887  6877654


Q ss_pred             --CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        203 --RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       203 --~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                        ..+..+|+.........|.||+|+||++..       +|+||+|++..|+..+.|++|+||++|++||+++|++.
T Consensus       154 ~~~~~~~~c~~~~~~~~~~~~gd~g~pl~~~~-------~L~Gi~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i~~~  223 (223)
T d1hj9a_         154 GQITSNMFCAYGLEGKGDSCQGDSGGPVVCSG-------KLQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTIASN  223 (223)
T ss_dssp             TTCCTTEEECCCCCCCCCCCTTCTTCEEEETT-------EEEEEEEECSCCCCCCCCCEEEEGGGGHHHHHHHHTTC
T ss_pred             CcccccceEEeecCCCcccccCCCCceeEEeC-------EEEEEEEEcCCCCCCCCCEEEEEHHHHHHHHHHHHhcC
Confidence              467789998766778899999999999743       69999999999988888999999999999999999763

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-44  Score=297.86  Aligned_cols=216  Identities=30%  Similarity=0.574  Sum_probs=183.0

Q ss_pred             eecCeeCCCCccceEEEEeeC---CeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRD---GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVM  122 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~---~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~  122 (286)
                      |+||++|+.+||||+|.|+..   +.++|+||||+++||||||||+.......+.|.+|........ ..+.+.+.+++.
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~v~~g~~~~~~~~-~~~~~~~~~~~~   79 (221)
T d1fuja_           1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVRTQE-PTQQHFSVAQVF   79 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTBTTCCCEEEEEEETTEEEECGGGGSSSCGGGEEEEESCSBTTSCC-TTCEEEEEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEEecCCCCEEEEEEEEeCCEEEEeeEEEeecCCccceeeeecccccccc-ccceeeeeeeEE
Confidence            689999999999999999743   3578999999999999999999988888888999877665533 456778899999


Q ss_pred             CCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc-cccccc
Q psy10841        123 HSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP-ACKHYE  201 (286)
Q Consensus       123 hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~-~c~~~~  201 (286)
                      ||.|+.....+|||||||++++.|+++++|+|||..+.....+..+++.||+.....+.....+....+.+.+ .|.   
T Consensus        80 ~~~~~~~~~~~diAll~L~~~~~~~~~v~picl~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~~---  156 (221)
T d1fuja_          80 LNNYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCR---  156 (221)
T ss_dssp             ECCCBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSCSSSCBCSBCEEEEEEEECTTCC---
T ss_pred             EeeecCCCCccEEEEEEccccccccceEEEEEecccccccCCCceEEEecccccccccccCccceeeeeeeeeeccc---
Confidence            9999999999999999999999999999999999977777778899999999887777767778888777765 232   


Q ss_pred             cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        202 DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       202 ~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                         ....|..........|.||+||||++..       +|+||+|++. +|+..+.|.+||||+.|++||+++|+
T Consensus       157 ---~~~~~~~~~~~~~~~c~gd~G~pl~~~~-------~l~Gi~s~~~~gc~~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1fuja_         157 ---PHNICTFVPRRKAGICFGDSGGPLICDG-------IIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             ---TTEEEEECSSSSCBCCTTCTTCEEEETT-------EEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             ---cccceeccccCCCceeCCccCCCEEEeC-------EEEEEEEEEECCCCCCCCCeEEEEHHHhHHHHHHHhC
Confidence               2233443446778999999999999743       7999999986 78877889999999999999999985

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=100.00  E-value=3.2e-45  Score=303.25  Aligned_cols=219  Identities=29%  Similarity=0.600  Sum_probs=182.6

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++|..+||||+|+|+.++.++|+||||+++||||||||+....  ...+.+|...........+.+.+.++++||+
T Consensus         1 i~gG~~a~~~~~Pw~V~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~i~~~~~   78 (226)
T d1azza_           1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGAG--FVDVVLGAHNIREDEATQVTIQSTDFTVHEN   78 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTTEEEEEEEEETTEEEECHHHHTTCS--CEEEEESCSBSSSCCTTCEEEEECCEEECTT
T ss_pred             CCCCEECCCCCCCcEEEEEECCcEEEEEEEeeCCEEEEChhhccCCc--ceEEEeccceeccCCcceEEEEeeeeeeccc
Confidence            68999999999999999998888999999999999999999997543  4567778777766666778899999999999


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCC-CCCccceeEeeeecc--ccccccc
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPILP--ACKHYED  202 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~--~c~~~~~  202 (286)
                      |+.....+|||||+|++++.++..++|+||+...  ......+.++|||.+.... .....++..++.+++  .|+..+.
T Consensus        79 y~~~~~~~diAll~l~~~~~~~~~~~pi~l~~~~--~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~  156 (226)
T d1azza_          79 YNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTD--VGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYG  156 (226)
T ss_dssp             CBTTTTBSCCEEEECSSCCCCCSSSCCCBCCSSC--CCTTCEEEEEESSCSSTTCSSSCSBCEECCEEEECHHHHHHHHS
T ss_pred             cccccccchhhhhhcCCccceeeccccccccccc--cccccceeeecccccCCCcCccccEeEEEEEEEEeHHHhhhhhC
Confidence            9999999999999999999999999999998843  4455788999999876543 335678888888887  5877655


Q ss_pred             C-CCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCC-CCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        203 R-IADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCA-RPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       203 ~-~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~-~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      . ...++|... ....+.|.||+||||++.       ++|+||+|++..|+ ..+.|++|+||++|++||+++++-
T Consensus       157 ~~~~~~~~~~~-~~~~~~c~gdsG~Pl~~~-------~~l~Gi~S~g~~~~~~~~~p~v~t~v~~y~~WI~~~~g~  224 (226)
T d1azza_         157 IVTDGNICIDS-TGGKGTCNGDSGGPLNYN-------GLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQTGI  224 (226)
T ss_dssp             CCCTTEEEECC-TTTCBCCTTCTTCEEEET-------TEEEEEEEEEETTCTTSCCCEEEEESGGGHHHHHHHHCC
T ss_pred             cccccceeccc-cCCCccccCCcCCCEEEc-------CEEEEEEEEeCCCCCCCCCCEEEEEHHHhHHHHHHHhCC
Confidence            3 344555543 456788999999999864       37999999998654 556799999999999999999874

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-45  Score=309.27  Aligned_cols=225  Identities=32%  Similarity=0.667  Sum_probs=180.4

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCC--CCceEEEEEeeeecccCCCCceEEeeeEEEEC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGF--EKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMH  123 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~--~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~h  123 (286)
                      |+||++++.++|||+|+|+.  .++|+||||+++||||||||+.+.  ....+.+..|..+..  ....+.+.+.++++|
T Consensus         1 i~gG~~~~~g~~Pw~v~i~~--~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~v~~~~~~~~--~~~~~~~~v~~i~~h   76 (242)
T d1q3xa1           1 IYGGQKAKPGDFPWQVLILG--GTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRL--SPHYTQAWSEAVFIH   76 (242)
T ss_dssp             CBSCEECCTTSSTTEEEECS--SSSEEEEEETTTEEEECHHHHHHHHTTTCCCEEEESCSBTT--CSCSEEEEEEEEEEC
T ss_pred             CCCCEECCCCCcCcEEEEcC--CCEEEEEEEcCCEEEEChhhccCCCCCcceEEEEeeeeeec--cccccccceeeeEEe
Confidence            78999999999999999964  468999999999999999998543  234556666655433  345677889999999


Q ss_pred             CCCCCCC-CCCceEEEEecCccccCCceeeeecCCCCCC--CCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccc
Q psy10841        124 SMFKRAE-MTNDLALLQLAAPLRYNRYVRPICLPDVTET--PEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK  198 (286)
Q Consensus       124 p~y~~~~-~~~DiAllkL~~~i~~~~~v~picL~~~~~~--~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~  198 (286)
                      |+|+... ..+|||||||++|+.|++++.|+|++.....  ...+......||+.. ..+.....++.+.+.+.+  .|+
T Consensus        77 p~y~~~~~~~~DiAll~L~~~~~~~~~v~pic~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~l~~~~~~~~~~~~C~  155 (242)
T d1q3xa1          77 EGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCT  155 (242)
T ss_dssp             TTCCTTSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGGGSSTTCEEEEEESSCC-TTSSCCSBCEEEEEEEECHHHHH
T ss_pred             eccccccccCccccccccCCCccccccEEEEeccccccccccccceeeeeeecccc-ccCccccceeeeeccccCHHHHH
Confidence            9998765 5789999999999999999999999875432  334556677777765 334456778888888887  576


Q ss_pred             cccc--------CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCCCCCCCeeEEeCCCcHHH
Q psy10841        199 HYED--------RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPW  269 (286)
Q Consensus       199 ~~~~--------~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~~~~~p~v~t~v~~~~~W  269 (286)
                      ..+.        .....+|+.........|.+|+||||++.. ...++|+|+||+|++. .|+..+.|.+||||++|++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgpl~~~~-~~~~~~~l~Gi~S~g~~~c~~~~~p~vft~v~~~~~W  234 (242)
T d1q3xa1         156 AAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLD-SETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPW  234 (242)
T ss_dssp             HHTSSTTSCTTCSCTTEEEECCSSCCSBCCTTCTTCEEEEEE-TTTTEEEEEEEEEECCSSTTCTTCCEEEEEGGGGHHH
T ss_pred             hhhhcccccCceeccceeeeeccCCCccccccccccceEEee-CCCCeEEEEEEEEeCCCCCCCCCCCEEEEEHHHhHHH
Confidence            5442        345578887767778899999999999865 3468999999999987 68877889999999999999


Q ss_pred             HHhhhcc
Q psy10841        270 LMSNSER  276 (286)
Q Consensus       270 I~~~~~~  276 (286)
                      |++++++
T Consensus       235 I~~~v~~  241 (242)
T d1q3xa1         235 IENIISD  241 (242)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9999873

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=100.00  E-value=8.4e-45  Score=300.38  Aligned_cols=217  Identities=30%  Similarity=0.538  Sum_probs=187.2

Q ss_pred             eecCeeCCCCccceEEEEee----CCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYR----DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIV  121 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~----~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~  121 (286)
                      |+||++|..+||||+|+|..    +..++|+||||+++||||||||+.    ....|.+|...........+...|.+++
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaA~C~~----~~~~v~~g~~~~~~~~~~~~~~~v~~~~   76 (224)
T d3rp2a_           1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKG----REITVILGAHDVRKRESTQQKIKVEKQI   76 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEECTTSCEEEEEEEESSSSEEEECGGGCC----SEEEEEESCSBTTSCCTTCEEEEEEEEE
T ss_pred             CCCCEECcCCCCCCEEEEEEEeCCCCeEEEEEEEEcCCeeEecccccc----cccEEEeccccccCccccceeeeEEEEE
Confidence            68999999999999999963    235889999999999999999984    4578999988777666677888999999


Q ss_pred             ECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccc
Q psy10841        122 MHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       122 ~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~  199 (286)
                      +||+|+.....+|||||||++++.|++.++|+||+........+..+.+.||+.....+.....+++..+++++  .|..
T Consensus        77 ~~~~~~~~~~~~diall~L~~~v~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~~  156 (224)
T d3rp2a_          77 IHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVD  156 (224)
T ss_dssp             ECTTCCSSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSEEETTEEECSBCEEEEEEEECGGGTTT
T ss_pred             ecccccccccccceeeeeecceeEeccccceEEecccccccCCCcEEEEeeeeeeecCCCccceeeEEEEEccCHHHhhh
Confidence            99999999999999999999999999999999999877777778899999999887666666778999998887  5876


Q ss_pred             ccc-CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        200 YED-RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       200 ~~~-~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                      .+. ....++|+.........|.+|+||||++.       ++|+||+|++..|.  +.|.+|+||++|++||+++|+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~c~~d~G~Pl~~~-------~~l~Gi~S~g~~~~--~~p~vyt~v~~~~~WI~~vi~  224 (224)
T d3rp2a_         157 YRYYEYKFQVCVGSPTTLRAAFMGDSGGPLLCA-------GVAHGIVSYGHPDA--KPPAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             TTCCCTTTEEEECCTTSCCBCCTTTTTCEEEET-------TEEEEEEEECCTTC--CSCEEEEEHHHHHHHHHHHHC
T ss_pred             cccccccceeeeccCcccccCcCCCcCCeEEEc-------CEEEEEEEECCCCC--CCCeEEEEHHHHHHHHHHHhC
Confidence            544 55668888766677788999999999974       37999999998775  469999999999999999875

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-44  Score=297.93  Aligned_cols=217  Identities=34%  Similarity=0.611  Sum_probs=186.1

Q ss_pred             eecCeeCCCCccceEEEEeeC---CeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRD---GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVM  122 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~---~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~  122 (286)
                      |+||++|+.+||||+|.|+..   +.++|+||||+++||||||||+.+    ...+.+|...............+++++.
T Consensus         1 IvgG~~a~~~e~Pw~v~i~~~~~~~~~~C~GtlI~~~~VLTaAhC~~~----~~~v~~g~~~~~~~~~~~~~~~v~~i~~   76 (224)
T d1t32a1           1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGS----NINVTLGAHNIQRRENTQQHITARRAIR   76 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEESSSTTSCEEEEEEEETTEEEECGGGCCS----CEEEEESCSBTTSCCTTCEEEEEEEEEE
T ss_pred             CCCCEECCCCCCCCEEEEEEEcCCCCEEEEEEEEcCCEEEEeEEcccc----cccceeeeeeeeccccceeeecceeEEE
Confidence            789999999999999999643   357999999999999999999853    4578888877766666777888999999


Q ss_pred             CCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccc
Q psy10841        123 HSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHY  200 (286)
Q Consensus       123 hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~  200 (286)
                      ||+|......+||||++|..++.|++.++|+|||...........+..+|||... .......+++..+.+++  +|+..
T Consensus        77 ~~~~~~~~~~~diaL~~l~~~~~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~~-~~~~~~~l~~~~~~~~~~~~C~~~  155 (224)
T d1t32a1          77 HPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVS-MRRGTDTLREVQLRVQRDRQCLRI  155 (224)
T ss_dssp             CTTCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSS-SSCCCSBCEEEEEEBCCHHHHHHH
T ss_pred             eecccccccccceeEEeeccccccCcccCccccccccccCCCCCEEEEecccccc-cCCCcceeeeeeeeecCHHHHHhh
Confidence            9999999999999999999999999999999999977777778899999999764 34456778888888887  68776


Q ss_pred             cc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        201 ED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       201 ~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      +.  ..+.++|+.........|.||+||||++..       +|+||+|++..|+.  .|++||||++|++||+++|++
T Consensus       156 ~~~~~~~~~~c~~~~~~~~~~c~gdsGgPl~~~~-------~l~Gi~S~g~~~~~--~p~vyt~v~~y~~WI~~~i~~  224 (224)
T d1t32a1         156 FGSYDPRRQICVGDRRERKAAFKGDSGGPLLCNN-------VAHGIVSYGKSSGV--PPEVFTRVSSFLPWIRTTMRS  224 (224)
T ss_dssp             STTCCTTTEEEECCTTSSCBCCTTCTTCEEEETT-------EEEEEEEECCTTCC--SCEEEEEGGGSHHHHHHHHCC
T ss_pred             cCcccccccceeecccccccccccCcCCeEEEcC-------EEEEEEEEcCCCCC--CCcEEEEHHHhHHHHHHHHcC
Confidence            55  447789987767778899999999999743       69999999998875  499999999999999999874

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=100.00  E-value=1.1e-44  Score=300.19  Aligned_cols=221  Identities=33%  Similarity=0.688  Sum_probs=182.8

Q ss_pred             eecCeeCCCCccceEEEEeeC-CeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRD-GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |+||++|..+||||+|+|... +.++|+||||+++||||||||+.........+..+.  ........+.+.+..++.||
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   78 (228)
T d1fxya_           1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRN--TEQEEGGEAVHEVEVVIKHN   78 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTSCEEEEEEECSSSEEEECGGGTTSCSSCEEEEECSC--TTTCCCCEEEEEEEEEEECT
T ss_pred             CCCCEECCCCCCCcEEEEEEcCCCeEEEEEEeeCCEEEECceeeeccccccccccccc--ccccCCcceeeeeeccceee
Confidence            689999999999999999754 468899999999999999999987665544444332  22333455667778889999


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCC-CCCccceeEeeeecc--cccccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPILP--ACKHYE  201 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~~~--~c~~~~  201 (286)
                      .|......+||||++|+.++.++++++|||||...  ......+.++|||.+.... .....++...+.+++  .|+..+
T Consensus        79 ~~~~~~~~~diAl~~l~~~~~~~~~~~picL~~~~--~~~~~~~~~~gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~  156 (228)
T d1fxya_          79 RFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAP--PATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASY  156 (228)
T ss_dssp             TCBTTTTBTCCEEEEESSCCCCBTTBCCCCCCSSC--CCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHS
T ss_pred             eeeccccccceeehhcccccccccccccccccccc--cccccEEEEEecccccCCCCCCCchhEEEEEEEeCHHHHhhhc
Confidence            99998899999999999999999999999999844  3456789999999876543 345678888998888  587665


Q ss_pred             c--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        202 D--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       202 ~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                      .  ..+..+|+.........|.||+||||++..       +|+||+|++..|+..+.|.+|+||++|++||+++++++
T Consensus       157 ~~~~~~~~~c~~~~~~~~~~~~gd~G~Pl~~~~-------~l~Gi~s~g~~~~~~~~p~vft~v~~~~~WI~~~i~~~  227 (228)
T d1fxya_         157 PGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNG-------QLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAAN  227 (228)
T ss_dssp             TTTCCTTEEEESCTTCSCBCCTTCTTCEEEETT-------EEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHHHT
T ss_pred             CCcccceeeEeecCCCCcccccCccCccEEEeC-------EEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHhc
Confidence            4  457788987767778899999999999743       69999999999987788999999999999999999875

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-44  Score=297.77  Aligned_cols=216  Identities=31%  Similarity=0.650  Sum_probs=174.1

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++|+.++|||+|+|+.++.++|+||||+++||||||||+....    .+..................+..+..||.
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (225)
T d1npma_           1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKKQKY----SVRLGDHSLQSRDQPEQEIQVAQSIQHPC   76 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCCSSC----EEEESCSBTTC--CCCEEECEEEEEECTT
T ss_pred             CCCCEECCCCCCCCEEEEEECCcEEEEEEEEcCCEEEEchHhCcccc----ccccccccccccCCCcceeeeeeeEEEEe
Confidence            78999999999999999999999999999999999999999997644    23333333333334455667777888775


Q ss_pred             C---CCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCC-CCCCccceeEeeeecc--cccc
Q psy10841        126 F---KRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEH-GPDPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       126 y---~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~~~~~--~c~~  199 (286)
                      |   +.....+|||||||++|+.++..++|+||+...  ......++++|||.+... ......++...+.+++  .|+.
T Consensus        77 ~~~~~~~~~~~dIAll~L~~~~~~~~~~~~i~l~~~~--~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~  154 (225)
T d1npma_          77 YNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLC--PKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCER  154 (225)
T ss_dssp             CCSSCTTCCTTCCEEEEESSCCCCSSSSCCCEECSSC--CCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEECCHHHHHH
T ss_pred             eeccCcccchhhhhhhhcccccccccccccccccccc--ccCCceEEEeccceecCCCCCCCCccEEEEEEEecHHHHhh
Confidence            5   455678999999999999999999999999744  445678999999977544 3445778888888888  5876


Q ss_pred             ccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        200 YED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       200 ~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                      .+.  ..+.++|+.. ......|.||+||||++.       ++|+||+|++. .|+..+.|++|+||++|++||+++|+
T Consensus       155 ~~~~~~~~~~~C~~~-~~~~~~c~gd~G~pl~~~-------~~l~Gi~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~i~  225 (225)
T d1npma_         155 AYPGKITEGMVCAGS-SNGADTCQGDSGGPLVCD-------GMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             HSTTTCCTTEEEEEC-TTCCBCCTTCTTCEEEET-------TEEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             hccCCcCCCEEEecC-CCCCccccCCCCceEEEc-------cEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            554  5678999986 345789999999999973       47999999997 47776789999999999999999875

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.6e-44  Score=298.25  Aligned_cols=227  Identities=35%  Similarity=0.727  Sum_probs=185.0

Q ss_pred             eecCeeCCCCccceEEEEeeC--C--eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRD--G--FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIV  121 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~--~--~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~  121 (286)
                      |+||++++.+||||+|.|...  +  .++|+||||+++||||||||+.....  ..+.++...........+.+.|.+++
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~--~~v~~~~~~~~~~~~~~~~~~v~~~~   78 (241)
T d1brup_           1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRT--YRVVLGRHSLSTNEPGSLAVKVSKLV   78 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCTTSC--EEEEESCSBSSSCCTTCEEEEEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEEcCCCcceEEeEEEEEeCCEEEECeEeeecccc--cceeeeccceeccCCCccccceeeeE
Confidence            789999999999999999632  2  36899999999999999999976553  44555555444445567788999999


Q ss_pred             ECCCCCCCCC--CCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cc
Q psy10841        122 MHSMFKRAEM--TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC  197 (286)
Q Consensus       122 ~hp~y~~~~~--~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c  197 (286)
                      +||+|+....  ++|||||||+.++.++..++|||++........+..+.+.|||...........++...+..++  .|
T Consensus        79 ~~~~~~~~~~~~d~~iall~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~C  158 (241)
T d1brup_          79 VHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATC  158 (241)
T ss_dssp             ECTTCCTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSTTSCCCSBCEEEEEEEECHHHH
T ss_pred             EEeeeeeccccCCceEEEEecccccccccceeeeeeccccccCCCceeEEEEeeeccCCCCcCCCcceEEEEEEeCHHHh
Confidence            9999987764  4679999999999999999999999877777778899999999887666666778888888887  57


Q ss_pred             cccc----cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCC--CCCCCCCeeEEeCCCcHHHHH
Q psy10841        198 KHYE----DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG--CARPNEPGVYTRVSQFVPWLM  271 (286)
Q Consensus       198 ~~~~----~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~--c~~~~~p~v~t~v~~~~~WI~  271 (286)
                      +...    .....++|+.. ......|.||+||||++..  .+++|+|+||+|++..  |...+.|++|+||++|++||+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~-~~~~~~C~gdsGgPl~~~~--~~~~~~L~Gi~S~g~~~~c~~~~~p~vyt~v~~~~~WI~  235 (241)
T d1brup_         159 SKPGWWGSTVKTNMICAGG-DGIISSCNGDSGGPLNCQG--ANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWIN  235 (241)
T ss_dssp             TSTTTTGGGCCTTEEEECC-SSSSBCCTTCTTCEEEEEC--TTSCEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHH
T ss_pred             CccccccccccccceeecC-CCCccccCCCcccceEEEc--CCCCEEEEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHH
Confidence            6532    24455666654 5667899999999999864  3789999999999874  666778999999999999999


Q ss_pred             hhhccc
Q psy10841        272 SNSERA  277 (286)
Q Consensus       272 ~~~~~~  277 (286)
                      ++|+++
T Consensus       236 ~~i~~~  241 (241)
T d1brup_         236 SVIANN  241 (241)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            999863

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-44  Score=295.48  Aligned_cols=216  Identities=29%  Similarity=0.527  Sum_probs=184.9

Q ss_pred             cCeeCCCCccceEEEEee----CCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEEC
Q psy10841         48 GGKKAELGAWPWLIALYR----DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMH  123 (286)
Q Consensus        48 ~g~~a~~~~~Pw~v~i~~----~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~h  123 (286)
                      ||++|+++||||+|+|+.    ...++|+||||+++||||||||+..    .+.|.+|..+........+...+.+++.|
T Consensus         1 GG~~a~~~e~Pw~v~i~~~~~~~~~~~C~G~LIs~~~VLTaAhCv~~----~~~v~~g~~~~~~~~~~~~~~~~~~~~~~   76 (224)
T d1nn6a_           1 GGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGR----SITVTLGAHNITEEEDTWQKLEVIKQFRH   76 (224)
T ss_dssp             CCEECCTTSSTTEEEEEEECTTSCEEEEEEEEEETTEEEECGGGCCS----EEEEEESCSBTTSCCTTCEEEEEEEEEEC
T ss_pred             CCcCCcCCCCCCEEEEEEEeCCCCceEEEEEEEeCCEEEehhhcccc----cceEEecccccccccccccceeEEEEEEe
Confidence            799999999999999963    2357899999999999999999953    56899999888877777889999999999


Q ss_pred             CCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccccc
Q psy10841        124 SMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYE  201 (286)
Q Consensus       124 p~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~  201 (286)
                      |.|+.....+|||||+|.+++.++..++|+|++........+..+...||+.+...+.....++...+.+.+  .|+..+
T Consensus        77 p~~~~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  156 (224)
T d1nn6a_          77 PKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFR  156 (224)
T ss_dssp             TTCCTTTCTTCCEEEEESSCCCCCSSCCCCCCCSCCCCCCTTCEEEEEECCCCSSSCCCCSBCEEEEEEBCCGGGGTTST
T ss_pred             ecccccccccchhhhcccCCcccccccccccccccccccCCCceeeeccccccccCCCccccceEEEEEecCHHHHhhhc
Confidence            999999999999999999999999999999999877777778899999999877777777888888888887  586655


Q ss_pred             c-CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        202 D-RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       202 ~-~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      . .....+|+.........|.||+||||++.       ++|+||+|++..|.  +.|.+||||+.|++||+++|++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~c~gDsG~PL~~~-------~~l~GI~s~g~~~~--~~p~vyt~v~~y~~WI~~~i~~  223 (224)
T d1nn6a_         157 DFDHNLQLCVGNPRKTKSAFKGDSGGPLLCA-------GVAQGIVSYGRSDA--KPPAVFTRISHYRPWINQILQA  223 (224)
T ss_dssp             TCCTTTEEEECCTTTC--CCCCCTTCEEEET-------TEEEEEEEECCTTC--CSCEEEEEHHHHHHHHHHHHHT
T ss_pred             ccccceeeeccCccccccccCCCccceEEEC-------CEEEEEEEECCCCC--CCCeEEEEHHHHHHHHHHHHhc
Confidence            4 44567788765666789999999999973       37999999998765  4699999999999999999975

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-45  Score=305.92  Aligned_cols=218  Identities=31%  Similarity=0.594  Sum_probs=185.0

Q ss_pred             eecCeeCCCCccceEEEEee---CCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYR---DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVM  122 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~---~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~  122 (286)
                      |+||++|..+||||+|+|..   ++.++|+||||+++||||||||+..    ...+.+|...........+.+.+.++++
T Consensus         1 iigG~~a~~~~~Pw~v~l~~~~~~~~~~C~GtLIs~~~VLTaAhC~~~----~~~v~~g~~~~~~~~~~~~~~~v~~i~~   76 (227)
T d1fq3a_           1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIQDDFVLTAAHCWGS----SINVTLGAHNIKEQEPTQQFIPVKRPIP   76 (227)
T ss_dssp             CBTCBCCCTTSCTTEEECCEEETTEEECCEEEEEETTEEEECGGGCCS----EEEEEESCSBTTTTCTTCEEEEEEEECC
T ss_pred             CCCCEECCCCCCCCEEEEEEEcCCCcEEEEEEEEeCCEEEeCEeeccc----cccceeccccccccccccEEEEEEEEEe
Confidence            78999999999999999853   2357899999999999999999853    4578888777666666778899999999


Q ss_pred             CCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccc
Q psy10841        123 HSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHY  200 (286)
Q Consensus       123 hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~  200 (286)
                      ||.|+.....+|||||||++++.|+++++|+||+........+..+.++|||.+...+.....+++..+.+++  .|+..
T Consensus        77 ~~~~~~~~~~~DiAll~L~~~i~~~~~v~~~~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~  156 (227)
T d1fq3a_          77 HPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESD  156 (227)
T ss_dssp             CTTCCTTTTTTCCEEEEESSCCCCCSSCCCCCCCCSSCCCCTTCEEECCCSCCSTTTSCCCSBCCBCEEECCCHHHHTTT
T ss_pred             cccCCCCCCCcchhhhhcccccccceeEEEEeecccccccCCCCEEEEEeeccccCcccccccceEEEEEEEcHHHhhhh
Confidence            9999999999999999999999999999999999877777778889999999887777777788888888887  58765


Q ss_pred             cc---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        201 ED---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       201 ~~---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      +.   .....+|..........|.||+||||++..       +|+||+|++..|+.  .|.+||||++|++||+++|++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~gdsG~pl~~~~-------~l~GI~s~g~~~~~--~p~vyt~v~~y~~WI~~~i~~  226 (227)
T d1fq3a_         157 LRHYYDSTIELCVGDPEIKKTSFKGDSGGPLVCNK-------VAQGIVSYGRNNGM--PPRACTKVSSFVHWIKKTMKR  226 (227)
T ss_dssp             CTTTCCTTTEECCSCTTSSCBCCTTCTTCBCBSSS-------SCCCEECCCCTTSC--SCCCEECHHHHHHHHHHHTTC
T ss_pred             hcccccccceeeeeccccccccccCCCCceEEEeC-------EEEEEEEEcCCCCC--CCcEEEEHHHHHHHHHHHHHh
Confidence            43   234455555556677899999999999743       59999999998874  489999999999999999986

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-45  Score=301.40  Aligned_cols=226  Identities=38%  Similarity=0.723  Sum_probs=185.1

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||+++..++|||+|+|...+.++|+||||+++||||||||+.+.....+  ................+.+.++.+||+
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~~~~C~GtLI~~~~VLTaAhCv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (235)
T d1rfna_           1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITV--VAGEHNIEETEHTEQKRNVIRIIPHHN   78 (235)
T ss_dssp             CBTCEECCTTSSTTEEEEESSSTTCEEEEEEETTEEEECGGGCCTTCCCEE--EESCSBSSSCCSCCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCcCCEEEEecCCCEEEEEEEeeCCEEEEChhhcCCCCceEE--EEeecccccCCCCcceeeeeEEeeccC
Confidence            789999999999999999888788999999999999999999987654433  333333333344556778899999999


Q ss_pred             CCCC--CCCCceEEEEecCccccCCceeeeecCCCCC--CCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccc
Q psy10841        126 FKRA--EMTNDLALLQLAAPLRYNRYVRPICLPDVTE--TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       126 y~~~--~~~~DiAllkL~~~i~~~~~v~picL~~~~~--~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~  199 (286)
                      |+..  ...+|||||||++|+.++..++|+||+....  ....+..+.+.||+...........++++.+.+.+  .|..
T Consensus        79 ~~~~~~~~~~diAllkL~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~c~~  158 (235)
T d1rfna_          79 YNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLR  158 (235)
T ss_dssp             CBTTTBSSTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHHTTSEEEEEESCBSSTTSCBCSBCEEEEEEBCCHHHHHH
T ss_pred             CCCCcCccCceEEEEEeCCCccCCCccceeeeccccccccccccceEEEeccccccccccccCcceEEEEeccccccccc
Confidence            9865  3579999999999999999999999986432  22345678889999887766677788999998888  4765


Q ss_pred             ccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        200 YED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       200 ~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      .+.  ..+..+|+.........|.||+||||++..   +++|+|+||+|++..|+..+.|.+|+||++|++||+++|+-
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~---~~~~~l~Gi~s~g~~~~~~~~p~vyt~v~~~~~WI~~~~~~  234 (235)
T d1rfna_         159 STKFTIYNNMFCAGFHEGGRDSCQGDSGGPHVTEV---EGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKL  234 (235)
T ss_dssp             HCSSCCCTTEEEESCSSCSCBCCTTCTTCEEEEES---SSCEEEEEEEEEESSSSCTTCCEEEEEGGGTHHHHHHHHCC
T ss_pred             ccCceecCCeeEeecCCCCccccCCCCCceeEEec---CCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHhcC
Confidence            443  345677776667778999999999999876   78999999999999998888999999999999999999873

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-44  Score=304.86  Aligned_cols=229  Identities=30%  Similarity=0.635  Sum_probs=173.8

Q ss_pred             ccCCCceecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccC-CCCceEEeee
Q psy10841         40 ILGSGRVVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSF-SPTEQVRPVS  118 (286)
Q Consensus        40 ~~~~~~i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~-~~~~~~~~v~  118 (286)
                      ...+.||+||+++..++|||+|.|.+   ++|+||||+++||||||||+.+....  .+.+|..+.... ....+.+.|.
T Consensus         8 ~~~~~ri~gG~~~~~~~~Pw~v~l~~---~~C~GtLIs~~~VLTaAhCv~~~~~~--~v~~g~~~~~~~~~~~~~~~~v~   82 (259)
T d1elva1           8 FEEKQRIIGGSDADIKNFPWQVFFDN---PWAGGALINEYWVLTAAHVVEGNREP--TMYVGSTSVQTSRLAKSKMLTPE   82 (259)
T ss_dssp             C-----CBTCEECCGGGSTTEEEEET---TEEEEEEEETTEEEECHHHHTTCSSC--CEECSCSBCC-------CEECEE
T ss_pred             CCCCCceECCEECCCCCcceEEEeCC---ceEEEEEEeCCEEEecccccccccce--eEEeeeeeeecccccccccccce
Confidence            33457999999999999999999943   58999999999999999999765543  455555443321 2345778899


Q ss_pred             EEEECCCCCC-------CCCCCceEEEEecCccccCCceeeeecCCCCC--CCCCCCceEEEEecccCCCCCCCccceeE
Q psy10841        119 RIVMHSMFKR-------AEMTNDLALLQLAAPLRYNRYVRPICLPDVTE--TPEPYSTCTAVGWGAVFEHGPDPDHMREV  189 (286)
Q Consensus       119 ~~~~hp~y~~-------~~~~~DiAllkL~~~i~~~~~v~picL~~~~~--~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~  189 (286)
                      ++++||.|..       ....+|||||||++++.|++.++|+|++....  ....+..+.+.||+.+.... ....++..
T Consensus        83 ~i~~hp~~~~~~~~~~~~~~~~DIAllkL~~~~~~~~~v~pic~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~  161 (259)
T d1elva1          83 HVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRD-RAVRLKAA  161 (259)
T ss_dssp             EEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGGGCCCTTCEEEEEESCCCSSCS-SCSBCEEE
T ss_pred             eEeecceeecccccccCCCcccceeeeecccceehhcccCceeeccCccccccccceEEEEeccccccccc-cccccccc
Confidence            9999999953       34678999999999999999999999987543  34566788999999764443 34556777


Q ss_pred             eeeecc--cccccc-----------cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCC
Q psy10841        190 QVPILP--ACKHYE-----------DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNE  256 (286)
Q Consensus       190 ~~~~~~--~c~~~~-----------~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~  256 (286)
                      .+.+.+  .|...+           .....++|+.. ......|.||+||||++...+..++|+|+||+|++..|+   .
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~c~gDsGgPl~~~~~~~~~~~~l~Gi~S~~~~c~---~  237 (259)
T d1elva1         162 RLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGG-EKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCG---T  237 (259)
T ss_dssp             EEEEECHHHHHTC----------CCCCCTTEEEEEC-STTCBCCTTCTTCEEEEECSSCTTCEEEEEEEEECSSTT---S
T ss_pred             eeeEechhhceeeeecccccccccceeecceeeccC-CCCCccCCCCcCCeEEEEecCCCcEEEEEEEEEeCCCCC---C
Confidence            776665  232211           13455677765 456789999999999998877788999999999999885   4


Q ss_pred             CeeEEeCCCcHHHHHhhhcccc
Q psy10841        257 PGVYTRVSQFVPWLMSNSERAK  278 (286)
Q Consensus       257 p~v~t~v~~~~~WI~~~~~~~~  278 (286)
                      |.+||||++|.+||++++++++
T Consensus       238 p~vft~V~~~~~WI~~~i~~~~  259 (259)
T d1elva1         238 YGLYTRVKNYVDWIMKTMQENS  259 (259)
T ss_dssp             EEEEEEGGGGHHHHHHHHHHTC
T ss_pred             ceEEeEHHHHHHHHHHHHHhcC
Confidence            8999999999999999998764

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-45  Score=304.29  Aligned_cols=223  Identities=31%  Similarity=0.622  Sum_probs=180.9

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCC-----ceEEEEEeeeecccCCCCceEEeeeEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK-----HYFEVYAGMLRRFSFSPTEQVRPVSRI  120 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~-----~~~~v~~g~~~~~~~~~~~~~~~v~~~  120 (286)
                      |+||++|..++|||+|.|..+  +.|+||||+++||||||||+.+...     ..+.|++|..+..... ..+.+.|.++
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~~--~~C~GtLIs~~~VLTaAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~-~~~~~~v~~i   77 (240)
T d2qy0b1           1 IIGGQKAKMGNFPWQVFTNIH--GRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELM-KLGNHPIRRV   77 (240)
T ss_dssp             CBSCEECCTTSSTTEEEEESS--SEEEEEEETTTEEEECHHHHSCSSCCC----CCEEEESCSBHHHHH-HHCCCCEEEE
T ss_pred             CCCCEECCCCCcCCEEEECCC--ceEEEEEEcCCEEEEChHhCCCcccccccccceeeeeeeccccccC-CcceEEEEEE
Confidence            789999999999999999654  4699999999999999999976432     3467888876554322 3456789999


Q ss_pred             EECCCCCCCC---CCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--
Q psy10841        121 VMHSMFKRAE---MTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--  195 (286)
Q Consensus       121 ~~hp~y~~~~---~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--  195 (286)
                      ++||+|+...   +.+|||||||++|+.+++.++|||++........+..+.+.|||....  .....++..++.+.+  
T Consensus        78 ~vhp~y~~~~~~~~~~DiAll~L~~pi~~~~~v~pi~l~~~~~~~~~~~~~~~~g~g~~~~--~~~~~~~~~~~~~~~~~  155 (240)
T d2qy0b1          78 SVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEE--KIAHDLRFVRLPVANPQ  155 (240)
T ss_dssp             EECTTCCTTCSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCCCSS--SCCSBCEEEEEEBCCHH
T ss_pred             EeccccccccccccCCCceEEecCCccccccccceEEecccccccccCceeeecccccccc--cccccceEEEEEEcCHH
Confidence            9999998753   568999999999999999999999988666666678899999997643  334556667777776  


Q ss_pred             ccccccc-------CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHH
Q psy10841        196 ACKHYED-------RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVP  268 (286)
Q Consensus       196 ~c~~~~~-------~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~  268 (286)
                      .|+..+.       ..+.++|+.........|.||+|+||++... ..++|+|+||+|++.+|..  .|++||||++|++
T Consensus       156 ~C~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gdsG~pl~~~~~-~~~~~~l~Gi~S~g~~c~~--~p~vft~v~~~~~  232 (240)
T d2qy0b1         156 ACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDP-NTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVD  232 (240)
T ss_dssp             HHHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECT-TTCCEEEEEEEEECSSSSS--SCEEEEEGGGGHH
T ss_pred             HHHHHhhccccCCceecceEEeccCCccceeeccccccceEEEeC-CCCeEEEEEEEEECCCCCC--CCeEEEEHHHHHH
Confidence            5765431       4577899987667788999999999998663 3568999999999999974  4899999999999


Q ss_pred             HHHhhhcc
Q psy10841        269 WLMSNSER  276 (286)
Q Consensus       269 WI~~~~~~  276 (286)
                      ||+++|++
T Consensus       233 WI~~~i~~  240 (240)
T d2qy0b1         233 WIKKEMEE  240 (240)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHhcC
Confidence            99999975

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-44  Score=298.85  Aligned_cols=226  Identities=35%  Similarity=0.672  Sum_probs=173.1

Q ss_pred             CCceecCeeCCCCccceEEEEeeC-CeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEE
Q psy10841         43 SGRVVGGKKAELGAWPWLIALYRD-GFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIV  121 (286)
Q Consensus        43 ~~~i~~g~~a~~~~~Pw~v~i~~~-~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~  121 (286)
                      ++||+||++++.++|||+|+|+.. +.++|+||||+++||||||||+.........+..+........     ....+.+
T Consensus        15 ~~ri~gG~~a~~~~~Pw~v~i~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~   89 (247)
T d1rjxb_          15 PGAVVGGCVAYPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNL-----EPHVQEI   89 (247)
T ss_dssp             CTTSTTCEECCTTSSTTEEEEEETTCCEEEEEEEEETTEEEEEGGGGTTCSCGGGEEEEESCCBSSSC-----CTTCEEE
T ss_pred             CCeEECCEECCCCCCCcEEEEEECCCCEEEEEEEEeCCEEEeeeEEEEeccCCccceeeccccccccc-----cceeeEE
Confidence            368999999999999999999764 4679999999999999999999766554333333322221111     1123344


Q ss_pred             ECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccc
Q psy10841        122 MHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKH  199 (286)
Q Consensus       122 ~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~  199 (286)
                      .|+.|......+||||++|+.++.|++.+.|+||+...........+...||+... .......++...+.+++  .|..
T Consensus        90 ~~~~~~~~~~~~DiAl~~L~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  168 (247)
T d1rjxb_          90 EVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ-GTFGAGLLMEAQLPVIENKVCNR  168 (247)
T ss_dssp             EEEEEEECSSSCCEEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCC-----CCCSBCEEEEEEEECHHHHTS
T ss_pred             eeccccCCCccchhhhhhhhcccccccccccccccccccccCCCceeeeccccccc-CCCCCCcceEEEEEEEchHHhhh
Confidence            45555555567999999999999999999999998866666666778888888653 34455677777777776  2433


Q ss_pred             cc----cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhc
Q psy10841        200 YE----DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       200 ~~----~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~  275 (286)
                      ..    .....++|+.........|.||+||||++..   +++|+|+||+|++..|+..+.|.+|+||++|++||+++|+
T Consensus       169 ~~~~~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~---~~~~~l~Gi~S~~~~c~~~~~p~v~t~v~~~~~WI~~~i~  245 (247)
T d1rjxb_         169 YEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFE---KDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR  245 (247)
T ss_dssp             TTTTTTCSCTTEEEESCSSSCCCBCCSCTTCEEEEEC---SSSEEEEEEECTTSCCBBTTBCEEEEEGGGGHHHHHHHHH
T ss_pred             hhccCcccccceeEEeccCCCcccccCCccceEEEee---CCEEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHh
Confidence            22    2557789998767778899999999999877   6899999999999999887889999999999999999997


Q ss_pred             cc
Q psy10841        276 RA  277 (286)
Q Consensus       276 ~~  277 (286)
                      ++
T Consensus       246 ~~  247 (247)
T d1rjxb_         246 NN  247 (247)
T ss_dssp             HC
T ss_pred             cC
Confidence            63

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.7e-43  Score=291.91  Aligned_cols=225  Identities=36%  Similarity=0.624  Sum_probs=180.5

Q ss_pred             eecCeeCCCCccceEEEEee--CC--eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYR--DG--FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIV  121 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~--~~--~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~  121 (286)
                      |+||++|+.++|||+|.|..  +.  .++|+||||+++||||||||+.+..  ...+.+|...................+
T Consensus         1 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~--~~~v~~g~~~~~~~~~~~~~~~~~~~~   78 (240)
T d1gvkb_           1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDREL--TFRVVVGEHNLNQNNGTEQYVGVQKIV   78 (240)
T ss_dssp             CBTCEECCTTSCTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGGCSCC--CEEEEESCSBTTSCCSCCEEEEEEEEE
T ss_pred             CCCCEECCCCCCCEEEEEEEecCCccceEEEEEEEeCCEEEECcccccccC--CceEEeeeeecccccccccccccccee
Confidence            68999999999999999963  22  3689999999999999999997644  445777777666555444445555555


Q ss_pred             EC--CCCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cc
Q psy10841        122 MH--SMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC  197 (286)
Q Consensus       122 ~h--p~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c  197 (286)
                      +|  +.++.....+|||||||++++.++..++|+||+.............+.||+.+.........++..++.+++  .|
T Consensus        79 ~~~~~~~~~~~~~~diAll~l~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~  158 (240)
T d1gvkb_          79 VHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAIC  158 (240)
T ss_dssp             ECTTCCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCCEEEEESCBSSTTCCBCSBCEEEECCEECHHHH
T ss_pred             EEEeecccccccCcceeeecccCcccccccccceeeccCccccccccceeEeccccccccccccceeeEEEEEEEcHHHh
Confidence            54  455566678999999999999999999999998876666667788889999887766667788888888887  23


Q ss_pred             ccc----ccCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC--CCCCCCCCeeEEeCCCcHHHHH
Q psy10841        198 KHY----EDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWLM  271 (286)
Q Consensus       198 ~~~----~~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~--~c~~~~~p~v~t~v~~~~~WI~  271 (286)
                      ...    ....+.++|+.. ......|.||+|+||++..   +++|+|+||+||+.  +|...+.|++||||++|++||+
T Consensus       159 ~~~~~~~~~~~~~~~c~~~-~~~~~~c~gDsG~pl~~~~---~~~~~lvGI~S~~~~~~c~~~~~p~vyt~v~~~~~WI~  234 (240)
T d1gvkb_         159 SSSSYWGSTVKNSMVCAGG-DGVRSGCQGDSGGPLHCLV---NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWIN  234 (240)
T ss_dssp             TSTTTTGGGCCTTEEEECC-SSSCBCCTTCTTCEEEEEE---TTEEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHH
T ss_pred             cceeccCCccCCceEEecC-CCCCccccCccccceEEEE---CCEEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHH
Confidence            332    235677899976 4566899999999999987   67999999999987  4666678999999999999999


Q ss_pred             hhhcc
Q psy10841        272 SNSER  276 (286)
Q Consensus       272 ~~~~~  276 (286)
                      ++|++
T Consensus       235 ~~i~~  239 (240)
T d1gvkb_         235 NVIAS  239 (240)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99976

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=100.00  E-value=3.8e-43  Score=292.69  Aligned_cols=224  Identities=32%  Similarity=0.620  Sum_probs=186.8

Q ss_pred             eecCeeCCCCccceEEEEeeCC---eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRDG---FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVM  122 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~---~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~  122 (286)
                      |+||++++.+||||+|.|+...   .++|+||||+++||||||||+.......+.+..|..+... ....+.+.|+++++
T Consensus         1 i~gG~~~~~~e~Pw~v~l~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~v~~~~~~~~~-~~~~~~~~v~~~~~   79 (241)
T d1m9ua_           1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGLWQQSD-TSGTQTANVDSYTM   79 (241)
T ss_dssp             CBTCEECCTTSSTTEEEEEEESSSEEEEEEEEECSSSEEEECHHHHTTCCGGGEEEEESCSBTTC-CTTCEEEEEEEEEE
T ss_pred             CCCCEECCCCCCCCEEEEEEeCCCccEEEEEEEEeCCEEEEChhhcccccCceeeEEEEeeeccc-ccccccccceeeee
Confidence            7899999999999999997543   4789999999999999999998877788888888766554 33567889999999


Q ss_pred             CCCCCCCC--CCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccc
Q psy10841        123 HSMFKRAE--MTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACK  198 (286)
Q Consensus       123 hp~y~~~~--~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~  198 (286)
                      ||.|+...  +.+|||||+|++++.+++.++|+|++........+..+.+.||+.....+.....++...+.+.+  +|+
T Consensus        80 h~~~~~~~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~C~  159 (241)
T d1m9ua_          80 HENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCT  159 (241)
T ss_dssp             CTTTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSSCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHH
T ss_pred             eeeeccccccccccceeeeccceeeeeeceeeeeeeccccccccceEEEEeecccccCCCCCCCcceEEEEEeechhHhh
Confidence            99998754  57899999999999999999999999876667778899999999887777777888889998887  587


Q ss_pred             cccc------CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC----CCCCCCCCeeEEeCCCcHH
Q psy10841        199 HYED------RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE----GCARPNEPGVYTRVSQFVP  268 (286)
Q Consensus       199 ~~~~------~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~----~c~~~~~p~v~t~v~~~~~  268 (286)
                      ..+.      .....+|..........|.||+||||++..    ++++|+||+++..    .|+..+.|++||||++|++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sGgpl~~~~----~~~~l~Gi~s~~~~~g~~~~~~~~p~vft~V~~y~~  235 (241)
T d1m9ua_         160 AAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPD----GGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLG  235 (241)
T ss_dssp             HHHTTSTTCCCCTTEEEECCTTSCCBCCTTCTTCEEEEES----SSEEEEEEEEECCBCTTSCBCTTSCEEEEEGGGTHH
T ss_pred             hhhhcccccccccceeEeecccCCcCcccCCCCcceEEec----CCEEEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHH
Confidence            6442      335566776656677899999999999753    4678999998654    4666678999999999999


Q ss_pred             HHHhhh
Q psy10841        269 WLMSNS  274 (286)
Q Consensus       269 WI~~~~  274 (286)
                      ||+++.
T Consensus       236 WI~~n~  241 (241)
T d1m9ua_         236 WIGDNS  241 (241)
T ss_dssp             HHHHHC
T ss_pred             HHHHcc
Confidence            999763

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=100.00  E-value=1e-42  Score=289.45  Aligned_cols=217  Identities=35%  Similarity=0.657  Sum_probs=172.9

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++|+.+||||+|.|+.  .++|+||||+++||||||||+.+..    .+.+................+.++..|+.
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~--~~~C~GtLIs~~~VLTaAhCv~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (235)
T d1tona_           1 IVGGYKCEKNSQPWQVAVIN--EYLCGGVLIDPSWVITAAHCYSNNY----QVLLGRNNLFKDEPFAQRRLVRQSFRHPD   74 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEES--SSEEEEEEEETTEEEECGGGCCSCC----EEEESCSBTTSCCTTCEEECEEEEEECTT
T ss_pred             CCCCEECCCCCCCeEEEEcC--CeEEEEEEecCCEEEECceecCCCC----ceEEeeeeeecCCCceeEeeeeeeeeeee
Confidence            68999999999999999974  4799999999999999999996533    34444444433344556667777777777


Q ss_pred             CCC-----------CCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCC-CCCccceeEeeee
Q psy10841        126 FKR-----------AEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPI  193 (286)
Q Consensus       126 y~~-----------~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~  193 (286)
                      |..           ....+|||||+|.+++.|++.+.|+||+....  .....+.++|||.+.... .....++...+.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~Diall~L~~~v~~~~~i~~i~l~~~~~--~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~  152 (235)
T d1tona_          75 YIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEP--KVGSTCLASGWGSTNPSEMVVSHDLQCVNIHL  152 (235)
T ss_dssp             CCCC--------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSCC--CTTCEEEEEESSCSSSSSCCCCSBCEEEEEEE
T ss_pred             ceeeeeeecccccccccccceeEEEecCccccCCcccccccccccc--cccceeEEEEccccccccccccccceeeeeee
Confidence            743           34568999999999999999999999987443  345788899999875543 3455688888887


Q ss_pred             cc--ccccccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCCCCCCCeeEEeCCCcHH
Q psy10841        194 LP--ACKHYED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVP  268 (286)
Q Consensus       194 ~~--~c~~~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~~~~~p~v~t~v~~~~~  268 (286)
                      ++  +|+..+.  ..+.++|+.........|.||+||||++.       ++|+||+|++. .|+....|.+||||++|++
T Consensus       153 ~~~~~C~~~~~~~~~~~~~c~~~~~~~~~~c~gdsG~Pl~~~-------~~l~Gi~S~g~~~c~~~~~p~vyt~v~~y~~  225 (235)
T d1tona_         153 LSNEKCIETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPLICD-------GVLQGITSGGATPCAKPKTPAIYAKLIKFTS  225 (235)
T ss_dssp             ECGGGCGGGGSTTGGGGEEEEECTTCSCBCCTTCTTCEEEET-------TEEEEEECCCCSSCSCTTCCEEEEEGGGGHH
T ss_pred             eCHHHHHHHhCCCCCCCceEeCcCCCCccccCCCcCCeEEEc-------CEEEEEEEeCCCCCCCCCCCeEEEEHHHHHH
Confidence            76  6887654  44668999876777889999999999973       47999999987 6777678999999999999


Q ss_pred             HHHhhhccc
Q psy10841        269 WLMSNSERA  277 (286)
Q Consensus       269 WI~~~~~~~  277 (286)
                      ||+++|+++
T Consensus       226 WI~~~i~~~  234 (235)
T d1tona_         226 WIKKVMKEN  234 (235)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHC
Confidence            999999864

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=100.00  E-value=4.2e-43  Score=291.83  Aligned_cols=220  Identities=30%  Similarity=0.639  Sum_probs=171.9

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCce-EEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQ-VRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~-~~~v~~~~~hp  124 (286)
                      |+||++|..+||||+|+|+..+.++|+|+||+++||||||||+.+...    +.+............+ .......+.|+
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~~~C~G~LIs~~~VLTaAhCv~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (234)
T d1op0a_           1 VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDSTDFQ----MQLGVHSKKVLNEDEQTRNPKEKFICPN   76 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCCSSCE----EEESCSCSSSCCTTCEEECEEEEEECTT
T ss_pred             CCCCEECCCCCcCcEEEEEECCcEEEEEEEEcCCEEEECceeCCCCCc----cccceeeccccCCcceeeeeeeeccccc
Confidence            789999999999999999998899999999999999999999966442    2222222222122223 33345677889


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCC-CCCCccceeEeeeecc--cccccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEH-GPDPDHMREVQVPILP--ACKHYE  201 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~~~~~--~c~~~~  201 (286)
                      .|+.....+|||||||++|+.|+.+++|+|||...  ...+..+.++||+..... ......++...+.+++  .|...+
T Consensus        77 ~~~~~~~~~DiaLl~L~~~v~~~~~i~picl~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  154 (234)
T d1op0a_          77 KNNNEVLDKDIMLIKLDKPISNSKHIAPLSLPSSP--PSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGY  154 (234)
T ss_dssp             CCTTCTTSSCCEEEEESSCCCCBTTBCCCCCCSSC--CCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHC
T ss_pred             cccccccchhhhhhhcCCceeccceeecccccccC--cccceEEEEeeeccccccccccccccccccceEechHHhcccc
Confidence            99999999999999999999999999999999743  445789999999876543 3345667888887777  576544


Q ss_pred             c---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCCCCCCCeeEEeCCCcHHHHHhhhccc
Q psy10841        202 D---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       202 ~---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~~~~~p~v~t~v~~~~~WI~~~~~~~  277 (286)
                      .   .....+|..........|.||+|+||++.       ++|+||+|++. .|+....|++|+||+.|++||+++|+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~g~~G~Pl~~~-------~~l~Gi~S~g~~~c~~~~~p~vft~v~~y~~WI~~~i~~~  227 (234)
T d1op0a_         155 PELLAEYRTLCAGIVQGGKDTCGGDSGGPLICN-------GQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAGN  227 (234)
T ss_dssp             TTCCTTSCEEEEECTTCCCBCCTTCTTCEEEET-------TEEEEEEEECCSSTTCTTSCEEEEESGGGHHHHHHHHHTC
T ss_pred             cCcceeeeeeeecccccccccccCCCCceEEEc-------CEEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHHhhc
Confidence            3   33445555555667889999999999974       36999999986 6877788999999999999999999765


Q ss_pred             c
Q psy10841        278 K  278 (286)
Q Consensus       278 ~  278 (286)
                      .
T Consensus       228 ~  228 (234)
T d1op0a_         228 T  228 (234)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=100.00  E-value=1.2e-42  Score=288.83  Aligned_cols=222  Identities=35%  Similarity=0.705  Sum_probs=179.5

Q ss_pred             eecCeeCCCCccceEEEEeeC--C--eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYRD--G--FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIV  121 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~--~--~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~  121 (286)
                      |+||++|+.++|||+|+|+..  +  .++|+||||+++||||||||+....  ...+.++...............+..+.
T Consensus         1 iigG~~~~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~   78 (236)
T d1elta_           1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSAR--TWRVVLGEHNLNTNEGKEQIMTVNSVF   78 (236)
T ss_dssp             CBSSEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECHHHHSSCC--CEEEEESCSBTTSCCSCCEEECEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEEccCCcceeEEEEEEEeCCEEEECeeeccccc--cceeeccceeeecccCCceeeeeeEEE
Confidence            689999999999999999632  2  4689999999999999999997644  445677766555555566778888889


Q ss_pred             ECCCCCCCCC--CCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cc
Q psy10841        122 MHSMFKRAEM--TNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC  197 (286)
Q Consensus       122 ~hp~y~~~~~--~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c  197 (286)
                      +||.|+....  .+|||||||++++.++..++|||||...........+++.|||...........++...+.+++  +|
T Consensus        79 ~~~~~~~~~~~~~~diall~l~~~~~~~~~~~picL~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  158 (236)
T d1elta_          79 IHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATC  158 (236)
T ss_dssp             ECTTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCCEEEEESCCSSTTCCCCSBCEEEECCEECHHHH
T ss_pred             EeeeecccccccCceEEEeeccCcceeecccceeecCchhcccCCCceEEEecccccccCcccCccceeeeeEEEcHHHh
Confidence            9999887753  6799999999999999999999999876666677889999999887776777778888888876  34


Q ss_pred             cccc---c-CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC--CCCCCCCCeeEEeCCCcHHHHH
Q psy10841        198 KHYE---D-RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWLM  271 (286)
Q Consensus       198 ~~~~---~-~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~--~c~~~~~p~v~t~v~~~~~WI~  271 (286)
                      ....   . .....+|..  ......|.||+||||++..   +++|+|+||+|++.  .|+..+.|++||||++|++||+
T Consensus       159 ~~~~~~~~~~~~~~~~~~--~~~~~~c~gdsGgpl~~~~---~~~~~l~GI~s~~~~~~c~~~~~p~vyt~v~~y~~WI~  233 (236)
T d1elta_         159 SSSGWWGSTVKTTMVCAG--GGANSGCNGDSGGPLNCQV---NGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMN  233 (236)
T ss_dssp             TSTTTTGGGSCTTEEEEC--CSSCBCCTTCTTCEEEEEE---TTEEEEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHH
T ss_pred             hhhcccccccceeeeecC--CccccccccccccceEEEE---CCeEEEEEEEEEeCCCCCCCCCCCEEEEEHHHHHHHHH
Confidence            3322   1 233344443  3456789999999999987   67999999999865  6877788999999999999999


Q ss_pred             hhh
Q psy10841        272 SNS  274 (286)
Q Consensus       272 ~~~  274 (286)
                      +++
T Consensus       234 ~vi  236 (236)
T d1elta_         234 GIM  236 (236)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            875

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=2.2e-42  Score=287.59  Aligned_cols=220  Identities=31%  Similarity=0.582  Sum_probs=174.6

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      |+||++++.+||||+|.|+.++.++|+||||+++||||||||+.+..    ................+...+...+.|+.
T Consensus         1 i~gG~~~~~~e~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (237)
T d1gvza_           1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMSDDY----QIWLGRHNLSKDEDTAQFHQVSDSFLDPQ   76 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCCSSC----EEEESCSBTTSCCTTCEEECEEEEEECTT
T ss_pred             CCCCEECCCCCCCcEEEEEECCeEEEEEEEEeCCEEEeChhhccCCC----ceeEeeeeeccccCcceeeeeeeEEeeee
Confidence            68999999999999999999999999999999999999999997644    22333333333344566777888888888


Q ss_pred             CCC-----------CCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCC-CCCccceeEeeee
Q psy10841        126 FKR-----------AEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHG-PDPDHMREVQVPI  193 (286)
Q Consensus       126 y~~-----------~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~-~~~~~l~~~~~~~  193 (286)
                      |+.           ....+|||||||++|+.|++.++|+|||..  ....+..+.+.|||...... .....++...+.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~Diali~L~~pv~~~~~v~p~~l~~~--~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~  154 (237)
T d1gvza_          77 FDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQ--EPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRL  154 (237)
T ss_dssp             SCGGGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSS--CCCTTCEEEEEEEECSCTTTCSEEEEEEEEEEEE
T ss_pred             eeeeeeecccccCccccccceEEEEECCceeccccccccccccc--ccccceeEEEEeeeeeccccccccceeeEEEEEe
Confidence            753           224689999999999999999999999974  34456788999999764432 3345677878877


Q ss_pred             cc--ccccccc--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCCCCCCCeeEEeCCCcHH
Q psy10841        194 LP--ACKHYED--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVP  268 (286)
Q Consensus       194 ~~--~c~~~~~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~~~~~p~v~t~v~~~~~  268 (286)
                      .+  .|...+.  ..+..+|..........|.||+||||++..       +|+||+|++. .|+..+.|.+||||++|++
T Consensus       155 ~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~gdsG~pl~~~~-------~l~Gv~s~g~~~c~~~~~p~v~t~v~~y~~  227 (237)
T d1gvza_         155 QSNEKCARAYPEKMTEFVLCATHRDDSGSICLGDSGGALICDG-------VFQGITSWGYSECADFNDNFVFTKVMPHKK  227 (237)
T ss_dssp             ECGGGGCSSCGGGCCTTEEEEECSSTTCEECGGGTTCEEEETT-------EEEEEECCCSSSCEETTTSCCEEESGGGHH
T ss_pred             ecHHHHHhhcccccccccccceecccccccccCCCCCcEEEcC-------EEEEEEEeccCCCCCCCCCeEEEEHHHHHH
Confidence            77  5876543  455677777666778899999999999743       7999999987 5766678999999999999


Q ss_pred             HHHhhhcccc
Q psy10841        269 WLMSNSERAK  278 (286)
Q Consensus       269 WI~~~~~~~~  278 (286)
                      ||+++|++++
T Consensus       228 WI~~~i~~~~  237 (237)
T d1gvza_         228 WIKETIEKNS  237 (237)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            9999998753

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-42  Score=287.82  Aligned_cols=215  Identities=31%  Similarity=0.692  Sum_probs=171.8

Q ss_pred             ccceEEEEee--CC--eEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCC--CCceEEeeeEEEECCCCCCC
Q psy10841         56 AWPWLIALYR--DG--FFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFS--PTEQVRPVSRIVMHSMFKRA  129 (286)
Q Consensus        56 ~~Pw~v~i~~--~~--~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~--~~~~~~~v~~~~~hp~y~~~  129 (286)
                      .|||+|+|+.  ++  .++|+||||+++||||||||+.+..  ...+.+|........  ...+.+.|.++++||+|+..
T Consensus         1 ~~PW~v~l~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~--~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~hp~~~~~   78 (232)
T d1fona_           1 SWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSR--TYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSN   78 (232)
T ss_dssp             CEEEEEEEEEEETTEEEEEECCEEEETTEEEECGGGCCTTS--CEEEEEEEEETTEEEEEEEEEEECTTSEEECTTCCTT
T ss_pred             CCccEEEEEEeCCCceEEEEEEEEecCCEEEEChhhccCCC--ceEEEEEeccccccccccccccceeEEEEEccCcccc
Confidence            4999999964  33  3589999999999999999997654  445566655433222  23345678899999999876


Q ss_pred             C--CCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cccccc----
Q psy10841        130 E--MTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYE----  201 (286)
Q Consensus       130 ~--~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~----  201 (286)
                      .  ..+|||||+|++++.|++.++|||++........+..+.+.||+.....+.....++...+.+++  .|.+..    
T Consensus        79 ~~~~~~diAll~l~~~~~~~~~~~pic~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (232)
T d1fona_          79 CVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGI  158 (232)
T ss_dssp             CGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTCCCCTTCCCEEEECTTCCCSSSCCSBCEEEECCEECHHHHTSTTTTGG
T ss_pred             ccccccceeeeecccceEEeecceeeecCcccccCCCCceeEeeccccccCCCCCCCcceEEEEEEEcHHHhhhhhccCc
Confidence            5  45999999999999999999999999877667777889999999887777777889999998887  454422    


Q ss_pred             cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC--CCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        202 DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE--GCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       202 ~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~--~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      .....++|+.  ......|.||+||||++...  +++|+|+||+|++.  .|+..+.|++|+||++|++||+++|++
T Consensus       159 ~~~~~~~c~~--~~~~~~~~gdsGgpl~~~~~--~~~~~L~Gi~s~~~~~~c~~~~~p~vyt~V~~y~~WI~~~i~~  231 (232)
T d1fona_         159 TVKKTMVCAG--GDTRSGCNGDSGGPLNCPAA--DGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIAS  231 (232)
T ss_dssp             GCCTTEEEEC--CSSSCSTTSCTTCEEEEECS--SSCEEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHHHHHHH
T ss_pred             eeeeceeeec--cccccccccCCCCceEEEcc--CCCEEEEEEEEEcCCCCCCCCCCCEEEEEHHHHHHHHHHHHHc
Confidence            2456678876  44567899999999998664  67899999999876  476667899999999999999999976

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=100.00  E-value=1.8e-42  Score=286.31  Aligned_cols=215  Identities=35%  Similarity=0.600  Sum_probs=167.9

Q ss_pred             eecCeeCCCCccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCC-CceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         46 VVGGKKAELGAWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFE-KHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~-~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      |+||+.++.++|||+|+|.    +.|+||||+++||||||||+.+.. ...+.|.+|..+...    ...+.++.+.+||
T Consensus         1 ~~gG~~~~~~~~Pw~v~l~----~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~v~~g~~~~~~----~~~~~i~~~~i~~   72 (223)
T d1os8a_           1 VVGGTRAAQGEFPFMVRLS----MGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQS----SSAVKVRSTKVLQ   72 (223)
T ss_dssp             CBSCEECCTTSSTTEEEET----TTEEEEEEETTEEEECGGGSSCSEECCCCEEEESCSBTTC----TTCEEEEEEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEe----ccEeEEEEeCCEEEEChhhccCCCCcceeeeccccccccc----cccccceeeeeee
Confidence            6899999999999999994    459999999999999999997653 356677777665432    3344566677777


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecc--ccccccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--ACKHYED  202 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c~~~~~  202 (286)
                      +|+.....+|||||||++++.+.     +|++.. .....+..+.+.||+...........++...+..++  .|+..+.
T Consensus        73 ~~~~~~~~~DIAllkL~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  146 (223)
T d1os8a_          73 APGYNGTGKDWALIKLAQPINQP-----TLKIAT-TTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYG  146 (223)
T ss_dssp             CTTCSSSSCCCEEEEESSCCCSC-----CCEECC-SSTTSSSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHHHHG
T ss_pred             cccccccceeeeeeeeeeeeecc-----cccccc-cccccccceEEeeccccccccccccccccceeeEeCHHHhhhhhc
Confidence            77777788999999999998754     344321 223456789999999887777777888888888887  5765443


Q ss_pred             ---CCCCEEEEee-CCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        203 ---RIADVICAGM-PQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       203 ---~~~~~~C~~~-~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                         ....++|... .....+.|.+|+|+||++...  .++|+|+||+|++..|+..+.|++|+||++|++||+++++.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~c~~~~G~pl~~~~~--~~~~~L~Gi~s~~~~c~~~~~p~vft~V~~y~~WI~~~~k~  222 (223)
T d1os8a_         147 NELVANEEICAGYPDTGGVDTCQGDSGGPMFRKDN--ADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAART  222 (223)
T ss_dssp             GGSCTTTEEEESCTTTCCCBCCTTCTTCEEEEECT--TSCEEEEEEEEECSSSSCTTCCEEEEEHHHHHHHHHHHHHT
T ss_pred             CCCccCcceeeeccccCCcCccccccccceEEecC--CCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHhh
Confidence               2344455443 344567899999999998653  68999999999999998878899999999999999999864

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=100.00  E-value=4.1e-42  Score=285.06  Aligned_cols=217  Identities=29%  Similarity=0.545  Sum_probs=169.4

Q ss_pred             eecCeeCCCCccceEEEEee----CCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEE
Q psy10841         46 VVGGKKAELGAWPWLIALYR----DGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIV  121 (286)
Q Consensus        46 i~~g~~a~~~~~Pw~v~i~~----~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~  121 (286)
                      |+||++|..+||||+|.|+.    +..++|+||||+++||||||||+..  .....+.+|..+.   ....+.+.|++++
T Consensus         1 i~~G~~a~~ge~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhC~~~--~~~~~v~~~~~~~---~~~~~~~~v~~i~   75 (230)
T d2hlca_           1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHD--AVSVVVYLGSAVQ---YEGEAVVNSERII   75 (230)
T ss_dssp             CBTCEECCTTTSTTEEEEEEEETTSCEEEEEEEEEETTEEEECHHHHTT--EEEEEEEESCSBT---TCCSEEEECSEEE
T ss_pred             CCCCEECCCCCCCCEEEEEEEecCCCeeEEEEEEEeCCEEEEeeecccc--cccceeeccccee---cccccceeeEeEE
Confidence            68999999999999999963    4568899999999999999999964  3456677775543   3367889999999


Q ss_pred             ECCCCCCCCCCCceEEEEecCccccCCceeeeecCCCCC--CCCCCCceEEEEecccCCCCCCCccceeEeeeecc--cc
Q psy10841        122 MHSMFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTE--TPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILP--AC  197 (286)
Q Consensus       122 ~hp~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~--~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~--~c  197 (286)
                      +||+|+.....+|||||+|+++ .+.+.++||||+....  ....+..+.+.|||..   +.....++...+...+  .|
T Consensus        76 ~hp~y~~~~~~~DiALl~L~~~-~~~~~v~pi~l~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~c  151 (230)
T d2hlca_          76 SHSMFNPDTYLNDVALIKIPHV-EYTDNIQPIRLPSGEELNNKFENIWATVSGWGQS---NTDTVILQYTYNLVIDNDRC  151 (230)
T ss_dssp             ECTTCBTTTTBTCCEEEECSCC-CCCSSCCCCBCCCGGGGGCCCTTCEEEEEESSCC---SSCCCBCEEEEEEEECHHHH
T ss_pred             eeecccccccccceeEEEeecc-cccccceeEEeeccccccccccceeEEEEeeccc---cccchhhheeeeccccchhh
Confidence            9999999999999999999875 5788899999987543  2334566777788754   2333456666666665  46


Q ss_pred             ccccc---CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCC-CCCCCCCeeEEeCCCcHHHHHhh
Q psy10841        198 KHYED---RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEG-CARPNEPGVYTRVSQFVPWLMSN  273 (286)
Q Consensus       198 ~~~~~---~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~-c~~~~~p~v~t~v~~~~~WI~~~  273 (286)
                      .....   ....++|... ......|.||+||||++     +++|+|+||+|++.. |+..+.|.+||||++|++||+++
T Consensus       152 ~~~~~~~~~~~~~~~~~~-~~~~~~~~gdsGgp~~~-----~~~~~l~Gi~S~~~~~~~~~~~p~vyt~V~~y~~WI~~~  225 (230)
T d2hlca_         152 AQEYPPGIIVESTICGDT-SDGKSPCFGDSGGPFVL-----SDKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQN  225 (230)
T ss_dssp             HTTSCTTSSCTTEEEECC-TTSCBCCTTCTTCEEEE-----GGGTEEEEEEEECCTTCTTSCCCEEEEEGGGGHHHHHHH
T ss_pred             hhccccccccccceEecc-ccCccccccccCCCeEE-----CCCeEEEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHH
Confidence            54432   3455677754 55678899999999997     346799999999874 34557899999999999999999


Q ss_pred             hccc
Q psy10841        274 SERA  277 (286)
Q Consensus       274 ~~~~  277 (286)
                      |+-+
T Consensus       226 ~~~~  229 (230)
T d2hlca_         226 TGIK  229 (230)
T ss_dssp             HCCC
T ss_pred             hCCC
Confidence            8754

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-42  Score=293.49  Aligned_cols=219  Identities=27%  Similarity=0.499  Sum_probs=152.8

Q ss_pred             eeCCCCccceEEEEee----CCeEEeEEEEeeCCEEEeccCCcCCCCC-ceEEEEEeeeecccCCCCceEEeeeEEEECC
Q psy10841         50 KKAELGAWPWLIALYR----DGFFHCGGVVLDESWVMTAAHCVDGFEK-HYFEVYAGMLRRFSFSPTEQVRPVSRIVMHS  124 (286)
Q Consensus        50 ~~a~~~~~Pw~v~i~~----~~~~~C~GtLIs~~~VLTaAhC~~~~~~-~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp  124 (286)
                      +.+..++|||+|.|..    ...++|+||||+++||||||||+..... ..+.|.+|.        ..+.+.|+++++||
T Consensus         9 ~~t~~~e~PW~v~i~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~v~~g~--------~~~~~~v~~i~~Hp   80 (287)
T d1rrka1           9 KGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGG--------EKRDLEIEVVLFHP   80 (287)
T ss_dssp             TCCHHHHSTTEEEEEECC--CCCEEEEEEECSSSEEEECGGGCCTTCCGGGEEEEETT--------CSSCEEEEEEEECT
T ss_pred             CCCCcCCCCCEEEEEEEECCCCcEEEEEEEecCCEEEEChhheecCCCcceEEEEeCC--------eeceeeeEEEEecC
Confidence            3455689999999964    2357899999999999999999965433 467787773        34557899999999


Q ss_pred             CCCCC---------CCCCceEEEEecCccccCCceeeeecCCCCCC-----CCCCCceEEEEecccCCC-------CCCC
Q psy10841        125 MFKRA---------EMTNDLALLQLAAPLRYNRYVRPICLPDVTET-----PEPYSTCTAVGWGAVFEH-------GPDP  183 (286)
Q Consensus       125 ~y~~~---------~~~~DiAllkL~~~i~~~~~v~picL~~~~~~-----~~~~~~~~~~Gwg~~~~~-------~~~~  183 (286)
                      +|+..         .+.+|||||||++|+.|+++++|||||.....     ......+...+|+.....       ....
T Consensus        81 ~y~~~~~~~~~~~~~~~~DIALl~L~~~~~~s~~v~PIcLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (287)
T d1rrka1          81 NYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEE  160 (287)
T ss_dssp             TCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESS
T ss_pred             CccccccccccCCCcccccEEEEecccCccccceEEEEecCCccccccccccCCcceEeecCceeecCCCccccccccCC
Confidence            99743         35689999999999999999999999864321     111111111122211100       1123


Q ss_pred             ccceeEeeeecc--c---cccc--------------ccCCCCEEEEeeC--CCCCCCCCCCCCCeeeeecCCCCCcEEEE
Q psy10841        184 DHMREVQVPILP--A---CKHY--------------EDRIADVICAGMP--QGGRDTCQGDSGGPLLCPVPGSQGRWYVA  242 (286)
Q Consensus       184 ~~l~~~~~~~~~--~---c~~~--------------~~~~~~~~C~~~~--~~~~~~c~gdsGgPL~~~~~~~~~~~~lv  242 (286)
                      ..++...+.+.+  .   |...              ....+.+||++..  ....+.|.|||||||++..   +++|+|+
T Consensus       161 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~~~C~GDSGgPL~~~~---~~~~~lv  237 (287)
T d1rrka1         161 KKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK---RSRFIQV  237 (287)
T ss_dssp             SCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEE---TTEEEEE
T ss_pred             ceeEEEEEEEeccchhhhhhhhhhccccccccccccccccCCceEecccCCCcCCCCCCCCccCCeEEec---CCeEEEE
Confidence            344444554443  1   2211              1245789999743  2345679999999999876   7889999


Q ss_pred             EEEEecCC--CC--------CCCCCeeEEeCCCcHHHHHhhhccccc
Q psy10841        243 GVVSHGEG--CA--------RPNEPGVYTRVSQFVPWLMSNSERAKV  279 (286)
Q Consensus       243 GI~s~~~~--c~--------~~~~p~v~t~v~~~~~WI~~~~~~~~~  279 (286)
                      ||+|||..  |.        ....|.+||||+.|++||+++|+++.+
T Consensus       238 GI~S~G~~~~~~~~~~~~~~~~~~~~vyt~V~~y~~WI~~~i~~~~~  284 (287)
T d1rrka1         238 GVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDEDL  284 (287)
T ss_dssp             EEEEEESCCCC--------CCTTCEEEEEEGGGGHHHHHHHTTTSSC
T ss_pred             EEEEecCCcCcCCCCCCCcCCCCCCcEEEEHHHHHHHHHHHhcCCCC
Confidence            99999752  32        224578999999999999999998765

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-40  Score=275.85  Aligned_cols=208  Identities=38%  Similarity=0.738  Sum_probs=150.6

Q ss_pred             ccceEEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeE-----------EEECC
Q psy10841         56 AWPWLIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSR-----------IVMHS  124 (286)
Q Consensus        56 ~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~-----------~~~hp  124 (286)
                      .+||+|+|+.++.++|+||||+++||||||||+.+..    .+.+|...........+...+..           +..||
T Consensus         2 ~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (228)
T d1sgfa_           2 SQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKY----QVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHT   77 (228)
T ss_dssp             CCTTEEEEECTTSCCEEEEECSSSEEEECGGGCCSCC----EEEECC----C-CTTCEEEEEEEEEECTTSCGGGC----
T ss_pred             CCCcEEEEEECCcEEEEEEEEcCCEEEeCHHHccCCc----eEEEeeeeeccccccceeeeeeeeccccceeeeeecccC
Confidence            5799999998888999999999999999999996532    46666655444333333333333           45889


Q ss_pred             CCCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCC-CCCCccceeEeeeecc--cccccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEH-GPDPDHMREVQVPILP--ACKHYE  201 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~-~~~~~~l~~~~~~~~~--~c~~~~  201 (286)
                      .|+.....+|||||+|++++.|+++++|||||...  ......+.++||+.+... +.....++...+.+.+  .|+...
T Consensus        78 ~~~~~~~~~Diall~L~~~v~~~~~v~pi~l~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~  155 (228)
T d1sgfa_          78 PQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEE--PKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAH  155 (228)
T ss_dssp             CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCCSC--CCTTCEEEEC-------C---------CEEEEEECTHHHHTTC
T ss_pred             CCCccccccceeEEeeccccccCCceeeEecCccc--cccCcceEEEeeeeccCCccCCCCccEEEEEEEeCHHHhhhhc
Confidence            99999999999999999999999999999999854  344578899999876443 3445678888888887  586654


Q ss_pred             c--CCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCCCCCCCeeEEeCCCcHHHHHhhhcc
Q psy10841        202 D--RIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCARPNEPGVYTRVSQFVPWLMSNSER  276 (286)
Q Consensus       202 ~--~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~~~~~p~v~t~v~~~~~WI~~~~~~  276 (286)
                      .  ..+..+|+.........|.+|+|+||++..       +|+||+|++. .|+..+.|++||||++|++||+++|++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~d~G~pl~~~~-------~l~Gv~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~i~~  226 (228)
T d1sgfa_         156 EMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDG-------ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMAN  226 (228)
T ss_dssp             SSBCCTTEEEEEECSSSEEECCCCTTCEEEETT-------EEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHHHHS
T ss_pred             cCCcccceEEeccCCCCccccCCCcCCcEEEeC-------EEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHHHHHhH
Confidence            4  446678887766677899999999999743       7999999987 687778899999999999999999975

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=99.93  E-value=2e-28  Score=199.77  Aligned_cols=194  Identities=16%  Similarity=0.194  Sum_probs=127.1

Q ss_pred             CCccceEEEEe-eCCeEEeEEEEeeCCEEEeccCCcCCCCCc----eEEEEEeeeecccCCCCceEEeeeEEEECCCCCC
Q psy10841         54 LGAWPWLIALY-RDGFFHCGGVVLDESWVMTAAHCVDGFEKH----YFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKR  128 (286)
Q Consensus        54 ~~~~Pw~v~i~-~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~----~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~  128 (286)
                      ...+||.+.++ ..+...|+|+||+++||||||||+.+....    .+.+..+.....   .......+.+++.||.|..
T Consensus        14 ~~~~P~~~~~~i~~~~~~CsG~LI~~~~VLTaaHCv~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   90 (215)
T d1p3ca_          14 TRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDST---AVNGSANMTEFYVPSGYIN   90 (215)
T ss_dssp             TTSTTGGGEEEEECSSCEEEEEEEETTEEEECHHHHEETTTTEECCCCEEEETCBTTB---CTTCCEEEEEEECCHHHHH
T ss_pred             CCCCCcEEEEEEEcCCeEEEEEEEeCCEEEECcceeccCCCCceeeeEEEeccccCCC---CCceeEEEeEEEEeccccc
Confidence            45689964443 334567999999999999999999665442    344555543322   2345677889999998864


Q ss_pred             -CCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccccCCCCE
Q psy10841        129 -AEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADV  207 (286)
Q Consensus       129 -~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~  207 (286)
                       ....+|+|||||+.++.+.  ..+++++.  .....++.+.++||+......................       ... 
T Consensus        91 ~~~~~~DiAll~l~~~~~~~--~~~~~~~~--~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-  158 (215)
T d1p3ca_          91 TGASQYDFAVIKTDTNIGNT--VGYRSIRQ--VTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTRE-------DTN-  158 (215)
T ss_dssp             HCCGGGCCEEEEESSCHHHH--HCCCCBCC--CSCCTTCEEEEEECCHHHHHHHSSCCCEEEEEECCEE-------CSS-
T ss_pred             CCCccceEEEEEeccCCCcc--cccccccc--ccccCCceeEEEcCCCCcCCCcccceeeEeeeccccc-------ccc-
Confidence             3457899999999887643  44556654  3455678999999986532211112222222211111       011 


Q ss_pred             EEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCC-CCCeeEEeCCCcHHHHHh
Q psy10841        208 ICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARP-NEPGVYTRVSQFVPWLMS  272 (286)
Q Consensus       208 ~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~-~~p~v~t~v~~~~~WI~~  272 (286)
                      .+.    .....|.|||||||+      +.+++|+||.+++..|... ..|.+|++|.+|++||++
T Consensus       159 ~~~----~~~~~~~G~SGgPl~------~~~~~lvGi~s~g~~~~~~~~~~~i~~~v~~~i~wi~~  214 (215)
T d1p3ca_         159 LAY----YTIDTFSGNSGSAML------DQNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             EEE----ECCCCCTTCTTCEEE------CTTSCEEEECCEEEGGGTEEEEEBCCHHHHHHHHHHHT
T ss_pred             cce----eecccCCCCccCeEE------CCCCEEEEEEEeccCCCCCCCCeEEEeEHHHHHHHHHc
Confidence            111    134689999999999      3345799999998766432 237789999999999986

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=99.92  E-value=2.2e-27  Score=199.96  Aligned_cols=199  Identities=17%  Similarity=0.156  Sum_probs=112.3

Q ss_pred             eEEEEeeCCeEEeEEEEee------CCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCC
Q psy10841         59 WLIALYRDGFFHCGGVVLD------ESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMT  132 (286)
Q Consensus        59 w~v~i~~~~~~~C~GtLIs------~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~  132 (286)
                      .++.+..++.++|+||||+      ++||||||||+.+.......+.++......   ......+.+..+|+.|+.....
T Consensus        24 ~v~~~~~~g~~~CGGsLI~~~~~~~~~~VLTAAHCv~~~~~~~~~v~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  100 (263)
T d1arba_          24 AVGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNS---TCRAPNTPASGANGDGSMSQTQ  100 (263)
T ss_dssp             GEEEEEETTEEEEEEEEBCCTTCCCCCEEEEEGGGSCCSHHHHHTCEEEESCCCS---SCCCTTSGGGGSCCCCCCCCEE
T ss_pred             EEEEEecCCcEEEEEEEECCCCCCccceEEEchhhCCCCCCcceEEEEEEEeecc---cceeeeeeeeecccCccceeee
Confidence            5677888889999999998      679999999997765444445555433322   1222234445567777666555


Q ss_pred             CceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCC-------ccceeEeeeecccccc--cccC
Q psy10841        133 NDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDP-------DHMREVQVPILPACKH--YEDR  203 (286)
Q Consensus       133 ~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~-------~~l~~~~~~~~~~c~~--~~~~  203 (286)
                      +|++++++..+..+    ..+.|+.   .......+...+|+.........       ..+..........|..  ....
T Consensus       101 ~~~~l~~~~~~~Di----all~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (263)
T d1arba_         101 SGSTVKATYATSDF----TLLELNN---AANPAFNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGA  173 (263)
T ss_dssp             ECEEEEEEETTTTE----EEEEESS---CCCGGGCCEEBCEECCSCCCSCEEEEECGGGCSCEEEEECSCCEEECTTSSS
T ss_pred             cchheeecCCCcce----eeeeccc---ccccccceeeeccCccccCCccccceeccccceeeeecccccchhhccCCCC
Confidence            55555555443321    1111211   11111223344444332211111       1111111111111111  1224


Q ss_pred             CCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC-CCC--CCCCCeeEEeCCCcHHHHHhh
Q psy10841        204 IADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE-GCA--RPNEPGVYTRVSQFVPWLMSN  273 (286)
Q Consensus       204 ~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~-~c~--~~~~p~v~t~v~~~~~WI~~~  273 (286)
                      ...++|+.........|.|||||||++..    +  .++|+++++. .|.  ..++|++|+||++|..||...
T Consensus       174 ~~~~~c~~~~~~~~~~c~GDSGGPL~~~~----g--~~vGvvsgg~s~c~~c~~~~p~vYtrV~~~~~~~~~~  240 (263)
T d1arba_         174 GTTHLNVQWQPSGGVTEPGSSGSPIYSPE----K--RVLGQLHGGPSSCSATGTNRSDQYGRVFTSWTGGGAA  240 (263)
T ss_dssp             CSSEEEEECCTTSCCCCTTCTTCEEECTT----S--CEEEEEEECSCCTTCCGGGSEEEEEEHHHHHHTTSSG
T ss_pred             CccEEEEEecCCCccccCCCCcceEEecC----C--CEEEEEEEEEeCCcCCCCCCCceEEEEEEeeccCCcc
Confidence            56789998766777899999999999532    1  3899999885 332  236799999999886666443

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.76  E-value=4.4e-19  Score=146.77  Aligned_cols=196  Identities=12%  Similarity=0.090  Sum_probs=113.5

Q ss_pred             eCCCCccceE--EEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCC----CCceEEeeeEEEECC
Q psy10841         51 KAELGAWPWL--IALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFS----PTEQVRPVSRIVMHS  124 (286)
Q Consensus        51 ~a~~~~~Pw~--v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~----~~~~~~~v~~~~~hp  124 (286)
                      .....++||.  ++|...+..+|+|+||++++|||+|||+.........+.++........    .....+.+..+..+|
T Consensus        35 ~~~~~~~p~~~v~~i~~~g~~~gTG~lI~~~~ILTa~Hvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (242)
T d1agja_          35 EKDRQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEP  114 (242)
T ss_dssp             TTGGGSTTGGGEEEEEETTTEEEEEEECSSSEEEECHHHHGGGTTCGGGEEEEETCEECTTSCEECTTCCEEEEEEESCT
T ss_pred             ccccccCCcccEEEEEeCCCccEEEEEEeCCEEEEcccEeccCCCceEEEEEeecceecccceeeeccceEEEEEEeeec
Confidence            3444567776  6777778889999999999999999999654433222333221111111    111234455554443


Q ss_pred             CCCCCCCCCceEEEEecCccc---cCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccc
Q psy10841        125 MFKRAEMTNDLALLQLAAPLR---YNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE  201 (286)
Q Consensus       125 ~y~~~~~~~DiAllkL~~~i~---~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~  201 (286)
                      .    ...+|+|||+|+.+..   +...+.|+.|.... ....++.++++||.....    ..........+...     
T Consensus       115 ~----~~~~D~All~l~~~~~~~~~~~~~~~~~l~~s~-~~~~G~~v~~~GyP~~~~----~~~~~~~~~~~~~~-----  180 (242)
T d1agja_         115 F----GAGVDLALIRLKPDQNGVSLGDKISPAKIGTSN-DLKDGDKLELIGYPFDHK----VNQMHRSEIELTTL-----  180 (242)
T ss_dssp             T----CTTSCCEEEEECCCTTSCCHHHHSCCCEECCST-TCCTTCEEEEEECCTTTS----TTCCEEEEEEECCG-----
T ss_pred             C----CCcCcEEEEEeccccccccccccCcceeecccc-cccCCcEEEEEEcCCCCc----cceeEecccccccc-----
Confidence            2    2357999999976543   33457888887643 456788999999964311    11122222211111     


Q ss_pred             cCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCC-eeEEeCCCcHHHHHhhhccc
Q psy10841        202 DRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEP-GVYTRVSQFVPWLMSNSERA  277 (286)
Q Consensus       202 ~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p-~v~t~v~~~~~WI~~~~~~~  277 (286)
                         ...++..     ..++.|+|||||+-      ....||||.+.+..+...... ...+.   ..+||++++++.
T Consensus       181 ---~~~~~~~-----~~~~~G~SGgPl~~------~~g~vVGI~~~~~~~~~~~~~~~~av~---i~~~i~~~i~~~  240 (242)
T d1agja_         181 ---SRGLRYY-----GFTVPGNSGSGIFN------SNGELVGIHSSKVSHLDREHQINYGVG---IGNYVKRIINEK  240 (242)
T ss_dssp             ---GGSEEEE-----CCCCGGGTTCEEEC------TTSEEEEEEEEEEECSSTTCEEEEEEE---CCHHHHHHHHHH
T ss_pred             ---cccEEEe-----cccCCccCCCcEEC------CCCeEEEEEeEeecCCCCccceEEEEe---CHHHHHHHHHHc
Confidence               1123322     35788999999982      224599999987644332222 22233   346777777654

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.72  E-value=2.7e-17  Score=133.32  Aligned_cols=190  Identities=15%  Similarity=0.139  Sum_probs=104.2

Q ss_pred             CCccceE--EEEee---CCeEEeEEEEeeCCEEEeccCCcCCCCCc--eEEEEEeeeecccCCCCceEEeeeEEEECCCC
Q psy10841         54 LGAWPWL--IALYR---DGFFHCGGVVLDESWVMTAAHCVDGFEKH--YFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMF  126 (286)
Q Consensus        54 ~~~~Pw~--v~i~~---~~~~~C~GtLIs~~~VLTaAhC~~~~~~~--~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y  126 (286)
                      ..++||.  ++|..   .+.++|+|+||++++|||||||+.+....  ...+.........  .............    
T Consensus        14 ~~~~p~~~v~~i~~~~~~~~~~cTG~lI~~~~vLTAaHcv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----   87 (216)
T d2o8la1          14 TTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDN--YPNGGFTAEQITK----   87 (216)
T ss_dssp             TTSGGGTTEEEEEEEETTEEEEEEEEEEETTEEEECHHHHHTTTTCGGGEEEEETCCBTTB--CTTCCEEEEEEEE----
T ss_pred             CCcCchheEEEEEEEcCCCCEEEEEEEEeCCEEEEeeeeeccCCCceEEEEEEecccccce--eeeeeEEeeeeec----
Confidence            4466765  44432   34678999999999999999999765442  2222222211111  1111122222221    


Q ss_pred             CCCCCCCceEEEEecCccccCCceee---eecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccccC
Q psy10841        127 KRAEMTNDLALLQLAAPLRYNRYVRP---ICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDR  203 (286)
Q Consensus       127 ~~~~~~~DiAllkL~~~i~~~~~v~p---icL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~~~  203 (286)
                        .....|+|||+|+.+........+   ..+... .....+....+.||......    .......-.+..       .
T Consensus        88 --~~~~~D~all~l~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~g~~~~~~~----~~~~~~~~~~~~-------~  153 (216)
T d2o8la1          88 --YSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNN-AETQTNQNITVTGYPGDKPV----ATMWESKGKITY-------L  153 (216)
T ss_dssp             --CSSSSCCEEEEECCCTTSCCTTTSSCCCEECCC-TTCCTTCEEEEEECCTTSST----TCEEEEEEEEEE-------E
T ss_pred             --cccCCceEEEEecccccccccccceeeeecccc-ccccCCceeEEEEccCCCce----eeEEEEeeEEEE-------c
Confidence              123579999999877654433222   222222 23445567788888643211    111111111111       1


Q ss_pred             CCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCC-CcHHHHHhhhcccc
Q psy10841        204 IADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS-QFVPWLMSNSERAK  278 (286)
Q Consensus       204 ~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~-~~~~WI~~~~~~~~  278 (286)
                      ....+..     ....|.|+|||||+  +    ....||||.+++..+.    ....+++. ...+||+++++...
T Consensus       154 ~~~~l~~-----~~~~~~G~SGgPv~--~----~~g~vVGI~s~g~~~~----~~~~v~~~~~~~~~i~~~i~~~~  214 (216)
T d2o8la1         154 KGEAMQY-----DLSTTGGNSGSPVF--N----EKNEVIGIHWGGVPNE----FNGAVFINENVRNFLKQNIEDIN  214 (216)
T ss_dssp             ETTEEEE-----SCCCCTTCTTCEEE--C----TTSCEEEEEEEEETTT----EEEEEECCHHHHHHHHHHCTTCE
T ss_pred             cCCeEEE-----ecCcCCCCCCCcEE--C----CCCEEEEEEeeecCCC----CcceEecCHHHHHHHHHhhhhcC
Confidence            1223322     34679999999998  2    2234999999886432    23445554 47799999987654

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=99.65  E-value=1.1e-16  Score=126.35  Aligned_cols=168  Identities=17%  Similarity=0.128  Sum_probs=95.6

Q ss_pred             CeEEeE-EEEe---eCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecC
Q psy10841         67 GFFHCG-GVVL---DESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAA  142 (286)
Q Consensus        67 ~~~~C~-GtLI---s~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~  142 (286)
                      +.+.|+ |.++   +.+||||||||+....  .  +..        ....+...+.....+|.       +|+|+++++.
T Consensus        10 ~~~~Ct~Gf~v~~~g~~~ilTAaHCv~~~~--~--~~~--------~~~~~~~~~~~~~~~~~-------~D~a~~~~~~   70 (187)
T d1hpga_          10 GGSRCSAAFNVTKGGARYFVTAGHCTNISA--N--WSA--------SSGGSVVGVREGTSFPT-------NDYGIVRYTD   70 (187)
T ss_dssp             TTEEEECCEEEEETTEEEEEECHHHHTTCS--E--EES--------STTCCEEEEEEEEECSB-------SCEEEEEECS
T ss_pred             CCCeEeeeEEEEcCCCcEEEEchhcCCCCC--e--eEE--------CCCCEEEEEEEeecccC-------Cchhheeccc
Confidence            346798 7777   4569999999996533  1  211        12445566666777764       7999999988


Q ss_pred             ccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeeccccccc-ccCCCCEEEEeeCCCCCCCCC
Q psy10841        143 PLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHY-EDRIADVICAGMPQGGRDTCQ  221 (286)
Q Consensus       143 ~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~-~~~~~~~~C~~~~~~~~~~c~  221 (286)
                      +......+.   +..       ...+...||.......................+... ........|..........|.
T Consensus        71 ~~~~~~~~~---~~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (187)
T d1hpga_          71 GSSPAGTVD---LYN-------GSTQDISSAANAVVGQAIKKSGSTTKVTSGTVTAVNVTVNYGDGPVYNMVRTTACSAG  140 (187)
T ss_dssp             SCCCCSEEE---CSS-------SCEEECCEECCCCTTCEEEEEETTTEEEEEEEEEEEEEEEETTEEEEEEEEECCCCCT
T ss_pred             CcccceeEe---cCC-------CcccccccceeeeccccccccccceeeeeeeeeeccccEEcCCccEeccEEcCccccc
Confidence            775444332   211       122333344322111100000000000000000000 011223344443345678899


Q ss_pred             CCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHH
Q psy10841        222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL  270 (286)
Q Consensus       222 gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI  270 (286)
                      |||||||++..       .++||++++..|+....+..|++|+.++.+.
T Consensus       141 GDSGgPl~~~~-------~~vGi~s~g~~~~~~~~~~~~~pv~~~l~~~  182 (187)
T d1hpga_         141 GDSGGAHFAGS-------VALGIHSGSSGCSGTAGSAIHQPVTEALSAY  182 (187)
T ss_dssp             TCTTCEEEETT-------EEEEEEEEESCCBTTBCCCEEEEHHHHHHHH
T ss_pred             CCCCCeEEECC-------EEEEEEEEEecCCCCCCCEEEEEHHHHHHHh
Confidence            99999999632       4999999999887767789999999988764

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.47  E-value=2e-14  Score=118.63  Aligned_cols=194  Identities=14%  Similarity=0.112  Sum_probs=106.5

Q ss_pred             eCCCCccce--EEEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCC--ceEEEEEeeeecccC---CCCceEEeeeEEEEC
Q psy10841         51 KAELGAWPW--LIALYRDGFFHCGGVVLDESWVMTAAHCVDGFEK--HYFEVYAGMLRRFSF---SPTEQVRPVSRIVMH  123 (286)
Q Consensus        51 ~a~~~~~Pw--~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~--~~~~v~~g~~~~~~~---~~~~~~~~v~~~~~h  123 (286)
                      -....++||  +++|...+..+|+|+||++++|||++||+.+...  ..+.+..+.......   ......+.+..+..+
T Consensus        28 v~d~~~~p~~~v~~i~~~g~~~GTGflI~~~~ILTa~HVv~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (246)
T d1qtfa_          28 ITDNARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKES  107 (246)
T ss_dssp             CSCCSSTTGGGEEEEEETTTEEEEEEEEETTEEEECHHHHGGGTTCGGGEEEEETCCCCTTTTCCCCTTCCEEEEEEESC
T ss_pred             ecccccCccccEEEEEeCCCceEEEEEEeCCeEEEchhecccCCcceEEEEEecCCcceeeeeeecCCCceEEEEEEEec
Confidence            334456777  6788878888999999999999999999965433  233333332211111   112233444544443


Q ss_pred             CCCCCCCCCCceEEEEecCccccCCcee---eeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeeccccccc
Q psy10841        124 SMFKRAEMTNDLALLQLAAPLRYNRYVR---PICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHY  200 (286)
Q Consensus       124 p~y~~~~~~~DiAllkL~~~i~~~~~v~---picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~  200 (286)
                      +    .....|+|||+|+..........   ++.+.. ......++.+.++||......    ...........+.    
T Consensus       108 ~----~~~~~DiAll~l~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~i~~~G~P~~~~~----~~~~~~~~~~~~~----  174 (246)
T d1qtfa_         108 P----YGQGLDLAIIKLKPNEKGESAGDLIQPANIPD-HIDIAKGDKYSLLGYPYNYSA----YSLYQSQIEMFND----  174 (246)
T ss_dssp             T----TCTTSCCEEEEECCCTTSCCHHHHSCCCCCCS-SCCCCTTCEEEEEECCTTTST----TCCEEEEEEESSS----
T ss_pred             C----CcccCceEEEEeccccccccccccCceeeccc-cccccCCCEEEEEeCCCCCCc----ceeeccceEeCCC----
Confidence            3    22356999999987654433222   222222 123455678899998643211    1111222222110    


Q ss_pred             ccCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCC--------CCCeeEEeCCCcHHHHHh
Q psy10841        201 EDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARP--------NEPGVYTRVSQFVPWLMS  272 (286)
Q Consensus       201 ~~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~--------~~p~v~t~v~~~~~WI~~  272 (286)
                           ..+       ...+..|+|||||+-      ....||||.+.+.+-...        ..-..+.....+.+||.+
T Consensus       175 -----~~~-------~~~~~~G~SGgPv~n------~~G~vVGI~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (246)
T d1qtfa_         175 -----SQY-------FGYTEVGNSGSGIFN------LKGELIGIHSGKGGQHNLPIGVFFNRKISSLYSVDNTFGDTLGN  236 (246)
T ss_dssp             -----SBE-------ESCCCGGGTTCEEEC------TTCCEEEEEEEEETTTTEEEEEETTCBCCTTTSTTCCSSCBHHH
T ss_pred             -----ceE-------EeeccCCCCCCcEEC------CCCeEEEEEecccCCCCCccceEeecccchhhhhhHHHHHHHHH
Confidence                 001       124568999999992      122499999876431110        011234445567788866


Q ss_pred             hhc
Q psy10841        273 NSE  275 (286)
Q Consensus       273 ~~~  275 (286)
                      .++
T Consensus       237 ~~~  239 (246)
T d1qtfa_         237 DLK  239 (246)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            654

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=99.11  E-value=7.1e-11  Score=92.28  Aligned_cols=156  Identities=20%  Similarity=0.240  Sum_probs=83.4

Q ss_pred             EEeE-EEEeeC---CEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCcc
Q psy10841         69 FHCG-GVVLDE---SWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPL  144 (286)
Q Consensus        69 ~~C~-GtLIs~---~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i  144 (286)
                      ..|+ |..+..   .+|||||||+.....    +.++..+               -..||       .+|+|||+++.+.
T Consensus        12 ~~ct~Gf~v~~~~~~~vlTA~Hc~~~~~~----~~vg~~~---------------g~~~p-------~~D~Ali~~~~~~   65 (181)
T d2sgaa_          12 SRCSLGFNVSVNGVAHALTAGHCTNISAS----WSIGTRT---------------GTSFP-------NNDYGIIRHSNPA   65 (181)
T ss_dssp             EEEECCEEEEETTEEEEEECHHHHTTCSE----ETTEEEE---------------EEECS-------BSCEEEEEESCGG
T ss_pred             ccEeeeEeEEECCCCEEEEChhhCCCCCe----EEEEecc---------------CccCC-------ccceEEEEecCcc
Confidence            4688 666643   389999999965441    2122111               11234       3799999999877


Q ss_pred             ccCCcee-----eeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccccCCCCEEEEeeCCCCCCC
Q psy10841        145 RYNRYVR-----PICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDT  219 (286)
Q Consensus       145 ~~~~~v~-----picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~C~~~~~~~~~~  219 (286)
                      .+...+.     ...+.. ...+..++.+...|+....         ..-.+.....+.....  ........ +.....
T Consensus        66 ~~~~~~~~~~~~~~~~~~-~~~~~~G~~v~~~G~~~g~---------~~g~v~~~~~~~~~~~--~~~~~~~~-~~~~~~  132 (181)
T d2sgaa_          66 AADGRVYLYNGSYQDITT-AGNAFVGQAVQRSGSTTGL---------RSGSVTGLNATVNYGS--SGIVYGMI-QTNVCA  132 (181)
T ss_dssp             GCCCEEECSSSCEEECCE-ECCCCTTCEEEEEETTTEE---------EEEEEEEEEEEEECGG--GCEEEEEE-EESCCC
T ss_pred             cccceeecCCCceeeecC-CCcCCCCCEEEEeCCCCcc---------cccceeeecceEEecC--CCeEeeeE-EEeeec
Confidence            6543221     111111 1234556777777764221         1111111111111000  11111110 112334


Q ss_pred             CCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHH
Q psy10841        220 CQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWL  270 (286)
Q Consensus       220 c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI  270 (286)
                      .+|||||||+...       .++||++.+..++.......|++|..+++++
T Consensus       133 ~~GdSGGPv~~~~-------~~vGi~sgg~~~~~~~~~~~~~pv~~~l~~~  176 (181)
T d2sgaa_         133 QPGDSGGSLFAGS-------TALGLTSGGSGNCRTGGTTFYQPVTEALSAY  176 (181)
T ss_dssp             CTTCTTCEEEETT-------EEEEEEEEEEEETTTEEEEEEEEHHHHHHHH
T ss_pred             cCCCcCCeeEECC-------EEEEEEEEecCCCCCCceEEEEEHHHHHHHh
Confidence            5899999999522       4899999988654434467899988777664

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=99.02  E-value=9.1e-10  Score=86.10  Aligned_cols=160  Identities=19%  Similarity=0.228  Sum_probs=79.2

Q ss_pred             CeEEeE-EEEee---CCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecC
Q psy10841         67 GFFHCG-GVVLD---ESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAA  142 (286)
Q Consensus        67 ~~~~C~-GtLIs---~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~  142 (286)
                      +...|+ |..+.   ..+||||+||+....  .  +...       ......+.......+|       .+|+||||++.
T Consensus        10 ~~~~CT~Gf~v~~~~~~~ilTA~Hcv~~~~--~--~~~~-------~~~~~~~g~~~~~~~~-------~~D~All~~~~   71 (185)
T d2qaaa1          10 STGRCSLGFNVRSGSTYYFLTAGHCTDGAT--T--WWAN-------SARTTVLGTTSGSSFP-------NNDYGIVRYTN   71 (185)
T ss_dssp             SSCEEECCEEEEETTEEEEEECHHHHTTCC--E--EESS-------TTSCSEEEEEEEEECS-------BSCEEEEEECC
T ss_pred             CCCcEeeeEeEEECCccEEEECCCccCCCC--E--EEEE-------cCCCeEeeeEEeccCC-------CCCeEEEEecc
Confidence            335698 77774   349999999986533  1  2111       1122333333344455       37999999986


Q ss_pred             ccccCCc-eeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccccCCCCEEEEeeCCCCCCCCC
Q psy10841        143 PLRYNRY-VRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQ  221 (286)
Q Consensus       143 ~i~~~~~-v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~C~~~~~~~~~~c~  221 (286)
                      +...... .....+.. ...+..++.+...|+...    ............+..       .....++... ..+.....
T Consensus        72 ~~~~~~~~~~~~~v~~-~~~~~~G~~v~~~G~~tg----~~~g~v~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~  138 (185)
T d2qaaa1          72 TTIPKDGTVGGQDITS-AANATVGMAVTRRGSTTG----THSGSVTALNATVNY-------GGGDVVYGMI-RTNVCAEP  138 (185)
T ss_dssp             SSSCCCSEETTEECCE-ECCCCTTCEEEEEETTTE----EEEEEEEEEEEEEEC-------STTCEEEEEE-EESCCCCT
T ss_pred             CCcccccccCceeccC-CCcCCCCCEEEEccCCCC----cccceeEeeEEEEEc-------CCCCeeeeEE-EEeeeecC
Confidence            5432211 11122221 133556777777775321    111111111111100       0111222211 11234558


Q ss_pred             CCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCC
Q psy10841        222 GDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVS  264 (286)
Q Consensus       222 gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~  264 (286)
                      |||||||+..     +  .++||++.+..+........|+.|.
T Consensus       139 GdSGGPv~~~-----~--~~vGi~~~g~~~~~~~~~~~~~Pi~  174 (185)
T d2qaaa1         139 GDSGGPLYSG-----T--RAIGLTSGGSGNCSSGGTTFFQPVT  174 (185)
T ss_dssp             TCTTCEEEET-----T--EEEEEEEEEEEETTTEEEEEEEEHH
T ss_pred             CcccceeEEC-----C--EEEEEEEEeecCCCCCceEEEEEHH
Confidence            9999999942     1  4999999886443323234555543

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

Probab=98.98  E-value=4.6e-09  Score=82.78  Aligned_cols=28  Identities=36%  Similarity=0.585  Sum_probs=21.3

Q ss_pred             CCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecC
Q psy10841        216 GRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGE  249 (286)
Q Consensus       216 ~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~  249 (286)
                      +...++|||||||+..    ++  .++||++.+.
T Consensus       135 ~~~~~~GdSGGPv~~~----~g--~vvGI~sgg~  162 (198)
T d2h5ca1         135 NACMGRGDSGGSWITS----AG--QAQGVMSGGN  162 (198)
T ss_dssp             CSCCBTTCTTCEEECT----TC--BEEEEEEEEC
T ss_pred             eeeeecccccccEEcC----CC--EEEEEEcccc
Confidence            4567899999999932    22  3999999875

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.89  E-value=1.1e-08  Score=82.07  Aligned_cols=187  Identities=18%  Similarity=0.135  Sum_probs=91.6

Q ss_pred             cceEEEEeeCC---eEEeEEEEeeCC-EEEeccCCcCCCCC-------ceEEEEEeeeecccCCCCceEEeeeEEEECCC
Q psy10841         57 WPWLIALYRDG---FFHCGGVVLDES-WVMTAAHCVDGFEK-------HYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSM  125 (286)
Q Consensus        57 ~Pw~v~i~~~~---~~~C~GtLIs~~-~VLTaAhC~~~~~~-------~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~  125 (286)
                      -|-+|.|....   ...++|.+|+++ +|||++|++.+...       ..+.|.+.         ....+..+-+...+ 
T Consensus        11 ~~svV~I~~~~~~~~~~GSGfvi~~~G~IlTn~HVV~~~~~~~~~~~~~~i~v~~~---------dg~~~~a~vi~~d~-   80 (221)
T d2z9ia2          11 VPSVVMLETDLGRQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFS---------DGRTAPFTVVGADP-   80 (221)
T ss_dssp             GGGEEEEEEEC----CEEEEEECCTTSEEEECHHHHHHHHCCC------EEEEEET---------TSCEECCEEEEEET-
T ss_pred             CCcEEEEEeccCCcCcceEEEEEECCCEEEEcHHHhhccccccccccCceEEEEcC---------CceeeeeeeEeecc-
Confidence            36678885432   356899999988 99999999843211       22233321         12334444333332 


Q ss_pred             CCCCCCCCceEEEEecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccccCCC
Q psy10841        126 FKRAEMTNDLALLQLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIA  205 (286)
Q Consensus       126 y~~~~~~~DiAllkL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~  205 (286)
                            ..|+|||++..+.....    ..+.. ...+..++.+..+|+....................  ..........
T Consensus        81 ------~~DlAll~~~~~~~~~~----~~~~~-~~~~~~g~~v~~~g~p~g~~~~~~~g~~~~~~~~~--~~~~~~~~~~  147 (221)
T d2z9ia2          81 ------TSDIAVVRVQGVSGLTP----ISLGS-SSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPV--STTGEAGNQN  147 (221)
T ss_dssp             ------TTTEEEEECCSCCSCCC----CEECC-GGGCCTTCEEEEEECGGGCTTEEEEEEEEEEEEEE--EC-------C
T ss_pred             ------ccceeeeeeccccccee----ecccc-ccccccCceeeeeeccCCCcccccccceeeccccc--cccccccccc
Confidence                  47999999987654221    11211 23456778888888753311100011111111000  0000001111


Q ss_pred             CEEEEeeCCCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCC--------CCeeEEeCCCcHHHHHhhh
Q psy10841        206 DVICAGMPQGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPN--------EPGVYTRVSQFVPWLMSNS  274 (286)
Q Consensus       206 ~~~C~~~~~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~--------~p~v~t~v~~~~~WI~~~~  274 (286)
                      ...-.-  ..+.....|.|||||+-      .+-.|+||.+.........        ..+....+....+|+++.+
T Consensus       148 ~~~~~i--~~~~~i~~G~SGGPv~n------~~G~vVGI~~~~~~~~~~~~~~~~~~~gi~faIP~~~v~~~l~~l~  216 (221)
T d2z9ia2         148 TVLDAI--QTDAAINPGNSGGALVN------MNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELI  216 (221)
T ss_dssp             CEEEEE--EECSCCCTTCTTEEEEC------TTSEEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHH
T ss_pred             cccceE--EEeecccCCCCCCccCc------CCCEEEEEEEEEecccccccccccCccCeEEEEEHHHHHHHHHHHH
Confidence            111000  11345668999999992      2335999998765322110        0123455555566666554

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.83  E-value=3.3e-08  Score=79.59  Aligned_cols=170  Identities=18%  Similarity=0.121  Sum_probs=85.4

Q ss_pred             EEeEEEEeeCC-EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccccC
Q psy10841         69 FHCGGVVLDES-WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYN  147 (286)
Q Consensus        69 ~~C~GtLIs~~-~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~  147 (286)
                      ...+|.+|+++ ||||++|++.+...  +.|...         ....+..+-+...       ...|+|||+++.+-   
T Consensus        56 s~GSGfiI~~~G~IlTn~HVv~~~~~--~~v~~~---------~~~~~~a~v~~~~-------~~~dlall~v~~~~---  114 (228)
T d1l1ja_          56 SLGSGFIFDPEGYILTNYHVVGGADN--ITVTML---------DGSKYDAEYIGGD-------EELDIAVIKIKASD---  114 (228)
T ss_dssp             EEEEEEEEETTTEEEEEHHHHSSCSS--CEEECT---------TSCEEEBCCCEEE-------TTTTEEEEEBCCSS---
T ss_pred             cceEEEEeecCceEEeeccccccccc--ceEEee---------cceeEeEEEeeec-------ccccceeeEeecCC---
Confidence            46899999987 99999999976543  233221         1222222212222       24799999997432   


Q ss_pred             CceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccccCCCCEEEEeeCCCCCCCCCCCCCCe
Q psy10841        148 RYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGP  227 (286)
Q Consensus       148 ~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~C~~~~~~~~~~c~gdsGgP  227 (286)
                      ..+.++.|... .....++.+.++||......     ............-...........-..  ..+...-.|.||||
T Consensus       115 ~~~~~l~l~~s-~~~~~G~~V~aiG~P~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~da~i~~G~SGGP  186 (228)
T d1l1ja_         115 KKFPYLEFGDS-DKVKIGEWAIAIGNPLGFQH-----TVTVGVVSATNRRIPKPDGSGYYVGLI--QTDAAINPGNSGGP  186 (228)
T ss_dssp             SCCCCCEECCG-GGCCTTCEEEEEECTTSSSC-----EEEEEEEEEEEEEEECTTSSCEEEEEE--EESSCCCTTTTTSE
T ss_pred             CCCceEEccCc-cccccCCcEEEEECCCCCCC-----ceEeeeeeccccccccccCcCccccee--EEecccCCCCCCCc
Confidence            23445666432 34567899999998532111     011111100000000000001111000  11344568999999


Q ss_pred             eeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhh
Q psy10841        228 LLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN  273 (286)
Q Consensus       228 L~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~  273 (286)
                      |+-      .+-.|+||.+....-......+....+.....+|++.
T Consensus       187 l~n------~~G~VIGI~~~~~~~~~~~~i~faIp~~~i~~~l~~l  226 (228)
T d1l1ja_         187 LLN------IHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTI  226 (228)
T ss_dssp             EEC------SSSEEEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGG
T ss_pred             EEC------CCCEEEEEEEEEecCCCCCCEEEEEEHHHHHHHHHHh
Confidence            992      2224999987654221111123345555555555544

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Mitochondrial serine protease HtrA2, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.3e-08  Score=79.24  Aligned_cols=82  Identities=16%  Similarity=0.133  Sum_probs=51.6

Q ss_pred             EeEEEEeeCC-EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccccCC
Q psy10841         70 HCGGVVLDES-WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNR  148 (286)
Q Consensus        70 ~C~GtLIs~~-~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~~  148 (286)
                      .-+|.+|+++ +|||++||+.+..  .+.|...         ....+..+-+..+|       ..|+||++++.+-.   
T Consensus        43 ~GSGf~i~~~G~IlT~~HVv~~~~--~i~V~~~---------~g~~~~a~vv~~d~-------~~dlall~~~~~~~---  101 (205)
T d1lcya2          43 NGSGFVVAADGLIVTNAHVVADRR--RVRVRLL---------SGDTYEAVVTAVDP-------VADIATLRIQTKEP---  101 (205)
T ss_dssp             EEEEEEEETTTEEEECHHHHTTCS--EEEEECT---------TSCEEEEEEEEEET-------TTTEEEEECCCSSC---
T ss_pred             ceEEEEEECCCeEEEechhhhhhh--hcccccc---------ccccccceeeeeec-------ceeeEEEEecCCCC---
Confidence            5789999987 9999999997643  3333221         22333443333333       47999999975432   


Q ss_pred             ceeeeecCCCCCCCCCCCceEEEEec
Q psy10841        149 YVRPICLPDVTETPEPYSTCTAVGWG  174 (286)
Q Consensus       149 ~v~picL~~~~~~~~~~~~~~~~Gwg  174 (286)
                       +.++.|... ..+..++.+.++||.
T Consensus       102 -~~~l~l~~~-~~~~~G~~v~~iG~P  125 (205)
T d1lcya2         102 -LPTLPLGRS-ADVRQGEFVVAMGSP  125 (205)
T ss_dssp             -CCCCCBCCG-GGCCTTCEEEECCCT
T ss_pred             -CcEEEcccc-ccCCCCCEEEEEECC
Confidence             345555432 235667888888874

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=2.5e-07  Score=73.29  Aligned_cols=142  Identities=17%  Similarity=0.202  Sum_probs=77.1

Q ss_pred             EEeEEEEeeCC-EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccccC
Q psy10841         69 FHCGGVVLDES-WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYN  147 (286)
Q Consensus        69 ~~C~GtLIs~~-~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~  147 (286)
                      ...+|.+|+++ +|||++|++.+..  .+.|.+.         ....+..+-+..++       ..|+|||++..+-.+ 
T Consensus        36 s~GSGfvi~~~G~IlTn~HVV~~~~--~i~v~~~---------~~~~~~~~~~~~~~-------~~Dlall~~~~~~~~-   96 (210)
T d2qf3a1          36 TLGSGVIMDQRGYIITNKHVINDAD--QIIVALQ---------DGRVFEALLVGSDS-------LTDLAVLKINATGGL-   96 (210)
T ss_dssp             EEEEEEECSTTCEEEEEHHHHTTCS--EEEEECT---------TSCEEECEEEEEET-------TTTEEEEECCCSSCC-
T ss_pred             cceEEEEEECCceEEechhhccccc--ccccccc---------cccceeeEEecccc-------ccchhheeccccccc-
Confidence            46999999987 9999999996543  4444321         23334444444444       479999999765432 


Q ss_pred             CceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccc-cCCCCEEEEeeCCCCCCCCCCCCCC
Q psy10841        148 RYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE-DRIADVICAGMPQGGRDTCQGDSGG  226 (286)
Q Consensus       148 ~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~-~~~~~~~C~~~~~~~~~~c~gdsGg  226 (286)
                         .+..+.. ...+..++.+..+|+......    ..........  ...... ......+..     +...-.|.|||
T Consensus        97 ---~~~~~~~-~~~~~~g~~v~~~G~p~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~i~~-----~a~i~~G~SGG  161 (210)
T d2qf3a1          97 ---PTIPINA-RRVPHIGDVVLAIGNPYNLGQ----TITQGIISAT--GRIGLNPTGRQNFLQT-----DASINHGNSGG  161 (210)
T ss_dssp             ---CCCCCCT-TCCCCTTBEEEEEECGGGSSS----EEEEEEEEES--CC---------CCEEE-----CSCCCTTCTTC
T ss_pred             ---ccccccc-ccccccceEEEEecccccccc----ccccccceee--eeeeeccccceeEEEE-----eeeEEeccCCC
Confidence               2223322 345667788888887643111    0000000000  011000 011122332     23456899999


Q ss_pred             eeeeecCCCCCcEEEEEEEEecCC
Q psy10841        227 PLLCPVPGSQGRWYVAGVVSHGEG  250 (286)
Q Consensus       227 PL~~~~~~~~~~~~lvGI~s~~~~  250 (286)
                      ||+-.    ++  .|+||++....
T Consensus       162 Pv~n~----~G--~vVGI~~~~~~  179 (210)
T d2qf3a1         162 ALVNS----LG--ELMGINTLSFD  179 (210)
T ss_dssp             EEEET----TC--CEEEEEEEEC-
T ss_pred             ceEee----cC--EEEEEEEEEee
Confidence            99932    22  39999987653

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=4.7e-07  Score=73.64  Aligned_cols=165  Identities=18%  Similarity=0.196  Sum_probs=90.1

Q ss_pred             EEeEEEEeeCC--EEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCcccc
Q psy10841         69 FHCGGVVLDES--WVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRY  146 (286)
Q Consensus        69 ~~C~GtLIs~~--~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~  146 (286)
                      ..-+|.+|+++  +|||.+|.+.+..  .+.|...         ....+..+.+...+       ..|+|||+++.+-. 
T Consensus        76 ~~GSG~iI~~~~g~IlTn~HVv~~~~--~~~v~~~---------~~~~~~a~~~~~d~-------~~dlavl~i~~~~~-  136 (249)
T d1ky9a2          76 ALGSGVIIDADKGYVVTNNHVVDNAT--VIKVQLS---------DGRKFDAKMVGKDP-------RSDIALIQIQNPKN-  136 (249)
T ss_dssp             EEEEEEEEETTTTEEEEEHHHHTTEE--EEEEEET---------TSCEEEEEEEEEET-------TTTEEEEEESSCCS-
T ss_pred             ccccEEEEeccCceEEeeccccccce--eeeeeec---------ccccccceeeEecc-------chhhceeeeccccc-
Confidence            46899999864  9999999996532  3344332         23344444444443       47999999976432 


Q ss_pred             CCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccc---cccCCCCEEEEeeCCCCCCCCCCC
Q psy10841        147 NRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKH---YEDRIADVICAGMPQGGRDTCQGD  223 (286)
Q Consensus       147 ~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~---~~~~~~~~~C~~~~~~~~~~c~gd  223 (286)
                         +.++.|... .....++.+.++|+.....     .   ............   ........+=     .+...-.|.
T Consensus       137 ---~~~~~l~~~-~~~~~G~~v~aiG~P~g~~-----~---tvt~~~~~~~~~~~~~~~~~~~~iq-----tda~i~~Gn  199 (249)
T d1ky9a2         137 ---LTAIKMADS-DALRVGDYTVAIGNPFGLG-----E---TVTSGIVSALGRSGLNAENYENFIQ-----TDAAINRGN  199 (249)
T ss_dssp             ---CCCCCBCCG-GGCCTTCEEEEEECTTSSS-----C---EEEEEEEEEESSCC-----CCCCEE-----ESCCCTTSC
T ss_pred             ---ceEEEcCCc-CcCCcCCEEEEEecccccC-----C---ceeecceeecccccccCccccceEE-----EeeeecCCC
Confidence               456667542 3466789999999853211     1   111111110000   0001112221     134566899


Q ss_pred             CCCeeeeecCCCCCcEEEEEEEEecCCCCCC-CCCeeEEeCCCcHHHHHhhhc
Q psy10841        224 SGGPLLCPVPGSQGRWYVAGVVSHGEGCARP-NEPGVYTRVSQFVPWLMSNSE  275 (286)
Q Consensus       224 sGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~-~~p~v~t~v~~~~~WI~~~~~  275 (286)
                      |||||+-  .  ++  .|+||.+........ ...+....+....+++.+.++
T Consensus       200 SGGPl~n--~--~G--~vIGI~t~~~~~~~~~~gi~faIP~~~~~~~~~~l~~  246 (249)
T d1ky9a2         200 AGGALVN--L--NG--ELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVE  246 (249)
T ss_dssp             CCSEEEC--T--TS--CEEEEEECSSTTSCCCSSSEEEEEHHHHHHHHHHHHH
T ss_pred             CCceEEC--C--CC--EEEEEEEEEeccCCCcccEEEEEEHHHHHHHHHHHHH
Confidence            9999982  1  22  399999876532211 112334455555666666553

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: TEV protease (nucleat inclusion protein A, NIA)
species: Tobacco etch virus, TEV [TaxId: 12227]

Probab=98.44  E-value=9.3e-06  Score=64.36  Aligned_cols=162  Identities=13%  Similarity=0.100  Sum_probs=84.5

Q ss_pred             EeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEecCccccCCceeeee
Q psy10841         75 VLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQLAAPLRYNRYVRPIC  154 (286)
Q Consensus        75 LIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL~~~i~~~~~v~pic  154 (286)
                      ++...+|||.+|.+.+.. ..+.+..-       ........+..+.+++.     ...|+|+||++....  +   .+.
T Consensus        33 i~~~~~IiTN~HVv~~~~-~~~~i~~~-------~G~~~~~~~~~i~i~~~-----~~~DLaiik~~~~~~--p---~~~   94 (219)
T d1lvmb_          33 IGFGPFIITNKHLFRRNN-GTLLVQSL-------HGVFKVKNTTTLQQHLI-----DGRDMIIIRMPKDFP--P---FPQ   94 (219)
T ss_dssp             EEETTEEEECGGGGSCCS-EEEEEEET-------TEEEEESCGGGSEEEEC-----TTSSCEEEECCTTSC--C---CCS
T ss_pred             EEeCCEEEECccccccCC-ceEEEEEc-------CCcEeecceEEEEeeec-----CCccEEEEEcCCCCC--C---cce
Confidence            566789999999996533 22233221       00001111122222221     246999999976542  1   123


Q ss_pred             cCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccccCCCCEEEEeeCCCCCCCCCCCCCCeeeeecCC
Q psy10841        155 LPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYEDRIADVICAGMPQGGRDTCQGDSGGPLLCPVPG  234 (286)
Q Consensus       155 L~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~C~~~~~~~~~~c~gdsGgPL~~~~~~  234 (286)
                      |.. ...+..++.+.++|+...... .    ..  .+.......  .......+-.     ...+..|.|||||+-..  
T Consensus        95 l~~-~~~~~~Ge~V~aiG~p~~~~~-~----~~--~v~~~~~~~--~~~~~~~~~~-----~~~t~~GnSGGPlvd~~--  157 (219)
T d1lvmb_          95 KLK-FREPQREERICLVTTNFQTKS-M----SS--MVSDTSCTF--PSSDGIFWKH-----WIQTKDGQCGSPLVSTR--  157 (219)
T ss_dssp             CCC-BCCCCTTCEEEEEEECCSCGG-G----CE--EECCCEECE--EETTTTEEEE-----CBCCCTTCTTCEEEETT--
T ss_pred             ecc-cCCCCcCCEEEEEEccCCCCc-e----EE--EEeccceee--ccCCCceEEE-----EEEcCCCCCCCceEEcC--
Confidence            333 245677899999998532110 0    00  010000000  0011222222     23567899999999432  


Q ss_pred             CCCcEEEEEEEEecCCCCCCCCCeeEEeC-CCcHHHHHhhhccc
Q psy10841        235 SQGRWYVAGVVSHGEGCARPNEPGVYTRV-SQFVPWLMSNSERA  277 (286)
Q Consensus       235 ~~~~~~lvGI~s~~~~c~~~~~p~v~t~v-~~~~~WI~~~~~~~  277 (286)
                       ++  .|+||.+.+..-.   .-..|+.| ..+.++|.+.-..+
T Consensus       158 -dG--~VVGIhs~~~~~~---~~n~~~~i~~~~~~~l~~~~~~~  195 (219)
T d1lvmb_         158 -DG--FIVGIHSASNFTN---TNNYFTSVPKNFMELLTNQEAQQ  195 (219)
T ss_dssp             -TC--CEEEEEEEEETTS---SSEEEEECCTTHHHHHHCGGGCC
T ss_pred             -CC--EEEEEEEeeeccc---ceEEEEecCHHHHHHHhhccccC
Confidence             12  3999999875322   24568888 55888887765443

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Foot-and-mouth disease virus FMDV [TaxId: 12110]

Probab=98.04  E-value=1.6e-05  Score=61.84  Aligned_cols=177  Identities=16%  Similarity=0.079  Sum_probs=90.7

Q ss_pred             EEEeeCCe--EEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEE
Q psy10841         61 IALYRDGF--FHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALL  138 (286)
Q Consensus        61 v~i~~~~~--~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAll  138 (286)
                      +.+.+++.  ..|.|..|..+++||.+|.+.... ..  +.++.......  ..........++.     .....|+|||
T Consensus        13 i~~~~~g~~~~~g~gl~v~g~~~l~~~H~~~~~~-~~--i~~~~~~~~~~--~~~~~~~~~~v~~-----~d~~~Dlall   82 (199)
T d2bhga1          13 VELNLDGKTVAICCATGVFGTAYLVPRHLFAEKY-DK--IMLDGRAMTDS--DYRVFEFEIKVKG-----QDMLSDAALM   82 (199)
T ss_dssp             EEEEETTEEEEEEEEEEEEBTEEEEEHHHHTSCC-SE--EEETTEEECGG--GEEEECCEECCSS-----SCEECSEEEE
T ss_pred             EEEEECCeEEEEeEEEEEECCEEEECCcEeecCC-CE--EEEeeeEEEEE--eccceEEEEEEEe-----cCCCccEEEE
Confidence            34445553  469999999999999999986422 22  22221111110  0111111111111     1235799999


Q ss_pred             EecCccccCCceeeeecCCCCCCCCCCCceEEEEecccCCCCCCCccceeEeeeecccccccc-----cCCCCEEEEeeC
Q psy10841        139 QLAAPLRYNRYVRPICLPDVTETPEPYSTCTAVGWGAVFEHGPDPDHMREVQVPILPACKHYE-----DRIADVICAGMP  213 (286)
Q Consensus       139 kL~~~i~~~~~v~picL~~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~l~~~~~~~~~~c~~~~-----~~~~~~~C~~~~  213 (286)
                      +|++.-.|.+...  -+.. ......++.+.++|+.....     .   .........+....     ......+...  
T Consensus        83 ~l~~~~~~~~~~~--~~~~-~~~~~~g~~v~~ig~p~~~~-----~---~~~~~~~~~~~~~~~~~~g~~~~~~~~y~--  149 (199)
T d2bhga1          83 VLHRGNKVRDITK--HFRD-TARMKKGTPVVGVVNNADVG-----R---LIFSGEALTYKDIVVSMDGDTMPGLFAYK--  149 (199)
T ss_dssp             EESSSCCBCCCGG--GBCS-SCEECTTCEEEEEEEETTTE-----E---EEEEEEESSCEECCC-----CCTTEEEEE--
T ss_pred             EcCCCCcCCcccc--cccc-cccccccceEEEEEcCCCCC-----c---eEEEEEEEEecceeecCCCccccCEEEEE--
Confidence            9986554443322  2222 23345567788888753210     0   11111111111100     0112333332  


Q ss_pred             CCCCCCCCCCCCCeeeeecCCCCCcEEEEEEEEecCCCCCCCCCeeEEeCCCcHHHHHhh
Q psy10841        214 QGGRDTCQGDSGGPLLCPVPGSQGRWYVAGVVSHGEGCARPNEPGVYTRVSQFVPWLMSN  273 (286)
Q Consensus       214 ~~~~~~c~gdsGgPL~~~~~~~~~~~~lvGI~s~~~~c~~~~~p~v~t~v~~~~~WI~~~  273 (286)
                         ..+-.|++||||+...   +....++||.+.|.+.     -+..+.|  ..++|++.
T Consensus       150 ---a~t~~G~cGgplv~~~---~~~~~IvGih~aG~~g-----~G~a~~i--t~e~i~~~  196 (199)
T d2bhga1         150 ---AATRAGYAGGAVLAKD---GADTFIVGTHSAGGNG-----VGYCSCV--SRSMLQKM  196 (199)
T ss_dssp             ---CCCCTTCTTCEEEEEE---TTEEEEEEEEEEEETT-----EEEEEEC--CHHHHHHH
T ss_pred             ---eccCCCCcCCeEEEec---CCeEEEEEEEeCCCCC-----EEEEEEc--cHHHHHHH
Confidence               2345799999999665   4567799999987531     2445555  36677643

>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Human rhinovirus 2 [TaxId: 12130]

Probab=96.41  E-value=0.1  Score=38.91  Aligned_cols=70  Identities=10%  Similarity=0.121  Sum_probs=37.9

Q ss_pred             EEEeeCCeEEeEEEEeeCCEEEeccCCcCCCCCceEEEEEeeeecccCCCCceEEeeeEEEECCCCCCCCCCCceEEEEe
Q psy10841         61 IALYRDGFFHCGGVVLDESWVMTAAHCVDGFEKHYFEVYAGMLRRFSFSPTEQVRPVSRIVMHSMFKRAEMTNDLALLQL  140 (286)
Q Consensus        61 v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~~~~~DiAllkL  140 (286)
                      +.|..+...+ +|-.|..+|+|+.+|.+...   .  +.+          ....+++.....-.  +......|++||+|
T Consensus        16 ~~i~t~~G~~-tgLgI~~~~~lvp~H~~~~~---~--i~i----------~~~~~~i~d~~~l~--~~~~~~~Dl~lvkl   77 (180)
T d1cqqa_          16 CVITTENGKF-TGLGVYDRFVVVPTHADPGK---E--IQV----------DGITTKVIDSYDLY--NKNGIKLEITVLKL   77 (180)
T ss_dssp             EEEEETTEEE-EEEEEEBTEEEEEGGGCCCS---E--EEE----------TTEEEEEEEEEEEE--CTTSCEEEEEEEEE
T ss_pred             EEEEECCeEE-EEEEEECCEEEEecccCCCC---E--EEE----------CCEEEEeeceEEEE--ccCCCceEEEEEEc
Confidence            4444443322 47778999999999986431   1  222          12223332222111  22233469999999


Q ss_pred             cCccccCC
Q psy10841        141 AAPLRYNR  148 (286)
Q Consensus       141 ~~~i~~~~  148 (286)
                      ++.-.|.+
T Consensus        78 p~~~~frd   85 (180)
T d1cqqa_          78 DRNEKFRD   85 (180)
T ss_dssp             CSSCCBCC
T ss_pred             CCCcccCc
Confidence            86544544

>d2h6ma1 b.47.1.4 (A:1-212) 3C cysteine protease (picornain 3C) {Human hepatitis A virus [TaxId: 208726]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Human hepatitis A virus [TaxId: 208726]

Probab=89.82  E-value=0.48  Score=35.94  Aligned_cols=23  Identities=9%  Similarity=0.339  Sum_probs=19.5

Q ss_pred             eEEeEEEEeeCCEEEeccCCcCC
Q psy10841         68 FFHCGGVVLDESWVMTAAHCVDG   90 (286)
Q Consensus        68 ~~~C~GtLIs~~~VLTaAhC~~~   90 (286)
                      ..+++|.-|-.+|+|..+|-+..
T Consensus        26 ~~~~~~Lgv~~~~~lvP~H~~~~   48 (212)
T d2h6ma1          26 RWVMNALGVKDDWLLVPSHAYKF   48 (212)
T ss_dssp             EEEEEEEEEEBTEEEEEGGGTTT
T ss_pred             EEEEEEEEEeCCEEEEccccccc
Confidence            36689999999999999998643